Rheology, microstructure and crystallographic preferred orientation of matrix containing a dispersed second phase: Insight from experimentally deformed ice

NASA Astrophysics Data System (ADS)

Cyprych, Daria; Piazolo, Sandra; Wilson, Christopher J. L.; Luzin, Vladimir; Prior, David J.

2016-09-01

We utilize in situ neutron diffraction to continuously track the average grain size and crystal preferred orientation (CPO) development in ice, during uniaxial compression of two-phase and pure ice samples. Two-phase samples are composed of ice matrix and 20 vol.% of second phases of two types: (1) rheologically soft, platy graphite, and (2) rigid, rhomb-shaped calcite. The samples were tested at 10 °C below the ice melting point, ambient pressures, and two strain rates (1 ×10-5 and 2.5 ×10-6 s-1), to 10 and 20% strain. The final CPO in the ice matrix, where second phases are present, is significantly weaker, and ice grain size is smaller than in an ice-only sample. The microstructural and rheological data point to dislocation creep as the dominant deformation regime. The evolution and final strength of the CPO in ice depend on the efficiency of the recrystallization processes, namely grain boundary migration and nucleation. These processes are markedly influenced by the strength, shape, and grain size of the second phase. In addition, CPO development in ice is further accentuated by strain partitioning into the soft second phase, and the transfer of stress onto the rigid second phase.

Laboratory, Computational and Theoretical Investigations of Ice Nucleation and its Implications for Mixed Phase Clouds

NASA Astrophysics Data System (ADS)

Yang, Fan

Ice particles in atmospheric clouds play an important role in determining cloud lifetime, precipitation and radiation. It is therefore important to understand the whole life cycle of ice particles in the atmosphere, e.g., where they come from (nucleation), how they evolve (growth), and where they go (precipitation). Ice nucleation is the crucial step for ice formation, and in this study, we will mainly focus on ice nucleation in the lab and its effect on mixed-phase stratiform clouds. In the first half of this study, we investigate the relevance of moving contact lines (i.e., the region where three or more phases meet) on the phenomenon of contact nucleation. High speed video is used to investigate heterogeneous ice nucleation in supercooled droplets resting on cold substrates under two different dynamic conditions: droplet electrowetting and droplet vibration. The results show that contact-line motion is not a sufficient condition to trigger ice nucleation, while locally curved contact lines that can result from contact-line motion are strongly related to ice nucleation. We propose that pressure perturbations due to locally curved contact lines can strongly enhance the ice nucleation rate, which gives another interpretation for the mechanism for contact nucleation. Corresponding theoretical results provide a quantitative connection between pressure perturbations and temperature, providing a useful tool for ice nucleation calculations in atmospheric models. In this second half of the study, we build a minimalist model for long lifetime mixed-phase stratiform clouds based on stochastic ice nucleation. Our result shows that there is a non-linear relationship between ice water contact and ice number concentration in the mixed-phase cloud, as long as the volume ice nucleation rate is constant. This statistical property may help identify the source of ice nuclei in mixed-phase clouds. In addition, results from Lagrangian ice particle tracking in time dependent fields show that long lifetime ice particles exist in mixed-phase stratiform clouds. We find that small ice particle can be trapped in eddy-like structures. Whether ice particles grow or sublimate depends on the thermodynamic field in the trapping region. This dynamic-thermodynamic coupling effect on the lifetime of ice particles might explain the fast phase-partition change observed in the mixed phase cloud.

Proprioception and Throwing Accuracy in the Dominant Shoulder After Cryotherapy

PubMed Central

Wassinger, Craig A; Myers, Joseph B; Gatti, Joseph M; Conley, Kevin M; Lephart, Scott M

2007-01-01

Context: Application of cryotherapy modalities is common after acute shoulder injury and as part of rehabilitation. During athletic events, athletes may return to play after this treatment. The effects of cryotherapy on dominant shoulder proprioception have been assessed, yet the effects on throwing performance are unknown. Objective: To determine the effects of a cryotherapy application on shoulder proprioception and throwing accuracy. Design: Single-group, pretest-posttest control session design. Setting: University-based biomechanics laboratory. Patients or Other Participants: Healthy college-aged subjects (n = 22). Intervention(s): Twenty-minute ice pack application to the dominant shoulder. Main Outcome Measure(s): Active joint position replication, path of joint motion replication, and the Functional Throwing Performance Index. Results: Subjects demonstrated significant increases in deviation for path of joint motion replication when moving from 90° of abduction with 90° of external rotation to 20° of flexion with neutral shoulder rotation after ice pack application. Also, subjects exhibited a decrease in Functional Throwing Performance Index after cryotherapy application. No differences were found in subjects for active joint position replication after cryotherapy application. Conclusions: Proprioception and throwing accuracy were decreased after ice pack application to the shoulder. It is important that clinicians understand the deficits that occur after cryotherapy, as this modality is commonly used following acute injury and during rehabilitation. This information should also be considered when attempting to return an athlete to play after treatment. PMID:17597948

Magnetic Coulomb phase in the spin ice Ho2Ti2O7.

PubMed

Fennell, T; Deen, P P; Wildes, A R; Schmalzl, K; Prabhakaran, D; Boothroyd, A T; Aldus, R J; McMorrow, D F; Bramwell, S T

2009-10-16

Spin-ice materials are magnetic substances in which the spin directions map onto hydrogen positions in water ice. Their low-temperature magnetic state has been predicted to be a phase that obeys a Gauss' law and supports magnetic monopole excitations: in short, a Coulomb phase. We used polarized neutron scattering to show that the spin-ice material Ho2Ti2O7 exhibits an almost perfect Coulomb phase. Our result proves the existence of such phases in magnetic materials and strongly supports the magnetic monopole theory of spin ice.

Mobile, stationary and mixed phase tracers: consequences to sea ice biogeochemistry

NASA Astrophysics Data System (ADS)

Jeffery, N.; Elliott, S.; Hunke, E. C.; Deal, C.; Jin, M.

2016-02-01

Models of brine motion in sea ice have offered mechanisms for transporting biogeochemical compounds vertically within the ice and between the ice-ocean interface. In these models, sea ice microstructure and/or gross physical properties determine the resupply of nitrate, for example, to sympagic algae and that resupply, in large part, constrains sea ice primary production. The assumption of brine transport models is that the transported matter exists in a purely mobile phase within the ice brine channels. As a result, non-reacting, mobile phase tracers evolve like salinity in dynamic sea ice. Field and laboratory observations indicate that this is a good approximation for the primary algal macronutrients - nitrate, silicate and phosphate, but clear deviations are evident for ammonium, micronutrients such as iron, humic substances, algal bi-products such as gels and extracellular polysaccharides, and the algae themselves. This wide range of biogeochemical matter resists brine motion and is present in both the mobile and stationary phases, i.e. these tracers are "mixed" with respect to their transport phases. Although the precise mechanism for this resistance may be due to attachment by frustules, "stickiness" of the material surface, adsorption, or, in the case of microorganisms, active motility, a key common element in all cases is the presence of the ice matrix. In this presentation we investigate the consequences of mixed phase tracers in sea ice on algal concentrations, vertical distributions, and the potential accumulation of biogeochemical matter within the ice. We assume that sea ice growth promotes retention to the stationary phase, while melt and the disintegration of the ice matrix promotes release into the mobile phase. By varying the retention and release timescales of this formulation, we retrieve the purely mobile and maximal accumulation limits.

Mixed Phase Modeling in GlennICE with Application to Engine Icing

NASA Technical Reports Server (NTRS)

Wright, William B.; Jorgenson, Philip C. E.; Veres, Joseph P.

2011-01-01

A capability for modeling ice crystals and mixed phase icing has been added to GlennICE. Modifications have been made to the particle trajectory algorithm and energy balance to model this behavior. This capability has been added as part of a larger effort to model ice crystal ingestion in aircraft engines. Comparisons have been made to four mixed phase ice accretions performed in the Cox icing tunnel in order to calibrate an ice erosion model. A sample ice ingestion case was performed using the Energy Efficient Engine (E3) model in order to illustrate current capabilities. Engine performance characteristics were supplied using the Numerical Propulsion System Simulation (NPSS) model for this test case.

Experiments indicating a second hydrogen ordered phase of ice VI

PubMed Central

Gasser, Tobias M.; Thoeny, Alexander V.; Plaga, Lucie J.; Köster, Karsten W.; Etter, Martin; Böhmer, Roland

2018-01-01

In the last twelve years five new ice phases were experimentally prepared. Two of them are empty clathrate hydrates and three of them represent hydrogen ordered counterparts of previously known disordered ice phases. Here, we report on hydrogen ordering in ice VI samples produced by cooling at pressures up to 2.00 GPa. Based on results from calorimetry, dielectric relaxation spectroscopy, Raman spectroscopy, and powder X-ray diffraction the existence of a second hydrogen ordered polymorph related to ice VI is suggested. Powder X-ray data show the oxygen network to be the one of ice VI. For the 1.80 GPa sample the activation energy from dielectric spectroscopy is 45 kJ mol–1, which is much larger than for the known hydrogen ordered proxy of ice VI, ice XV. Raman spectroscopy indicates the 1.80 GPa sample to be more ordered than ice XV. It is further distinct from ice XV in that it experiences hydrogen disordering above ≈103 K which is 26 K below the ice XV to ice VI disordering transition. Consequently, below 103 K it is thermodynamically more stable than ice XV, adding a stability region to the phase diagram of water. For the time being we suggest to call this new phase ice β-XV and to relabel it ice XVIII once its crystal structure is known. PMID:29780552

Experiments indicating a second hydrogen ordered phase of ice VI.

PubMed

Gasser, Tobias M; Thoeny, Alexander V; Plaga, Lucie J; Köster, Karsten W; Etter, Martin; Böhmer, Roland; Loerting, Thomas

2018-05-14

In the last twelve years five new ice phases were experimentally prepared. Two of them are empty clathrate hydrates and three of them represent hydrogen ordered counterparts of previously known disordered ice phases. Here, we report on hydrogen ordering in ice VI samples produced by cooling at pressures up to 2.00 GPa. Based on results from calorimetry, dielectric relaxation spectroscopy, Raman spectroscopy, and powder X-ray diffraction the existence of a second hydrogen ordered polymorph related to ice VI is suggested. Powder X-ray data show the oxygen network to be the one of ice VI. For the 1.80 GPa sample the activation energy from dielectric spectroscopy is 45 kJ mol -1 , which is much larger than for the known hydrogen ordered proxy of ice VI, ice XV. Raman spectroscopy indicates the 1.80 GPa sample to be more ordered than ice XV. It is further distinct from ice XV in that it experiences hydrogen disordering above ≈103 K which is 26 K below the ice XV to ice VI disordering transition. Consequently, below 103 K it is thermodynamically more stable than ice XV, adding a stability region to the phase diagram of water. For the time being we suggest to call this new phase ice β-XV and to relabel it ice XVIII once its crystal structure is known.

75 FR 49865 - Extension of Comment Period; Airplane and Engine Certification Requirements in Supercooled Large...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-16

... Ice Crystal Icing Conditions AGENCY: Federal Aviation Administration (FAA), DOT. ACTION: Notice of... airplanes most affected by these icing conditions, mixed phase and ice crystal conditions for all transport category airplanes, and supercooled large drop, mixed phase, and ice crystal icing conditions for all...

A calorimetric study on the low temperature dynamics of doped ice V and its reversible phase transition to hydrogen ordered ice XIII.

PubMed

Salzmann, Christoph G; Radaelli, Paolo G; Finney, John L; Mayer, Erwin

2008-11-07

Doped ice V samples made from solutions containing 0.01 M HCl (DCl), HF (DF), or KOH (KOD) in H(2)O (D(2)O) were slow-cooled from 250 to 77 K at 0.5 GPa. The effect of the dopant on the hydrogen disorder --> order transition and formation of hydrogen ordered ice XIII was studied by differential scanning calorimetry (DSC) with samples recovered at 77 K. DSC scans of acid-doped samples are consistent with a reversible ice XIII <--> ice V phase transition at ambient pressure, showing an endothermic peak on heating due to the hydrogen ordered ice XIII --> disordered ice V phase transition, and an exothermic peak on subsequent cooling due to the ice V --> ice XIII phase transition. The equilibrium temperature (T(o)) for the ice V <--> ice XIII phase transition is 112 K for both HCl doped H(2)O and DCl doped D(2)O. From the maximal enthalpy change of 250 J mol(-1) on the ice XIII --> ice V phase transition and T(o) of 112 K, the change in configurational entropy for the ice XIII --> ice V transition is calculated as 2.23 J mol(-1) K(-1) which is 66% of the Pauling entropy. For HCl, the most effective dopant, the influence of HCl concentration on the formation of ice XIII was determined: on decreasing the concentration of HCl from 0.01 to 0.001 M, its effectiveness is only slightly lowered. However, further HCl decrease to 0.0001 M drastically lowered its effectiveness. HF (DF) doping is less effective in inducing formation of ice XIII than HCl (DCl) doping. On heating at a rate of 5 K min(-1), kinetic unfreezing starts in pure ice V at approximately 132 K, whereas in acid doped ice XIII it starts at about 105 K due to acceleration of reorientation of water molecules. KOH doping does not lead to formation of hydrogen ordered ice XIII, a result which is consistent with our powder neutron diffraction study (C. G. Salzmann, P. G. Radaelli, A. Hallbrucker, E. Mayer, J. L. Finney, Science, 2006, 311, 1758). We further conjecture whether or not ice XIII has a stable region in the water/ice phase diagram, and on a metastable triple point where ice XIII, ice V and ice II are in equilibrium.

Cosmogenic nuclide age estimate for Laurentide Ice Sheet recession from the terminal moraine, New Jersey, USA, and constraints on latest Pleistocene ice sheet history

USGS Publications Warehouse

Corbett, Lee B.; Bierman, Paul R.; Stone, Byron D.; Caffee, Marc W.; Larsen, Patrick L.

2017-01-01

The time at which the Laurentide Ice Sheet reached its maximum extent and subsequently retreated from its terminal moraine in New Jersey has been constrained by bracketing radiocarbon ages on preglacial and postglacial sediments. Here, we present measurements of in situ produced 10Be and 26Al in 16 quartz-bearing samples collected from bedrock outcrops and glacial erratics just north of the terminal moraine in north-central New Jersey; as such, our ages represent a minimum limit on the timing of ice recession from the moraine. The data set includes field and laboratory replicates, as well as replication of the entire data set five years after initial measurement. We find that recession of the Laurentide Ice Sheet from the terminal moraine in New Jersey began before 25.2±2.1 ka (10Be, n=16, average, 1 standard deviation). This cosmogenic nuclide exposure age is consistent with existing limiting radiocarbon ages in the study area and cosmogenic nuclide exposure ages from the terminal moraine on Martha’s Vineyard ~300 km to the northeast. The age we propose for Laurentide Ice Sheet retreat from the New Jersey terminal position is broadly consistent with regional and global climate records of the last glacial maximum termination and records of fluvial incision.

The phase diagram of high-pressure superionic ice

DOE PAGES

Sun, Jiming; Clark, Bryan K.; Torquato, Salvatore; ...

2015-08-28

Superionic ice is a special group of ice phases at high temperature and pressure, which may exist in ice-rich planets and exoplanets. In superionic ice liquid hydrogen coexists with a crystalline oxygen sublattice. At high pressures, the properties of superionic ice are largely unknown. Here we report evidence that from 280 GPa to 1.3 TPa, there are several competing phases within the close-packed oxygen sublattice. At even higher pressure, the close-packed structure of the oxygen sublattice becomes unstable to a new unusual superionic phase in which the oxygen sublattice takes the P2 1/c symmetry. We also discover that higher pressuremore » phases have lower transition temperatures. The diffusive hydrogen in the P2 1/c superionic phase shows strong anisotropic behaviour and forms a quasi-two-dimensional liquid. The ionic conductivity changes abruptly in the solid to close-packed superionic phase transition, but continuously in the solid to P2 1/c superionic phase transition.« less

The role of ice nuclei recycling in the maintenance of cloud ice in Arctic mixed-phase stratocumulus

DOE PAGES

Solomon, Amy; Feingold, G.; Shupe, M. D.

2015-09-25

This study investigates the maintenance of cloud ice production in Arctic mixed-phase stratocumulus in large eddy simulations that include a prognostic ice nuclei (IN) formulation and a diurnal cycle. Balances derived from a mixed-layer model and phase analyses are used to provide insight into buffering mechanisms that maintain ice in these cloud systems. We find that, for the case under investigation, IN recycling through subcloud sublimation considerably prolongs ice production over a multi-day integration. This effective source of IN to the cloud dominates over mixing sources from above or below the cloud-driven mixed layer. Competing feedbacks between dynamical mixing andmore » recycling are found to slow the rate of ice lost from the mixed layer when a diurnal cycle is simulated. Furthermore, the results of this study have important implications for maintaining phase partitioning of cloud ice and liquid that determine the radiative forcing of Arctic mixed-phase clouds.« less

The role of ice nuclei recycling in the maintenance of cloud ice in Arctic mixed-phase stratocumulus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Solomon, Amy; Feingold, G.; Shupe, M. D.

This study investigates the maintenance of cloud ice production in Arctic mixed-phase stratocumulus in large eddy simulations that include a prognostic ice nuclei (IN) formulation and a diurnal cycle. Balances derived from a mixed-layer model and phase analyses are used to provide insight into buffering mechanisms that maintain ice in these cloud systems. We find that, for the case under investigation, IN recycling through subcloud sublimation considerably prolongs ice production over a multi-day integration. This effective source of IN to the cloud dominates over mixing sources from above or below the cloud-driven mixed layer. Competing feedbacks between dynamical mixing andmore » recycling are found to slow the rate of ice lost from the mixed layer when a diurnal cycle is simulated. Furthermore, the results of this study have important implications for maintaining phase partitioning of cloud ice and liquid that determine the radiative forcing of Arctic mixed-phase clouds.« less

Preliminary Results From a Heavily Instrumented Engine Ice Crystal Icing Test in a Ground Based Altitude Test Facility

NASA Technical Reports Server (NTRS)

Flegel, Ashlie B.; Oliver, Michael J.

2016-01-01

Preliminary results from the Heavily Instrumented ALF503R-5 Engine test conducted in the NASA Glenn Research Center Propulsion Systems Laboratory will be discussed. The effects of ice crystal icing on a full scale engine is examined and documented. This model engine, serial number LF01, was used during the inaugural icing test in the PSL facility. The reduction of thrust (rollback) events experienced by this engine in flight were replicated in the facility. Limited instrumentation was used to detect icing. Metal temperature on the exit guide vanes and outer shroud and the load measurement were the only indicators of ice formation. The current study features a similar engine, serial number LF11, which is instrumented to characterize the cloud entering the engine, detect characterize ice accretion, and visualize the ice accretion in the region of interest.

Determination of initiation of DNA replication before and after nuclear formation in Xenopus egg cell free extracts

PubMed Central

1993-01-01

Xenopus egg extracts prepared before and after egg activation retain M- and S-phase specific activity, respectively. Staurosporine, a potent inhibitor of protein kinase, converted M-phase extracts into interphase- like extracts that were capable of forming nuclei upon the addition of sperm DNA. The nuclei formed in the staurosporine treated M-phase extract were incapable of replicating DNA, and they were unable to initiate replication upon the addition of S-phase extracts. Furthermore, replication was inhibited when the staurosporine-treated M- phase extract was added in excess to the staurosporine-treated S-phase extract before the addition of DNA. The membrane-depleted S-phase extract supported neither nuclear formation nor replication; however, preincubation of sperm DNA with these extracts allowed them to form replication-competent nuclei upon the addition of excess staurosporine- treated M-phase extract. These results demonstrate that positive factors in the S-phase extracts determined the initiation of DNA replication before nuclear formation, although these factors were unable to initiate replication after nuclear formation. PMID:8253833

A Source Term for Wave Attenuation by Sea Ice in WAVEWATCH III(registered trademark): IC4

DTIC Science & Technology

2017-06-07

energy in the high frequency face of the spectrum, which highlights the fact that frequency dependent attenuation in necessary to replicate the low-pass... frequency space ; M6) and an expanded version of M5 with up to 10 steps. The remainder of this report is structured as follows: a note about the...function period, T = 1/f. Measurements have shown that ice preferentially damps high frequency waves and in this way ice acts as a low pass filter

Lake Michigan Storm: Wave and Water Level Modeling

DTIC Science & Technology

2012-11-01

does appear the ice implementation does well to replicate either iced (flagged for ice coverage), or for a low wave energy environment. Granted there...Jensen, D.T. Resio, R.A. Luettich, C. Dawson, V.J. Cardone , A.T. Cox, M.D. Powell, H.J. Westerink, and H.J. Roberts. (2010). “A high resolution coupled...coast,” In Preparation, US Army Engineer Research and Development Center, Vicksburg, MS. ERDC/CHL TR-12-26 310 Jensen, R.E., V.J. Cardone , and A.T

Clinical Commentary: On-Ice Return-to-Hockey Progression After Anterior Cruciate Ligament Reconstruction

PubMed Central

Capin, Jacob J.; Behrns, William; Thatcher, Karen; Arundale, Amelia; Smith, Angela Hutchinson; Snyder-Mackler, Lynn

2017-01-01

SYNOPSIS Limited literature exists pertaining to rehabilitation of ice hockey players seeking to return-to-sport after anterior cruciate ligament reconstruction (ACLR). The purpose of this clinical commentary is to present a criterion-based, return-to-ice hockey progression for athletes after ACLR. First, we review pertinent literature and provide previously published guidelines on general rehabilitation after ACLR. Then, we present a four-phase, on-ice skating progression with objective criteria to initiate each phase. During the early on-ice phase, the athlete is reintroduced to specific demands, including graded exposure to forward, backward, and crossover skating. In the intermediate on-ice phase, the emphasis shifts to developing power and introducing anticipated changes of direction within a controlled environment. During the late on-ice phase, the focus progresses to developing anaerobic endurance and introducing unanticipated changes of direction, but still without other players or contact. Finally, once objective return-to-sport criteria are met, non-contact team drills, outnumbered and even-numbered drills, practices, scrimmages, and games are progressively reintroduced during the return-to-sport phase. Recommendations for off-ice strength and conditioning exercises complement the on-ice progression. Additionally, we apply the return-to-hockey progression framework to a case report of a female collegiate defensive ice hockey player who returned to sport successfully after ACLR. This criterion-based return-to-hockey progression may guide rehabilitation specialists managing athletes returning to ice hockey after ACLR. PMID:28355976

Abnormal gas-liquid-solid phase transition behaviour of water observed with in situ environmental SEM.

PubMed

Chen, Xin; Shu, Jiapei; Chen, Qing

2017-04-24

Gas-liquid-solid phase transition behaviour of water is studied with environmental scanning electron microscopy for the first time. Abnormal phenomena are observed. At a fixed pressure of 450 Pa, with the temperature set to -7 °C, direct desublimation happens, and ice grows continuously along the substrate surface. At 550 Pa, although ice is the stable phase according to the phase diagram, metastable liquid droplets first nucleate and grow to ~100-200 μm sizes. Ice crystals nucleate within the large sized droplets, grow up and fill up the droplets. Later, the ice crystals grow continuously through desublimation. At 600 Pa, the metastable liquid grows quickly, with some ice nuclei floating in it, and the liquid-solid coexistence state exists for a long time. By lowering the vapour pressure and/or increasing the substrate temperature, ice sublimates into vapour phase, and especially, the remaining ice forms a porous structure due to preferential sublimation in the concave regions, which can be explained with surface tension effect. Interestingly, although it should be forbidden for ice to transform into liquid phase when the temperature is well below 0 °C, liquid like droplets form during the ice sublimation process, which is attributed to the surface tension effect and the quasiliquid layers.

The ice VII-ice X phase transition with implications for planetary interiors

NASA Astrophysics Data System (ADS)

Aarestad, B.; Frank, M. R.; Scott, H.; Bricker, M.; Prakapenka, V.

2008-12-01

A significant amount of research on the high pressure polymorphs of H2O have detailed the lattice structure and density of these phases, namely ice VI, ice VII, and ice X. These high pressure ices are noteworthy as they may comprise a considerable part of the interior of large icy planets and satellites. However, there is a dearth of data on how the incorporation of an impurity, charged or non-charged, affects the ice VII-ice X transition. This study examined the ice VII-ice X transition that occurs at approximately 62 GPa with a pure system and two select impure systems. Solutions of pure H2O, 1.6 mole percent NaCl in H2O, and 1.60 mole percent CH3OH in H2O were compressed in a diamond anvil cell (DAC). The experiments were performed at the GSECARS 13-BM-D beam line at the Advanced Photon Source at Argonne National Laboratory. Powder diffraction data of the ice samples were collected using monochromatic X-ray radiation, 0.2755 Å, and a MAR 345 online imaging system at intervals of approximately 2 GPa up to ~71.5, ~74.5, and ~68 GPa, respectively. Analyses of the data provided volume-pressure relations (at 298 K) which were used to detail the ice VII-ice X phase transition. The pressure of the phase transition, based upon an interpretation of the X-ray diffraction data, was found to vary as a function of the impurity type. Thus, the depth of the ice VII-ice X phase transition within an ice-rich planetary body can be influenced by trace-level impurities.

Aerosol-cloud interactions in Arctic mixed-phase stratocumulus

NASA Astrophysics Data System (ADS)

Solomon, A.

2017-12-01

Reliable climate projections require realistic simulations of Arctic cloud feedbacks. Of particular importance is accurately simulating Arctic mixed-phase stratocumuli (AMPS), which are ubiquitous and play an important role in regional climate due to their impact on the surface energy budget and atmospheric boundary layer structure through cloud-driven turbulence, radiative forcing, and precipitation. AMPS are challenging to model due to uncertainties in ice microphysical processes that determine phase partitioning between ice and radiatively important cloud liquid water. Since temperatures in AMPS are too warm for homogenous ice nucleation, ice must form through heterogeneous nucleation. In this presentation we discuss a relatively unexplored source of ice production-recycling of ice nuclei in regions of ice subsaturation. AMPS frequently have ice-subsaturated air near the cloud-driven mixed-layer base where falling ice crystals can sublimate, leaving behind IN. This study provides an idealized framework to understand feedbacks between dynamics and microphysics that maintain phase-partitioning in AMPS. In addition, the results of this study provide insight into the mechanisms and feedbacks that may maintain cloud ice in AMPS even when entrainment of IN at the mixed-layer boundaries is weak.

Heterogeneous ice nucleation on phase-separated organic-sulfate particles: effect of liquid vs. glassy coatings

NASA Astrophysics Data System (ADS)

Schill, G. P.; Tolbert, M. A.

2013-05-01

Atmospheric ice nucleation on aerosol particles relevant to cirrus clouds remains one of the least understood processes in the atmosphere. Upper tropospheric aerosols as well as sub-visible cirrus residues are known to be enhanced in both sulfates and organics. The hygroscopic phase transitions of organic-sulfate particles can have an impact on both the cirrus cloud formation mechanism and resulting cloud microphysical properties. In addition to deliquescence and efflorescence, organic-sulfate particles are known to undergo another phase transition known as liquid-liquid phase separation. The ice nucleation properties of particles that have undergone liquid-liquid phase separation are unknown. Here, Raman microscopy coupled with an environmental cell was used to study the low temperature deliquescence, efflorescence, and liquid-liquid phase separation behavior of 2 : 1 mixtures of organic polyols (1,2,6-hexanetriol and 1 : 1 1,2,6-hexanetriol + 2,2,6,6-tetrakis(hydroxymethyl)cyclohexanol) and ammonium sulfate from 240-265 K. Further, the ice nucleation efficiency of these organic-sulfate systems after liquid-liquid phase separation and efflorescence was investigated from 210-235 K. Raman mapping and volume-geometry analysis indicate that these particles contain solid ammonium sulfate cores fully engulfed in organic shells. For the ice nucleation experiments, we find that if the organic coatings are liquid, water vapor diffuses through the shell and ice nucleates on the ammonium sulfate core. In this case, the coatings minimally affect the ice nucleation efficiency of ammonium sulfate. In contrast, if the coatings become semi-solid or glassy, ice instead nucleates on the organic shell. Consistent with recent findings that glasses can be efficient ice nuclei, the phase-separated particles are nearly as efficient at ice nucleation as pure crystalline ammonium sulfate.

Heterogeneous ice nucleation on phase-separated organic-sulfate particles: effect of liquid vs. glassy coatings

NASA Astrophysics Data System (ADS)

Schill, G. P.; Tolbert, M. A.

2012-12-01

Atmospheric ice nucleation on aerosol particles relevant to cirrus clouds remains one of the least understood processes in the atmosphere. Upper tropospheric aerosols as well as sub-visible cirrus residues are known to be enhanced in both sulfates and organics. The hygroscopic phase transitions of organic-sulfate particles can have an impact on both the cirrus cloud formation mechanism and resulting cloud microphysical properties. In addition to deliquescence and efflorescence, organic-sulfate particles are known to undergo another phase transition known as liquid-liquid phase separation. The ice nucleation properties of particles that have undergone liquid-liquid phase separation are unknown. Here, Raman microscopy coupled with an environmental cell was used to study the low temperature deliquescence, efflorescence, and liquid-liquid phase separation behavior of 2:1 mixtures of organic polyols (1,2,6-hexanetriol, and 1:1 1,2,6-hexanetriol +2,2,6,6-tetrakis(hydroxymethyl)cycohexanol) and ammonium sulfate from 240-265 K. Further, the ice nucleation efficiency of these organic-sulfate systems after liquid-liquid phase separation and efflorescence was investigated from 210-235 K. Raman mapping and volume-geometry analysis indicates that these particles contain solid ammonium sulfate cores fully engulfed in organic shells. For the ice nucleation experiments, we find that if the organic coatings are liquid, water vapor diffuses through the shell and ice nucleates on the ammonium sulfate core. In this case, the coatings minimally affect the ice nucleation efficiency of ammonium sulfate. In contrast, if the coatings become semi-solid or glassy, ice instead nucleates on the organic shell. Consistent with recent findings that glasses can be efficient ice nuclei, the phase separated particles are nearly as efficient at ice nucleation as pure crystalline ammonium sulfate.

Development of 3-D Ice Accretion Measurement Method

NASA Technical Reports Server (NTRS)

Lee, Sam; Broeren, Andy P.; Addy, Harold E., Jr.; Sills, Robert; Pifer, Ellen M.

2012-01-01

A research plan is currently being implemented by NASA to develop and validate the use of a commercial laser scanner to record and archive fully three-dimensional (3-D) ice shapes from an icing wind tunnel. The plan focused specifically upon measuring ice accreted in the NASA Icing Research Tunnel (IRT). The plan was divided into two phases. The first phase was the identification and selection of the laser scanning system and the post-processing software to purchase and develop further. The second phase was the implementation and validation of the selected system through a series of icing and aerodynamic tests. Phase I of the research plan has been completed. It consisted of evaluating several scanning hardware and software systems against an established selection criteria through demonstrations in the IRT. The results of Phase I showed that all of the scanning systems that were evaluated were equally capable of scanning ice shapes. The factors that differentiated the scanners were ease of use and the ability to operate in a wide range of IRT environmental conditions.

Comparisons of Mixed-Phase Icing Cloud Simulations with Experiments Conducted at the NASA Propulsion Systems Laboratory

NASA Technical Reports Server (NTRS)

Bartkus, Tadas P.; Struk, Peter M.; Tsao, Jen-Ching

2017-01-01

This paper builds on previous work that compares numerical simulations of mixed-phase icing clouds with experimental data. The model couples the thermal interaction between ice particles and water droplets of the icing cloud with the flowing air of an icing wind tunnel for simulation of NASA Glenn Research Centers (GRC) Propulsion Systems Laboratory (PSL). Measurements were taken during the Fundamentals of Ice Crystal Icing Physics Tests at the PSL tunnel in March 2016. The tests simulated ice-crystal and mixed-phase icing that relate to ice accretions within turbofan engines. Experimentally measured air temperature, humidity, total water content, liquid and ice water content, as well as cloud particle size, are compared with model predictions. The model showed good trend agreement with experimentally measured values, but often over-predicted aero-thermodynamic changes. This discrepancy is likely attributed to radial variations that this one-dimensional model does not address. One of the key findings of this work is that greater aero-thermodynamic changes occur when humidity conditions are low. In addition a range of mixed-phase clouds can be achieved by varying only the tunnel humidity conditions, but the range of humidities to generate a mixed-phase cloud becomes smaller when clouds are composed of smaller particles. In general, the model predicted melt fraction well, in particular with clouds composed of larger particle sizes.

Kinetically Controlled Two-Step Amorphization and Amorphous-Amorphous Transition in Ice.

PubMed

Lin, Chuanlong; Yong, Xue; Tse, John S; Smith, Jesse S; Sinogeikin, Stanislav V; Kenney-Benson, Curtis; Shen, Guoyin

2017-09-29

We report the results of in situ structural characterization of the amorphization of crystalline ice Ih under compression and the relaxation of high-density amorphous (HDA) ice under decompression at temperatures between 96 and 160 K by synchrotron x-ray diffraction. The results show that ice Ih transforms to an intermediate crystalline phase at 100 K prior to complete amorphization, which is supported by molecular dynamics calculations. The phase transition pathways show clear temperature dependence: direct amorphization without an intermediate phase is observed at 133 K, while at 145 K a direct Ih-to-IX transformation is observed; decompression of HDA shows a transition to low-density amorphous ice at 96 K and ∼1  Pa, to ice Ic at 135 K and to ice IX at 145 K. These observations show that the amorphization of compressed ice Ih and the recrystallization of decompressed HDA are strongly dependent on temperature and controlled by kinetic barriers. Pressure-induced amorphous ice is an intermediate state in the phase transition from the connected H-bond water network in low pressure ices to the independent and interpenetrating H-bond network of high-pressure ices.

Kinetically Controlled Two-Step Amorphization and Amorphous-Amorphous Transition in Ice

NASA Astrophysics Data System (ADS)

Lin, Chuanlong; Yong, Xue; Tse, John S.; Smith, Jesse S.; Sinogeikin, Stanislav V.; Kenney-Benson, Curtis; Shen, Guoyin

2017-09-01

We report the results of in situ structural characterization of the amorphization of crystalline ice Ih under compression and the relaxation of high-density amorphous (HDA) ice under decompression at temperatures between 96 and 160 K by synchrotron x-ray diffraction. The results show that ice Ih transforms to an intermediate crystalline phase at 100 K prior to complete amorphization, which is supported by molecular dynamics calculations. The phase transition pathways show clear temperature dependence: direct amorphization without an intermediate phase is observed at 133 K, while at 145 K a direct Ih-to-IX transformation is observed; decompression of HDA shows a transition to low-density amorphous ice at 96 K and ˜1 Pa , to ice Ic at 135 K and to ice IX at 145 K. These observations show that the amorphization of compressed ice Ih and the recrystallization of decompressed HDA are strongly dependent on temperature and controlled by kinetic barriers. Pressure-induced amorphous ice is an intermediate state in the phase transition from the connected H-bond water network in low pressure ices to the independent and interpenetrating H-bond network of high-pressure ices.

Kinetically Controlled Two-Step Amorphization and Amorphous-Amorphous Transition in Ice

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Chuanlong; Yong, Xue; Tse, John S.

We report the results of in situ structural characterization of the amorphization of crystalline ice Ih under compression and the relaxation of high-density amorphous (HDA) ice under decompression at temperatures between 96 and 160 K by synchrotron x-ray diffraction. The results show that ice Ih transforms to an intermediate crystalline phase at 100 K prior to complete amorphization, which is supported by molecular dynamics calculations. The phase transition pathways show clear temperature dependence: direct amorphization without an intermediate phase is observed at 133 K, while at 145 K a direct Ih-to-IX transformation is observed; decompression of HDA shows a transitionmore » to low-density amorphous ice at 96 K and ~ 1 Pa , to ice Ic at 135 K and to ice IX at 145 K. These observations show that the amorphization of compressed ice Ih and the recrystallization of decompressed HDA are strongly dependent on temperature and controlled by kinetic barriers. Pressure-induced amorphous ice is an intermediate state in the phase transition from the connected H-bond water network in low pressure ices to the independent and interpenetrating H-bond network of high-pressure ices.« less

Reconstructing the flow pattern evolution in inner region of the Fennoscandian Ice Sheet by glacial landforms from Gausdal Vestfjell area, south-central Norway

NASA Astrophysics Data System (ADS)

Putniņš, Artūrs; Henriksen, Mona

2017-05-01

More than 17 000 landforms from detailed LiDAR data sets have been mapped in the Gausdal Vestfjell area, south-central Norway. The spatial distribution and relationships between the identified subglacial bedforms, mainly streamlined landforms and ribbed moraine ridges, have provided new insight on the glacial dynamics and the sequence of glacial events during the last glaciation. This established evolution of the Late Weichselian ice flow pattern at this inner region of the Fennoscandian Ice Sheet is stepwise where a topography independent ice flow (Phase I) are followed by a regional (Phase II) before a strongly channelized, topography driven ice flow (Phase III). The latter phase is divided into several substages where the flow sets are becoming increasingly confined into the valleys, likely separated by colder, less active ice before down-melting of ice took place. A migrating ice divide and lowering of the ice surface seems to be the main reasons for these changes in ice flow pattern. Formation of ribbed moraine can occur both when the ice flow slows down and speeds up, forming respectively broad fields and elongated belts of ribbed moraines.

On-Ice Return-to-Hockey Progression After Anterior Cruciate Ligament Reconstruction.

PubMed

Capin, Jacob J; Behrns, William; Thatcher, Karen; Arundale, Amelia; Smith, Angela Hutchinson; Snyder-Mackler, Lynn

2017-05-01

Synopsis The literature pertaining to the rehabilitation of ice hockey players seeking to return to sport after anterior cruciate ligament reconstruction (ACLR) is currently limited. The purpose of this clinical commentary was to present a criterion-based progression for return to ice hockey for athletes after ACLR. First, we review pertinent literature and provide previously published guidelines on general rehabilitation after ACLR. Then, we present a 4-phase, on-ice skating progression with objective criteria to initiate each phase. During the early on-ice phase, the athlete is reintroduced to specific demands, including graded exposure to forward, backward, and crossover skating. In the intermediate on-ice phase, the emphasis shifts to developing power and introducing anticipated changes of direction within a controlled environment. During the late on-ice phase, the focus progresses to developing anaerobic endurance and introducing unanticipated changes of direction, but still without other players or contact. Finally, once objective return-to-sport criteria are met, noncontact team drills, outnumbered and even-numbered drills, practices, scrimmages, and games are progressively reintroduced during the return-to-sport phase. Recommendations for off-ice strength and conditioning exercises complement the on-ice progression. Additionally, we apply the return-to-hockey progression framework to a case report of a female collegiate defensive ice hockey player who returned to sport successfully after ACLR. This criterion-based return-to-hockey progression may guide rehabilitation specialists managing athletes returning to ice hockey after ACLR. J Orthop Sports Phys Ther 2017;47(5):324-333. Epub 29 Mar 2017. doi:10.2519/jospt.2017.7245.

Micro- and Nano-Liquid Phases Coexistent with Ice as Separation and Reaction Media.

PubMed

Okada, Tetsuo

2017-04-01

Ice has a variety of scientifically interesting features, some of which have not been reasonably interpreted despite substantial efforts by researchers. Most chemical studies of ice have focused on the elucidation of its physicochemical nature and its roles in the natural environment. Ice often contains impurities, such as salts, and in such cases, a liquid phase coexists with solid ice over a wide temperature range. This impure ice also acts as a cryoreactor, governing the circulation of chemical species of environmental importance. Reactions and phenomena occurring in this liquid phase show features different from those seen in normal bulk aqueous solutions. In the present account, we discuss the chemical characteristics of the liquid phase that develops in a frozen aqueous phase and show how novel analytical systems can be designed based on he features of the liquid phase which are predictable in some cases but unpredictable in others. © 2017 The Chemical Society of Japan & Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Quantum simulation of thermally-driven phase transition and oxygen K-edge x-ray absorption of high-pressure ice

PubMed Central

Kang, Dongdong; Dai, Jiayu; Sun, Huayang; Hou, Yong; Yuan, Jianmin

2013-01-01

The structure and phase transition of high-pressure ice are of long-standing interest and challenge, and there is still a huge gap between theoretical and experimental understanding. The quantum nature of protons such as delocalization, quantum tunneling and zero-point motion is crucial to the comprehension of the properties of high-pressure ice. Here we investigated the temperature-induced phase transition and oxygen K-edge x-ray absorption spectra of ice VII, VIII and X using ab initio path-integral molecular dynamics simulations. The tremendous difference between experiments and the previous theoretical predictions is closed for the phase diagram of ice below 300 K at pressures up to 110 GPa. Proton tunneling assists the proton-ordered ice VIII to transform into proton-disordered ice VII where only thermal activated proton-transfer cannot occur. The oxygen K edge with its shift is sensitive to the order-disorder transition, and therefore can be applied to diagnose the dynamics of ice structures. PMID:24253589

Contributions of Heterogeneous Ice Nucleation, Large-Scale Circulation, and Shallow Cumulus Detrainment to Cloud Phase Transition in Mixed-Phase Clouds with NCAR CAM5

NASA Astrophysics Data System (ADS)

Liu, X.; Wang, Y.; Zhang, D.; Wang, Z.

2016-12-01

Mixed-phase clouds consisting of both liquid and ice water occur frequently at high-latitudes and in mid-latitude storm track regions. This type of clouds has been shown to play a critical role in the surface energy balance, surface air temperature, and sea ice melting in the Arctic. Cloud phase partitioning between liquid and ice water determines the cloud optical depth of mixed-phase clouds because of distinct optical properties of liquid and ice hydrometeors. The representation and simulation of cloud phase partitioning in state-of-the-art global climate models (GCMs) are associated with large biases. In this study, the cloud phase partition in mixed-phase clouds simulated from the NCAR Community Atmosphere Model version 5 (CAM5) is evaluated against satellite observations. Observation-based supercooled liquid fraction (SLF) is calculated from CloudSat, MODIS and CPR radar detected liquid and ice water paths for clouds with cloud-top temperatures between -40 and 0°C. Sensitivity tests with CAM5 are conducted for different heterogeneous ice nucleation parameterizations with respect to aerosol influence (Wang et al., 2014), different phase transition temperatures for detrained cloud water from shallow convection (Kay et al., 2016), and different CAM5 model configurations (free-run versus nudged winds and temperature, Zhang et al., 2015). A classical nucleation theory-based ice nucleation parameterization in mixed-phase clouds increases the SLF especially at temperatures colder than -20°C, and significantly improves the model agreement with observations in the Arctic. The change of transition temperature for detrained cloud water increases the SLF at higher temperatures and improves the SLF mostly over the Southern Ocean. Even with the improved SLF from the ice nucleation and shallow cumulus detrainment, the low SLF biases in some regions can only be improved through the improved circulation with the nudging technique. Our study highlights the challenges of representations of large-scale moisture transport, cloud microphysics, ice nucleation, and cumulus detrainment in order to improve the mixed-phase transition in GCMs.

Convection Models for Ice-Water System: Dynamical Investigation of Phase Transition

NASA Astrophysics Data System (ADS)

Allu Peddinti, D.; McNamara, A. K.

2012-12-01

Ever since planetary missions of Voyager and Galileo revealed a dynamically altered surface of the icy moon Europa, a possible subsurface ocean under an icy shell has been speculated and surface features have been interpreted from an interior dynamics perspective. The physics of convection in a two phase water-ice system is governed by a wide set of physical parameters that include melting viscosity of ice, the variation of viscosity due to pressure and temperature, temperature contrast across and tidal heating within the system, and the evolving thickness of each layer. Due to the extreme viscosity contrast between liquid water and solid ice, it is not feasible to model the entire system to study convection. However, using a low-viscosity proxy (higher viscosity than the liquid water but much lower than solid ice) for the liquid phase provides a convenient approximation of the system, and allows for a relatively realistic representation of convection within the ice layer while also providing a self-consistent ice layer thickness that is a function of the thermal state of the system. In order to apply this method appropriately, we carefully examine the upper bound of viscosity required for the low-viscosity proxy to adequately represent the liquid phase. We identify upper bounds on the viscosity of the proxy liquid such that convective dynamics of the ice are not affected by further reductions of viscosity. Furthermore, we investigate how the temperature contrast across the system and viscosity contrast between liquid and ice control ice layer thickness. We also investigate ice shell thickening as a function of cooling, particularly how viscosity affects the conduction-to-convection transition within the ice shell. Finally, we present initial results that investigate the effects that latent heat of fusion (due to the ice-water phase transition) has on ice convection.

Far-infrared spectral studies of phase changes in water ice induced by proton irradiation

NASA Technical Reports Server (NTRS)

Moore, Marla H.; Hudson, Reggie L.

1992-01-01

Changes in the FIR spectrum of crystalline and amorphous water ice as a function of temperature are reported. The dramatic differences between the spectra of these ices in the FIR are used to examine the effect of proton irradiation on the stability of the crystalline and amorphous ice phases from 13 to 77 K. In particular, the spectra near 13 K show interconversion between the amorphous and crystalline ice phases beginning at doses near 2 eV/molecule and continuing cyclically with increased dose. The results are used to estimate the stability of irradiated ices in astronomical environments.

Cyclin-dependent kinase regulates the length of S phase through TICRR/TRESLIN phosphorylation.

PubMed

Sansam, Courtney G; Goins, Duane; Siefert, Joseph C; Clowdus, Emily A; Sansam, Christopher L

2015-03-01

S-phase cyclin-dependent kinases (CDKs) stimulate replication initiation and accelerate progression through the replication timing program, but it is unknown which CDK substrates are responsible for these effects. CDK phosphorylation of the replication factor TICRR (TopBP1-interacting checkpoint and replication regulator)/TRESLIN is required for DNA replication. We show here that phosphorylated TICRR is limiting for S-phase progression. Overexpression of a TICRR mutant with phosphomimetic mutations at two key CDK-phosphorylated residues (TICRR(TESE)) stimulates DNA synthesis and shortens S phase by increasing replication initiation. This effect requires the TICRR region that is necessary for its interaction with MDM two-binding protein. Expression of TICRR(TESE) does not grossly alter the spatial organization of replication forks in the nucleus but does increase replication clusters and the number of replication forks within each cluster. In contrast to CDK hyperactivation, the acceleration of S-phase progression by TICRR(TESE) does not induce DNA damage. These results show that CDK can stimulate initiation and compress the replication timing program by phosphorylating a single protein, suggesting a simple mechanism by which S-phase length is controlled. © 2015 Sansam et al.; Published by Cold Spring Harbor Laboratory Press.

Evidence of a conserved role for Chlamydia HtrA in the replication phase of the chlamydial developmental cycle.

PubMed

Patel, Pooja; De Boer, Leonore; Timms, Peter; Huston, Wilhelmina May

2014-08-01

Identification of the HtrA inhibitor JO146 previously enabled us to demonstrate an essential function for HtrA during the mid-replicative phase of the Chlamydia trachomatis developmental cycle. Here we extend our investigations to other members of the Chlamydia genus. C. trachomatis isolates with distinct replicative phase growth kinetics showed significant loss of viable infectious progeny after HtrA was inhibited during the replicative phase. Mid-replicative phase addition of JO146 was also significantly detrimental to Chlamydia pecorum, Chlamydia suis and Chlamydia cavie. These data combined indicate that HtrA has a conserved critical role during the replicative phase of the chlamydial developmental cycle. Copyright © 2014 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Stochastic Endogenous Replication Stress Causes ATR-Triggered Fluctuations in CDK2 Activity that Dynamically Adjust Global DNA Synthesis Rates.

PubMed

Daigh, Leighton H; Liu, Chad; Chung, Mingyu; Cimprich, Karlene A; Meyer, Tobias

2018-06-04

Faithful DNA replication is challenged by stalling of replication forks during S phase. Replication stress is further increased in cancer cells or in response to genotoxic insults. Using live single-cell image analysis, we found that CDK2 activity fluctuates throughout an unperturbed S phase. We show that CDK2 fluctuations result from transient ATR signals triggered by stochastic replication stress events. In turn, fluctuating endogenous CDK2 activity causes corresponding decreases and increases in DNA synthesis rates, linking changes in stochastic replication stress to fluctuating global DNA replication rates throughout S phase. Moreover, cells that re-enter the cell cycle after mitogen stimulation have increased CDK2 fluctuations and prolonged S phase resulting from increased replication stress-induced CDK2 suppression. Thus, our study reveals a dynamic control principle for DNA replication whereby CDK2 activity is suppressed and fluctuates throughout S phase to continually adjust global DNA synthesis rates in response to recurring stochastic replication stress events. Copyright © 2018. Published by Elsevier Inc.

Proton dynamics and the phase diagram of dense water ice.

PubMed

Hernandez, J-A; Caracas, R

2018-06-07

All the different phases of water ice between 2 GPa and several megabars are based on a single body-centered cubic sub-lattice of oxygen atoms. They differ only by the behavior of the hydrogen atoms. In this study, we investigate the dynamics of the H atoms at high pressures and temperatures in water ice from first-principles molecular dynamics simulations. We provide a detailed analysis of the O-H⋯O bonding dynamics over the entire stability domain of the body-centered cubic (bcc) water ices and compute transport properties and vibrational density-of-states. We report the first ab initio evidence for a plastic phase of water and we propose a coherent phase diagram for bcc water ices compatible with the two groups of melting curves and with the multiple anomalies reported in ice VII around 15 GPa.

The sensitivities of in cloud and cloud top phase distributions to primary ice formation in ICON-LEM

NASA Astrophysics Data System (ADS)

Beydoun, H.; Karrer, M.; Tonttila, J.; Hoose, C.

2017-12-01

Mixed phase clouds remain a leading source of uncertainty in our attempt to quantify cloud-climate and aerosol-cloud climate interactions. Nevertheless, recent advances in parametrizing the primary ice formation process, high resolution cloud modelling, and retrievals of cloud phase distributions from satellite data offer an excellent opportunity to conduct closure studies on the sensitivity of the cloud phase to microphysical and dynamical processes. Particularly, the reliability of satellite data to resolve the phase at the top of the cloud provides a promising benchmark to compare model output to. We run large eddy simulations with the new ICOsahedral Non-hydrostatic atmosphere model (ICON) to place bounds on the sensitivity of in cloud and cloud top phase to the primary ice formation process. State of the art primary ice formation parametrizations in the form of the cumulative ice active site density ns are implemented in idealized deep convective cloud simulations. We exploit the ability of ICON-LEM to switch between a two moment microphysics scheme and the newly developed Predicted Particle Properties (P3) scheme by running our simulations in both configurations for comparison. To quantify the sensitivity of cloud phase to primary ice formation, cloud ice content is evaluated against order of magnitude changes in ns at variable convective strengths. Furthermore, we assess differences between in cloud and cloud top phase distributions as well as the potential impact of updraft velocity on the suppression of the Wegener-Bergeron-Findeisen process. The study aims to evaluate our practical understanding of primary ice formation in the context of predicting the structure and evolution of mixed phase clouds.

SMC1-Mediated Intra-S-Phase Arrest Facilitates Bocavirus DNA Replication

PubMed Central

Luo, Yong; Deng, Xuefeng; Cheng, Fang; Li, Yi

2013-01-01

Activation of a host DNA damage response (DDR) is essential for DNA replication of minute virus of canines (MVC), a member of the genus Bocavirus of the Parvoviridae family; however, the mechanism by which DDR contributes to viral DNA replication is unknown. In the current study, we demonstrate that MVC infection triggers the intra-S-phase arrest to slow down host cellular DNA replication and to recruit cellular DNA replication factors for viral DNA replication. The intra-S-phase arrest is regulated by ATM (ataxia telangiectasia-mutated kinase) signaling in a p53-independent manner. Moreover, we demonstrate that SMC1 (structural maintenance of chromosomes 1) is the key regulator of the intra-S-phase arrest induced during infection. Either knockdown of SMC1 or complementation with a dominant negative SMC1 mutant blocks both the intra-S-phase arrest and viral DNA replication. Finally, we show that the intra-S-phase arrest induced during MVC infection was caused neither by damaged host cellular DNA nor by viral proteins but by replicating viral genomes physically associated with the DNA damage sensor, the Mre11-Rad50-Nbs1 (MRN) complex. In conclusion, the feedback loop between MVC DNA replication and the intra-S-phase arrest is mediated by ATM-SMC1 signaling and plays a critical role in MVC DNA replication. Thus, our findings unravel the mechanism underlying DDR signaling-facilitated MVC DNA replication and demonstrate a novel strategy of DNA virus-host interaction. PMID:23365434

Mapping uncharted territory in ice from zeolite networks to ice structures.

PubMed

Engel, Edgar A; Anelli, Andrea; Ceriotti, Michele; Pickard, Chris J; Needs, Richard J

2018-06-05

Ice is one of the most extensively studied condensed matter systems. Yet, both experimentally and theoretically several new phases have been discovered over the last years. Here we report a large-scale density-functional-theory study of the configuration space of water ice. We geometry optimise 74,963 ice structures, which are selected and constructed from over five million tetrahedral networks listed in the databases of Treacy, Deem, and the International Zeolite Association. All prior knowledge of ice is set aside and we introduce "generalised convex hulls" to identify configurations stabilised by appropriate thermodynamic constraints. We thereby rediscover all known phases (I-XVII, i, 0 and the quartz phase) except the metastable ice IV. Crucially, we also find promising candidates for ices XVIII through LI. Using the "sketch-map" dimensionality-reduction algorithm we construct an a priori, navigable map of configuration space, which reproduces similarity relations between structures and highlights the novel candidates. By relating the known phases to the tractably small, yet structurally diverse set of synthesisable candidate structures, we provide an excellent starting point for identifying formation pathways.

Smagglce: Surface Modeling and Grid Generation for Iced Airfoils: Phase 1 Results

NASA Technical Reports Server (NTRS)

Vickerman, Mary B.; Choo, Yung K.; Braun, Donald C.; Baez, Marivell; Gnepp, Steven

1999-01-01

SmaggIce (Surface Modeling and Grid Generation for Iced Airfoils) is a software toolkit used in the process of aerodynamic performance prediction of iced airfoils with grid-based Computational Fluid Dynamics (CFD). It includes tools for data probing, boundary smoothing, domain decomposition, and structured grid generation and refinement. SmaggIce provides the underlying computations to perform these functions, a GUI (Graphical User Interface) to control and interact with those functions, and graphical displays of results, it is being developed at NASA Glenn Research Center. This paper discusses the overall design of SmaggIce as well as what has been implemented in Phase 1. Phase 1 results provide two types of software tools: interactive ice shape probing and interactive ice shape control. The ice shape probing tools will provide aircraft icing engineers and scientists with an interactive means to measure the physical characteristics of ice shapes. On the other hand, the ice shape control features of SmaggIce will allow engineers to examine input geometry data, correct or modify any deficiencies in the geometry, and perform controlled systematic smoothing to a level that will make the CFD process manageable.

Control of ice chromatographic retention mechanism by changing temperature and dopant concentration.

PubMed

Tasaki, Yuiko; Okada, Tetsuo

2011-12-15

A liquid phase coexists with solid water ice in a typical binary system, such as NaCl-water, in the temperature range between the freezing point and the eutectic point (t(eu)) of the system. In ice chromatography with salt-doped ice as the stationary phase, both solid and liquid phase can contribute to solute retention in different fashions; that is, the solid ice surface acts as an adsorbent, while a solute can be partitioned into the liquid phase. Thus, both adsorption and partition mechanisms can be utilized for ice chromatographic separation. An important feature in this approach is that the liquid phase volume can be varied by changing the temperature and the concentration of a salt incorporated into the ice stationary phase. Thus, we can control the relative contribution from the partition mechanism in the entire retention because the liquid phase volume can be estimated from the freezing depression curve. Separation selectivity can thereby be modified. The applicability of this concept has been confirmed for the solutes of different adsorption and partition abilities. The predicted retention based on thermodynamics basically agrees well with the corresponding experimental retention. However, one important inconsistency has been found. The calculation predicts a step-like discontinuity of the solute retention at t(eu) because the phase diagram suggests that the liquid phase abruptly appears at t(eu) when the temperature increases. In contrast, the corresponding experimental plots are continuous over the wider range including the subeutectic temperatures. This discrepancy is explained by the existence of the liquid phase below t(eu). A difference between predicted and measured retention factors allows the estimation of the volume of the subeutectic liquid phase.

The Influence of Thermodynamic Phase on the Retrieval of Mixed-Phase Cloud Microphysical and Optical Properties in the Visible and Near Infrared Region

NASA Technical Reports Server (NTRS)

Lee, Joonsuk; Yang, Ping; Dessler, Andrew E.; Baum, Bryan A.; Platnick, Steven

2005-01-01

Cloud microphysical and optical properties are inferred from the bidirectional reflectances simulated for a single-layered cloud consisting of an external mixture of ice particles and liquid droplets. The reflectances are calculated with a rigorous discrete ordinates radiative transfer model and are functions of the cloud effective particle size, the cloud optical thickness, and the values of the ice fraction in the cloud (i.e., the ratio of ice water content to total water content). In the present light scattering and radiative transfer simulations, the ice fraction is assumed to be vertically homogeneous; the habit (shape) percentage as a function of ice particle size is consistent with that used for the Moderate Resolution Imaging Spectroradiometer (MODIS) operational (Collection 4 and earlier) cloud products; and the surface is assumed to be Lambertian with an albedo of 0.03. Furthermore, error analyses pertaining to the inference of the effective particle sizes and optical thicknesses of mixed-phase clouds are performed. Errors are calculated with respect to the assumption of a cloud containing solely liquid or ice phase particles. The analyses suggest that the effective particle size inferred for a mixed-phase cloud can be underestimated (or overestimated) if pure liquid phase (or pure ice phase) is assumed for the cloud, whereas the corresponding cloud optical thickness can be overestimated (or underestimated).

Can xenon in water inhibit ice growth? Molecular dynamics of phase transitions in water-Xe system.

PubMed

Artyukhov, Vasilii I; Pulver, Alexander Yu; Peregudov, Alex; Artyuhov, Igor

2014-07-21

Motivated by recent experiments showing the promise of noble gases as cryoprotectants, we perform molecular dynamics modeling of phase transitions in water with xenon under cooling. We follow the structure and dynamics of xenon water solution as a function of temperature. Homogeneous nucleation of clathrate hydrate phase is observed and characterized. As the temperature is further reduced we observe hints of dissociation of clathrate due to stronger hydrophobic hydration, pointing towards a possible instability of clathrate at cryogenic temperatures and conversion to an amorphous phase comprised of "xenon + hydration shell" Xe·(H2O)21.5 clusters. Simulations of ice-xenon solution interface in equilibrium and during ice growth reveal the effects of xenon on the ice-liquid interface, where adsorbed xenon causes roughening of ice surface but does not preferentially form clathrate. These results provide evidence against the ice-blocker mechanism of xenon cryoprotection.

Net community production in the bottom of first-year sea ice over the Arctic spring bloom

NASA Astrophysics Data System (ADS)

Campbell, K.; Mundy, C. J.; Gosselin, M.; Landy, J. C.; Delaforge, A.; Rysgaard, S.

2017-09-01

The balance of photosynthesis and respiration by organisms like algae and bacteria determines whether sea ice is net heterotrophic or autotrophic. In turn this clarifies the influence of microbes on atmosphere-ice-ocean gas fluxes and their contribution to the trophic system. In this study we define two phases of the spring bloom based on bottom ice net community production and algal growth. Phase I was characterized by limited algal accumulation and low productivity, which at times resulted in net heterotrophy. Greater productivity in Phase II drove rapid algal accumulation that consistently produced net autotrophic conditions. The different phases were associated with seasonal shifts in light availability and species dominance. Results from this study demonstrate the importance of community respiration on spring productivity, as respiration rates can maintain a heterotrophic state independent of algal growth. This challenges previous assumptions of a fully autotrophic sea ice community during the ice-covered spring.

Improving Mixed-phase Cloud Parameterization in Climate Model with the ACRF Measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Zhien

Mixed-phase cloud microphysical and dynamical processes are still poorly understood, and their representation in GCMs is a major source of uncertainties in overall cloud feedback in GCMs. Thus improving mixed-phase cloud parameterizations in climate models is critical to reducing the climate forecast uncertainties. This study aims at providing improved knowledge of mixed-phase cloud properties from the long-term ACRF observations and improving mixed-phase clouds simulations in the NCAR Community Atmosphere Model version 5 (CAM5). The key accomplishments are: 1) An improved retrieval algorithm was developed to provide liquid droplet concentration for drizzling or mixed-phase stratiform clouds. 2) A new ice concentrationmore » retrieval algorithm for stratiform mixed-phase clouds was developed. 3) A strong seasonal aerosol impact on ice generation in Arctic mixed-phase clouds was identified, which is mainly attributed to the high dust occurrence during the spring season. 4) A suite of multi-senor algorithms was applied to long-term ARM observations at the Barrow site to provide a complete dataset (LWC and effective radius profile for liquid phase, and IWC, Dge profiles and ice concentration for ice phase) to characterize Arctic stratiform mixed-phase clouds. This multi-year stratiform mixed-phase cloud dataset provides necessary information to study related processes, evaluate model stratiform mixed-phase cloud simulations, and improve model stratiform mixed-phase cloud parameterization. 5). A new in situ data analysis method was developed to quantify liquid mass partition in convective mixed-phase clouds. For the first time, we reliably compared liquid mass partitions in stratiform and convective mixed-phase clouds. Due to the different dynamics in stratiform and convective mixed-phase clouds, the temperature dependencies of liquid mass partitions are significantly different due to much higher ice concentrations in convective mixed phase clouds. 6) Systematic evaluations of mixed-phase cloud simulations by CAM5 were performed. Measurement results indicate that ice concentrations control stratiform mixed-phase cloud properties. The improvement of ice concentration parameterization in the CAM5 was done in close collaboration with Dr. Xiaohong Liu, PNNL (now at University of Wyoming).« less

A detailed study of ice nucleation by feldspar minerals

NASA Astrophysics Data System (ADS)

Whale, T. F.; Murray, B. J.; Wilson, T. W.; Carpenter, M. A.; Harrison, A.; Holden, M. A.; Vergara Temprado, J.; Morris, J.; O'Sullivan, D.

2015-12-01

Immersion mode heterogeneous ice nucleation plays a crucial role in controlling the composition of mixed phase clouds, which contain both supercooled liquid water and ice particles. The amount of ice in mixed phase clouds can affect cloud particle size, lifetime and extent and so affects radiative properties and precipitation. Feldspar minerals are probably the most important minerals for ice nucleation in mixed phase clouds because they nucleate ice more efficiently than other components of atmospheric mineral dust (Atkinson et al. 2013). The feldspar class of minerals is complex, containing numerous chemical compositions, several crystal polymorphs and wide variations in microscopic structure. Here we present the results of a study into ice nucleation by a wide range of different feldspars. We found that, in general, alkali feldspars nucleate ice more efficiently than plagioclase feldspars. However, we also found that particular alkali feldspars nucleate ice relatively inefficiently, suggesting that chemical composition is not the only important factor that dictates the ice nucleation efficiency of feldspar minerals. Ice nucleation by feldspar is described well by the singular model and is probably site specific in nature. The alkali feldspars that do not nucleate ice efficiently possess relatively homogenous structure on the micrometre scale suggesting that the important sites for nucleation are related to surface topography. Ice nucleation active site densities for the majority of tested alkali feldspars are similar to those found by Atkinson et al (2013), meaning that the validity of global aerosol modelling conducted in that study is not affected. Additionally, we have found that ice nucleation by feldspars is strongly influenced, both positively and negatively, by the solute content of droplets. Most other nucleants we have tested are unaffected by solutes. This provides insight into the mechanism of ice nucleation by feldspars and could be of importance when modelling ice nucleation in mixed phase clouds. Atkinson, J. D., Murray, B. J., Woodhouse, M. T., Carslaw, K. S., Whale, T. F., Baustian, K. J., Dobbie, S., O'Sullivan, D., and Malkin, T. L.: The importance of feldspar for ice nucleation by mineral dust in mixed-phase clouds, Nature, 10.1038/nature12278, (2013).

A new set-up for simultaneous high-precision measurements of CO2, δ13C-CO2 and δ18O-CO2 on small ice core samples

NASA Astrophysics Data System (ADS)

Jenk, Theo Manuel; Rubino, Mauro; Etheridge, David; Ciobanu, Viorela Gabriela; Blunier, Thomas

2016-08-01

Palaeoatmospheric records of carbon dioxide and its stable carbon isotope composition (δ13C) obtained from polar ice cores provide important constraints on the natural variability of the carbon cycle. However, the measurements are both analytically challenging and time-consuming; thus only data exist from a limited number of sampling sites and time periods. Additional analytical resources with high analytical precision and throughput are thus desirable to extend the existing datasets. Moreover, consistent measurements derived by independent laboratories and a variety of analytical systems help to further increase confidence in the global CO2 palaeo-reconstructions. Here, we describe our new set-up for simultaneous measurements of atmospheric CO2 mixing ratios and atmospheric δ13C and δ18O-CO2 in air extracted from ice core samples. The centrepiece of the system is a newly designed needle cracker for the mechanical release of air entrapped in ice core samples of 8-13 g operated at -45 °C. The small sample size allows for high resolution and replicate sampling schemes. In our method, CO2 is cryogenically and chromatographically separated from the bulk air and its isotopic composition subsequently determined by continuous flow isotope ratio mass spectrometry (IRMS). In combination with thermal conductivity measurement of the bulk air, the CO2 mixing ratio is calculated. The analytical precision determined from standard air sample measurements over ice is ±1.9 ppm for CO2 and ±0.09 ‰ for δ13C. In a laboratory intercomparison study with CSIRO (Aspendale, Australia), good agreement between CO2 and δ13C results is found for Law Dome ice core samples. Replicate analysis of these samples resulted in a pooled standard deviation of 2.0 ppm for CO2 and 0.11 ‰ for δ13C. These numbers are good, though they are rather conservative estimates of the overall analytical precision achieved for single ice sample measurements. Facilitated by the small sample requirement, replicate measurements are feasible, allowing the method precision to be improved potentially. Further, new analytical approaches are introduced for the accurate correction of the procedural blank and for a consistent detection of measurement outliers, which is based on δ18O-CO2 and the exchange of oxygen between CO2 and the surrounding ice (H2O).

Modeling Cloud Phase Fraction Based on In-situ Observations in Stratiform Clouds

NASA Astrophysics Data System (ADS)

Boudala, F. S.; Isaac, G. A.

2005-12-01

Mixed-phase clouds influence weather and climate in several ways. Due to the fact that they exhibit very different optical properties as compared to ice or liquid only clouds, they play an important role in the earth's radiation balance by modifying the optical properties of clouds. Precipitation development in clouds is also enhanced under mixed-phase conditions and these clouds may contain large supercooled drops that freeze quickly in contact with aircraft surfaces that may be a hazard to aviation. The existence of ice and liquid phase clouds together in the same environment is thermodynamically unstable, and thus they are expected to disappear quickly. However, several observations show that mixed-phase clouds are relatively stable in the natural environment and last for several hours. Although there have been some efforts being made in the past to study the microphysical properties of mixed-phase clouds, there are still a number of uncertainties in modeling these clouds particularly in large scale numerical models. In most models, very simple temperature dependent parameterizations of cloud phase fraction are being used to estimate the fraction of ice or liquid phase in a given mixed-phase cloud. In this talk, two different parameterizations of ice fraction using in-situ aircraft measurements of cloud microphysical properties collected in extratropical stratiform clouds during several field programs will be presented. One of the parameterizations has been tested using a single prognostic equation developed by Tremblay et al. (1996) for application in the Canadian regional weather prediction model. The addition of small ice particles significantly increased the vapor deposition rate when the natural atmosphere is assumed to be water saturated, and thus this enhanced the glaciation of simulated mixed-phase cloud via the Bergeron-Findeisen process without significantly affecting the other cloud microphysical processes such as riming and particle sedimentation rates. After the water vapor pressure in mixed-phase cloud was modified based on the Lord et al. (1984) scheme by weighting the saturation water vapor pressure with ice fraction, it was possible to simulate more stable mixed-phase cloud. It was also noted that the ice particle concentration (L>100 μm) in mixed-phase cloud is lower on average by a factor 3 and as a result the parameterization should be corrected for this effect. After accounting for this effect, the parameterized ice fraction agreed well with observed mean ice fraction.

Design of analytical systems based on functionality of doped ice.

PubMed

Okada, Tetsuo

2014-01-01

Ice plays an important role for the circulations of some compounds in the global environment. Both the ice surface and the liquid phase developed in a frozen solution are involved in such reactions of the molecules of environmental importance. This leads to the idea that ice can be used to design novel analytical reaction systems. We devised ice chromatography, in which ice particles are used as the liquid chromatographic stationary phase, and have subsequently developed various analytical systems utilizing the functionality of ice. This review focuses our attention on the analytical facets of ice containing impurities such as salts; hereinafter, we call this "doped ice". The design of novel separation systems and use as microreactors with doped ice are mainly discussed.

Initiation of the ice phase by marine biogenic surfaces in supersaturated gas and supercooled aqueous phases.

PubMed

Alpert, Peter A; Aller, Josephine Y; Knopf, Daniel A

2011-11-28

Biogenic particles have the potential to affect the formation of ice crystals in the atmosphere with subsequent consequences for the hydrological cycle and climate. We present laboratory observations of heterogeneous ice nucleation in immersion and deposition modes under atmospherically relevant conditions initiated by Nannochloris atomus and Emiliania huxleyi, marine phytoplankton with structurally and chemically distinct cell walls. Temperatures at which freezing, melting, and water uptake occur are observed using optical microscopy. The intact and fragmented unarmoured cells of N. atomus in aqueous NaCl droplets enhance ice nucleation by 10-20 K over the homogeneous freezing limit and can be described by a modified water activity based ice nucleation approach. E. huxleyi cells covered by calcite plates do not enhance droplet freezing temperatures. Both species nucleate ice in the deposition mode at an ice saturation ratio, S(ice), as low as ~1.2 and below 240 K, however, for each, different nucleation modes occur at warmer temperatures. These observations show that markedly different biogenic surfaces have both comparable and contrasting effects on ice nucleation behaviour depending on the presence of the aqueous phase and the extent of supercooling and water vapour supersaturation. We derive heterogeneous ice nucleation rate coefficients, J(het), and cumulative ice nuclei spectra, K, for quantification and analysis using time-dependent and time-independent approaches, respectively. Contact angles, α, derived from J(het)via immersion freezing depend on T, a(w), and S(ice). For deposition freezing, α can be described as a function of S(ice) only. The different approaches yield different predictions of atmospheric ice crystal numbers primarily due to the time evolution allowed for the time-dependent approach with implications for the evolution of mixed-phase and ice clouds.

Ice-Crystal Fallstreaks from Supercooled Liquid Water Parent Clouds

NASA Technical Reports Server (NTRS)

Campbell, James R.; O'C. Starr, David; Welton, Ellsworth J.; Spinhirne, James D.; Ferrare, Richard A.

2003-01-01

On 31 December 2001, ice-crystal fallstreaks (e.g., cirrus uncinus, or colloquially "Mare's Tails") from supercooled liquid water parent clouds were observed by ground-based lidars pointed vertically from the Atmospheric Radiation Measurement Southern Great Plains (SGP) facility near Lamont, Oklahoma. The incidence of liquid phase cloud with apparent ice-phase precipitation is investigated. Scenarios for mixed-phase particle nucleation, and fallstreak formation and sustenance are discussed. The observations are unique in the context of the historical reverence given to the commonly observed c h s uncinus fallstreak (wholly ice) versus this seemingly contradictory coincidence of liquid water begetting ice-crystal streaks.

Development and Utility of a Piloted Flight Simulator for Icing Effects Training

NASA Technical Reports Server (NTRS)

Ratvasky, Thomas P.; Ranaudo, Richard J.; Barnhart, Billy P.; Dickes, Edward G.; Gingras, David R.

2003-01-01

A piloted flight simulator called the Ice Contamination Effects Flight Training Device (ICEFTD), which uses low cost desktop components and a generic cockpit replication is being developed. The purpose of this device is to demonstrate the effectiveness of its use for training pilots to recognize and recover from aircraft handling anomalies that result from airframe ice formations. High-fidelity flight simulation models for various baseline (non-iced) and iced configurations were developed from wind tunnel tests of a subscale DeHavilland DHC-6 Twin Otter aircraft model. These simulation models were validated with flight test data from the NASA Twin Otter Icing Research Aircraft, which included the effects of ice on wing and tail stall characteristics. These simulation models are being implemented into an ICEFTD that will provide representative aircraft characteristics due to airframe icing. Scenario-based exercises are being constructed to give an operational-flavor to the simulation. Training pilots will learn to recognize iced aircraft characteristics from the baseline, and will practice and apply appropriate recovery procedures to a handling event.

The Gaseous Phase as a Probe of the Astrophysical Solid Phase Chemistry

NASA Astrophysics Data System (ADS)

Abou Mrad, Ninette; Duvernay, Fabrice; Isnard, Robin; Chiavassa, Thierry; Danger, Grégoire

2017-09-01

In support of space missions and spectroscopic observations, laboratory experiments on ice analogs enable a better understanding of organic matter formation and evolution in astrophysical environments. Herein, we report the monitoring of the gaseous phase of processed astrophysical ice analogs to determine if the gaseous phase can elucidate the chemical mechanisms and dominant reaction pathways occurring in the solid ice subjected to vacuum ultra-violet (VUV) irradiation at low temperature and subsequently warmed. Simple (CH3OH), binary (H2O:CH3OH, CH3OH:NH3), and ternary ice analogs (H2O:CH3OH:NH3) were VUV-processed and warmed. The evolution of volatile organic compounds in the gaseous phase shows a direct link between their relative abundances in the gaseous phase, and the radical and thermal chemistries modifying the initial ice composition. The correlation between the gaseous and solid phases may play a crucial role in deciphering the organic composition of astrophysical objects. As an example, possible solid compositions of the comet Lovejoy are suggested using the abundances of organics in its comae.

The phase diagram of water at negative pressures: virtual ices.

PubMed

Conde, M M; Vega, C; Tribello, G A; Slater, B

2009-07-21

The phase diagram of water at negative pressures as obtained from computer simulations for two models of water, TIP4P/2005 and TIP5P is presented. Several solid structures with lower densities than ice Ih, so-called virtual ices, were considered as possible candidates to occupy the negative pressure region of the phase diagram of water. In particular the empty hydrate structures sI, sII, and sH and another, recently proposed, low-density ice structure. The relative stabilities of these structures at 0 K was determined using empirical water potentials and density functional theory calculations. By performing free energy calculations and Gibbs-Duhem integration the phase diagram of TIP4P/2005 was determined at negative pressures. The empty hydrates sII and sH appear to be the stable solid phases of water at negative pressures. The phase boundary between ice Ih and sII clathrate occurs at moderate negative pressures, while at large negative pressures sH becomes the most stable phase. This behavior is in reasonable agreement with what is observed in density functional theory calculations.

Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei.

PubMed

Bass, Hank W; Hoffman, Gregg G; Lee, Tae-Jin; Wear, Emily E; Joseph, Stacey R; Allen, George C; Hanley-Bowdoin, Linda; Thompson, William F

2015-11-01

Spatiotemporal patterns of DNA replication have been described for yeast and many types of cultured animal cells, frequently after cell cycle arrest to aid in synchronization. However, patterns of DNA replication in nuclei from plants or naturally developing organs remain largely uncharacterized. Here we report findings from 3D quantitative analysis of DNA replication and endoreduplication in nuclei from pulse-labeled developing maize root tips. In both early and middle S phase nuclei, flow-sorted on the basis of DNA content, replicative labeling was widely distributed across euchromatic regions of the nucleoplasm. We did not observe the perinuclear or perinucleolar replicative labeling patterns characteristic of middle S phase in mammals. Instead, the early versus middle S phase patterns in maize could be distinguished cytologically by correlating two quantitative, continuous variables, replicative labeling and DAPI staining. Early S nuclei exhibited widely distributed euchromatic labeling preferentially localized to regions with weak DAPI signals. Middle S nuclei also exhibited widely distributed euchromatic labeling, but the label was preferentially localized to regions with strong DAPI signals. Highly condensed heterochromatin, including knobs, replicated during late S phase as previously reported. Similar spatiotemporal replication patterns were observed for both mitotic and endocycling maize nuclei. These results revealed that maize euchromatin exists as an intermingled mixture of two components distinguished by their condensation state and replication timing. These different patterns might reflect a previously described genome organization pattern, with "gene islands" mostly replicating during early S phase followed by most of the intergenic repetitive regions replicating during middle S phase.

Ultrasonic emissions during ice nucleation and propagation in plant xylem.

PubMed

Charrier, Guillaume; Pramsohler, Manuel; Charra-Vaskou, Katline; Saudreau, Marc; Améglio, Thierry; Neuner, Gilbert; Mayr, Stefan

2015-08-01

Ultrasonic acoustic emission analysis enables nondestructive monitoring of damage in dehydrating or freezing plant xylem. We studied acoustic emissions (AE) in freezing stems during ice nucleation and propagation, by combining acoustic and infrared thermography techniques and controlling the ice nucleation point. Ultrasonic activity in freezing samples of Picea abies showed two distinct phases: the first on ice nucleation and propagation (up to 50 AE s(-1) ; reversely proportional to the distance to ice nucleation point), and the second (up to 2.5 AE s(-1) ) after dissipation of the exothermal heat. Identical patterns were observed in other conifer and angiosperm species. The complex AE patterns are explained by the low water potential of ice at the ice-liquid interface, which induced numerous and strong signals. Ice propagation velocities were estimated via AE (during the first phase) and infrared thermography. Acoustic activity ceased before the second phase probably because the exothermal heating and the volume expansion of ice caused decreasing tensions. Results indicate cavitation events at the ice front leading to AE. Ultrasonic emission analysis enabled new insights into the complex process of xylem freezing and might be used to monitor ice propagation in natura. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

A 4-D dataset for validation of crystal growth in a complex three-phase material, ice cream

NASA Astrophysics Data System (ADS)

Rockett, P.; Karagadde, S.; Guo, E.; Bent, J.; Hazekamp, J.; Kingsley, M.; Vila-Comamala, J.; Lee, P. D.

2015-06-01

Four dimensional (4D, or 3D plus time) X-ray tomographic imaging of phase changes in materials is quickly becoming an accepted tool for quantifying the development of microstructures to both inform and validate models. However, most of the systems studied have been relatively simple binary compositions with only two phases. In this study we present a quantitative dataset of the phase evolution in a complex three-phase material, ice cream. The microstructure of ice cream is an important parameter in terms of sensorial perception, and therefore quantification and modelling of the evolution of the microstructure with time and temperature is key to understanding its fabrication and storage. The microstructure consists of three phases, air cells, ice crystals, and unfrozen matrix. We perform in situ synchrotron X-ray imaging of ice cream samples using in-line phase contrast tomography, housed within a purpose built cold-stage (-40 to +20oC) with finely controlled variation in specimen temperature. The size and distribution of ice crystals and air cells during programmed temperature cycling are determined using 3D quantification. The microstructural evolution of three-phase materials has many other important applications ranging from biological to structural and functional material, hence this dataset can act as a validation case for numerical investigations on faceted and non-faceted crystal growth in a range of materials.

Microphysical and macrophysical characteristics of ice and mixed-phase clouds compared between in-situ observations from the NSF ORCAS campaign and the NCAR Community Atmospheric Model

NASA Astrophysics Data System (ADS)

Diao, M.; D'Alessandro, J.; Wu, C.; Liu, X.; Jensen, J. B.

2016-12-01

Large spatial coverage of ice and mixed-phase clouds is frequently observed in the higher latitudinal regions, especially over the Arctic and Antarctica. However, because the microphysical properties in the ice and mixed-phase clouds are highly variable in space, major challenges still remain in understanding the characteristics of ice and mixed-phase clouds on the microscale, as well as representing the sub-grid scale variabilities of relative humidity in the General Circulation Models. In this work, we use the in-situ, airborne observations from the NSF O2/N2 Ratio and CO2 Airborne Southern Ocean (ORCAS) Study (January - February 2016) to analyze the microphysical and macrophysical characteristics of ice and mixed-phase clouds over the Southern Ocean. A total of 18 flights onboard the NSF Gulfstream-V research aircraft are used to quantify the cloud properties and relative humidity distributions at various temperatures, pressures and aerosol background. New QC/QA water vapor data of the Vertical Cavity Surface Emitting Laser based on the laboratory calibration in summer 2016 will be presented. The statistical distributions of cloud microphysical properties and relative humidity with respect to ice (RHi) derived from in-situ observations will be compared with the NCAR Community Atmospheric Model Version 5 (CAM5). The horizontal extent of ice and mixed-phase clouds, and their formation and evolution will be derived based on the method of Diao et al. (2013). The occurrence frequency of ice supersaturation (i.e., RHi > 100%) will be examined in relation to various chemical tracers (i.e., O3 and CO) and total aerosol number concentrations (e.g., aerosols > 0.1 μm and > 0.5 μm) at clear-sky and in-cloud conditions. We will quantify whether these characteristics of ISS are scale-dependent from the microscale to the mesoscale. Overall, our work will evaluate the spatial variabilities of RHi inside/outside of ice and mixed-phase clouds, the frequency and magnitude of ice supersaturation, as well as the correlations between ice water content and liquid water content in the CAM5 simulations.

Raman spectroscopic study of hydrogen ordered ice XIII and of its reversible phase transition to disordered ice V.

PubMed

Salzmann, Christoph G; Hallbrucker, Andreas; Finney, John L; Mayer, Erwin

2006-07-14

Raman spectra of recovered ordered H(2)O (D(2)O) ice XIII doped with 0.01 M HCl (DCl) recorded in vacuo at 80 K are reported in the range 3600-200 cm(-1). The bands are assigned to the various types of modes on the basis of isotope ratios. On thermal cycling between 80 and 120 K, the reversible phase transition to disordered ice V is observed. The remarkable effect of HCl (DCl) on orientational ordering in ice V and its phase transition to ordered ice XIII, first reported in a powder neutron diffraction study of DCl doped D(2)O ice V (C. G. Salzmann, P. G. Radaelli, A. Hallbrucker, E. Mayer, J. L. Finney, Science, 2006, 311, 1758), is demonstrated by Raman spectroscopy and discussed. The dopants KOH and HF have only a minor effect on hydrogen ordering in ice V, as shown by the Raman spectra.

Water/ice phase transition: The role of zirconium acetate, a compound with ice-shaping properties

NASA Astrophysics Data System (ADS)

Marcellini, Moreno; Fernandes, Francisco M.; Dedovets, Dmytro; Deville, Sylvain

2017-04-01

Few compounds feature ice-shaping properties. Zirconium acetate is one of the very few inorganic compounds reported so far to have ice-shaping properties similar to that of ice-shaping proteins, encountered in many organisms living at low temperature. When a zirconium acetate solution is frozen, oriented and perfectly hexagonal ice crystals can be formed and their growth follows the temperature gradient. To shed light on the water/ice phase transition while freezing zirconium acetate solution, we carried out differential scanning calorimetry measurements. From our results, we estimate how many water molecules do not freeze because of their interaction with Zr cations. We estimate the colligative properties of the Zr acetate on the apparent critical temperature. We further show that the phase transition is unaffected by the nature of the base which is used to adjust the pH. Our results provide thus new hints on the ice-shaping mechanism of zirconium acetate.

Water/ice phase transition: The role of zirconium acetate, a compound with ice-shaping properties.

PubMed

Marcellini, Moreno; Fernandes, Francisco M; Dedovets, Dmytro; Deville, Sylvain

2017-04-14

Few compounds feature ice-shaping properties. Zirconium acetate is one of the very few inorganic compounds reported so far to have ice-shaping properties similar to that of ice-shaping proteins, encountered in many organisms living at low temperature. When a zirconium acetate solution is frozen, oriented and perfectly hexagonal ice crystals can be formed and their growth follows the temperature gradient. To shed light on the water/ice phase transition while freezing zirconium acetate solution, we carried out differential scanning calorimetry measurements. From our results, we estimate how many water molecules do not freeze because of their interaction with Zr cations. We estimate the colligative properties of the Zr acetate on the apparent critical temperature. We further show that the phase transition is unaffected by the nature of the base which is used to adjust the pH. Our results provide thus new hints on the ice-shaping mechanism of zirconium acetate.

Replication dynamics of the yeast genome.

PubMed

Raghuraman, M K; Winzeler, E A; Collingwood, D; Hunt, S; Wodicka, L; Conway, A; Lockhart, D J; Davis, R W; Brewer, B J; Fangman, W L

2001-10-05

Oligonucleotide microarrays were used to map the detailed topography of chromosome replication in the budding yeast Saccharomyces cerevisiae. The times of replication of thousands of sites across the genome were determined by hybridizing replicated and unreplicated DNAs, isolated at different times in S phase, to the microarrays. Origin activations take place continuously throughout S phase but with most firings near mid-S phase. Rates of replication fork movement vary greatly from region to region in the genome. The two ends of each of the 16 chromosomes are highly correlated in their times of replication. This microarray approach is readily applicable to other organisms, including humans.

Sensitivity of Cirrus and Mixed-phase Clouds to the Ice Nuclei Spectra in McRAS-AC: Single Column Model Simulations

NASA Technical Reports Server (NTRS)

Betancourt, R. Morales; Lee, D.; Oreopoulos, L.; Sud, Y. C.; Barahona, D.; Nenes, A.

2012-01-01

The salient features of mixed-phase and ice clouds in a GCM cloud scheme are examined using the ice formation parameterizations of Liu and Penner (LP) and Barahona and Nenes (BN). The performance of LP and BN ice nucleation parameterizations were assessed in the GEOS-5 AGCM using the McRAS-AC cloud microphysics framework in single column mode. Four dimensional assimilated data from the intensive observation period of ARM TWP-ICE campaign was used to drive the fluxes and lateral forcing. Simulation experiments where established to test the impact of each parameterization in the resulting cloud fields. Three commonly used IN spectra were utilized in the BN parameterization to described the availability of IN for heterogeneous ice nucleation. The results show large similarities in the cirrus cloud regime between all the schemes tested, in which ice crystal concentrations were within a factor of 10 regardless of the parameterization used. In mixed-phase clouds there are some persistent differences in cloud particle number concentration and size, as well as in cloud fraction, ice water mixing ratio, and ice water path. Contact freezing in the simulated mixed-phase clouds contributed to transfer liquid to ice efficiently, so that on average, the clouds were fully glaciated at T approximately 260K, irrespective of the ice nucleation parameterization used. Comparison of simulated ice water path to available satellite derived observations were also performed, finding that all the schemes tested with the BN parameterization predicted 20 average values of IWP within plus or minus 15% of the observations.

Metastable Nitric Acid Trihydrate in Ice Clouds.

PubMed

Weiss, Fabian; Kubel, Frank; Gálvez, Óscar; Hoelzel, Markus; Parker, Stewart F; Baloh, Philipp; Iannarelli, Riccardo; Rossi, Michel J; Grothe, Hinrich

2016-03-01

The composition of high-altitude ice clouds is still a matter of intense discussion. The constituents in question are ice and nitric acid hydrates, but the exact phase composition of clouds and its formation mechanisms are still unknown. In this work, conclusive evidence for a long-predicted phase, alpha-nitric acid trihydrate (alpha-NAT), is presented. This phase was characterized by a combination of X-ray and neutron diffraction experiments, allowing a convincing structure solution. Furthermore, vibrational spectra (infrared and inelastic neutron scattering) were recorded and compared with theoretical calculations. A strong interaction between water ice and alpha-NAT was found, which explains the experimental spectra and the phase-transition kinetics. On the basis of these results, we propose a new three-step mechanism for NAT formation in high-altitude ice clouds. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Simulating mixed-phase Arctic stratus clouds: sensitivity to ice initiation mechanisms

NASA Astrophysics Data System (ADS)

Sednev, I.; Menon, S.; McFarquhar, G.

2008-06-01

The importance of Arctic mixed-phase clouds on radiation and the Arctic climate is well known. However, the development of mixed-phase cloud parameterization for use in large scale models is limited by lack of both related observations and numerical studies using multidimensional models with advanced microphysics that provide the basis for understanding the relative importance of different microphysical processes that take place in mixed-phase clouds. To improve the representation of mixed-phase cloud processes in the GISS GCM we use the GISS single-column model coupled to a bin resolved microphysics (BRM) scheme that was specially designed to simulate mixed-phase clouds and aerosol-cloud interactions. Using this model with the microphysical measurements obtained from the DOE ARM Mixed-Phase Arctic Cloud Experiment (MPACE) campaign in October 2004 at the North Slope of Alaska, we investigate the effect of ice initiation processes and Bergeron-Findeisen process (BFP) on glaciation time and longevity of single-layer stratiform mixed-phase clouds. We focus on observations taken during 9th-10th October, which indicated the presence of a single-layer mixed-phase clouds. We performed several sets of 12-h simulations to examine model sensitivity to different ice initiation mechanisms and evaluate model output (hydrometeors' concentrations, contents, effective radii, precipitation fluxes, and radar reflectivity) against measurements from the MPACE Intensive Observing Period. Overall, the model qualitatively simulates ice crystal concentration and hydrometeors content, but it fails to predict quantitatively the effective radii of ice particles and their vertical profiles. In particular, the ice effective radii are overestimated by at least 50%. However, using the same definition as used for observations, the effective radii simulated and that observed were more comparable. We find that for the single-layer stratiform mixed-phase clouds simulated, process of ice phase initiation due to freezing of supercooled water in both saturated and undersaturated (w.r.t. water) environments is as important as primary ice crystal origination from water vapor. We also find that the BFP is a process mainly responsible for the rates of glaciation of simulated clouds. These glaciation rates cannot be adequately represented by a water-ice saturation adjustment scheme that only depends on temperature and liquid and solid hydrometeors' contents as is widely used in bulk microphysics schemes and are better represented by processes that also account for supersaturation changes as the hydrometeors grow.

Simulating mixed-phase Arctic stratus clouds: sensitivity to ice initiation mechanisms

NASA Astrophysics Data System (ADS)

Sednev, I.; Menon, S.; McFarquhar, G.

2009-07-01

The importance of Arctic mixed-phase clouds on radiation and the Arctic climate is well known. However, the development of mixed-phase cloud parameterization for use in large scale models is limited by lack of both related observations and numerical studies using multidimensional models with advanced microphysics that provide the basis for understanding the relative importance of different microphysical processes that take place in mixed-phase clouds. To improve the representation of mixed-phase cloud processes in the GISS GCM we use the GISS single-column model coupled to a bin resolved microphysics (BRM) scheme that was specially designed to simulate mixed-phase clouds and aerosol-cloud interactions. Using this model with the microphysical measurements obtained from the DOE ARM Mixed-Phase Arctic Cloud Experiment (MPACE) campaign in October 2004 at the North Slope of Alaska, we investigate the effect of ice initiation processes and Bergeron-Findeisen process (BFP) on glaciation time and longevity of single-layer stratiform mixed-phase clouds. We focus on observations taken during 9-10 October, which indicated the presence of a single-layer mixed-phase clouds. We performed several sets of 12-h simulations to examine model sensitivity to different ice initiation mechanisms and evaluate model output (hydrometeors' concentrations, contents, effective radii, precipitation fluxes, and radar reflectivity) against measurements from the MPACE Intensive Observing Period. Overall, the model qualitatively simulates ice crystal concentration and hydrometeors content, but it fails to predict quantitatively the effective radii of ice particles and their vertical profiles. In particular, the ice effective radii are overestimated by at least 50%. However, using the same definition as used for observations, the effective radii simulated and that observed were more comparable. We find that for the single-layer stratiform mixed-phase clouds simulated, process of ice phase initiation due to freezing of supercooled water in both saturated and subsaturated (w.r.t. water) environments is as important as primary ice crystal origination from water vapor. We also find that the BFP is a process mainly responsible for the rates of glaciation of simulated clouds. These glaciation rates cannot be adequately represented by a water-ice saturation adjustment scheme that only depends on temperature and liquid and solid hydrometeors' contents as is widely used in bulk microphysics schemes and are better represented by processes that also account for supersaturation changes as the hydrometeors grow.

Communication: Hypothetical ultralow-density ice polymorphs

NASA Astrophysics Data System (ADS)

Matsui, Takahiro; Hirata, Masanori; Yagasaki, Takuma; Matsumoto, Masakazu; Tanaka, Hideki

2017-09-01

More than 300 kinds of porous ice structures derived from zeolite frameworks and space fullerenes are examined using classical molecular dynamics simulations. It is found that a hypothetical zeolitic ice phase is less dense and more stable than the sparse ice structures reported by Huang et al. [Chem. Phys. Lett. 671, 186 (2017)]. In association with the zeolitic ice structure, even less dense structures, "aeroices," are proposed. It is found that aeroices are the most stable solid phases of water near the absolute zero temperature under negative pressure.

Ice cream structural elements that affect melting rate and hardness.

PubMed

Muse, M R; Hartel, R W

2004-01-01

Statistical models were developed to reveal which structural elements of ice cream affect melting rate and hardness. Ice creams were frozen in a batch freezer with three types of sweetener, three levels of the emulsifier polysorbate 80, and two different draw temperatures to produce ice creams with a range of microstructures. Ice cream mixes were analyzed for viscosity, and finished ice creams were analyzed for air cell and ice crystal size, overrun, and fat destabilization. The ice phase volume of each ice cream were calculated based on the freezing point of the mix. Melting rate and hardness of each hardened ice cream was measured and correlated with the structural attributes by using analysis of variance and multiple linear regression. Fat destabilization, ice crystal size, and the consistency coefficient of the mix were found to affect the melting rate of ice cream, whereas hardness was influenced by ice phase volume, ice crystal size, overrun, fat destabilization, and the rheological properties of the mix.

Partial phase diagram for the system NH3-H2O - The water-rich region

NASA Technical Reports Server (NTRS)

Johnson, M. L.; Schwake, A.; Nicol, M.

1984-01-01

Phase boundaries of the H2O-NH3 system for (NH3)/x/(H2O)/1-x/ have been determined with diamond-anvil cells for mixtures in two composition ranges: (1) for x in the range from 0 to 0.3, at pressures up to 4 GPa at 21 C, and (2) for x in the range from 0.46 to 0.50, at pressures up to 5 GPa from 150 to 400 K. Phases were identified visually with a microscope and polarized optics. The NH3.2(H2O) phase is strongly anisotropic with a much smaller refractive index than that of ice VII and cracks in two nonperpendicular networks. NH3.H2O has a refractive index closer to that of Ice VII and does not appear to form cracks. Both phases are colorless. Phase boundaries were determined on both increasing and decreasing pressures, and compositions of the ammonia ices were determined by estimating relative amounts of water and ammonia ices at known overall compositions. For low-ammonia compositions (x equal to or less than 0.15), the following assemblages succedd one another as pressure increases: liquid; liquid and Ice VI (at 1.0 + GPa); liquid and Ice VII (at 2.1 GPa); Ice VII and NH3.H2O (at 3.5 GPa). For x in the range from 0.15 to 0.30, the water ice and liquid fields are replaced by the NH3.2(H2O) and liquid field at pressures down to 1.0 GPa and lower.

Response of mixed-phase boundary layer clouds with rapid and slow ice nucleation processes to cloud-top temperature trend

NASA Astrophysics Data System (ADS)

Fridlind, A. M.; Avramov, A.; Ackerman, A. S.; Alpert, P. A.; Knopf, D. A.; DeMott, P. J.; Brooks, S. D.; Glen, A.

2015-12-01

It has been argued on the basis of some laboratory data sets, observed mixed-phase cloud systems, and numerical modeling studies that weakly active or slowly consumed ice forming nuclei (IFN) may be important to natural cloud systems. It has also been argued on the basis of field measurements that ice nucleation under mixed-phase conditions appears to occur predominantly via a liquid-phase mechanism, requiring the presence of liquid droplets prior to substantial ice nucleation. Here we analyze the response of quasi-Lagrangian large-eddy simulations of mixed-phase cloud layers to IFN operating via a liquid-phase mode using assumptions that result in either slow or rapid depletion of IFN from the cloudy boundary layer. Using several generalized case studies that do not exhibit riming or drizzle, based loosely on field campaign data, we vary environmental conditions such that the cloud-top temperature trend varies. One objective of this work is to identify differing patterns in ice formation intensity that may be distinguishable from ground-based or satellite platforms.

The Gaseous Phase as a Probe of the Astrophysical Solid Phase Chemistry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abou Mrad, Ninette; Duvernay, Fabrice; Isnard, Robin

2017-09-10

In support of space missions and spectroscopic observations, laboratory experiments on ice analogs enable a better understanding of organic matter formation and evolution in astrophysical environments. Herein, we report the monitoring of the gaseous phase of processed astrophysical ice analogs to determine if the gaseous phase can elucidate the chemical mechanisms and dominant reaction pathways occurring in the solid ice subjected to vacuum ultra-violet (VUV) irradiation at low temperature and subsequently warmed. Simple (CH{sub 3}OH), binary (H{sub 2}O:CH{sub 3}OH, CH{sub 3}OH:NH{sub 3}), and ternary ice analogs (H{sub 2}O:CH{sub 3}OH:NH{sub 3}) were VUV-processed and warmed. The evolution of volatile organic compoundsmore » in the gaseous phase shows a direct link between their relative abundances in the gaseous phase, and the radical and thermal chemistries modifying the initial ice composition. The correlation between the gaseous and solid phases may play a crucial role in deciphering the organic composition of astrophysical objects. As an example, possible solid compositions of the comet Lovejoy are suggested using the abundances of organics in its comae.« less

Phase transformation of mixed-phase clouds

NASA Astrophysics Data System (ADS)

Korolev, Alexei; Isaac, George

2003-01-01

The glaciation time of a mixed-phase cloud due to the Wegener-Bergeron-Findeisen mechanism is calculated using an adiabatic one-dimensional numerical model for the cases of zero, ascending, descending and oscillating vertical velocities. The characteristic values of the glaciation time are obtained for different concentrations of ice particles and liquid-water content. Steady state is not possible for the ice-water content/total water content ratio in a uniformly vertically moving mixed-phase parcel. The vertical oscillation of a cloud parcel may result in a periodic evaporation and activation of liquid droplets in the presence of ice particles during infinite time. After a certain time, the average ice-water content and liquid-water content reach a steady state. This phenomenon may explain the existence of long-lived mixed-phase stratiform layers. The obtained results are important for understanding the mechanisms of formation and life cycle of mixed-phase clouds.

The Temporal Regulation of S Phase Proteins During G1

PubMed Central

Grant, Gavin D.; Cook, Jeanette G.

2018-01-01

Successful DNA replication requires intimate coordination with cell cycle progression. Prior to DNA replication initiation in S phase, a series of essential preparatory events in G1 phase ensures timely, complete, and precise genome duplication. Among the essential molecular processes are regulated transcriptional upregulation of genes that encode replication proteins, appropriate post-transcriptional control of replication factor abundance and activity, and the assembly of DNA-loaded protein complexes to license replication origins. In this chapter we describe these critical G1 events necessary for DNA replication and their regulation in the context of both cell cycle entry and cell cycle progression. PMID:29357066

Ice crystallization in ultrafine water-salt aerosols: nucleation, ice-solution equilibrium, and internal structure.

PubMed

Hudait, Arpa; Molinero, Valeria

2014-06-04

Atmospheric aerosols have a strong influence on Earth's climate. Elucidating the physical state and internal structure of atmospheric aqueous aerosols is essential to predict their gas and water uptake, and the locus and rate of atmospherically important heterogeneous reactions. Ultrafine aerosols with sizes between 3 and 15 nm have been detected in large numbers in the troposphere and tropopause. Nanoscopic aerosols arising from bubble bursting of natural and artificial seawater have been identified in laboratory and field experiments. The internal structure and phase state of these aerosols, however, cannot yet be determined in experiments. Here we use molecular simulations to investigate the phase behavior and internal structure of liquid, vitrified, and crystallized water-salt ultrafine aerosols with radii from 2.5 to 9.5 nm and with up to 10% moles of ions. We find that both ice crystallization and vitrification of the nanodroplets lead to demixing of pure water from the solutions. Vitrification of aqueous nanodroplets yields nanodomains of pure low-density amorphous ice in coexistence with vitrified solute rich aqueous glass. The melting temperature of ice in the aerosols decreases monotonically with an increase of solute fraction and decrease of radius. The simulations reveal that nucleation of ice occurs homogeneously at the subsurface of the water-salt nanoparticles. Subsequent ice growth yields phase-segregated, internally mixed, aerosols with two phases in equilibrium: a concentrated water-salt amorphous mixture and a spherical cap-like ice nanophase. The surface of the crystallized aerosols is heterogeneous, with ice and solution exposed to the vapor. Free energy calculations indicate that as the concentration of salt in the particles, the advance of the crystallization, or the size of the particles increase, the stability of the spherical cap structure increases with respect to the alternative structure in which a core of ice is fully surrounded by solution. We predict that micrometer-sized particles and nanoparticles have the same equilibrium internal structure. The variation of liquid-vapor surface tension with solute concentration is a key factor in determining whether a solution-embedded ice core or vapor-exposed ice cap is the equilibrium structure of the aerosols. In agreement with experiments, we predict that the structure of mixed-phase HNO3-water particles, representative of polar stratospheric clouds, consists of an ice core surrounded by freeze-concentrated solution. The results of this work are important to determine the phase state and internal structure of sea spray ultrafine aerosols and other mixed-phase particles under atmospherically relevant conditions.

Site Scientist for the North Slope of Alaska Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Verlinde, Johannes

2016-03-11

Under this grant our team contributed scientific support to the Department of Energy Atmospheric Radiation Program’s (DOE-ARM) Infrastructure team to maintain high quality research data at the DOE-ARM North Slope of Alaska with special emphasis on the radars. Under our guidance two major field campaigns focusing on mixed-phase Arctic clouds were conducted that greatly increased the community’s understanding of the many processes working together to control the evolution of single-layer cloud mixed-phase clouds. A series of modeling and observational studies revealed that the longevity of the radiatively important liquid phase is strongly dependent on how the ice phase develops inmore » mixed-phase clouds. A new ice microphysics parameterization was developed to capture better the natural evolution of ice particle growth in evolving environments. An ice particle scattering database was developed for all ARM radar frequencies. This database was used in a radar simulator (Doppler spectrum and polarimetric variables) to aid in the interpretation of the advanced ARM radars. At the conclusion of this project our team was poised to develop a complete radar simulator consistent with the new microphysical parameterization, taking advantage of parameterization’s advanced characterization of the ice shape and ice density.« less

Effects of a type I antifreeze protein (AFP) on the melting of frozen AFP and AFP+solute aqueous solutions studied by NMR microimaging experiment.

PubMed

Ba, Yong; Mao, Yougang; Galdino, Luiz; Günsen, Zorigoo

2013-01-01

The effects of a type I AFP on the bulk melting of frozen AFP solutions and frozen AFP+solute solutions were studied through an NMR microimaging experiment. The solutes studied include sodium chloride and glucose and the amino acids alanine, threonine, arginine, and aspartic acid. We found that the AFP is able to induce the bulk melting of the frozen AFP solutions at temperatures lower than 0 °C and can also keep the ice melted at higher temperatures in the AFP+solute solutions than those in the corresponding solute solutions. The latter shows that the ice phases were in super-heated states in the frozen AFP+solute solutions. We have tried to understand the first experimental phenomenon via the recent theoretical prediction that type I AFP can induce the local melting of ice upon adsorption to ice surfaces. The latter experimental phenomenon was explained with the hypothesis that the adsorption of AFP to ice surfaces introduces a less hydrophilic water-AFP-ice interfacial region, which repels the ionic/hydrophilic solutes. Thus, this interfacial region formed an intermediate chemical potential layer between the water phase and the ice phase, which prevented the transfer of water from the ice phase to the water phase. We have also attempted to understand the significance of the observed melting phenomena to the survival of organisms that express AFPs over cold winters.

Ice Accretion Measurements on an Airfoil and Wedge in Mixed-Phase Conditions

NASA Technical Reports Server (NTRS)

Struk, Peter; Bartkus, Tadas; Tsao, Jen-Ching; Currie, Tom; Fuleki, Dan

2015-01-01

This paper describes ice accretion measurements from experiments conducted at the National Research Council (NRC) of Canada's Research Altitude Test Facility during 2012. Due to numerous engine power loss events associated with high altitude convective weather, potential ice accretion within an engine due to ice crystal ingestion is being investigated collaboratively by NASA and NRC. These investigations examine the physical mechanisms of ice accretion on surfaces exposed to ice crystal and mixed phase conditions, similar to those believed to exist in core compressor regions of jet engines. A further objective of these tests is to examine scaling effects since altitude appears to play a key role in this icing process.

Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips[OPEN

PubMed Central

LeBlanc, Chantal; Lee, Tae-Jin; Mulvaney, Patrick; Allen, George C.; Martienssen, Robert A.; Thompson, William F.

2017-01-01

All plants and animals must replicate their DNA, using a regulated process to ensure that their genomes are completely and accurately replicated. DNA replication timing programs have been extensively studied in yeast and animal systems, but much less is known about the replication programs of plants. We report a novel adaptation of the “Repli-seq” assay for use in intact root tips of maize (Zea mays) that includes several different cell lineages and present whole-genome replication timing profiles from cells in early, mid, and late S phase of the mitotic cell cycle. Maize root tips have a complex replication timing program, including regions of distinct early, mid, and late S replication that each constitute between 20 and 24% of the genome, as well as other loci corresponding to ∼32% of the genome that exhibit replication activity in two different time windows. Analyses of genomic, transcriptional, and chromatin features of the euchromatic portion of the maize genome provide evidence for a gradient of early replicating, open chromatin that transitions gradually to less open and less transcriptionally active chromatin replicating in mid S phase. Our genomic level analysis also demonstrated that the centromere core replicates in mid S, before heavily compacted classical heterochromatin, including pericentromeres and knobs, which replicate during late S phase. PMID:28842533

Ice phase in altocumulus clouds over Leipzig: remote sensing observations and detailed modeling

NASA Astrophysics Data System (ADS)

Simmel, M.; Bühl, J.; Ansmann, A.; Tegen, I.

2015-09-01

The present work combines remote sensing observations and detailed cloud modeling to investigate two altocumulus cloud cases observed over Leipzig, Germany. A suite of remote sensing instruments was able to detect primary ice at rather high temperatures of -6 °C. For comparison, a second mixed phase case at about -25 °C is introduced. To further look into the details of cloud microphysical processes, a simple dynamics model of the Asai-Kasahara (AK) type is combined with detailed spectral microphysics (SPECS) forming the model system AK-SPECS. Vertical velocities are prescribed to force the dynamics, as well as main cloud features, to be close to the observations. Subsequently, sensitivity studies with respect to ice microphysical parameters are carried out with the aim to quantify the most important sensitivities for the cases investigated. For the cases selected, the liquid phase is mainly determined by the model dynamics (location and strength of vertical velocity), whereas the ice phase is much more sensitive to the microphysical parameters (ice nucleating particle (INP) number, ice particle shape). The choice of ice particle shape may induce large uncertainties that are on the same order as those for the temperature-dependent INP number distribution.

Ice phase in altocumulus clouds over Leipzig: remote sensing observations and detailed modelling

NASA Astrophysics Data System (ADS)

Simmel, M.; Bühl, J.; Ansmann, A.; Tegen, I.

2015-01-01

The present work combines remote sensing observations and detailed cloud modeling to investigate two altocumulus cloud cases observed over Leipzig, Germany. A suite of remote sensing instruments was able to detect primary ice at rather warm temperatures of -6 °C. For comparison, a second mixed phase case at about -25 °C is introduced. To further look into the details of cloud microphysical processes a simple dynamics model of the Asai-Kasahara type is combined with detailed spectral microphysics forming the model system AK-SPECS. Vertical velocities are prescribed to force the dynamics as well as main cloud features to be close to the observations. Subsequently, sensitivity studies with respect to ice microphysical parameters are carried out with the aim to quantify the most important sensitivities for the cases investigated. For the cases selected, the liquid phase is mainly determined by the model dynamics (location and strength of vertical velocity) whereas the ice phase is much more sensitive to the microphysical parameters (ice nuclei (IN) number, ice particle shape). The choice of ice particle shape may induce large uncertainties which are in the same order as those for the temperature-dependent IN number distribution.

Cell Cycle-Dependent Expression of Adeno-Associated Virus 2 (AAV2) Rep in Coinfections with Herpes Simplex Virus 1 (HSV-1) Gives Rise to a Mosaic of Cells Replicating either AAV2 or HSV-1

PubMed Central

Franzoso, Francesca D.; Seyffert, Michael; Vogel, Rebecca; Yakimovich, Artur; de Andrade Pereira, Bruna; Meier, Anita F.; Sutter, Sereina O.; Tobler, Kurt; Vogt, Bernd; Greber, Urs F.; Büning, Hildegard; Ackermann, Mathias

2017-01-01

ABSTRACT Adeno-associated virus 2 (AAV2) depends on the simultaneous presence of a helper virus such as herpes simplex virus 1 (HSV-1) for productive replication. At the same time, AAV2 efficiently blocks the replication of HSV-1, which would eventually limit its own replication by diminishing the helper virus reservoir. This discrepancy begs the question of how AAV2 and HSV-1 can coexist in a cell population. Here we show that in coinfected cultures, AAV2 DNA replication takes place almost exclusively in S/G2-phase cells, while HSV-1 DNA replication is restricted to G1 phase. Live microscopy revealed that not only wild-type AAV2 (wtAAV2) replication but also reporter gene expression from both single-stranded and double-stranded (self-complementary) recombinant AAV2 vectors preferentially occurs in S/G2-phase cells, suggesting that the preference for S/G2 phase is independent of the nature of the viral genome. Interestingly, however, a substantial proportion of S/G2-phase cells transduced by the double-stranded but not the single-stranded recombinant AAV2 vectors progressed through mitosis in the absence of the helper virus. We conclude that cell cycle-dependent AAV2 rep expression facilitates cell cycle-dependent AAV2 DNA replication and inhibits HSV-1 DNA replication. This may limit competition for cellular and viral helper factors and, hence, creates a biological niche for either virus to replicate. IMPORTANCE Adeno-associated virus 2 (AAV2) differs from most other viruses, as it requires not only a host cell for replication but also a helper virus such as an adenovirus or a herpesvirus. This situation inevitably leads to competition for cellular resources. AAV2 has been shown to efficiently inhibit the replication of helper viruses. Here we present a new facet of the interaction between AAV2 and one of its helper viruses, herpes simplex virus 1 (HSV-1). We observed that AAV2 rep gene expression is cell cycle dependent and gives rise to distinct time-controlled windows for HSV-1 replication. High Rep protein levels in S/G2 phase support AAV2 replication and inhibit HSV-1 replication. Conversely, low Rep protein levels in G1 phase permit HSV-1 replication but are insufficient for AAV2 replication. This allows both viruses to productively replicate in distinct sets of dividing cells. PMID:28515305

Effects of ice formation on hydrology and water quality in the lower Bradley River, Alaska; implications for salmon incubation habitat

USGS Publications Warehouse

Rickman, Ronald L.

1998-01-01

A minimum flow of 40 cubic feet per second is required in the lower Bradley River, near Homer, Alaska, from November 2 to April 30 to ensure adequate habitat for salmon incubation. The study that determined this minimum flow did not account for the effects of ice formation on habitat. The limiting factor for determining the minimal acceptable flow limit appears to be stream-water velocity. The minimum short-term flow needed to ensure adequate salmon incubation habitat when ice is present is about 30 cubic feet per second. For long-term flows, 40 cubic feet per second is adequate when ice is present. Long-term minimum discharge needed to ensure adequate incubation habitat--which is based on mean velocity alone--is as follows: 40 cubic feet per second when ice is forming; 35 cubic feet per second for stable and eroding ice conditions; and 30 cubic feet per second for ice-free conditions. The effects of long-term streamflow less than 40 cubic feet per second on fine-sediment deposition and dissolved-oxygen interchange could not be extrapolated from the data. Hydrologic properties and water-quality data were measured in winter only from March 1993 to April 1998 at six transects in the lower Bradley River under three phases of icing: forming, stable, and eroding. Discharge in the lower Bradley River ranged from 33.3 to 73.0 cubic feet per second during all phases of ice formation and ice conditions, which ranged from ice free to 100 percent ice cover. Hydrostatic head was adequate for habitat protection for all ice phases and discharges. Mean stream velocity was adequate for all but one ice-forming episode. Velocity distribution within each transect varied significantly from one sampling period to the next. No relation was found between ice phase, discharge, and wetted perimeter. Intragravel-water temperature was slightly warmer than surface-water temperature. Surface- and intragravel-water dissolved-oxygen levels were adequate for all ice phases and discharges. No apparent relation was found between dissolved-oxygen levels and streamflow or ice conditions. Fine-sediment deposition was greatest at the downstream end of the study reach because of low shear velocities and tide-induced deposition. Dissolved-oxygen interchange was adequate for all discharges and ice conditions. Stranding potential of salmon fry was found to be low throughout the study reach. Minimum flows from the fish-water bypass needed to maintain 40 cubic feet per second in the lower Bradley River are estimated.

High friction on ice provided by elastomeric fiber composites with textured surfaces

NASA Astrophysics Data System (ADS)

Rizvi, R.; Naguib, H.; Fernie, G.; Dutta, T.

2015-03-01

Two main applications requiring high friction on ice are automobile tires and footwear. The main motivation behind the use of soft rubbers in these applications is the relatively high friction force generated between a smooth rubber contacting smooth ice. Unfortunately, the friction force between rubber and ice is very low at temperatures near the melting point of ice and as a result we still experience automobile accidents and pedestrian slips and falls in the winter. Here, we report on a class of compliant fiber-composite materials with textured surfaces that provide outstanding coefficients of friction on wet ice. The fibrous composites consist of a hard glass-fiber phase reinforcing a compliant thermoplastic polyurethane matrix. The glass-fiber phase is textured such that it is aligned transversally and protruding out of the elastomer surface. Our analysis indicates that the exposed fiber phase exhibits a "micro-cleat" effect, allowing for it to fracture the ice and increase the interfacial contact area thereby requiring a high force to shear the interface.

First spaceborne phase altimetry over sea ice using TechDemoSat-1 GNSS-R signals

NASA Astrophysics Data System (ADS)

Li, Weiqiang; Cardellach, Estel; Fabra, Fran; Rius, Antonio; Ribó, Serni; Martín-Neira, Manuel

2017-08-01

A track of sea ice reflected Global Navigation Satellite System (GNSS) signal collected by the TechDemoSat-1 mission is processed to perform phase altimetry over sea ice. High-precision carrier phase measurements are extracted from coherent GNSS reflections at a high angle of elevation (>57°). The altimetric results show good consistency with a mean sea surface (MSS) model, and the root-mean-square difference is 4.7 cm with an along-track sampling distance of ˜140 m and a spatial resolution of ˜400 m. The difference observed between the altimetric results and the MSS shows good correlation with the colocated sea ice thickness data from Soil Moisture and Ocean Salinity. This is consistent with the reflecting surface aligned with the bottom of the ice-water interface, due to the penetration of the GNSS signal into the sea ice. Therefore, these high-precision altimetric results have potential to be used for determination of sea ice thickness.

The potential influence of Asian and African mineral dust on ice, mixed-phase and liquid water clouds

NASA Astrophysics Data System (ADS)

Wiacek, A.; Peter, T.; Lohmann, U.

2010-02-01

This modelling study explores the availability of mineral dust particles as ice nuclei for interactions with ice, mixed-phase and liquid water clouds, also tracking the particles' history of cloud-processing. We performed 61 320 one-week forward trajectory calculations originating near the surface of major dust emitting regions in Africa and Asia using high-resolution meteorological analysis fields for the year 2007. Without explicitly modelling dust emission and deposition processes, dust-bearing trajectories were assumed to be those coinciding with known dust emission seasons. We found that dust emissions from Asian deserts lead to a higher potential for interactions with high clouds, despite being the climatologically much smaller dust emission source. This is due to Asian regions experiencing significantly more ascent than African regions, with strongest ascent in the Asian Taklimakan desert at ~25%, ~40% and 10% of trajectories ascending to 300 hPa in spring, summer and fall, respectively. The specific humidity at each trajectory's starting point was transported in a Lagrangian manner and relative humidities with respect to water and ice were calculated in 6-h steps downstream, allowing us to estimate the formation of liquid, mixed-phase and ice clouds. Practically none of the simulated air parcels reached regions where homogeneous ice nucleation can take place (T≲-40 °C) along trajectories that have not experienced water saturation first. By far the largest fraction of cloud forming trajectories entered conditions of mixed-phase clouds, where mineral dust will potentially exert the biggest influence. The majority of trajectories also passed through regions supersaturated with respect to ice but subsaturated with respect to water, where "warm" (T≳-40 °C) ice clouds may form prior to supercooled water or mixed-phase clouds. The importance of "warm" ice clouds and the general influence of dust in the mixed-phase cloud region are highly uncertain due to considerable scatter in recent laboratory data from ice nucleation experiments, which we briefly review in this work. For "classical" cirrus-forming temperatures, our results show that only mineral dust IN that underwent mixed-phase cloud-processing previously are likely to be relevant, and, therefore, we recommend further systematic studies of immersion mode ice nucleation on mineral dust suspended in atmospherically relevant coatings.

Ice stream behaviour in the western sector of the North Sea during the end of the last glacial cycle

NASA Astrophysics Data System (ADS)

Roberts, David; Evans, David; Clark, Chris; Bateman, Mark; Livingstone, Stephen; Medialdea, Alicia; Cofaigh, Colm O.; Grimoldi, Elena; Callard, Louise; Dove, Dayton; Stewart, Heather; Davies, Bethan; Chiverell, Richard

2016-04-01

During the last glacial cycle the East coast of the UK was overrun by the British-Irish Ice Sheet (BIIS) flowing eastwards and southwards. In recent years it has become evident that several ice streams including the Tweed, Tyne, and Stainmore Gap ice streams, as well as the late stage North Sea Lobe (NSL), all played a role in shaping the glacial landscape during this period, but understanding the flow phasing of these ice streams during advance and collapse has proved challenging. Here we present new data from the seafloor collected during recent work undertaken by the Britice Chrono and Glanam project teams during cruise JC123 in the North Sea. Sub-bottom seafloor data together with new swath data clearly show that the final phases of the collapse of the NSL were controlled by ice sourced from the Firth of Forth ice stream which deglaciated in a NNW trajectory. Other ice streams being fed from the west (e.g. Stainmore, Tyne, Tweed) were not influential in final phase ice retreat from the southern North Sea. The Forth ice imprint is characterised by several grounding zone/till wedges marking dynamic, oscillatory retreat of the ice as it retreated along an offshore corridor between North Yorkshire and Northumberland. Repeated packages of tills, ice marginal and glaciomarine sediments, which drape glacially scoured bedrock terrain and drumlins along this corridor, point to marine inundation accompanying ice retreat. New TCN ages suggest decoupling of the Tyne Gap ice stream and NSL between 17.8 and 16.5 ka and this coincides with rapid, regional collapse of the NSL between 17.2 and 16.0 ka along the Yorkshire and Durham coasts (new OSL ages; Britice Chrono). Hence, both the central and northern sectors of the BIIS were being strongly influenced by marine margin instability during the latter phases of the last glacial cycle.

Rheology of water ices V and VI

USGS Publications Warehouse

Durham, W.B.; Stern, L.A.; Kirby, S.H.

1996-01-01

We have measured the mechanical strength (??) of pure water ices V and VI under steady state deformation conditions. Constant displacement rate compressional tests were conducted in a gas apparatus at confining pressures from 400 250 K. Ices V and VI are thus Theologically distinct but by coincidence have approximately the same strength under the conditions chosen for these experiments. To avoid misidentification, these tests are therefore accompanied by careful observations of the occurrences and characteristics of phase changes. One sample each of ice V and VI was quenched at pressure to metastably retain the high-pressure phase and the acquired deformation microstructures; X ray diffraction analysis of these samples confirmed the phase identification. Surface replicas of the deformed and quenched samples suggest that ice V probably deforms largely by dislocation creep, while ice VI deforms by a more complicated process involving substantial grain size reduction through recrystallization.

A High Resolution Hydrometer Phase Classifier Based on Analysis of Cloud Radar Doppler Spectra.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luke,E.; Kollias, P.

2007-08-06

The lifecycle and radiative properties of clouds are highly sensitive to the phase of their hydrometeors (i.e., liquid or ice). Knowledge of cloud phase is essential for specifying the optical properties of clouds, or else, large errors can be introduced in the calculation of the cloud radiative fluxes. Current parameterizations of cloud water partition in liquid and ice based on temperature are characterized by large uncertainty (Curry et al., 1996; Hobbs and Rangno, 1998; Intriery et al., 2002). This is particularly important in high geographical latitudes and temperature ranges where both liquid droplets and ice crystal phases can exist (mixed-phasemore » cloud). The mixture of phases has a large effect on cloud radiative properties, and the parameterization of mixed-phase clouds has a large impact on climate simulations (e.g., Gregory and Morris, 1996). Furthermore, the presence of both ice and liquid affects the macroscopic properties of clouds, including their propensity to precipitate. Despite their importance, mixed-phase clouds are severely understudied compared to the arguably simpler single-phase clouds. In-situ measurements in mixed-phase clouds are hindered due to aircraft icing, difficulties distinguishing hydrometeor phase, and discrepancies in methods for deriving physical quantities (Wendisch et al. 1996, Lawson et al. 2001). Satellite-based retrievals of cloud phase in high latitudes are often hindered by the highly reflecting ice-covered ground and persistent temperature inversions. From the ground, the retrieval of mixed-phase cloud properties has been the subject of extensive research over the past 20 years using polarization lidars (e.g., Sassen et al. 1990), dual radar wavelengths (e.g., Gosset and Sauvageot 1992; Sekelsky and McIntosh, 1996), and recently radar Doppler spectra (Shupe et al. 2004). Millimeter-wavelength radars have substantially improved our ability to observe non-precipitating clouds (Kollias et al., 2007) due to their excellent sensitivity that enables the detection of thin cloud layers and their ability to penetrate several non-precipitating cloud layers. However, in mixed-phase clouds conditions, the observed Doppler moments are dominated by the highly reflecting ice crystals and thus can not be used to identify the cloud phase. This limits our ability to identify the spatial distribution of cloud phase and our ability to identify the conditions under which mixed-phase clouds form.« less

Dynamical mechanism of antifreeze proteins to prevent ice growth

NASA Astrophysics Data System (ADS)

Kutschan, B.; Morawetz, K.; Thoms, S.

2014-08-01

The fascinating ability of algae, insects, and fishes to survive at temperatures below normal freezing is realized by antifreeze proteins (AFPs). These are surface-active molecules and interact with the diffusive water-ice interface thus preventing complete solidification. We propose a dynamical mechanism on how these proteins inhibit the freezing of water. We apply a Ginzburg-Landau-type approach to describe the phase separation in the two-component system (ice, AFP). The free-energy density involves two fields: one for the ice phase with a low AFP concentration and one for liquid water with a high AFP concentration. The time evolution of the ice reveals microstructures resulting from phase separation in the presence of AFPs. We observed a faster clustering of pre-ice structure connected to a locking of grain size by the action of AFP, which is an essentially dynamical process. The adsorption of additional water molecules is inhibited and the further growth of ice grains stopped. The interfacial energy between ice and water is lowered allowing the AFPs to form smaller critical ice nuclei. Similar to a hysteresis in magnetic materials we observe a thermodynamic hysteresis leading to a nonlinear density dependence of the freezing point depression in agreement with the experiments.

Chk1 promotes replication fork progression by controlling replication initiation

PubMed Central

Petermann, Eva; Woodcock, Mick; Helleday, Thomas

2010-01-01

DNA replication starts at initiation sites termed replication origins. Metazoan cells contain many more potential origins than are activated (fired) during each S phase. Origin activation is controlled by the ATR checkpoint kinase and its downstream effector kinase Chk1, which suppresses origin firing in response to replication blocks and during normal S phase by inhibiting the cyclin-dependent kinase Cdk2. In addition to increased origin activation, cells deficient in Chk1 activity display reduced rates of replication fork progression. Here we investigate the causal relationship between increased origin firing and reduced replication fork progression. We use the Cdk inhibitor roscovitine or RNAi depletion of Cdc7 to inhibit origin firing in Chk1-inhibited or RNAi-depleted cells. We report that Cdk inhibition and depletion of Cdc7 can alleviate the slow replication fork speeds in Chk1-deficient cells. Our data suggest that increased replication initiation leads to slow replication fork progression and that Chk1 promotes replication fork progression during normal S phase by controlling replication origin activity. PMID:20805465

Superheating of monolayer ice in graphene nanocapillaries

NASA Astrophysics Data System (ADS)

Zhu, YinBo; Wang, FengChao; Wu, HengAn

2017-04-01

The freezing and melting of low-dimensional materials, either via a first-order phase transition or without any discontinuity in thermodynamic, still remain a matter of debate. Melting (superheating) in two-dimensional (2D) ice is fundamentally different from that in bulk counterpart. Here, we perform comprehensive molecular dynamics simulations of the superheating of monolayer ice in graphene nanocapillaries to understand the nature of melting transition in 2D water/ice. We find four different superheating (melting) scenarios can happen in the superheating of monolayer square-like ice, which are closely related to the lateral pressure and the channel width. The anomalous two-stage melting transition with arisen coexistence phase is found, which reveals the unknown extraordinary characteristics of melting in 2D water/ice. Under ultrahigh lateral pressure, the intermediate monolayer triangular amorphous ice will be formed during the superheating of monolayer square-like ice with both continuous-like and first-order phase transitions. Whereas, under low lateral pressure, the melting in monolayer square-like ice manifests typical discontinuity with notable hysteresis-loop in potential energy during the heating/cooling process. Moreover, we also find that highly puckered monolayer square-like ice can transform into bilayer AB-stacked amorphous ice with square pattern in the superheating process. The superheating behavior under high lateral pressure can be partly regarded as the compression limit of superheated monolayer water. The intrinsic phenomena in our simulated superheating of monolayer ice may be significant for understanding the melting behavior in 2D water/ice.

Superheating of monolayer ice in graphene nanocapillaries.

PubMed

Zhu, YinBo; Wang, FengChao; Wu, HengAn

2017-04-07

The freezing and melting of low-dimensional materials, either via a first-order phase transition or without any discontinuity in thermodynamic, still remain a matter of debate. Melting (superheating) in two-dimensional (2D) ice is fundamentally different from that in bulk counterpart. Here, we perform comprehensive molecular dynamics simulations of the superheating of monolayer ice in graphene nanocapillaries to understand the nature of melting transition in 2D water/ice. We find four different superheating (melting) scenarios can happen in the superheating of monolayer square-like ice, which are closely related to the lateral pressure and the channel width. The anomalous two-stage melting transition with arisen coexistence phase is found, which reveals the unknown extraordinary characteristics of melting in 2D water/ice. Under ultrahigh lateral pressure, the intermediate monolayer triangular amorphous ice will be formed during the superheating of monolayer square-like ice with both continuous-like and first-order phase transitions. Whereas, under low lateral pressure, the melting in monolayer square-like ice manifests typical discontinuity with notable hysteresis-loop in potential energy during the heating/cooling process. Moreover, we also find that highly puckered monolayer square-like ice can transform into bilayer AB-stacked amorphous ice with square pattern in the superheating process. The superheating behavior under high lateral pressure can be partly regarded as the compression limit of superheated monolayer water. The intrinsic phenomena in our simulated superheating of monolayer ice may be significant for understanding the melting behavior in 2D water/ice.

Thermodynamics of the formaldehyde-water and formaldehyde-ice systems for atmospheric applications.

PubMed

Barret, Manuel; Houdier, Stephan; Domine, Florent

2011-01-27

Formaldehyde (HCHO) is a species involved in numerous key atmospheric chemistry processes that can significantly impact the oxidative capacity of the atmosphere. Since gaseous HCHO is soluble in water, the water droplets of clouds and the ice crystals of snow exchange HCHO with the gas phase and the partitioning of HCHO between the air, water, and ice phases must be known to understand its chemistry. This study proposes thermodynamic formulations for the partitioning of HCHO between the gas phase and the ice and liquid water phases. A reanalysis of existing data on the vapor-liquid equilibrium has shown the inadequacy of the Henry's law formulation, and we instead propose the following equation to predict the mole fraction of HCHO in liquid water at equilibrium, X(HCHO,liq), as a function of the partial pressure P(HCHO) (Pa) and temperature T (K): X(HCHO,liq) = 1.700 × 10(-15) e((8014/T))(P(HCHO))(1.105). Given the paucity of data on the gas-ice equilibrium, the solubility of HCHO and the diffusion coefficient (D(HCHO)) in ice were measured by exposing large single ice crystals to low P(HCHO). Our recommended value for D(HCHO) over the temperature range 243-266 K is D(HCHO) = 6 × 10(-12) cm(2) s(-1). The solubility of HCHO in ice follows the relationship X(HCHO,ice) = 9.898 × 10(-13) e((4072/T))(P(HCHO))(0.803). Extrapolation of these data yields the P(HCHO) versus 1/T phase diagram for the H(2)O-HCHO system. The comparison of our results to existing data on the partitioning of HCHO between the snow and the atmosphere in the high arctic highlights the interplay between thermodynamic equilibrium and kinetics processes in natural systems.

NMR signal analysis to attribute the components to the solid/liquid phases present in mixes and ice creams.

PubMed

Mariette, François; Lucas, Tiphaine

2005-03-09

The NMR relaxation signals from complex products such as ice cream are hard to interpret because of the multiexponential behavior of the relaxation signal and the difficulty of attributing the NMR relaxation components to specific molecule fractions. An attribution of the NMR relaxation parameters is proposed, however, based on an approach that combines quantitative analysis of the spin-spin and spin-lattice relaxation times and the signal intensities with characterization of the ice cream components. We have been able to show that NMR can be used to describe the crystallized and liquid phases separately. The first component of the spin-spin and spin-lattice relaxation describes the behavior of the protons of the crystallized fat in the mix. The amount of fat crystals can then be estimated. In the case of ice cream, only the spin-lattice relaxation signal from the crystallized fraction is relevant. However, it enables the ice protons and the protons of the crystallized fat to be distinguished. The spin-lattice relaxation time can be used to describe the mobility of the protons in the different crystallized phases and also to quantify the amount of ice crystals and fat crystals in the ice cream. The NMR relaxation of the liquid phase of the mix has a biexponential behavior. A first component is attributable to the liquid fraction of the fat and to the sugars, while a second component is attributable to the aqueous phase. Overall, the study shows that despite the complexity of the NMR signal from ice cream, a number of relevant parameters can be extracted to study the influence of the formulation and of the process stages on the ice fraction, the crystallized fat fraction, and the liquid aqueous fraction.

On the potential influence of ice nuclei on surface-forced marine stratocumulus cloud dynamics

NASA Astrophysics Data System (ADS)

Harrington, Jerry Y.; Olsson, Peter Q.

2001-11-01

The mixed phase cloudy boundary layer that occurs during off-ice flow in the marine Arctic was simulated in an environment with a strong surface heat flux (nearly 800 W m-2). A two-dimensional, eddy-resolving model coupled to a detailed cloud microphysical model was used to study both liquid phase and mixed phase stratocumulus clouds and boundary layer (BL) dynamics in this environment. Since ice precipitation may be important to BL dynamics, and ice nuclei (IN) concentrations modulate ice precipitation rates, the role of IN in cloud and BL development was explored. The results of several simulations illustrate how mixed phase microphysical processes affect the evolution of the cloudy BL in this environment. In agreement with past studies, BLs with mixed phase clouds had weaker convection, shallower BL depths, and smaller cloud fractions than BLs with clouds restricted to the liquid phase only. It is shown that the weaker BL convection is due to strong ice precipitation. Ice precipitation reduces convective strength directly by stabilizing downdrafts and more indirectly by sensibly heating the BL and inhibiting vertical mixing of momentum thereby reducing surface heat fluxes by as much as 80 W m-2. This feedback between precipitation and surface fluxes was found to have a significant impact on cloud/BL morphology, producing oscillations in convective strength and cloud fraction that did not occur if surface fluxes were fixed at constant values. Increases in IN concentrations in mixed phase clouds caused a more rapid Bergeron-Findeisen process leading to larger precipitation fluxes, reduced convection and lower cloud fraction. When IN were removed from the BL through precipitation, fewer crystals were nucleated at later simulation times leading to progressively weaker precipitation rates, greater cloud fraction, and stronger convective BL eddies.

Representation of Arctic mixed-phase clouds and the Wegener-Bergeron-Findeisen process in climate models: Perspectives from a cloud-resolving study

NASA Astrophysics Data System (ADS)

Fan, Jiwen; Ghan, Steven; Ovchinnikov, Mikhail; Liu, Xiaohong; Rasch, Philip J.; Korolev, Alexei

2011-01-01

Two types of Arctic mixed-phase clouds observed during the ISDAC and M-PACE field campaigns are simulated using a 3-dimensional cloud-resolving model (CRM) with size-resolved cloud microphysics. The modeled cloud properties agree reasonably well with aircraft measurements and surface-based retrievals. Cloud properties such as the probability density function (PDF) of vertical velocity (w), cloud liquid and ice, regimes of cloud particle growth, including the Wegener-Bergeron-Findeisen (WBF) process, and the relationships among properties/processes in mixed-phase clouds are examined to gain insights for improving their representation in General Circulation Models (GCMs). The PDF of the simulated w is well represented by a Gaussian function, validating, at least for arctic clouds, the subgrid treatment used in GCMs. The PDFs of liquid and ice water contents can be approximated by Gamma functions, and a Gaussian function can describe the total water distribution, but a fixed variance assumption should be avoided in both cases. The CRM results support the assumption frequently used in GCMs that mixed phase clouds maintain water vapor near liquid saturation. Thus, ice continues to grow throughout the stratiform cloud but the WBF process occurs in about 50% of cloud volume where liquid and ice co-exist, predominantly in downdrafts. In updrafts, liquid and ice particles grow simultaneously. The relationship between the ice depositional growth rate and cloud ice strongly depends on the capacitance of ice particles. The simplified size-independent capacitance of ice particles used in GCMs could lead to large deviations in ice depositional growth.

Local Interactions of Hydrometeors by Diffusion in Mixed-Phase Clouds

NASA Astrophysics Data System (ADS)

Baumgartner, Manuel; Spichtinger, Peter

2017-04-01

Mixed-phase clouds, containing both ice particles and liquid droplets, are important for the Earth-Atmosphere system. They modulate the radiation budget by a combination of albedo effect and greenhouse effect. In contrast to liquid water clouds, the radiative impact of clouds containing ice particles is still uncertain. Scattering and absorption highly depends in microphysical properties of ice crystals, e.g. size and shape. In addition, most precipitation on Earth forms via the ice phase. Thus, better understanding of ice processes as well as their representation in models is required. A key process for determining shape and size of ice crystals is diffusional growth. Diffusion processes in mixed-phase clouds are highly uncertain; in addition they are usually highly simplified in cloud models, especially in bulk microphysics parameterizations. The direct interaction between cloud droplets and ice particles, due to spatial inhomogeneities, is ignored; the particles can only interact via their environmental conditions. Local effects as supply of supersaturation due to clusters of droplets around ice particles are usually not represented, although they form the physical basis of the Wegener-Bergeron-Findeisen process. We present direct numerical simulations of the interaction of single ice particles and droplets, especially their local competition for the available water vapor. In addition, we show an approach to parameterize local interactions by diffusion. The suggested parameterization uses local steady-state solutions of the diffusion equations for water vapor for an ice particle as well as a droplet. The individual solutions are coupled together to obtain the desired interaction. We show some results of the scheme as implemented in a parcel model.

Investigating the Relative Contributions of Secondary Ice Formation Processes to Ice Crystal Number Concentrations Within Mixed-Phase Clouds

NASA Astrophysics Data System (ADS)

Sullivan, S.; Nenes, A.

2015-12-01

Measurements of the in-cloud ice nuclei concentration can be three or four orders of magnitude less than those of the in-cloud ice crystal number concentration. Different secondary formation processes, active after initial ice nucleation, have been proposed to explain this discrepancy, but their relative importance, and even the exact physics of each mechanism, are still unclear. We construct a simple bin microphysics model (2IM) including depositional growth, the Hallett-Mossop process, ice-ice collisions, and ice-ice aggregation, with temperature- and supersaturation-dependent efficiencies for each process. 2IM extends the time-lag collision model of Yano and Phillips to additional bins and incorporates the aspect ratio evolution of Jensen and Harrington. Model output and measured ice crystal size distributions are compared to answer three questions: (1) how important is ice-ice aggregation relative to ice-ice collision around -15°C, where the Hallett-Mossop process is no longer active; (2) what process efficiencies lead to the best reproduction of observed ice crystal size distributions; and (3) does ice crystal aspect ratio affect the dominant secondary formation process. The resulting parameterization is intended for eventual use in larger-scale mixed-phase cloud schemes.

Structure of ice crystallized from supercooled water

PubMed Central

Malkin, Tamsin L.; Murray, Benjamin J.; Brukhno, Andrey V.; Anwar, Jamshed; Salzmann, Christoph G.

2012-01-01

The freezing of water to ice is fundamentally important to fields as diverse as cloud formation to cryopreservation. At ambient conditions, ice is considered to exist in two crystalline forms: stable hexagonal ice and metastable cubic ice. Using X-ray diffraction data and Monte Carlo simulations, we show that ice that crystallizes homogeneously from supercooled water is neither of these phases. The resulting ice is disordered in one dimension and therefore possesses neither cubic nor hexagonal symmetry and is instead composed of randomly stacked layers of cubic and hexagonal sequences. We refer to this ice as stacking-disordered ice I. Stacking disorder and stacking faults have been reported earlier for metastable ice I, but only for ice crystallizing in mesopores and in samples recrystallized from high-pressure ice phases rather than in water droplets. Review of the literature reveals that almost all ice that has been identified as cubic ice in previous diffraction studies and generated in a variety of ways was most likely stacking-disordered ice I with varying degrees of stacking disorder. These findings highlight the need to reevaluate the physical and thermodynamic properties of this metastable ice as a function of the nature and extent of stacking disorder using well-characterized samples. PMID:22232652

Structure of ice crystallized from supercooled water.

PubMed

Malkin, Tamsin L; Murray, Benjamin J; Brukhno, Andrey V; Anwar, Jamshed; Salzmann, Christoph G

2012-01-24

The freezing of water to ice is fundamentally important to fields as diverse as cloud formation to cryopreservation. At ambient conditions, ice is considered to exist in two crystalline forms: stable hexagonal ice and metastable cubic ice. Using X-ray diffraction data and Monte Carlo simulations, we show that ice that crystallizes homogeneously from supercooled water is neither of these phases. The resulting ice is disordered in one dimension and therefore possesses neither cubic nor hexagonal symmetry and is instead composed of randomly stacked layers of cubic and hexagonal sequences. We refer to this ice as stacking-disordered ice I. Stacking disorder and stacking faults have been reported earlier for metastable ice I, but only for ice crystallizing in mesopores and in samples recrystallized from high-pressure ice phases rather than in water droplets. Review of the literature reveals that almost all ice that has been identified as cubic ice in previous diffraction studies and generated in a variety of ways was most likely stacking-disordered ice I with varying degrees of stacking disorder. These findings highlight the need to reevaluate the physical and thermodynamic properties of this metastable ice as a function of the nature and extent of stacking disorder using well-characterized samples.

The potential influence of Asian and African mineral dust on ice, mixed-phase and liquid water clouds

NASA Astrophysics Data System (ADS)

Wiacek, A.; Peter, T.; Lohmann, U.

2010-09-01

This modelling study explores the availability of mineral dust particles as ice nuclei for interactions with ice, mixed-phase and liquid water clouds, also tracking the particles' history of cloud-processing. We performed 61 320 one-week forward trajectory calculations originating near the surface of major dust emitting regions in Africa and Asia using high-resolution meteorological analysis fields for the year 2007. Dust-bearing trajectories were assumed to be those coinciding with known dust emission seasons, without explicitly modelling dust emission and deposition processes. We found that dust emissions from Asian deserts lead to a higher potential for interactions with high ice clouds, despite being the climatologically much smaller dust emission source. This is due to Asian regions experiencing significantly more ascent than African regions, with strongest ascent in the Asian Taklimakan desert at ~25%, ~40% and 10% of trajectories ascending to 300 hPa in spring, summer and fall, respectively. The specific humidity at each trajectory's starting point was transported in a Lagrangian manner and relative humidities with respect to water and ice were calculated in 6-h steps downstream, allowing us to estimate the formation of liquid, mixed-phase and ice clouds. Downstream of the investigated dust sources, practically none of the simulated air parcels reached conditions of homogeneous ice nucleation (T≲-40 °C) along trajectories that have not experienced water saturation first. By far the largest fraction of cloud forming trajectories entered conditions of mixed-phase clouds, where mineral dust will potentially exert the biggest influence. The majority of trajectories also passed through atmospheric regions supersaturated with respect to ice but subsaturated with respect to water, where so-called "warm ice clouds" (T≳-40 °C) theoretically may form prior to supercooled water or mixed-phase clouds. The importance of "warm ice clouds" and the general influence of dust in the mixed-phase cloud region are highly uncertain due to both a considerable scatter in recent laboratory data from ice nucleation experiments, which we briefly review in this work, and due to uncertainties in sub-grid scale vertical transport processes unresolved by the present trajectory analysis. For "classical" cirrus-forming temperatures (T≲-40 °C), our results show that only mineral dust ice nuclei that underwent mixed-phase cloud-processing, most likely acquiring coatings of organic or inorganic material, are likely to be relevant. While the potential paucity of deposition ice nuclei shown in this work dimishes the possibility of deposition nucleation, the absence of liquid water droplets at T≲-40 °C makes the less explored contact freezing mechanism (involving droplet collisions with bare ice nuclei) highly inefficient. These factors together indicate the necessity of further systematic studies of immersion mode ice nucleation on mineral dust suspended in atmospherically relevant coatings.

The preparation and structure of salty ice VII under pressure

NASA Astrophysics Data System (ADS)

Klotz, Stefan; Bove, Livia E.; Strässle, Thierry; Hansen, Thomas C.; Saitta, Antonino M.

2009-05-01

It is widely accepted that ice, no matter what phase, is unable to incorporate large amounts of salt into its structure. This conclusion is based on the observation that on freezing of salt water, ice expels the salt almost entirely as brine. Here, we show that this behaviour is not an intrinsic physico-chemical property of ice phases. We demonstrate by neutron diffraction that substantial amounts of dissolved LiCl can be built homogeneously into the ice VII structure if it is produced by recrystallization of its glassy (amorphous) state under pressure. Such `alloyed' ice VII has significantly different structural properties compared with pure ice VII, such as an 8% larger unit cell volume, 5 times larger displacement factors, an absence of a transition to an ordered ice VIII structure and plasticity. Our study suggests that there could be a whole new class of `salty' high-pressure ice forms.

The preparation and structure of salty ice VII under pressure.

PubMed

Klotz, Stefan; Bove, Livia E; Strässle, Thierry; Hansen, Thomas C; Saitta, Antonino M

2009-05-01

It is widely accepted that ice, no matter what phase, is unable to incorporate large amounts of salt into its structure. This conclusion is based on the observation that on freezing of salt water, ice expels the salt almost entirely as brine. Here, we show that this behaviour is not an intrinsic physico-chemical property of ice phases. We demonstrate by neutron diffraction that substantial amounts of dissolved LiCl can be built homogeneously into the ice VII structure if it is produced by recrystallization of its glassy (amorphous) state under pressure. Such 'alloyed' ice VII has significantly different structural properties compared with pure ice VII, such as an 8% larger unit cell volume, 5 times larger displacement factors, an absence of a transition to an ordered ice VIII structure and plasticity. Our study suggests that there could be a whole new class of 'salty' high-pressure ice forms.

Benchmarking the x-ray phase contrast imaging for ICF DT ice characterization using roughened surrogates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dewald, E; Kozioziemski, B; Moody, J

2008-06-26

We use x-ray phase contrast imaging to characterize the inner surface roughness of DT ice layers in capsules planned for future ignition experiments. It is therefore important to quantify how well the x-ray data correlates with the actual ice roughness. We benchmarked the accuracy of our system using surrogates with fabricated roughness characterized with high precision standard techniques. Cylindrical artifacts with azimuthally uniform sinusoidal perturbations with 100 um period and 1 um amplitude demonstrated 0.02 um accuracy limited by the resolution of the imager and the source size of our phase contrast system. Spherical surrogates with random roughness close tomore » that required for the DT ice for a successful ignition experiment were used to correlate the actual surface roughness to that obtained from the x-ray measurements. When comparing average power spectra of individual measurements, the accuracy mode number limits of the x-ray phase contrast system benchmarked against surface characterization performed by Atomic Force Microscopy are 60 and 90 for surrogates smoother and rougher than the required roughness for the ice. These agreement mode number limits are >100 when comparing matching individual measurements. We will discuss the implications for interpreting DT ice roughness data derived from phase-contrast x-ray imaging.« less

Interplay of defect doping and Bernal-Fowler rules: A simulation study of the dynamics on ice lattices

NASA Astrophysics Data System (ADS)

Köster, K. W.; Klocke, T.; Wieland, F.; Böhmer, R.

2017-10-01

Protonic defects on ice lattices induced by doping with acids such as HCl and HF or bases such as KOH can facilitate order-disorder transitions. In laboratory experiments KOH doping is efficient in promoting the ordering transition from hexagonal ice I to ice XI, but it is ineffective for other known ice phases, for which HCl can trigger hydrogen ordering. Aiming at understanding these differences, random-walk simulations of the defect diffusion are performed on two- and three-dimensional ice lattices under the constraints imposed by the Bernal-Fowler ice rules. Effective defect diffusion coefficients are calculated for a range of dopants, concentrations, and ice phases. The interaction of different defects, incorporated by different dopants, is investigated to clarify the particular motion-enhancing role played by complementary defect pairs.

Arctic Sea Ice Export Through Fram Strait and Atmospheric Planetary Waves

NASA Technical Reports Server (NTRS)

Cavalieri, Donald J.; Koblinsky, Chester (Technical Monitor)

2001-01-01

A link is found between the variability of Arctic sea ice export through Ram Strait and the phase of the longest atmospheric planetary wave (zonal wave 1) in SLP for the period 1958-1997. Previous studies have identified a link between From Strait ice export and the North Atlantic Oscillation (NAO), but this link has been described as unstable because of a lack of consistency over time scales longer than the last two decades. Inconsistent and low correlations are also found between From Strait ice export and the Arctic Oscillation (AD) index. This paper shows that the phase of zonal wave 1 explains 60% - 70% of the simulated From Strait ice export variance over the Goodyear period 1958 - 1997. Unlike the NAB and AD links, these high variances are consistent for both the first and second halves of the Goodyear period. This consistency is attributed to the sensitivity of the wave I phase at high latitudes to the presence of secondary low pressure systems in the Barents Sea that serve to drive sea ice southward through From Strait. These results provide further evidence that the phase of zonal wave 1 in SLP at high latitudes drives regional as well as hemispheric low frequency Arctic Ocean and sea ice variability.

Hydrogen-bond symmetrization in methane and hydrogen hydrates in the Mbar range

NASA Astrophysics Data System (ADS)

Bove, L. E.; Ranieri, U.; Gaal, R.; Finocchi, F.; Kuhs, W. F.; Falenty, A.; Klotz, S.; Gillet, P.

2016-12-01

Ice-VII and ice-X phases are the most stable forms of ice at high temperature and extreme pressures, typical of the interiors of satellites and planets. The phase transition between them is a prototypical case of quantum-driven phenomenon, as it can be described as a quantum delocalization of protons in the middle of O-O distances. Recent studies on LiCl- and NaCl-doped ice 1-3 have shown that the presence of salt inclusions in the ice lattice suppresses the quantum behavior of protons, hindering the appearance of the symmetric phase, and possibly suppressing the predicted high temperature superionic phase. This finding stimulated the investigation of similar effects in other water-based compounds, which are thought to be present in icy bodies, namely hydrogen and methane high pressure hydrates. Few experiments have been performed in the past to identify signatures of the hydrogen-bond symmetrization in methane and hydrogen hydrates without reaching conclusive results4,5. Here we present new results on the hydrogen-bond symmetrization of methane and hydrogen hydrates using Raman scattering in the Mbar range and semiclassical simulations including nuclear quantum effects. 1 Bove L. E. et al., E_ect of salt on the H-bond symmetrization in ice, Proc. Natl. Acad. Sci. USA 112, 8216, 2015 ; 2. Bronstein Y. et al., Quantum versus classical protons in pure and salty ice under pressure, Phys. Rev. B 93, 024104, 2016. 3. Klotz S. et al., Ice VII from aqueous salt solutions: From a glass to a crystal with broken H-bonds, Nature Sci. Rep. , in press. 4. Tanaka T. et al., Phase changes of _lled ice Ih methane hydrate under low temperature and high pressure, J. Chem. Phys. 139, 104701, 2013 5. Hirai H. et al., Structural changes of _lled ice Ic hydrogen hydrate under low temperatures and high pressures from 5 to 50 GPa, J. Chem. Phys. 137, 074505, 2012

Dynamic interaction of Y RNAs with chromatin and initiation proteins during human DNA replication

PubMed Central

Zhang, Alice Tianbu; Langley, Alexander R.; Christov, Christo P.; Kheir, Eyemen; Shafee, Thomas; Gardiner, Timothy J.; Krude, Torsten

2011-01-01

Non-coding Y RNAs are required for the initiation of chromosomal DNA replication in mammalian cells. It is unknown how they perform this function or if they associate with a nuclear structure during DNA replication. Here, we investigate the association of Y RNAs with chromatin and their interaction with replication proteins during DNA replication in a human cell-free system. Our results show that fluorescently labelled Y RNAs associate with unreplicated euchromatin in late G1 phase cell nuclei before the initiation of DNA replication. Following initiation, Y RNAs are displaced locally from nascent and replicated DNA present in replication foci. In intact human cells, a substantial fraction of endogenous Y RNAs are associated with G1 phase nuclei, but not with G2 phase nuclei. Y RNAs interact and colocalise with the origin recognition complex (ORC), the pre-replication complex (pre-RC) protein Cdt1, and other proteins implicated in the initiation of DNA replication. These data support a molecular ‘catch and release’ mechanism for Y RNA function during the initiation of chromosomal DNA replication, which is consistent with Y RNAs acting as replication licensing factors. PMID:21610089

Microphysical Consequences of the Spatial Distribution of Ice Nucleation in Mixed-Phase Stratiform Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Fan; Ovchinnikov, Mikhail; Shaw, Raymond A.

Mixed-phase stratiform clouds can persist even with steady ice precipitation fluxes, and the origin and microphysical properties of the ice crystals are of interest. Vapor deposition growth and sedimentation of ice particles along with a uniform volume source of ice nucleation, leads to a power law relation between ice water content wi and ice number concentration ni with exponent 2.5. The result is independent of assumptions about the vertical velocity structure of the cloud and is therefore more general than the related expression of Yang et al. [2013]. The sensitivity of the wi-ni relationship to the spatial distribution of icemore » nucleation is confirmed by Lagrangian tracking and ice growth with cloud-volume, cloud-top, and cloud-base sources of ice particles through a time-dependent cloud field. Based on observed wi and ni from ISDAC, a lower bound of 0.006 m^3/s is obtained for the ice crystal formation rate.« less

Influence of strong and weak hydrogen bonds in ices on stimulated Raman scattering.

PubMed

Li, Tianyu; Li, Fangfang; Li, Zhanlong; Sun, Chenglin; Tong, Junhong; Fang, Wenhui; Men, Zhiwei

2016-03-15

Stimulated Raman scattering (SRS) in liquid water and ice Ih using Nd:YAG laser is investigated. The spectrum of backward SRS (BSRS) in water is acquired. The spectrum shows an unexpected SRS peak at around 3453  cm(-1) besides the normal peak, which is similar to the spontaneous Raman spectrum of ice VII. The ice VII phase will be formed by laser-induced shock compression in liquid water. Simultaneously, unlike the spontaneous Raman spectrum, the pre-resonance SRS of ice Ih at around 3110 and 3210  cm(-1) is observed. The Raman peaks appeared in liquid water and ice Ih are attributed to the effect of strong and weak hydrogen bonds (H bonds), which should be ubiquitous in other ice phases.

Phase boundaries, nucleation rates and speed of crystal growth of the water-to-ice transition under an electric field: a simulation study

NASA Astrophysics Data System (ADS)

Zaragoza, Alberto; Espinosa, Jorge R.; Ramos, Regina; Cobos, José Antonio; Aragones, Juan Luis; Vega, Carlos; Sanz, Eduardo; Ramírez, Jorge; Valeriani, Chantal

2018-05-01

We investigate with computer simulations the effect of applying an electric field on the water-to-ice transition. We use a combination of state-of-the-art simulation techniques to obtain phase boundaries and crystal growth rates (direct coexistence), nucleation rates (seeding) and interfacial free energies (seeding and mold integration). First, we consider ice Ih, the most stable polymorph in the absence of a field. Its normal melting temperature, speed of crystal growth and nucleation rate (for a given supercooling) diminish as the intensity of the field goes up. Then, we study polarised cubic ice, or ice Icf, the most stable solid phase under a strong electric field. Its normal melting point goes up with the field and, for a given supercooling, under the studied field (0.3 V nm‑1) ice Icf nucleates and grows at a similar rate as Ih with no field. The net effect of the field would then be that ice nucleates at warmer temperatures, but in the form of ice Icf. The main conclusion of this work is that reasonable electric fields (not strong enough to break water molecules apart) are not relevant in the context of homogeneous ice nucleation at 1 bar.

Phase boundaries, nucleation rates and speed of crystal growth of the water-to-ice transition under an electric field: a simulation study.

PubMed

Zaragoza, Alberto; Espinosa, Jorge R; Ramos, Regina; Antonio Cobos, José; Luis Aragones, Juan; Vega, Carlos; Sanz, Eduardo; Ramírez, Jorge; Valeriani, Chantal

2018-05-02

We investigate with computer simulations the effect of applying an electric field on the water-to-ice transition. We use a combination of state-of-the-art simulation techniques to obtain phase boundaries and crystal growth rates (direct coexistence), nucleation rates (seeding) and interfacial free energies (seeding and mold integration). First, we consider ice Ih, the most stable polymorph in the absence of a field. Its normal melting temperature, speed of crystal growth and nucleation rate (for a given supercooling) diminish as the intensity of the field goes up. Then, we study polarised cubic ice, or ice Icf, the most stable solid phase under a strong electric field. Its normal melting point goes up with the field and, for a given supercooling, under the studied field (0.3 V nm -1 ) ice Icf nucleates and grows at a similar rate as Ih with no field. The net effect of the field would then be that ice nucleates at warmer temperatures, but in the form of ice Icf. The main conclusion of this work is that reasonable electric fields (not strong enough to break water molecules apart) are not relevant in the context of homogeneous ice nucleation at 1 bar.

Quantification of unsteady heat transfer and phase changing process inside small icing water droplets.

PubMed

Jin, Zheyan; Hu, Hui

2009-05-01

We report progress made in our recent effort to develop and implement a novel, lifetime-based molecular tagging thermometry (MTT) technique to quantify unsteady heat transfer and phase changing process inside small icing water droplets pertinent to wind turbine icing phenomena. The lifetime-based MTT technique was used to achieve temporally and spatially resolved temperature distribution measurements within small, convectively cooled water droplets to quantify unsteady heat transfer within the small water droplets in the course of convective cooling process. The transient behavior of phase changing process within small icing water droplets was also revealed clearly by using the MTT technique. Such measurements are highly desirable to elucidate underlying physics to improve our understanding about important microphysical phenomena pertinent to ice formation and accreting process as water droplets impinging onto wind turbine blades.

Ice particle production in mid-level stratiform mixed-phase clouds observed with collocated A-Train measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Damao; Wang, Zhien; Kollias, Pavlos

In this study, collocated A-Train CloudSat radar and CALIPSO lidar measurements between 2006 and 2010 are analyzed to study primary ice particle production characteristics in mid-level stratiform mixed-phase clouds on a global scale. For similar clouds in terms of cloud top temperature and liquid water path, Northern Hemisphere latitude bands have layer-maximum radar reflectivity (ZL) that is ~1 to 8 dBZ larger than their counterparts in the Southern Hemisphere. The systematically larger ZL under similar cloud conditions suggests larger ice number concentrations in mid-level stratiform mixed-phase clouds over the Northern Hemisphere, which is possibly related to higher background aerosol loadings.more » Furthermore, we show that springtime northern mid- and high latitudes have ZL that is larger by up to 6 dBZ (a factor of 4 higher ice number concentration) than other seasons, which might be related to more dust events that provide effective ice nucleating particles. Our study suggests that aerosol-dependent ice number concentration parameterizations are required in climate models to improve mixed-phase cloud simulations, especially over the Northern Hemisphere.« less

Ice particle production in mid-level stratiform mixed-phase clouds observed with collocated A-Train measurements

DOE PAGES

Zhang, Damao; Wang, Zhien; Kollias, Pavlos; ...

2018-03-28

In this study, collocated A-Train CloudSat radar and CALIPSO lidar measurements between 2006 and 2010 are analyzed to study primary ice particle production characteristics in mid-level stratiform mixed-phase clouds on a global scale. For similar clouds in terms of cloud top temperature and liquid water path, Northern Hemisphere latitude bands have layer-maximum radar reflectivity (ZL) that is ~1 to 8 dBZ larger than their counterparts in the Southern Hemisphere. The systematically larger ZL under similar cloud conditions suggests larger ice number concentrations in mid-level stratiform mixed-phase clouds over the Northern Hemisphere, which is possibly related to higher background aerosol loadings.more » Furthermore, we show that springtime northern mid- and high latitudes have ZL that is larger by up to 6 dBZ (a factor of 4 higher ice number concentration) than other seasons, which might be related to more dust events that provide effective ice nucleating particles. Our study suggests that aerosol-dependent ice number concentration parameterizations are required in climate models to improve mixed-phase cloud simulations, especially over the Northern Hemisphere.« less

Square ice in graphene nanocapillaries.

PubMed

Algara-Siller, G; Lehtinen, O; Wang, F C; Nair, R R; Kaiser, U; Wu, H A; Geim, A K; Grigorieva, I V

2015-03-26

Bulk water exists in many forms, including liquid, vapour and numerous crystalline and amorphous phases of ice, with hexagonal ice being responsible for the fascinating variety of snowflakes. Much less noticeable but equally ubiquitous is water adsorbed at interfaces and confined in microscopic pores. Such low-dimensional water determines aspects of various phenomena in materials science, geology, biology, tribology and nanotechnology. Theory suggests many possible phases for adsorbed and confined water, but it has proved challenging to assess its crystal structure experimentally. Here we report high-resolution electron microscopy imaging of water locked between two graphene sheets, an archetypal example of hydrophobic confinement. The observations show that the nanoconfined water at room temperature forms 'square ice'--a phase having symmetry qualitatively different from the conventional tetrahedral geometry of hydrogen bonding between water molecules. Square ice has a high packing density with a lattice constant of 2.83 Å and can assemble in bilayer and trilayer crystallites. Molecular dynamics simulations indicate that square ice should be present inside hydrophobic nanochannels independently of their exact atomic nature.

Transition mechanism of sH to filled-ice Ih structure of methane hydrate under fixed pressure condition

NASA Astrophysics Data System (ADS)

Kadobayashi, H.; Hirai, H.; Ohfuji, H.; Kojima, Y.; Ohishi, Y.; Hirao, N.; Ohtake, M.; Yamamoto, Y.

2017-10-01

The phase transition mechanism of methane hydrate from sH to filled-ice Ih structure was examined using a combination of time-resolved X-ray diffractometry (XRD) and Raman spectroscopy in conjunction with charge-coupled device (CCD) camera observation under fixed pressure conditions. Prior to time-resolved Raman experiments, the typical C-H vibration modes and their pressure dependence of three methane hydrate structures, fluid methane and solid methane were measured using Raman spectroscopy to distinguish the phase transitions of methane hydrates from decomposition to solid methane and ice VI or VII. Experimental results by XRD, Raman spectroscopy and CCD camera observation revealed that the structural transition of sH to filled-ice Ih occurs through a collapse of the sH framework followed by the release of fluid methane that is then gradually incorporated into the filled-ice Ih to reconstruct its structure. These observations suggest that the phase transition of sH to filled-ice Ih takes place by a typical reconstructive mechanism.

Low-latitude variability of ice cloud properties and cloud thermodynamic phase observed by the Atmospheric Infrared Sounder (AIRS)

NASA Astrophysics Data System (ADS)

Kahn, B. H.; Yue, Q.; Davis, S. M.; Fetzer, E. J.; Schreier, M. M.; Tian, B.; Wong, S.

2016-12-01

We will quantify the time and space dependence of ice cloud effective radius (CER), optical thickness (COT), cloud top temperature (CTT), effective cloud fraction (ECF), and cloud thermodynamic phase (ice, liquid, or unknown) with the Version 6 Atmospheric Infrared Sounder (AIRS) satellite observational data set from September 2002 until present. We show that cloud frequency, CTT, COT, and ECF have substantially different responses to ENSO variations. Large-scale changes in ice CER are also observed with a several micron tropics-wide increase during the 2015-2016 El Niño and similar decreases during the La Niña phase. We show that the ice CER variations reflect fundamental changes in the spatial distributions and relative frequencies of different ice cloud types. Lastly, the high spatial and temporal resolution variability of the cloud fields are explored and we show that these data capture a multitude of convectively coupled tropical waves such as Kelvin, westward and eastward intertio-gravity, equatorial Rossby, and mixed Rossby-gravity waves.

Square ice in graphene nanocapillaries

NASA Astrophysics Data System (ADS)

Algara-Siller, G.; Lehtinen, O.; Wang, F. C.; Nair, R. R.; Kaiser, U.; Wu, H. A.; Geim, A. K.; Grigorieva, I. V.

2015-03-01

Bulk water exists in many forms, including liquid, vapour and numerous crystalline and amorphous phases of ice, with hexagonal ice being responsible for the fascinating variety of snowflakes. Much less noticeable but equally ubiquitous is water adsorbed at interfaces and confined in microscopic pores. Such low-dimensional water determines aspects of various phenomena in materials science, geology, biology, tribology and nanotechnology. Theory suggests many possible phases for adsorbed and confined water, but it has proved challenging to assess its crystal structure experimentally. Here we report high-resolution electron microscopy imaging of water locked between two graphene sheets, an archetypal example of hydrophobic confinement. The observations show that the nanoconfined water at room temperature forms `square ice'--a phase having symmetry qualitatively different from the conventional tetrahedral geometry of hydrogen bonding between water molecules. Square ice has a high packing density with a lattice constant of 2.83 Å and can assemble in bilayer and trilayer crystallites. Molecular dynamics simulations indicate that square ice should be present inside hydrophobic nanochannels independently of their exact atomic nature.

Experimental design for three interrelated marine ice sheet and ocean model intercomparison projects: MISMIP v. 3 (MISMIP +), ISOMIP v. 2 (ISOMIP +) and MISOMIP v. 1 (MISOMIP1)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Asay-Davis, Xylar S.; Cornford, Stephen L.; Durand, Gaël

Coupled ice sheet-ocean models capable of simulating moving grounding lines are just becoming available. Such models have a broad range of potential applications in studying the dynamics of marine ice sheets and tidewater glaciers, from process studies to future projections of ice mass loss and sea level rise. The Marine Ice Sheet-Ocean Model Intercomparison Project (MISOMIP) is a community effort aimed at designing and coordinating a series of model intercomparison projects (MIPs) for model evaluation in idealized setups, model verification based on observations, and future projections for key regions of the West Antarctic Ice Sheet (WAIS). Here we describe computationalmore » experiments constituting three interrelated MIPs for marine ice sheet models and regional ocean circulation models incorporating ice shelf cavities. These consist of ice sheet experiments under the Marine Ice Sheet MIP third phase (MISMIP+), ocean experiments under the Ice Shelf-Ocean MIP second phase (ISOMIP+) and coupled ice sheet-ocean experiments under the MISOMIP first phase (MISOMIP1). All three MIPs use a shared domain with idealized bedrock topography and forcing, allowing the coupled simulations (MISOMIP1) to be compared directly to the individual component simulations (MISMIP+ and ISOMIP+). The experiments, which have qualitative similarities to Pine Island Glacier Ice Shelf and the adjacent region of the Amundsen Sea, are designed to explore the effects of changes in ocean conditions, specifically the temperature at depth, on basal melting and ice dynamics. In future work, differences between model results will form the basis for the evaluation of the participating models.« less

On the accuracy of van der Waals inclusive density-functional theory exchange-correlation functionals for ice at ambient and high pressures.

PubMed

Santra, Biswajit; Klimes, Jirí; Tkatchenko, Alexandre; Alfè, Dario; Slater, Ben; Michaelides, Angelos; Car, Roberto; Scheffler, Matthias

2013-10-21

Density-functional theory (DFT) has been widely used to study water and ice for at least 20 years. However, the reliability of different DFT exchange-correlation (xc) functionals for water remains a matter of considerable debate. This is particularly true in light of the recent development of DFT based methods that account for van der Waals (vdW) dispersion forces. Here, we report a detailed study with several xc functionals (semi-local, hybrid, and vdW inclusive approaches) on ice Ih and six proton ordered phases of ice. Consistent with our previous study [B. Santra, J. Klimeš, D. Alfè, A. Tkatchenko, B. Slater, A. Michaelides, R. Car, and M. Scheffler, Phys. Rev. Lett. 107, 185701 (2011)] which showed that vdW forces become increasingly important at high pressures, we find here that all vdW inclusive methods considered improve the relative energies and transition pressures of the high-pressure ice phases compared to those obtained with semi-local or hybrid xc functionals. However, we also find that significant discrepancies between experiment and the vdW inclusive approaches remain in the cohesive properties of the various phases, causing certain phases to be absent from the phase diagram. Therefore, room for improvement in the description of water at ambient and high pressures remains and we suggest that because of the stern test the high pressure ice phases pose they should be used in future benchmark studies of simulation methods for water.

ICE SLURRY APPLICATIONS

PubMed Central

Kauffeld, M.; WANG, M. J.; Goldstein, V.; Kasza, K. E.

2011-01-01

The role of secondary refrigerants is expected to grow as the focus on the reduction of greenhouse gas emissions increases. The effectiveness of secondary refrigerants can be improved when phase changing media are introduced in place of single phase media. Operating at temperatures below the freezing point of water, ice slurry facilitates several efficiency improvements such as reductions in pumping energy consumption as well as lowering the required temperature difference in heat exchangers due to the beneficial thermo-physical properties of ice slurry. Research has shown that ice slurry can be engineered to have ideal ice particle characteristics so that it can be easily stored in tanks without agglomeration and then be extractable for pumping at very high ice fraction without plugging. In addition ice slurry can be used in many direct contact food and medical protective cooling applications. This paper provides an overview of the latest developments in ice slurry technology. PMID:21528014

Dynamic signatures of the transition from stacking disordered to hexagonal ice: Dielectric and nuclear magnetic resonance studies

NASA Astrophysics Data System (ADS)

Gainaru, C.; Vynokur, E.; Köster, K. W.; Fuentes-Landete, V.; Spettel, N.; Zollner, J.; Loerting, T.; Böhmer, R.

2018-04-01

Using various temperature-cycling protocols, the dynamics of ice I were studied via dielectric spectroscopy and nuclear magnetic resonance relaxometry on protonated and deuterated samples obtained by heating high-density amorphous ices as well as crystalline ice XII. Previous structural studies of ice I established that at temperatures of about 230 K, the stacking disorder of the cubic/hexagonal oxygen lattice vanishes. The present dielectric and nuclear magnetic resonance investigations of spectral changes disclose that the memory of the existence of a precursor phase is preserved in the hydrogen matrix up to 270 K. This finding of hydrogen mobility lower than that of the undoped hexagonal ice near the melting point highlights the importance of dynamical investigations of the transitions between various ice phases and sheds new light on the dynamics in ice I in general.

Intragenic origins due to short G1 phases underlie oncogene-induced DNA replication stress.

PubMed

Macheret, Morgane; Halazonetis, Thanos D

2018-03-01

Oncogene-induced DNA replication stress contributes critically to the genomic instability that is present in cancer. However, elucidating how oncogenes deregulate DNA replication has been impeded by difficulty in mapping replication initiation sites on the human genome. Here, using a sensitive assay to monitor nascent DNA synthesis in early S phase, we identified thousands of replication initiation sites in cells before and after induction of the oncogenes CCNE1 and MYC. Remarkably, both oncogenes induced firing of a novel set of DNA replication origins that mapped within highly transcribed genes. These ectopic origins were normally suppressed by transcription during G1, but precocious entry into S phase, before all genic regions had been transcribed, allowed firing of origins within genes in cells with activated oncogenes. Forks from oncogene-induced origins were prone to collapse, as a result of conflicts between replication and transcription, and were associated with DNA double-stranded break formation and chromosomal rearrangement breakpoints both in our experimental system and in a large cohort of human cancers. Thus, firing of intragenic origins caused by premature S phase entry represents a mechanism of oncogene-induced DNA replication stress that is relevant for genomic instability in human cancer.

DNA replication after mutagenic treatment in Hordeum vulgare.

PubMed

Kwasniewska, Jolanta; Kus, Arita; Swoboda, Monika; Braszewska-Zalewska, Agnieszka

2016-12-01

The temporal and spatial properties of DNA replication in plants related to DNA damage and mutagenesis is poorly understood. Experiments were carried out to explore the relationships between DNA replication, chromatin structure and DNA damage in nuclei from barley root tips. We quantitavely analysed the topological organisation of replication foci using pulse EdU labelling during the S phase and its relationship with the DNA damage induced by mutagenic treatment with maleic hydrazide (MH), nitroso-N-methyl-urea (MNU) and gamma ray. Treatment with mutagens did not change the characteristic S-phase patterns in the nuclei; however, the frequencies of the S-phase-labelled cells after treatment differed from those observed in the control cells. The analyses of DNA replication in barley nuclei were extended to the micronuclei induced by mutagens. Replication in the chromatin of the micronuclei was rare. The results of simultanous TUNEL reaction to identify cells with DNA strand breaks and the labelling of the S-phase cells with EdU revealed the possibility of DNA replication occurring in damaged nuclei. For the first time, the intensity of EdU fluorescence to study the rate of DNA replication was analysed. Copyright © 2016 Elsevier B.V. All rights reserved.

Mixed-phase cloud physics and Southern Ocean cloud feedback in climate models

DOE PAGES

McCoy, Daniel T.; Hartmann, Dennis L.; Zelinka, Mark D.; ...

2015-08-21

Increasing optical depth poleward of 45° is a robust response to warming in global climate models. Much of this cloud optical depth increase has been hypothesized to be due to transitions from ice-dominated to liquid-dominated mixed-phase cloud. In this study, the importance of liquid-ice partitioning for the optical depth feedback is quantified for 19 Coupled Model Intercomparison Project Phase 5 models. All models show a monotonic partitioning of ice and liquid as a function of temperature, but the temperature at which ice and liquid are equally mixed (the glaciation temperature) varies by as much as 40 K across models. Modelsmore » that have a higher glaciation temperature are found to have a smaller climatological liquid water path (LWP) and condensed water path and experience a larger increase in LWP as the climate warms. The ice-liquid partitioning curve of each model may be used to calculate the response of LWP to warming. It is found that the repartitioning between ice and liquid in a warming climate contributes at least 20% to 80% of the increase in LWP as the climate warms, depending on model. Intermodel differences in the climatological partitioning between ice and liquid are estimated to contribute at least 20% to the intermodel spread in the high-latitude LWP response in the mixed-phase region poleward of 45°S. As a result, it is hypothesized that a more thorough evaluation and constraint of global climate model mixed-phase cloud parameterizations and validation of the total condensate and ice-liquid apportionment against observations will yield a substantial reduction in model uncertainty in the high-latitude cloud response to warming.« less

The competition between mineral dust and soot ice nuclei in mixed-phase clouds (Invited)

NASA Astrophysics Data System (ADS)

Murray, B. J.; Atkinson, J.; Umo, N.; Browse, J.; Woodhouse, M. T.; Whale, T.; Baustian, K. J.; Carslaw, K. S.; Dobbie, S.; O'Sullivan, D.; Malkin, T. L.

2013-12-01

The amount of ice present in mixed-phase clouds, which contain both supercooled liquid water droplets and ice particles, affects cloud extent, lifetime, particle size and radiative properties. The freezing of cloud droplets can be catalysed by the presence of aerosol particles known as ice nuclei. In this talk our recent laboratory and global aerosol modelling work on mineral dust and soot ice nuclei will be presented. We have performed immersion mode experiments to quantify ice nucleation by the individual minerals which make up desert mineral dusts and have shown that the feldspar component, rather than the clay component, is most important for ice nucleation (Atkinson et al. 2013). Experiments with well-characterised soot generated with eugenol, an intermediate in biomass burning, and n-decane show soot has a significant ice nucleation activity in mixed-phase cloud conditions. Our results for soot are in good agreement with previous results for acetylene soot (DeMott, 1990), but extend the efficiency to much higher temperatures. We then use a global aerosol model (GLOMAP) to map the distribution of soot and feldspar particles on a global basis. We show that below about -15oC that dust and soot together can explain most observed ice nuclei in the Earth's atmosphere, while at warmer temperatures other ice nuclei types are needed. We show that in some regions soot is the most important ice nuclei (below -15oC), while in others feldspar dust dominates. Our results suggest that there is a strong anthropogenic contribution to the ice nuclei population, since a large proportion of soot aerosol in the atmosphere results from human activities. Atkinson, J. D., Murray, B. J., Woodhouse, M. T., Carslaw, K. S., Whale, T. F., Baustian, K. J., Dobbie, S., O'Sullivan, D., and Malkin, T. L.: The importance of feldspar for ice nucleation by mineral dust in mixed-phase clouds, Nature, 10.1038/nature12278, (2013). Demott, P. J. 1990. An Exploratory-Study of Ice Nucleation by Soot Aerosols. Journal of Applied Meteorology, 29, 1072-1079.

Comparison of skating kinetics and kinematics on ice and on a synthetic surface.

PubMed

Stidwill, T J; Pearsall, David; Turcotte, Rene

2010-03-01

The recent popularization and technological improvements of synthetic or artificial ice surfaces provide an attractive alternative to real ice in venues where the latter is impractical to install. Potentially, synthetic ice (SI) may be installed in controlled laboratory settings to permit detailed biomechanical analysis of skating manoeuvres. Unknown, however, is the extent to which skating on SI replicates skating on traditional ice (ICE). Hence, the purpose of this study was to compare kinetic and kinematic forward skating parameters between SI and ICE surfaces. With 11 male hockey players, a portable strain gauge system adhered to the outside of the skate blade holder was used to measure skate propulsive force synchronized with electrogoniometers for tracking dynamic knee and ankle movements during forward skating acceleration. In general, the kinetic and kinematic variables investigated in this study showed minimal differences between the two surfaces (P > 0.06), and no individual variable differences were identified between the two surfaces (P > or = 0.1) with the exception of greater knee extension on SI than ICE (15.2 degrees to 11.0 degrees; P < or = 0.05). Overall, SI surfaces permit comparable mechanics for on-ice forward skating, and thus offer the potential for valid analogous conditions for in-lab testing and training.

Modeling the relative contributions of secondary ice formation processes to ice crystal number concentrations within mixed-phase clouds

NASA Astrophysics Data System (ADS)

Sullivan, Sylvia; Hoose, Corinna; Nenes, Athanasios

2016-04-01

Measurements of in-cloud ice crystal number concentrations can be three or four orders of magnitude greater than the in-cloud ice nuclei number concentrations. This discrepancy can be explained by various secondary ice formation processes, which occur after initial ice nucleation, but the relative importance of these processes, and even the exact physics of each, is still unclear. A simple bin microphysics model (2IM) is constructed to investigate these knowledge gaps. 2IM extends the time-lag collision parameterization of Yano and Phillips, 2011 to include rime splintering, ice-ice aggregation, and droplet shattering and to incorporate the aspect ratio evolution as in Jensen and Harrington, 2015. The relative contribution of the secondary processes under various conditions are shown. In particular, temperature-dependent efficiencies are adjusted for ice-ice aggregation versus collision around -15°C, when rime splintering is no longer active, and the effect of aspect ratio on the process weighting is explored. The resulting simulations are intended to guide secondary ice formation parameterizations in larger-scale mixed-phase cloud schemes.

New transformations between crystalline and amorphous ice

NASA Technical Reports Server (NTRS)

Hemley, R. J.; Chen, L. C.; Mao, H. K.

1989-01-01

High-pressure optical and spectroscopic techniques were used to obtain directly the ice I(h) - hda-ice transformation in a diamond-anvil cell, and the stability of the amorphous form is examined as functions of pressure and temperature. It is demonstrated that hda-ice transforms abruptly at 4 GPa and 77 K to a crystalline phase close in structure to orientationally disordered ice-VII and to a more highly ordered, ice-VIII-like structure at higher temperatures. This is the first time that an amorphous solid is observed to convert to a crystalline solid at low temperatures by compression alone. Phase transitions of this type may be relevant on icy planetary satellites, and there may also be implications for the high-pressure behavior of silica.

Retrieval of Ice Cloud Properties Using Variable Phase Functions

NASA Astrophysics Data System (ADS)

Heck, Patrick W.; Minnis, Patrick; Yang, Ping; Chang, Fu-Lung; Palikonda, Rabindra; Arduini, Robert F.; Sun-Mack, Sunny

2009-03-01

An enhancement to NASA Langley's Visible Infrared Solar-infrared Split-window Technique (VISST) is developed to identify and account for situations when errors are induced by using smooth ice crystals. The retrieval scheme incorporates new ice cloud phase functions that utilize hexagonal crystals with roughened surfaces. In some situations, cloud optical depths are reduced, hence, cloud height is increased. Cloud effective particle size also changes with the roughened ice crystal models which results in varied effects on the calculation of ice water path. Once validated and expanded, the new approach will be integrated in the CERES MODIS algorithm and real-time retrievals at Langley.

Using Radar, Lidar, and Radiometer measurements to Classify Cloud Type and Study Middle-Level Cloud Properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Zhien

2010-06-29

The project is mainly focused on the characterization of cloud macrophysical and microphysical properties, especially for mixed-phased clouds and middle level ice clouds by combining radar, lidar, and radiometer measurements available from the ACRF sites. First, an advanced mixed-phase cloud retrieval algorithm will be developed to cover all mixed-phase clouds observed at the ACRF NSA site. The algorithm will be applied to the ACRF NSA observations to generate a long-term arctic mixed-phase cloud product for model validations and arctic mixed-phase cloud processes studies. To improve the representation of arctic mixed-phase clouds in GCMs, an advanced understanding of mixed-phase cloud processesmore » is needed. By combining retrieved mixed-phase cloud microphysical properties with in situ data and large-scale meteorological data, the project aim to better understand the generations of ice crystals in supercooled water clouds, the maintenance mechanisms of the arctic mixed-phase clouds, and their connections with large-scale dynamics. The project will try to develop a new retrieval algorithm to study more complex mixed-phase clouds observed at the ACRF SGP site. Compared with optically thin ice clouds, optically thick middle level ice clouds are less studied because of limited available tools. The project will develop a new two wavelength radar technique for optically thick ice cloud study at SGP site by combining the MMCR with the W-band radar measurements. With this new algorithm, the SGP site will have a better capability to study all ice clouds. Another area of the proposal is to generate long-term cloud type classification product for the multiple ACRF sites. The cloud type classification product will not only facilitates the generation of the integrated cloud product by applying different retrieval algorithms to different types of clouds operationally, but will also support other research to better understand cloud properties and to validate model simulations. The ultimate goal is to improve our cloud classification algorithm into a VAP.« less

Many-Body Interactions in Ice

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pham, C. Huy; Reddy, Sandeep K.; Chen, Karl

Many-body effects in ice are investigated through a systematic analysis of the lattice energies of several proton ordered and disordered phases, which are calculated with different flexible water models, ranging from pairwise additive (q-TIP4P/F) to polarizable (TTM3-F and AMOE-BA BA) and explicit many-body (MB-pol) potential energy functions. Comparisons with available experimental and diffusion Monte Carlo data emphasize the importance of an accurate description of the individual terms of the many-body expansion of the interaction energy between water molecules for the correct prediction of the energy ordering of the ice phases. Further analysis of the MB-pol results, in terms of fundamentalmore » energy contributions, demonstrates that the differences in lattice energies between different ice phases are sensitively dependent on the subtle balance between short-range two-body and three-body interactions, many-body induction, and dispersion energy. Here, by correctly reproducing many-body effects at both short range and long range, it is found that MB-pol accurately predicts the energetics of different ice phases, which provides further support for the accuracy of MB-pol in representing the properties of water from the gas to the condensed phase.« less

Many-Body Interactions in Ice

DOE PAGES

Pham, C. Huy; Reddy, Sandeep K.; Chen, Karl; ...

2017-02-28

Many-body effects in ice are investigated through a systematic analysis of the lattice energies of several proton ordered and disordered phases, which are calculated with different flexible water models, ranging from pairwise additive (q-TIP4P/F) to polarizable (TTM3-F and AMOE-BA BA) and explicit many-body (MB-pol) potential energy functions. Comparisons with available experimental and diffusion Monte Carlo data emphasize the importance of an accurate description of the individual terms of the many-body expansion of the interaction energy between water molecules for the correct prediction of the energy ordering of the ice phases. Further analysis of the MB-pol results, in terms of fundamentalmore » energy contributions, demonstrates that the differences in lattice energies between different ice phases are sensitively dependent on the subtle balance between short-range two-body and three-body interactions, many-body induction, and dispersion energy. Here, by correctly reproducing many-body effects at both short range and long range, it is found that MB-pol accurately predicts the energetics of different ice phases, which provides further support for the accuracy of MB-pol in representing the properties of water from the gas to the condensed phase.« less

Two-dimensional ice mapping of molecular cores

NASA Astrophysics Data System (ADS)

Noble, J. A.; Fraser, H. J.; Pontoppidan, K. M.; Craigon, A. M.

2017-06-01

We present maps of the column densities of H2O, CO2 and CO ices towards the molecular cores B 35A, DC 274.2-00.4, BHR 59 and DC 300.7-01.0. These ice maps, probing spatial distances in molecular cores as low as 2200 au, challenge the traditional hypothesis that the denser the region observed, the more ice is present, providing evidence that the relationships between solid molecular species are more varied than the generic picture we often adopt to model gas-grain chemical processes and explain feedback between solid phase processes and gas phase abundances. We present the first combined solid-gas maps of a single molecular species, based upon observations of both CO ice and gas phase C18O towards B 35A, a star-forming dense core in Orion. We conclude that molecular species in the solid phase are powerful tracers of 'small-scale' chemical diversity, prior to the onset of star formation. With a component analysis approach, we can probe the solid phase chemistry of a region at a level of detail greater than that provided by statistical analyses or generic conclusions drawn from single pointing line-of-sight observations alone.

Buckling failure of square ice-nanotube arrays constrained in graphene nanocapillaries.

PubMed

Zhu, YinBo; Wang, FengChao; Wu, HengAn

2016-08-07

Graphene confinement provides a new physical and mechanical environment with ultrahigh van der Waals pressure, resulting in new quasi-two-dimensional phases of few-layer ice. Polymorphic transition can occur in bilayer constrained water/ice system. Here, we perform a comprehensive study of the phase transition of AA-stacked bilayer water constrained within a graphene nanocapillary. The compression-limit and superheating-limit (phase) diagrams are obtained, based on the extensive molecular-dynamics simulations at numerous thermodynamic states. Liquid-to-solid, solid-to-solid, and solid-to-liquid-to-solid phase transitions are observed in the compression and superheating of bilayer water. Interestingly, there is a temperature threshold (∼275 K) in the compression-limit diagram, which indicates that the first-order and continuous-like phase transitions of bilayer water depend on the temperature. Two obviously different physical processes, compression and superheating, display similar structural evolution; that is, square ice-nanotube arrays (BL-VHDI) will bend first and then transform into bilayer triangular AA stacking ice (BL-AAI). The superheating limit of BL-VHDI exhibits local maxima, while that of BL-AAI increases monotonically. More importantly, from a mechanics point of view, we propose a novel mechanism of the transformation from BL-VHDI to BL-AAI, both for the compression and superheating limits. This structural transformation can be regarded as the "buckling failure" of the square-ice-nanotube columns, which is dominated by the lateral pressure.

Replication of each copy of the yeast 2 micron DNA plasmid occurs during the S phase.

PubMed

Zakian, V A; Brewer, B J; Fangman, W L

1979-08-01

Saccharomyces cerevisiae contains 50-100 copies per cell of a circular plasmid called 2 micron DNA. Replication of this DNA was studied in two ways. The distribution of replication events among 2 micron DNA molecules was examined by density transfer experiments with asynchronous cultures. The data show that 2 micron DNA replication is similar to chromosomal DNA replication: essentially all 2 micron duplexes were of hybrid density at one cell doubling after the density transfer, with the majority having one fully dense strand and one fully light strand. The results show that replication of 2 micron DNA occurs by a semiconservative mechanism where each of the plasmid molecules replicates once each cell cycle. 2 micron DNA is the only known example of a multiple-copy, extrachromosomal DNA in which every molecule replicates in each cell cycle. Quantitative analysis of the data indicates that 2 micron DNA replication is limited to a fraction of the cell cycle. The period in the cell cycle when 2 micron DNA replicates was examined directly with synchronous cell cultures. Synchronization was accomplished by sequentially arresting cells in G1 phase using the yeast pheromone alpha-factor and incubating at the restrictive temperature for a cell cycle (cdc 7) mutant. Replication was monitored by adding 3H-uracil to cells previously labeled with 14C-uracil, and determining the 3H/14C ratio for purified DNA species. 2 micron DNA replication did not occur during the G1 arrest periods. However, the population of 2 micron DNA doubled during the synchronous S phase at the permissive temperature, with most of the replication occurring in the first third of S phase. Our results indicate that a mechanism exists which insures that the origin of replication of each 2 micron DNA molecule is activated each S phase. As with chromosomal DNA, further activation is prevented until the next cell cycle. We propose that the mechanism which controls the replication initiation of each 2 micron DNA molecule is identical to that which controls the initiation of chromosomal DNA.

Intercomparison study and optical asphericity measurements of small ice particles in the CERN CLOUD experiment

NASA Astrophysics Data System (ADS)

Nichman, Leonid; Järvinen, Emma; Dorsey, James; Connolly, Paul; Duplissy, Jonathan; Fuchs, Claudia; Ignatius, Karoliina; Sengupta, Kamalika; Stratmann, Frank; Möhler, Ottmar; Schnaiter, Martin; Gallagher, Martin

2017-09-01

Optical probes are frequently used for the detection of microphysical cloud particle properties such as liquid and ice phase, size and morphology. These properties can eventually influence the angular light scattering properties of cirrus clouds as well as the growth and accretion mechanisms of single cloud particles. In this study we compare four commonly used optical probes to examine their response to small cloud particles of different phase and asphericity. Cloud simulation experiments were conducted at the Cosmics Leaving OUtdoor Droplets (CLOUD) chamber at European Organisation for Nuclear Research (CERN). The chamber was operated in a series of multi-step adiabatic expansions to produce growth and sublimation of ice particles at super- and subsaturated ice conditions and for initial temperatures of -30, -40 and -50 °C. The experiments were performed for ice cloud formation via homogeneous ice nucleation. We report the optical observations of small ice particles in deep convection and in situ cirrus simulations. Ice crystal asphericity deduced from measurements of spatially resolved single particle light scattering patterns by the Particle Phase Discriminator mark 2 (PPD-2K, Karlsruhe edition) were compared with Cloud and Aerosol Spectrometer with Polarisation (CASPOL) measurements and image roundness captured by the 3View Cloud Particle Imager (3V-CPI). Averaged path light scattering properties of the simulated ice clouds were measured using the Scattering Intensity Measurements for the Optical detectioN of icE (SIMONE) and single particle scattering properties were measured by the CASPOL. We show the ambiguity of several optical measurements in ice fraction determination of homogeneously frozen ice in the case where sublimating quasi-spherical ice particles are present. Moreover, most of the instruments have difficulties of producing reliable ice fraction if small aspherical ice particles are present, and all of the instruments cannot separate perfectly spherical ice particles from supercooled droplets. Correlation analysis of bulk averaged path depolarisation measurements and single particle measurements of these clouds showed higher R2 values at high concentrations and small diameters, but these results require further confirmation. We find that none of these instruments were able to determine unambiguously the phase of the small particles. These results have implications for the interpretation of atmospheric measurements and parametrisations for modelling, particularly for low particle number concentration clouds.

Highly stable loading of Mcm proteins onto chromatin in living cells requires replication to unload

PubMed Central

Kuipers, Marjorie A.; Stasevich, Timothy J.; Sasaki, Takayo; Wilson, Korey A.; Hazelwood, Kristin L.; McNally, James G.; Davidson, Michael W.

2011-01-01

The heterohexameric minichromosome maintenance protein complex (Mcm2-7) functions as the eukaryotic helicase during DNA replication. Mcm2-7 loads onto chromatin during early G1 phase but is not converted into an active helicase until much later during S phase. Hence, inactive Mcm complexes are presumed to remain stably bound from early G1 through the completion of S phase. Here, we investigated Mcm protein dynamics in live mammalian cells. We demonstrate that Mcm proteins are irreversibly loaded onto chromatin cumulatively throughout G1 phase, showing no detectable exchange with a gradually diminishing soluble pool. Eviction of Mcm requires replication; during replication arrest, Mcm proteins remained bound indefinitely. Moreover, the density of immobile Mcms is reduced together with chromatin decondensation within sites of active replication, which provides an explanation for the lack of colocalization of Mcm with replication fork proteins. These results provide in vivo evidence for an exceptionally stable lockdown mechanism to retain all loaded Mcm proteins on chromatin throughout prolonged cell cycles. PMID:21220507

The effect of salt on the melting of ice: A molecular dynamics simulation study.

PubMed

Kim, Jun Soo; Yethiraj, Arun

2008-09-28

The effect of added salt (NaCl) on the melting of ice is studied using molecular dynamics simulations. The equilibrium freezing point depression observed in the simulations is in good agreement with experimental data. The kinetic aspects of melting are investigated in terms of the exchange of water molecules between ice and the liquid phase. The ice/liquid equilibrium is a highly dynamic process with frequent exchange of water molecules between ice and the liquid phase. The balance is disturbed when ice melts and the melting proceeds in two stages; the inhibition of the association of water molecules to the ice surface at short times, followed by the increased dissociation of water molecules from the ice surface at longer times. We also find that Cl(-) ions penetrate more deeply into the interfacial region than Na(+) ions during melting. This study provides an understanding of the kinetic aspects of melting that could be useful in other processes such as the inhibition of ice growth by antifreeze proteins.

Impacts of Subgrid Heterogeneous Mixing between Cloud Liquid and Ice on the Wegner-Bergeron-Findeisen Process and Mixed-phase Clouds in NCAR CAM5

NASA Astrophysics Data System (ADS)

Liu, X.; Zhang, M.; Zhang, D.; Wang, Z.; Wang, Y.

2017-12-01

Mixed-phase clouds are persistently observed over the Arctic and the phase partitioning between cloud liquid and ice hydrometeors in mixed-phase clouds has important impacts on the surface energy budget and Arctic climate. In this study, we test the NCAR Community Atmosphere Model Version 5 (CAM5) with the single-column and weather forecast configurations and evaluate the model performance against observation data from the DOE Atmospheric Radiation Measurement (ARM) Program's M-PACE field campaign in October 2004 and long-term ground-based multi-sensor remote sensing measurements. Like most global climate models, we find that CAM5 also poorly simulates the phase partitioning in mixed-phase clouds by significantly underestimating the cloud liquid water content. Assuming pocket structures in the distribution of cloud liquid and ice in mixed-phase clouds as suggested by in situ observations provides a plausible solution to improve the model performance by reducing the Wegner-Bergeron-Findeisen (WBF) process rate. In this study, the modification of the WBF process in the CAM5 model has been achieved with applying a stochastic perturbation to the time scale of the WBF process relevant to both ice and snow to account for the heterogeneous mixture of cloud liquid and ice. Our results show that this modification of WBF process improves the modeled phase partitioning in the mixed-phase clouds. The seasonal variation of mixed-phase cloud properties is also better reproduced in the model in comparison with the long-term ground-based remote sensing observations. Furthermore, the phase partitioning is insensitive to the reassignment time step of perturbations.

Spatio-temporal re-organization of replication foci accompanies replication domain consolidation during human pluripotent stem cell lineage specification

PubMed Central

Wilson, Korey A.; Elefanty, Andrew G.; Stanley, Edouard G.; Gilbert, David M.

2016-01-01

ABSTRACT Lineage specification of both mouse and human pluripotent stem cells (PSCs) is accompanied by spatial consolidation of chromosome domains and temporal consolidation of their replication timing. Replication timing and chromatin organization are both established during G1 phase at the timing decision point (TDP). Here, we have developed live cell imaging tools to track spatio-temporal replication domain consolidation during differentiation. First, we demonstrate that the fluorescence ubiquitination cell cycle indicator (Fucci) system is incapable of demarcating G1/S or G2/M cell cycle transitions. Instead, we employ a combination of fluorescent PCNA to monitor S phase progression, cytokinesis to demarcate mitosis, and fluorescent nucleotides to label early and late replication foci and track their 3D organization into sub-nuclear chromatin compartments throughout all cell cycle transitions. We find that, as human PSCs differentiate, the length of S phase devoted to replication of spatially clustered replication foci increases, coincident with global compartmentalization of domains into temporally clustered blocks of chromatin. Importantly, re-localization and anchorage of domains was completed prior to the onset of S phase, even in the context of an abbreviated PSC G1 phase. This approach can also be employed to investigate cell fate transitions in single PSCs, which could be seen to differentiate preferentially from G1 phase. Together, our results establish real-time, live-cell imaging methods for tracking cell cycle transitions during human PSC differentiation that can be applied to study chromosome domain consolidation and other aspects of lineage specification. PMID:27433885

Planetary Ice-Oceans: Numerical Modeling Study of Ice-Shell Growth in Convecting Two-Phase Systems

NASA Astrophysics Data System (ADS)

Allu Peddinti, Divya; McNamara, Allen

2017-04-01

Several icy bodies in the Solar system such as the icy moons Europa and Enceladus exhibit signs of subsurface oceans underneath an ice-shell. For Europa, the geologically young surface, the presence of surface features and the aligned surface chemistry pose interesting questions about formation of the ice-shell and its interaction with the ocean below. This also ties in with its astrobiological potential and implications for similar ice-ocean systems elsewhere in the cosmos. The overall thickness of the H2O layer on Europa is estimated to be 100-150 km while the thickness of the ice-shell is debated. Additionally, Europa is subject to tidal heating due to interaction with Jupiter's immense gravity field. It is of interest to understand how the ice-shell thickness varies in the presence of tidal internal heating and the localization of heating in different regions of the ice-shell. Thus this study aims to determine the effect of tidal internal heating on the growth rate of the ice-shell over time. We perform geodynamic modeling of the ice-ocean system in order to understand how the ice-shell thickness changes with time. The convection code employs the ice Ih-water phase diagram in order to model the two-phase convecting ice-ocean system. All the models begin from an initial warm thick ocean that cools from the top. The numerical experiments analyze three cases: case 1 with no tidal internal heating in the system, case 2 with constant tidal internal heating in the ice and case 3 with viscosity-dependent tidal internal heating in the ice. We track the ice-shell thickness as a function of time as the system cools. Modeling results so far have identified that the shell growth rate changes substantially at a point in time that coincides with a change in the planform of ice-convection cells. Additionally, the velocity vs depth plots indicate a shift from a conduction dominant to a convection dominant ice regime. We compare the three different cases to provide a comprehensive understanding of the temporal variation in the ice-shell thickness due to the addition of heating in the ice.

Condensed-phase biogenic–anthropogenic interactions with implications for cold cloud formation

DOE PAGES

Charnawskas, Joseph C.; Alpert, Peter A.; Lambe, Andrew T.; ...

2017-01-24

Anthropogenic and biogenic gas emissions contribute to the formation of secondary organic aerosol (SOA). When present, soot particles from fossil fuel combustion can acquire a coating of SOA. We investigate SOA–soot biogenic–anthropogenic interactions and their impact on ice nucleation in relation to the particles’ organic phase state. SOA particles were generated from the OH oxidation of naphthalene, α-pinene, longifolene, or isoprene, with or without the presence of sulfate or soot particles. Corresponding particle glass transition (T g) and full deliquescence relative humidity (FDRH) were estimated using a numerical diffusion model. Longifolene SOA particles are solid-like and all biogenic SOA sulfatemore » mixtures exhibit a core–shell configuration (i.e.a sulfate-rich core coated with SOA). Biogenic SOA with or without sulfate formed ice at conditions expected for homogeneous ice nucleation, in agreement with respectiveT gand FDRH. α-pinene SOA coated soot particles nucleated ice above the homogeneous freezing temperature with soot acting as ice nuclei (IN). At lower temperatures the α-pinene SOA coating can be semisolid, inducing ice nucleation. Naphthalene SOA coated soot particles acted as ice nuclei above and below the homogeneous freezing limit, which can be explained by the presence of a highly viscous SOA phase. Our results suggest that biogenic SOA does not play a significant role in mixed-phase cloud formation and the presence of sulfate renders this even less likely. However, anthropogenic SOA may have an enhancing effect on cloud glaciation under mixed-phase and cirrus cloud conditions compared to biogenic SOA that dominate during pre-industrial times or in pristine areas.« less

Condensed-phase biogenic-anthropogenic interactions with implications for cold cloud formation.

PubMed

Charnawskas, Joseph C; Alpert, Peter A; Lambe, Andrew T; Berkemeier, Thomas; O'Brien, Rachel E; Massoli, Paola; Onasch, Timothy B; Shiraiwa, Manabu; Moffet, Ryan C; Gilles, Mary K; Davidovits, Paul; Worsnop, Douglas R; Knopf, Daniel A

2017-08-24

Anthropogenic and biogenic gas emissions contribute to the formation of secondary organic aerosol (SOA). When present, soot particles from fossil fuel combustion can acquire a coating of SOA. We investigate SOA-soot biogenic-anthropogenic interactions and their impact on ice nucleation in relation to the particles' organic phase state. SOA particles were generated from the OH oxidation of naphthalene, α-pinene, longifolene, or isoprene, with or without the presence of sulfate or soot particles. Corresponding particle glass transition (T g ) and full deliquescence relative humidity (FDRH) were estimated using a numerical diffusion model. Longifolene SOA particles are solid-like and all biogenic SOA sulfate mixtures exhibit a core-shell configuration (i.e. a sulfate-rich core coated with SOA). Biogenic SOA with or without sulfate formed ice at conditions expected for homogeneous ice nucleation, in agreement with respective T g and FDRH. α-pinene SOA coated soot particles nucleated ice above the homogeneous freezing temperature with soot acting as ice nuclei (IN). At lower temperatures the α-pinene SOA coating can be semisolid, inducing ice nucleation. Naphthalene SOA coated soot particles acted as ice nuclei above and below the homogeneous freezing limit, which can be explained by the presence of a highly viscous SOA phase. Our results suggest that biogenic SOA does not play a significant role in mixed-phase cloud formation and the presence of sulfate renders this even less likely. However, anthropogenic SOA may have an enhancing effect on cloud glaciation under mixed-phase and cirrus cloud conditions compared to biogenic SOA that dominate during pre-industrial times or in pristine areas.

Intercomparison of cloud model simulations of Arctic mixed-phase boundary layer clouds observed during SHEBA/FIRE-ACE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Morrison, H.; Zuidema, Paquita; Ackerman, Andrew

2011-06-16

An intercomparison of six cloud-resolving and large-eddy simulation models is presented. This case study is based on observations of a persistent mixed-phase boundary layer cloud gathered on 7 May, 1998 from the Surface Heat Budget of Arctic Ocean (SHEBA) and First ISCCP Regional Experiment - Arctic Cloud Experiment (FIRE-ACE). Ice nucleation is constrained in the simulations in a way that holds the ice crystal concentration approximately fixed, with two sets of sensitivity runs in addition to the baseline simulations utilizing different specified ice nucleus (IN) concentrations. All of the baseline and sensitivity simulations group into two distinct quasi-steady states associatedmore » with either persistent mixed-phase clouds or all-ice clouds after the first few hours of integration, implying the existence of multiple equilibria. These two states are associated with distinctly different microphysical, thermodynamic, and radiative characteristics. Most but not all of the models produce a persistent mixed-phase cloud qualitatively similar to observations using the baseline IN/crystal concentration, while small increases in the IN/crystal concentration generally lead to rapid glaciation and conversion to the all-ice state. Budget analysis indicates that larger ice deposition rates associated with increased IN/crystal concentrations have a limited direct impact on dissipation of liquid in these simulations. However, the impact of increased ice deposition is greatly enhanced by several interaction pathways that lead to an increased surface precipitation flux, weaker cloud top radiative cooling and cloud dynamics, and reduced vertical mixing, promoting rapid glaciation of the mixed-phase cloud for deposition rates in the cloud layer greater than about 1-2x10-5 g kg-1 s-1. These results indicate the critical importance of precipitation-radiative-dynamical interactions in simulating cloud phase, which have been neglected in previous fixed-dynamical parcel studies of the cloud phase parameter space. Large sensitivity to the IN/crystal concentration also suggests the need for improved understanding of ice nucleation and its parameterization in models.« less

Impact of the Bergeron-Findeisen process on the release of aerosol particles during the evolution of cloud ice

NASA Astrophysics Data System (ADS)

Schwarzenböck, A.; Mertes, S.; Heintzenberg, J.; Wobrock, W.; Laj, P.

The paper focuses on the redistribution of aerosol particles (APs) during the artificial nucleation and subsequent growth of ice crystals in a supercooled cloud. A significant number of the supercooled cloud droplets during icing periods (seeding agents: C 3H 8, CO 2) did not freeze as was presumed prior to the experiment but instead evaporated. The net mass flux of water vapour from the evaporating droplets to the nucleating ice crystals (Bergeron-Findeisen mechanism) led to the release of residual particles that simultaneously appeared in the interstitial phase. The strong decrease of the droplet residuals confirms the nucleation of ice particles on seeding germs without natural aerosol particles serving as ice nuclei. As the number of residual particles during the seedings did not drop to zero, other processes such as heterogeneous ice nucleation, spontaneous freezing, entrainment of supercooled droplets and diffusion to the created particle-free ice germs must have contributed to the experimental findings. During the icing periods, residual mass concentrations in the condensed phase dropped by a factor of 1.1-6.7, as compared to the unperturbed supercooled cloud. As the Bergeron-Findeisen process also occurs without artificial seeding in the atmosphere, this study demonstrated that the hydrometeors in mixed-phase clouds might be much cleaner than anticipated for the simple freezing process of supercooled droplets in tropospheric mid latitude clouds.

DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity

PubMed Central

Diamant, Noam; Hendel, Ayal; Vered, Ilan; Carell, Thomas; Reißner, Thomas; de Wind, Niels; Geacinov, Nicholas; Livneh, Zvi

2012-01-01

Translesion DNA synthesis (TLS) employs low-fidelity DNA polymerases to bypass replication-blocking lesions, and being associated with chromosomal replication was presumed to occur in the S phase of the cell cycle. Using immunostaining with anti-replication protein A antibodies, we show that in UV-irradiated mammalian cells, chromosomal single-stranded gaps formed in S phase during replication persist into the G2 phase of the cell cycle, where their repair is completed depending on DNA polymerase ζ and Rev1. Analysis of TLS using a high-resolution gapped-plasmid assay system in cell populations enriched by centrifugal elutriation for specific cell cycle phases showed that TLS operates both in S and G2. Moreover, the mutagenic specificity of TLS in G2 was different from S, and in some cases overall mutation frequency was higher. These results suggest that TLS repair of single-stranded gaps caused by DNA lesions can lag behind chromosomal replication, is separable from it, and occurs both in the S and G2 phases of the cell cycle. Such a mechanism may function to maintain efficient replication, which can progress despite the presence of DNA lesions, with TLS lagging behind and patching regions of discontinuity. PMID:21908406

Thermodynamic Stability of Ice II and Its Hydrogen-Disordered Counterpart: Role of Zero-Point Energy.

PubMed

Nakamura, Tatsuya; Matsumoto, Masakazu; Yagasaki, Takuma; Tanaka, Hideki

2016-03-03

We investigate why no hydrogen-disordered form of ice II has been found in nature despite the fact that most of hydrogen-ordered ices have hydrogen-disordered counterparts. The thermodynamic stability of a set of hydrogen-ordered ice II variants relative to ice II is evaluated theoretically. It is found that ice II is more stable than the disordered variants so generated as to satisfy the simple ice rule due to the lower zero-point energy as well as the pair interaction energy. The residual entropy of the disordered ice II phase gradually compensates the unfavorable free energy with increasing temperature. The crossover, however, occurs at a high temperature well above the melting point of ice III. Consequently, the hydrogen-disordered phase does not exist in nature. The thermodynamic stability of partially hydrogen-disordered ices is also scrutinized by examining the free-energy components of several variants obtained by systematic inversion of OH directions in ice II. The potential energy of one variant is lower than that of the ice II structure, but its Gibbs free energy is slightly higher than that of ice II due to the zero-point energy. The slight difference in the thermodynamic stability leaves the possibility of the partial hydrogen-disorder in real ice II.

Water in Inhomogeneous Nanoconfinement: Coexistence of Multilayered Liquid and Transition to Ice Nanoribbons.

PubMed

Qiu, Hu; Zeng, Xiao Cheng; Guo, Wanlin

2015-10-27

Phase behavior and the associated phase transition of water within inhomogeneous nanoconfinement are investigated using molecular dynamics simulations. The nanoconfinement is constructed by a flat bottom plate and a convex top plate. At 300 K, the confined water can be viewed as a coexistence of monolayer, bilayer, and trilayer liquid domains to accommodate the inhomogeneous confinement. With increasing liquid density, the confined water with uneven layers transforms separately into two-dimensional ice crystals with unchanged layer number and rhombic in-plane symmetry for oxygen atoms. The monolayer water undergoes the transition first into a puckered ice nanoribbon, and the bilayer water transforms into a rhombic ice nanoribbon next, followed by the transition of trilayer water into a trilayer ice nanoribbon. The sequential localized liquid-to-solid transition within the inhomogeneous confinement can also be achieved by gradually decreasing the temperature at low liquid densities. These findings of phase behaviors of water under the inhomogeneous nanoconfinement not only extend the phase diagram of confined water but also have implications for realistic nanofluidic systems and microporous materials.

Assessing the Impact of Sublimation on the Stable Water Isotope Signal of Surface Ice

NASA Astrophysics Data System (ADS)

Dennis, D. P.; Ehrenfeucht, S.; Marchant, D. R.

2017-12-01

Sublimation is often a significant, if not the dominant, mechanism for ablation in polar and high elevation glacial systems. Previous field studies on firn and ice have suggested that sublimation can enrich the stable water isotope (δD and δ18O) signatures of these exposed materials. Several additional studies have attempted to replicate this effect through laboratory experiments. However, neither the magnitude of alteration caused by sublimation nor the maximum depth at which ice is affected are well-constrained. The effect of sublimation-induced alteration on the original meteoric signal relative to other post-depositional processes is additionally unknown. Here, we present the results of an experimental study on the effect of sublimation on stable water isotope ratios in surface ice. Using high-resolution data, we attempt to assess the suitability of δD and δ18O in near-surface and exposed ice for use as paleoclimate proxies. This type of analysis is particularly useful for future studies of ice from hyper-arid polar regions like the Antarctic McMurdo Dry Valleys, and may be extended to icy planetary bodies, including surface ice on Mars.

Integrative and conjugative elements and their hosts: composition, distribution and organization

PubMed Central

Touchon, Marie; Rocha, Eduardo P. C.

2017-01-01

Abstract Conjugation of single-stranded DNA drives horizontal gene transfer between bacteria and was widely studied in conjugative plasmids. The organization and function of integrative and conjugative elements (ICE), even if they are more abundant, was only studied in a few model systems. Comparative genomics of ICE has been precluded by the difficulty in finding and delimiting these elements. Here, we present the results of a method that circumvents these problems by requiring only the identification of the conjugation genes and the species’ pan-genome. We delimited 200 ICEs and this allowed the first large-scale characterization of these elements. We quantified the presence in ICEs of a wide set of functions associated with the biology of mobile genetic elements, including some that are typically associated with plasmids, such as partition and replication. Protein sequence similarity networks and phylogenetic analyses revealed that ICEs are structured in functional modules. Integrases and conjugation systems have different evolutionary histories, even if the gene repertoires of ICEs can be grouped in function of conjugation types. Our characterization of the composition and organization of ICEs paves the way for future functional and evolutionary analyses of their cargo genes, composed of a majority of unknown function genes. PMID:28911112

New particle dependant parameterizations of heterogeneous freezing processes.

NASA Astrophysics Data System (ADS)

Diehl, Karoline; Mitra, Subir K.

2014-05-01

For detailed investigations of cloud microphysical processes an adiabatic air parcel model with entrainment is used. It represents a spectral bin model which explicitly solves the microphysical equations. The initiation of the ice phase is parameterized and describes the effects of different types of ice nuclei (mineral dust, soot, biological particles) in immersion, contact, and deposition modes. As part of the research group INUIT (Ice Nuclei research UnIT), existing parameterizations have been modified for the present studies and new parameterizations have been developed mainly on the basis of the outcome of INUIT experiments. Deposition freezing in the model is dependant on the presence of dry particles and on ice supersaturation. The description of contact freezing combines the collision kernel of dry particles with the fraction of frozen drops as function of temperature and particle size. A new parameterization of immersion freezing has been coupled to the mass of insoluble particles contained in the drops using measured numbers of ice active sites per unit mass. Sensitivity studies have been performed with a convective temperature and dew point profile and with two dry aerosol particle number size distributions. Single and coupled freezing processes are studied with different types of ice nuclei (e.g., bacteria, illite, kaolinite, feldspar). The strength of convection is varied so that the simulated cloud reaches different levels of temperature. As a parameter to evaluate the results the ice water fraction is selected which is defined as the relation of the ice water content to the total water content. Ice water fractions between 0.1 and 0.9 represent mixed-phase clouds, larger than 0.9 ice clouds. The results indicate the sensitive parameters for the formation of mixed-phase and ice clouds are: 1. broad particle number size distribution with high number of small particles, 2. temperatures below -25°C, 3. specific mineral dust particles as ice nuclei such as illite or montmorillonite. Coupled cases of deposition and contact freezing show that they are hardly in competition because of differences in the preferred particle sizes. In the contact mode, small particles are less efficient for collisions as well as less efficient as ice nuclei so that these are available for deposition freezing. On the other hand, immersion freezing is the dominant process when it is coupled with deposition freezing. As it is initiated earlier the formed ice particles consume water vapor for growing. The competition of combined contact and immersion freezing leads to lower ice water contents because more ice particles are formed via the immersion mode. In general, ice clouds and mixed-phase clouds with high ice water fractions are not directly the result of primary ice formation but of secondary ice formation and growth of ice particles at the expense of liquid drops.

Modeling the imprint of Milankovitch cycles on early Pleistocene ice volume

NASA Astrophysics Data System (ADS)

Roychowdhury, R.; DeConto, R.; Pollard, D.

2017-12-01

Global climate during Quaternary and Late Pliocene (present-3.1 Ma) is characterized by alternating glacial and interglacial conditions. Several proposed theories associate these cycles with variations in the Earth's orbital configuration. In this study, we attempt to address the anomalously strong obliquity forcing in the Late Pliocene/Early Pleistocene ice volume records (41 kyr world), which stands in sharp contrast to the primary cyclicity of insolation, which is at precessional periods (23 kyr). Model results from GCM simulations show that at low eccentricities (e<0.015), the effect of precession is minimal, and the integrated insolation metrics (such as summer metric, PDD, etc.) vary in-phase between the two hemispheres. At higher eccentricities (e>0.015), precessional response is important, and the insolation metrics vary out-of-phase between the two hemispheres. Using simulations from a GCM-driven ice sheet model, we simulate time continuous ice volume changes from Northern and Southern Hemispheres. Under eccentricities lower than 0.015, ice sheets in both hemispheres respond only to obliquity cycle, and grow and melt together (in-phase). If the ice sheet is simulated with eccentricity higher than 0.015, both hemispheres become more sensitive to precessional variation, and vary out-of-phase with each other, which is consistent with proxy observations from the late Pleistocene glaciations. We use the simulated ice volumes from 2.0 to 1.0 ma to empirically calculate global benthic δ18O variations based on the assumption that relationships between collapse and growth of ice-sheets and sea level is linear and symmetric and that the isotopic signature of the individual ice-sheets has not changed with time. Our modeled global benthic δ18O values are broadly consistent with the paleoclimate proxy records such as the LR04 stack.

TOWARDS ICE FORMATION CLOSURE IN MIXED-PHASE BOUNDARY LAYER CLOUDS DURING ISDAC

NASA Astrophysics Data System (ADS)

Avramov, A.; Ackerman, A. S.; Fridlind, A. M.; van Diedenhoven, B.; Korolev, A. V.

2009-12-01

Mixed-phase stratus clouds are ubiquitous in the Arctic during the winter and transition seasons. Despite their important role in various climate feedback mechanisms they are not well understood and are difficult to represent faithfully in cloud models. In particular, models of all types experience difficulties reproducing observed ice concentrations and liquid/ice water partitioning in these clouds. Previous studies have demonstrated that simulated ice concentrations and ice water content are critically dependent on ice nucleation modes and ice crystal habit assumed in simulations. In this study we use large-eddy simulations with size-resolved microphysics to determine whether uncertainties in ice nucleus concentrations, ice nucleation mechanisms, ice crystal habits and large-scale forcing are sufficient to account for the difference between simulated and observed quantities. We present results of simulations of two case studies based on observations taken during the recent Indirect and Semi-Direct Aerosol Campaign (ISDAC) on April 8 and 26, 2008. The model simulations are evaluated through extensive comparison with in-situ observations and ground-based remote sensing measurements.

In search of the best match: probing a multi-dimensional cloud microphysical parameter space to better understand what controls cloud thermodynamic phase

NASA Astrophysics Data System (ADS)

Tan, Ivy; Storelvmo, Trude

2015-04-01

Substantial improvements have been made to the cloud microphysical schemes used in the latest generation of global climate models (GCMs), however, an outstanding weakness of these schemes lies in the arbitrariness of their tuning parameters, which are also notoriously fraught with uncertainties. Despite the growing effort in improving the cloud microphysical schemes in GCMs, most of this effort has neglected to focus on improving the ability of GCMs to accurately simulate the present-day global distribution of thermodynamic phase partitioning in mixed-phase clouds. Liquid droplets and ice crystals not only influence the Earth's radiative budget and hence climate sensitivity via their contrasting optical properties, but also through the effects of their lifetimes in the atmosphere. The current study employs NCAR's CAM5.1, and uses observations of cloud phase obtained by NASA's CALIOP lidar over a 79-month period (November 2007 to June 2014) guide the accurate simulation of the global distribution of mixed-phase clouds in 20∘ latitudinal bands at the -10∘ C, -20∘C and -30∘C isotherms, by adjusting six relevant cloud microphysical tuning parameters in the CAM5.1 via Quasi-Monte Carlo sampling. Among the parameters include those that control the Wegener-Bergeron-Findeisen (WBF) timescale for the conversion of supercooled liquid droplets to ice and snow in mixed-phase clouds, the fraction of ice nuclei that nucleate ice in the atmosphere, ice crystal sedimentation speed, and wet scavenging in stratiform and convective clouds. Using a Generalized Linear Model as a variance-based sensitivity analysis, the relative contributions of each of the six parameters are quantified to gain a better understanding of the importance of their individual and two-way interaction effects on the liquid to ice proportion in mixed-phase clouds. Thus, the methodology implemented in the current study aims to search for the combination of cloud microphysical parameters in a GCM that produce the most accurate reproduction of observations of cloud thermodynamic phase, while simultaneously assessing the weaknesses of the parameterizations in the model. We find that the simulated proportion of liquid to ice in mixed-phase clouds is dominated by the fraction of active ice nuclei in the atmosphere and the WBF timescale. In a follow-up to this study, we apply these results to a fully-coupled GCM, CESM, and find that cloud thermodynamic phase has profound ramifications for the uncertainty associated with climate sensitivity estimates.

Modis Collection 6 Shortwave-Derived Cloud Phase Classification Algorithm and Comparisons with CALIOP

NASA Technical Reports Server (NTRS)

Marchant, Benjamin; Platnick, Steven; Meyer, Kerry; Arnold, George Thomas; Riedi, Jerome

2016-01-01

Cloud thermodynamic phase (e.g., ice, liquid) classification is an important first step for cloud retrievals from passive sensors such as MODIS (Moderate-Resolution Imaging Spectroradiometer). Because ice and liquid phase clouds have very different scattering and absorbing properties, an incorrect cloud phase decision can lead to substantial errors in the cloud optical and microphysical property products such as cloud optical thickness or effective particle radius. Furthermore, it is well established that ice and liquid clouds have different impacts on the Earth's energy budget and hydrological cycle, thus accurately monitoring the spatial and temporal distribution of these clouds is of continued importance. For MODIS Collection 6 (C6), the shortwave-derived cloud thermodynamic phase algorithm used by the optical and microphysical property retrievals has been completely rewritten to improve the phase discrimination skill for a variety of cloudy scenes (e.g., thin/thick clouds, over ocean/land/desert/snow/ice surface, etc). To evaluate the performance of the C6 cloud phase algorithm, extensive granule-level and global comparisons have been conducted against the heritage C5 algorithm and CALIOP. A wholesale improvement is seen for C6 compared to C5.

The 27-28 October 1986 FIRE IFO Cirrus case study: Comparison of radiative transfer theory with observations by satellite and aircraft

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A.; Suttles, J. T.; Heymsfield, Andrew J.; Welch, Ronald M.; Spinhirne, James D.; Wu, Man-Li C.; Starr, David OC.; Parker, Lindsay; Arduini, Robert F.

1989-01-01

Observations of cirrus and altocumulus clouds during the First International Satellite Cloud Climatology Project Regional Experiment (FIRE) are compared to theoretical models of cloud radiative properties. Three tests are performed. First, LANDSAT radiances are used to compare the relationship between nadir reflectance ot 0.83 micron and beam emittance at 11.5 microns with that predicted for model calculations using spherical and nonspherical phase functions. Good agreement is found between observations and theory when water droplets dominate. Poor agreement is found when ice particles dominate, especially using scattering phase functions for spherical particles. Even when compared to a laboratory measured ice particle phase function, the observations show increased side scattered radiation relative to the theoretical calculations. Second, the anisotropy of conservatively scattered radiation is examined using simultaneous multiple angle views of the cirrus from LANDSAT and ER-2 aircraft radiometers. Observed anisotropy gives good agreement with theoretical calculations using the laboratory measured ice particle phase function and poor agreement with a spherical particle phase function. Third, Landsat radiances at 0.83, 1.65, and 2.21 microns are used to infer particle phase and particle size. For water droplets, good agreement is found with King Air FSSP particle probe measurements in the cloud. For ice particles, the LANDSAT radiance observations predict an effective radius of 60 microns versus aircraft observations of about 200 microns. It is suggested that this descrepancy may be explained by uncertainty in the imaginary index of ice and by inadequate measurements of small ice particles by microphysical probes.

Vertical distribution of microphysical properties of Arctic springtime low-level mixed-phase clouds over the Greenland and Norwegian seas

NASA Astrophysics Data System (ADS)

Mioche, Guillaume; Jourdan, Olivier; Delanoë, Julien; Gourbeyre, Christophe; Febvre, Guy; Dupuy, Régis; Monier, Marie; Szczap, Frédéric; Schwarzenboeck, Alfons; Gayet, Jean-François

2017-10-01

This study aims to characterize the microphysical and optical properties of ice crystals and supercooled liquid droplets within low-level Arctic mixed-phase clouds (MPCs). We compiled and analyzed cloud in situ measurements from four airborne spring campaigns (representing 18 flights and 71 vertical profiles in MPCs) over the Greenland and Norwegian seas mainly in the vicinity of the Svalbard archipelago. Cloud phase discrimination and representative vertical profiles of the number, size, mass and shape of ice crystals and liquid droplets are established. The results show that the liquid phase dominates the upper part of the MPCs. High concentrations (120 cm-3 on average) of small droplets (mean values of 15 µm), with an averaged liquid water content (LWC) of 0.2 g m-3 are measured at cloud top. The ice phase dominates the microphysical properties in the lower part of the cloud and beneath it in the precipitation region (mean values of 100 µm, 3 L-1 and 0.025 g m-3 for diameter, particle concentration and ice water content (IWC), respectively). The analysis of the ice crystal morphology shows that the majority of ice particles are irregularly shaped or rimed particles; the prevailing regular habits found are stellars and plates. We hypothesize that riming and diffusional growth processes, including the Wegener-Bergeron-Findeisen (WBF) mechanism, are the main growth mechanisms involved in the observed MPCs. The impact of larger-scale meteorological conditions on the vertical profiles of MPC properties was also investigated. Large values of LWC and high concentration of smaller droplets are possibly linked to polluted situations and air mass origins from the south, which can lead to very low values of ice crystal size and IWC. On the contrary, clean situations with low temperatures exhibit larger values of ice crystal size and IWC. Several parameterizations relevant for remote sensing or modeling studies are also determined, such as IWC (and LWC) - extinction relationship, ice and liquid integrated water paths, ice concentration and liquid water fraction according to temperature.

Deciphering sub-micron ice particles on Enceladus surface

NASA Astrophysics Data System (ADS)

Scipioni, F.; Schenk, P.; Tosi, F.; D'Aversa, E.; Clark, R.; Combe, J.-Ph.; Ore, C. M. Dalle

2017-07-01

The surface of Saturn's moon Enceladus is composed primarily by pure water ice. The Cassini spacecraft has observed present-day geologic activity at the moon's South Polar Region, related with the formation and feeding of Saturn's E-ring. Plumes of micron-sized particles, composed of water ice and other non-ice contaminants (e.g., CO2, NH3, CH4), erupt from four terrain's fractures named Tiger Stripes. Some of this material falls back on Enceladus' surface to form deposits that extend to the North at ∼40°W and ∼220°W, with the highest concentration found at the South Pole. In this work we analyzed VIMS-IR data to identify plumes deposits across Enceladus' surface through the variation in band depth of the main water ice spectral features. To characterize the global variation of water ice band depths across Enceladus, the entire surface was sampled with an angular resolution of 1° in both latitude and longitude, and for each angular bin we averaged the value of all spectral indices as retrieved by VIMS. The position of the plumes' deposits predicted by theoretical models display a good match with water ice band depths' maps on the trailing hemisphere, whereas they diverge significantly on the leading side. Space weathering processes acting on Enceladus' surface ionize and break up water ice molecules, resulting in the formation of particles smaller than one micron. We also mapped the spectral indices for sub-micron particles and we compared the results with the plumes deposits models. Again, a satisfactory match is observed on the trailing hemisphere only. Finally, we investigated the variation of the depth of the water ice absorption bands as a function of the phase angle. In the visible range, some terrains surrounding the Tiger Stripes show a decrease in albedo when the phase angle is smaller than 10°. This unusual effect cannot be confirmed by near infrared data, since observations with a phase angle lower than 10° are not available. For phase angle values greater than 10°, the depth of the water ice features remains quite constant within a broad range of phase angle values.

On the relationship between atmospheric circulation and the fluctuations in the sea ice extents of the Bering and Okhotsk Seas

NASA Technical Reports Server (NTRS)

Cavalieri, D. J.; Parkinson, C. L.

1987-01-01

The influence of the hemispheric atmospheric circulation on the sea ice covers of the Bering Sea and the Sea of Okhotsk is examined using data obtained with the Nimbus 5 electrically scanning microwave radiometer for the four winters of the 1973-1976 period. The 3-day averaged sea ice extent data were used to establish periods for which there is an out-of-phase relationship between fluctuations of the two ice covers. A comparison of the sea-level atmospheric pressure field with the seasonal, interannual, and short-term sea ice fluctuations reveal an association between changes in the phase and the amplitude of the long waves in the atmosphere and advance and retreat of Arctic ice covers.

Plans and Preliminary Results of Fundamental Studies of Ice Crystal Icing Physics in the NASA Propulsion Systems Laboratory

NASA Technical Reports Server (NTRS)

Struk, Peter; Tsao, Jen-Ching; Bartkus, Tadas

2017-01-01

This paper describes plans and preliminary results for using the NASA Propulsion Systems Lab (PSL) to experimentally study the fundamental physics of ice-crystal ice accretion. NASA is evaluating whether this facility, in addition to full-engine and motor-driven-rig tests, can be used for more fundamental ice-accretion studies that simulate the different mixed-phase icing conditions along the core flow passage of a turbo-fan engine compressor. The data from such fundamental accretion tests will be used to help develop and validate models of the accretion process. This paper presents data from some preliminary testing performed in May 2015 which examined how a mixed-phase cloud could be generated at PSL using evaporative cooling in a warmer-than-freezing environment.

Plans and Preliminary Results of Fundamental Studies of Ice Crystal Icing Physics in the NASA Propulsion Systems Laboratory

NASA Technical Reports Server (NTRS)

Struk, Peter; Tsao, Jen-Ching; Bartkus, Tadas

2016-01-01

This presentation accompanies the paper titled Plans and Preliminary Results of Fundamental Studies of Ice Crystal Icing Physics in the NASA Propulsion Systems Laboratory. NASA is evaluating whether PSL, in addition to full-engine and motor-driven-rig tests, can be used for more fundamental ice-accretion studies that simulate the different mixed-phase icing conditions along the core flow passage of a turbo-fan engine compressor. The data from such fundamental accretion tests will be used to help develop and validate models of the accretion process. This presentation (and accompanying paper) presents data from some preliminary testing performed in May 2015 which examined how a mixed-phase cloud could be generated at PSL using evaporative cooling in a warmer-than-freezing environment.

Environmental stress speeds up DNA replication in Pseudomonas putida in chemostat cultivations.

PubMed

Lieder, Sarah; Jahn, Michael; Koepff, Joachim; Müller, Susann; Takors, Ralf

2016-01-01

Cellular response to different types of stress is the hallmark of the cell's strategy for survival. How organisms adjust their cell cycle dynamics to compensate for changes in environmental conditions is an important unanswered question in bacterial physiology. A cell using binary fission for reproduction passes through three stages during its cell cycle: a stage from cell birth to initiation of replication, a DNA replication phase and a period of cell division. We present a detailed analysis of durations of cell cycle phases, investigating their dynamics under environmental stress conditions. Applying continuous steady state cultivations (chemostats), the DNA content of a Pseudomonas putida KT2440 population was quantified with flow cytometry at distinct growth rates. Data-driven modeling revealed that under stress conditions, such as oxygen deprivation, solvent exposure and decreased iron availability, DNA replication was accelerated correlated to the severity of the imposed stress (up to 1.9-fold). Cells maintained constant growth rates by balancing the shortened replication phase with extended cell cycle phases before and after replication. Transcriptome data underpin the transcriptional upregulation of crucial genes of the replication machinery. Hence adaption of DNA replication speed appears to be an important strategy to withstand environmental stress. Copyright © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

The Development of an Advanced Anti-Icing/Deicing Capability for U.S. Army Helicopters. Volume 1. Design Criteria and Technology Considerations

DTIC Science & Technology

1975-11-01

EFFECT OF ICING CONDITIONS ON THE ZPG-2 AIRSHIP , NACA Technical Note 4220, Washington, D. C., April 1958. 28A * jb 7 -- ALBANYI I I,- 99 { T: FLINT...replicator (Figure 45) which featurek 35-mm slide frames coated with gelatine . Momentary exposure past an open slot leaves permanent footprints (cavi- ties...in the gelatine substance (Figure 46). In order to capture a true sample, the collection efficienuj of the collector (i.e., the fraction of 139 II r

Mixed-phase altocumulus clouds over Leipzig: Remote sensing measurements and spectral cloud microphysics simulations

NASA Astrophysics Data System (ADS)

Simmel, Martin; Bühl, Johannes; Ansmann, Albert; Tegen, Ina

2015-04-01

The present work combines remote sensing observations and detailed microphysics cloud modeling to investigate two altocumulus cloud cases observed over Leipzig, Germany. A suite of remote sensing instruments was able to detect primary ice at rather warm temperatures of -6°C. For comparison, a second mixed phase case at about -25°C is introduced. To further look into the details of cloud microphysical processes a simple dynamics model of the Asai-Kasahara type is combined with detailed spectral microphysics forming the model system AK-SPECS. Temperature and humidity profiles are taken either from observation (radiosonde) or GDAS reanalysis. Vertical velocities are prescribed to force the dynamics as well as main cloud features to be close to the observations. Subsequently, sensitivity studies with respect to dynamical as well as ice microphysical parameters are carried out with the aim to quantify the most important sensitivities for the cases investigated. For the cases selected, the liquid phase is mainly determined by the model dynamics (location and strength of vertical velocity) whereas the ice phase is much more sensitive to the microphysical parameters (ice nuclei (IN) number, ice particle shape). The choice of ice particle shape may induce large uncertainties which are in the same order as those for the temperature-dependent IN number distribution.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCoy, Daniel T.; Hartmann, Dennis L.; Zelinka, Mark D.

Increasing optical depth poleward of 45° is a robust response to warming in global climate models. Much of this cloud optical depth increase has been hypothesized to be due to transitions from ice-dominated to liquid-dominated mixed-phase cloud. In this study, the importance of liquid-ice partitioning for the optical depth feedback is quantified for 19 Coupled Model Intercomparison Project Phase 5 models. All models show a monotonic partitioning of ice and liquid as a function of temperature, but the temperature at which ice and liquid are equally mixed (the glaciation temperature) varies by as much as 40 K across models. Modelsmore » that have a higher glaciation temperature are found to have a smaller climatological liquid water path (LWP) and condensed water path and experience a larger increase in LWP as the climate warms. The ice-liquid partitioning curve of each model may be used to calculate the response of LWP to warming. It is found that the repartitioning between ice and liquid in a warming climate contributes at least 20% to 80% of the increase in LWP as the climate warms, depending on model. Intermodel differences in the climatological partitioning between ice and liquid are estimated to contribute at least 20% to the intermodel spread in the high-latitude LWP response in the mixed-phase region poleward of 45°S. As a result, it is hypothesized that a more thorough evaluation and constraint of global climate model mixed-phase cloud parameterizations and validation of the total condensate and ice-liquid apportionment against observations will yield a substantial reduction in model uncertainty in the high-latitude cloud response to warming.« less

Nanowire Ice of Phase VI and Distorted VII in Mesoporous Silica Nanotorus Superlattice

NASA Astrophysics Data System (ADS)

Zhu, Jinlong; Zhang, Jianzhong; Zhao, Yusheng

2014-03-01

The motivation of nano H2O realization and characterization is the highly polarized nature of H2O molecules and the spatial hydrogen bonded networks both in liquid and solid form. The hydrogen bonding character of water molecules results in a remarkably rich phase diagram in the pressure-temperature space. Water/Ice confined in nanochannels showed novel structures and properties as results of hydrophobic and hydrophilic interactions and hydrogen bonding interaction between water molecule and the surface of nanochannel. Studies on nano H2O can provide potential pathway to understand the complicated structure evolutions of ice in the P- T space, because the interplay between nano-confinement and strong intermolecular hydrogen interactions can lead to even richer ice structures which were not found in the none-confined bulk form. The high pressure experiment indicated that the pressure of nanowire ice VI and VII shifted up to 1.7 GPa and 2.5 GPa, and about ~ 0.65 GPa and 0.4 GPa higher than that of normal ice. The nano size effect and the strength of mesoporous silica nanotorus are responsible for the pressure shifts of ice phase regions. More pronounced, the cubic ice VII changed into a tetragonal distorted ``psuedocubic'' structure of the nanowire ice when confined in the mesoporous tubes. The degree of tetragonality increased with increasing pressure, which is resulted from the uniaxial pressure nanowire ice felt, and the anisotropic hydrogen bonding interactions including the H2O-H2O hydrogen bonds in the bulk of the ice and the H2O-silica -OH hydrogen bonds between the interface of nanowire ice and mesoporous silica. The experimental work has benefited from the use of CHESS at Cornell University, which is supported by the NSF award DMR-0936384.

Compatibility of amino acids in ice Ih and high-pressure phases: implications for the origin of life

NASA Astrophysics Data System (ADS)

Hao, J.; Giovenco, E.; Pedreira-Segade, U.; Montagnac, G.; Daniel, I.

2017-12-01

Icy environments may have been common on the early Earth due to the faint young sun. Previous studies have proposed that the formation of large icy bodies in the early ocean could concentrate the building blocks of life in eutectic fluids and therefore facilitate the polymerization of monomers. This hypothesis is based on the untested assumption that organic molecules are virtually incompatible in ice Ih. In this study, we conducted freezing experiments to explore the partitioning behavior of selected amino acids (glycine, L-alanine, L-proline, and L-phenylalanine) between ice Ih and aqueous solutions analogous to seawater. We let ice crystals grow slowly from a few seeds in equilibrium with the solution and used Raman spectroscopy to analyze in situ the relative concentrations of amino acids in the ice and aqueous solution. During freezing, there was no precipitation of amino acid crystals, indicating that the concentrations in solution never reached their solubility limit, even when the droplet was mostly frozen. Analyses of the Raman spectra of ice and eutectic solution showed that considerable amounts of amino acids existed in the ice phase with partition coefficients ranging between 0.2 and 0.5. This study also explored the partitioning of amino acids between other phases of ice (ice VI and ice VII) and solutions at high pressures and observed similar results. These observations implied little incompatibility of amino acids in ice during the freezing of the solutions, rendering the hypothesis of a cold origin of life unwarranted. However, incorporation into ice could significantly improve the efficiency of extraterrestrial transport of small organics. Therefore, this study supports the hypothesis of extraterrestrial delivery of organic molecules in the icy comets and asteroids to the primitive Earth as suggested by an increasing number of independent observations.

Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome

PubMed Central

Guilbaud, Guillaume; Rappailles, Aurélien; Baker, Antoine; Chen, Chun-Long; Arneodo, Alain; Goldar, Arach; d'Aubenton-Carafa, Yves; Thermes, Claude; Audit, Benjamin; Hyrien, Olivier

2011-01-01

Genome-wide replication timing studies have suggested that mammalian chromosomes consist of megabase-scale domains of coordinated origin firing separated by large originless transition regions. Here, we report a quantitative genome-wide analysis of DNA replication kinetics in several human cell types that contradicts this view. DNA combing in HeLa cells sorted into four temporal compartments of S phase shows that replication origins are spaced at 40 kb intervals and fire as small clusters whose synchrony increases during S phase and that replication fork velocity (mean 0.7 kb/min, maximum 2.0 kb/min) remains constant and narrowly distributed through S phase. However, multi-scale analysis of a genome-wide replication timing profile shows a broad distribution of replication timing gradients with practically no regions larger than 100 kb replicating at less than 2 kb/min. Therefore, HeLa cells lack large regions of unidirectional fork progression. Temporal transition regions are replicated by sequential activation of origins at a rate that increases during S phase and replication timing gradients are set by the delay and the spacing between successive origin firings rather than by the velocity of single forks. Activation of internal origins in a specific temporal transition region is directly demonstrated by DNA combing of the IGH locus in HeLa cells. Analysis of published origin maps in HeLa cells and published replication timing and DNA combing data in several other cell types corroborate these findings, with the interesting exception of embryonic stem cells where regions of unidirectional fork progression seem more abundant. These results can be explained if origins fire independently of each other but under the control of long-range chromatin structure, or if replication forks progressing from early origins stimulate initiation in nearby unreplicated DNA. These findings shed a new light on the replication timing program of mammalian genomes and provide a general model for their replication kinetics. PMID:22219720

Biology of Three ICE Families: SXT/R391, ICEBs1, and ICESt1/ICESt3.

PubMed

Carraro, Nicolas; Burrus, Vincent

2014-12-01

Integrative and Conjugative Elements (ICEs) are bacterial mobile genetic elements that play a key role in bacterial genomes dynamics and evolution. ICEs are widely distributed among virtually all bacterial genera. Recent extensive studies have unraveled their high diversity and complexity. The present review depicts the general conserved features of ICEs and describes more precisely three major families of ICEs that have been extensively studied in the past decade for their biology, their evolution and their impact on genomes dynamics. First, the large SXT/R391 family of ICEs disseminates antibiotic resistance genes and drives the exchange of mobilizable genomic islands (MGIs) between many enteric pathogens such as Vibrio cholerae. Second, ICEBs1 of Bacillus subtilis is the most well understood ICE of Gram-positive bacteria, notably regarding the regulation of its dissemination and its initially unforeseen extrachromosomal replication, which could be a common feature of ICEs of both Gram-positive and Gram-negative bacteria. Finally, ICESt1 and ICESt3 of Streptococcus thermophilus are the prototypes of a large family of ICEs widely distributed among various streptococci. These ICEs carry an original regulation module that associates regulators related to those of both SXT/R391 and ICEBs1. Study of ICESt1 and ICESt3 uncovered the cis-mobilization of related genomic islands (CIMEs) by a mechanism called accretion-mobilization, which likely represents a paradigm for the evolution of many ICEs and genomic islands. These three major families of ICEs give a glimpse about ICEs dynamics and their high impact on bacterial adaptation.

Pathways through equilibrated states with coexisting phases for gas hydrate formation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Malolepsza, Edyta; Keyes, Tom

Under ambient conditions, water freezes to either hexagonal ice or a hexagonal/cubic composite ice. The presence of hydrophobic guest molecules introduces a competing pathway: gas hydrate formation, with the guests in clathrate cages. Here, the pathways of the phase transitions are sought as sequences of states with coexisting phases, using a generalized replica exchange algorithm designed to sample them in equilibrium, avoiding nonequilibrium processes. For a dilute solution of methane in water under 200 atm, initializing the simulation with the full set of replicas leads to methane trapped in hexagonal/cubic ice, while gradually adding replicas with decreasing enthalpy produces themore » initial steps of hydrate growth. Once a small amount of hydrate is formed, water rearranges to form empty cages, eventually transforming the remainder of the system to metastable β ice, a scaffolding for hydrates. It is suggested that configurations with empty cages are reaction intermediates in hydrate formation when more guest molecules are available. Furthermore, free energy profiles show that methane acts as a catalyst reducing the barrier for β ice versus hexagonal/cubic ice formation.« less

Pathways through equilibrated states with coexisting phases for gas hydrate formation

DOE PAGES

Malolepsza, Edyta; Keyes, Tom

2015-12-01

Under ambient conditions, water freezes to either hexagonal ice or a hexagonal/cubic composite ice. The presence of hydrophobic guest molecules introduces a competing pathway: gas hydrate formation, with the guests in clathrate cages. Here, the pathways of the phase transitions are sought as sequences of states with coexisting phases, using a generalized replica exchange algorithm designed to sample them in equilibrium, avoiding nonequilibrium processes. For a dilute solution of methane in water under 200 atm, initializing the simulation with the full set of replicas leads to methane trapped in hexagonal/cubic ice, while gradually adding replicas with decreasing enthalpy produces themore » initial steps of hydrate growth. Once a small amount of hydrate is formed, water rearranges to form empty cages, eventually transforming the remainder of the system to metastable β ice, a scaffolding for hydrates. It is suggested that configurations with empty cages are reaction intermediates in hydrate formation when more guest molecules are available. Furthermore, free energy profiles show that methane acts as a catalyst reducing the barrier for β ice versus hexagonal/cubic ice formation.« less

Buckling failure of square ice-nanotube arrays constrained in graphene nanocapillaries

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, YinBo; Wang, FengChao, E-mail: wangfc@ustc.edu.cn; Wu, HengAn

Graphene confinement provides a new physical and mechanical environment with ultrahigh van der Waals pressure, resulting in new quasi-two-dimensional phases of few-layer ice. Polymorphic transition can occur in bilayer constrained water/ice system. Here, we perform a comprehensive study of the phase transition of AA-stacked bilayer water constrained within a graphene nanocapillary. The compression-limit and superheating-limit (phase) diagrams are obtained, based on the extensive molecular-dynamics simulations at numerous thermodynamic states. Liquid-to-solid, solid-to-solid, and solid-to-liquid-to-solid phase transitions are observed in the compression and superheating of bilayer water. Interestingly, there is a temperature threshold (∼275 K) in the compression-limit diagram, which indicates thatmore » the first-order and continuous-like phase transitions of bilayer water depend on the temperature. Two obviously different physical processes, compression and superheating, display similar structural evolution; that is, square ice-nanotube arrays (BL-VHDI) will bend first and then transform into bilayer triangular AA stacking ice (BL-AAI). The superheating limit of BL-VHDI exhibits local maxima, while that of BL-AAI increases monotonically. More importantly, from a mechanics point of view, we propose a novel mechanism of the transformation from BL-VHDI to BL-AAI, both for the compression and superheating limits. This structural transformation can be regarded as the “buckling failure” of the square-ice-nanotube columns, which is dominated by the lateral pressure.« less

14 CFR Appendix C to Part 25 - Appendix C to Part 25

Code of Federal Regulations, 2011 CFR

2011-01-01

... height of 1,500 feet above the level of the takeoff surface. Part II—Airframe Ice Accretions for Showing Compliance With Subpart B. (a) Ice accretions—General. The most critical ice accretion in terms of airplane... altitude). The ice accretions for each flight phase are defined as follows: (1) Takeoff ice is the most...

14 CFR Appendix C to Part 25 - Appendix C to Part 25

Code of Federal Regulations, 2013 CFR

2013-01-01

... height of 1,500 feet above the level of the takeoff surface. Part II—Airframe Ice Accretions for Showing Compliance With Subpart B. (a) Ice accretions—General. The most critical ice accretion in terms of airplane... altitude). The ice accretions for each flight phase are defined as follows: (1) Takeoff ice is the most...

CIRS-Observed Titan’s Stratospheric Ice Clouds Studied in the Laboratory

NASA Astrophysics Data System (ADS)

Nna-Mvondo, Delphine; Anderson, Carrie; Samuelson, Robert E.

2018-06-01

Stratospheric ice clouds have been repeatedly observed in Titan’s atmosphere by the Cassini Composite InfraRed Spectrometer (CIRS) since the Cassini spacecraft entered into orbit around Saturn in 2004. Most of these stratospheric ice clouds form as a result of vapor condensation, composed of a combination of pure and mixed nitriles and hydrocarbons. So far, the crystalline cyanoacetylene (HC3N) ν6 band at 506 cm‑1 and a co-condensed nitrile ice feature at 160 cm‑1, dominated by a mixture of HCN and HC3N ices, have been identified in the CIRS limb spectra. However, the presence of other observed stratospheric ice emission features, such as the ν8 band of dicyanoacetylene (C4N2) at 478 cm‑1 and the Haystack emission feature at 220 cm‑1, are puzzling since they have no associated observed vapor emission features. As well, recently, a massive stratospheric ice cloud system, the High-Altitude South Polar (HASP) cloud, was discovered in Titan’s early southern winter stratosphere with an emission feature near 210 cm‑1. We are investigating in laboratory these perplexing stratospheric ices to better understand their formation mechanisms, identify their chemical compositions, and determine their optical properties. We perform transmission spectroscopy of thin films of pure and mixed nitrile ices, as well as ices combined with hydrocarbons, from 50 cm‑1 to 11700 cm‑1, at deposition temperature 30 K - 150 K, using the SPECTRAL high-vacuum chamber at NASA GSFC. The spectral evolution with time and temperature is studied, the ice phase formation identified, and optical constants computed. The first surprising yet significant result reveals that the libration mode of HCN is drastically altered by the surrounding molecules when mixing occurs in a co-condensed phase. For propionitrile ice, we observe peculiar temperature and time-driven ice phase transitions, revealed by significant spectral changes until a stable crystalline phase is achieved. Comparing our laboratory spectra to the CIRS data, we found that a HCN-C6H6 mixed ice is a good match for the HASP cloud emission feature. We present a summary of our laboratory results, which provide crucial inputs to deepen our understanding of Titan's stratospheric chemistry.

SCF(FBXW7α) modulates the intra-S-phase DNA-damage checkpoint by regulating Polo like kinase-1 stability.

PubMed

Giráldez, Servando; Herrero-Ruiz, Joaquín; Mora-Santos, Mar; Japón, Miguel Á; Tortolero, Maria; Romero, Francisco

2014-06-30

The intra-S-checkpoint is essential to control cell progression through S phase under normal conditions and in response to replication stress. When DNA lesions are detected, replication fork progression is blocked allowing time for repair to avoid genomic instability and the risk of cancer. DNA replication initiates at many origins of replication in eukaryotic cells, where a series of proteins form pre-replicative complexes (pre-RCs) that are activated to become pre-initiation complexes and ensure a single round of replication in each cell cycle. PLK1 plays an important role in the regulation of DNA replication, contributing to the regulation of pre-RCs formation by phosphorylating several proteins, under both normal and stress conditions. Here we report that PLK1 is ubiquitinated and degraded by SCFFBXW7α/proteasome. Moreover, we identified a new Cdc4 phosphodegron in PLK1, conserved from yeast to humans, whose mutation prevents PLK1 destruction. We established that endogenous SCFFBXW7α degrades PLK1 in the G1 and S phases of an unperturbed cell cycle and in S phase following UV irradiation. Furthermore, we showed that FBXW7α overexpression or UV irradiation prevented the loading of proteins onto chromatin to form pre-RCs and, accordingly, reduced cell proliferation. We conclude that PLK1 degradation mediated by SCFFBXW7α modulates the intra-S-phase checkpoint.

SCFFBXW7α modulates the intra-S-phase DNA-damage checkpoint by regulating Polo like kinase-1 stability

PubMed Central

Giráldez, Servando; Herrero-Ruiz, Joaquín; Mora-Santos, Mar; Japón, Miguel Á.; Tortolero, Maria; Romero, Francisco

2014-01-01

The intra-S-checkpoint is essential to control cell progression through S phase under normal conditions and in response to replication stress. When DNA lesions are detected, replication fork progression is blocked allowing time for repair to avoid genomic instability and the risk of cancer. DNA replication initiates at many origins of replication in eukaryotic cells, where a series of proteins form pre-replicative complexes (pre-RCs) that are activated to become pre-initiation complexes and ensure a single round of replication in each cell cycle. PLK1 plays an important role in the regulation of DNA replication, contributing to the regulation of pre-RCs formation by phosphorylating several proteins, under both normal and stress conditions. Here we report that PLK1 is ubiquitinated and degraded by SCFFBXW7α/proteasome. Moreover, we identified a new Cdc4 phosphodegron in PLK1, conserved from yeast to humans, whose mutation prevents PLK1 destruction. We established that endogenous SCFFBXW7α degrades PLK1 in the G1 and S phases of an unperturbed cell cycle and in S phase following UV irradiation. Furthermore, we showed that FBXW7α overexpression or UV irradiation prevented the loading of proteins onto chromatin to form pre-RCs and, accordingly, reduced cell proliferation. We conclude that PLK1 degradation mediated by SCFFBXW7α modulates the intra-S-phase checkpoint. PMID:24970797

Cdc7 is required throughout the yeast S phase to activate replication origins.

PubMed

Donaldson, A D; Fangman, W L; Brewer, B J

1998-02-15

The long-standing conclusion that the Cdc7 kinase of Saccharomyces cerevisiae is required only to trigger S phase has been challenged by recent data that suggests it acts directly on individual replication origins. We tested the possibility that early- and late-activated origins have different requirements for Cdc7 activity. Cells carrying a cdc7(ts) allele were first arrested in G1 at the cdc7 block by incubation at 37 degrees C, and then were allowed to enter S phase by brief incubation at 23 degrees C. During the S phase, after return to 37 degrees C, early-firing replication origins were activated, but late origins failed to fire. Similarly, a plasmid with a late-activated origin was defective in replication. As a consequence of the origin activation defect, duplication of chromosomal sequences that are normally replicated from late origins was greatly delayed. Early-replicating regions of the genome duplicated at approximately their normal time. The requirements of early and late origins for Cdc7 appear to be temporally rather than quantitatively different, as reducing overall levels of Cdc7 by growth at semi-permissive temperature reduced activation at early and late origins approximately equally. Our results show that Cdc7 activates early and late origins separately, with late origins requiring the activity later in S phase to permit replication initiation.

Marine sources of ice nucleating particles: results from phytoplankton cultures and samples collected at sea

NASA Astrophysics Data System (ADS)

Wilbourn, E.; Thornton, D.; Brooks, S. D.; Graff, J.

2016-12-01

The role of marine aerosols as ice nucleating particles is currently poorly understood. Despite growing interest, there are remarkably few ice nucleation measurements on representative marine samples. Here we present results of heterogeneous ice nucleation from laboratory studies and in-situ air and sea water samples collected during NAAMES (North Atlantic Aerosol and Marine Ecosystems Study). Thalassiosira weissflogii (CCMP 1051) was grown under controlled conditions in batch cultures and the ice nucleating activity depended on the growth phase of the cultures. Immersion freezing temperatures of the lab-grown diatoms were determined daily using a custom ice nucleation apparatus cooled at a set rate. Our results show that the age of the culture had a significant impact on ice nucleation temperature, with samples in stationary phase causing nucleation at -19.9 °C, approximately nine degrees warmer than the freezing temperature during exponential growth phase. Field samples gathered during the NAAMES II cruise in May 2016 were also tested for ice nucleating ability. Two types of samples were gathered. Firstly, whole cells were fractionated by size from surface seawater using a BD Biosciences Influx Cell Sorter (BD BS ISD). Secondly, aerosols were generated using the SeaSweep and subsequently size-selected using a PIXE Cascade Impactor. Samples were tested for the presence of ice nucleating particles (INP) using the technique described above. There were significant differences in the freezing temperature of the different samples; of the three sample types the lab-grown cultures tested during stationary phase froze at the warmest temperatures, followed by the SeaSweep samples (-25.6 °C) and the size-fractionated cell samples (-31.3 °C). Differences in ice nucleation ability may be due to size differences between the INP, differences in chemical composition of the sample, or some combination of these two factors. Results will be presented and atmospheric implications discussed.

Simulation of the effects of aerosol on mixed-phase orographic clouds using the WRF model with a detailed bin microphysics scheme

NASA Astrophysics Data System (ADS)

Xiao, Hui; Yin, Yan; Jin, Lianji; Chen, Qian; Chen, Jinghua

2015-08-01

The Weather Research Forecast (WRF) mesoscale model coupled with a detailed bin microphysics scheme is used to investigate the impact of aerosol particles serving as cloud condensation nuclei and ice nuclei on orographic clouds and precipitation. A mixed-phase orographic cloud developed under two scenarios of aerosol (a typical continental background and a relatively polluted urban condition) and ice nuclei over an idealized mountain is simulated. The results show that, when the initial aerosol condition is changed from the relatively clean case to the polluted scenario, more droplets are activated, leading to a delay in precipitation, but the precipitation amount over the terrain is increased by about 10%. A detailed analysis of the microphysical processes indicates that ice-phase particles play an important role in cloud development, and their contribution to precipitation becomes more important with increasing aerosol particle concentrations. The growth of ice-phase particles through riming and Wegener-Bergeron-Findeisen regime is more effective under more polluted conditions, mainly due to the increased number of droplets with a diameter of 10-30 µm. Sensitivity tests also show that a tenfold increase in the concentration of ice crystals formed from ice nucleation leads to about 7% increase in precipitation, and the sensitivity of the precipitation to changes in the concentration and size distribution of aerosol particles is becoming less pronounced when the concentration of ice crystals is also increased.

ATR-like kinase Mec1 facilitates both chromatin accessibility at DNA replication forks and replication fork progression during replication stress

PubMed Central

Rodriguez, Jairo; Tsukiyama, Toshio

2013-01-01

Faithful DNA replication is essential for normal cell division and differentiation. In eukaryotic cells, DNA replication takes place on chromatin. This poses the critical question as to how DNA replication can progress through chromatin, which is inhibitory to all DNA-dependent processes. Here, we developed a novel genome-wide method to measure chromatin accessibility to micrococcal nuclease (MNase) that is normalized for nucleosome density, the NCAM (normalized chromatin accessibility to MNase) assay. This method enabled us to discover that chromatin accessibility increases specifically at and ahead of DNA replication forks in normal S phase and during replication stress. We further found that Mec1, a key regulatory ATR-like kinase in the S-phase checkpoint, is required for both normal chromatin accessibility around replication forks and replication fork rate during replication stress, revealing novel functions for the kinase in replication stress response. These results suggest a possibility that Mec1 may facilitate DNA replication fork progression during replication stress by increasing chromatin accessibility around replication forks. PMID:23307868

Chromosome Duplication in Saccharomyces cerevisiae

PubMed Central

Bell, Stephen P.; Labib, Karim

2016-01-01

The accurate and complete replication of genomic DNA is essential for all life. In eukaryotic cells, the assembly of the multi-enzyme replisomes that perform replication is divided into stages that occur at distinct phases of the cell cycle. Replicative DNA helicases are loaded around origins of DNA replication exclusively during G1 phase. The loaded helicases are then activated during S phase and associate with the replicative DNA polymerases and other accessory proteins. The function of the resulting replisomes is monitored by checkpoint proteins that protect arrested replisomes and inhibit new initiation when replication is inhibited. The replisome also coordinates nucleosome disassembly, assembly, and the establishment of sister chromatid cohesion. Finally, when two replisomes converge they are disassembled. Studies in Saccharomyces cerevisiae have led the way in our understanding of these processes. Here, we review our increasingly molecular understanding of these events and their regulation. PMID:27384026

DNA Replication Profiling Using Deep Sequencing.

PubMed

Saayman, Xanita; Ramos-Pérez, Cristina; Brown, Grant W

2018-01-01

Profiling of DNA replication during progression through S phase allows a quantitative snap-shot of replication origin usage and DNA replication fork progression. We present a method for using deep sequencing data to profile DNA replication in S. cerevisiae.

Particle Size Measurements From the First Fundamentals of Ice Crystal Icing Physics Test in the NASA Propulsion Systems Laboratory

NASA Technical Reports Server (NTRS)

King, Michael C.; Bachalo, William; Kurek, Andrzej

2017-01-01

This paper presents particle measurements by the Artium Technologies, Inc. Phase Doppler Interferometer and High Speed Imaging instruments from the first Fundamental Ice Crystal Icing Physics test conducted in the NASA Propulsion Systems Laboratory. The work focuses on humidity sweeps at a larger and a smaller median volumetric diameter. The particle size distribution, number density, and water content measured by the Phase Doppler Interferometer and High Speed Imaging instruments from the sweeps are presented and compared. The current capability for these two instruments to measure and discriminate ICI conditions is examined.

Particle Size Measurements from the first Fundamentals of Ice Crystal Icing Physics Test in the NASA Propulsion Systems Laboratory

NASA Technical Reports Server (NTRS)

King, Michael C.; Bachalo, William; Kurek, Andrzej

2017-01-01

This presentation shows particle measurements by the Artium Technologies, Inc. Phase Doppler Interferometer and High Speed Imaging instruments from the first Fundamental Ice Crystal Icing Physics test conducted in the NASA Propulsion Systems Laboratory. The work focuses on humidity sweeps at a larger and a smaller median volumetric diameter. The particle size distribution, number density, and water content measured by the Phase Doppler Interferometer and High Speed Imaging instruments from the sweeps are presented and compared. The current capability for these two instruments to measure and discriminate ICI conditions is examined.

Design of ice-free nanostructured surfaces based on repulsion of impacting water droplets.

PubMed

Mishchenko, Lidiya; Hatton, Benjamin; Bahadur, Vaibhav; Taylor, J Ashley; Krupenkin, Tom; Aizenberg, Joanna

2010-12-28

Materials that control ice accumulation are important to aircraft efficiency, highway and powerline maintenance, and building construction. Most current deicing systems include either physical or chemical removal of ice, both energy and resource-intensive. A more desirable approach would be to prevent ice formation rather than to fight its build-up. Much attention has been given recently to freezing of static water droplets resting on supercooled surfaces. Ice accretion, however, begins with the droplet/substrate collision followed by freezing. Here we focus on the behavior of dynamic droplets impacting supercooled nano- and microstructured surfaces. Detailed experimental analysis of the temperature-dependent droplet/surface interaction shows that highly ordered superhydrophobic materials can be designed to remain entirely ice-free down to ca. -25 to -30 °C, due to their ability to repel impacting water before ice nucleation occurs. Ice accumulated below these temperatures can be easily removed. Factors contributing to droplet retraction, pinning and freezing are addressed by combining classical nucleation theory with heat transfer and wetting dynamics, forming the foundation for the development of rationally designed ice-preventive materials. In particular, we emphasize the potential of hydrophobic polymeric coatings bearing closed-cell surface microstructures for their improved mechanical and pressure stability, amenability to facile replication and large-scale fabrication, and opportunities for greater tuning of their material and chemical properties.

Modeling Regolith Temperatures and Volatile Ice Processes (Invited)

NASA Astrophysics Data System (ADS)

Mellon, M. T.

2013-12-01

Surface and subsurface temperatures are an important tool for exploring the distribution and dynamics of volatile ices on and within planetary regoliths. I will review thermal-analysis approaches and recent applications in the studies of volatile ice processes. Numerical models of regolith temperatures allow us to examine the response of ices to periodic and secular changes in heat sources such as insolation. Used in conjunction with spatially and temporally distributed remotely-sensed temperatures, numerical models can: 1) constrain the stability and dynamics of volatile ices; 2) define the partitioning between phases of ice, gas, liquid, and adsorbate; and 3) in some instances be used to probe the distribution of ice hidden from view beneath the surface. The vapor pressure of volatile ices (such as water, carbon dioxide, and methane) depends exponentially on temperature. Small changes in temperature can result in transitions between stable phases. Cyclic temperatures and the propagation of thermal waves into the subsurface can produce a strong hysteresis in the population and partitioning of various phases (such as between ice, vapor, and adsorbate) and result in bulk transport. Condensation of ice will also have a pronounced effect on the thermal properties of otherwise loose particulate regolith. Cementing grains at their contacts through ice deposition will increase the thermal conductivity, and may enhance the stability of additional ice. Likewise sintering of grains within a predominantly icy regolith will increase the thermal conductivity. Subsurface layers that result from ice redistribution can be discriminated by remote sensing when combined with numerical modeling. Applications of these techniques include modeling of seasonal carbon dioxide frosts on Mars, predicting and interpreting the subsurface ice distribution on Mars and in Antarctica, and estimating the current depth of ice-rich permafrost on Mars. Additionally, understanding cold trapping ices in regions of the regolith of airless bodies, such as Mercury and the Moon, are aided by numerical modeling of regolith temperatures. Thermally driven sublimation of volatiles (water ice on Mars and more exotic species on icy moons in the outer solar system) can result in terrain degradation and collapse.

Operation of Kelvin Effect in the Activities of an Antifreeze Protein: A Molecular Dynamics Simulation Study.

PubMed

Midya, Uday Sankar; Bandyopadhyay, Sanjoy

2018-03-29

Ice growth and melting inhibition activities of antifreeze proteins (AFPs) are better explained by the adsorption-inhibition mechanism. Inhibition occurs as a result of the Kelvin effect induced by adsorbed protein molecules onto the surface of seed ice crystal. However, the Kelvin effect has not been explored by the state-of-the-art experimental techniques. In this work, atomistic molecular dynamics simulations have been carried out with Tenebrio molitor antifreeze protein ( TmAFP) placed at ice-water interface to probe the Kelvin effect in the mechanism of AFPs. Simulations show that, below equilibrium melting temperature, ice growth is inhibited through the convex ice-water interface formation toward the water phase and, above equilibrium melting temperature, ice melting is inhibited through the concave ice-water interface formation inward to ice phase. Simulations further reveal that the radius of curvature of the interface formed to stop the ice growth increases with decrease in the degree of supercooling. Our results are in qualitative agreement with the theoretical prediction of the Kelvin effect and thus reveal its operation in the activities of AFPs.

The structure of ice crystallized from supercooled water

NASA Astrophysics Data System (ADS)

Murray, Benjamin

2013-03-01

The freezing of water to ice is fundamentally important to fields as diverse as cloud formation to cryopreservation. Traditionally ice was thought to exist in two well-crystalline forms: stable hexagonal ice and metastable cubic ice. It has recently been shown, using X-ray diffraction data, that ice which crystallizes homogeneously and heterogeneously from supercooled water is neither of these phases. The resulting ice is disordered in one dimension and therefore possesses neither cubic nor hexagonal symmetry and is instead composed of randomly stacked layers of cubic and hexagonal sequences. We refer to this ice as stacking-disordered ice I (ice Isd) . This result is consistent with a number of computational studies of the crystallization of water. Review of the literature reveals that almost all ice that has been identified as cubic ice in previous diffraction studies and generated in a variety of ways was most likely stacking-disordered ice I with varying degrees of stacking disorder, which raises the question of whether cubic ice exists. New data will be presented which shows significant stacking disorder (or stacking faults on the order of 1 in every 100 layers of ice Ih) in droplets which froze heterogeneously as warm as 257 K. The identification of stacking-disordered ice from heterogeneous ice nucleation supports the hypothesis that the structure of ice that initially crystallises from supercooled water is stacking-disordered ice I, independent of nucleation mechanism, but this ice can relax to the stable hexagonal phase subject to the kinetics of recrystallization. The formation and persistence of stacking disordered ice in the Earth's atmosphere will also be discussed. Funded by the European Research Council (FP7, 240449 ICE)

Investigation of vapor-deposited amorphous ice and irradiated ice by molecular dynamics simulation.

PubMed

Guillot, Bertrand; Guissani, Yves

2004-03-01

With the purpose of clarifying a number of points raised in the experimental literature, we investigate by molecular dynamics simulation the thermodynamics, the structure and the vibrational properties of vapor-deposited amorphous ice (ASW) as well as the phase transformations experienced by crystalline and vitreous ice under ion bombardment. Concerning ASW, we have shown that by changing the conditions of the deposition process, it is possible to form either a nonmicroporous amorphous deposit whose density (approximately 1.0 g/cm3) is essentially invariant with the temperature of deposition, or a microporous sample whose density varies drastically upon temperature annealing. We find that ASW is energetically different from glassy water except at the glass transition temperature and above. Moreover, the molecular dynamics simulation shows no evidence for the formation of a high-density phase when depositing water molecules at very low temperature. In order to model the processing of interstellar ices by cosmic ray protons and heavy ions coming from the magnetospheric radiation environment around the giant planets, we bombarded samples of vitreous ice and cubic ice with 35 eV water molecules. After irradiation the recovered samples were found to be densified, the lower the temperature, the higher the density of the recovered sample. The analysis of the structure and vibrational properties of this new high-density phase of amorphous ice shows a close relationship with those of high-density amorphous ice obtained by pressure-induced amorphization. Copyright 2004 American Institute of Physics

Studies of cavitation and ice nucleation in 'doubly-metastable' water: time-lapse photography and neutron diffraction.

PubMed

Barrow, Matthew S; Williams, P Rhodri; Chan, Hoi-Houng; Dore, John C; Bellissent-Funel, Marie-Claire

2012-10-14

High-speed photographic studies and neutron diffraction measurements have been made of water under tension in a Berthelot tube. Liquid water was cooled below the normal ice-nucleation temperature and was in a doubly-metastable state prior to a collapse of the liquid state. This transition was accompanied by an exothermic heat release corresponding with the rapid production of a solid phase nucleated by cavitation. Photographic techniques have been used to observe the phase transition over short time scales in which a solidification front is observed to propagate through the sample. Significantly, other images at a shorter time interval reveal the prior formation of cavitation bubbles at the beginning of the process. The ice-nucleation process is explained in terms of a mechanism involving hydrodynamically-induced changes in tension in supercooled water in the near vicinity of an expanding cavitation bubble. Previous explanations have attributed the nucleation of the solid phase to the production of high positive pressures. Corresponding results are presented which show the initial neutron diffraction pattern after ice-nucleation. The observed pattern does not exhibit the usual crystalline pattern of hexagonal ice [I(h)] that is formed under ambient conditions, but indicates the presence of other ice forms. The composite features can be attributed to a mixture of amorphous ice, ice-I(h)/I(c) and the high-pressure form, ice-III, and the diffraction pattern continues to evolve over a time period of about an hour.

Longitudinal sound velocities, elastic anisotropy, and phase transition of high-pressure cubic H2O ice to 82 GPa

NASA Astrophysics Data System (ADS)

Kuriakose, Maju; Raetz, Samuel; Hu, Qing Miao; Nikitin, Sergey M.; Chigarev, Nikolay; Tournat, Vincent; Bulou, Alain; Lomonosov, Alexey; Djemia, Philippe; Gusev, Vitalyi E.; Zerr, Andreas

2017-10-01

Water ice is a molecular solid whose behavior under compression reveals the interplay of covalent bonding in molecules and forces acting between them. This interplay determines high-pressure phase transitions, the elastic and plastic behavior of H2O ice, which are the properties needed for modeling the convection and internal structure of the giant planets and moons of the solar system as well as H2O -rich exoplanets. We investigated experimentally and theoretically elastic properties and phase transitions of cubic H2O ice at room temperature and high pressures between 10 and 82 GPa. The time-domain Brillouin scattering (TDBS) technique was used to measure longitudinal sound velocities (VL) in polycrystalline ice samples compressed in a diamond anvil cell. The high spatial resolution of the TDBS technique revealed variations of VL caused by elastic anisotropy, allowing us to reliably determine the fastest and the slowest sound velocity in a single crystal of cubic H2O ice and thus to evaluate existing equations of state. Pressure dependencies of the single-crystal elastic moduli Ci j(P ) of cubic H2O ice to 82 GPa have been obtained which indicate its hardness and brittleness. These results were compared with ab initio calculations. It is suggested that the transition from molecular ice VII to ionic ice X occurs at much higher pressures than proposed earlier, probably above 80 GPa.

Evolution of Photometric and Polarimetric Phase Curves of Fine-Grained Water Ice Particles due to Grain Sintering

NASA Astrophysics Data System (ADS)

Jost, B.; Cerubini, R.; Poch, O.; Pommerol, A.; Thomas, N.

2018-06-01

Laboratory photometric and polarimetric phase curves of micrometer-sized water ice particles to elucidate the effect of grain sintering on scattering properties relevant for the analysis of potential plume deposition sites on icy satellites.

A New Approach to Modeling Densities and Equilibria of Ice and Gas Hydrate Phases

NASA Astrophysics Data System (ADS)

Zyvoloski, G.; Lucia, A.; Lewis, K. C.

2011-12-01

The Gibbs-Helmholtz Constrained (GHC) equation is a new cubic equation of state that was recently derived by Lucia (2010) and Lucia et al. (2011) by constraining the energy parameter in the Soave form of the Redlich-Kwong equation to satisfy the Gibbs-Helmholtz equation. The key attributes of the GHC equation are: 1) It is a multi-scale equation because it uses the internal energy of departure, UD, as a natural bridge between the molecular and bulk phase length scales. 2) It does not require acentric factors, volume translation, regression of parameters to experimental data, binary (kij) interaction parameters, or other forms of empirical correlations. 3) It is a predictive equation of state because it uses a database of values of UD determined from NTP Monte Carlo simulations. 4) It can readily account for differences in molecular size and shape. 5) It has been successfully applied to non-electrolyte mixtures as well as weak and strong aqueous electrolyte mixtures over wide ranges of temperature, pressure and composition to predict liquid density and phase equilibrium with up to four phases. 6) It has been extensively validated with experimental data. 7) The AAD% error between predicted and experimental liquid density is 1% while the AAD% error in phase equilibrium predictions is 2.5%. 8) It has been used successfully within the subsurface flow simulation program FEHM. In this work we describe recent extensions of the multi-scale predictive GHC equation to modeling the phase densities and equilibrium behavior of hexagonal ice and gas hydrates. In particular, we show that radial distribution functions, which can be determined by NTP Monte Carlo simulations, can be used to establish correct standard state fugacities of 1h ice and gas hydrates. From this, it is straightforward to determine both the phase density of ice or gas hydrates as well as any equilibrium involving ice and/or hydrate phases. A number of numerical results for mixtures of N2, O2, CH4, CO2, water, and NaCl in permafrost conditions are presented to illustrate the predictive capabilities of the multi-scale GHC equation. In particular, we show that the GHC equation correctly predicts 1) The density of 1h ice and methane hydrate to within 1%. 2) The melting curve for hexagonal ice. 3) The hydrate-gas phase co-existence curve. 4) Various phase equilibrium involving ice and hydrate phases. We also show that the GHC equation approach can be readily incorporated into subsurface flow simulation programs like FEHM to predict the behavior of permafrost and other reservoirs where ice and/or hydrates are present. Many geometric illustrations are used to elucidate key concepts. References A. Lucia, A Multi-Scale Gibbs Helmholtz Constrained Cubic Equation of State. J. Thermodynamics: Special Issue on Advances in Gas Hydrate Thermodynamics and Transport Properties. Available on-line [doi:10.1155/2010/238365]. A. Lucia, B.M. Bonk, A. Roy and R.R. Waterman, A Multi-Scale Framework for Multi-Phase Equilibrium Flash. Comput. Chem. Engng. In press.

A theoretical extension of the soil freezing curve paradigm

NASA Astrophysics Data System (ADS)

Amiri, Erfan A.; Craig, James R.; Kurylyk, Barret L.

2018-01-01

Numerical models of permafrost evolution in porous media typically rely upon a smooth continuous relation between pore ice saturation and sub-freezing temperature, rather than the abrupt phase change that occurs in pure media. Soil scientists have known for decades that this function, known as the soil freezing curve (SFC), is related to the soil water characteristic curve (SWCC) for unfrozen soils due to the analogous capillary and sorptive effects experienced during both soil freezing and drying. Herein we demonstrate that other factors beyond the SFC-SWCC relationship can influence the potential range over which pore water phase change occurs. In particular, we provide a theoretical extension for the functional form of the SFC based upon the presence of spatial heterogeneity in both soil thermal conductivity and the freezing point depression of water. We infer the functional form of the SFC from many abrupt-interface 1-D numerical simulations of heterogeneous systems with prescribed statistical distributions of water and soil properties. The proposed SFC paradigm extension has the appealing features that it (1) is determinable from measurable soil and water properties, (2) collapses into an abrupt phase transition for homogeneous media, (3) describes a wide range of heterogeneity within a single functional expression, and (4) replicates the observed hysteretic behavior of freeze-thaw cycles in soils.

Freshwater ice as habitat: partitioning of phytoplankton and bacteria between ice and water in central European reservoirs.

PubMed

McKay, Robert M L; Prášil, Ondrej; Pechar, Libor; Lawrenz, Evelyn; Rozmarynowycz, Mark J; Bullerjahn, George S

2015-12-01

Abundant phytoplankton and bacteria were identified by high-throughput 16S rRNA tag Illumina sequencing of samples from water and ice phases collected during winter at commercial fish ponds and a sand pit lake within the UNESCO Třeboň Basin Biosphere Reserve, Czech Republic. Bacterial reads were dominated by Proteobacteria and Bacteroidetes. Despite dominance by members of just two phyla, UniFrac principal coordinates analysis of the bacterial community separated the water community of Klec fish pond, as well as the ice-associated community of Klec-Sand Pit from other samples. Both phytoplankton and cyanobacteria were represented with hundreds of sequence reads per sample, a finding corroborated by microscopy. In particular, ice from Klec-Sand Pit contained high contributions from photoautotrophs accounting for 25% of total reads with reads dominated by single operational taxonomic units (OTUs) of the cyanobacterium Planktothrix sp. and two filamentous diatoms. Dominant OTUs recovered from ice were largely absent (< 0.01%) from underlying water suggestive of low floristic similarity of phytoplankton partitioned between these phases. Photosynthetic characterization of phototrophs resident in water and ice analysed by variable chlorophyll a fluorescence showed that communities from both phases were photosynthetically active, thus supporting ice as viable habitat for phytoplankton in freshwater lakes and reservoirs. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Understanding Rapid Changes in Phase Partitioning between Cloud Liquid and Ice in Stratiform Mixed-Phase Clouds: An Arctic Case Study

DOE PAGES

Kalesse, Heike; de Boer, Gijs; Solomon, Amy; ...

2016-11-23

Understanding phase transitions in mixed-phase clouds is of great importance because the hydrometeor phase controls the lifetime and radiative effects of clouds. These cloud radiative effects have a crucial impact on the surface energy budget and thus on the evolution of the ice cover, in high altitudes. For a springtime low-level mixed-phase stratiform cloud case from Barrow, Alaska, a unique combination of instruments and retrieval methods is combined with multiple modeling perspectives to determine key processes that control cloud phase partitioning. The interplay of local cloud-scale versus large-scale processes is considered. Rapid changes in phase partitioning were found to bemore » caused by several main factors. Some major influences were the large-scale advection of different air masses with different aerosol concentrations and humidity content, cloud-scale processes such as a change in the thermodynamical coupling state, and local-scale dynamics influencing the residence time of ice particles. Other factors such as radiative shielding by a cirrus and the influence of the solar cycle were found to only play a minor role for the specific case study (11–12 March 2013). Furthermore, for an even better understanding of cloud phase transitions, observations of key aerosol parameters such as profiles of cloud condensation nucleus and ice nucleus concentration are desirable.« less

Understanding Rapid Changes in Phase Partitioning between Cloud Liquid and Ice in Stratiform Mixed-Phase Clouds: An Arctic Case Study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kalesse, Heike; de Boer, Gijs; Solomon, Amy

Understanding phase transitions in mixed-phase clouds is of great importance because the hydrometeor phase controls the lifetime and radiative effects of clouds. These cloud radiative effects have a crucial impact on the surface energy budget and thus on the evolution of the ice cover, in high altitudes. For a springtime low-level mixed-phase stratiform cloud case from Barrow, Alaska, a unique combination of instruments and retrieval methods is combined with multiple modeling perspectives to determine key processes that control cloud phase partitioning. The interplay of local cloud-scale versus large-scale processes is considered. Rapid changes in phase partitioning were found to bemore » caused by several main factors. Some major influences were the large-scale advection of different air masses with different aerosol concentrations and humidity content, cloud-scale processes such as a change in the thermodynamical coupling state, and local-scale dynamics influencing the residence time of ice particles. Other factors such as radiative shielding by a cirrus and the influence of the solar cycle were found to only play a minor role for the specific case study (11–12 March 2013). Furthermore, for an even better understanding of cloud phase transitions, observations of key aerosol parameters such as profiles of cloud condensation nucleus and ice nucleus concentration are desirable.« less

Unveiling the pan-genome of the SXT/R391 family of ICEs: molecular characterisation of new variable regions of SXT/R391-like ICEs detected in Pseudoalteromonas sp. and Vibrio scophthalmi.

PubMed

Rodríguez-Blanco, Arturo; Lemos, Manuel L; Osorio, Carlos R

2016-08-01

Integrating conjugative elements (ICEs) of the SXT/R391 family have been identified in fish-isolated bacterial strains collected from marine aquaculture environments of the northwestern Iberian Peninsula. Here we analysed the variable regions of two ICEs, one preliminarily characterised in a previous study (ICEVscSpa3) and one newly identified (ICEPspSpa1). Bacterial strains harboring these ICEs were phylogenetically assigned to Vibrio scophthalmi and Pseudoalteromonas sp., thus constituting the first evidence of SXT/R391-like ICEs in the genus Pseudoalteromonas to date. Variable DNA regions, which confer element-specific properties to ICEs of this family, were characterised. Interestingly, the two ICEs contained 29 genes not found in variable DNA insertions of previously described ICEs. Most notably, variable gene content for ICEVscSpa3 showed similarity to genes potentially involved in housekeeping functions of replication, nucleotide metabolism and transcription. For these genes, closest homologues were found clustered in the genome of Pseudomonas psychrotolerans L19, suggesting a transfer as a block to ICEVscSpa3. Genes encoding antibiotic resistance, restriction modification systems and toxin/antitoxin systems were absent from hotspots of ICEVscSpa3. In contrast, the variable gene content of ICEPspSpa1 included genes involved in restriction/modification functions in two different hotspots and genes related to ICE maintenance. The present study unveils a relatively large number of novel genes in SXT/R391-ICEs, and demonstrates the major role of ICE elements as contributors to horizontal gene transfer.

Middle-to-late Holocene palaeoenvironmental reconstruction from the A294 ice-cave record (Central Pyrenees, northern Spain)

NASA Astrophysics Data System (ADS)

Sancho, Carlos; Belmonte, Ánchel; Bartolomé, Miguel; Moreno, Ana; Leunda, María; López-Martínez, Jerónimo

2018-02-01

Perennial ice deposits in caves represent unique, but underexplored, terrestrial sequences that potentially contain outstanding palaeoclimatic records. Here, we present a pioneer palaeoenvironmental study of an ice deposit preserved in a small sag-type cave (A294) in the Central Pyrenees (northern Iberian Peninsula). The 9.25-m-thick sequence, which is dated from 6100 ± 107 to 1888 ± 64 cal BP, represents the oldest known firn ice record worldwide. The stratigraphy (detrital layers, unconformities, and cross stratification), plant macrofossils, and isotopic signature (similarity between the ice linear distribution, δ2H = 7.83δ18O + 8.4, and the Global Meteoric Water Line) of the ice point to the diagenesis of snow introduced to the cave by winter snowstorms. Four phases of rapid ice accumulation (6100-5515, 4945-4250, 3810-3155, and 2450-1890 cal BP) are related to wetter and colder winters. Comparison of the isotopic composition (δ18O and deuterium excess) of the ice with other paleoclimate records show that both source effects and the North Atlantic Oscillation (NAO) mechanism exert a dominant influence on the ice cave record. The NAO signal may be a combination of source effects and rainfall amount. Three intervals with low ice accumulation occurred between the phases of rapid accumulation and were related to drier, and possibly warmer, winters. These centennial-scale episodes appear to be in-phase with regional arid events, as established from high altitude lacustrine records and can be correlated to global Rapid Climate Change events. The current warming trend has dramatically decreased the volume of the ice deposit in cave A294.

Dissipation in the deep interiors of Ganymede and Europa

NASA Astrophysics Data System (ADS)

Hussmann, Hauke; Shoji, Daigo; Steinbruegge, Gregor; Stark, Alexander; Sohl, Frank

2017-04-01

Jupiter's satellites are subject to strong tidal forces which result in variations of the gravitational potential and deformations of the satellites' surfaces on the diurnal tidal cycle. Tidal flexing in the deep interiors can be a significant heat source for the satellites' thermal-orbital evolution. Whereas typical structure models of Europa consist of a core, a silicate mantle, an ocean and an outer ice-I shell [1], pressures inside Ganymede are sufficient for high-pressure ice phases to occur between the silicate mantle and the ocean [2]. With current data it is unknown whether the deep interiors (i.e., Europa's silicate shell and Ganymede's silicate mantle and/or high-pressure ice layer) are dissipative. Other possibilities would be that the dissipation rates are in general very low (unlikely at least for Europa due to recent observations) or that dissipative processes are mainly occurring in the ice-I shell and/or ocean. Thus, for evaluations of the heating state of these satellites, it is important to measure the magnitude of the interior dissipation. However, observation of the interior layers such as high-pressure ice layers is more challenging than that of the surface ice-I layer. Here we suggest a method to constrain the dissipation states of the deep interiors of Ganymede and Europa by altimetry and gravity measurements from an orbiting or multi-flyby spacecraft. Tidal variations are generally described by the Love numbers k2 and h2 for the tide-induced potential variation due to internal mass redistribution and the radial surface displacement, respectively. The phase-lags of these complex numbers contain information about the rheological and dissipative states of the satellites. For the satellites we assume a decoupling of the outer ice-shell from the deep interior by a liquid subsurface water ocean. We show that, in this case, the phase-lag difference between the lags of k2 and h2 can provide information on the rheological and thermal state of the deep interiors if the viscosities of the deeper layers are small (the phase-lag difference is almost independent of the dissipation in the surface layer). In case of Ganymede, phase-lag differences can reach values of a few degrees for high-pressure ice viscosities of 1e13-1e14 Pa s (around the lower boundary at its melting temperature) and would indicate a highly dissipative state of the deep interior. In this case, in contrast to the phase lags itself, the phase-lag difference is dominated by dissipation in the high-pressure ice layer rather than dissipation within the ice-I shell. These phase lags would be detectable from spacecraft in orbit around the satellite [3]. For Europa the phase-lag difference could reach values exceeding 20 deg if the silicate mantle contains melt and phase-lag measurements could help distinguish between (1) a hot dissipative (melt-containing) silicate mantle which would in thermal equilibrium correspond to a very thin outer ice-I shell and (2) a cold deep interior implying that dissipation would mainly occur in a thick (several tens of km) outer ice-I shell. These measurements are highly relevant for ESA's Jupiter Icy Moons Explorer (JUICE) and NASA's Europa Multiple Flyby Mission, both targeted for the Jupiter system. References: [1] Schubert, G., F. Sohl and H. Hussmann 2009. Interior of Europa. In: Europa, (R.T. Pappalardo, W.B. McKinnon, K. Khurana, Eds.), University of Arizona Press, pp. 353 - 368. [2] Schubert G., J. D. Anderson, T. Spohn, and W. B. McKinnon 2004. Interior composition, structure, and dynamics of the Galilean satellites. In: F. Bagenal, T. E. Dowling, and W. B. McKinnon (eds.) Jupiter. The Planet, Satellites, and Magnetosphere, pp. 281-306. Cambridge University Press. [3] Hussmann, H., D. Shoji, G. Steinbrügge, A. Stark, F. Sohl 2016. Constraints on dissipation in the deep interiors of Ganymede and Europa from tidal phase-lags. Cel. Mech. Dyn. Astr. 126, 131 - 144.

Mutations in Replicative Stress Response Pathways Are Associated with S Phase-specific Defects in Nucleotide Excision Repair*

PubMed Central

Bélanger, François; Angers, Jean-Philippe; Fortier, Émile; Hammond-Martel, Ian; Costantino, Santiago; Drobetsky, Elliot; Wurtele, Hugo

2016-01-01

Nucleotide excision repair (NER) is a highly conserved pathway that removes helix-distorting DNA lesions induced by a plethora of mutagens, including UV light. Our laboratory previously demonstrated that human cells deficient in either ATM and Rad3-related (ATR) kinase or translesion DNA polymerase η (i.e. key proteins that promote the completion of DNA replication in response to UV-induced replicative stress) are characterized by profound inhibition of NER exclusively during S phase. Toward elucidating the mechanistic basis of this phenomenon, we developed a novel assay to quantify NER kinetics as a function of cell cycle in the model organism Saccharomyces cerevisiae. Using this assay, we demonstrate that in yeast, deficiency of the ATR homologue Mec1 or of any among several other proteins involved in the cellular response to replicative stress significantly abrogates NER uniquely during S phase. Moreover, initiation of DNA replication is required for manifestation of this defect, and S phase NER proficiency is correlated with the capacity of individual mutants to respond to replicative stress. Importantly, we demonstrate that partial depletion of Rfa1 recapitulates defective S phase-specific NER in wild type yeast; moreover, ectopic RPA1–3 overexpression rescues such deficiency in either ATR- or polymerase η-deficient human cells. Our results strongly suggest that reduction of NER capacity during periods of enhanced replicative stress, ostensibly caused by inordinate sequestration of RPA at stalled DNA replication forks, represents a conserved feature of the multifaceted eukaryotic DNA damage response. PMID:26578521

Spectral Modeling of Ground Ices Exposed by Trenching at the Phoenix Mars Landing Site

NASA Astrophysics Data System (ADS)

Cull, S.; Arvidson, R. E.; Blaney, D.; Morris, R. V.

2008-12-01

The Phoenix Lander, which landed on the northern plains of Mars on 25 May 2008, used its Robotic Arm (RA) to dig six trenches during its nominal 90-sol mission: Dodo-Goldilocks, Snow White, Cupboard, Neverland, Burn Alive, and Stone Soup. During excavation of the first five of these, the RA encountered hard material interpreted to be the ice table, and the Stereo Surface Imager (SSI) imaged the exposed materials using 15 filters spanning a wavelength range from 445 to 1001 nm. Materials exposed in the Dodo- Goldilocks and Snow White trenches are spectroscopically dissimilar: Dodo-Goldilocks hard material is brighter relative to the surrounding soil, and has a distinct downturn around 800 nm resulting from a dusty ice with low soil-to-ice ratio. Snow White hard stuff varies in brightness and spectral shape depending on the phase angle, with low-phase angle images showing dark material and higher phase angles showing more soil-like material. The Snow White material does not have the strong 800-nm downturn seen in Dodo- Goldilocks, because the soil-to-ice ratio is high as inferred by the rapid development of a sublimation lag; however, the albedo variation with phase angle could be due to strong forward-scattering at low phase angles, consistent with icy material. A modified Hapke model is used to estimate the relative abundances of water ice and dust in the Dodo- Goldilocks and Snow White materials, with dehydrated palagonite as an analogue for dust . The ice exposed at Dodo-Goldilocks must be relatively dust-free, since only a small amount of dust is needed to obscure water ice absorptions. In our modeling, we find that as little as 5 wt% 20-um dust is enough to completely mask the 1001 nm absorption in 1-mm grain size water ice. Dodo-Goldilocks spectra can have up to a 20% drop in reflectance from 800 nm to 1001 nm, which is best-matched in our Hapke model by water ice with path lengths on the order of 2-3 mm. The Snow White dark materials typically have a small downturn at approximately 900 nm, with a depth on the order of a few percent. This could be the result of finer-grained ice or a higher dust:ice ratio. Further modeling is needed to understand the behavior of the dark and bright material at the Snow White trench.

Onset of ice VII phase during ps laser pulse propagation through liquid water

NASA Astrophysics Data System (ADS)

Kumar, V. Rakesh; Kiran, P. Prem

2017-01-01

Water dominantly present in liquid state on earth gets transformed to crystalline polymorphs under different dynamic loading conditions. Out of different crystalline phases discovered till date, ice VII is observed to be stable over wide pressure (2-63 GPa) and temperature (>273 K) ranges. The formation of ice VII crystalline structure has been vastly reported during high pressure static compression using diamond anvil cell and propagation of high energy (>50 mJ/pulse) nanosecond laser pulse induced dynamic high pressures through liquid water. We present the onset of ice VII phase at low threshold of 2 mJ/pulse during 30 ps (532 nm, 10 Hz) laser pulse induced shock propagating through liquid water. Role of input pulse energy on the evolution of Stoke's and anti-Stoke's Raman shift of the dominant A1g mode of ice VII, filamentation, free-electrons, plasma shielding is presented. The H-bond network rearrangement, electron ion energy transfer time coinciding with the excitation pulse duration supported by the filamentation and plasma shielding of the ps laser pulses reduced the threshold of ice VII structure formation. Filamentation and the plasma shielding have shown the localized creation and sustenance of ice VII structure in liquid water over 3 mm length and 50 μm area of cross-section.

Laboratory IR Studies and Astrophysical Implications of C2H2-Containing Binary Ices

NASA Technical Reports Server (NTRS)

Knez, C.; Moore, M.; Ferrante, R.; Hudson, R.

2012-01-01

Studies of molecular hot cores and protostellar environments have shown that the observed abundance of gas-phase acetylene (C2H2) cannot be matched by chemical models without the inclusion of C2H2 molecules subliming from icy grain mantles. Searches for infrared (IR) spectral features of solid-phase acetylene are under way, but few laboratory reference spectra of C2H2 in icy mixtures, which are needed for spectral fits to observational data, have been published. Here, we report a systematic study of the IR spectra of condensed-phase pure acetylene and acetylene in ices dominated by carbon monoxide (CO), carbon dioxide (CO2), methane (CH4), and water (H2O). We present new spectral data for these ices, including band positions and intrinsic band strengths. For each ice mixture and concentration, we also explore the dependence of acetylene's nu5-band position (743 cm-1, 13.46 micrometers) and FWHM on temperature. Our results show that the nu5 feature is much more cleanly resolved in ices dominated by non-polar and low-polarity molecules, specifically CO, CO2, and CH4, than in mixtures dominated by H2O-ice. We compare our laboratory ice spectra with observations of a quiescent region in Serpens.

Theory of amorphous ices.

PubMed

Limmer, David T; Chandler, David

2014-07-01

We derive a phase diagram for amorphous solids and liquid supercooled water and explain why the amorphous solids of water exist in several different forms. Application of large-deviation theory allows us to prepare such phases in computer simulations. Along with nonequilibrium transitions between the ergodic liquid and two distinct amorphous solids, we establish coexistence between these two amorphous solids. The phase diagram we predict includes a nonequilibrium triple point where two amorphous phases and the liquid coexist. Whereas the amorphous solids are long-lived and slowly aging glasses, their melting can lead quickly to the formation of crystalline ice. Further, melting of the higher density amorphous solid at low pressures takes place in steps, transitioning to the lower-density glass before accessing a nonequilibrium liquid from which ice coarsens.

Regulation of DNA Replication Timing on Human Chromosome by a Cell-Type Specific DNA Binding Protein SATB1

PubMed Central

Oda, Masako; Kanoh, Yutaka; Watanabe, Yoshihisa; Masai, Hisao

2012-01-01

Background Replication timing of metazoan DNA during S-phase may be determined by many factors including chromosome structures, nuclear positioning, patterns of histone modifications, and transcriptional activity. It may be determined by Mb-domain structures, termed as “replication domains”, and recent findings indicate that replication timing is under developmental and cell type-specific regulation. Methodology/Principal Findings We examined replication timing on the human 5q23/31 3.5-Mb segment in T cells and non-T cells. We used two independent methods to determine replication timing. One is quantification of nascent replicating DNA in cell cycle-fractionated stage-specific S phase populations. The other is FISH analyses of replication foci. Although the locations of early- and late-replicating domains were common between the two cell lines, the timing transition region (TTR) between early and late domains were offset by 200-kb. We show that Special AT-rich sequence Binding protein 1 (SATB1), specifically expressed in T-cells, binds to the early domain immediately adjacent to TTR and delays the replication timing of the TTR. Measurement of the chromosome copy number along the TTR during synchronized S phase suggests that the fork movement may be slowed down by SATB1. Conclusions Our results reveal a novel role of SATB1 in cell type-specific regulation of replication timing along the chromosome. PMID:22879953

Regulation of DNA replication timing on human chromosome by a cell-type specific DNA binding protein SATB1.

PubMed

Oda, Masako; Kanoh, Yutaka; Watanabe, Yoshihisa; Masai, Hisao

2012-01-01

Replication timing of metazoan DNA during S-phase may be determined by many factors including chromosome structures, nuclear positioning, patterns of histone modifications, and transcriptional activity. It may be determined by Mb-domain structures, termed as "replication domains", and recent findings indicate that replication timing is under developmental and cell type-specific regulation. We examined replication timing on the human 5q23/31 3.5-Mb segment in T cells and non-T cells. We used two independent methods to determine replication timing. One is quantification of nascent replicating DNA in cell cycle-fractionated stage-specific S phase populations. The other is FISH analyses of replication foci. Although the locations of early- and late-replicating domains were common between the two cell lines, the timing transition region (TTR) between early and late domains were offset by 200-kb. We show that Special AT-rich sequence Binding protein 1 (SATB1), specifically expressed in T-cells, binds to the early domain immediately adjacent to TTR and delays the replication timing of the TTR. Measurement of the chromosome copy number along the TTR during synchronized S phase suggests that the fork movement may be slowed down by SATB1. Our results reveal a novel role of SATB1 in cell type-specific regulation of replication timing along the chromosome.

Observing Physical and Biological Drivers of pH and O2 in a Seasonal Ice Zone in the Ross Sea Using Profiling Float Data

NASA Astrophysics Data System (ADS)

Briggs, E.; Martz, T. R.; Talley, L. D.; Mazloff, M. R.

2015-12-01

Ice cover has strong influence over gas exchange, vertical stability, and biological production which are critical to understanding the Southern Ocean's central role in oceanic biogeochemical cycling and heat and carbon uptake under a changing climate. However the relative influence of physical versus biological processes in this hard-to-study region is poorly understood due to limited observations. Here we present new findings from a profiling float equipped with biogeochemical sensors in the seasonal ice zone of the Ross Sea capturing, for the first time, under-ice pH profile data over a two year timespan from 2014 to the present. The relative influence of physical (e.g. vertical mixing and air-sea gas exchange) and biological (e.g. production and respiration) drivers of pH and O2 within the mixed layer are explored during the phases of ice formation, ice cover, and ice melt over the two seasonal cycles. During the austral fall just prior to and during ice formation, O2 increases as expected due to surface-layer undersaturation and enhanced gas exchange. A small increase in pH is also observed during this phase, but without a biological signal in accompanying profiling float chlorophyll data, which goes against common reasoning from both a biological and physical standpoint. During the phase of ice cover, gas exchange is inhibited and a clear respiration signal is observed in pH and O2 data from which respiration rates are calculated. In the austral spring, ice melt gives rise to substantial ice edge phytoplankton blooms indicated by O2 supersaturation and corresponding increase in pH and large chlorophyll signal. The influence of the duration of ice cover and mixed layer depth on the magnitude of the ice edge blooms is explored between the two seasonal cycles.

Imaging radar studies of polar ice

NASA Technical Reports Server (NTRS)

Carsey, Frank

1993-01-01

A vugraph format presentation is given. The following topics are discussed: scientific overview, radar data opportunities, sea ice investigations, and ice sheet investigations. The Sea Ice Scientific Objectives are as follows: (1) to estimate globally the surface brine generation, heat flux, and fresh water advection (as ice); (2) to monitor phasing of seasonal melt and freeze events and accurately estimate melt and growth rates; and (3) to develop improved treatment of momentum transfer and ice mechanics in coupled air-sea-ice models.

Numerical Modeling of Hailstorms and Hailstone Growth. Part III: Simulation of an Alberta Hailstorm--Natural and Seeded Cases.

NASA Astrophysics Data System (ADS)

Farley, Richard D.

1987-07-01

This paper reports on simulations of a multicellular hailstorm case observed during the 1983 Alberta Hail Project. The field operations on that day concentrated on two successive feeder cells which were subjected to controlled seeding experiments. The fist of these cells received the placebo treatment and the second was seeded with dry ice. The principal tool of this study is a modified version of the two-dimensional, time dependent hail category model described in Part I of this series of papers. It is with this model that hail growth processes are investigated, including the simulated effects of cloud seeding techniques as practiced in Alberta.The model simulation of the natural case produces a very good replication of the observed storm, particularly the placebo feeder cell. This is evidenced, in particular, by the high degree of fidelity of the observed and modeled radar reflectivity in terms of magnitudes, structure, and evolution. The character of the hailfall at the surface and the scale of the storm are captured nicely by the model, although cloud-top heights are generally too high, particularly for the mature storm system.Seeding experiments similar to those conducted in the field have also been simulated. These involve seeding the feeder cell early in its active development phase with dry ice (CO2) or silver iodide (AgI) introduced near cloud top. The model simulations of these seeded cases capture some of the observed seeding signatures detected by radar and aircraft. In these model experiments, CO2 seeding produced a stronger response than AgI seeding relative to inhibiting hail formation. For both seeded cases, production of precipitating ice was initially enhanced by the seeding, but retarded slightly in the later stages, the net result being modest increases in surface rainfall, with hail reduced slightly. In general, the model simulations support several subhypotheses of the operational strategy of the Alberta Research Council regarding the earlier formation of ice, snow, and graupel due to seeding.

New Equations for the Sublimation Pressure and Melting Pressure of H2O Ice Ih

NASA Astrophysics Data System (ADS)

Wagner, Wolfgang; Riethmann, Thomas; Feistel, Rainer; Harvey, Allan H.

2011-12-01

New reference equations, adopted by the International Association for the Properties of Water and Steam (IAPWS), are presented for the sublimation pressure and melting pressure of ice Ih as a function of temperature. These equations are based on input values derived from the phase-equilibrium condition between the IAPWS-95 scientific standard for thermodynamic properties of fluid H2O and the equation of state of H2O ice Ih adopted by IAPWS in 2006, making them thermodynamically consistent with the bulk-phase properties. Compared to the previous IAPWS formulations, which were empirical fits to experimental data, the new equations have significantly less uncertainty. The sublimation-pressure equation covers the temperature range from 50 K to the vapor-liquid-solid triple point at 273.16 K. The ice Ih melting-pressure equation describes the entire melting curve from 273.16 K to the ice Ih-ice III-liquid triple point at 251.165 K. For completeness, we also give the IAPWS melting-pressure equation for ice III, which is slightly adjusted to agree with the ice Ih melting-pressure equation at the corresponding triple point, and the unchanged IAPWS melting-pressure equations for ice V, ice VI, and ice VII.

Understanding rapid changes in phase partitioning between cloud liquid and ice in an Arctic stratiform mixed-phase cloud

NASA Astrophysics Data System (ADS)

Kalesse, Heike; de Boer, Gijs; Solomon, Amy; Oue, Mariko; Ahlgrimm, Maike; Zhang, Damao; Shupe, Matthew; Luke, Edward; Protat, Alain

2016-04-01

In the Arctic, a region particularly sensitive to climate change, mixed-phase clouds occur as persistent single or multiple stratiform layers. For many climate models, the correct partitioning of hydrometeor phase (liquid vs. ice) remains a challenge. However, this phase partitioning plays an important role for precipitation processes and the radiation budget. To better understand the partitioning of phase in Arctic clouds, observations using a combination of surface-based remote sensors are useful. In this study, the focus is on a persistent low-level single-layer stratiform Arctic mixed-phase cloud observed during March 11-12, 2013 at the US Department of Energy's (DOE) Atmospheric Radiation Measurement (ARM) North Slope of Alaska (NSA) permanent site in Barrow, Alaska. This case is of particular interest due to two significant shifts in observed precipitation intensity over a 36 hour period. For the first 12 hours of this case, the observed liquid portion of the cloud cover featured a stable cloud top height with a gradually descending liquid cloud base and continuous ice precipitation. Then the ice precipitation intensity significantly decreased. A second decrease in ice precipitation intensity was observed a few hours later coinciding with the advection of a cirrus over the site. Through analysis of the data collected by extensive ground-based remote-sensing and in-situ observing systems as well as Nested Weather Research and Forecasting (WRF) simulations and ECMWF radiation scheme simulations, we try to shed light on the processes responsible for these rapid changes in precipitation rates. A variety of parameters such as the evolution of the internal dynamics and microphysics of the low-level mixed-phase cloud and the influence of the cirrus cloud are evaluated.

Understanding decomposition and encapsulation energies of structure I and II clathrate hydrates

NASA Astrophysics Data System (ADS)

Alavi, Saman; Ohmura, Ryo

2016-10-01

When compressed with water or ice under high pressure and low temperature conditions, some gases form solid gas hydrate inclusion compounds which have higher melting points than ice under those pressures. In this work, we study the balance of the guest-water and water-water interaction energies that lead to the formation of the clathrate hydrate phases. In particular, molecular dynamics simulations with accurate water potentials are used to study the energetics of the formation of structure I (sI) and II (sII) clathrate hydrates of methane, ethane, and propane. The dissociation enthalpy of the clathrate hydrate phases, the encapsulation enthalpy of methane, ethane, and propane guests in the corresponding phases, and the average bonding enthalpy of water molecules are calculated and compared with accurate calorimetric measurements and previous classical and quantum mechanical calculations, when available. The encapsulation energies of methane, ethane, and propane guests stabilize the small and large sI and sII hydrate cages, with the larger molecules giving larger encapsulation energies. The average water-water interactions are weakened in the sI and sII phases compared to ice. The relative magnitudes of the van der Waals potential energy in ice and the hydrate phases are similar, but in the ice phase, the electrostatic interactions are stronger. The stabilizing guest-water "hydrophobic" interactions compensate for the weaker water-water interactions and stabilize the hydrate phases. A number of common assumptions regarding the guest-cage water interactions are used in the van der Waals-Platteeuw statistical mechanical theory to predict the clathrate hydrate phase stability under different pressure-temperature conditions. The present calculations show that some of these assumptions may not accurately reflect the physical nature of the interactions between guest molecules and the lattice waters.

Understanding decomposition and encapsulation energies of structure I and II clathrate hydrates.

PubMed

Alavi, Saman; Ohmura, Ryo

2016-10-21

When compressed with water or ice under high pressure and low temperature conditions, some gases form solid gas hydrate inclusion compounds which have higher melting points than ice under those pressures. In this work, we study the balance of the guest-water and water-water interaction energies that lead to the formation of the clathrate hydrate phases. In particular, molecular dynamics simulations with accurate water potentials are used to study the energetics of the formation of structure I (sI) and II (sII) clathrate hydrates of methane, ethane, and propane. The dissociation enthalpy of the clathrate hydrate phases, the encapsulation enthalpy of methane, ethane, and propane guests in the corresponding phases, and the average bonding enthalpy of water molecules are calculated and compared with accurate calorimetric measurements and previous classical and quantum mechanical calculations, when available. The encapsulation energies of methane, ethane, and propane guests stabilize the small and large sI and sII hydrate cages, with the larger molecules giving larger encapsulation energies. The average water-water interactions are weakened in the sI and sII phases compared to ice. The relative magnitudes of the van der Waals potential energy in ice and the hydrate phases are similar, but in the ice phase, the electrostatic interactions are stronger. The stabilizing guest-water "hydrophobic" interactions compensate for the weaker water-water interactions and stabilize the hydrate phases. A number of common assumptions regarding the guest-cage water interactions are used in the van der Waals-Platteeuw statistical mechanical theory to predict the clathrate hydrate phase stability under different pressure-temperature conditions. The present calculations show that some of these assumptions may not accurately reflect the physical nature of the interactions between guest molecules and the lattice waters.

Distinct Contributions of Ice Nucleation, Large-Scale Environment, and Shallow Cumulus Detrainment to Cloud Phase Partitioning With NCAR CAM5

DOE PAGES

Wang, Yong; Zhang, Damao; Liu, Xiaohong; ...

2018-01-06

Mixed-phase clouds containing both liquid droplets and ice particles occur frequently at high latitudes and in the midlatitude storm track regions. Simulations of the cloud phase partitioning between liquid and ice hydrometeors in state-of-the-art global climate models are still associated with large biases. For this study, the phase partitioning in terms of liquid mass phase ratio (MPR liq, defined as the ratio of liquid mass to total condensed water mass) simulated from the NCAR Community Atmosphere Model version 5 (CAM5) is evaluated against the observational data from A-Train satellite remote sensors. Modeled MPR liq is significantly lower than observations onmore » the global scale, especially in the Southern Hemisphere (e.g., Southern Ocean and the Antarctic). Sensitivity tests with CAM5 are conducted to investigate the distinct contributions of heterogeneous ice nucleation, shallow cumulus detrainment, and large-scale environment (e.g., winds, temperature, and water vapor) to the low MPR liq biases. Our results show that an aerosol-aware ice nucleation parameterization increases the MPR liq especially at temperatures colder than -20°C and significantly improves the model agreements with observations in the Polar regions in summer. The decrease of threshold temperature over which all detrained cloud water is liquid from 268 to 253 K enhances the MPR liq and improves the MPR liq mostly over the Southern Ocean. By constraining water vapor in CAM5 toward reanalysis, modeled low biases in many geographical regions are largely reduced through a significant decrease of cloud ice mass mixing ratio.« less

Distinct Contributions of Ice Nucleation, Large-Scale Environment, and Shallow Cumulus Detrainment to Cloud Phase Partitioning With NCAR CAM5

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Yong; Zhang, Damao; Liu, Xiaohong

Mixed-phase clouds containing both liquid droplets and ice particles occur frequently at high latitudes and in the midlatitude storm track regions. Simulations of the cloud phase partitioning between liquid and ice hydrometeors in state-of-the-art global climate models are still associated with large biases. For this study, the phase partitioning in terms of liquid mass phase ratio (MPR liq, defined as the ratio of liquid mass to total condensed water mass) simulated from the NCAR Community Atmosphere Model version 5 (CAM5) is evaluated against the observational data from A-Train satellite remote sensors. Modeled MPR liq is significantly lower than observations onmore » the global scale, especially in the Southern Hemisphere (e.g., Southern Ocean and the Antarctic). Sensitivity tests with CAM5 are conducted to investigate the distinct contributions of heterogeneous ice nucleation, shallow cumulus detrainment, and large-scale environment (e.g., winds, temperature, and water vapor) to the low MPR liq biases. Our results show that an aerosol-aware ice nucleation parameterization increases the MPR liq especially at temperatures colder than -20°C and significantly improves the model agreements with observations in the Polar regions in summer. The decrease of threshold temperature over which all detrained cloud water is liquid from 268 to 253 K enhances the MPR liq and improves the MPR liq mostly over the Southern Ocean. By constraining water vapor in CAM5 toward reanalysis, modeled low biases in many geographical regions are largely reduced through a significant decrease of cloud ice mass mixing ratio.« less

Distinct Contributions of Ice Nucleation, Large-Scale Environment, and Shallow Cumulus Detrainment to Cloud Phase Partitioning With NCAR CAM5

NASA Astrophysics Data System (ADS)

Wang, Yong; Zhang, Damao; Liu, Xiaohong; Wang, Zhien

2018-01-01

Mixed-phase clouds containing both liquid droplets and ice particles occur frequently at high latitudes and in the midlatitude storm track regions. Simulations of the cloud phase partitioning between liquid and ice hydrometeors in state-of-the-art global climate models are still associated with large biases. In this study, the phase partitioning in terms of liquid mass phase ratio (MPRliq, defined as the ratio of liquid mass to total condensed water mass) simulated from the NCAR Community Atmosphere Model version 5 (CAM5) is evaluated against the observational data from A-Train satellite remote sensors. Modeled MPRliq is significantly lower than observations on the global scale, especially in the Southern Hemisphere (e.g., Southern Ocean and the Antarctic). Sensitivity tests with CAM5 are conducted to investigate the distinct contributions of heterogeneous ice nucleation, shallow cumulus detrainment, and large-scale environment (e.g., winds, temperature, and water vapor) to the low MPRliq biases. Our results show that an aerosol-aware ice nucleation parameterization increases the MPRliq especially at temperatures colder than -20°C and significantly improves the model agreements with observations in the Polar regions in summer. The decrease of threshold temperature over which all detrained cloud water is liquid from 268 to 253 K enhances the MPRliq and improves the MPRliq mostly over the Southern Ocean. By constraining water vapor in CAM5 toward reanalysis, modeled low biases in many geographical regions are largely reduced through a significant decrease of cloud ice mass mixing ratio.

Condensed-phase biogenic-anthropogenic interactions with implications for cold cloud formation

DOE PAGES

Charnawskas, Joseph C.; Alpert, Peter A.; Lambe, Andrew; ...

2017-01-24

Anthropogenic and biogenic gas emissions contribute to the formation of secondary organic aerosol (SOA). When present, soot particles from fossil-fuel combustion can acquire a coating of SOA. We investigate SOA-soot biogenic-anthropogenic interactions and their impact on ice nucleation in relation to the particles’ organic phase state. SOA particles were generated from the OH oxidation of naphthalene, α-pinene, longifolene, or isoprene, with or without presence of sulfate or soot particles. Corresponding particle glass transition (T g) and full deliquescence relative humidity (FDRH) were estimated by a numerical diffusion model. Longifolene SOA particles are solid-like and all biogenic SOA sulfate mixtures exhibitmore » a core-shell configuration (i.e. a sulfate-rich core coated with SOA). Biogenic SOA with or without sulfate formed ice at conditions expected for homogeneous ice nucleation in agreement with respective T g and FDRH. α-pinene SOA coated soot particles nucleated ice above the homogeneous freezing temperature with soot acting as ice nuclei (IN). At lower temperatures the α-pinene SOA coating can be semisolid inducing ice nucleation. Naphthalene SOA coated soot particles acted as IN above and below the homogeneous freezing limit, which can be explained by the presence of a highly viscous SOA phase. Our results suggest that biogenic SOA does not play a significant role in mixed-phase cloud formation and the presence of sulfate further renders this even less likely. Furthermore, anthropogenic SOA may have an enhancing effect on cloud glaciation under mixed-phase and cirrus cloud conditions compared to biogenic SOA that dominate during preindustrial times or in pristine areas.« less

Diffusion model validation and interpretation of stable isotopes in river and lake ice

USGS Publications Warehouse

Ferrick, M.G.; Calkins, D.J.; Perron, N.M.; Cragin, J.H.; Kendall, C.

2002-01-01

The stable isotope stratigraphy of river- and lake-ice archives winter hydroclimatic conditions, and can potentially be used to identify changing water sources or to provide important insights into ice formation processes and growth rates. However, accurate interpretations rely on known isotopic fractionation during ice growth. A one-dimensional diffusion model of the liquid boundary layer adjacent to an advancing solid interface, originally developed to simulate solute rejection by growing crystals, has been used without verification to describe non-equilibrium fractionation during congelation ice growth. Results are not in agreement, suggesting the presence of important uncertainties. In this paper we seek validation of the diffusion model for this application using large-scale laboratory experiments with controlled freezing rates and frequent sampling. We obtained consistent, almost constant, isotopic boundary layer thicknesses over a representative range of ice growth rates on both quiescent and well-mixed water. With the 18O boundary layer thickness from the laboratory, the model successfully quantified reduced river-ice growth rates relative to those of a nearby lake. These results were more representative and easier to obtain than those of a conventional thermal ice-growth model. This diffusion model validation and boundary layer thickness determination provide a powerful tool for interpreting the stable isotope stratigraphy of floating ice. The laboratory experiment also replicated successive fractionation events in response to a freeze-thaw-refreeze cycle, providing a mechanism for apparent ice fractionation that exceeds equilibrium. Analysis of the composition of snow ice and frazil ice in river and lake cores indicated surprising similarities between these ice forms. Published in 2002 by John Wiley & Sons, Ltd.

BmICE-2 is a novel pro-apoptotic caspase involved in apoptosis in the silkworm, Bombyx mori.

PubMed

Yi, Hua-Shan; Pan, Cai-Xia; Pan, Chun; Song, Juan; Hu, Yan-Fen; Wang, La; Pan, Min-Hui; Lu, Cheng

2014-02-28

In this study we identified a potential pro-apoptotic caspase gene, Bombyx mori(B. mori)ICE-2 (BmICE-2) which encoded a polypeptide of 284 amino acid residues, including a (169)QACRG(173) sequence which surrounded the catalytic site and contained a p20 and a p10 domain. BmICE-2 expressed in Escherichia coli (E. coli) exhibited high proteolytic activity for the synthetic human initiator caspase-9 substrates Ac-LEHD-pNA, but little activity towards the effector caspase-3 substrates Ac-DEVD-pNA. When BmICE-2 was transiently expressed in BmN-SWU1 silkworm B. mori cells, we found that the high proteolytic activity for Ac-LEHD-pNA triggered caspase-3-like protease activity resulting in spontaneous cleavage and apoptosis in these cells. This effect was not replicated in Spodoptera frugiperda 9 cells. In addition, spontaneous cleavage of endogenous BmICE-2 in BmN-SWU1 cells could be induced by actinomycin D. These results suggest that BmICE-2 may be a novel pro-apoptotic gene with caspase-9 activity which is involved apoptotic processes in BmN-SWU1 silkworm B. mori cells. Copyright © 2014 Elsevier Inc. All rights reserved.

Integrative and conjugative elements and their hosts: composition, distribution and organization.

PubMed

Cury, Jean; Touchon, Marie; Rocha, Eduardo P C

2017-09-06

Conjugation of single-stranded DNA drives horizontal gene transfer between bacteria and was widely studied in conjugative plasmids. The organization and function of integrative and conjugative elements (ICE), even if they are more abundant, was only studied in a few model systems. Comparative genomics of ICE has been precluded by the difficulty in finding and delimiting these elements. Here, we present the results of a method that circumvents these problems by requiring only the identification of the conjugation genes and the species' pan-genome. We delimited 200 ICEs and this allowed the first large-scale characterization of these elements. We quantified the presence in ICEs of a wide set of functions associated with the biology of mobile genetic elements, including some that are typically associated with plasmids, such as partition and replication. Protein sequence similarity networks and phylogenetic analyses revealed that ICEs are structured in functional modules. Integrases and conjugation systems have different evolutionary histories, even if the gene repertoires of ICEs can be grouped in function of conjugation types. Our characterization of the composition and organization of ICEs paves the way for future functional and evolutionary analyses of their cargo genes, composed of a majority of unknown function genes. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Quantum Spin Ice under a [111] Magnetic Field: From Pyrochlore to Kagome

NASA Astrophysics Data System (ADS)

Bojesen, Troels Arnfred; Onoda, Shigeki

2017-12-01

Quantum spin ice, modeled for magnetic rare-earth pyrochlores, has attracted great interest for hosting a U(1) quantum spin liquid, which involves spin-ice monopoles as gapped deconfined spinons, as well as gapless excitations analogous to photons. However, the global phase diagram under a [111] magnetic field remains open. Here we uncover by means of unbiased quantum Monte Carlo simulations that a supersolid of monopoles, showing both a superfluidity and a partial ionization, intervenes the kagome spin ice and a fully ionized monopole insulator, in contrast to classical spin ice where a direct discontinuous phase transition takes place. We also show that on cooling, kagome spin ice evolves towards a valence-bond solid similar to what appears in the associated kagome lattice model [S. V. Isakov et al., Phys. Rev. Lett. 97, 147202 (2006), 10.1103/PhysRevLett.97.147202]. Possible relevance to experiments is discussed.

Onset of ice VII phase during ps laser pulse propagation through liquid water

NASA Astrophysics Data System (ADS)

Paturi, Prem Kiran; Vaddapally, Rakesh Kumar; Acrhem Team

2015-06-01

Water dominantly present in liquid state on earth gets transformed to crystalline polymorphs under different dynamic loading conditions. Out of 15 different crystalline phases discovered till date, ice VII is observed to be stable over wide pressure (2-63 GPa) and temperature (>273 K) ranges. We present the onset of ice VII phase at low threshold of 2 mJ/pulse during 30 ps (532 nm, 10 Hz) laser pulse induced shock propagating through liquid water. Role of input pulse energy on the evolution of Stoke's and anti-Stoke's Raman shift of the dominant A1g mode of ice VII, filamentation, free-electrons, plasma shielding is presented. The H-bond network rearrangement, electron ion energy transfer time coinciding with the excitation pulse duration supported by the filamentation and plasma shielding of the ps laser pulses reduced the threshold of ice VII structure formation. Filamentation and the plasma shielding have shown the localized creation and sustenance of ice VII structure in liquid water over 3 mm length and 50 μm area of cross-section. The work is supported by Defence Research and Developement Organization, India through Grants-in-Aid Program.

Comparison of measured and computed phase functions of individual tropospheric ice crystals

NASA Astrophysics Data System (ADS)

Stegmann, Patrick G.; Tropea, Cameron; Järvinen, Emma; Schnaiter, Martin

2016-07-01

Airplanes passing the incuda (lat. anvils) regions of tropical cumulonimbi-clouds are at risk of suffering an engine power-loss event and engine damage due to ice ingestion (Mason et al., 2006 [1]). Research in this field relies on optical measurement methods to characterize ice crystals; however the design and implementation of such methods presently suffer from the lack of reliable and efficient means of predicting the light scattering from ice crystals. The nascent discipline of direct measurement of phase functions of ice crystals in conjunction with particle imaging and forward modelling through geometrical optics derivative- and Transition matrix-codes for the first time allow us to obtain a deeper understanding of the optical properties of real tropospheric ice crystals. In this manuscript, a sample phase function obtained via the Particle Habit Imaging and Polar Scattering (PHIPS) probe during a measurement campaign in flight over Brazil will be compared to three different light scattering codes. This includes a newly developed first order geometrical optics code taking into account the influence of the Gaussian beam illumination used in the PHIPS device, as well as the reference ray tracing code of Macke and the T-matrix code of Kahnert.

Grain Surface Chemistry and the Composition of Interstellar Ices

NASA Technical Reports Server (NTRS)

Tielens, A. G. G. M.

2006-01-01

Submicron sized dust grains are an important component of the interstellar medium. In particular they provide surface where active chemistry can take place. At the low temperatures (-10 K) of the interstellar medium, colliding gas phase species will stick, diffuse, react, and form an icy mantle on these dust grains. This talk will review the principles of grain surface chemistry and delineate important grain surface routes, focusing on reactions involving H, D, and O among each other and with molecules such as CO. Interstellar ice mantles can be studied through the fundamental vibrations of molecular species in the mid-infrared spectra of sources embedded in or located behind dense molecular clouds. Analysis of this type of data has provided a complex view of the composition of these ices and the processes involved. Specifically, besides grain surface chemistry, the composition of interstellar ices is also affected by thermal processing due to nearby newly formed stars. This leads to segregation between different ice components as well as outgassing. The latter results in the formation of a so-called Hot Core region with a gas phase composition dominated by evaporated mantle species. Studies of such regions provide thus a different view on the ice composition and the chemical processes involved. Interstellar ices can also be processed by FUV photons and high energy cosmic ray ions. Cosmic ray processing likely dominates the return of accreted species to the gas phase where further gas phase reactions can take place. These different chemical routes towards molecular complexity in molecular clouds and particularly regions of star formation will be discussed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Charnawskas, Joseph C.; Alpert, Peter A.; Lambe, Andrew T.

Anthropogenic and biogenic gas emissions contribute to the formation of secondary organic aerosol (SOA). When present, soot particles from fossil fuel combustion can acquire a coating of SOA. We investigate SOA–soot biogenic–anthropogenic interactions and their impact on ice nucleation in relation to the particles’ organic phase state. SOA particles were generated from the OH oxidation of naphthalene, α-pinene, longifolene, or isoprene, with or without the presence of sulfate or soot particles. Corresponding particle glass transition (T g) and full deliquescence relative humidity (FDRH) were estimated using a numerical diffusion model. Longifolene SOA particles are solid-like and all biogenic SOA sulfatemore » mixtures exhibit a core–shell configuration (i.e.a sulfate-rich core coated with SOA). Biogenic SOA with or without sulfate formed ice at conditions expected for homogeneous ice nucleation, in agreement with respectiveT gand FDRH. α-pinene SOA coated soot particles nucleated ice above the homogeneous freezing temperature with soot acting as ice nuclei (IN). At lower temperatures the α-pinene SOA coating can be semisolid, inducing ice nucleation. Naphthalene SOA coated soot particles acted as ice nuclei above and below the homogeneous freezing limit, which can be explained by the presence of a highly viscous SOA phase. Our results suggest that biogenic SOA does not play a significant role in mixed-phase cloud formation and the presence of sulfate renders this even less likely. However, anthropogenic SOA may have an enhancing effect on cloud glaciation under mixed-phase and cirrus cloud conditions compared to biogenic SOA that dominate during pre-industrial times or in pristine areas.« less

Role of replication protein A as sensor in activation of the S-phase checkpoint in Xenopus egg extracts

PubMed Central

Recolin, Bénédicte; Van Der Laan, Siem; Maiorano, Domenico

2012-01-01

Uncoupling between DNA polymerases and helicase activities at replication forks, induced by diverse DNA lesions or replication inhibitors, generate long stretches of primed single-stranded DNA that is implicated in activation of the S-phase checkpoint. It is currently unclear whether nucleation of the essential replication factor RPA onto this substrate stimulates the ATR-dependent checkpoint response independently of its role in DNA synthesis. Using Xenopus egg extracts to investigate the role of RPA recruitment at uncoupled forks in checkpoint activation we have surprisingly found that in conditions in which DNA synthesis occurs, RPA accumulation at forks stalled by either replication stress or UV irradiation is dispensable for Chk1 phosphorylation. In contrast, when both replication fork uncoupling and RPA hyperloading are suppressed, Chk1 phosphorylation is inhibited. Moreover, we show that extracts containing reduced levels of RPA accumulate ssDNA and induce spontaneous, caffeine-sensitive, Chk1 phosphorylation in S-phase. These results strongly suggest that disturbance of enzymatic activities of replication forks, rather than RPA hyperloading at stalled forks, is a critical determinant of ATR activation. PMID:22187152

Wind tunnel tests of rotor blade sections with replications of ice formations accreted in hover

NASA Technical Reports Server (NTRS)

Lee, J. D.; Berger, J. H.; Mcdonald, T. J.

1986-01-01

Full scale reproductions of ice accretions molded during the documentation of a hover test program were fabricated by means of epoxy castings and used for a wind tunnel test program. Surface static pressure distributions were recorded and used to evaluate lift and pitching moment increments while drag was determined by wake surveys. Through the range of the tests, corresponding to those conditions encountered in hover and in flat pitch, integration of the pressure distributions showed negligible changes in lift and in pitching moment, but the drag was significantly increased.

Experimental Analysis of Sublimation Dynamics for Buried Glacier Ice in Beacon Valley, Antarctica

NASA Astrophysics Data System (ADS)

Ehrenfeucht, S.; Dennis, D. P.; Marchant, D. R.

2017-12-01

The age of the oldest known buried ice in Beacon Valley, McMurdo Dry Valleys (MDV) Antarctica is a topic of active debate due to its implications for the stability of the East Antarctic Ice Sheet. Published age estimates range from as young as 300 ka to as old as 8.1 Ma. In the upland MDV, ablation occurs predominantly via sublimation. The relict ice in question (ancient ice from Taylor Glacier) lies buried beneath a thin ( 30-70 cm) layer of sublimation till, which forms as a lag deposit as underlying debris-rich ice sublimes. As the ice sublimates, the debris held within the ice accumulates slowly on the surface, creating a porous boundary between the buried-ice surface and the atmosphere, which in turn influences gas exchange between the ice and the atmosphere. Additionally, englacial debris adds several salt species that are ultimately concentrated on the ice surface. It is well documented the rate of ice sublimation varies as a function of overlying till thickness. However, the rate-limiting dynamics under varying environmental conditions, including the threshold thicknesses at which sublimation is strongly retarded, are not yet defined. To better understand the relationships between sublimation rate, till thickness, and long-term surface evolution, we build on previous studies by Lamp and Marchant (2017) and evaluate the role of till thickness as a control on ice loss in an environmental chamber capable of replicating the extreme cold desert conditions observed in the MDV. Previous work has shown that this relationship exhibits exponential decay behavior, with sublimation rate significantly dampened under less than 10 cm of till. In our experiments we pay particular attention to the effect of the first several cm of till in order to quantify the dynamics that govern the transition from bare ice to debris-covered ice. We also examine this transition for various forms of glacier ice, including ice with various salt species.

The Effects of Grain Size and Temperature Distributions on the Formation of Interstellar Ice Mantles

NASA Astrophysics Data System (ADS)

Pauly, Tyler; Garrod, Robin T.

2016-02-01

Computational models of interstellar gas-grain chemistry have historically adopted a single dust-grain size of 0.1 micron, assumed to be representative of the size distribution present in the interstellar medium. Here, we investigate the effects of a broad grain-size distribution on the chemistry of dust-grain surfaces and the subsequent build-up of molecular ices on the grains, using a three-phase gas-grain chemical model of a quiescent dark cloud. We include an explicit treatment of the grain temperatures, governed both by the visual extinction of the cloud and the size of each individual grain-size population. We find that the temperature difference plays a significant role in determining the total bulk ice composition across the grain-size distribution, while the effects of geometrical differences between size populations appear marginal. We also consider collapse from a diffuse to a dark cloud, allowing dust temperatures to fall. Under the initial diffuse conditions, small grains are too warm to promote grain-mantle build-up, with most ices forming on the mid-sized grains. As collapse proceeds, the more abundant, smallest grains cool and become the dominant ice carriers; the large population of small grains means that this ice is distributed across many grains, with perhaps no more than 40 monolayers of ice each (versus several hundred assuming a single grain size). This effect may be important for the subsequent processing and desorption of the ice during the hot-core phase of star formation, exposing a significant proportion of the ice to the gas phase, increasing the importance of ice-surface chemistry and surface-gas interactions.

Arctic Sea Ice Classification and Mapping for Surface Albedo Parameterization in Sea Ice Modeling

NASA Astrophysics Data System (ADS)

Nghiem, S. V.; Clemente-Colón, P.; Perovich, D. K.; Polashenski, C.; Simpson, W. R.; Rigor, I. G.; Woods, J. E.; Nguyen, D. T.; Neumann, G.

2016-12-01

A regime shift of Arctic sea ice from predominantly perennial sea ice (multi-year ice or MYI) to seasonal sea ice (first-year ice or FYI) has occurred in recent decades. This shift has profoundly altered the proportional composition of different sea ice classes and the surface albedo distribution pertaining to each sea ice class. Such changes impacts physical, chemical, and biological processes in the Arctic atmosphere-ice-ocean system. The drastic changes upset the traditional geophysical representation of surface albedo of the Arctic sea ice cover in current models. A critical science issue is that these profound changes must be rigorously and systematically observed and characterized to enable a transformative re-parameterization of key model inputs, such as ice surface albedo, to ice-ocean-atmosphere climate modeling in order to obtain re-analyses that accurately reproduce Arctic changes and also to improve sea ice and weather forecast models. Addressing this challenge is a strategy identified by the National Research Council study on "Seasonal to Decadal Predictions of Arctic Sea Ice - Challenges and Strategies" to replicate the new Arctic reality. We review results of albedo characteristics associated with different sea ice classes such as FYI and MYI. Then we demonstrate the capability for sea ice classification and mapping using algorithms developed by the Jet Propulsion Laboratory and by the U.S. National Ice Center for use with multi-sourced satellite radar data at L, C, and Ku bands. Results obtained with independent algorithms for different radar frequencies consistently identify sea ice classes and thereby cross-verify the sea ice classification methods. Moreover, field observations obtained from buoy webcams and along an extensive trek across Elson Lagoon and a sector of the Beaufort Sea during the BRomine, Ozone, and Mercury EXperiment (BROMEX) in March 2012 are used to validate satellite products of sea ice classes. This research enables the mapping of Arctic sea ice classes over multiple decades using multiple satellite radar datasets with both coarse resolution for synoptic scales and high resolution for local and regional scales, which are crucial for realistic surface albedo parameterization to significantly advance sea ice forecast and projection models.

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program

PubMed Central

Foti, Rossana; Gnan, Stefano; Cornacchia, Daniela; Dileep, Vishnu; Bulut-Karslioglu, Aydan; Diehl, Sarah; Buness, Andreas; Klein, Felix A.; Huber, Wolfgang; Johnstone, Ewan; Loos, Remco; Bertone, Paul; Gilbert, David M.; Manke, Thomas; Jenuwein, Thomas; Buonomo, Sara C.B.

2016-01-01

Summary DNA replication is temporally and spatially organized in all eukaryotes, yet the molecular control and biological function of the replication-timing program are unclear. Rif1 is required for normal genome-wide regulation of replication timing, but its molecular function is poorly understood. Here we show that in mouse embryonic stem cells, Rif1 coats late-replicating domains and, with Lamin B1, identifies most of the late-replicating genome. Rif1 is an essential determinant of replication timing of non-Lamin B1-bound late domains. We further demonstrate that Rif1 defines and restricts the interactions between replication-timing domains during the G1 phase, thereby revealing a function of Rif1 as organizer of nuclear architecture. Rif1 loss affects both number and replication-timing specificity of the interactions between replication-timing domains. In addition, during the S phase, Rif1 ensures that replication of interacting domains is temporally coordinated. In summary, our study identifies Rif1 as the molecular link between nuclear architecture and replication-timing establishment in mammals. PMID:26725008

Deglaciation-induced uplift and seasonal variations patterns of bedrock displacement in Greenland ice sheet margin observed from GPS, GRACE and InSAR

NASA Astrophysics Data System (ADS)

Lu, Q.; Amelung, F.; Wdowinski, S.

2017-12-01

The Greenland ice sheet is rapidly shrinking with the fastest retreat and thinning occurring at the ice sheet margin and near the outlet glaciers. The changes of the ice mass cause an elastic response of the bedrock. Theoretically, ice mass loss during the summer melting season is associated with bedrock uplift, whereas increasing ice mass during the winter months is associated with bedrock subsidence. Here we examine the annual changes of the vertical displacements measured at 37 GPS stations and compare the results with Greenland drainage basins' gravity from GRACE. We use both Fourier Series (FS) analysis and Cubic Smoothing Spline (CSS) method to estimate the phases and amplitudes of seasonal variations. Both methods show significant differences seasonal behaviors in southern and northern Greenland. The average amplitude of bedrock displacements (3.29±0.02mm) in south Greenland is about 2 times larger than the north (1.65±0.02mm). The phase of bedrock maximum uplift (November) is considerably consistent with the time of minimum ice mass load in south Greenland (October). However, the phase of bedrock maximum uplift in north Greenland (February) is 4 months later than the minimum ice mass load in north Greenland basins (October). In addition, we present ground deformation near several famous glaciers in Greenland such as Petermann glacier and Jakobshavn glacier. We process InSAR data from TerraSAR-X and Sentinel satellite, based on small baseline interferograms. We observed rapid deglaciation-induced uplift and seasonal variations on naked bedrock near the glacier ice margin.

Intercomparison of Large-Eddy Simulations of Arctic Mixed-Phase Clouds: Importance of Ice Size Distribution Assumptions

NASA Technical Reports Server (NTRS)

Ovchinnikov, Mikhail; Ackerman, Andrew S.; Avramov, Alexander; Cheng, Anning; Fan, Jiwen; Fridlind, Ann M.; Ghan, Steven; Harrington, Jerry; Hoose, Corinna; Korolev, Alexei;

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pauly, Tyler; Garrod, Robin T., E-mail: tap74@cornell.edu

Computational models of interstellar gas-grain chemistry have historically adopted a single dust-grain size of 0.1 micron, assumed to be representative of the size distribution present in the interstellar medium. Here, we investigate the effects of a broad grain-size distribution on the chemistry of dust-grain surfaces and the subsequent build-up of molecular ices on the grains, using a three-phase gas-grain chemical model of a quiescent dark cloud. We include an explicit treatment of the grain temperatures, governed both by the visual extinction of the cloud and the size of each individual grain-size population. We find that the temperature difference plays amore » significant role in determining the total bulk ice composition across the grain-size distribution, while the effects of geometrical differences between size populations appear marginal. We also consider collapse from a diffuse to a dark cloud, allowing dust temperatures to fall. Under the initial diffuse conditions, small grains are too warm to promote grain-mantle build-up, with most ices forming on the mid-sized grains. As collapse proceeds, the more abundant, smallest grains cool and become the dominant ice carriers; the large population of small grains means that this ice is distributed across many grains, with perhaps no more than 40 monolayers of ice each (versus several hundred assuming a single grain size). This effect may be important for the subsequent processing and desorption of the ice during the hot-core phase of star formation, exposing a significant proportion of the ice to the gas phase, increasing the importance of ice-surface chemistry and surface–gas interactions.« less

Spin Ice

NASA Astrophysics Data System (ADS)

Bramwell, Steven T.; Gingras, Michel J. P.; Holdsworth, Peter C. W.

2013-03-01

Pauling's model of hydrogen disorder in water ice represents the prototype of a frustrated system. Over the years it has spawned several analogous models, including Anderson's model antiferromagnet and the statistical "vertex" models. Spin Ice is a sixteen vertex model of "ferromagnetic frustration" that is approximated by real materials, most notably the rare earth pyrochlores Ho2Ti2O7, Dy2Ti2O7 and Ho2Sn2O7. These "spin ice materials" have the Pauling zero point entropy and in all respects represent almost ideal realisations of Pauling's model. They provide experimentalists with unprecedented access to a wide variety of novel magnetic states and phase transitions that are located in different regions of the field-temperature phase diagram. They afford theoreticians the opportunity to explore many new features of the magnetic interactions and statistical mechanics of frustrated systems. This chapter is a comprehensive review of the physics -- both experimental and theoretical -- of spin ice. It starts with a discussion of the historic problem of water ice and its relation to spin ice and other frustrated magnets. The properties of spin ice are then discussed in three sections that deal with the zero field spin ice state, the numerous field-induced states (including the recently identified "kagomé ice") and the magnetic dynamics. Some materials related to spin ice are briefly described and the chapter is concluded with a short summary of spin ice physics.

In-lake carbon dioxide concentration patterns in four distinct phases in relation to ice cover dynamics

NASA Astrophysics Data System (ADS)

Denfeld, B. A.; Wallin, M.; Sahlee, E.; Sobek, S.; Kokic, J.; Chmiel, H.; Weyhenmeyer, G. A.

2014-12-01

Global carbon dioxide (CO2) emission estimates from inland waters include emissions at ice melt that are based on simple assumptions rather than evidence. To account for CO2 accumulation below ice and potential emissions into the atmosphere at ice melt we combined continuous CO2 concentrations with spatial CO2 sampling in an ice-covered small boreal lake. From early ice cover to ice melt, our continuous surface water CO2 concentration measurements at 2 m depth showed a temporal development in four distinct phases: In early winter, CO2 accumulated continuously below ice, most likely due to biological in-lake and catchment inputs. Thereafter, in late winter, CO2 concentrations remained rather constant below ice, as catchment inputs were minimized and vertical mixing of hypolimnetic water was cut off. As ice melt began, surface water CO2 concentrations were rapidly changing, showing two distinct peaks, the first one reflecting horizontal mixing of CO2 from surface and catchment waters, the second one reflecting deep water mixing. We detected that 83% of the CO2 accumulated in the water during ice cover left the lake at ice melt which corresponded to one third of the total CO2 storage. Our results imply that CO2 emissions at ice melt must be accurately integrated into annual CO2 emission estimates from inland waters. If up-scaling approaches assume that CO2 accumulates linearly under ice and at ice melt all CO2 accumulated during ice cover period leaves the lake again, present estimates may overestimate CO2 emissions from small ice covered lakes. Likewise, neglecting CO2 spring outbursts will result in an underestimation of CO2 emissions from small ice covered lakes.

Mars Aerosol Studies with the MGS TES Emission Phase Function Observations: Opacities, Particle Sizes, and Ice Cloud Types

NASA Astrophysics Data System (ADS)

Wolff, M. J.; Clancy, R. T.; Pitman, K. M.; Christensen, P. R.; Whitney, B. A.

2001-11-01

A full Mars year (1999-2001) of emission phase function (EPF) observations from Mars Global Surveyor (MGS) Thermal Emission Spectrometer (TES) provide the most complete study of Mars dust and ice aerosol properties to date. TES visible (solar band average) and infrared spectral EPF sequences are analyzed self-consistently with detailed multiple scattering radiative transfer codes. As a consequence of the combined angular and wavelength coverage, we are able to define two distinct ice cloud types at 45\\arcdeg S-45\\arcdeg N latitudes on Mars. Type I ice clouds exhibit small particle sizes (1-2 \\micron\\ radii), as well as a broad, deep minimum in side-scattering that are potentially indicative of aligned ice grains. Type I ice aerosols are most prevalent in the southern hemisphere during Mars aphelion, but also appear more widely distributed in season and latitude as topographic and high altitude (>20 km) ice hazes. Type II ice clouds exhibit larger particle sizes (3-5 \\micron) and a much narrower side-scattering minimum, indicative of poorer grain alignment or a change in particle shape relative to the type I ice clouds. Type II ice clouds appear most prominently in the northern subtropical aphelion cloud belt, where relatively low altitudes water vapor saturation (10 km) coincide with strong advective transport. Retrieved dust particle radii of 1.5-1.8 \\micron\\ are consistent with Pathfinder and recent Viking/Mariner 9 reanalyses. Our analyses also find EPF-derived dust single scattering albedos (ssa) in agreement with those from Pathfinder. Spatial and seasonal changes in the dust ssa (0.92-0.95, solar band average) and phase functions suggest possible dust property variations, but may also be a consequence of variable high altitude ice hazes. The annual variations of both dust and ice clouds at 45S-45N latitudes are predominately orbital rather than seasonal in character and have shown remarkable repeatability during the portions of two Mars years observed by MGS.

Burial of gas-phase HNO(3) by growing ice surfaces under tropospheric conditions.

PubMed

Ullerstam, Maria; Abbatt, Jonathan P D

2005-10-21

The uptake of gas-phase nitric acid by ice surfaces undergoing growth by vapor deposition has been performed for the first time under conditions of the free troposphere. The investigation was performed using a coated-wall flow tube coupled to a chemical ionization mass spectrometer, at nitric acid partial pressures between 10(-7) and 10(-6) hPa, at 214, 229 and 239 K. Ice surfaces were prepared as smooth ice films from ultra-pure water. During the experiments an excess flow of water vapor was added to the carrier gas flow and the existing ice surfaces grew by depositing water vapor. The average growth rates ranged from 0.7-5 microm min(-1), values similar to those which prevail in some portions of the atmosphere. With growing ice the long term uptake of nitric acid is significantly enhanced compared to an experiment performed at equilibrium, i.e. at 100% relative humidity (RH) with respect to ice. The fraction of HNO(3) that is deposited onto the growing ice surface is independent of the growth rate and may be driven by the solubility of the nitric acid in the growing ice film rather than by condensation kinetics alone.

Insights into the Initiation of Eukaryotic DNA Replication.

PubMed

Bruck, Irina; Perez-Arnaiz, Patricia; Colbert, Max K; Kaplan, Daniel L

2015-01-01

The initiation of DNA replication is a highly regulated event in eukaryotic cells to ensure that the entire genome is copied once and only once during S phase. The primary target of cellular regulation of eukaryotic DNA replication initiation is the assembly and activation of the replication fork helicase, the 11-subunit assembly that unwinds DNA at a replication fork. The replication fork helicase, called CMG for Cdc45-Mcm2-7, and GINS, assembles in S phase from the constituent Cdc45, Mcm2-7, and GINS proteins. The assembly and activation of the CMG replication fork helicase during S phase is governed by 2 S-phase specific kinases, CDK and DDK. CDK stimulates the interaction between Sld2, Sld3, and Dpb11, 3 initiation factors that are each required for the initiation of DNA replication. DDK, on the other hand, phosphorylates the Mcm2, Mcm4, and Mcm6 subunits of the Mcm2-7 complex. Sld3 recruits Cdc45 to Mcm2-7 in a manner that depends on DDK, and recent work suggests that Sld3 binds directly to Mcm2-7 and also to single-stranded DNA. Furthermore, recent work demonstrates that Sld3 and its human homolog Treslin substantially stimulate DDK phosphorylation of Mcm2. These data suggest that the initiation factor Sld3/Treslin coordinates the assembly and activation of the eukaryotic replication fork helicase by recruiting Cdc45 to Mcm2-7, stimulating DDK phosphorylation of Mcm2, and binding directly to single-stranded DNA as the origin is melted.

Transferable model of water with variable molecular size

NASA Astrophysics Data System (ADS)

Kiss, Péter T.; Baranyai, András

2011-06-01

By decreasing the steepness of the repulsive wing in the intermolecular potential, one can extend the applicability of a water model to the high pressure region. Exploiting this trivial possibility, we published a polarizable model of water which provided good estimations not only of gas clusters, ambient liquid, hexagonal ice, but ice VII at very high pressures as well [A. Baranyai and P. Kiss, J. Chem. Phys. 133, 144109 (2010), 10.1063/1.3490660]. This straightforward method works well provided the closest O-O distance is reasonably shorter in the high pressure phase than in hexagonal ice. If these O-O distances are close to each other and we fit the interactions to obtain an accurate picture of hexagonal ice, we underestimate the density of the high-pressure phases. This can be overcome if models use contracted molecules under high external pressure.In this paper we present a method, which is capable to describe the contraction of water molecules under high pressure by using two simple repulsion-attraction functions. These functions represent the dispersion interaction under low pressure and high pressure. The switch function varies between 0 and 1 and portions the two repulsions among the individual particles. The argument of the switch function is a virial-type expression, which can be interpreted as a net force compressing the molecule. We calculated the properties of gas clusters, densities, and internal energies of ambient water, hexagonal ice, ice III, ice VI, and ice VII phases and obtained excellent match of experimental data.

Physical and chemical properties of ice residuals during the 2013 and 2014 CLACE campaigns

NASA Astrophysics Data System (ADS)

Kupiszewski, Piotr; Weingartner, Ernest; Vochezer, Paul; Hammer, Emanuel; Gysel, Martin; Färber, Raphael; Fuchs, Claudia; Schnaiter, Martin; Baltensperger, Urs; Schmidt, Susan; Schneider, Johannes; Bigi, Alessandro; Toprak, Emre; Linke, Claudia; Klimach, Thomas

2014-05-01

The shortcomings in our understanding and, thus, representation of aerosol-cloud interactions are one of the major sources of uncertainty in climate model projections. Among the poorly understood processes is mixed-phase cloud formation via heterogeneous nucleation, and the subsequent spatial and temporal evolution of such clouds. Cloud glaciation augments precipitation formation, resulting in decreased cloud cover and lifetime, and affects cloud radiative properties. Meanwhile, the physical and chemical properties of atmospherically relevant ice nuclei (IN), the sub-population of aerosol particles which enable heterogeneous nucleation, are not well known. Extraction of ice residuals (IR) in mixed-phase clouds is a difficult task, requiring separation of the few small, freshly formed ice crystals (the IR within such crystals can be deemed representative of the original IN) not only from interstitial particles, but also from the numerous supercooled droplets which have aerodynamic diameters similar to those of the ice crystals. In order to address the difficulties with ice crystal sampling and IR extraction in mixed-phase clouds, the new Ice Selective Inlet (ISI) has been designed and deployed at the Jungfraujoch field site. Small ice crystals are selectively sampled via the inlet with simultaneous counting, sizing and imaging of hydrometeors contained in the cloud by a set of optical particle spectrometers, namely Welas optical particle counters (OPC) and a Particle Phase Discriminator (PPD). The heart of the ISI is a droplet evaporation unit with ice-covered inner walls, resulting in removal of droplets using the Wegener-Bergeron-Findeisen process, while transmitting a relatively high fraction of small ice crystals. The ISI was deployed in the winters of 2013 and 2014 at the high alpine Jungfraujoch site (3580 m.a.s.l) during the intensive CLACE field campaigns. The measurements focused on analysis of the physical and chemical characteristics of IR and the microphysical properties of mixed-phase clouds. A host of aerosol instrumentation was deployed downstream of the ISI, including a Grimm OPC and a scanning mobility particle sizer (SMPS) for number size distribution measurements, as well as a single particle mass spectrometer (ALABAMA; 2013 only), single particle soot photometers (SP2) and a Wideband Integrated Bioaerosol Sensor (WIBS-4) for analysis of the chemical composition, with particular focus on the content of black carbon (BC) and biological particles in IR. Corresponding instrumentation sampled through a total aerosol inlet. By comparing observations from the ISI with those from the total inlet the characteristics of ice residuals relative to the total aerosol could be established. First results from these analyses will be presented.

Theory of amorphous ices

PubMed Central

Limmer, David T.; Chandler, David

2014-01-01

We derive a phase diagram for amorphous solids and liquid supercooled water and explain why the amorphous solids of water exist in several different forms. Application of large-deviation theory allows us to prepare such phases in computer simulations. Along with nonequilibrium transitions between the ergodic liquid and two distinct amorphous solids, we establish coexistence between these two amorphous solids. The phase diagram we predict includes a nonequilibrium triple point where two amorphous phases and the liquid coexist. Whereas the amorphous solids are long-lived and slowly aging glasses, their melting can lead quickly to the formation of crystalline ice. Further, melting of the higher density amorphous solid at low pressures takes place in steps, transitioning to the lower-density glass before accessing a nonequilibrium liquid from which ice coarsens. PMID:24858957

Water freezing and ice melting

DOE PAGES

Malolepsza, Edyta; Keyes, Tom

2015-10-12

The generalized replica exchange method (gREM) is designed to sample states with coexisting phases and thereby to describe strong first order phase transitions. The isobaric MD version of the gREM is presented and applied to freezing of liquid water, and melting of hexagonal and cubic ice. It is confirmed that coexisting states are well sampled. The statistical temperature as a function of enthalpy, T S(H), is obtained. Hysteresis between freezing and melting is observed and discussed. The entropic analysis of phase transitions is applied and equilibrium transition temperatures, latent heats, and surface tensions are obtained for hexagonal ice↔liquid and cubicmore » ice↔liquid, with excellent agreement with published values. A new method is given to assign water molecules among various symmetry types. As a result, pathways for water freezing, ultimately leading to hexagonal ice, are found to contain intermediate layered structures built from hexagonal and cubic ice.« less

Influence of the Little Ice Age on the biological structure of lakes in South West Greenland

NASA Astrophysics Data System (ADS)

McGowan, S.; Hogan, E. J.; Jones, V.; Anderson, N. J.; Simpson, G.

2013-12-01

Arctic lakes are considered to be particularly sensitive to environmental change, with biological remains in lake sediment records being interpreted as reflecting climate forcing. However the influence that differences in catchment properties and lake morphometries have on the sedimentary record is rarely considered. We investigated sediment cores from three lakes located close to the inland ice sheet margin in the Kangerlussuaq area of South West Greenland but within a few kilometres of one another. This regional replication allowed for direct comparisons of biological change in lakes exposed to identical environmental pressures (cooling, increased wind speeds) over the past c.2000 years. Sedimentary pigments were used as a proxy for whole-lake production and to investigate differences in phytoplankton community structure whilst fossil diatom assemblages were studied to determine differences in ecological responses during this time. We noted several major effects of the Little Ice Age cooling (LIA, c. 1400-1850AD). The organic content of sediments in all three lakes declined, and this effect was most pronounced in lakes closest to the inland ice sheet margin, which suggests that aeolian inputs derived from the glacial outwash plains (sandurs), and wind-scouring of the thin catchment soils by strong katabatic winds associated with the regional cooling might have both contributed to this sedimentary change. During the LIA total algal production (as indicated by chlorophyll and carotenoid pigments) was lower in all three lakes, most likely because of extended ice-cover and shorter growing seasons, and the ratio of planktonic: benthic diatom taxa increased, possibly because of lower light availability or fertilization from loess material. Despite this coherence in lake response to the LIA, diatom community composition changes in individual lakes differed, reflecting individual lake morphometry and catchment characteristics. These findings highlight the importance of regionally-replicated palaeo-studies when interpreting ecological impacts of long-term climate variability, and in assessing likely future response to climate change.

Local and Total Density Measurements in Ice Shapes

NASA Technical Reports Server (NTRS)

Vargas, Mario; Broughton, Howard; Sims, James J.; Bleeze, Brian; Gaines, Vatanna

2005-01-01

Preliminary measurements of local and total densities inside ice shapes were obtained from ice shapes grown in the NASA Glenn Research Tunnel for a range of glaze ice, rime ice, and mixed phase ice conditions on a NACA 0012 airfoil at 0 angle of attack. The ice shapes were removed from the airfoil and a slice of ice 3 mm thick was obtained using a microtome. The resulting samples were then x-rayed to obtain a micro-radiography, the film was digitized, and image processing techniques were used to extract the local and total density values.

Modelling ice microphysics of mixed-phase clouds

NASA Astrophysics Data System (ADS)

Ahola, J.; Raatikainen, T.; Tonttila, J.; Romakkaniemi, S.; Kokkola, H.; Korhonen, H.

2017-12-01

The low-level Arctic mixed-phase clouds have a significant role for the Arctic climate due to their ability to absorb and reflect radiation. Since the climate change is amplified in polar areas, it is vital to apprehend the mixed-phase cloud processes. From a modelling point of view, this requires a high spatiotemporal resolution to capture turbulence and the relevant microphysical processes, which has shown to be difficult.In order to solve this problem about modelling mixed-phase clouds, a new ice microphysics description has been developed. The recently published large-eddy simulation cloud model UCLALES-SALSA offers a good base for a feasible solution (Tonttila et al., Geosci. Mod. Dev., 10:169-188, 2017). The model includes aerosol-cloud interactions described with a sectional SALSA module (Kokkola et al., Atmos. Chem. Phys., 8, 2469-2483, 2008), which represents a good compromise between detail and computational expense.Newly, the SALSA module has been upgraded to include also ice microphysics. The dynamical part of the model is based on well-known UCLA-LES model (Stevens et al., J. Atmos. Sci., 56, 3963-3984, 1999) which can be used to study cloud dynamics on a fine grid.The microphysical description of ice is sectional and the included processes consist of formation, growth and removal of ice and snow particles. Ice cloud particles are formed by parameterized homo- or heterogeneous nucleation. The growth mechanisms of ice particles and snow include coagulation and condensation of water vapor. Autoconversion from cloud ice particles to snow is parameterized. The removal of ice particles and snow happens by sedimentation and melting.The implementation of ice microphysics is tested by initializing the cloud simulation with atmospheric observations from the Indirect and Semi-Direct Aerosol Campaign (ISDAC). The results are compared to the model results shown in the paper of Ovchinnikov et al. (J. Adv. Model. Earth Syst., 6, 223-248, 2014) and they show a good match. One of the advantages of UCLALES-SALSA is that it can be used to quantify the effect of aerosol scavenging on cloud properties in a precise way.

Recent Advances in the LEWICE Icing Model

NASA Technical Reports Server (NTRS)

Wright, William B.; Addy, Gene; Struk, Peter; Bartkus, Tadas

2015-01-01

This paper will describe two recent modifications to the Glenn ICE software. First, a capability for modeling ice crystals and mixed phase icing has been modified based on recent experimental data. Modifications have been made to the ice particle bouncing and erosion model. This capability has been added as part of a larger effort to model ice crystal ingestion in aircraft engines. Comparisons have been made to ice crystal ice accretions performed in the NRC Research Altitude Test Facility (RATFac). Second, modifications were made to the run back model based on data and observations from thermal scaling tests performed in the NRC Altitude Icing Tunnel.

Blood pressure responses to dietary sodium and potassium interventions and the cold pressor test: the GenSalt replication study in rural North China.

PubMed

Zhao, Qi; Gu, Dongfeng; Chen, Jichun; Li, Jianxin; Cao, Jie; Lu, Fanghong; Guo, Dongshuang; Wang, Renping; Shen, Jinjin; Chen, Jing; Chen, Chung-Shiuan; Mills, Katherine T; Schwander, Karen; Rao, Dabeeru C; He, Jiang

2014-01-01

In the Genetic Epidemiology Network of Salt Sensitivity (GenSalt) study, we observed that blood pressure (BP) responses to dietary sodium and potassium interventions and the cold pressor test (CPT) varied greatly among individuals. We conducted a replication study to confirm our previous findings among 695 study participants. The dietary intervention included a 7-day low sodium (51.3 mmol/day), a 7-day high sodium (307.8 mmol/day), and a 7-day high sodium with potassium supplementation (307.8 mmol sodium and 60 mmol potassium/day). BP measurements were obtained during the baseline and each intervention phase. During the CPT, BP was measured before and at 0, 1, 2, and 4 minutes after the participants immersed their right hand in ice water for 1 minute. Systolic and diastolic BP responses (mean ± SD (range), mm Hg) were 8.1±8.4 (-39.1 to 18.2) and -3.5±5.1 (-25.1 to 11.1) to low sodium, 9.1±8.4 (-13.3 to 33.1) and 4.0±5.4 (-16.0 to 20.7) to high sodium, and -4.6±5.8 (-31.8 to 11.6) and -1.9±4.3 (-16.9 to 14.2) to potassium supplementation, respectively (all P < 0.0001 for comparison with each former phase). The mean maximum systolic and diastolic BP responses to the CPT were 16.5±10.5 (-15.3 to 63.3) and 7.6±6.1 (-8.7 to 39.3), respectively (all P < 0.0001). Our study indicates that there are large variations in BP responses to dietary sodium and potassium interventions and to the CPT among individuals.

Aerosol partitioning in mixed-phase clouds at the Jungfraujoch (3580 m asl)

NASA Astrophysics Data System (ADS)

Henning, S.; Bojinski, S.; Diehl, K.; Ghan, S.; Nyeki, S.; Weingartner, E.; Wurzler, S.; Baltensperger, U.

2003-04-01

Field measurements on the partitioning between the interstitial and the liquid/ice phase in natural clouds were performed at the high-alpine research station Jungfraujoch (3580 m asl, Switzerland) during a summer and a winter campaign. The size distributions of the total and the interstitial aerosol were determined by means of a scanning mobility particle sizer (SMPS). From these, size resolved scavenging ratios were calculated. Simultaneously, cloud water content (CWC) and cloud particle size distributions along with meteorological data were obtained. In cold mixed phase clouds (existing of liquid droplets and ice crystals), strong differences were found in comparison to the warm summer clouds. In the warm cloud types all particles above a certain diameter were activated and thereby the scavenging ratio (number of activated particles divided by the total number concentration) above a certain threshold diameter approached 1. In the winter clouds, the scavenging ratio never reached the value of 1 and could be as low as 0. These observations are explained by the Bergeron-Findeisen process: Here, particles are also activated to droplets in the first step, but after the formation of the ice phase droplets evaporate while the ice crystals grow, due to difference in the saturation vapor pressure over water and ice. This release of aerosol particles to the interstitial aerosol has significant implications for the climate forcing: It can be expected that the number of CCN is of less importance as soon as ice crystals are formed.

Pre-cometary ice composition from hot core chemistry.

PubMed

Tornow, Carmen; Kührt, Ekkehard; Motschmann, Uwe

2005-10-01

Pre-cometary ice located around star-forming regions contains molecules that are pre-biotic compounds or pre-biotic precursors. Molecular line surveys of hot cores provide information on the composition of the ice since it sublimates near these sites. We have combined a hydrostatic hot core model with a complex network of chemical reactions to calculate the time-dependent abundances of molecules, ions, and radicals. The model considers the interaction between the ice and gas phase. It is applied to the Orion hot core where high-mass star formation occurs, and to the solar-mass binary protostar system IRAS 16293-2422. Our calculations show that at the end of the hot core phase both star-forming sites produce the same prebiotic CN-bearing molecules. However, in the Orion hot core these molecules are formed in larger abundances. A comparison of the calculated values with the abundances derived from the observed line data requires a chemically unprocessed molecular cloud as the initial state of hot core evolution. Thus, it appears that these objects are formed at a much younger cloud stage than previously thought. This implies that the ice phase of the young clouds does not contain CN-bearing molecules in large abundances before the hot core has been formed. The pre-biotic molecules synthesized in hot cores cause a chemical enrichment in the gas phase and in the pre-cometary ice. This enrichment is thought to be an important extraterrestrial aspect of the formation of life on Earth and elsewhere.

On the Representation of Cloud Phase in Global Climate Models, and its Importance for Simulations of Climate Forcings and Feedbacks

NASA Astrophysics Data System (ADS)

Storelvmo, Trude; Sagoo, Navjit; Tan, Ivy

2016-04-01

Despite the growing effort in improving the cloud microphysical schemes in GCMs, most of this effort has not focused on improving the ability of GCMs to accurately simulate phase partitioning in mixed-phase clouds. Getting the relative proportion of liquid droplets and ice crystals in clouds right in GCMs is critical for the representation of cloud radiative forcings and cloud-climate feedbacks. Here, we first present satellite observations of cloud phase obtained by NASA's CALIOP instrument, and report on robust statistical relationships between cloud phase and several aerosols species that have been demonstrated to act as ice nuclei (IN) in laboratory studies. We then report on results from model intercomparison projects that reveal that GCMs generally underestimate the amount of supercooled liquid in clouds. For a selected GCM (NCAR 's CAM5), we thereafter show that the underestimate can be attributed to two main factors: i) the presence of IN in the mixed-phase temperature range, and ii) the Wegener-Bergeron-Findeisen process, which converts liquid to ice once ice crystals have formed. Finally, we show that adjusting these two processes such that the GCM's cloud phase is in agreement with the observed has a substantial impact on the simulated radiative forcing due to IN perturbations, as well as on the cloud-climate feedbacks and ultimately climate sensitivity simulated by the GCM.

UAS measurements of ice fog and diamond dust in the Arctic at the DOE ARM mobile facility of Oliktok Point, Alaska

NASA Astrophysics Data System (ADS)

Schmitt, C. G.; Stuefer, M.; Heymsfield, A.

2013-12-01

We report on our planned airborne studies of ice fog and diamond dust at the DOE Atmospheric Radiation Measurement (ARM) mobile facility at Oliktok Point, Alaska. Measurements are proposed with a newly developed small version of a Video-Ice Particle Sampler (VIPS) as well as ice crystal replicators; the instruments will be flown aboard a hexacopter type unmanned aerial system (UAS). The UAS will operate at favorable low wind situations within an altitude range of approximate 3000 feet from the surface. Ice fog and diamond dust have been observed up to 50% of all winter days at selected locations in the Arctic. Strong surface-based temperature inversions form during the Arctic winter months from November to May as an effect of the low solar energy received at the surface. The cold and very stable boundary layer inhibits vertical aerosol exchange processes with the free atmosphere, which leads to continuous formation and accumulation of atmospheric ice crystals. Vertical changes in particle numbers, type, and size distribution will provide a wealth of new information about the properties and variability of low level Arctic ice aerosol. Additional continuous ground based cloud particle measurements will allow evaluation of temporal changes of the ice crystals. A goal of the study is to evaluate regional anthropogenic and natural effects on ice fog microphysics. Oliktok Point is located along the typical short-range trajectories of industrial pollutants (~30 miles northwest of the Prudhoe Bay Oilfields). Differences in ice particle microphysics and nuclei characteristics will allow evaluation of regional anthropogenic effects.

Different rates of DNA replication at early versus late S-phase sections: multiscale modeling of stochastic events related to DNA content/EdU (5-ethynyl-2'deoxyuridine) incorporation distributions.

PubMed

Li, Biao; Zhao, Hong; Rybak, Paulina; Dobrucki, Jurek W; Darzynkiewicz, Zbigniew; Kimmel, Marek

2014-09-01

Mathematical modeling allows relating molecular events to single-cell characteristics assessed by multiparameter cytometry. In the present study we labeled newly synthesized DNA in A549 human lung carcinoma cells with 15-120 min pulses of EdU. All DNA was stained with DAPI and cellular fluorescence was measured by laser scanning cytometry. The frequency of cells in the ascending (left) side of the "horseshoe"-shaped EdU/DAPI bivariate distributions reports the rate of DNA replication at the time of entrance to S phase while their frequency in the descending (right) side is a marker of DNA replication rate at the time of transition from S to G2 phase. To understand the connection between molecular-scale events and scatterplot asymmetry, we developed a multiscale stochastic model, which simulates DNA replication and cell cycle progression of individual cells and produces in silico EdU/DAPI scatterplots. For each S-phase cell the time points at which replication origins are fired are modeled by a non-homogeneous Poisson Process (NHPP). Shifted gamma distributions are assumed for durations of cell cycle phases (G1, S and G2 M), Depending on the rate of DNA synthesis being an increasing or decreasing function, simulated EdU/DAPI bivariate graphs show predominance of cells in left (early-S) or right (late-S) side of the horseshoe distribution. Assuming NHPP rate estimated from independent experiments, simulated EdU/DAPI graphs are nearly indistinguishable from those experimentally observed. This finding proves consistency between the S-phase DNA-replication rate based on molecular-scale analyses, and cell population kinetics ascertained from EdU/DAPI scatterplots and demonstrates that DNA replication rate at entrance to S is relatively slow compared with its rather abrupt termination during S to G2 transition. Our approach opens a possibility of similar modeling to study the effect of anticancer drugs on DNA replication/cell cycle progression and also to quantify other kinetic events that can be measured during S-phase. © 2014 International Society for Advancement of Cytometry.

On the Representation of Ice Nucleation in Global Climate Models, and its Importance for Simulations of Climate Forcings and Feedbacks

NASA Astrophysics Data System (ADS)

Storelvmo, T.

2015-12-01

Substantial improvements have been made to the cloud microphysical schemes used in the latest generation of global climate models (GCMs), however, an outstanding weakness of these schemes lies in the arbitrariness of their tuning parameters. Despite the growing effort in improving the cloud microphysical schemes in GCMs, most of this effort has not focused on improving the ability of GCMs to accurately simulate phase partitioning in mixed-phase clouds. Getting the relative proportion of liquid droplets and ice crystals in clouds right in GCMs is critical for the representation of cloud radiative forcings and cloud-climate feedbacks. Here, we first present satellite observations of cloud phase obtained by NASA's CALIOP instrument, and report on robust statistical relationships between cloud phase and several aerosols species that have been demonstrated to act as ice nuclei (IN) in laboratory studies. We then report on results from model intercomparison projects that reveal that GCMs generally underestimate the amount of supercooled liquid in clouds. For a selected GCM (NCAR 's CAM5), we thereafter show that the underestimate can be attributed to two main factors: i) the presence of IN in the mixed-phase temperature range, and ii) the Wegener-Bergeron-Findeisen process, which converts liquid to ice once ice crystals have formed. Finally, we show that adjusting these two processes such that the GCM's cloud phase is in agreement with the observed has a substantial impact on the simulated radiative forcing due to IN perturbations, as well as on the cloud-climate feedbacks and ultimately climate sensitivity simulated by the GCM.

Chromosomal transfers in mycoplasmas: when minimal genomes go mobile.

PubMed

Dordet-Frisoni, Emilie; Sagné, Eveline; Baranowski, Eric; Breton, Marc; Nouvel, Laurent Xavier; Blanchard, Alain; Marenda, Marc Serge; Tardy, Florence; Sirand-Pugnet, Pascal; Citti, Christine

2014-11-25

Horizontal gene transfer (HGT) is a main driving force of bacterial evolution and innovation. This phenomenon was long thought to be marginal in mycoplasmas, a large group of self-replicating bacteria characterized by minute genomes as a result of successive gene losses during evolution. Recent comparative genomic analyses challenged this paradigm, but the occurrence of chromosomal exchanges had never been formally addressed in mycoplasmas. Here, we demonstrated the conjugal transfer of large chromosomal regions within and among ruminant mycoplasma species, with the incorporation of the incoming DNA occurring by homologous recombination into the recipient chromosome. By combining classical mating experiments with high-throughput next-generation sequencing, we documented the transfer of almost every position of the mycoplasma chromosome. Mycoplasma conjugation relies on the occurrence of an integrative conjugative element (ICE) in at least one parent cell. While ICE propagates horizontally from ICE-positive to ICE-negative cells, chromosomal transfers (CTs) occurred in the opposite direction, from ICE-negative to ICE-positive cells, independently of ICE movement. These findings challenged the classical mechanisms proposed for other bacteria in which conjugative CTs are driven by conjugative elements, bringing into the spotlight a new means for rapid mycoplasma innovation. Overall, they radically change our current views concerning the evolution of mycoplasmas, with particularly far-reaching implications given that over 50 species are human or animal pathogens. Horizontal gene transfers (HGT) shape bacterial genomes and are key contributors to microbial diversity and innovation. One main mechanism involves conjugation, a process that allows the simultaneous transfer of significant amounts of DNA upon cell-to-cell contact. Recognizing and deciphering conjugal mechanisms are thus essential in understanding the impact of gene flux on bacterial evolution. We addressed this issue in mycoplasmas, the smallest and simplest self-replicating bacteria. In these organisms, HGT was long thought to be marginal. We showed here that nearly every position of the Mycoplasma agalactiae chromosome could be transferred via conjugation, using an unconventional mechanism. The transfer involved DNA blocks containing up to 80 genes that were incorporated into the host chromosome by homologous recombination. These findings radically change our views concerning mycoplasma evolution and adaptation with particularly far-reaching implications given that over 50 species are human or animal pathogens. Copyright © 2014 Dordet-Frisoni et al.

Synthesis of formamide and isocyanic acid after ion irradiation of frozen gas mixtures

NASA Astrophysics Data System (ADS)

Kaňuchová, Z.; Urso, R. G.; Baratta, G. A.; Brucato, J. R.; Palumbo, M. E.; Strazzulla, G.

2016-01-01

Context. Formamide (NH2HCO) and isocyanic acid (HNCO) have been observed as gaseous species in several astronomical environments such as cometary comae and pre- and proto-stellar objects. A debate is open on the formation route of those molecules, in particular if they are formed by chemical reactions in the gas phase and/or on grains. In this latter case it is relevant to understand if the formation occurs through surface reactions or is induced by energetic processing. Aims: We present arguments that support the formation of formamide in the solid phase by cosmic-ion-induced energetic processing of ices present as mantles of interstellar grains and on comets. Formamides, along with other molecules, are expelled in the gas phase when the physical parameters are appropriate to induce the desorption of ices. Methods: We have performed several laboratory experiments in which ice mixtures (H2O:CH4:N2, H2O:CH4:NH3, and CH3OH:N2) were bombarded with energetic (30-200 keV) ions (H+ or He+). FTIR spectroscopy was performed before, during, and after ion bombardment. In particular, the formation of HNCO and NH2HCO was measured quantiatively. Results: Energetic processing of ice can quantitatively reproduce the amount of NH2HCO observed in cometary comae and in many circumstellar regions. HNCO is also formed, but additional formation mechanisms are requested to quantitatively account for the astronomical observations. Conclusions: We suggest that energetic processing of ices in the pre- and proto-stellar regions and in comets is the main mechanism to produce formamide, which, once it is released in the gas phase because of desorption of ices, is observed in the gas phase in these astrophysical environments.

High pressure study of water-salt systems, phase equilibria, partitioning, thermodynic properties and implication for large icy worlds hydrospheres.

NASA Astrophysics Data System (ADS)

Journaux, B.; Brown, J. M.; Abramson, E.; Petitgirard, S.; Pakhomova, A.; Boffa Ballaran, T.; Collings, I.

2017-12-01

Water salt systems are predicted to be present in deep hydrosphere inside water-rich planetary bodies, following water/rock chemical interaction during early differentiation stages or later hydrothermal activity. Unfortunately the current knowledge of the thermodynamic and physical properties of aqueous salt mixtures at high pressure and high temperature is still insufficient to allow realistic modeling of the chemical or dynamic of thick planetary hydrospheres. Recent experimental results have shown that the presence of solutes, and more particularly salts, in equilibrium with high pressure ices have large effects on the stability fields, buoyancy and chemistry of all the phases present at these extreme conditions. Effects currently being investigated by our research group also covers ice melting curve depressions that depend on the salt species and incorporation of solutes inside the crystallographic lattice of high pressure ices. Both of these could have very important implication at the planetary scale, enabling thicker/deeper liquid oceans, and allowing chemical transportation through the high pressure ice layer in large icy worlds. We will present the latest results obtained in-situ using diamond anvil cell, coupled with Synchrotron X-Ray diffraction, Raman Spectroscopy and optical observations, allowing to probe the crystallographic structure, equations of state, partitioning and phase boundary of high pressure ice VI and VII in equilibrium with Na-Mg-SO4-Cl ionic species at high pressures (1-10 GPa). The difference in melting behavior depending on the dissolved salt species was characterized, suggesting differences in ionic speciation at liquidus conditions. The solidus P-T conditions were also measured as well as an increase of lattice volumes interpreted as an outcome of ionic incorporation in HP ice during incongruent crystallization. The measured phase diagrams, lattice volumes and important salt incorporations suggest a more complex picture of the structure, dynamic and evolution of icy worlds hydrospheres that could allow, among others, deep liquid reservoirs, chemical transport at the solid state through HP ices layers and/or complex dynamic due to salt exsolutions at HP ices solid-solid phase boundaries.

Parameterizing Size Distribution in Ice Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

DeSlover, Daniel; Mitchell, David L.

2009-09-25

PARAMETERIZING SIZE DISTRIBUTIONS IN ICE CLOUDS David L. Mitchell and Daniel H. DeSlover ABSTRACT An outstanding problem that contributes considerable uncertainty to Global Climate Model (GCM) predictions of future climate is the characterization of ice particle sizes in cirrus clouds. Recent parameterizations of ice cloud effective diameter differ by a factor of three, which, for overcast conditions, often translate to changes in outgoing longwave radiation (OLR) of 55 W m-2 or more. Much of this uncertainty in cirrus particle sizes is related to the problem of ice particle shattering during in situ sampling of the ice particle size distribution (PSD).more » Ice particles often shatter into many smaller ice fragments upon collision with the rim of the probe inlet tube. These small ice artifacts are counted as real ice crystals, resulting in anomalously high concentrations of small ice crystals (D < 100 µm) and underestimates of the mean and effective size of the PSD. Half of the cirrus cloud optical depth calculated from these in situ measurements can be due to this shattering phenomenon. Another challenge is the determination of ice and liquid water amounts in mixed phase clouds. Mixed phase clouds in the Arctic contain mostly liquid water, and the presence of ice is important for determining their lifecycle. Colder high clouds between -20 and -36 oC may also be mixed phase but in this case their condensate is mostly ice with low levels of liquid water. Rather than affecting their lifecycle, the presence of liquid dramatically affects the cloud optical properties, which affects cloud-climate feedback processes in GCMs. This project has made advancements in solving both of these problems. Regarding the first problem, PSD in ice clouds are uncertain due to the inability to reliably measure the concentrations of the smallest crystals (D < 100 µm), known as the “small mode”. Rather than using in situ probe measurements aboard aircraft, we employed a treatment of ice cloud optical properties formulated in terms of PSD parameters in combination with remote measurements of thermal radiances to characterize the small mode. This is possible since the absorption efficiency (Qabs) of small mode crystals is larger at 12 µm wavelength relative to 11 µm wavelength due to the process of wave resonance or photon tunneling more active at 12 µm. This makes the 12/11 µm absorption optical depth ratio (or equivalently the 12/11 µm Qabs ratio) a means for detecting the relative concentration of small ice particles in cirrus. Using this principle, this project tested and developed PSD schemes that can help characterize cirrus clouds at each of the three ARM sites: SGP, NSA and TWP. This was the main effort of this project. These PSD schemes and ice sedimentation velocities predicted from them have been used to test the new cirrus microphysics parameterization in the GCM known as the Community Climate Systems Model (CCSM) as part of an ongoing collaboration with NCAR. Regarding the second problem, we developed and did preliminary testing on a passive thermal method for retrieving the total water path (TWP) of Arctic mixed phase clouds where TWPs are often in the range of 20 to 130 g m-2 (difficult for microwave radiometers to accurately measure). We also developed a new radar method for retrieving the cloud ice water content (IWC), which can be vertically integrated to yield the ice water path (IWP). These techniques were combined to determine the IWP and liquid water path (LWP) in Arctic clouds, and hence the fraction of ice and liquid water. We have tested this approach using a case study from the ARM field campaign called M-PACE (Mixed-Phase Arctic Cloud Experiment). This research led to a new satellite remote sensing method that appears promising for detecting low levels of liquid water in high clouds typically between -20 and -36 oC. We hope to develop this method in future research.« less

Modeling the evolution of the Laurentide Ice Sheet from MIS 3 to the Last Glacial Maximum: an approach using sea level modeling and ice flow dynamics

NASA Astrophysics Data System (ADS)

Weisenberg, J.; Pico, T.; Birch, L.; Mitrovica, J. X.

2017-12-01

The history of the Laurentide Ice Sheet since the Last Glacial Maximum ( 26 ka; LGM) is constrained by geological evidence of ice margin retreat in addition to relative sea-level (RSL) records in both the near and far field. Nonetheless, few observations exist constraining the ice sheet's extent across the glacial build-up phase preceding the LGM. Recent work correcting RSL records along the U.S. mid-Atlantic dated to mid-MIS 3 (50-35 ka) for glacial-isostatic adjustment (GIA) infer that the Laurentide Ice Sheet grew by more than three-fold in the 15 ky leading into the LGM. Here we test the plausibility of a late and extremely rapid glaciation by driving a high-resolution ice sheet model, based on a nonlinear diffusion equation for the ice thickness. We initialize this model at 44 ka with the mid-MIS 3 ice sheet configuration proposed by Pico et al. (2017), GIA-corrected basal topography, and mass balance representative of mid-MIS 3 conditions. These simulations predict rapid growth of the eastern Laurentide Ice Sheet, with rates consistent with achieving LGM ice volumes within 15 ky. We use these simulations to refine the initial ice configuration and present an improved and higher resolution model for North American ice cover during mid-MIS 3. In addition we show that assumptions of ice loads during the glacial phase, and the associated reconstructions of GIA-corrected basal topography, produce a bias that can underpredict ice growth rates in the late stages of the glaciation, which has important consequences for our understanding of the speed limit for ice growth on glacial timescales.

Validation of 3-D Ice Accretion Measurement Methodology for Experimental Aerodynamic Simulation

NASA Technical Reports Server (NTRS)

Broeren, Andy P.; Addy, Harold E., Jr.; Lee, Sam; Monastero, Marianne C.

2015-01-01

Determining the adverse aerodynamic effects due to ice accretion often relies on dry-air wind-tunnel testing of artificial, or simulated, ice shapes. Recent developments in ice-accretion documentation methods have yielded a laser-scanning capability that can measure highly three-dimensional (3-D) features of ice accreted in icing wind tunnels. The objective of this paper was to evaluate the aerodynamic accuracy of ice-accretion simulations generated from laser-scan data. Ice-accretion tests were conducted in the NASA Icing Research Tunnel using an 18-in. chord, two-dimensional (2-D) straight wing with NACA 23012 airfoil section. For six ice-accretion cases, a 3-D laser scan was performed to document the ice geometry prior to the molding process. Aerodynamic performance testing was conducted at the University of Illinois low-speed wind tunnel at a Reynolds number of 1.8 × 10(exp 6) and a Mach number of 0.18 with an 18-in. chord NACA 23012 airfoil model that was designed to accommodate the artificial ice shapes. The ice-accretion molds were used to fabricate one set of artificial ice shapes from polyurethane castings. The laser-scan data were used to fabricate another set of artificial ice shapes using rapid prototype manufacturing such as stereolithography. The iced-airfoil results with both sets of artificial ice shapes were compared to evaluate the aerodynamic simulation accuracy of the laser-scan data. For five of the six ice-accretion cases, there was excellent agreement in the iced-airfoil aerodynamic performance between the casting and laser-scan based simulations. For example, typical differences in iced-airfoil maximum lift coefficient were less than 3 percent with corresponding differences in stall angle of approximately 1 deg or less. The aerodynamic simulation accuracy reported in this paper has demonstrated the combined accuracy of the laser-scan and rapid-prototype manufacturing approach to simulating ice accretion for a NACA 23012 airfoil. For several of the ice-accretion cases tested, the aerodynamics is known to depend upon the small, three-dimensional features of the ice. These data show that the laser-scan and rapid-prototype manufacturing approach is capable of replicating these ice features within the reported accuracies of the laser-scan measurement and rapid-prototyping method; thus providing a new capability for high-fidelity ice-accretion documentation and artificial ice-shape fabrication for icing research.

Validation of 3-D Ice Accretion Measurement Methodology for Experimental Aerodynamic Simulation

NASA Technical Reports Server (NTRS)

Broeren, Andy P.; Addy, Harold E., Jr.; Lee, Sam; Monastero, Marianne C.

2014-01-01

Determining the adverse aerodynamic effects due to ice accretion often relies on dry-air wind-tunnel testing of artificial, or simulated, ice shapes. Recent developments in ice accretion documentation methods have yielded a laser-scanning capability that can measure highly three-dimensional features of ice accreted in icing wind tunnels. The objective of this paper was to evaluate the aerodynamic accuracy of ice-accretion simulations generated from laser-scan data. Ice-accretion tests were conducted in the NASA Icing Research Tunnel using an 18-inch chord, 2-D straight wing with NACA 23012 airfoil section. For six ice accretion cases, a 3-D laser scan was performed to document the ice geometry prior to the molding process. Aerodynamic performance testing was conducted at the University of Illinois low-speed wind tunnel at a Reynolds number of 1.8 x 10(exp 6) and a Mach number of 0.18 with an 18-inch chord NACA 23012 airfoil model that was designed to accommodate the artificial ice shapes. The ice-accretion molds were used to fabricate one set of artificial ice shapes from polyurethane castings. The laser-scan data were used to fabricate another set of artificial ice shapes using rapid prototype manufacturing such as stereolithography. The iced-airfoil results with both sets of artificial ice shapes were compared to evaluate the aerodynamic simulation accuracy of the laser-scan data. For four of the six ice-accretion cases, there was excellent agreement in the iced-airfoil aerodynamic performance between the casting and laser-scan based simulations. For example, typical differences in iced-airfoil maximum lift coefficient were less than 3% with corresponding differences in stall angle of approximately one degree or less. The aerodynamic simulation accuracy reported in this paper has demonstrated the combined accuracy of the laser-scan and rapid-prototype manufacturing approach to simulating ice accretion for a NACA 23012 airfoil. For several of the ice-accretion cases tested, the aerodynamics is known to depend upon the small, three dimensional features of the ice. These data show that the laser-scan and rapid-prototype manufacturing approach is capable of replicating these ice features within the reported accuracies of the laser-scan measurement and rapid-prototyping method; thus providing a new capability for high-fidelity ice-accretion documentation and artificial ice-shape fabrication for icing research.

Evaluation of the effects of ice massage applied to large intestine 4 (hegu) on postpartum pain during the active phase of labor

PubMed Central

Can, Hafize Ozturk; Saruhan, Aynur

2015-01-01

Background: The uterus continues to contract after childbirth. The pain caused by the contractions of the uterus can be as severe as labor pain. The study was aimed to evaluate the effects of ice massage applied to the large intestine 4 (LI4) on postpartum pain during the active phase of labor. Materials and Methods: The study was designed as a randomized controlled trial with three groups and carried out in two stages. The study sample comprised of 150 pregnant women, who were referred to a maternity hospital. In the experimental group, ice massage was applied to LI4 during four contractions within the active phase of labor. In the placebo group, pressure was applied to LI4 using silicone balloons and the third group was the control group. The Visual Analog Scale (VAS) and The McGill (Melzack) Pain Questionnaire (MPQ) were compared among the experimental, placebo, and control groups. Results: The mothers in the ice application group had the lowest mean VAS score. It was determined that ice massage applied to LI4 during the active phase of labor did not lead to any statistical differences in mothers in the first 24 hours postpartum in terms of the characteristics of the pain with MPQ and VAS. Conclusions: In the study, the perception of pain was tried to be minimized by applying pressure with ice balloons to LI4. However, although the application was determined to have made no difference in the pain intensity, the mothers’ statements in the ice application group suggested that they felt more comfortable than did the mothers in the other groups. PMID:25709702

Radar Differential Phase Signatures of Ice Orientation for the Prediction of Lightning Initiation and Cessation

NASA Technical Reports Server (NTRS)

Carey, L.D.; Petersen, W.A.; Deierling, W.

2009-01-01

The majority of lightning-related casualties typically occur during thunderstorm initiation (e.g., first flash) or dissipation (e.g., last flash). The physics of electrification and lightning production during thunderstorm initiation is fairly well understood. As such, the literature includes a number of studies presenting various radar techniques (using reflectivity and, if available, other dual-polarimetric parameters) for the anticipation of initial electrification and first lightning flash. These radar techniques have shown considerable skill at forecasting first flash. On the other hand, electrical processes and lightning production during thunderstorm dissipation are not nearly as well understood and few, if any, successful techniques have been developed to anticipate the last flash and subsequent cessation of lightning. One promising approach involves the use of dual-polarimetric radar variables to infer the presence of oriented ice crystals in lightning producing storms. In the absence of strong vertical electric fields, ice crystals fall with their largest (semi-major) axis in the horizontal associated with gravitational and aerodynamic forces. In thunderstorms, strong vertical electric fields (100-200 kV m(sup -1)) have been shown to orient small (less than 2 mm) ice crystals such that their semi-major axis is vertical (or nearly vertical). After a lightning flash, the electric field is typically relaxed and prior radar research suggests that ice crystals rapidly resume their preferred horizontal orientation. In active thunderstorms, the vertical electric field quickly recovers and the ice crystals repeat this cycle of orientation for each nearby flash. This change in ice crystal orientation from primarily horizontal to vertical during the development of strong vertical electric fields prior to a lightning flash forms the physical basis for anticipating lightning initiation and, potentially, cessation. Research has shown that radar reflectivity (Z) and other co-polar back-scattering radar measurements like differential reflectivity (Z(sub dr)) typically measured by operational dual-polarimetric radars are not sensitive to these changes in ice crystal orientation. However, prior research has demonstrated that oriented ice crystals cause significant propagation effects that can be routinely measured by most dual-polarimetric radars from X-band (3 cm) to S-band (10 cm) wavelengths using the differential propagation phase shift (often just called differential phase, phi(sub dp)) or its range derivative, the specific differential phase (K(sub dp)). Advantages of the differential phase include independence from absolute or relative power calibration, attenuation, differential attenuation and relative insensitivity to ground clutter and partial beam occultation effects (as long as the signal remains above noise). In research mode, these sorts of techniques have been used to anticipate initial cloud electrification, lightning initiation, and cessation. In this study, we develop a simplified model of ice crystal size, shape, orientation, dielectric, and associated radar scattering and propagation effects in order to simulate various idealized scenarios of ice crystals responding to a hypothetical electric field and their dual-polarimetric radar signatures leading up to lightning initiation and particularly cessation. The sensitivity of the K(sub dp) ice orientation signature to various ice properties and radar wavelength will be explored. Since K(sub dp) is proportional to frequency in the Rayleigh- Gans scattering regime, the ice orientation signatures should be more obvious at higher (lower) frequencies (wavelengths). As a result, simulations at radar wavelengths from 10 cm down to 1 cm (Ka-band) will be conducted. Resonance effects will be considered using the T-matrix method. Since most K(sub dp) Vbased observations have been shown at S-band, we will present ice orientation signatures from C-band (UAH/NASA ARMOR) and X-bd (UAH MAX) dual-polarimetric radars located in Northern Alabama. Issues related to optimal radar scanning for the detection of oriented ice will be discussed. Preliminary suggestions on how these differential phase signatures of oriented ice could contribute to lightning initiation and cessation algorithms will be presented.

Ice Particle Analysis of the Honeywell AL502 Engine Booster

NASA Technical Reports Server (NTRS)

Bidwell, Colin S.; Rigby, David L.

2015-01-01

A flow and ice particle trajectory analysis was performed for the booster of the Honeywell ALF502 engine. The analysis focused on two closely related conditions one of which produced an icing event and another which did not during testing of the ALF502 engine in the Propulsion Systems Lab (PSL) at NASA Glenn Research Center. The flow analysis was generated using the NASA Glenn GlennHT flow solver and the particle analysis was generated using the NASA Glenn LEWICE3D v3.63 ice accretion software. The inflow conditions for the two conditions were similar with the main differences being that the condition that produced the icing event was 6.8 K colder than the non-icing event case and the inflow ice water content (IWC) for the non-icing event case was 50% less than for the icing event case. The particle analysis, which considered sublimation, evaporation and phase change, was generated for a 5 micron ice particle with a sticky impact model and for a 24 micron median volume diameter (MVD), 7 bin ice particle distribution with a supercooled large droplet (SLD) splash model used to simulate ice particle breakup. The particle analysis did not consider the effect of the runback and re-impingement of water resulting from the heated spinner and anti-icing system. The results from the analysis showed that the amount of impingement for the components were similar for the same particle size and impact model for the icing and non-icing event conditions. This was attributed to the similar aerodynamic conditions in the booster for the two cases. The particle temperature and melt fraction were higher at the same location and particle size for the non-icing event than for the icing event case due to the higher incoming inflow temperature for the non-event case. The 5 micron ice particle case produced higher impact temperatures and higher melt fractions on the components downstream of the fan than the 24 micron MVD case because the average particle size generated by the particle breakup was larger than 5 microns which yielded less warming and melting. The analysis also showed that the melt fraction and wet bulb temperature icing criterion developed during tests in the Research Altitude Test Facility (RATFac) at the National Research Council (NRC) of Canada were useful in predicting icing events in the ALF502 engine. The development of an ice particle impact model which includes the effects of particle breakup, phase change, and surface state is necessary to further improve the prediction of ice particle transport with phase change through turbomachinery.

Claspin Promotes Normal Replication Fork Rates in Human Cells

PubMed Central

Helleday, Thomas; Caldecott, Keith W.

2008-01-01

The S phase-specific adaptor protein Claspin mediates the checkpoint response to replication stress by facilitating phosphorylation of Chk1 by ataxia-telangiectasia and Rad3-related (ATR). Evidence suggests that these components of the ATR pathway also play a critical role during physiological S phase. Chk1 is required for high rates of global replication fork progression, and Claspin interacts with the replication machinery and might therefore monitor normal DNA replication. Here, we have used DNA fiber labeling to investigate, for the first time, whether human Claspin is required for high rates of replication fork progression during normal S phase. We report that Claspin-depleted HeLa and HCT116 cells display levels of replication fork slowing similar to those observed in Chk1-depleted cells. This was also true in primary human 1BR3 fibroblasts, albeit to a lesser extent, suggesting that Claspin is a universal requirement for high replication fork rates in human cells. Interestingly, Claspin-depleted cells retained significant levels of Chk1 phosphorylation at both Ser317 and Ser345, raising the possibility that Claspin function during normal fork progression may extend beyond facilitating phosphorylation of either individual residue. Consistent with this possibility, depletion of Chk1 and Claspin together doubled the percentage of very slow forks, compared with depletion of either protein alone. PMID:18353973

Recovery from the DNA Replication Checkpoint

PubMed Central

Chaudhury, Indrajit; Koepp, Deanna M.

2016-01-01

Checkpoint recovery is integral to a successful checkpoint response. Checkpoint pathways monitor progress during cell division so that in the event of an error, the checkpoint is activated to block the cell cycle and activate repair pathways. Intrinsic to this process is that once repair has been achieved, the checkpoint signaling pathway is inactivated and cell cycle progression resumes. We use the term “checkpoint recovery” to describe the pathways responsible for the inactivation of checkpoint signaling and cell cycle re-entry after the initial stress has been alleviated. The DNA replication or S-phase checkpoint monitors the integrity of DNA synthesis. When replication stress is encountered, replication forks are stalled, and the checkpoint signaling pathway is activated. Central to recovery from the S-phase checkpoint is the restart of stalled replication forks. If checkpoint recovery fails, stalled forks may become unstable and lead to DNA breaks or unusual DNA structures that are difficult to resolve, causing genomic instability. Alternatively, if cell cycle resumption mechanisms become uncoupled from checkpoint inactivation, cells with under-replicated DNA might proceed through the cell cycle, also diminishing genomic stability. In this review, we discuss the molecular mechanisms that contribute to inactivation of the S-phase checkpoint signaling pathway and the restart of replication forks during recovery from replication stress. PMID:27801838

DOE Office of Scientific and Technical Information (OSTI.GOV)

Terai, Tsuyoshi; Itoh, Yoichi; Oasa, Yumiko

We present a measurement of H{sub 2}O ice crystallinity on the surface of trans-neptunian objects with near-infrared narrow-band imaging. The newly developed photometric technique allows us to efficiently determine the strength of a 1.65 μ m absorption feature in crystalline H{sub 2}O ice. Our data for three large objects—Haumea, Quaoar, and Orcus—which are known to contain crystalline H{sub 2}O ice on the surfaces, show a reasonable result with high fractions of the crystalline phase. It can also be pointed out that if the grain size of H{sub 2}O ice is larger than ∼20 μ m, the crystallinities of these objectsmore » are obviously below 1.0, which suggests the presence of the amorphous phase. In particular, Orcus exhibits a high abundance of amorphous H{sub 2}O ice compared to Haumea and Quaoar, possibly indicating a correlation between the bulk density of the bodies and the degree of surface crystallization. We also found the presence of crystalline H{sub 2}O ice on Typhon and 2008 AP{sub 129}, both of which are smaller than the minimum size limit for inducing cryovolcanism as well as a transition from amorphous to crystalline phase through thermal evolution due to the decay of long-lived isotopes.« less

High pressure cosmochemistry applied to major planetary interiors: Experimental studies. [phase diagram for the ammonia water system

NASA Technical Reports Server (NTRS)

Nicol, M. F.; Johnson, M.; Schwake, A.

1983-01-01

Progress is reported in the development of the P-T-X diagram for 0 less than or = X less than or = 0.50 and in the development of techniques for measuring adiabats of phases of NH3-H2O. The partial phase diagram is presented, investigations of the compositions of ammonia ices are described, and methods for obtaining the infrared spectra of ices are discussed.

High-Resolution NU-WRF Simulations of a Deep Convective-Precipitation System During MC3E: Part I: Comparisons Between Goddard Microphysics Schemes and Observations

NASA Technical Reports Server (NTRS)

Tao, Wei-Kuo; Wu, Di; Lang, Stephen; Chern, Jiun-Dar; Peters-Lidard, Christa; Fridlind, Ann; Matsui, Toshihisa

2016-01-01

The Goddard microphysics was recently improved by adding a fourth ice class (frozen dropshail). This new 4ICE scheme was developed and tested in the Goddard Cumulus Ensemble (GCE) model for an intense continental squall line and a moderate, less organized continental case. Simulated peak radar reflectivity profiles were improved in intensity and shape for both cases, as were the overall reflectivity probability distributions versus observations. In this study, the new Goddard 4ICE scheme is implemented into the regional-scale NASA Unified-Weather Research and Forecasting (NU-WRF) model, modified and evaluated for the same intense squall line, which occurred during the Midlatitude Continental Convective Clouds Experiment (MC3E). NU-WRF simulated radar reflectivities, total rainfall, propagation, and convective system structures using the 4ICE scheme modified herein agree as well as or significantly better with observations than the original 4ICE and two previous 3ICE (graupel or hail) versions of the Goddard microphysics. With the modified 4ICE, the bin microphysics-based rain evaporation correction improves propagation and in conjunction with eliminating the unrealistic dry collection of icesnow by hail can replicate the erect, narrow, and intense convective cores. Revisions to the ice supersaturation, ice number concentration formula, and snow size mapping, including a new snow breakup effect, allow the modified 4ICE to produce a stronger, better organized system, more snow, and mimic the strong aggregation signature in the radar distributions. NU-WRF original 4ICE simulated radar reflectivity distributions are consistent with and generally superior to those using the GCE due to the less restrictive domain and lateral boundaries.

Reaction Dynamics Following Ionization of Ammonia Dimer Adsorbed on Ice Surface.

PubMed

Tachikawa, Hiroto

2016-09-22

The ice surface provides an effective two-dimensional reaction field in interstellar space. However, how the ice surface affects the reaction mechanism is still unknown. In the present study, the reaction of an ammonia dimer cation adsorbed both on water ice and cluster surface was theoretically investigated using direct ab initio molecular dynamics (AIMD) combined with our own n-layered integrated molecular orbital and molecular mechanics (ONIOM) method, and the results were compared with reactions in the gas phase and on water clusters. A rapid proton transfer (PT) from NH3(+) to NH3 takes place after the ionization and the formation of intermediate complex NH2(NH4(+)) is found. The reaction rate of PT was significantly affected by the media connecting to the ammonia dimer. The time of PT was calculated to be 50 fs (in the gas phase), 38 fs (on ice), and 28-33 fs (on water clusters). The dissociation of NH2(NH4(+)) occurred on an ice surface. The reason behind the reaction acceleration on an ice surface is discussed.

Entropic Description of Gas Hydrate Ice-Liquid Equilibrium via Enhanced Sampling of Coexisting Phases

NASA Astrophysics Data System (ADS)

Małolepsza, Edyta; Kim, Jaegil; Keyes, Tom

2015-05-01

Metastable β ice holds small guest molecules in stable gas hydrates, so its solid-liquid equilibrium is of interest. However, aqueous crystal-liquid transitions are very difficult to simulate. A new molecular dynamics algorithm generates trajectories in a generalized N P T ensemble and equilibrates states of coexisting phases with a selectable enthalpy. With replicas spanning the range between β ice and liquid water, we find the statistical temperature from the enthalpy histograms and characterize the transition by the entropy, introducing a general computational procedure for first-order transitions.

Entropic description of gas hydrate ice/liquid equilibrium via enhanced sampling of coexisting phases

DOE PAGES

Malolepsza, Edyta; Kim, Jaegil; Keyes, Tom

2015-04-28

Metastable β ice holds small guest molecules in stable gas hydrates, so its solid/liquid equilibrium is of interest. However, aqueous crystal/liquid transitions are very difficult to simulate. A new MD algorithm generates trajectories in a generalized NPT ensemble and equilibrates states of coexisting phases with a selectable enthalpy. Furthermore, with replicas spanning the range between β ice and liquid water we find the statistical temperature from the enthalpy histograms and characterize the transition by the entropy, introducing a general computational procedure for first-order transitions.

Flow of ices in the Ammonia-Water System

NASA Technical Reports Server (NTRS)

Durham, W. B.; Kirby, S. H.; Stern, L. A.

1993-01-01

We have fabricated in the laboratory and subsequently deformed crystalline hydrates and partial melts of the water-rich end of the NH3-H2O system, with the aim of improving our understanding of physical processes occurring in icy moons of the outer solar system. Deformation experiments were carried out at constant strain rate. The range of experimental variables are given. Phase relationships in the NH3-H2O system indicate that water ice and ammonia dihydrate, NH3-2H2O, are the stable phases under our experiment conditions. X-ray diffraction of our samples usually revealed these as the dominant phases, but we have also observed an amorphous phase (in unpressurized samples only) and occasionally significant ammonia monohydrate, NH3-H2O. The onset of partial melting at the peritectic temperature at about 176 K appeared as a sharp transition in strength observed in samples of x(sub NH3) = 0.05 and 0.01, the effect of melt was less pronounced. For any given water ice + dihydrate alloy in the subsolidus region, we observed one rheological law over the entire temperature range from 175 K to about 140 K. Below 140 K, a shear instability similar to that occurring in pure water ice under the same conditions limited our ability to measure ductile flow. The rheological laws for the several alloys vary systematically from that of pure ice to that of dihydrate. Pure dihydrate is about 4 orders of magnitude less viscous than water ice just below the peritectic temperature, but because of a very pronounced temperature dependence in dihydrate (100 kJ/mol versus 43 kJ/mol for water ice) the viscosity of dihydrate equals or exceeds that of water ice at T less than 140 K. The large variation in viscosity of dihydrate with relatively small changes in temperature may be helpful in explaining the rich variety of tectonic and volcanic features seen on the surfaces of icy moons in the outer solar system.

An overview of the Ice Nuclei Research Unit Jungfraujoch/Cloud and Aerosol Characterization Experiment 2013 (INUIT-JFJ/CLACE-2013)

NASA Astrophysics Data System (ADS)

Schneider, Johannes

2014-05-01

Ice formation in mixed phase tropospheric clouds is an essential prerequisite for the formation of precipitation at mid-latitudes. Ice formation at temperatures warmer than -35°C is only possible via heterogeneous ice nucleation, but up to now the exact pathways of heterogeneous ice formation are not sufficiently well understood. The research unit INUIT (Ice NUcleation research unIT), funded by the Deutsche Forschungsgemeinschaft (DFG FOR 1525) has been established in 2012 with the objective to investigate heterogeneous ice nucleation by combination of laboratory studies, model calculation and field experiments. The main field campaign of the INUIT project (INUIT-JFJ) was conducted at the High Alpine Research Station Jungfraujoch (Swiss Alps, 3580 m asl) during January and February 2013, in collaboration with several international partners in the framework of CLACE2013. The instrumentation included a large set of aerosol chemical and physical analysis instruments (particle counters, particle sizers, particle mass spectrometers, cloud condensation nuclei counters, ice nucleus counters etc.), that were operated inside the Sphinx laboratory and sampled in mixed phase clouds through two ice selective inlets (Ice-CVI, ISI) as well as through a total aerosol inlet that was used for out-of-cloud aerosol measurements. Besides the on-line measurements, also samples for off-line analysis (ESEM, STXM) have been taken in and out of clouds. Furthermore, several cloud microphysics instruments were operated outside the Sphinx laboratory. First results indicate that a large fraction of ice residues sampled from mixed phase clouds contain organic material, but also mineral dust. Soot and lead were not found to be enriched in ice residues. The concentration of heterogeneous ice nuclei was found to be variable (ranging between < 1 and > 100 per liter) and to be strongly dependent on the operating conditions of the respective IN counter. The number size distribution of ice residues appears to show a bimodal distribution with a smaller mode having a modal diameter around 200 nm and a coarse mode at around 2 µm. During the cloud events evaluated so far, agreement between the number concentration of ice residues sampled through the Ice-CVI and the measured concentration of small ice crystals measured outside the laboratory could be achieved. The shape of small ice crystals was found to be mainly irregular. We acknowledge the International Foundation High Altitude Research Stations Jungfraujoch and Gornergrat (HFSJG), the help of the custodians at the Jungfraujoch station, and the funding by DFG (FOR 1525) and the federal state Hessen ("LOEWE-Schwerpunkt AmbiProbe").

Mid- and far-infrared spectroscopic studies of the influence of temperature, ultraviolet photolysis and ion irradiation on cosmic-type ices.

PubMed

Moore, M H; Hudson, R L; Gerakines, P A

2001-03-15

Infrared (IR) studies of laboratory ices can provide information on the evolution of cosmic-type ices as a function of different simulated space environments involving thermal, ultraviolet (UV), or ion processing. Laboratory radiation experiments can lead to the formation of complex organic molecules. However, because of our lack of knowledge about UV photon and ion fluxes, and exposure lifetimes, it is not certain how well our simulations represent space conditions. Appropriate laboratory experiments are also limited by the absence of knowledge about the composition, density, and temperature of ices in different regions of space. Our current understanding of expected doses due to UV photons and cosmic rays is summarized here, along with an inventory of condensed-phase molecules identified on outer solar system surfaces, comets and interstellar grains. Far-IR spectra of thermally cycled H2O are discussed since these results reflect the dramatic difference between the amorphous and crystalline phases of H2O ice, the most dominant condensed-phase molecule in cosmic ices. A comparison of mid-IR spectra of products in proton-irradiated and UV-photolyzed ices shows that few differences are observed for these two forms of processing for the simple binary mixtures studied to date. IR identification of radiation products and experiments to determine production rates of new molecules in ices during processing are discussed. A new technique for measuring intrinsic IR band strengths of several unstable molecules is presented. An example of our laboratory results applied to Europa observations is included.

Solid/liquid phase diagram of the ammonium sulfate/glutaric acid/water system.

PubMed

Beyer, Keith D; Pearson, Christian S; Henningfield, Drew S

2013-05-02

We have studied the low temperature phase diagram and water activities of the ammonium sulfate/glutaric acid/water system using differential scanning calorimetry, infrared spectroscopy of thin films, and a new technique: differential scanning calorimetry-video microscopy. Using these techniques, we have determined that there is a temperature-dependent kinetic effect to the dissolution of glutaric acid in aqueous solution. We have mapped the solid/liquid ternary phase diagram, determined the water activities based on the freezing point depression, and determined the ice/glutaric acid phase boundary as well as the ternary eutectic composition and temperature. We have also modified our glutaric acid/water binary phase diagram previously published based on these new results. We compare our results for the ternary system to the predictions of the Extended AIM Aerosol Thermodynamics Model (E-AIM), and find good agreement for the ice melting points in the ice primary phase field of this system; however, significant differences were found with respect to phase boundaries, concentration and temperature of the ternary eutectic, and glutaric acid dissolution.

Mixed phase clouds: observations and theoretical advances (overview)

NASA Astrophysics Data System (ADS)

Korolev, Alexei

2013-04-01

Mixed phase clouds play important role in precipitation formation and radiation budget of the Earth. The microphysical measurements in mixed phase clouds are notoriously difficult due to many technical challenges. The airborne instrumentation for characterization of the microstructure of mixed phase clouds is discussed. The results multiyear airborne observations and measurements of frequency of occurrence of mixed phase, characteristic spatial scales, humidity in mixed phase and ice clouds are presented. A theoretical framework describing the thermodynamics and phase transformation of a three phase component system consisting of ice particles, liquid droplets and water vapor is discussed. It is shown that the Wegener-Bergeron-Findeisen process plays different role in clouds with different dynamics. The problem of maintenance and longevity of mixed phase clouds is discussed.

Advanced instrumentation for aircraft icing research

NASA Technical Reports Server (NTRS)

Bachalo, W.; Smith, J.; Rudoff, R.

1990-01-01

A compact and rugged probe based on the phase Doppler method was evaluated as a means for characterizing icing clouds using airborne platforms and for advancing aircraft icing research in large scale wind tunnels. The Phase Doppler Particle Analyzer (PDPA) upon which the new probe was based is now widely recognized as an accurate method for the complete characterization of sprays. The prototype fiber optic-based probe was evaluated in simulated aircraft icing clouds and found to have the qualities essential to providing information that will advance aircraft icing research. Measurement comparisons of the size and velocity distributions made with the standard PDPA and the fiber optic probe were in excellent agreement as were the measurements of number density and liquid water content. Preliminary testing in the NASA Lewis Icing Research Tunnel (IRT) produced reasonable results but revealed some problems with vibration and signal quality at high speeds. The cause of these problems were identified and design changes were proposed to eliminate the shortcomings of the probe.

Performance of the Phase Doppler Particle Analyzer icing cloud droplet sizing probe in the NASA Lewis Icing Research Tunnel

NASA Technical Reports Server (NTRS)

Rudoff, R. C.; Bachalo, E. J.; Bachalo, W. D.; Oldenburg, J. R.

1992-01-01

The design, development, and testing of an icing cloud droplet sizing probe based upon the Phase Doppler Particle Analyzer (PDPA) are discussed. This probe is an in-situ laser interferometry based single particle measuring device capable of determining size distributions. The probe is designed for use in harsh environments such as icing tunnels and natural icing clouds. From the measured size distribution, Median Volume Diameter (MVD) and Liquid Water Content (LWC) may be determined. Both the theory of measurement and the mechanical aspects of the probe design and development are discussed. The MVD results from the probe are compared to an existing calibration based upon different instruments in a series of tests in the NASA Lewis Icing Research Tunnel. Agreement between the PDPA probe and the existing calibration is close for MVDs between 15 to 30 microns, but the PDPA results are considerably smaller for MVDs under 15 microns.

Radiostratigraphy and age structure of the Greenland Ice Sheet

PubMed Central

MacGregor, Joseph A; Fahnestock, Mark A; Catania, Ginny A; Paden, John D; Prasad Gogineni, S; Young, S Keith; Rybarski, Susan C; Mabrey, Alexandria N; Wagman, Benjamin M; Morlighem, Mathieu

2015-01-01

Several decades of ice-penetrating radar surveys of the Greenland and Antarctic ice sheets have observed numerous widespread internal reflections. Analysis of this radiostratigraphy has produced valuable insights into ice sheet dynamics and motivates additional mapping of these reflections. Here we present a comprehensive deep radiostratigraphy of the Greenland Ice Sheet from airborne deep ice-penetrating radar data collected over Greenland by The University of Kansas between 1993 and 2013. To map this radiostratigraphy efficiently, we developed new techniques for predicting reflection slope from the phase recorded by coherent radars. When integrated along track, these slope fields predict the radiostratigraphy and simplify semiautomatic reflection tracing. Core-intersecting reflections were dated using synchronized depth-age relationships for six deep ice cores. Additional reflections were dated by matching reflections between transects and by extending reflection-inferred depth-age relationships using the local effective vertical strain rate. The oldest reflections, dating to the Eemian period, are found mostly in the northern part of the ice sheet. Within the onset regions of several fast-flowing outlet glaciers and ice streams, reflections typically do not conform to the bed topography. Disrupted radiostratigraphy is also observed in a region north of the Northeast Greenland Ice Stream that is not presently flowing rapidly. Dated reflections are used to generate a gridded age volume for most of the ice sheet and also to determine the depths of key climate transitions that were not observed directly. This radiostratigraphy provides a new constraint on the dynamics and history of the Greenland Ice Sheet. Key Points Phase information predicts reflection slope and simplifies reflection tracing Reflections can be dated away from ice cores using a simple ice flow model Radiostratigraphy is often disrupted near the onset of fast ice flow PMID:26213664

Possible Role of Ice in the Synthesis of Polymeric Compounds

NASA Astrophysics Data System (ADS)

Monnard, Pierre-Alain; Doerr, Mark; Loeffler, Philipp, M. G.

COSPAR Session F3.6, Bremen July 18-25, 2010 Possible role of ice in the synthesis of polymeric compounds Doerr, Mark, Loeffler, Philipp M.G and Monnard, Pierre-Alain, University of Southern Den-mark, FLinT Center, Odense M, Denmark. Email: monnard@ifk.sdu.dk Cellular life relies on a collection of linear polymers (among them DNA, RNA, proteins) to perform the functions necessary to its survival. It seems likely that catalytic and informational polymers played essential roles in the emergence of the first living entities, precursors of con-temporary cells. Thus, their detection on other planetary bodies might hint at either emerging, or extant, or past life in these environments. A non-enzymatic synthesis of such polymeric materials or their precursors likely had to rely on a supply of monomers dissolved at low concentrations in an aqueous medium. An aqueous environment represents a clear hurdle to the synthesis of long polymers as it tends to inhibit polymerization due to entropic effects and favors the reverse reaction (decomposition by hy-drolysis). It was therefore proposed that polymerization could occur in a distinct micro-or nanostructured environment that would permit a local increase in the monomer concentration, reduce water activity and protect monomers and polymers from hydrolysis. Several types of micro-or nanostructured environments, among them mineral surfaces [1], lattices of organic molecules, such as amphiphile bilayer structures [2], and the eutectic phase in water-ice [3-8] have been proposed to promote RNA and peptide formation. This last environment might be of particular interest since space exploration has established that water exists on Mars, Europa, Enceladus and comets, mostly as ice. Ice deposits may also have existed on the early Earth. When an aqueous solution is cooled below its freezing point, but above the eutectic point, two aqueous phases co-exist and form the eutectic phase system: a solid (the ice crystals made of pure water) and a liquid phase containing most solutes. The role of water likely extends beyond that of a simple chemical liquid medium since the surfaces of ice crystals could act as a substrate on which other reactants can attach and/or become aligned. The emergence of a polymer-based genetic or/and catalytic system, as it for example according to the "RNA World hypothesis" states, initially requires the synthesis of monomers followed by three non-enzymatic processes: polymerization of monomers; elongation of existing polymers with monomers or short oligomers; and replication of existing polymers in a template-directed fashion. Ideally, these processes should take place efficiently, using simple metal ions as cat-alysts. However, in a dilute solution, even when using activated monomers, these chemical processes occur very slowly, if at all. We have been exploring the plausibility of chemical reactions, such as non-enzymatic nucleotide condensations forming RNA, under cold environmental conditions and found that the polymer-ization of RNA from imidazole-activated ribonucleotides can proceed efficiently in the eutectic phase in water-ice when metal ions are available as catalysts [4]. Starting from monomer mix-tures, polymers up to 30 monomeric units in length can be readily formed [5]. Longer polymers can be obtained by adding freshly activated monomers or short oligomers to a solution over several freeze-thawing cycles. Depending on their sequences, oligomers can be elongated using monomers to obtain up to a 45-mer. Furthermore, the decomposition of the longer chains remained low. By using activated short oligomers, even longer polymers can be formed [6]. Studying RNA template-directed RNA polymerization under these conditions, we established-discovered that the initial elongation rates depended on the complementarity of the monomers with the templating nucleobases. That is, the polymerization rates for all four nucleobases op-positepairing with their corresponding Watson-Crick base-pairing nucleobase were higher than in non-base-pairing systems cases where hydrogen bond based pairing is not favoured [7]-this was even the found for low H-bridging uridine monomers [7, 8]. The presence of templates fur-ther allows the synthesis of long complementary strands [9]. Thus, template-directed elongation of RNA in the eutectic phase of the water-ice system seems possible. Recently, Miller's group [10, 11] in San Diego further established that dilute solutions of ammo-nium cyanide maintained frozen at -78 C could promote the synthesis of nucleobases, although with rather low yields. The catalytic activity of a RNA-ligase ribozyme was also detected in the eutectic phase [12]. All the observations on the promotion of synthetic reactions in the eutectic phase in water-ice suggest that the cold conditions with transient thawing periods could have allowed the formation of RNA monomers on our Earth and possibly on other icy planets. [1] Ferris, J. P. Phil. Trans. R. Soc. B, 2006, 361, 1777. [2] Rajamani, S.; Vlassov, A.; Coombs, A.; F., O.; Deamer, D. W. Orig Life Evol Biosph, accepted2008, 38, 57. [3] Bada, J. L.; Bigham, C.; Miller, S. L. Proc. Nat. Acad Sci USA, 1994, 91, 1248. [4] Kanavarioti, A.; Monnard, P.-A.; Deamer, D. W. Astrobiology, 2001, 1, 271. [5] Monnard, P.-A.; Kanavarioti, A.; Deamer, D. W. J. Am. Chem. Soc., 2003, 125, 13734. [6] Dürr, M and Monnard, P.-A. in preparation. [7] Monnard, P.-A.; Szostak, J. W. J. Inorg. Biochem., 2008, 112, 1104. [8] Vogel, S. R.; Richert, C. Chem Commun (Camb), 2007, 1896. [9] Trinks, H.; Schroder, W.; Biebricher, C. K. Orig Life Evol Biosph, 2005, 35, 429. [10] Miyakawa, S.; Cleaves, H. J.; Miller, S. L. Orig. Life Evol Biosphere, 2002, 32, 195. [11] Miyakawa, S.; Cleaves, H. J.; Miller, S. L. Orig. Life Evol Biosphere, 2002, 32, 209. [12] Vlassov, A.; Johnston, B. H.; Landweber, L. F.; Kazakov, S. A. Nucl. Acids. Res., 2004, 32, 2966.

Regulated Eukaryotic DNA Replication Origin Firing with Purified Proteins

PubMed Central

Yeeles, Joseph T.P.; Deegan, Tom D.; Janska, Agnieszka; Early, Anne; Diffley, John F. X.

2016-01-01

Eukaryotic cells initiate DNA replication from multiple origins, which must be tightly regulated to promote precise genome duplication in every cell cycle. To accomplish this, initiation is partitioned into two temporally discrete steps: a double hexameric MCM complex is first loaded at replication origins during G1 phase, and then converted to the active CMG (Cdc45, MCM, GINS) helicase during S phase. Here we describe the reconstitution of budding yeast DNA replication initiation with 16 purified replication factors, made from 42 polypeptides. Origin-dependent initiation recapitulates regulation seen in vivo. Cyclin dependent kinase (CDK) inhibits MCM loading by phosphorylating the origin recognition complex (ORC) and promotes CMG formation by phosphorylating Sld2 and Sld3. Dbf4 dependent kinase (DDK) promotes replication by phosphorylating MCM, and can act either before or after CDK. These experiments define the minimum complement of proteins, protein kinase substrates and co-factors required for regulated eukaryotic DNA replication. PMID:25739503

Regulated eukaryotic DNA replication origin firing with purified proteins.

PubMed

Yeeles, Joseph T P; Deegan, Tom D; Janska, Agnieszka; Early, Anne; Diffley, John F X

2015-03-26

Eukaryotic cells initiate DNA replication from multiple origins, which must be tightly regulated to promote precise genome duplication in every cell cycle. To accomplish this, initiation is partitioned into two temporally discrete steps: a double hexameric minichromosome maintenance (MCM) complex is first loaded at replication origins during G1 phase, and then converted to the active CMG (Cdc45-MCM-GINS) helicase during S phase. Here we describe the reconstitution of budding yeast DNA replication initiation with 16 purified replication factors, made from 42 polypeptides. Origin-dependent initiation recapitulates regulation seen in vivo. Cyclin-dependent kinase (CDK) inhibits MCM loading by phosphorylating the origin recognition complex (ORC) and promotes CMG formation by phosphorylating Sld2 and Sld3. Dbf4-dependent kinase (DDK) promotes replication by phosphorylating MCM, and can act either before or after CDK. These experiments define the minimum complement of proteins, protein kinase substrates and co-factors required for regulated eukaryotic DNA replication.

Outreach/education interface for Cryosphere models using the Virtual Ice Sheet Laboratory

NASA Astrophysics Data System (ADS)

Larour, E. Y.; Halkides, D. J.; Romero, V.; Cheng, D. L.; Perez, G.

2014-12-01

In the past decade, great strides have been made in the development of models capable of projecting the future evolution of glaciers and the polar ice sheets in a changing climate. These models are now capable of replicating some of the trends apparent in satellite observations. However, because this field is just now maturing, very few efforts have been dedicated to adapting these capabilities to education. Technologies that have been used in outreach efforts in Atmospheric and Oceanic sciences still have not been extended to Cryospheric Science. We present a cutting-edge, technologically driven virtual laboratory, geared towards outreach and k-12 education, dedicated to the polar ice sheets on Antarctica and Greenland, and their role as major contributors to sea level rise in coming decades. VISL (Virtual Ice Sheet Laboratory) relies on state-of-the art Web GL rendering of polar ice sheets, Android/iPhone and web portability using Javascript, as well as C++ simulations (back-end) based on the Ice Sheet System Model, the NASA model for simulating the evolution of polar ice sheets. Using VISL, educators and students can have an immersive experience into the world of polar ice sheets, while at the same exercising the capabilities of a state-of-the-art climate model, all of it embedded into an education experience that follows the new STEM standards for education.This work was performed at the California Institute of Technology's Jet Propulsion Laboratory under a contract with the National Aeronautics and Space Administration's Cryosphere Science Program.

Ice polyamorphism in the minimal Mercedes-Benz model of water.

PubMed

Cartwright, Julyan H E; Piro, Oreste; Sánchez, Pedro A; Sintes, Tomás

2012-12-28

We investigate ice polyamorphism in the context of the two-dimensional Mercedes-Benz model of water. We find a first-order phase transition between a crystalline phase and a high-density amorphous phase. Furthermore, we find a reversible transformation between two amorphous structures of high and low density; however, we find this to be a continuous and not an abrupt transition, as the low-density amorphous phase does not show structural stability. We discuss the origin of this behavior and its implications with regard to the minimal generic modeling of polyamorphism.

Ice polyamorphism in the minimal Mercedes-Benz model of water

NASA Astrophysics Data System (ADS)

Cartwright, Julyan H. E.; Piro, Oreste; Sánchez, Pedro A.; Sintes, Tomás

2012-12-01

We investigate ice polyamorphism in the context of the two-dimensional Mercedes-Benz model of water. We find a first-order phase transition between a crystalline phase and a high-density amorphous phase. Furthermore, we find a reversible transformation between two amorphous structures of high and low density; however, we find this to be a continuous and not an abrupt transition, as the low-density amorphous phase does not show structural stability. We discuss the origin of this behavior and its implications with regard to the minimal generic modeling of polyamorphism.

Glacial geology of the Shingobee River headwaters area, north-central Minnesota

USGS Publications Warehouse

Melchior, Robert C.

2014-01-01

During middle and late Wisconsin time in the Shingobee River headwaters area, the Laurentide Wadena lobe, Hewitt and Itasca phases, produced terminal and ground moraine along with a variety of associated glacial features. The stratigraphic record is accessible and provides details of depositional mode as well as principal glacial events during the advance and retreat of middle and late Wisconsin ice tongues. Geomorphic features such as tunnel valleys, stream terraces, and postglacial stream cuts formed by erosional events persist to the present day. Middle Wisconsin Hewitt phase deposits are the oldest and include drumlins, ground moraine, boulder pavements, and outwash. Together, these deposits suggest a wet-based, periodically surging glacier in a subpolar thermal state. Regional permafrost and deposition from retreating ice are inferred between the end of the Hewitt phase and the advance of late Wisconsin Itasca phase ice. Itasca phase glaciation occurred as a contemporaneous pair of adjacent ice tongues whose contrasting moraine styles suggest independent flow modes. The western (Shingobee) portion of the Itasca moraine contains composite ridges, permafrost phenomena, hill-hole pairs, and debris flows. By contrast, eastern (Onigum) moraine deposits generally lack glaciotectonic features and consist almost exclusively of mud and debris flows. Near the end of the Itasca phase, large-scale hill-hole pairs developed in the Shingobee division, and debris flows from the Onigum division blocked the preexisting Shingobee tunnel valley to form glacial lake Willobee. Postglacial streams formed deep valleys as glacial lake Willobee catastrophically drained. Dates based on temperature trends in Greenland ice cores are proposed for prominent glacial events in the Shingobee area. This report proposes that Hewitt phase glaciation occurred between 27.2 and 23.6 kiloannum and Itasca phase glaciation between 22.8 and 14.7 kiloannum. Des Moines lobe (Younger Dryas) glaciation, which had only secondary effects on the Shingobee headwaters area, occurred between 13.5 and 11.6 kiloannum.

Dynamic Nucleation of Ice Induced by a Single Stable Cavitation Bubble

NASA Technical Reports Server (NTRS)

Ohsaka, Kenichi; Trinh, Eugene H.

1997-01-01

Dynamic nucleation of ice induced by caviation bubble in undercooled water is observed using an acoustic levitation technique. The observation indicates that a high pressure pulse associated with a collapsing bubble is indeed responsible for the nucleation of a high pressure phase of ice.

Submillimeter Measurements of Photolysis Products in Interstellar Ice Analogs: A New Experimental Technique

NASA Technical Reports Server (NTRS)

Milam, Stefanie N.; Weaver, Susanna Widicus

2012-01-01

Over 150 molecular species have been confirmed in space, primarily by their rotational spectra at millimeter/submillimeter wavelengths, which yield an unambiguous identification. Many of the known interstellar organic molecules cannot be explained by gas-phase chemistry. It is now presumed that they are produced by surface reactions of the simple ices and/or grains observed and released into the gas phase by sublimation, sputtering, etc. Additionally, the chemical complexity found in meteorites and samples returned from comets far surpasses that of the remote detections for the interstellar medium (ISM), comets, and planetary atmospheres. Laboratory simulations of interstellar/cometary ices have found, from the analysis of the remnant residue of the warmed laboratory sample, that such molecules are readily formed; however, it has yet to be determined if they are formed during the warm phase or within the ice during processing. Most analysis of the ice during processing reveals molecular changes, though the exact quantities and species formed are highly uncertain with current techniques due to overwhelming features of simple ices. Remote sensing with high resolution spectroscopy is currently the only method to detect trace species in the ISM and the primary method for comets and icy bodies in the Solar System due to limitations of sample return. We have recently designed an experiment to simulate interstellar/cometary/planetary ices and detect trace species employing the same techniques used for remote observations. Preliminary results will be presented.

Extensive degeneracy, Coulomb phase and magnetic monopoles in artificial square ice.

PubMed

Perrin, Yann; Canals, Benjamin; Rougemaille, Nicolas

2016-12-15

Artificial spin-ice systems are lithographically patterned arrangements of interacting magnetic nanostructures that were introduced as way of investigating the effects of geometric frustration in a controlled manner. This approach has enabled unconventional states of matter to be visualized directly in real space, and has triggered research at the frontier between nanomagnetism, statistical thermodynamics and condensed matter physics. Despite efforts to create an artificial realization of the square-ice model-a two-dimensional geometrically frustrated spin-ice system defined on a square lattice-no simple geometry based on arrays of nanomagnets has successfully captured the macroscopically degenerate ground-state manifold of the model. Instead, square lattices of nanomagnets are characterized by a magnetically ordered ground state that consists of local loop configurations with alternating chirality. Here we show that all of the characteristics of the square-ice model are observed in an artificial square-ice system that consists of two sublattices of nanomagnets that are vertically separated by a small distance. The spin configurations we image after demagnetizing our arrays reveal unambiguous signatures of a Coulomb phase and algebraic spin-spin correlations, which are characterized by the presence of 'pinch' points in the associated magnetic structure factor. Local excitations-the classical analogues of magnetic monopoles-are free to evolve in an extensively degenerate, divergence-free vacuum. We thus provide a protocol that could be used to investigate collective magnetic phenomena, including Coulomb phases and the physics of ice-like materials.

Alzheimer's Disease Sequencing Project discovery and replication criteria for cases and controls: Data from a community-based prospective cohort study with autopsy follow-up.

PubMed

Crane, Paul K; Foroud, Tatiana; Montine, Thomas J; Larson, Eric B

2017-12-01

The Alzheimer's Disease Sequencing Project (ADSP) used different criteria for assigning case and control status from the discovery and replication phases of the project. We considered data from a community-based prospective cohort study with autopsy follow-up where participants could be categorized as case, control, or neither by both definitions and compared the two sets of criteria. We used data from the Adult Changes in Thought (ACT) study including Diagnostic and Statistical Manual-IV criteria for dementia status, McKhann et al. criteria for clinical Alzheimer's disease, and Braak and Consortium to Establish a Registry for AD findings on neurofibrillary tangles and neuritic plaques to categorize the 621 ACT participants of European ancestry who died and came to autopsy. We applied ADSP discovery and replication definitions to identify controls, cases, and people who were neither controls nor cases. There was some agreement between the discovery and replication definitions. Major areas of discrepancy included the finding that only 40% of the discovery sample controls had sufficiently low levels of neurofibrillary tangles and neuritic plaques to be considered controls by the replication criteria and the finding that 16% of the replication phase cases were diagnosed with non-AD dementia during life and thus were excluded as cases for the discovery phase. These findings should inform interpretation of genetic association findings from the ADSP. Differences in genetic association findings between the two phases of the study may reflect these different phenotype definitions from the discovery and replication phase of the ADSP. Copyright © 2017 the Alzheimer's Association. Published by Elsevier Inc. All rights reserved.

Analysis of re-replication from deregulated origin licensing by DNA fiber spreading

PubMed Central

Dorn, Elizabeth S.; Chastain, Paul D.; Hall, Jonathan R.; Cook, Jeanette Gowen

2009-01-01

A major challenge each human cell-division cycle is to ensure that DNA replication origins do not initiate more than once, a phenomenon known as re-replication. Acute deregulation of replication control ultimately causes extensive DNA damage, cell-cycle checkpoint activation and cell death whereas moderate deregulation promotes genome instability and tumorigenesis. In the absence of detectable increases in cellular DNA content however, it has been difficult to directly demonstrate re-replication or to determine if the ability to re-replicate is restricted to a particular cell-cycle phase. Using an adaptation of DNA fiber spreading we report the direct detection of re-replication on single DNA molecules from human chromosomes. Using this method we demonstrate substantial re-replication within 1 h of S phase entry in cells overproducing the replication factor, Cdt1. Moreover, a comparison of the HeLa cancer cell line to untransformed fibroblasts suggests that HeLa cells produce replication signals consistent with low-level re-replication in otherwise unperturbed cell cycles. Re-replication after depletion of the Cdt1 inhibitor, geminin, in an untransformed fibroblast cell line is undetectable by standard assays but readily quantifiable by DNA fiber spreading analysis. Direct evaluation of re-replicated DNA molecules will promote increased understanding of events that promote or perturb genome stability. PMID:19010964

Analysis of the temporal program of replication initiation in yeast chromosomes.

PubMed

Friedman, K L; Raghuraman, M K; Fangman, W L; Brewer, B J

1995-01-01

The multiple origins of eukaryotic chromosomes vary in the time of their initiation during S phase. In the chromosomes of Saccharomyces cerevisiae the presence of a functional telomere causes nearby origins to delay initiation until the second half of S phase. The key feature of telomeres that causes the replication delay is the telomeric sequence (C(1-3)A/G(1-3)T) itself and not the proximity of the origin to a DNA end. A second group of late replicating origins has been found at an internal position on chromosome XIV. Four origins, spanning approximately 140 kb, initiate replication in the second half of S phase. At least two of these internal origins maintain their late replication time on circular plasmids. Each of these origins can be separated into two functional elements: those sequences that provide origin function and those that impose late activation. Because the assay for determining replication time is costly and laborious, it has not been possible to analyze in detail these 'late' elements. We report here the development of two new assays for determining replication time. The first exploits the expression of the Escherichia coli dam methylase in yeast and the characteristic period of hemimethylation that transiently follows the passage of a replication fork. The second uses quantitative hybridization to detect two-fold differences in the amount of specific restriction fragments as a function of progress through S phase. The novel aspect of this assay is the creation in vivo of a non-replicating DNA sequence by site-specific pop-out recombination. This non-replicating fragment acts as an internal control for copy number within and between samples. Both of these techniques are rapid and much less costly than the more conventional density transfer experiments that require CsCl gradients to detect replicated DNA. With these techniques it should be possible to identify the sequences responsible for late initiation, to search for other late replicating regions in the genome, and to begin to analyze the effect that altering the temporal program has on chromosome function.

Ice crystals classification using airborne measurements in mixing phase

NASA Astrophysics Data System (ADS)

Sorin Vajaiac, Nicolae; Boscornea, Andreea

2017-04-01

This paper presents a case study of ice crystals classification from airborne measurements in mixed-phase clouds. Ice crystal shadow is recorded with CIP (Cloud Imaging Probe) component of CAPS (Cloud, Aerosol, and Precipitation Spectrometer) system. The analyzed flight was performed in the south-western part of Romania (between Pietrosani, Ramnicu Valcea, Craiova and Targu Jiu), with a Beechcraft C90 GTX which was specially equipped with a CAPS system. The temperature, during the fly, reached the lowest value at -35 °C. These low temperatures allow the formation of ice crystals and influence their form. For the here presented ice crystals classification a special software, OASIS (Optical Array Shadow Imaging Software), developed by DMT (Droplet Measurement Technologies), was used. The obtained results, as expected are influenced by the atmospheric and microphysical parameters. The particles recorded where classified in four groups: edge, irregular, round and small.

Scavenging of acidic gases (HCOOH, CH3COOH, HNO3, HCl, and SO2) and ammonia in mixed liquid-solid water clouds at the Puy de Do‸me mountain (France)

NASA Astrophysics Data System (ADS)

Voisin, Didier; Legrand, Michel; Chaumerliac, Nadine

2000-03-01

In order to study scavenging processes of chemical species in mixed phase clouds, in-cloud field measurements were conducted in December 1997 at the Puy de Dôme mountain (center of France, 1465 m above sea level). Soluble species including NH+4, Cl-;, NO3-3, SO-4, HCOO-, CH3COO-, and C2O-4 present in the different phases (supercooled water droplets, rimed snowflakes, interstitial gases, and aerosols) of cold clouds have been investigated. Conducted in parallel to microphysical studies of clouds (liquid water and ice contents, and size distribution of hydrometeors), these chemical investigations allow us to examine the partitioning of strong (HNO3 and HCl) and weak (SO2, HCOOH, and CH3COOH) acids as well as ammonia between interstitial air and the condensed phases (liquid and solid water particles) in mixed clouds present during winter at midlatitude regions. From that, we discuss the processes by which these key atmospheric species are taken up from the gas phase by the condensed phases (liquid and ice) in these cold clouds. We examine several factors which are of importance in driving the final composition of cloud ice. They include the partitioning of species between gaseous and supercooled liquid phases, the amount of rimed ice collected by snowflakes, and the retention of gas during shock freezing of supercooled droplets onto ice particles. Strong acids (HCl and HNO3) as well as NH3, being sufficiently soluble in water, are mainly partitioned into supercooled water droplets. Furthermore, being subsaturated in liquid droplets, these species are well retained in rimed ice. For these species, riming is found to be the main process driving the final composition of snowflakes, direct incorporation from the gas phase during growth of snowflakes remaining insignificant because of low concentrations in the gas phase. For light carboxylic acids the riming process mainly determines the composition of the snowflakes, but an additional significant contribution by gas incorporation during the growth of snowflakes cannot be excluded. SO2 is also present at significant levels in the interstitial air and is poorly retained in ice during riming of supercooled water droplets. However, hydroxymethanesulfonate (HMSA) was likely present in supercooled liquid droplets, making it difficult to evaluate by which mechanism S(IV) (i.e., HMSA plus SO2) has been incorporated into snowflakes.

Global model comparison of heterogeneous ice nucleation parameterizations in mixed phase clouds

NASA Astrophysics Data System (ADS)

Yun, Yuxing; Penner, Joyce E.

2012-04-01

A new aerosol-dependent mixed phase cloud parameterization for deposition/condensation/immersion (DCI) ice nucleation and one for contact freezing are compared to the original formulations in a coupled general circulation model and aerosol transport model. The present-day cloud liquid and ice water fields and cloud radiative forcing are analyzed and compared to observations. The new DCI freezing parameterization changes the spatial distribution of the cloud water field. Significant changes are found in the cloud ice water fraction and in the middle cloud fractions. The new DCI freezing parameterization predicts less ice water path (IWP) than the original formulation, especially in the Southern Hemisphere. The smaller IWP leads to a less efficient Bergeron-Findeisen process resulting in a larger liquid water path, shortwave cloud forcing, and longwave cloud forcing. It is found that contact freezing parameterizations have a greater impact on the cloud water field and radiative forcing than the two DCI freezing parameterizations that we compared. The net solar flux at top of atmosphere and net longwave flux at the top of the atmosphere change by up to 8.73 and 3.52 W m-2, respectively, due to the use of different DCI and contact freezing parameterizations in mixed phase clouds. The total climate forcing from anthropogenic black carbon/organic matter in mixed phase clouds is estimated to be 0.16-0.93 W m-2using the aerosol-dependent parameterizations. A sensitivity test with contact ice nuclei concentration in the original parameterization fit to that recommended by Young (1974) gives results that are closer to the new contact freezing parameterization.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Charnawskas, Joseph C.; Alpert, Peter A.; Lambe, Andrew

Anthropogenic and biogenic gas emissions contribute to the formation of secondary organic aerosol (SOA). When present, soot particles from fossil-fuel combustion can acquire a coating of SOA. We investigate SOA-soot biogenic-anthropogenic interactions and their impact on ice nucleation in relation to the particles’ organic phase state. SOA particles were generated from the OH oxidation of naphthalene, α-pinene, longifolene, or isoprene, with or without presence of sulfate or soot particles. Corresponding particle glass transition (T g) and full deliquescence relative humidity (FDRH) were estimated by a numerical diffusion model. Longifolene SOA particles are solid-like and all biogenic SOA sulfate mixtures exhibitmore » a core-shell configuration (i.e. a sulfate-rich core coated with SOA). Biogenic SOA with or without sulfate formed ice at conditions expected for homogeneous ice nucleation in agreement with respective T g and FDRH. α-pinene SOA coated soot particles nucleated ice above the homogeneous freezing temperature with soot acting as ice nuclei (IN). At lower temperatures the α-pinene SOA coating can be semisolid inducing ice nucleation. Naphthalene SOA coated soot particles acted as IN above and below the homogeneous freezing limit, which can be explained by the presence of a highly viscous SOA phase. Our results suggest that biogenic SOA does not play a significant role in mixed-phase cloud formation and the presence of sulfate further renders this even less likely. Furthermore, anthropogenic SOA may have an enhancing effect on cloud glaciation under mixed-phase and cirrus cloud conditions compared to biogenic SOA that dominate during preindustrial times or in pristine areas.« less

ESR/spin probe study of ice cream.

PubMed

Gillies, Duncan G; Greenley, Katherine R; Sutcliffe, Leslie H

2006-07-12

Spin probes based on the 1,1,3,3-tetramethylisoindolin-2-yl structure have been used, in conjunction with electron spin resonance spectroscopy (ESR), to study the physical changes occurring in ice cream during freezing and melting. The ESR measurements allowed the rotational correlation times, tau(B), of the spin probes to be determined. Two probes were used together in a given sample of ice cream, namely, 1,1,3,3-tetramethylisoindolin-2-yl (TMIO), which samples the fat phase, and the sodium salt of 1,1,3,3-tetramethylisoindolin-2-yloxyl-5-sulfonate (NaTMIOS), which samples the aqueous phase. Data from the TMIO probe showed that when ice cream is cooled, the fat phase is a mixture of solid and liquid fat until a temperature of approximately -60 degrees C is reached. The water-soluble probe NaTMIOS showed that the aqueous phase changes completely from liquid to solid within 1 degrees C of -18 degrees C. On cooling further to -24.7 degrees C and then allowing it to warm to +25.0 degrees C, the rotational correlation times of the NaTMIOS were slow to recover to their previous values. For the lipid phase, tau(B)(298) was found to be 65.7 +/- 2.0 ps and the corresponding activation enthalpy, DeltaH, was 32.5 +/- 0.9 kJ mol(-)(1): These values are typical of those expected to be found in the type of fat used to make ice cream. The water phase gave corresponding values of 32.2 +/- 0.5 ps and 24.5 +/- 0.4 kJ mol(-)(1) values, which are those expected for a sucrose concentration of 24%.

Multisensor Analysis of Ice Crystals Backscatter Peak From 5 Years of Collocated POLDER, MODIS and CALIOP Observations.

NASA Astrophysics Data System (ADS)

Riedi, J.; Labonnote, L. C.; Contaut, F.; Platnick, S. E.; Yang, P.

2016-12-01

Realistic assumptions for representation of ice crystal optical properties are key in deriving meaningful information on ice clouds from spaceborne observations. With the increasing number of multi-sensor analysis it is also of paramount importance that ice crystal models be consistents for the interpretation of both passive and active observations in the solar and thermal infrared spectral domains. There has been significant evidences in the past few years that roughened particles might represent an overall good proxy for ice crystal models being able to simultaneously explain visible and infrared observations obtained from either active or passive sensors (Holz et al, 2016). Nevertheless, details of the exact phase function remain very informative fingerprints of ice crystal shapes and can also be critical parameters for retrievals performed under specific viewing geometries. Analysis of lidar observation for instance remains very sensitive to details of phase function in and around the backscatter direction. The relative magnitude and width of the backscatter peak intensity that appears in phase functions of ice crystal has been shown to carry useful information for characterization of ice crystal habits (Zhou & Yang, 2015). Based on these theoretical results we are revisiting here our previous analysis of coincident POLDER, MODIS and CALIOP observations whereby we were able to study the angular variability of ice clouds reflectance in and around the exact backscatter direction. Statistics from 5 years of observations of peak intensities derived from POLDER have been established in relation to coincident MODIS cloud optical thickness and effective radius retrievals as well as CALIOP layer integrated depolarization ratio and attenuated backscatter. Those are analyzed in view of the theoretical results from Zhou & Yang (2015). In particular, correlation of peak intensity and width with particle size retrieved from MODIS will be presented and implications for ice cloud microphysical properties and remote sensing applications will be discussed. Chen Zhou and Ping Yang : Backscattering peak of ice cloud particles, Opt. Express 23, 11995-12003 (2015) Holz, R. E. et al : Resolving ice cloud optical thickness biases between CALIOP and MODIS using infrared retrievals, Atmos. Chem. Phys., 16, 5075-5090 (2016)

Sensitivity of Pliocene ice sheets to orbital forcing

USGS Publications Warehouse

Dolan, A.M.; Haywood, A.M.; Hill, D.J.; Dowsett, H.J.; Hunter, S.J.; Lunt, D.J.; Pickering, S.J.

2011-01-01

The stability of the Earth's major ice sheets is a critical uncertainty in predictions of future climate and sea level change. One method of investigating the behaviour of the Greenland and the Antarctic ice sheets in a warmer-than-modern climate is to look back at past warm periods of Earth history, for example the Pliocene. This paper presents climate and ice sheet modelling results for the mid-Pliocene warm period (mPWP; 3.3 to 3.0 million years ago), which has been identified as a key interval for understanding warmer-than-modern climates (Jansen et al., 2007). Using boundary conditions supplied by the United States Geological Survey PRISM Group (Pliocene Research, Interpretation and Synoptic Mapping), the Hadley Centre coupled ocean–atmosphere climate model (HadCM3) and the British Antarctic Survey Ice Sheet Model (BASISM), we show large reductions in the Greenland and East Antarctic Ice Sheets (GrIS and EAIS) compared to modern in standard mPWP experiments. We also present the first results illustrating the variability of the ice sheets due to realistic orbital forcing during the mid-Pliocene. While GrIS volumes are lower than modern under even the most extreme (cold) mid-Pliocene orbit (losing at least 35% of its ice mass), the EAIS can both grow and shrink, losing up to 20% or gaining up to 10% of its present-day volume. The changes in ice sheet volume incurred by altering orbital forcing alone means that global sea level can vary by more than 25 m during the mid-Pliocene. However, we have also shown that the response of the ice sheets to mPWP orbital hemispheric forcing can be in anti-phase, whereby the greatest reductions in EAIS volume are concurrent with the smallest reductions of the GrIS. If this anti-phase relationship is in operation throughout the mPWP, then the total eustatic sea level response would be dampened compared to the ice sheet fluctuations that are theoretically possible. This suggests that maximum eustatic sea level rise does not correspond to orbital maxima, but occurs at times where the anti-phasing of Northern and Southern Hemisphere ice sheet retreat is minimised.

Geodynamic Modeling of Planetary Ice-Oceans: Evolution of Ice-Shell Thickness in Convecting Two-Phase Systems

NASA Astrophysics Data System (ADS)

Allu Peddinti, D.; McNamara, A. K.

2016-12-01

Along with the newly unveiled icy surface of Pluto, several icy planetary bodies show indications of an active surface perhaps underlain by liquid oceans of some size. This augments the interest to explore the evolution of an ice-ocean system and its surface implications. The geologically young surface of the Jovian moon Europa lends much speculation to variations in ice-shell thickness over time. Along with the observed surface features, it suggests the possibility of episodic convection and conduction within the ice-shell as it evolved. What factors would control the growth of the ice-shell as it forms? If and how would those factors determine the thickness of the ice-shell and consequently the heat transfer? Would parameters such as tidal heating or initial temperature affect how the ice-shell grows and to what significance? We perform numerical experiments using geodynamical models of the two-phase ice-water system to study the evolution of planetary ice-oceans such as that of Europa. The models evolve self-consistently from an initial liquid ocean as it cools with time. The effects of presence, absence and magnitude of tidal heating on ice-shell thickness are studied in different models. The vigor of convection changes as the ice-shell continues to thicken. Initial modeling results track changes in the growth rate of the ice-shell as the vigor of the convection changes. The magnitude and temporal location of the rate change varies with different properties of tidal heating and values of initial temperature. A comparative study of models is presented to demonstrate how as the ice-shell is forming, its growth rate and convection are affected by processes such as tidal heating.

TOPICAL REVIEW: Sintering and microstructure of ice: a review

NASA Astrophysics Data System (ADS)

Blackford, Jane R.

2007-11-01

Sintering of ice is driven by the thermodynamic requirement to decrease surface energy. The structural morphology of ice in nature has many forms—from snowflakes to glaciers. These forms and their evolution depend critically on the balance between the thermodynamic and kinetic factors involved. Ice is a crystalline material so scientific understanding and approaches from more conventional materials can be applied to ice. The early models of solid state ice sintering are based on power law models originally developed in metallurgy. For pressure sintering of ice, these are based on work on hot isostatic pressing of metals and ceramics. Recent advances in recognizing the grain boundary groove geometry between sintering ice particles require models that use new approaches in materials science. The newer models of sintering in materials science are beginning to incorporate more realistic processing conditions and microstructural complexity, and so there is much to be gained from applying these to ice in the future. The vapour pressure of ice is high, which causes it to sublime readily. The main mechanism for isothermal sintering of ice particles is by vapour diffusion; however other transport mechanisms certainly contribute. Plastic deformation with power law creep combined with recrystallization become important mechanisms in sintering with external pressure. Modern experimental techniques, low temperature scanning electron microscopy and x-ray tomography, are providing new insights into the evolution of microstructures in ice. Sintering in the presence of a small volume fraction of the liquid phase causes much higher bond growth rates. This may be important in natural snow which contains impurities that form a liquid phase. Knowledge of ice microstructure and sintering is beneficial in understanding mechanical behaviour in ice friction and the stability of snow slopes prone to avalanches.

Computational phase diagrams of noble gas hydrates under pressure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Teeratchanan, Pattanasak, E-mail: s1270872@sms.ed.ac.uk; Hermann, Andreas, E-mail: a.hermann@ed.ac.uk

2015-10-21

We present results from a first-principles study on the stability of noble gas-water compounds in the pressure range 0-100 kbar. Filled-ice structures based on the host water networks ice-I{sub h}, ice-I{sub c}, ice-II, and C{sub 0} interacting with guest species He, Ne, and Ar are investigated, using density functional theory (DFT) with four different exchange-correlation functionals that include dispersion effects to various degrees: the non-local density-based optPBE-van der Waals (vdW) and rPW86-vdW2 functionals, the semi-empirical D2 atom pair correction, and the semi-local PBE functional. In the He-water system, the sequence of stable phases closely matches that seen in the hydrogenmore » hydrates, a guest species of comparable size. In the Ne-water system, we predict a novel hydrate structure based on the C{sub 0} water network to be stable or at least competitive at relatively low pressure. In the Ar-water system, as expected, no filled-ice phases are stable; however, a partially occupied Ar-C{sub 0} hydrate structure is metastable with respect to the constituents. The ability of the different DFT functionals to describe the weak host-guest interactions is analysed and compared to coupled cluster results on gas phase systems.« less

Multiple functions of the S-phase checkpoint mediator.

PubMed

Tanaka, Katsunori

2010-01-01

There is mounting evidence that replication defects are the major source of spontaneous genomic instability in cells, and that S-phase checkpoints are the principal defense against such instability. The S-phase checkpoint mediator protein Mrc1/Claspin mediates the checkpoint response to replication stress by facilitating phosphorylation of effector kinase by a sensor kinase. In this review, the multiple functions and the regulation of the S-phase checkpoint mediator are discussed.

Coulombic charge ice

NASA Astrophysics Data System (ADS)

McClarty, P. A.; O'Brien, A.; Pollmann, F.

2014-05-01

We consider a classical model of charges ±q on a pyrochlore lattice in the presence of long-range Coulomb interactions. This model first appeared in the early literature on charge order in magnetite [P. W. Anderson, Phys. Rev. 102, 1008 (1956), 10.1103/PhysRev.102.1008]. In the limit where the interactions become short ranged, the model has a ground state with an extensive entropy and dipolar charge-charge correlations. When long-range interactions are introduced, the exact degeneracy is broken. We study the thermodynamics of the model and show the presence of a correlated charge liquid within a temperature window in which the physics is well described as a liquid of screened charged defects. The structure factor in this phase, which has smeared pinch points at the reciprocal lattice points, may be used to detect charge ice experimentally. In addition, the model exhibits fractionally charged excitations ±q/2 which are shown to interact via a 1/r potential. At lower temperatures, the model exhibits a transition to a long-range ordered phase. We are able to treat the Coulombic charge ice model and the dipolar spin ice model on an equal footing by mapping both to a constrained charge model on the diamond lattice. We find that states of the two ice models are related by a staggering field which is reflected in the energetics of these two models. From this perspective, we can understand the origin of the spin ice and charge ice ground states as coming from a dipolar model on a diamond lattice. We study the properties of charge ice in an external electric field, finding that the correlated liquid is robust to the presence of a field in contrast to the case of spin ice in a magnetic field. Finally, we comment on the transport properties of Coulombic charge ice in the correlated liquid phase.

Particle backscatter and relative humidity measured across cirrus clouds and comparison with microphysical cirrus modelling

NASA Astrophysics Data System (ADS)

Brabec, M.; Wienhold, F. G.; Luo, B. P.; Vömel, H.; Immler, F.; Steiner, P.; Hausammann, E.; Weers, U.; Peter, T.

2012-10-01

Advanced measurement and modelling techniques are employed to estimate the partitioning of atmospheric water between the gas phase and the condensed phase in and around cirrus clouds, and thus to identify in-cloud and out-of-cloud supersaturations with respect to ice. In November 2008 the newly developed balloon-borne backscatter sonde COBALD (Compact Optical Backscatter and AerosoL Detector) was flown 14 times together with a CFH (Cryogenic Frost point Hygrometer) from Lindenberg, Germany (52° N, 14° E). The case discussed here in detail shows two cirrus layers with in-cloud relative humidities with respect to ice between 50% and 130%. Global operational analysis data of ECMWF (roughly 1° × 1° horizontal and 1 km vertical resolution, 6-hourly stored fields) fail to represent ice water contents and relative humidities. Conversely, regional COSMO-7 forecasts (6.6 km × 6.6 km, 5-min stored fields) capture the measured humidities and cloud positions remarkably well. The main difference between ECMWF and COSMO data is the resolution of small-scale vertical features responsible for cirrus formation. Nevertheless, ice water contents in COSMO-7 are still off by factors 2-10, likely reflecting limitations in COSMO's ice phase bulk scheme. Significant improvements can be achieved by comprehensive size-resolved microphysical and optical modelling along backward trajectories based on COSMO-7 wind and temperature fields, which allow accurate computation of humidities, homogeneous ice nucleation, resulting ice particle size distributions and backscatter ratios at the COBALD wavelengths. However, only by superimposing small-scale temperature fluctuations, which remain unresolved by the numerical weather prediction models, can we obtain a satisfying agreement with the observations and reconcile the measured in-cloud non-equilibrium humidities with conventional ice cloud microphysics. Conversely, the model-data comparison provides no evidence that additional changes to ice-cloud microphysics - such as heterogeneous nucleation or changing the water vapour accommodation coefficient on ice - are required.

Search for the First-Order Liquid-to-Liquid Phase Transition in Low-Temperature Confined Water by Neutron Scattering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Sow-Hsin; Wang, Zhe; Kolesnikov, Alexander I

2013-01-01

It has been conjectured that a 1st order liquid-to-liquid (L-L) phase transition (LLPT) between high density liquid (HDL) and low density liquid (LDL) in supercooled water may exist, as a thermodynamic extension to the liquid phase of the 1st order transition established between the two bulk solid phases of amorphous ice, the high density amorphous ice (HDA) and the low density amorphous ice (LDA). In this paper, we first recall our previous attempts to establish the existence of the 1st order L-L phase transition through the use of two neutron scattering techniques: a constant Q elastic diffraction study of isobaricmore » temperature scan of the D2O density, namely, the equation of state (EOS) measurements. A pronounced density hysteresis phenomenon in the temperature scan of the density above P = 1500 bar is observed which gives a plausible evidence of crossing the 1st order L-L phase transition line above this pressure; an incoherent quasi-elastic scattering measurements of temperature-dependence of the alpha-relaxation time of H2O at a series of pressures, namely, the study of the Fragile-to-Strong dynamic crossover (FSC) phenomenon as a function of pressure which we interpreted as the results of crossing the Widom line in the one-phase region. In this new experiment, we used incoherent inelastic neutron scattering (INS) to measure the density of states (DOS) of H atoms in H2O molecules in confined water as function of temperature and pressure, through which we may be able to follow the emergence of the LDL and HDL phases at supercooled temperature and high pressures. We here report for the first time the differences of librational and translational DOSs between the hypothetical HDL and LDL phases, which are similar to the corresponding differences between the well-established HDA and LDA ices. This is plausible evidence that the HDL and LDL phases are the thermodynamic extensions of the corresponding amorphous solid water HDA and LDA ices.« less

Search for the first-order liquid-to-liquid phase transition in low-temperature confined water by neutron scattering

NASA Astrophysics Data System (ADS)

Chen, Sow-Hsin; Wang, Zhe; Kolesnikov, Alexander I.; Zhang, Yang; Liu, Kao-Hsiang

2013-02-01

It has been conjectured that a 1st order liquid-to-liquid (L-L) phase transition (LLPT) between high density liquid (HDL) and low density liquid (LDL) in supercooled water may exist, as a thermodynamic extension to the liquid phase of the 1st order transition established between the two bulk solid phases of amorphous ice, the high density amorphous ice (HDA) and the low density amorphous ice (LDA). In this paper, we first recall our previous attempts to establish the existence of the 1st order L-L phase transition through the use of two neutron scattering techniques: a constant Q elastic diffraction study of isobaric temperature scan of the D2O density, namely, the equation of state (EOS) measurements. A pronounced density hysteresis phenomenon in the temperature scan of the density above P = 1500 bar is observed which gives a plausible evidence of crossing the 1st order L-L phase transition line above this pressure; an incoherent quasi-elastic scattering measurements of temperature-dependence of the α-relaxation time of H2O at a series of pressures, namely, the study of the Fragile-to-Strong dynamic crossover (FSC) phenomenon as a function of pressure which we interpreted as the results of crossing the Widom line in the one-phase region. In this new experiment, we used incoherent inelastic neutron scattering (INS) to measure the density of states (DOS) of H atoms in H2O molecules in confined water as function of temperature and pressure, through which we may be able to follow the emergence of the LDL and HDL phases at supercooled temperature and high pressures. We here report for the first time the differences of librational and translational DOSs between the hypothetical HDL and LDL phases, which are similar to the corresponding differences between the well-established HDA and LDA ices. This is plausible evidence that the HDL and LDL phases are the thermodynamic extensions of the corresponding amorphous solid water HDA and LDA ices.

Antarctic stratospheric chemistry of chlorine nitrate, hydrogen chloride, and ice - Release of active chlorine

NASA Technical Reports Server (NTRS)

Molina, Mario J.; Tso, Tai-Ly; Molina, Luisa T.; Wang, Frank C.-Y.

1987-01-01

The reaction rate between atmospheric hydrogen chloride (HCl) and chlorine nitrate (ClONO2) is greatly enhanced in the presence of ice particles; HCl dissolves readily into ice, and the collisional reaction probability for ClONO2 on the surface of ice with HCl in the mole fraction range from about 0.003 to 0.010 is in the range from about 0.05 to 0.1 for temperatures near 200 K. Chlorine is released into the gas phase on a time scale of at most a few milliseconds, whereas nitric acid (HNO3), the other product, remains in the condensed phase. This reaction could play an important role in explaining the observed depletion of ozone over Antarctica; it releases photolytically active chlorine from its most abundant reservoir species, and it promotes the formation of HNO3 and thus removes nitrogen dioxide from the gas phase. Hence it establishes the necessary conditions for the efficient catalytic destruction of ozone by halogenated free radicals.

Laboratory Studies of Ethane Ice Relevant to Outer Solar System Surfaces

NASA Technical Reports Server (NTRS)

Moore, Marla H.; Hudson, Reggie; Raines, Lily

2009-01-01

Oort Cloud comets, as well as TNOs Makemake (2045 FYg), Quaoar, and Pluto, are known to contain ethane. However, even though this molecule is found on several outer Solar System objects relatively little information is available about its amorphous and crystalline phases. In new experiments, we have prepared ethane ices at temperatures applicable to the outer Solar System, and have heated and ion-irradiated these ices to study phase changes and ethane's radiation chemistry using mid-IR spectroscopy (2.2 - 16.6 microns). Included in our work is the meta-stable phase that exists at 35 - 55 K. These results, including newly obtained optical constants, are relevant to ground-based observational campaigns, the New Horizons mission, and supporting laboratory work. An improved understanding of solid-phase ethane may contribute to future searches for this and other hydrocarbons in the outer Solar System.

Continuous methane measurements from a late Holocene Greenland ice core: Atmospheric and in-situ signals

NASA Astrophysics Data System (ADS)

Rhodes, Rachael H.; Faïn, Xavier; Stowasser, Christopher; Blunier, Thomas; Chappellaz, Jérôme; McConnell, Joseph R.; Romanini, Daniele; Mitchell, Logan E.; Brook, Edward J.

2013-04-01

Ancient air trapped inside bubbles in ice cores can now be analysed for methane concentration utilising a laser spectrometer coupled to a continuous melter system. We present a new ultra-high resolution record of atmospheric methane variability over the last 1800 yr obtained from continuous analysis of a shallow ice core from the North Greenland Eemian project (NEEM-2011-S1) during a 4-week laboratory-based measurement campaign. Our record faithfully replicates the form and amplitudes of multi-decadal oscillations previously observed in other ice cores and demonstrates the detailed depth resolution (5.3 cm), rapid acquisition time (30 m day-1) and good long-term reproducibility (2.6%, 2σ) of the continuous measurement technique. In addition, we report the detection of high frequency ice core methane signals of non-atmospheric origin. Firstly, measurements of air from the firn-ice transition region and an interval of ice core dating from 1546-1560 AD (gas age) resolve apparently quasi-annual scale methane oscillations. Traditional gas chromatography measurements on discrete ice samples confirm these signals and indicate peak-to-peak amplitudes of ca. 22 parts per billion (ppb). We hypothesise that these oscillations result from staggered bubble close-off between seasonal layers of contrasting density during time periods of sustained multi-year atmospheric methane change. Secondly, we report the detection of abrupt (20-100 cm depth interval), high amplitude (35-80 ppb excess) methane spikes in the NEEM ice that are reproduced by discrete measurements. We show for the first time that methane spikes present in thin and infrequent layers in polar, glacial ice are accompanied by elevated concentrations of carbon- and nitrogen-based chemical impurities, and suggest that biological in-situ production may be responsible.

Experimental investigations of interaction of an air-droplet-crystal flow with a solid body in the problem of a flyer icing

NASA Astrophysics Data System (ADS)

Kashevarov, Alexey V.; Miller, Alexey B.; Potapov, Yuriy F.; Stasenko, Albert L.; Zhbanov, Vladimir A.

2018-05-01

An experimental facility for modeling of icing processes in various conditions (supercooled droplets, ice crystals and mixed-phase) is described and experimental results are presented. Some methods of icing processes characterization with non-dimensional coefficients are suggested. Theoretical model of a liquid film dynamics, mass and heat transfer during its movement on the model surface is presented. The numerical calculations of liquid film freezing and run-back ice evolution on the surface are performed.

ISDAC Microphysics

DOE Data Explorer

McFarquhar, Greg

2011-07-25

Best estimate of cloud microphysical parameters derived using data collected by the cloud microphysical probes installed on the National Research Council (NRC) of Canada Convair-580 during ISDAC. These files contain phase, liquid and ice crystal size distributions (Nw(D) and Ni(D) respectively), liquid water content (LWC), ice water content (IWC), extinction of liquid drops (bw), extinction of ice crystals (bi), effective radius of water drops (rew) and of ice crystals (rei) and median mass diameter of liquid drops (Dmml) and of ice crystals (Dmmi) at 30 second resolution.

Study of the photon-induced formation and subsequent desorption of CH3OH and H2CO in interstellar ice analogs

NASA Astrophysics Data System (ADS)

Martín-Doménech, R.; Muñoz Caro, G. M.; Cruz-Díaz, G. A.

2016-05-01

Context. Methanol and formaldehyde are two simple organic molecules that are ubiquitously detected in the interstellar medium, in both the solid and gaseous phases. An origin in the solid phase and a subsequent nonthermal desorption into the gas phase is often invoked to explain their abundances in some of the environments where they are found. Experimental simulations under astrophysically relevant conditions have been carried out in the past four decades in order to find a suitable mechanism for that process. Aims: In particular, photodesorption from pure methanol ice (and presumably from pure formaldehyde ice) has been found to be negligible in previous works, probably because both molecules are very readily dissociated by vacuum-UV photons. Therefore, we explore the in situ formation and subsequent photon-induced desorption of these species, studying the UV photoprocessing of pure ethanol ice, and a more realistic binary H2O:CH4 ice analog. Methods: Experimental simulations were performed in an ultra-high vacuum chamber. Pure ethanol and binary H2O:CH4 ice samples deposited onto an infrared transparent window at 8 K were UV-irradiated using a microwave-discharged hydrogen flow lamp. Evidence of photochemical production of these two species and subsequent UV-photon-induced desorption into the gas phase were searched for by means of a Fourier transform infrared spectrometer and a quadrupole mass spectrometer, respectively. After irradiation, ice samples were warmed up to room temperature until complete sublimation was attained for detection of volatile products. Results: Formation of CH3OH was only observed during photoprocessing of the H2O:CH4 ice analog, accounting for ~4% of the initial CH4 ice column density, but no photon-induced desorption was detected. Photochemical production of H2CO was observed in both series of experiments. Formation of formaldehyde accounted for ≤45% conversion of the initial ethanol ice, but it could not be quantified during irradiation of the binary H2O:CH4 ice analogs. Photochemidesorption of formaldehyde, I.e., photon-induced formation on the ice surface and inmediate desorption, was observed, with a yield of ~6 × 10-5 (molecules/incident photon) in the case of the pure ethanol ice experiments, and ~4.4 × 10-5 (molecules/incident photon) when the H2O:CH4 ice analogs were photoprocessed. Photoprocessing of the ice analogs lead to formation of other species. Some of them were also found to desorb upon UV irradiation. Conclusions: While certain C-bearing species, in particular H2CO, were found to desorb upon irradiation, nonthermal desorption of CH3OH was not observed. So far, there is no experimental evidence of any efficient CH3OH desorption induced by UV photons. On the other hand, the observed photon-induced desorption of H2CO could account for the total formaldehyde abundance observed in the Horsehead photodissociation-dominated region.

The Saccharomyces cerevisiae RAD9, RAD17, RAD24 and MEC3 genes are required for tolerating irreparable, ultraviolet-induced DNA damage.

PubMed Central

Paulovich, A G; Armour, C D; Hartwell, L H

1998-01-01

In wild-type Saccharomyces cerevisiae, a checkpoint slows the rate of progression of an ongoing S phase in response to exposure to a DNA-alkylating agent. Mutations that eliminate S phase regulation also confer sensitivity to alkylating agents, leading us to suggest that, by regulating the S phase rate, cells are either better able to repair or better able to replicate damaged DNA. In this study, we determine the effects of mutations that impair S phase regulation on the ability of excision repair-defective cells to replicate irreparably UV-damaged DNA. We assay survival after UV irradiation, as well as the genetic consequences of replicating a damaged template, namely mutation and sister chromatid exchange induction. We find that RAD9, RAD17, RAD24, and MEC3 are required for UV-induced (although not spontaneous) mutagenesis, and that RAD9 and RAD17 (but not REV3, RAD24, and MEC3) are required for maximal induction of replication-dependent sister chromatid exchange. Therefore, checkpoint genes not only control cell cycle progression in response to damage, but also play a role in accommodating DNA damage during replication. PMID:9725831

The Saccharomyces cerevisiae RAD9, RAD17, RAD24 and MEC3 genes are required for tolerating irreparable, ultraviolet-induced DNA damage.

PubMed

Paulovich, A G; Armour, C D; Hartwell, L H

1998-09-01

In wild-type Saccharomyces cerevisiae, a checkpoint slows the rate of progression of an ongoing S phase in response to exposure to a DNA-alkylating agent. Mutations that eliminate S phase regulation also confer sensitivity to alkylating agents, leading us to suggest that, by regulating the S phase rate, cells are either better able to repair or better able to replicate damaged DNA. In this study, we determine the effects of mutations that impair S phase regulation on the ability of excision repair-defective cells to replicate irreparably UV-damaged DNA. We assay survival after UV irradiation, as well as the genetic consequences of replicating a damaged template, namely mutation and sister chromatid exchange induction. We find that RAD9, RAD17, RAD24, and MEC3 are required for UV-induced (although not spontaneous) mutagenesis, and that RAD9 and RAD17 (but not REV3, RAD24, and MEC3) are required for maximal induction of replication-dependent sister chromatid exchange. Therefore, checkpoint genes not only control cell cycle progression in response to damage, but also play a role in accommodating DNA damage during replication.

SmaggIce 2.0: Additional Capabilities for Interactive Grid Generation of Iced Airfoils

NASA Technical Reports Server (NTRS)

Kreeger, Richard E.; Baez, Marivell; Braun, Donald C.; Schilling, Herbert W.; Vickerman, Mary B.

2008-01-01

The Surface Modeling and Grid Generation for Iced Airfoils (SmaggIce) software toolkit has been extended to allow interactive grid generation for multi-element iced airfoils. The essential phases of an icing effects study include geometry preparation, block creation and grid generation. SmaggIce Version 2.0 now includes these main capabilities for both single and multi-element airfoils, plus an improved flow solver interface and a variety of additional tools to enhance the efficiency and accuracy of icing effects studies. An overview of these features is given, especially the new multi-element blocking strategy using the multiple wakes method. Examples are given which illustrate the capabilities of SmaggIce for conducting an icing effects study for both single and multi-element airfoils.

Comparison of aerosol effects on simulated spring and summer hailstorm clouds

NASA Astrophysics Data System (ADS)

Yang, Huiling; Xiao, Hui; Guo, Chunwei; Wen, Guang; Tang, Qi; Sun, Yue

2017-07-01

Numerical simulations are carried out to investigate the effect of cloud condensation nuclei (CCN) concentrations on microphysical processes and precipitation characteristics of hailstorms. Two hailstorm cases are simulated, a spring case and a summer case, in a semiarid region of northern China, with the Regional Atmospheric Modeling System. The results are used to investigate the differences and similarities of the CCN effects between spring and summer hailstorms. The similarities are: (1) The total hydrometeor mixing ratio decreases, while the total ice-phase mixing ratio enhances, with increasing CCN concentration; (2) Enhancement of the CCN concentration results in the production of a greater amount of small-sized hydrometeor particles, but a lessening of large-sized hydrometeor particles; (3) As the CCN concentration increases, the supercooled cloud water and rainwater make a lesser contribution to hail, while the ice-phase hydrometeors take on active roles in the growth of hail; (4) When the CCN concentration increases, the amount of total precipitation lessens, while the role played by liquid-phase rainfall in the amount of total precipitation reduces, relatively, compared to that of ice-phase precipitation. The differences between the two storms include: (1) An increase in the CCN concentration tends to reduce pristine ice mixing ratios in the spring case but enhance them in the summer case; (2) Ice-phase hydrometeor particles contribute more to hail growth in the spring case, while liquid water contributes more in the summer case; (3) An increase in the CCN concentration has different effects on surface hail precipitation in different seasons.

Aerosol partitioning in natural mixed-phase clouds

NASA Astrophysics Data System (ADS)

Henning, S.; Bojinski, S.; Diehl, K.; Ghan, S.; Nyeki, S.; Weingartner, E.; Wurzler, S.; Baltensperger, U.

2004-03-01

In situ aerosol and cloud drop microphysical measurements at a high-alpine site are used to investigate aerosol partitioning between cloud and interstitial phases in natural, mid-latitude, mixed-phase clouds. Measurements indicate a decrease in the activated aerosol fraction (FN) for particle diameters dP > 100 nm with cloud temperature from FN ~ 0.54 in summer liquid-phase clouds to FN ~ 0.08 in winter mixed-phase clouds. The latter may be attributed to the Bergeron-Findeisen mechanism whereby ice crystals grow at the expense of liquid water drops, releasing formerly activated aerosols back into the interstitial phase. This provides a means to distinguish the indirect effects of aerosols on drops and ice crystals.

Characterizing the information content of cloud thermodynamic phase retrievals from the notional PACE OCI shortwave reflectance measurements

NASA Astrophysics Data System (ADS)

Coddington, O. M.; Vukicevic, T.; Schmidt, K. S.; Platnick, S.

2017-08-01

We rigorously quantify the probability of liquid or ice thermodynamic phase using only shortwave spectral channels specific to the National Aeronautics and Space Administration's Moderate Resolution Imaging Spectroradiometer, Visible Infrared Imaging Radiometer Suite, and the notional future Plankton, Aerosol, Cloud, ocean Ecosystem imager. The results show that two shortwave-infrared channels (2135 and 2250 nm) provide more information on cloud thermodynamic phase than either channel alone; in one case, the probability of ice phase retrieval increases from 65 to 82% by combining 2135 and 2250 nm channels. The analysis is performed with a nonlinear statistical estimation approach, the GEneralized Nonlinear Retrieval Analysis (GENRA). The GENRA technique has previously been used to quantify the retrieval of cloud optical properties from passive shortwave observations, for an assumed thermodynamic phase. Here we present the methodology needed to extend the utility of GENRA to a binary thermodynamic phase space (i.e., liquid or ice). We apply formal information content metrics to quantify our results; two of these (mutual and conditional information) have not previously been used in the field of cloud studies.

Spatial distribution and specification of mammalian replication origins during G1 phase

PubMed Central

Li, Feng; Chen, Jianhua; Solessio, Eduardo; Gilbert, David M.

2003-01-01

We have examined the distribution of early replicating origins on stretched DNA fibers when nuclei from CHO cells synchronized at different times during G1 phase initiate DNA replication in Xenopus egg extracts. Origins were differentially labeled in vivo versus in vitro to allow a comparison of their relative positions and spacing. With nuclei isolated in the first hour of G1 phase, in vitro origins were distributed throughout a larger number of DNA fibers and did not coincide with in vivo origins. With nuclei isolated 1 h later, a similar total number of in vitro origins were clustered within a smaller number of DNA fibers but still did not coincide with in vivo origins. However, with nuclei isolated later in G1 phase, the positions of many in vitro origins coincided with in vivo origin sites without further change in origin number or density. These results highlight two distinct G1 steps that establish a spatial and temporal program for replication. PMID:12707307

Contrail Formation in Aircraft Wakes Using Large-Eddy Simulations

NASA Technical Reports Server (NTRS)

Paoli, R.; Helie, J.; Poinsot, T. J.; Ghosal, S.

2002-01-01

In this work we analyze the issue of the formation of condensation trails ("contrails") in the near-field of an aircraft wake. The basic configuration consists in an exhaust engine jet interacting with a wing-tip training vortex. The procedure adopted relies on a mixed Eulerian/Lagrangian two-phase flow approach; a simple micro-physics model for ice growth has been used to couple ice and vapor phases. Large eddy simulations have carried out at a realistic flight Reynolds number to evaluate the effects of turbulent mixing and wake vortex dynamics on ice-growth characteristics and vapor thermodynamic properties.

UV Photodesorption of Methanol in Pure and CO-rich Ices: Desorption Rates of the Intact Molecule and of the Photofragments

NASA Astrophysics Data System (ADS)

Bertin, Mathieu; Romanzin, Claire; Doronin, Mikhail; Philippe, Laurent; Jeseck, Pascal; Ligterink, Niels; Linnartz, Harold; Michaut, Xavier; Fillion, Jean-Hugues

2016-02-01

Wavelength-dependent photodesorption rates have been determined using synchrotron radiation for condensed pure and mixed methanol ice in the 7-14 eV range. The VUV photodesorption of intact methanol molecules from pure methanol ices is found to be of the order of 10-5 molecules/photon, that is two orders of magnitude below what is generally used in astrochemical models. This rate gets even lower (<10-6 molecules/photon) when the methanol is mixed with CO molecules in the ices. This is consistent with a picture in which photodissociation and recombination processes are at the origin of intact methanol desorption from pure CH3OH ices. Such low rates are explained by the fact that the overall photodesorption process is dominated by the desorption of the photofragments CO, CH3, OH, H2CO, and CH3O/CH2OH, whose photodesorption rates are given in this study. Our results suggest that the role of the photodesorption as a mechanism to explain the observed gas phase abundances of methanol in cold media is probably overestimated. Nevertheless, the photodesorption of radicals from methanol-rich ices may stand at the origin of the gas phase presence of radicals such as CH3O, therefore, opening new gas phase chemical routes for the formation of complex molecules.

Mid-Level Mixed-Phase Cloud Properties Derived From Polarization Lidar Measurements and Model Simulations

NASA Astrophysics Data System (ADS)

Sassen, K.; Canonica, L.; James, C.; Khvorostyanov, V.

2005-12-01

Water-dominated altocumulus clouds are distributed world-wide in the middle troposphere, and so are generally supercooled clouds with variable amounts of ice production via the heterogeneous droplet freezing process, which depends on temperature and the availability of ice nuclei. Although they tend to be relatively optically thin (i.e., for water clouds) and may often act similarly to cirrus clouds, altocumulus are globally widespread and probably play a significant role in maintaining the radiation balance of the Earth/atmosphere system. We will review recent cloud microphysical/ radiative model findings describing their impact on radiation transfer, and how increasing ice content (leading to cloud glaciation) affects their radiative impact. These simulations are based on the results of a polarization lidar climatology of the macrophysical properties of midlatitude altocumulus clouds, which variably produced ice virga. A new more advanced polarization lidar algorithm for characterizing mixed-phase cloud properties is currently being developed. Relative ice content is shown to have a large effect on atmospheric heating rates. We will also present lidar data examples, from Florida to Alaska, that indicate how desert dust and forest fire smoke aerosols can affect supercooled cloud phase. Since such aerosols may be becoming increasingly prevalent due to various human activities or climate change itself, it is important to assess the potential effects of increasing ice nuclei to climate change.

Toward a more physical representation of precipitation scavenging in global chemistry models: cloud overlap and ice physics and their impact on tropospheric ozone

NASA Astrophysics Data System (ADS)

Neu, J. L.; Prather, M. J.

2011-08-01

Uptake and removal of soluble trace gases and aerosols by precipitation represents a major uncertainty in the processes that control the vertical distribution of atmospheric trace species. Model representations of precipitation scavenging vary greatly in their complexity, and most are divorced from the physics of precipitation formation and transformation. Here, we describe a new large-scale precipitation scavenging algorithm, developed for the UCI chemistry-transport model (UCI-CTM), that represents a step toward a more physical treatment of scavenging through improvements in the formulation of the removal in sub-gridscale cloudy and ambient environments and their overlap within the column as well as ice phase uptake of soluble species. The UCI algorithm doubles the lifetime of HNO3 in the upper troposphere relative to a scheme with commonly made assumptions about cloud overlap and ice uptake, and provides better agreement with HNO3 observations. We find that the process of ice phase scavenging of HNO3 is a critical component of the tropospheric O3 budget, but that differences in the formulation of ice phase removal, while generating large relative differences in HNO3 abundance, have little impact on NOx and O3. The O3 budget is much more sensitive to the lifetime of HNO4, highlighting the need for better understanding of its interactions with ice and for additional observational constraints.

Numerical simulation of flow and melting characteristics of seawater-ice crystals two-phase flow in inlet straight pipe of shell and tube heat exchanger of polar ship

NASA Astrophysics Data System (ADS)

Xu, Li; Huang, Chang-Xu; Huang, Zhen-Fei; Sun, Qiang; Li, Jie

2018-05-01

The ice crystal particles are easy to enter into the seawater cooling system of polar ship together with seawater when it sails in the Arctic. They are easy to accumulate in the pipeline, causing serious blockage of the cooling pipe. In this study, the flow and melting characteristics of ice particles-seawater two-phase flow in inlet straight pipe of shell-and-tube heat exchanger were numerically simulated by using Eulerian-Eulerian two-fluid model coupled with the interphase heat and mass transfer model. The influences of inlet ice packing factor, ice crystal particle diameter, and inlet velocity on the distribution and melting characteristics of ice crystals were investigated. The degree of asymmetry of the distribution of ice crystals in the cross section decreases gradually when the IPF changes from 5 to 15%. The volume fractions of ice crystals near the top of the outlet cross section are 19.59, 19.51, and 22.24% respectively for ice packing factor of 5, 10 and 15%. When the particle diameter is 0.5 mm, the ice crystals are gradually stratified during the flow process. With particle diameters of 1.0 and 2.0 mm, the region with the highest volume fraction of ice crystals is a small circle and the contours in the cloud map are compact. The greater the inlet flow velocity, the less stratified the ice crystals and the more obvious the turbulence on the outlet cross section. The average volume fraction of ice crystals along the flow direction is firstly rapidly reduced and then stabilized after 300 mm.

Toward the Characterization of Mixed-Phase Clouds Using Remote Sensing

NASA Astrophysics Data System (ADS)

Andronache, C.

2015-12-01

Mixed-phase clouds consist of a mixture of ice particles and liquid droplets at temperatures below 0 deg C. They are present in all seasons in many regions of the world, account for about 30% of the global cloud coverage, and are linked to cloud electrification and aircraft icing. The mix of ice particles, liquid droplets, and water vapor is unstable, and such clouds are thought to have a short lifetime. A characteristic parameter is the phase composition of mixed-phase clouds. It affects the cloud life cycle and the rate of precipitation. This parameter is important for cloud parameters retrievals by radar, lidar, and satellite and is relevant for climate modeling. The phase transformation includes the remarkable Wegener-Bergeron-Findeisen (WBF) process. The direction and the rate of the phase transformations depend on the local thermodynamic and microphysical properties. Cloud condensation nuclei (CCN) and ice nuclei (IN) particles determine to a large extent cloud microstructure and the dynamic response of clouds to aerosols. The complexity of dynamics and microphysics involved in mixed-phase clouds requires a set of observational and modeling tools that continue to be refined. Among these techniques, the remote sensing methods provide an increasing number of parameters, covering large regions of the world. Thus, a series of studies were dedicated to stratiform mixed-phase clouds revealing longer lifetime than previously thought. Satellite data and aircraft in situ measurements in deep convective clouds suggest that highly supercooled water often occurs in vigorous continental convective storms. In this study, we use cases of convective clouds to discuss the feasibility of mixed-phase clouds characterization and potential advantages of remote sensing.

POROSITY AND BAND-STRENGTH MEASUREMENTS OF MULTI-PHASE COMPOSITE ICES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bossa, Jean-Baptiste; Fransen, Coen; Cazaux, Stéphanie

2015-11-20

We use experimental mid-infrared optical constants and extended effective medium approximations to determine the porosity and the band strengths of multi-phase composite ices grown at 30 K. A set of porous H{sub 2}O:CH{sub 4} ices are taken as a prototypical example. As a benchmark and proof of concept, the stoichiometry of the ice constituents is retreived with good accuracy from the refractive indices and the extinction coefficients of the reference binary ice mixtures with known compositions. Accurate band strengths are then calculated from experimental mid-infrared spectra of complex ices. We notice that the presence of pores has only a smallmore » effect on the overall band strengths, whereas a water dilution can considerably alter them. Different levels of porosity are observed depending on the abundance of methane used as a gas contaminant premixed with water prior to background deposition. The absorption profiles are also found to vary with deposition rate. To explain this, we use Monte Carlo simulations and we observe that the deposition rate strongly affects the pore size distribution as well as the ice morphology through reorganization processes. Extrapolated to genuine interstellar ices, the methodology presented in this paper can be used to evaluate the porosity and to quantify the relative abundances from observational data.« less

In vivo dynamics of EBNA1-oriP interaction during latent and lytic replication of Epstein-Barr virus.

PubMed

Daikoku, Tohru; Kudoh, Ayumi; Fujita, Masatoshi; Sugaya, Yutaka; Isomura, Hiroki; Tsurumi, Tatsuya

2004-12-24

The Epstein-Barr virus (EBV) nuclear antigen 1 (EBNA1) is required for maintenance of the viral genome DNA during the latent phase of EBV replication but continues to be synthesized after the induction of viral productive replication. An EBV genome-wide chromatin immunoprecipitation assay revealed that EBNA1 constantly binds to oriP of the EBV genome during not only latent but also lytic infection. Although the total levels of EBNA1 proved constant throughout the latter, the levels of the oriP-bound form were increased as lytic infection proceeded. EBV productive DNA replication occurs at discrete sites in nuclei, called replication compartments, where viral replication proteins are clustered. Confocal laser microscopic analyses revealed that whereas EBNA1 was distributed broadly in nuclei as fine punctate dots during the latent phase of infection, the protein became redistributed to the viral replication compartments and localized as distinct spots within and/or nearby the compartments after the induction of lytic replication. Taking these findings into consideration, oriP regions of the EBV genome might be organized by EBNA1 into replication domains that may set up scaffolding for lytic replication and transcription.

The mammalian INO80 chromatin remodeling complex is required for replication stress recovery

PubMed Central

Vassileva, Ivelina; Yanakieva, Iskra; Peycheva, Michaela; Gospodinov, Anastas; Anachkova, Boyka

2014-01-01

A number of studies have implicated the yeast INO80 chromatin remodeling complex in DNA replication, but the function of the human INO80 complex during S phase remains poorly understood. Here, we have systematically investigated the involvement of the catalytic subunit of the human INO80 complex during unchallenged replication and under replication stress by following the effects of its depletion on cell survival, S-phase checkpoint activation, the fate of individual replication forks, and the consequences of fork collapse. We report that INO80 was specifically needed for efficient replication elongation, while it was not required for initiation of replication. In the absence of the Ino80 protein, cells became hypersensitive to hydroxyurea and displayed hyperactive ATR-Chk1 signaling. Using bulk and fiber labeling of DNA, we found that cells deficient for Ino80 and Arp8 had impaired replication restart after treatment with replication inhibitors and accumulated double-strand breaks as evidenced by the formation of γ-H2AX and Rad51 foci. These data indicate that under conditions of replication stress mammalian INO80 protects stalled forks from collapsing and allows their subsequent restart. PMID:25016522

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shephard, Jacob J.; Vickers, Martin; Salzmann, Christoph G., E-mail: c.salzmann@ucl.ac.uk

Low-density amorphous (LDA) ice is involved in critical cosmological processes and has gained prominence as one of the at least two distinct amorphous forms of ice. Despite these accolades, we still have an incomplete understanding of the structural diversity that is encompassed within the LDA state and the dynamic processes that take place upon heating LDA. Heating the high-pressure ice VIII phase at ambient pressure is a remarkable example of temperature-induced amorphisation yielding LDA. We investigate this process in detail using X-ray diffraction and Raman spectroscopy and show that the LDA obtained from ice VIII is structurally different from themore » more “traditional” states of LDA which are approached upon thermal annealing. This new structural relaxation pathway involves an increase of structural order on the intermediate range length scale. In contrast with other LDA materials the local structure is more ordered initially and becomes slightly more disordered upon annealing. We also show that the cascade of phase transitions upon heating ice VIII at ambient pressure includes the formation of ice IX which may be connected with the structural peculiarities of LDA from ice VIII. Overall, this study shows that LDA is a structurally more diverse material than previously appreciated.« less

Ultra-low rare earth element content in accreted ice from sub-glacial Lake Vostok, Antarctica

NASA Astrophysics Data System (ADS)

Gabrielli, Paolo; Planchon, Frederic; Barbante, Carlo; Boutron, Claude F.; Petit, Jean Robert; Bulat, Sergey; Hong, Sungmin; Cozzi, Giulio; Cescon, Paolo

2009-10-01

This paper reports the first rare earth element (REE) concentrations in accreted ice refrozen from sub-glacial Lake Vostok (East Antarctica). REE were determined in various sections of the Vostok ice core in order to geochemically characterize its impurities. Samples were obtained from accreted ice and, for comparison, from the upper glacier ice of atmospheric origin (undisturbed, disturbed and glacial flour ice). REE concentrations ranged between 0.8-56 pg g -1 for Ce and 0.0035-0.24 pg g -1 for Lu in glacier ice, and between <0.1-24 pg g -1 for Ce and <0.0004-0.02 pg g -1 for Lu in accreted ice. Interestingly, the REE concentrations in the upper accreted ice (AC 1; characterized by visible aggregates containing a mixture of very fine terrigenous particles) and in the deeper accreted ice (AC 2; characterized by transparent ice) are lower than those in fresh water and seawater, respectively. We suggest that such ultra-low concentrations are unlikely to be representative of the real REE content in Lake Vostok, but instead may reflect phase exclusion processes occurring at the ice/water interface during refreezing. In particular, the uneven spatial distribution (on the order of a few cm) and the large range of REE concentrations observed in AC 1 are consistent with the occurrence/absence of the aggregates in adjacent ice, and point to the presence of solid-phase concentration/exclusion processes occurring within separate pockets of frazil ice during AC 1 formation. Interestingly, if the LREE enrichment found in AC 1 was not produced by chemical fractionation occurring in Lake Vostok water, this may reflect a contribution of bedrock material, possibly in combination with aeolian dust released into the lake by melting of the glacier ice. Collectively, this valuable information provides new insight into the accreted ice formation processes, the bedrock geology of East Antarctica as well as the water chemistry and circulation of Lake Vostok.

Ultra-low rare earth element content in accreted ice from sub-glacial Lake Vostok, Antarctica

NASA Astrophysics Data System (ADS)

Barbante, C.; Gabrielli, P.; Turetta, C.; Planchon, F.; Boutron, C.; Petit, J. R.; Bulat, S.; Hong, S.; Cozzi, G.; Cescon, P.

2009-12-01

We report the first rare earth element (REE) concentrations in accreted ice refrozen from sub-glacial Lake Vostok (East Antarctica). REE were determined in various sections of the Vostok ice core in order to geochemically characterize its impurities. Samples were obtained from accreted ice and, for comparison, from the upper glacier ice of atmospheric origin (undisturbed, disturbed and glacial flour ice). REE concentrations ranged between 0.8-56 pg g-1 for Ce and 0.0035- 0.24 pg g-1 for Lu in glacier ice, and between <0.1-24 pg g-1 for Ce and <0.0004-0.02 pg g-1 for Lu in accreted ice. Interestingly, the REE concentrations in the upper accreted ice (AC1;characterized by visible aggregates containing a mixture of very fine terrigenous particles) and in the deeper accreted ice (AC2; characterized by transparent ice) are lower than those in fresh water and seawater, respectively. We suggest that such ultra-low concentrations are unlikely to be representative of the real REE content in Lake Vostok, but instead may reflect phase exclusion processes occurring at the ice/water interface during refreezing. In particular, the uneven spatial distribution (on the order of a few cm) and the large range of REE concentrations observed in AC1 are consistent with the occurrence/absence of the aggregates in adjacent ice, and point to the presence of solid-phase concentration/exclusion processes occurring within separate pockets of frazil ice during AC1 formation. Interestingly, if the LREE enrichment found in AC1 was not produced by chemical fractionation occurring in Lake Vostok water, this may reflect a contribution of bedrock material, possibly in combination with aeolian dust released into the lake by melting of the glacier ice. Collectively, this valuable information provides new insight into the accreted ice formation processes, the bedrock geology of East Antarctica as well as the water chemistry and circulation of Lake Vostok.

Evaluation of Hydrometeor Classification for Winter Mixed-Phase Precipitation Events

NASA Astrophysics Data System (ADS)

Hickman, B.; Troemel, S.; Ryzhkov, A.; Simmer, C.

2016-12-01

Hydrometeor classification algorithms (HCL) typically discriminate radar echoes into several classes including rain (light, medium, heavy), hail, dry snow, wet snow, ice crystals, graupel and rain-hail mixtures. Despite the strength of HCL for precipitation dominated by a single phase - especially warm-season classification - shortcomings exist for mixed-phase precipitation classification. Properly identifying mixed-phase can lead to more accurate precipitation estimates, and better forecasts for aviation weather and ground warnings. Cold season precipitation classification is also highly important due to their potentially high impact on society (e.g. black ice, ice accumulation, snow loads), but due to the varying nature of the hydrometeor - density, dielectric constant, shape - reliable classification via radar alone is not capable. With the addition of thermodynamic information of the atmosphere, either from weather models or sounding data, it has been possible to extend more and more into winter time precipitation events. Yet, inaccuracies still exist in separating more benign (ice pellets) from more the more hazardous (freezing rain) events. We have investigated winter mixed-phase precipitation cases which include freezing rain, ice pellets, and rain-snow transitions from several events in Germany in order to move towards a reliable nowcasting of winter precipitation in hopes to provide faster, more accurate winter time warnings. All events have been confirmed to have the specified precipitation from ground reports. Classification of the events is achieved via a combination of inputs from a bulk microphysics numerical weather prediction model and the German dual-polarimetric C-band radar network, into a 1D spectral bin microphysical model (SBC) which explicitly treats the processes of melting, refreezing, and ice nucleation to predict four near-surface precipitation types: rain, snow, freezing rain, ice pellets, rain/snow mixture, and freezing rain/pellet mixture. Evaluation of the classification is performed by means of disdrometer data, in-situ ground observations, and eye-witness reports from the European Severe Weather Database (ESWD). Additionally, a comparison to an existing radar based HCL is performed as a sanity check and a performance evaluator.

Experimental determination of ice sublimation energies

NASA Astrophysics Data System (ADS)

Luna, R.; Canto, J.; Satorre, M. A.; Domingo, M.

2011-11-01

In Astrophysics, the study of ices is important due to the wide range of scenarios in which they are present. Their physical and chemical characteristics play an important role in the study of the interstellar medium (ISM). The assessment of the energy of sublimation allows us to improve our understanding of physical and/or chemical processes that take place where ices are present. The energy of sublimation E_sub is defined as the change of energy between solid and gas phase of certain molecule. This value is important to determinate other thermodynamical parameters such as the reticular energy of ionic compounds, the energy of formation in gas phase from the energy of formation in condensed phase, or to estimate the sublimation rate, which is very important in determining the evolution of surfaces of astrophysical objects.

The quantum phase-transitions of water

NASA Astrophysics Data System (ADS)

Fillaux, François

2017-08-01

It is shown that hexagonal ices and steam are macroscopically quantum condensates, with continuous spacetime-translation symmetry, whereas liquid water is a quantum fluid with broken time-translation symmetry. Fusion and vaporization are quantum phase-transitions. The heat capacities, the latent heats, the phase-transition temperatures, the critical temperature, the molar volume expansion of ice relative to water, as well as neutron scattering data and dielectric measurements are explained. The phase-transition mechanisms along with the key role of quantum interferences and that of Hartley-Shannon's entropy are enlightened. The notions of chemical bond and force-field are questioned.

Creep of water ices at planetary conditions: A compilation

USGS Publications Warehouse

Durham, W.B.; Kirby, S.H.; Stern, L.A.

1997-01-01

Many constitutive laws for the flow of ice have been published since the advent of the Voyager explorations of the outer solar system. Conflicting data have occasionally come from different laboratories, and refinement of experimental techniques has led to the publication of laws that supersede earlier ones. In addition, there are unpublished data from ongoing research that also amend the constitutive laws. Here we compile the most current laboratory-derived flow laws for water ice phases I, II, III, V, and VI, and ice I mixtures with hard particulates. The rheology of interest is mainly that of steady state, and the conditions reviewed are the pressures and temperatures applicable to the surfaces and interiors of icy moons of the outer solar system. Advances in grain-size-dependent creep in ices I and II as well as in phase transformations and metastability under differential stress are also included in this compilation. At laboratory strain rates the several ice polymorphs are rheologically distinct in terms of their stress, temperature, and pressure dependencies but, with the exception of ice III, have fairly similar strengths. Hard particulates strengthen ice I significantly only at high particulate volume fractions. Ice III has the potential for significantly affecting mantle dynamics because it is much weaker than the other polymorphs and its region of stability, which may extend metastably well into what is nominally the ice II field, is located near likely geotherms of large icy moons. Copyright 1997 by the American Geophysical Union.

FLASHFlux Info

Atmospheric Science Data Center

2013-05-20

... Surface Emissivity Cloud Area Fraction Cloud Effective Pressure Cloud Effective Temperature Cloud Effective Height Cloud Top Pressure Cloud Base Pressure Cloud Particle Phase Liquid Water Path Ice Water Path Water Particle Radius Ice Particle ...

Lichenometry in the Cordillera Blanca, Peru: “Little Ice Age” moraine chronology

NASA Astrophysics Data System (ADS)

Solomina, Olga; Jomelli, Vincent; Kaser, Georg; Ames, Alcides; Berger, Bernhard; Pouyaud, Bernard

2007-10-01

This paper is a comparison and compilation of lichenometric and geomorphic studies performed by two independent teams in the Cordillera Blanca, Peru, in 1996 and 2002 on 66 "Little Ice Age" moraines of 14 glaciers. Using eleven new control points, we recalibrated the initial rapid growth phase of the previously established Rhizocarpon subgenus Rhizocarpon growth curve. This curve was then used to estimate the age of "Little Ice Age" moraines. The time of deposition of the most prominent and numerous terminal and lateral moraines on the Pacific-facing side of the Cordillera Blanca (between AD 1590 and AD 1720) corresponds to the coldest and wettest phase in the tropical Andes as revealed by ice-core data. Less prominent advances occurred between AD 1780 and 1880.

Experimental study of the formation processes, optical properties, and chemistry of Titan's stratospheric ice clouds as observed by Cassini CIRS

NASA Astrophysics Data System (ADS)

Nna-Mvondo, D.; Anderson, C. M.; Samuelson, R. E.

2017-12-01

Two types of cloud systems have been repeatedly observed in Titan's atmosphere since the Cassini spacecraft entered into orbit around Saturn in 2004: (1) tropospheric convective methane clouds and (2) stratospheric ice clouds. Most of the stratospheric ice clouds observed by Cassini's Composite InfraRed Spectrometer (CIRS) form as a result of vapor condensation processes from a combination of pure and mixed nitriles and hydrocarbons. Examples include the n6 band of crystalline cyanoacetylene (HC3N) at 506 cm-1 (Anderson et al., 2010 and references therein) and the CIRS-discovered co-condensed nitrile ice feature at 160 cm-1 (Anderson and Samuelson, 2011). Other CIRS-observed stratospheric ice emission features, such as the n8 band of dicyanoacetylene (C4N2) at 478 cm-1 and the Haystack emission feature at 220 cm-1, have no associated observed vapor emission features, and could therefore form through more complex chemical processes such as solid-state photochemistry as suggested by Anderson et al. (2016). In the Spectroscopy for Planetary Ices Environments (SPICE) laboratory at NASA GSFC, we are undergoing investigations of Titan's observed stratospheric ices to better understand their chemical compositions, formation mechanisms, and optical properties. We accomplish this using the SPECtroscopy of Titan-Related ice AnaLogs (SPECTRAL) high-vacuum chamber, in which we perform transmission spectroscopy of thin films of pure and mixed ices, from the near- to far-infrared (50 cm-1 to 11700 cm-1), and dose at low temperatures (30 K to 150 K), to study their spectral evolution and optical properties. Here we discuss our laboratory results obtained for various experiments containing pure and mixed nitrile ices (and some combined with benzene). The first significant result reveals that the libration mode of HCN (166 - 169 cm-1) is drastically altered by the surrounding molecules when mixing occurs in a co-condensed phase. For propionitrile ice, we observe peculiar temperature and time-driven ice phase transitions (as compared to other nitrile ices), revealed by significant spectral changes in the mid and far-IR that cease once a stable crystalline phase is achieved. Results from such experimental measurements provide crucial data to deepen our understanding of Titan's stratospheric chemistry.

Probing the Origin and Evolution of Interstellar and Protoplanetary Biogenic Molecules:A Comprehensive Survey of Interstellar Ices with SPHEREx

NASA Astrophysics Data System (ADS)

Melnick, Gary J.; SPHEREx Science Team

2016-01-01

Many of the most important building blocks of life are locked in interstellar and protoplanetary ices. Examples include H2O, CO, CO2, and CH3OH, among others. There is growing evidence that in some environments, such as within the cores of dense molecular clouds and the mid-plane of protoplanetary disks, the amounts of these species in ices far exceeds that in the gas phase. As a result, collisions between ice-bearing bodies and newly forming planets are thought to be a major means of delivering these key species to young planets. There currently exist fewer than 250 ice absorption spectra toward Galactic molecular clouds, which is insufficient to reliably trace the ice content of clouds through the various stages of collapse to star and planet formation, or assess the effects of their environments and physical conditions, such as cloud density, internal temperature, presence or absence of embedded sources, external UV and X-ray radiation, gas-phase composition, or cosmic-ray ionization rate, on the ice composition for clouds at similar evolutionary stages. Ultimately, our goal is to understand how these findings connect to our own Solar System.SPHEREx, which is a mission in NASA's Small Explorer (SMEX) program that was selected for a Phase A study in July 2015, will be a game changer for the study of interstellar, circumstellar, and protoplanetary disk ices. SPHEREx will obtain spectra over the entire sky in the optical and near-IR, including the 2.5 to 4.8 micron region, which contains the above biogenic ice features. SPHEREx will detect millions of potential background continuum point sources already catalogued by NASA's Wide-field Infrared Survey Explorer (WISE) at 3.4 and 4.6 microns for which there is evidence for intervening gas and dust based on the 2MASS+WISE colors with sufficient sensitivity to yield ice absorption spectra with SNR ≥ 100 per spectral resolution element. The resulting > 100-fold increase in the number of high-quality ice absorption spectra toward a wide variety of regions distributed throughout the Galaxy will reveal correlations between ice content and environment not possible with current spectra. Finally, SPHEREx will provide JWST with an ice source catalog for follow-up.

Ice Nucleation of Soot Particles in the Cirrus Regime: Is Pore Condensation and Freezing Relevant for Soot?

NASA Astrophysics Data System (ADS)

Kanji, Z. A.; Mahrt, F.; David, R.; Marcolli, C.; Lohmann, U.; Fahrni, J.; Brühwiler, D.

2017-12-01

Heterogeneous ice nucleation (HIN) onto soot particles from previous studies have produced inconsistent results of temperature and relative humidity conditions required for freezing depending on the source of soot particle investigated. The ability of soot to act as HIN depended on the type of soot and size of particle. Often homogenous freezing conditions or water saturation conditions were required to freeze soot particles, rendering HIN irrelevant. Using synthesised mesoporous silica particles, we show pore condensation and freezing works with experiments performed in the Zurich Ice Nucleation Chamber (ZINC). By testing a variety of soot particles in parallel in the Horizontal Ice Nucleation Chamber (HINC), we suggest that previously observed HIN on soot particles is not the responsible mechanism for ice formation. Laboratory generated CAST brown and black soot, commercially available soot and acid treated soot were investigated for their ice nucleation abilities in the mixed-phase and cirrus cloud temperature regimes. No heterogeneous ice nucleation activity is inferred at T > -38 °C (mixed-phase cloud regime), however depending on particle size and soot type, HIN was observed for T < -38 °C (cirrus could regime). Nevertheless, we question if this is caused by a heterogeneous phase change due the presence of a so called active site or due to pore-condensation of water as predicted by the inverse Kelvin effect followed by homogeneous nucleation of ice in the pores or cavities that are ubiquitous in soot particles between the primary spherules. The ability of some particles to freeze at lower relative humidity compared to others demonstrates why hydrophobicity plays a role in ice nucleation, i.e. controlling the conditions at which these cavities fill with water. Thus for more hydrophobic particles pore filling occurs at higher relative humidity, and therefore freezing of pore water and ice crystal growth. Future work focusses on testing the cloud processing ability of soot particles and water adsorption isotherms of the different soot samples to support the hydrophobicity inferences from the ice nucleation results.

Sequential replication-coupled destruction at G1/S ensures genome stability

PubMed Central

Coleman, Kate E.; Grant, Gavin D.; Haggerty, Rachel A.; Brantley, Kristen; Shibata, Etsuko; Workman, Benjamin D.; Dutta, Anindya; Varma, Dileep; Purvis, Jeremy E.; Cook, Jeanette Gowen

2015-01-01

Timely ubiquitin-mediated protein degradation is fundamental to cell cycle control, but the precise degradation order at each cell cycle phase transition is still unclear. We investigated the degradation order among substrates of a single human E3 ubiquitin ligase, CRL4Cdt2, which mediates the S-phase degradation of key cell cycle proteins, including Cdt1, PR-Set7, and p21. Our analysis of synchronized cells and asynchronously proliferating live single cells revealed a consistent order of replication-coupled destruction during both S-phase entry and DNA repair; Cdt1 is destroyed first, whereas p21 destruction is always substantially later than that of Cdt1. These differences are attributable to the CRL4Cdt2 targeting motif known as the PIP degron, which binds DNA-loaded proliferating cell nuclear antigen (PCNADNA) and recruits CRL4Cdt2. Fusing Cdt1's PIP degron to p21 causes p21 to be destroyed nearly concurrently with Cdt1 rather than consecutively. This accelerated degradation conferred by the Cdt1 PIP degron is accompanied by more effective Cdt2 recruitment by Cdt1 even though p21 has higher affinity for PCNADNA. Importantly, cells with artificially accelerated p21 degradation display evidence of stalled replication in mid-S phase and sensitivity to replication arrest. We therefore propose that sequential degradation ensures orderly S-phase progression to avoid replication stress and genome instability. PMID:26272819

MCM-BP regulates unloading of the MCM2–7 helicase in late S phase

PubMed Central

Nishiyama, Atsuya; Frappier, Lori; Méchali, Marcel

2011-01-01

Origins of DNA replication are licensed by recruiting MCM2–7 to assemble the prereplicative complex (pre-RC). How MCM2–7 is inactivated or removed from chromatin at the end of S phase is still unclear. Here, we show that MCM-BP can disassemble the MCM2–7 complex and might function as an unloader of MCM2–7 from chromatin. In Xenopus egg extracts, MCM-BP exists in a stable complex with MCM7, but is not associated with the MCM2–7 hexameric complex. MCM-BP accumulates in nuclei in late S phase, well after the loading of MCM2–7 onto chromatin. MCM-BP immunodepletion in Xenopus egg extracts inhibits replication-dependent MCM dissociation without affecting pre-RC formation and DNA replication. When excess MCM-BP is incubated with Xenopus egg extracts or immunopurified MCM2–7, it binds to MCM proteins and promotes disassembly of the MCM2–7 complex. Recombinant MCM-BP also releases MCM2–7 from isolated late-S-phase chromatin, but this activity is abolished when DNA replication is blocked. MCM-BP silencing in human cells also delays MCM dissociation in late S phase. We propose that MCM-BP plays a key role in the mechanism by which pre-RC is cleared from replicated DNA in vertebrate cells. PMID:21196493

DNA Replication Arrest and DNA Damage Responses Induced by Alkylating Minor Groove Binders

DTIC Science & Technology

2001-05-01

We are interested in the molecular mechanisms involved in DNA replication arrest by the S phase DNA damage checkpoints. Using in vitro simian virus...40 DNA replication assays, we have found three factors that directly contribute to DNA damage-induced DNA replication arrest: Replication Protein A...trans-acting inhibitors. RPA is the major eukaryotic single-stranded DNA binding protein required for DNA replication , repair and recombination. Upon DNA

Modelling present-day basal melt rates for Antarctic ice shelves using a parametrization of buoyant meltwater plumes

NASA Astrophysics Data System (ADS)

Lazeroms, Werner M. J.; Jenkins, Adrian; Hilmar Gudmundsson, G.; van de Wal, Roderik S. W.

2018-01-01

Basal melting below ice shelves is a major factor in mass loss from the Antarctic Ice Sheet, which can contribute significantly to possible future sea-level rise. Therefore, it is important to have an adequate description of the basal melt rates for use in ice-dynamical models. Most current ice models use rather simple parametrizations based on the local balance of heat between ice and ocean. In this work, however, we use a recently derived parametrization of the melt rates based on a buoyant meltwater plume travelling upward beneath an ice shelf. This plume parametrization combines a non-linear ocean temperature sensitivity with an inherent geometry dependence, which is mainly described by the grounding-line depth and the local slope of the ice-shelf base. For the first time, this type of parametrization is evaluated on a two-dimensional grid covering the entire Antarctic continent. In order to apply the essentially one-dimensional parametrization to realistic ice-shelf geometries, we present an algorithm that determines effective values for the grounding-line depth and basal slope in any point beneath an ice shelf. Furthermore, since detailed knowledge of temperatures and circulation patterns in the ice-shelf cavities is sparse or absent, we construct an effective ocean temperature field from observational data with the purpose of matching (area-averaged) melt rates from the model with observed present-day melt rates. Our results qualitatively replicate large-scale observed features in basal melt rates around Antarctica, not only in terms of average values, but also in terms of the spatial pattern, with high melt rates typically occurring near the grounding line. The plume parametrization and the effective temperature field presented here are therefore promising tools for future simulations of the Antarctic Ice Sheet requiring a more realistic oceanic forcing.

Separations on water-ice. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dasgupta, P.K.

1998-07-01

This report focuses on processes to separate water frozen into ice. Research topics include the following: normal phase columnar chromatography; electrophoresis in a planar format; and zone melting type separations on a solid column of ice. Attempts were made to dope the emulsion with {beta}-cyclodextrin in order to separate commercially important chiral drugs such as Inderal.

Infrared Spectra and Optical Constants of Nitrile Ices Relevant to Titan's Atmosphere

NASA Technical Reports Server (NTRS)

Anderson, Carrie; Ferrante, Robert F.; Moore, W. James; Hudson, Reggie; Moore, Marla H.

2011-01-01

Spectra and optical constants of nitrile ices known or suspected to be in Titan?s atmosphere have been determined from 2.0 to 333.3 microns (approx.5000 to 30/cm). These results are relevant to the ongoing modeling of Cassini CIRS observations of Titan?s winter pole. Ices studied were: HCN, hydrogen cyanide; C2N2, cyanogen; CH3CN, acetonitrile; C2H5CN, propionitrile; and HC3N, cyanoacetylene. Optical constants were calculated, using Kramers-Kronig analysis, for each nitrile ice?s spectrum measured at a variety of temperatures, in both the amorphous- and crystalline phases. Spectra were also measured for many of the nitriles after quenching at the annealing temperature and compared with those of annealed ices. For each of these molecules we also measured the real component, n, of the refractive index for amorphous and crystalline phases at 670 nm. Several examples of the information contained in these new data sets and their usefulness in modeling Titan?s observed features will be presented (e.g., the broad emission feature at 160/cm; Anderson and Samuelson, 2011).

Observing the advection of sea ice in the Weddell Sea using buoy and satellite passive microwave data

NASA Technical Reports Server (NTRS)

Massom, Robert A.

1992-01-01

Data from four buoys tracked by Nimbus 6 and concurrent ice concentrations retrieved from Nimbus 7 scanning multichannel microwave radiometer data are used to investigate the progress and behavior of an area of sea ice as it drifts from the southwestern Weddell Sea. The overall drift characteristics and their relationship to ice edge displacement are examined within the framework of four zones. Three phases are identified in the large-scale behavior of the Weddell Sea ice cover, namely, a rapid equatorward and eastward advance, a quasi-equilibrium phase, and a period of rapid recession. Outbreaks of cold continental air alternate with incursions of relatively warm air from the north; warm conditions are recorded as far as 1200 km in from the ice edge in winter. Closed loops in the buoy trajectories, which are clockwise to the south of 63 deg S, reverse to become anticlockwise to the north. A coherence is observed in the response of the buoys to the passage of storms, even though the buoys separated by a distance of over 100 km.

Ganymede's internal structure including thermodynamics of magnesium sulfate oceans in contact with ice

NASA Astrophysics Data System (ADS)

Vance, Steve; Bouffard, Mathieu; Choukroun, Mathieu; Sotin, Christophe

2014-06-01

The large icy moons of Jupiter contain vast quantities of liquid water, a key ingredient for life. Ganymede and Callisto are weaker candidates for habitability than Europa, in part because of the model-based assumption that high-pressure ice layers cover their seafloors and prevent significant water-rock interaction. Water-rock interactions may occur, however, if heating at the rock-ice interface melts the high pressure ice. Highly saline fluids would be gravitationally stable, and might accumulate under the ice due to upward migration, refreezing, and fractionation of salt from less concentrated liquids. To assess the influence of salinity on Ganymede's internal structure, we use available phase-equilibrium data to calculate activity coefficients and predict the freezing of water ice in the presence of aqueous magnesium sulfate. We couple this new equation of state with thermal profiles in Ganymede's interior-employing recently published thermodynamic data for the aqueous phase-to estimate the thicknesses of layers of ice I, III, V, and VI. We compute core and silicate mantle radii consistent with available constraints on Ganymede's mass and gravitational moment of inertia. Mantle radii range from 800 to 900 km for the values of salt and heat flux considered here (4-44 mW m-2 and 0 to 10 wt% MgSO4). Ocean concentrations with salinity higher than 10 wt% have little high pressure ice. Even in a Ganymede ocean that is mostly liquid, achieving such high ocean salinity is permissible for the range of likely S/Si ratios. However, elevated salinity requires a smaller silicate mantle radius to satisfy mass and moment-of-inertia constraints, so ice VI is always present in Ganymede's ocean. For lower values of heat flux, oceans with salinity as low as 3 wt% can co-exist with ice III. Available experimental data indicate that ice phases III and VI become buoyant for salinity higher than 5 wt% and 10 wt%, respectively. Similar behavior probably occurs for ice V at salinities higher than 10 wt%. Flotation can occur over tens of kilometers of depth, indicating the possibility for upward ‘snow’ or other exotic modes of heat and material transport. We assess Ganymede's interior structure for oceans with magnesium sulfate. New activity models predict freezing of ice in magnesium sulfate solutions. High ocean salinities are permitted by constraints on Ganymede's sulfur content. Stability under high pressure ice implies water rock contact and layered oceans. Upward ‘snow’ of high-pressure ices occurs in the lower depths of salty oceans.

The fate of meteoric metals in ice particles: Effects of sublimation and energetic particle bombardment

NASA Astrophysics Data System (ADS)

Mangan, T. P.; Frankland, V. L.; Murray, B. J.; Plane, J. M. C.

2017-08-01

The uptake and potential reactivity of metal atoms on water ice can be an important process in planetary atmospheres and on icy bodies in the interplanetary and interstellar medium. For instance, metal atom uptake affects the gas-phase chemistry of the Earth's mesosphere, and has been proposed to influence the agglomeration of matter into planets in protoplanetary disks. In this study the fate of Mg and K atoms incorporated into water-ice films, prepared under ultra-high vacuum conditions at temperatures of 110-140 K, was investigated. Temperature-programmed desorption experiments reveal that Mg- and K-containing species do not co-desorb when the ice sublimates, demonstrating that uptake on ice particles causes irreversible removal of the metals from the gas phase. This implies that uptake on ice particles in terrestrial polar mesospheric clouds accelerates the formation of large meteoric smoke particles (≥1 nm radius above 80 km) following sublimation of the ice. Energetic sputtering of metal-dosed ice layers by 500 eV Ar+ and Kr+ ions shows that whereas K reacts on (or within) the ice surface to form KOH, adsorbed Mg atoms are chemically inert. These experimental results are consistent with electronic structure calculations of the metals bound to an ice surface, where theoretical adsorption energies on ice are calculated to be -68 kJ mol-1 for K, -91 kJ mol-1 for Mg, and -306 kJ mol-1 for Fe. K can also insert into a surface H2O to produce KOH and a dangling H atom, in a reaction that is slightly exothermic.

The IceCube MasterClass: providing high school students an authentic research experience

NASA Astrophysics Data System (ADS)

Bravo Gallart, Silvia; Bechtol, Ellen; Schultz, David; Madsen, Megan; Demerit, Jean; IceCube Collaboration

2017-01-01

In May 2014, the first one-day long IceCube Masterclass for high school students was offered. The program was inspired by the masterclasses started in 2005 by the International Particle Physics Outreach Group and supported in the U.S. by QuarkNet. Participation in the IceCube masterclasses has grown each year, with a total of over 500 students in three U.S states and three European countries after three editions. In a masterclass, students join an IceCube research team to learn about astrophysics and replicate the results of a published paper, such as the discovery of astrophysical neutrinos or a measurement of the cosmic ray flux. We will discuss both the scientific and educational goals of the program as well as the organizational challenges. Data from the program evaluation will be used to support the need of educational activities based on actual research as a powerful approach for motivating more students to pursue STEM college programs, making science and scientists more approachable to teenagers, and helping students envision a career in science.

CERES-MISR Info

Atmospheric Science Data Center

2013-05-20

... Surface Albedo Cloud Area Fraction Cloud Effective Pressure Cloud Effective Temperature Cloud Effective Height Cloud Top Pressure Cloud Base Pressure Cloud Particle Phase Liquid Water Path Ice Water Path Water Particle Radius Ice Particle ...

CERES CRS Info

Atmospheric Science Data Center

2013-05-17

... Flux - Down Cloud Area Fraction Cloud Effective Pressure Cloud Effective Temperature Cloud Effective Height Cloud Top Pressure Cloud Base Pressure Cloud Particle Phase Liquid Water Path Ice Water Path Water Particle Radius Ice Particle ...

Emerging players in the initiation of eukaryotic DNA replication

PubMed Central

2012-01-01

Faithful duplication of the genome in eukaryotes requires ordered assembly of a multi-protein complex called the pre-replicative complex (pre-RC) prior to S phase; transition to the pre-initiation complex (pre-IC) at the beginning of DNA replication; coordinated progression of the replisome during S phase; and well-controlled regulation of replication licensing to prevent re-replication. These events are achieved by the formation of distinct protein complexes that form in a cell cycle-dependent manner. Several components of the pre-RC and pre-IC are highly conserved across all examined eukaryotic species. Many of these proteins, in addition to their bona fide roles in DNA replication are also required for other cell cycle events including heterochromatin organization, chromosome segregation and centrosome biology. As the complexity of the genome increases dramatically from yeast to human, additional proteins have been identified in higher eukaryotes that dictate replication initiation, progression and licensing. In this review, we discuss the newly discovered components and their roles in cell cycle progression. PMID:23075259

Both Chromosome Decondensation and Condensation Are Dependent on DNA Replication in C. elegans Embryos

PubMed Central

Sonneville, Remi; Craig, Gillian; Labib, Karim; Gartner, Anton; Blow, J. Julian

2015-01-01

Summary During cell division, chromatin alternates between a condensed state to facilitate chromosome segregation and a decondensed form when DNA replicates. In most tissues, S phase and mitosis are separated by defined G1 and G2 gap phases, but early embryogenesis involves rapid oscillations between replication and mitosis. Using Caenorhabditis elegans embryos as a model system, we show that chromosome condensation and condensin II concentration on chromosomal axes require replicated DNA. In addition, we found that, during late telophase, replication initiates on condensed chromosomes and promotes the rapid decondensation of the chromatin. Upon replication initiation, the CDC-45-MCM-GINS (CMG) DNA helicase drives the release of condensin I complexes from chromatin and the activation or displacement of inactive MCM-2–7 complexes, which together with the nucleoporin MEL-28/ELYS tethers condensed chromatin to the nuclear envelope, thereby promoting chromatin decondensation. Our results show how, in an early embryo, the chromosome-condensation cycle is functionally linked with DNA replication. PMID:26166571

PCNA appears in two populations of slow and fast diffusion with a constant ratio throughout S-phase in replicating mammalian cells.

PubMed

Zessin, Patrick J M; Sporbert, Anje; Heilemann, Mike

2016-01-13

DNA replication is a fundamental cellular process that precedes cell division. Proliferating cell nuclear antigen (PCNA) is a central scaffold protein that orchestrates DNA replication by recruiting many factors essential for the replication machinery. We studied the mobility of PCNA in live mammalian cells using single-particle tracking in combination with photoactivated-localization microscopy (sptPALM) and found two populations. The first population which is only present in cells with active DNA replication, showed slow diffusion and was found to be located in replication foci. The second population showed fast diffusion, and represents the nucleoplasmic pool of unbound PCNA not involved in DNA replication. The ratio of these two populations remained constant throughout different stages of S-phase. A fraction of molecules in both populations showed spatially constrained mobility. We determined an exploration radius of ~100 nm for 13% of the slow-diffusing PCNA molecules, and of ~600 nm for 46% of the fast-diffusing PCNA molecules.

Observing ice particle growth along fall streaks in mixed-phase clouds using spectral polarimetric radar data

NASA Astrophysics Data System (ADS)

Pfitzenmaier, Lukas; Unal, Christine M. H.; Dufournet, Yann; Russchenberg, Herman W. J.

2018-06-01

The growth of ice crystals in presence of supercooled liquid droplets represents the most important process for precipitation formation in the mid-latitudes. However, such mixed-phase interaction processes remain relatively unknown, as capturing the complexity in cloud dynamics and microphysical variabilities turns to be a real observational challenge. Ground-based radar systems equipped with fully polarimetric and Doppler capabilities in high temporal and spatial resolutions such as the S-band transportable atmospheric radar (TARA) are best suited to observe mixed-phase growth processes. In this paper, measurements are taken with the TARA radar during the ACCEPT campaign (analysis of the composition of clouds with extended polarization techniques). Besides the common radar observables, the 3-D wind field is also retrieved due to TARA unique three beam configuration. The novelty of this paper is to combine all these observations with a particle evolution detection algorithm based on a new fall streak retrieval technique in order to study ice particle growth within complex precipitating mixed-phased cloud systems. In the presented cases, three different growth processes of ice crystals, plate-like crystals, and needles are detected and related to the presence of supercooled liquid water. Moreover, TARA observed signatures are assessed with co-located measurements obtained from a cloud radar and radiosondes. This paper shows that it is possible to observe ice particle growth processes within complex systems taking advantage of adequate technology and state of the art retrieval algorithms. A significant improvement is made towards a conclusive interpretation of ice particle growth processes and their contribution to rain production using fall streak rearranged radar data.

Numerical analysis on thermal characteristics and ice melting efficiency for microwave deicing vehicle

NASA Astrophysics Data System (ADS)

Wang, Can; Yang, Bo; Tan, Gangfeng; Guo, Xuexun; Zhou, Li; Xiong, Shengguang

2016-05-01

In the high latitudes, the icy patches on the road are frequently generated and have a wide distribution, which are difficult to remove and obviously affect the normal usage of the highways, bridges and airport runways. Physical deicing, such as microwave (MW) deicing, help the ice melt completely through heating mode and then the ice layer can be swept away. Though it is no pollution and no damage to the ground, the low efficiency hinders the development of MW deicing vehicle equipped without sufficient speed. In this work, the standard evaluation of deicing is put forward firstly. The intensive MW deicing is simplified to ice melting process characterized by one-dimensional slab with uniform volumetric energy generation, which results in phase transformation and interface motion between ice and water. The heating process is split into the superposition of three parts — non-heterogeneous heating for ground without phase change, heat transfer with phase change and the heat convection between top surface of ice layer and flow air. Based on the transient heat conduction theory, a mathematical model, combining electromagnetic and two-phase thermal conduction, is proposed in this work, which is able to reveal the relationship between the deicing efficiency and ambient conditions, as well as energy generation and material parameters. Using finite difference time-domain, this comprehensive model is developed to solve the moving boundary heat transfer problem in a one-dimensional structured gird. As a result, the stimulation shows the longitudinal temperature distributions in all circumstances and quantitative validation is obtained by comparing simulated temperature distributions under different conditions. In view of the best economy and fast deicing, these analytic solutions referring to the complex influence factors of deicing efficiency demonstrate the optimal matching for the new deicing design.

Responses of Mixed-Phase Cloud Condensates and Cloud Radiative Effects to Ice Nucleating Particle Concentrations in NCAR CAM5 and DOE ACME Climate Models

NASA Astrophysics Data System (ADS)

Liu, X.; Shi, Y.; Wu, M.; Zhang, K.

2017-12-01

Mixed-phase clouds frequently observed in the Arctic and mid-latitude storm tracks have the substantial impacts on the surface energy budget, precipitation and climate. In this study, we first implement the two empirical parameterizations (Niemand et al. 2012 and DeMott et al. 2015) of heterogeneous ice nucleation for mixed-phase clouds in the NCAR Community Atmosphere Model Version 5 (CAM5) and DOE Accelerated Climate Model for Energy Version 1 (ACME1). Model simulated ice nucleating particle (INP) concentrations based on Niemand et al. and DeMott et al. are compared with those from the default ice nucleation parameterization based on the classical nucleation theory (CNT) in CAM5 and ACME, and with in situ observations. Significantly higher INP concentrations (by up to a factor of 5) are simulated from Niemand et al. than DeMott et al. and CNT especially over the dust source regions in both CAM5 and ACME. Interestingly the ACME model simulates higher INP concentrations than CAM5, especially in the Polar regions. This is also the case when we nudge the two models' winds and temperature towards the same reanalysis, indicating more efficient transport of aerosols (dust) to the Polar regions in ACME. Next, we examine the responses of model simulated cloud liquid water and ice water contents to different INP concentrations from three ice nucleation parameterizations (Niemand et al., DeMott et al., and CNT) in CAM5 and ACME. Changes in liquid water path (LWP) reach as much as 20% in the Arctic regions in ACME between the three parameterizations while the LWP changes are smaller and limited in the Northern Hemispheric mid-latitudes in CAM5. Finally, the impacts on cloud radiative forcing and dust indirect effects on mixed-phase clouds are quantified with the three ice nucleation parameterizations in CAM5 and ACME.

Ice Mapping Observations in Galactic Star-Forming Regions: the AKARI Legacy

NASA Astrophysics Data System (ADS)

Fraser, Helen Jane; Suutarinnen, Aleksi; Noble, Jennifer

2015-08-01

It is becoming increasingly clear that explaining the small-scale distribution of many gas-phase molecules relies on our interpretation of the complex inter-connectivity between gas- and solid-phase interstellar chemistries. Inputs to proto-stellar astrochemical models are required that exploit ice compositions reflecting the historical physical conditions in pre-stellar environments when the ices first formed. Such data are required to translate the near-universe picture of ice-composition to our understanding of the role of extra-galactic ices in star-formation at higher redshifts.Here we present the first attempts at multi-object ice detections, and the subsequent ice column density mapping. The AKARI space telescope was uniquely capable of observing all the ice features between 2 and 5 microns, thereby detecting H2O, CO and CO2 ices concurrently, through their stretching vibrational features. Our group has successfully extracted an unprecedented volume of ice spectra from AKARI, including sources with not more than 2 mJy flux at 3 microns, showing:(a) H2O CO and CO2 ices on 30 lines of sight towards pre-stellar and star-forming cores, which when combined with laboratory experiments indicate how the chemistries of these three ices are interlinked (Noble et al (2013)),(b) ice maps showing the spatial distribution of water ice across 12 pre-stellar cores, in different molecular clouds (Suutarinnen et al (2015)), and the distribution of ice components within these cores on 1000 AU scales (Noble et al (2015)),(c) over 200 new detections of water ice, mostly on lines of sight towards background sources (> 145), indicating that water ice column density has a minimum value as a function of Av, but on a cloud-by-cloud basis typically correlates with Av, and dust emissivity at 250 microns (Suutarinnen et al (2015)),(d) the first detections of HDO ice towards background stars (Fraser et al (2015)).We discuss whether these results support the picture of a generic chemical evolutionary scenario for interstellar ice chemistry, ranging from pre-stellar to extra-galactic scales.

Ice formation in altocumulus clouds over Leipzig: Remote sensing measurements and detailed model simulations

NASA Astrophysics Data System (ADS)

Simmel, Martin; Bühl, Johannes; Ansmann, Albert; Tegen, Ina

2014-05-01

Over Leipzig, altocumulus clouds are frequently observed using a suite of remote sensing instruments. These observations cover a wide range of heights, temperatures, and microphysical properties of the clouds ranging from purely liquid to heavily frozen. For the current study, two cases were chosen to test the sensitivity of these clouds with respect to several microphysical and dynamical parameters such as aerosol properties (CCN, IN), ice particle shape as well as turbulence. The mixed-phase spectral microphysical model SPECS was coupled to a dynamical model of the Asai-Kasahara type resulting in the model system AK-SPECS. The relatively simple dynamics allows for a fine vertical resolution needed for the rather shallow cloud layers observed. Additionally, the proper description of hydrometeor sedimentation is important especially for the fast growing ice crystals to realistically capture their interaction with the vapour and liquid phase (Bergeron-Findeisen process). Since the focus is on the cloud microphysics, the dynamics in terms of vertical velocity profile is prescribed for the model runs and the feedback of the microphysics on dynamics by release or consumption of latent heat due to phase transfer is not taken into account. The microphysics focuses on (1) ice particle shape allowing hexagonal plates and columns with size-dependant axis ratios and (2) the ice nuclei (IN) budget realized with a prognostic temperature resolved field of potential IN allowing immersion freezing only when active IN and supercooled drops above a certain size threshold are present within a grid cell. Sensitivity studies show for both cases that ice particle shape seems to have the major influence on ice mass formation under otherwise identical conditions. This is due to the effect (1) on terminal fall velocity of the individual ice particle allowing for longer presence times in conditions supersaturated with respect to ice and (2) on water vapour deposition which is enhanced due to increased capacitance because of deviation from the spherical shape.

The organic surface of 5145 Pholus: Constraints set by scattering theory

NASA Technical Reports Server (NTRS)

Wilson, Peter D.; Sagan, Carl; Thompson, W. Reid

1994-01-01

No known body in the Solar System has a spectrum redder than that of object 5145 Pholus. We use Hapke scattering theory and optical constants measured in this laboratory to examine the ability of mixtures of a number of organic solids and ices to reproduce the observed spectrum and phase variation. The primary materials considered are poly-HCN, kerogen, Murchison organic extract, Titan tholin, ice tholin, and water ice. In a computer grid search of over 10 million models, we find an intraparticle mixture of 15% Titan tholin, 10% poly-HCN, and 75% water ice with 10-micrometers particles to provide an excellent fit. Replacing water ice with ammonia ice improves the fits significantly while using a pure hydrocarbon tholin, Tholin alpha, instead of Titan tholin makes only modest improvements. All acceptable fits require Titan tholin or some comparable material to provide the steep slope in the visible, and poly-HCN or some comparable material to provide strong absorption in the near-infrared. A pure Titan tholin surface with 16-micrometers particles, as well as all acceptable Pholus models, fit the present spectrophotometric data for the transplutonian object 1992 QB(sub 1). The feasibility of gas-phase chemistry to generate material like Titan tholin on such small objects is examined. An irradiated transient atmosphere arising from sublimating ices may generate at most a few centimeters of tholin over the lifetime of the Solar System, but this is insignificant compared to the expected lag deposit of primordial contaminants left behind by the sublimating ice. Irradiation of subsurface N2/CH4 or NH3/CH4 ice by cosmic rays may generate approximately 20 cm of tholin in the upper 10 m of regolith in the same time scale but the identity of this tholin to its gas-phase equivalent has not been demonstrated.

Chemical composition and mixing-state of ice residuals sampled within mixed phase clouds

NASA Astrophysics Data System (ADS)

Ebert, M.; Worringen, A.; Benker, N.; Mertes, S.; Weingartner, E.; Weinbruch, S.

2010-10-01

During an intensive campaign at the high alpine research station Jungfraujoch, Switzerland, in February/March 2006 ice particle residuals within mixed-phase clouds were sampled using the Ice-counterflow virtual impactor (Ice-CVI). Size, morphology, chemical composition, mineralogy and mixing state of the ice residual and the interstitial (i.e., non-activated) aerosol particles were analyzed by scanning and transmission electron microscopy. Ice nuclei (IN) were identified from the significant enrichment of particle groups in the ice residual (IR) samples relative to the interstitial aerosol. In terms of number lead-bearing particles are enriched by a factor of approximately 25, complex internal mixtures with silicates or metal oxides as major components by a factor of 11, and mixtures of secondary aerosol and soot (C-O-S particles) by a factor of 2. Other particle groups (sulfates, sea salt, Ca-rich particles, external silicates) observed in the ice-residual samples cannot be assigned unambiguously as IN. Between 9 and 24% of all IR are Pb-bearing particles. Pb was found as major component in around 10% of these particles (PbO, PbCl2). In the other particles, Pb was found as some 100 nm sized agglomerates consisting of 3-8 nm sized primary particles (PbS, elemental Pb). C-O-S particles are present in the IR at an abundance of 17-27%. The soot component within these particles is strongly aged. Complex internal mixtures occur in the IR at an abundance of 9-15%. Most IN identified at the Jungfraujoch station are internal mixtures containing anthropogenic components (either as main or minor constituent), and it is concluded that admixture of the anthropogenic component is responsible for the increased IN efficiency within mixed phase clouds. The mixing state appears to be a key parameter for the ice nucleation behaviour that cannot be predicted from the separate components contained within the individual particles.

Deposition Nucleation or Pore Condensation and Freezing?

NASA Astrophysics Data System (ADS)

David, Robert O.; Mahrt, Fabian; Marcolli, Claudia; Fahrni, Jonas; Brühwiler, Dominik; Lohmann, Ulrike; Kanji, Zamin A.

2017-04-01

Ice nucleation plays an important role in moderating Earth's climate and precipitation formation. Over the last century of research, several mechanisms for the nucleation of ice have been identified. Of the known mechanisms for ice nucleation, only deposition nucleation occurs below water saturation. Deposition nucleation is defined as the formation of ice from supersaturated water vapor on an insoluble particle without the prior formation of liquid. However, recent work has found that the efficiency of so-called deposition nucleation shows a dependence on the homogeneous freezing temperature of water even though no liquid phase is presumed to be present. Additionally, the ability of certain particles to nucleate ice more efficiently after being pre-cooled (pre-activation) raises questions on the true mechanism when ice nucleation occurs below water saturation. In an attempt to explain the dependence of the efficiency of so-called deposition nucleation on the onset of homogeneous freezing of liquid water, pore condensation and freezing has been proposed. Pore condensation and freezing suggests that the liquid phase can exist under sub-saturated conditions with respect to liquid in narrow confinements or pores due to the inverse Kelvin effect. Once the liquid-phase condenses, it is capable of nucleating ice either homogeneously or heterogeneously. The role of pore condensation and freezing is assessed in the Zurich Ice Nucleation Chamber, a continuous flow diffusion chamber, using spherical nonporous and mesoporous silica particles. The mesoporous silica particles have a well-defined particle size range of 400 to 600nm with discreet pore sizes of 2.5, 2.8, 3.5 and 3.8nm. Experiments conducted between 218K and 238K show that so-called deposition nucleation only occurs below the homogenous freezing temperature of water and is highly dependent on the presence of pores and their size. The results strongly support pore condensation and freezing, questioning the role of deposition nucleation as an ice nucleation pathway.

Sustainability of a Compartmentalized Host-Parasite Replicator System under Periodic Washout-Mixing Cycles

PubMed Central

Furubayashi, Taro

2018-01-01

The emergence and dominance of parasitic replicators are among the major hurdles for the proliferation of primitive replicators. Compartmentalization of replicators is proposed to relieve the parasite dominance; however, it remains unclear under what conditions simple compartmentalization uncoupled with internal reaction secures the long-term survival of a population of primitive replicators against incessant parasite emergence. Here, we investigate the sustainability of a compartmentalized host-parasite replicator (CHPR) system undergoing periodic washout-mixing cycles, by constructing a mathematical model and performing extensive simulations. We describe sustainable landscapes of the CHPR system in the parameter space and elucidate the mechanism of phase transitions between sustainable and extinct regions. Our findings revealed that a large population size of compartments, a high mixing intensity, and a modest amount of nutrients are important factors for the robust survival of replicators. We also found two distinctive sustainable phases with different mixing intensities. These results suggest that a population of simple host–parasite replicators assumed before the origin of life can be sustained by a simple compartmentalization with periodic washout-mixing processes. PMID:29373536

Grounding line migration through the calving season at Jakobshavn Isbræ, Greenland, observed with terrestrial radar interferometry

NASA Astrophysics Data System (ADS)

Xie, Surui; Dixon, Timothy H.; Voytenko, Denis; Deng, Fanghui; Holland, David M.

2018-04-01

Ice velocity variations near the terminus of Jakobshavn Isbræ, Greenland, were observed with a terrestrial radar interferometer (TRI) during three summer campaigns in 2012, 2015, and 2016. We estimate a ˜ 1 km wide floating zone near the calving front in early summer of 2015 and 2016, where ice moves in phase with ocean tides. Digital elevation models (DEMs) generated by the TRI show that the glacier front here was much thinner (within 1 km of the glacier front, average ice surface is ˜ 100 and ˜ 110 m above local sea level in 2015 and 2016, respectively) than ice upstream (average ice surface is > 150 m above local sea level at 2-3 km to the glacier front in 2015 and 2016). However, in late summer 2012, there is no evidence of a floating ice tongue in the TRI observations. Average ice surface elevation near the glacier front was also higher, ˜ 125 m above local sea level within 1 km of the glacier front. We hypothesize that during Jakobshavn Isbræ's recent calving seasons the ice front advances ˜ 3 km from winter to spring, forming a > 1 km long floating ice tongue. During the subsequent calving season in mid- and late summer, the glacier retreats by losing its floating portion through a sequence of calving events. By late summer, the entire glacier is likely grounded. In addition to ice velocity variation driven by tides, we also observed a velocity variation in the mélange and floating ice front that is non-parallel to long-term ice flow motion. This cross-flow-line signal is in phase with the first time derivative of tidal height and is likely associated with tidal currents or bed topography.

SPME-GCMS study of the natural attenuation of aviation diesel spilled on the perennial ice cover of Lake Fryxell, Antarctica.

PubMed

Jaraula, Caroline M B; Kenig, Fabien; Doran, Peter T; Priscu, John C; Welch, Kathleen A

2008-12-15

In January 2003, a helicopter crashed on the 5 m thick perennial ice cover of Lake Fryxell (McMurdo Dry Valleys, East Antarctica), spilling approximately 730 l of aviation diesel fuel (JP5-AN8 mixture). The molecular composition of the initial fuel was analyzed by solid phase microextraction (SPME) gas chromatography-mass spectrometry (GC-MS), then compared to the composition of the contaminated ice, water, and sediments collected a year after the spill. Evaporation is the major agent of diesel weathering in meltpool waters and in the ice. This process is facilitated by the light non-aqueous phase liquid properties of the aviation diesel and by the net upward movement of the ice as a result of ablation. In contrast, in sediment-bearing ice, biodegradation by both alkane- and aromatic-degraders was the prominent attenuation mechanism. The composition of the diesel contaminant in the ice was also affected by the differential solubility of its constituents, some ice containing water-washed diesel and some ice containing exclusively relatively soluble low molecular weight aromatic hydrocarbons such as alkylbenzene and naphthalene homologues. The extent of evaporation, water washing and biodegradation between sites and at different depths in the ice are evaluated on the basis of molecular ratios and the results of JP5-AN8 diesel evaporation experiment at 4 degrees C. Immediate spread of the aviation diesel was enhanced where the presence of aeolian sediments induced formations of meltpools. However, in absence of melt pools, slow spreading of the diesel is possible through the porous ice and the ice cover aquifer.

An Initial Study of the Fundamentals of Ice Crystal Icing Physics in the NASA Propulsion Systems Laboratory

NASA Technical Reports Server (NTRS)

Struk, Peter; Bartkus, Tadas; Tsao, Jen-Ching; Bencic, Timothy; King, Michael; Ratvasky, Thomas; Van Zante, Judith

2017-01-01

This presentation shows results from an initial study of the fundamental physics of ice-crystal ice accretion using the NASA Propulsion Systems Lab (PSL). Ice accretion due to the ingestion of ice-crystals is being attributed to numerous jet-engine power-loss events. The NASA PSL is an altitude jet-engine test facility which has recently added a capability to inject ice particles into the flow. NASA is evaluating whether this facility, in addition to full-engine and motor-driven-rig tests, can be used for more fundamental ice-accretion studies that simulate the different mixed-phase icing conditions along the core flow passage of a turbo-fan engine compressor. The data from such fundamental accretion tests will be used to help develop and validate models of the accretion process. The present study utilized a NACA0012 airfoil. The mixed-phase conditions were generated by partially freezing the liquid-water droplets ejected from the spray bars. This presentation shows data regarding (1) the freeze out characteristics of the cloud, (2) changes in aerothermal conditions due to the presence of the cloud, and (3) the ice accretion characteristics observed on the airfoil model. The primary variable in this test was the PSL plenum humidity which was systematically varied for two duct-exit-plane velocities (85 and 135 ms) as well as two particle size clouds (15 and 50 m MVDi). The observed clouds ranged from fully glaciated to fully liquid, where the liquid clouds were at least partially supercooled. The air total temperature decreased at the test section when the cloud was activated due to evaporation. The ice accretions observed ranged from sharp arrow-like accretions, characteristic of ice-crystal erosion, to cases with double-horn shapes, characteristic of supercooled water accretions.

An Initial Study of the Fundamentals of Ice Crystal Icing Physics in the NASA Propulsion Systems Laboratory

NASA Technical Reports Server (NTRS)

Struk, Peter M.; Ratvasky, Thomas P.; Bencic, Timothy J.; Van Zante, Judith F.; King, Michael C.; Tsao, Jen-Ching; Bartkus, Tadas P.

2017-01-01

This paper presents results from an initial study of the fundamental physics of ice-crystal ice accretion using the NASA Propulsion Systems Lab (PSL). Ice accretion due to the ingestion of ice-crystals is being attributed to numerous jet-engine power-loss events. The NASA PSL is an altitude jet-engine test facility which has recently added a capability to inject ice particles into the flow. NASA is evaluating whether this facility, in addition to full-engine and motor-driven-rig tests, can be used for more fundamental ice-accretion studies that simulate the different mixed-phase icing conditions along the core flow passage of a turbo-fan engine compressor. The data from such fundamental accretion tests will be used to help develop and validate models of the accretion process. The present study utilized a NACA0012 airfoil. The mixed-phase conditions were generated by partially freezing the liquid-water droplets ejected from the spray bars. This paper presents data regarding (1) the freeze out characteristics of the cloud, (2) changes in aerothermal conditions due to the presence of the cloud, and (3) the ice accretion characteristics observed on the airfoil model. The primary variable in this test was the PSL plenum humidity which was systematically varied for two duct-exit-plane velocities (85 and 135 ms) as well as two particle size clouds (15 and 50 m MVDi). The observed clouds ranged from fully glaciated to fully liquid, where the liquid clouds were at least partially supercooled. The air total temperature decreased at the test section when the cloud was activated due to evaporation. The ice accretions observed ranged from sharp arrow-like accretions, characteristic of ice-crystal erosion, to cases with double-horn shapes, characteristic of supercooled water accretions.

An Analysis of the System Installation Costs of Diurnal Ice Storage Cooling Systems for Army Facilities

DTIC Science & Technology

1991-07-01

integrate -into the existing -structure and HVAC system. Costs-for a eutectic salt system are shown in Table 5 to compare with the DIS cooling systems. The... eutectic salt system is not an ice storage system, but is a phase change system that stores energy iniits heat of fusion and changes phase at 47 ’F

Evaluating the Impacts of Extreme Events on Ecological Processes Through the Lens of an Ice Storm Manipulation Experiment

NASA Astrophysics Data System (ADS)

Campbell, J. L.; Rustad, L.; Driscoll, C. T.; Fahey, T.; Garlick, S.; Groffman, P.; Schaberg, P. G.

2016-12-01

It is increasingly evident that human-induced climate change is altering the prevalence and severity of extreme weather events. Ice storms are an example of a rare and typically localized extreme weather event that is difficult to predict and has impacts that are poorly understood. We used long-term data and a field manipulation experiment to evaluate how ice storms alter the structure, function, and composition of forest ecosystems. Plots established after a major ice storm in the Northeast in 1998 were re-sampled to evaluate longer-term (17 yr) responses of tree health, productivity, and species composition. Results indicate, that despite changes in herbaceous vegetation in the years immediately after the ice storm, the forest canopy recovered, albeit with some changes in composition, most notably a release of American Beech. An ice storm field manipulation experiment was used to evaluate mechanistic understanding of short term ecological responses. Water from a stream was sprayed above the forest canopy when air temperatures were below freezing, which was effective in simulating a natural ice storm. The experimental design consisted of three levels of ice thickness treatment with two replicates per treatment. The plots with the two more severe icing treatments experienced significant damage to the forest canopy, creating gaps. These plots also had large inputs of fine and coarse woody debris to the forest floor. The exposure to light and presence of brush piles in the more heavily damaged plots resulted in warming with increased spatial variability of soil temperature. Preliminary results from the early growing season have shown no significant changes in soil respiration or soil solution losses of nutrients despite significant forest canopy damage. Further monitoring will determine whether these trends continue in the future.

CERES SSF Current Info

Atmospheric Science Data Center

2013-05-17

... Surface Albedo Cloud Area Fraction Cloud Effective Pressure Cloud Effective Temperature Cloud Effective Height Cloud Top Pressure Cloud Base Pressure Cloud Particle Phase Liquid Water Path Ice Water Path Water Particle Radius Ice Particle ...

Tropical pacing of Antarctic sea ice increase

NASA Astrophysics Data System (ADS)

Schneider, D. P.

2015-12-01

One reason why coupled climate model simulations generally do not reproduce the observed increase in Antarctic sea ice extent may be that their internally generated climate variability does not sync with the observed phases of phenomena like the Pacific Decadal Oscillation (PDO) and ENSO. For example, it is unlikely for a free-running coupled model simulation to capture the shift of the PDO from its positive to negative phase during 1998, and the subsequent ~15 year duration of the negative PDO phase. In previously presented work based on atmospheric models forced by observed tropical SSTs and stratospheric ozone, we demonstrated that tropical variability is key to explaining the wind trends over the Southern Ocean during the past ~35 years, particularly in the Ross, Amundsen and Bellingshausen Seas, the regions of the largest trends in sea ice extent and ice season duration. Here, we extend this idea to coupled model simulations with the Community Earth System Model (CESM) in which the evolution of SST anomalies in the central and eastern tropical Pacific is constrained to match the observations. This ensemble of 10 "tropical pacemaker" simulations shows a more realistic evolution of Antarctic sea ice anomalies than does its unconstrained counterpart, the CESM Large Ensemble (both sets of runs include stratospheric ozone depletion and other time-dependent radiative forcings). In particular, the pacemaker runs show that increased sea ice in the eastern Ross Sea is associated with a deeper Amundsen Sea Low (ASL) and stronger westerlies over the south Pacific. These circulation patterns in turn are linked with the negative phase of the PDO, characterized by negative SST anomalies in the central and eastern Pacific. The timing of tropical decadal variability with respect to ozone depletion further suggests a strong role for tropical variability in the recent acceleration of the Antarctic sea ice trend, as ozone depletion stabilized by late 1990s, prior to the most recent major shift in tropical climate. In the pacemaker runs, the positive sea ice trend in the eastern Ross Sea is stronger during the most recent period (~2000-2014) than it is during period of rapid ozone depletion (~1980-1996).

Stable carbon isotopes from Torneträsk, northern Sweden provide a millennial length reconstruction of summer sunshine and its relationship to Arctic circulation

NASA Astrophysics Data System (ADS)

Loader, N. J.; Young, G. H. F.; Grudd, H.; McCarroll, D.

2013-02-01

This paper presents results from the first 1100 years of a long stable carbon isotope chronology currently in development from Scots Pine (Pinus sylvestris L.) trees growing in the Torneträsk region of northern Sweden. The isotope record currently comprises a total of 74 trees with a mean annual replication of >12, thereby enabling it to be compared directly with other tree-ring based palæoclimate reconstructions from this region. In developing the reconstruction, several key topics in isotope dendroclimatology (chronology construction, replication, CO2 adjustment and age trends) were addressed. The resulting carbon isotope series is calibrated against instrumental data from the closest meteorological station at Abisko (AD1913-2008) to provide a record of June-August sunshine for northern Fennoscandia. This parameter is closely linked to the direct control of assimilation rate; Photosynthetically Active Radiation (PAR) and the indirect measures; mean July-August temperature and percent cloud cover. The coupled response of summer sunshine and temperature in this region permits a multi-parameter comparison with a local reconstruction of past temperature variability based upon tree growth proxies to explore the stability of this coupling through time. Several periods are identified where the temperature (X-ray density) and sunshine (stable carbon isotope ratio) records diverge. The most significant and sustained of these occur between c AD1200-1380 and c AD1550-1780, providing evidence for a cool, sunny, two-phase "Little Ice Age". Whilst summer sunshine reconstructed for the 20th century is significantly different from the mean of the last 1100 years (P < 0.01), conditions during the early mediæval period are similar to those experienced in northern Fennoscandia during the 20th century (P > 0.01), so it is the 17th-18th, and to a lesser extent, the 13th centuries rather than the early mediæval period that appear anomalous when viewed within the context of the last 1100 years. The observed departures between temperature and sunshine are interpreted as indicating a change in large-scale circulation associated with a southward migration of the Polar Front. Such a change, affecting the Northern Annular Mode (Arctic Oscillation) would result in more stable anticyclonic conditions (cool, bright, summers) over northern Fennoscandia, thus providing a testable mechanism for the development of a multi-phase, time-transgressive "Little Ice Age" across Europe.

Study on the glaze ice accretion of wind turbine with various chord lengths

NASA Astrophysics Data System (ADS)

Liang, Jian; Liu, Maolian; Wang, Ruiqi; Wang, Yuhang

2018-02-01

Wind turbine icing often occurs in winter, which changes the aerodynamic characteristics of the blades and reduces the work efficiency of the wind turbine. In this paper, the glaze ice model is established for horizontal-axis wind turbine in 3-D. The model contains the grid generation, two-phase simulation, heat and mass transfer. Results show that smaller wind turbine suffers from more serious icing problem, which reflects on a larger ice thickness. Both the collision efficiency and heat transfer coefficient increase under smaller size condition.

On the state of methane and nitrogen ice on Pluto and Triton: Implications of the binary phase diagram

NASA Astrophysics Data System (ADS)

Trafton, Laurence M.

2015-01-01

Compositional analyses of Pluto's surface ice in the literature typically include large areas on the body where CH4 and other volatiles are segregated in the pure form from the solid solution N2:CH4 in which CH4 is diluted. However, the existence of continent-size areas of pure CH4 are in conflict with both of the alternative models that successfully explain the enhancement of CH4 in Pluto's atmosphere, the Detailed Balancing thermal equilibrium model and the Hot Methane Patch model. Pluto's spectrum includes an apparently unshifted CH4 component while Triton's does not, and 93% of the concentration range of the binary phase diagram at 38 K shows that these species exist as a mixture of two saturated solid solution phases. Recognizing this, we propose that both of these saturated phases are present on Pluto and the CH4-rich phase of the mixture, CH4:N2, is the source of the relatively unshifted CH4 spectrum attributed to pure CH4. We also propose that CH4 is less abundant in Triton's ice to the point where either the ice is not saturated or the saturated CH4:N2 phase has not been detected. In this scenario, the partial vapor pressures do not change when the relative proportions of these saturated phases are varied in the mixture. Thus, the partial vapor pressures are independent of N2-CH4 concentrations if both saturated phases are present. Accordingly, the longitudinal and seasonal variations of CH4 and N2 features in Pluto's spectrum would be attributed to spatial variations in the relative proportions of these species. This may occur during volatile transport in the sublimation wind through extensive influences. The lower, unsaturated, values of the mole fraction of CH4 in the ice reported by Owen et al. (Owen et al. [1993]. Science 261, 745-748) and Cruikshank et al. (Cruikshank, D.P., Rush, T.L., Owen, T.C., Quirico, E., de Bergh, C. [1998]. The surface compositions of Triton, Pluto, and Charon. In: Solar System Ices. Astrophysics and Space Science Library Series, vol. 227. Kluwer Academic Publishers, Dordrecht), and by Doute et al. (Doute, S., Schmitt, B., Quirico, E., Owen, T.C., Cruikshank, D.P., de Bergh, C., Geballe, T.R., Roush, T.L. [1999]. Icarus 142, 421-444) based on a compositional analysis of Pluto's surface, were not obtained using optical constants for components consistent with the constraints of the phase diagram.

Atlantic Multidecadal Oscillation Modulates the Impacts of Arctic Sea Ice Decline

NASA Astrophysics Data System (ADS)

Li, Fei; Orsolini, Yvan J.; Wang, Huijun; Gao, Yongqi; He, Shengping

2018-03-01

The Arctic sea ice cover has been rapidly declining in the last two decades, concurrent with a shift in the Atlantic Multidecadal Oscillation (AMO) to its warm phase around 1996/1997. Here we use both observations and model simulations to investigate the modulation of the atmospheric impacts of the decreased sea ice cover in the Atlantic sector of the Arctic (AASIC) by the AMO. We find that the AASIC loss during a cold AMO phase induces increased Ural blocking activity, a southeastward-extended snowpack, and a cold continent anomaly over Eurasia in December through northerly cold air advection and moisture transport from the Arctic. The increased Ural blocking activity and more extended Eurasian snowpack strengthen the upward propagation of planetary waves over the Siberian-Pacific sector in the lower stratosphere and hence lead to a weakened stratospheric polar vortex and a negative Arctic Oscillation (AO) phase at the surface in February. However, corresponding to the AASIC loss during a warm AMO phase, one finds more widespread warming over the Arctic and a reduced snowpack over Northern Eurasia in December. The stratosphere-troposphere coupling is suppressed in early winter and no negative AO anomaly is found in February. We suggest that the cold AMO phase is important to regulate the atmospheric response to AASIC decline, and our study provides insight to the ongoing debate on the connection between the Arctic sea ice and the AO.

Microstructure and mechanical properties of a newly developed low Young's modulus Ti-15Zr-5Cr-2Al biomedical alloy.

PubMed

Wang, Pan; Wu, Lihong; Feng, Yan; Bai, Jiaming; Zhang, Baicheng; Song, Jie; Guan, Shaokang

2017-03-01

The Ti-15Zr-5Cr-2Al alloy has been developed and various heat treatments have been investigated to develop new biomedical materials. It is found that the heat treatment conditions strongly affect the phase constitutions and mechanical properties. The as-cast specimen is comprised of β phase and a small fraction of α phase, which is attributed to the suppression of ω phase caused by adding Al. A high yield strength of 1148±36MPa and moderate Young's modulus of 96±3GPa are obtained in the as-cast specimen. Besides the β phase and α phase, ω phase is also detected in the air cooled and liquid nitrogen quenched specimens, which increases the Young's modulus and lowers the ductility. In contrast, only β phase is detected after ice water quenching. The ice water quenched specimen exhibits a good combination of mechanical properties with a high microhardness of 302±10HV, a large plastic strain of 23±2%, a low Young's modulus of 58±4GPa, a moderate yield strength of 625±32MPa and a high compressive strength of 1880±59MPa. Moreover, the elastic energies of the ice water quenched specimen (3.22MJ/m 3 ) and as-cast specimen (6.86MJ/m 3 ) are higher than that of c.p. Ti (1.25MJ/m 3 ). These results demonstrate that as-cast and ice water quenched Ti-15Zr-5Cr-2Al alloys with a superior combination of mechanical properties are potential materials for biomedical applications. Copyright © 2016 Elsevier B.V. All rights reserved.

A new model for simulating 3-d crystal growth and its application to the study of antifreeze proteins.

PubMed

Wathen, Brent; Kuiper, Michael; Walker, Virginia; Jia, Zongchao

2003-01-22

A novel computational technique for modeling crystal formation has been developed that combines three-dimensional (3-D) molecular representation and detailed energetics calculations of molecular mechanics techniques with the less-sophisticated probabilistic approach used by statistical techniques to study systems containing millions of molecules undergoing billions of interactions. Because our model incorporates both the structure of and the interaction energies between participating molecules, it enables the 3-D shape and surface properties of these molecules to directly affect crystal formation. This increase in model complexity has been achieved while simultaneously increasing the number of molecules in simulations by several orders of magnitude over previous statistical models. We have applied this technique to study the inhibitory effects of antifreeze proteins (AFPs) on ice-crystal formation. Modeling involving both fish and insect AFPs has produced results consistent with experimental observations, including the replication of ice-etching patterns, ice-growth inhibition, and specific AFP-induced ice morphologies. Our work suggests that the degree of AFP activity results more from AFP ice-binding orientation than from AFP ice-binding strength. This technique could readily be adapted to study other crystal and crystal inhibitor systems, or to study other noncrystal systems that exhibit regularity in the structuring of their component molecules, such as those associated with the new nanotechnologies.

The Emergence of Life as a First-Order Phase Transition

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mathis, Cole; Bhattacharya, Tanmoy; Walker, Sara Imari

It is well known that life on Earth alters its environment over evolutionary and geological timescales. An important open question is whether this is a result of evolutionary optimization or a universal feature of life. In the latter case, the origin of life would be coincident with a shift in environmental conditions. Here in this paper we present a model for the emergence of life in which replicators are explicitly coupled to their environment through the recycling of a finite supply of resources. The model exhibits a dynamic, first-order phase transition from nonlife to life, where the life phase ismore » distinguished by selection on replicators. We show that environmental coupling plays an important role in the dynamics of the transition. The transition corresponds to a redistribution of matter in replicators and their environment, driven by selection on replicators, exhibiting an explosive growth in diversity as replicators are selected. The transition is accurately tracked by the mutual information shared between replicators and their environment. In the absence of successfully repartitioning system resources, the transition fails to complete, leading to the possibility of many frustrated trials before life first emerges. Often, the replicators that initiate the transition are not those that are ultimately selected. The results are consistent with the view that life's propensity to shape its environment is indeed a universal feature of replicators, characteristic of the transition from nonlife to life. We discuss the implications of these results for understanding life's emergence and evolutionary transitions more broadly.« less

The Emergence of Life as a First-Order Phase Transition

DOE PAGES

Mathis, Cole; Bhattacharya, Tanmoy; Walker, Sara Imari

2017-03-01

It is well known that life on Earth alters its environment over evolutionary and geological timescales. An important open question is whether this is a result of evolutionary optimization or a universal feature of life. In the latter case, the origin of life would be coincident with a shift in environmental conditions. Here in this paper we present a model for the emergence of life in which replicators are explicitly coupled to their environment through the recycling of a finite supply of resources. The model exhibits a dynamic, first-order phase transition from nonlife to life, where the life phase ismore » distinguished by selection on replicators. We show that environmental coupling plays an important role in the dynamics of the transition. The transition corresponds to a redistribution of matter in replicators and their environment, driven by selection on replicators, exhibiting an explosive growth in diversity as replicators are selected. The transition is accurately tracked by the mutual information shared between replicators and their environment. In the absence of successfully repartitioning system resources, the transition fails to complete, leading to the possibility of many frustrated trials before life first emerges. Often, the replicators that initiate the transition are not those that are ultimately selected. The results are consistent with the view that life's propensity to shape its environment is indeed a universal feature of replicators, characteristic of the transition from nonlife to life. We discuss the implications of these results for understanding life's emergence and evolutionary transitions more broadly.« less

The Emergence of Life as a First-Order Phase Transition

NASA Astrophysics Data System (ADS)

Mathis, Cole; Bhattacharya, Tanmoy; Imari Walker, Sara

2017-03-01

It is well known that life on Earth alters its environment over evolutionary and geological timescales. An important open question is whether this is a result of evolutionary optimization or a universal feature of life. In the latter case, the origin of life would be coincident with a shift in environmental conditions. Here we present a model for the emergence of life in which replicators are explicitly coupled to their environment through the recycling of a finite supply of resources. The model exhibits a dynamic, first-order phase transition from nonlife to life, where the life phase is distinguished by selection on replicators. We show that environmental coupling plays an important role in the dynamics of the transition. The transition corresponds to a redistribution of matter in replicators and their environment, driven by selection on replicators, exhibiting an explosive growth in diversity as replicators are selected. The transition is accurately tracked by the mutual information shared between replicators and their environment. In the absence of successfully repartitioning system resources, the transition fails to complete, leading to the possibility of many frustrated trials before life first emerges. Often, the replicators that initiate the transition are not those that are ultimately selected. The results are consistent with the view that life's propensity to shape its environment is indeed a universal feature of replicators, characteristic of the transition from nonlife to life. We discuss the implications of these results for understanding life's emergence and evolutionary transitions more broadly.

ICE/ISEE plasma wave data analysis

NASA Technical Reports Server (NTRS)

Greenstadt, E. W.; Moses, S. L.

1993-01-01

This report is one of the final processing of ICE plasma wave (pw) data and analysis of late ISEE 3, ICE cometary, and ICE cruise trajectory data, where coronal mass ejections (CME's) were the first locus of attention. Interest in CME's inspired an effort to represent our pw data in a condensed spectrogram format that facilitated rapid digestion of interplanetary phenomena on long (greater than 1 day) time scales. The format serendipitously allowed us to also examine earth-orbiting data from a new perspective, invigorating older areas of investigation in Earth's immediate environment. We, therefore, continued to examine with great interest the last year of ISEE 3's precomet phase, when it spent considerable time far downwind from Earth, recording for days on end conditions upstream, downstream, and across the very weak, distant flank bow shock. Among other motivations has been the apparent similarity of some shock and post shock structures to the signatures of the bow wave surrounding comet Giacobini-Zinner, whose ICE-phase data we revisited.

Light Scattering by Gaussian Particles: A Solution with Finite-Difference Time Domain Technique

NASA Technical Reports Server (NTRS)

Sun, W.; Nousiainen, T.; Fu, Q.; Loeb, N. G.; Videen, G.; Muinonen, K.

2003-01-01

The understanding of single-scattering properties of complex ice crystals has significance in atmospheric radiative transfer and remote-sensing applications. In this work, light scattering by irregularly shaped Gaussian ice crystals is studied with the finite-difference time-domain (FDTD) technique. For given sample particle shapes and size parameters in the resonance region, the scattering phase matrices and asymmetry factors are calculated. It is found that the deformation of the particle surface can significantly smooth the scattering phase functions and slightly reduce the asymmetry factors. The polarization properties of irregular ice crystals are also significantly different from those of spherical cloud particles. These FDTD results could provide a reference for approximate light-scattering models developed for irregular particle shapes and can have potential applications in developing a much simpler practical light scattering model for ice clouds angular-distribution models and for remote sensing of ice clouds and aerosols using polarized light. (copyright) 2003 Elsevier Science Ltd. All rights reserved.

The effect of single-horn glaze ice on the vortex structures in the wake of a horizontal axis wind turbine

NASA Astrophysics Data System (ADS)

Jin, Zhe-Yan; Dong, Qiao-Tian; Yang, Zhi-Gang

2015-02-01

The present study experimentally investigated the effect of a simulated single-horn glaze ice accreted on rotor blades on the vortex structures in the wake of a horizontal axis wind turbine by using the stereoscopic particle image velocimetry (Stereo-PIV) technique. During the experiments, four horizontal axis wind turbine models were tested, and both "free-run" and "phase-locked" Stereo-PIV measurements were carried out. Based on the "free-run" measurements, it was found that because of the simulated single-horn glaze ice, the shape, vorticity, and trajectory of tip vortices were changed significantly, and less kinetic energy of the airflow could be harvested by the wind turbine. In addition, the "phase-locked" results indicated that the presence of simulated single-horn glaze ice resulted in a dramatic reduction of the vorticity peak of the tip vortices. Moreover, as the length of the glaze ice increased, both root and tip vortex gaps were found to increase accordingly.

Multicentennial record of Labrador Sea primary productivity and sea-ice variability archived in coralline algal barium

PubMed Central

Chan, P.; Halfar, J.; Adey, W.; Hetzinger, S.; Zack, T.; Moore, G.W.K.; Wortmann, U. G.; Williams, B.; Hou, A.

2017-01-01

Accelerated warming and melting of Arctic sea-ice has been associated with significant increases in phytoplankton productivity in recent years. Here, utilizing a multiproxy approach, we reconstruct an annually resolved record of Labrador Sea productivity related to sea-ice variability in Labrador, Canada that extends well into the Little Ice Age (LIA; 1646 AD). Barium-to-calcium ratios (Ba/Ca) and carbon isotopes (δ13C) measured in long-lived coralline algae demonstrate significant correlations to both observational and proxy records of sea-ice variability, and show persistent patterns of co-variability broadly consistent with the timing and phasing of the Atlantic Multidecadal Oscillation (AMO). Results indicate reduced productivity in the Subarctic Northwest Atlantic associated with AMO cool phases during the LIA, followed by a step-wise increase from 1910 to present levels—unprecedented in the last 363 years. Increasing phytoplankton productivity is expected to fundamentally alter marine ecosystems as warming and freshening is projected to intensify over the coming century. PMID:28569839

Coupled laboratory experiments and numerical models for generating ice-depth profiles of steady-state hydrogen peroxide concentrations on radiolytically processed icy worlds.

NASA Astrophysics Data System (ADS)

Hand, K. P.; Carlson, R. W.

2007-12-01

The presence of hydrogen peroxide and condensed phase molecular oxygen on the surface of Europa is now well established [1,2] and laboratory experiments have repeatedly demonstrated the viability of various radiolytic processes for explaining the observations [see e.g. 3, 4]. To date, however, both the Europa observations and the laboratory work have been limited to only the upper few, or few tens of microns, of ice. The spectrum of charged particles incident on the surface of Europa penetrates deeper, and deposits energy over a much greater range, than any laboratory experiment has aimed to replicate [5, 6]. Here we present results from laboratory work on hydrogen peroxide production using energetic electrons (4 keV - 16 keV) and couple these results with a numerical model for the integrated steady-state density of hydrogen peroxide as a function of depth into the ice. Production rates and steady-state peroxide levels for a range of initial electron energies are used to generate functions for the number of peroxide molecules produced per initial electron as it penetrates through the ice. We examined the electron energy spectrum from 0.01 MeV to 10 MeV and accounted for electrons incident to the surface over the solid angle from cosine(theta) = 0.3-1.0, where theta is the angle from the normal to the surface. We found that, accounting for production and destruction as a function of energy deposition, steady-state hydrogen peroxide concentrations resulting from electron radiolysis likely increases by a factor of a few to an order of magnitude at a depth of a few hundred microns. In other words, the 0.13 percent by number abundance of peroxide observed by NIMS [1] may be a low-end value; at depth the peroxide concentration could increase to a few percent by number relative to water. [1] Carlson et al. 1999. [2] Spencer and Calvin, 2002. [3] Moore and Hudson, 2000. [4] Loeffler et al., 2006. [5] Cooper et al., 2001 [6] Paranicas et al., 2001.

Relationship between macroscopic and microphysical properties for mixed-phase and ice clouds over the Southern Ocean in ORCAS campaign

NASA Astrophysics Data System (ADS)

Diao, M.; Jensen, J. B.

2017-12-01

Mixed-phase and ice clouds play very important roles in regulating the atmospheric radiation over the Southern Ocean. Previously, in-situ observations over this remote region are limited, and a few of the available observation-based analyses mainly focused on the cloud microphysical properties. The relationship between macroscopic and microphysical properties for both mixed-phase and ice clouds have not been thoroughly investigated based on in-situ observations. In this work, the aircraft-based observations from the NSF O2/N2 Ratio and CO2 Airborne Southern Ocean (ORCAS) field campaign (Jan - Feb 2016) will be used to analyze the cloud macroscopic properties on the microscale to mesoscale, including the distributions of cloud chord length, the patchiness of clouds, and the spatial ratios of adjacent cloud segments in mixed phase and pure ice phase. In addition, these macroscopic properties will be analyzed in relation to the relative humidity (RH) background, such as the average and maximum RH inside clouds, as well as the probability density function (PDF) of in-cloud RH. We found that the clouds with larger horizontal scales are often associated with larger magnitudes of average and maximum in-cloud RH values. In addition, when decomposing the contributions from the spatial variabilities of water vapor and temperature to the variability of RH, the water vapor heterogeneities are found to have the most dominant impact on RH variability. Sensitivities of the cloud macroscopic and microphysical properties to the horizontal resolutions of the observations will be shown, including the impacts on the patchiness of clouds, cloud fraction, frequencies of ice supersaturation, and the PDFs of RH. These sensitivity analyses will provide useful information on the comparisons among multi-scale observations and simulations.

Geochronological (OSL) and geomorphological investigations at the presumed Frankfurt ice marginal position in northeast Germany

NASA Astrophysics Data System (ADS)

Hardt, Jacob; Lüthgens, Christopher; Hebenstreit, Robert; Böse, Margot

2016-12-01

The Weichselian Frankfurt ice marginal position in northeast Germany has been critically discussed in the past owing to weak morphological evidence and a lack of clear sedimentological records. This study aims to contribute to this discussion with new geochronological and geomorphological results. Apart from very few cosmogenic exposure ages, the time frame is to date still based on long distance correlation with radiocarbon chronologies. We selected a study site in a key position regarding the classic location of the Frankfurt ice marginal position and the recently described arcuate ridge structures on the Barnim plateau. For the first time we present Optically Stimulated Luminescence (OSL) ages of quartz from glaciofluvial deposits for this Weichselian phase. Our results indicate an advance of the Scandinavian Ice Sheet (SIS) at around 34.1 ± 4.6 ka. This is in agreement with OSL ages from sandur deposits at the Brandenburg ice marginal position located farther south and could also be correlated with the Klintholm advance in Denmark. The subsequent meltdown phase lasted until around 26.3 ± 3.7 ka. During the meltdown phase a minor oscillation of the SIS caused the formation of the recently described arcuate ridges on the Barnim till plain. Recalculated surface exposure ages of glacigenic boulders with an updated global production rate indicate a landscape stabilization phase at around 22.7 ± 1.6 ka, which is in agreement with our ages. A phase of strong aeolian activity has been dated with OSL to 1 ± 0.1 ka; this may have been triggered by human activities that are documented in this region for the medieval period.

Simulation of air-droplet mixed phase flow in icing wind-tunnel

NASA Astrophysics Data System (ADS)

Mengyao, Leng; Shinan, Chang; Menglong, Wu; Yunhang, Li

2013-07-01

Icing wind-tunnel is the main ground facility for the research of aircraft icing, which is different from normal wind-tunnel for its refrigeration system and spraying system. In stable section of icing wind-tunnel, the original parameters of droplets and air are different, for example, to keep the nozzles from freezing, the droplets are heated while the temperature of air is low. It means that complex mass and heat transfer as well as dynamic interactive force would happen between droplets and air, and the parameters of droplet will acutely change along the passageway. Therefore, the prediction of droplet-air mixed phase flow is necessary in the evaluation of icing researching wind-tunnel. In this paper, a simplified droplet-air mixed phase flow model based on Lagrangian method was built. The variation of temperature, diameter and velocity of droplet, as well as the air flow field, during the flow process were obtained under different condition. With calculating three-dimensional air flow field by FLUENT, the droplet could be traced and the droplet distribution could also be achieved. Furthermore, the patterns about how initial parameters affect the parameters in test section were achieved. The numerical simulation solving the flow and heat and mass transfer characteristics in the mixing process is valuable for the optimization of experimental parameters design and equipment adjustment.

Multiple Nonconformities in Ice-Walled Lake Successions Indicate Periods with Cold Summers (24.4 - 22.5 ka, 21.1 - 19.2 ka, 18.5 - 18.1 ka) during the Last Deglaciation in Northeastern Illinois, USA

NASA Astrophysics Data System (ADS)

Curry, B. B.

2014-12-01

Unprecedented age control on many last glacial stratigraphic units and morainal ice-margin positions are interpreted from AMS radiocarbon ages of tundra plant macrofossils archived in low-relief ice-walled lake plain (IWLP) deposits the Lake Michigan Lobe (south-central Laurentide Ice Sheet). IWLPs are periglacial features that formed on morainal dead-ice permafrost. Lacustrine sediment, and the fossils contained therein, had physical and temporal proximity to the glacier which formed the underlying moraine. In modern ice-walled lakes, as the lake's ice cover begins to melt, moats form which allows access of sloughing tundra-mantled active layer sediment (soil) into the lakes. Multiple AMS ages from two sites with proglacial sediment buried by glacial max LIS diamicton, and IWLPs reveal evidence of episodic plant growth and sedimentation including ca. 24.0 to 24.4 ka (post Shelby Phase), 22.5 to 21.1 ka (post Livingston Phase), 18.1 to 17.4 ka (post Woodstock Phase). Although presently based on negative evidence, the associated nonconformities (listed in title) indicate periods when cold conditions did not promote development of the estival moat. Although the evidence does not preclude tundra growth during the cold summers, there was little landscape modification due to limited thawing of the active layer. At approximately the onset of the 19.2-18.5 "warm" period, at least two large deglacial discharge events flooded the Fox and Kankakee tributary valleys of the Illinois River. The latter, known as the Kankakee Torrent, occurred at 19.05 - 18.85 ka (σ1 range) at the Oswego channel complex. The temporal coincidence of the torrents and sedimentation in ice-walled lakes suggests that the post-Livingston Phase nonconformity (21.1 - 19.2 ka) was a period of lessened meltwater discharge through subglacial conduits (tunnel valleys) as the frozen toe promoted formation of subglacial lakes, buildup of pore-water pressures, and the release of subglacial water as "torrents". In the case of the Fox and Kankakee torrents, ice-marginal discharge first flowed into proglacial lakes which ultimately breached moraines, resulting in catastrophic "torrents". Hence, present knowledge does not allow determination of the nature of the subglacial release (catastrophic vs. large, steady discharge).

Chromosome dynamics in the yeast interphase nucleus.

PubMed

Heun, P; Laroche, T; Shimada, K; Furrer, P; Gasser, S M

2001-12-07

Little is known about the dynamics of chromosomes in interphase nuclei. By tagging four chromosomal regions with a green fluorescent protein fusion to lac repressor, we monitored the movement and subnuclear position of specific sites in the yeast genome, sampling at short time intervals. We found that early and late origins of replication are highly mobile in G1 phase, frequently moving at or faster than 0.5 micrometers/10 seconds, in an energy-dependent fashion. The rapid diffusive movement of chromatin detected in G1 becomes constrained in S phase through a mechanism dependent on active DNA replication. In contrast, telomeres and centromeres provide replication-independent constraint on chromatin movement in both G1 and S phases.

Backscatter for Ice Sheet 2 Growth Phase in the Winter 1994 Winter Sea Ice Experiment

NASA Technical Reports Server (NTRS)

Nghiem, S. V.

1996-01-01

None. This is raw data from a data set taken during the CRRELEX94 experiment. The data are polarimetric C-band radar measurements of a saline ice sheet grown in the outdoor Geophysical Research Facility at the Cold Regions Research and Engineering Lab. See references for other descriptions of data.

Constraints on Martian Aerosol Particles Using MGS/TES and HST Data: Shapes

NASA Astrophysics Data System (ADS)

Wolff, M. J.; Clancy, R. T.; Pitman, K. M.; Bell, J. F.; James, P. B.

2001-12-01

In order to constrain the shape of water ice and dust aerosols, we have combined a numerical approach for axisymmetric particle shapes, i.e., cylinders, disks, spheroids (Waterman's T-Matrix approach as improved by Mishchenko and collaborators; cf., Mishchenko et al. 1997, JGR, 102, D14, 16,831), with a multiple-scattering radiative transfer algorithm. We utilize a two-stage iterative process. First, we empirically derive a scattering phase function for each aerosol component from radiative transfer models of Mars Global Surveyor Thermal Emission Spectrometer Emission Phase Function (EPF) sequences. Next, we perform a series of scattering calculations, adjusting our parameters to arrive at a ``best-fit'' theoretical phase function. It is important to note that in addition to randomly-oriented particles, we explicitly consider the possibility of (partially) aligned aerosol particles as well. Thus far, we have been analyzing the three empirically-derived presented by Clancy et al. (this meeting): dust, Type I ice particles (effective radii ~ 1-2 microns), and Type II ice particles (effective radii ~ 3-4 microns). We find that the ``dust'' phase function is best fit by randomly-oriented cylinders with an axial ratio (D/L = diameter-to-length) of either 2.3 or 0.6. Similarly, the shape of the Type II ice curve is reasonably reproduced by randomly-oriented spheroids with an axial ratio of either 0.7 or 1.4. However, neither of the two shapes (nor that of spheres or randomly-oriented hexagonal prisms) can reproduce the phase function derived for the Type I ice. This led to the direct consideration of oriented or aligned particles. which, at least qualitatively, have the ability to account for the phase function shapes for both Type I and II ice particles. The difference between these two phase functions may represent the degree of alignment, with the Type II particles being much less-aligned. The calculations for partially aligned particles is quite numerically intensive and this avenue of research is currently in progress. Additional work is also being done to further constrain the dust aerosol properties using both TES visible/IR and Hubble Space Telescope UV-NIR spectroscopy/imaging data of the recent (and ongoing) Martian global dust storm. Our work has been supported through NASA (MDAP) grant NAG5-9820, (MED) JPL contract 961471, STScI GO programs #8577 and #9052.

Ice pack heat sink subsystem - phase 1, volume 2

NASA Technical Reports Server (NTRS)

Roebelen, G. J., Jr.

1973-01-01

The design, development, and test of a functional laboratory model ice pack heat sink subsystem are discussed. Operating instructions to include mechanical and electrical schematics, maintenance instructions, and equipment specifications are presented.

Universal monopole scaling near transitions from the Coulomb phase.

PubMed

Powell, Stephen

2012-08-10

Certain frustrated systems, including spin ice and dimer models, exhibit a Coulomb phase at low temperatures, with power-law correlations and fractionalized monopole excitations. Transitions out of this phase, at which the effective gauge theory becomes confining, provide examples of unconventional criticality. This Letter studies the behavior at nonzero monopole density near such transitions, using scaling theory to arrive at universal expressions for the crossover phenomena. For a particular transition in spin ice, quantitative predictions are made by mapping to the XY model and confirmed using Monte Carlo simulations.

UV PHOTODESORPTION OF METHANOL IN PURE AND CO-RICH ICES: DESORPTION RATES OF THE INTACT MOLECULE AND OF THE PHOTOFRAGMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bertin, Mathieu; Doronin, Mikhail; Philippe, Laurent

2016-02-01

Wavelength-dependent photodesorption rates have been determined using synchrotron radiation for condensed pure and mixed methanol ice in the 7–14 eV range. The VUV photodesorption of intact methanol molecules from pure methanol ices is found to be of the order of 10{sup −5} molecules/photon, that is two orders of magnitude below what is generally used in astrochemical models. This rate gets even lower (<10{sup −6} molecules/photon) when the methanol is mixed with CO molecules in the ices. This is consistent with a picture in which photodissociation and recombination processes are at the origin of intact methanol desorption from pure CH{sub 3}OHmore » ices. Such low rates are explained by the fact that the overall photodesorption process is dominated by the desorption of the photofragments CO, CH{sub 3}, OH, H{sub 2}CO, and CH{sub 3}O/CH{sub 2}OH, whose photodesorption rates are given in this study. Our results suggest that the role of the photodesorption as a mechanism to explain the observed gas phase abundances of methanol in cold media is probably overestimated. Nevertheless, the photodesorption of radicals from methanol-rich ices may stand at the origin of the gas phase presence of radicals such as CH{sub 3}O, therefore, opening new gas phase chemical routes for the formation of complex molecules.« less

The East Antarctic Ice Sheet and the Gamburtsev Subglacial Mountains (Invited)

NASA Astrophysics Data System (ADS)

Bell, R. E.; Studinger, M.; Ferraccioli, F.; Damaske, D.; Finn, C.; Braaten, D. A.; Fahnestock, M. A.; Jordan, T. A.; Corr, H.; Elieff, S.; Frearson, N.; Block, A. E.; Rose, K.

2009-12-01

Models of the onset of glaciation in Antarctica routinely document the early growth of the ice sheet on the summit of the Gamburtsev Subglacial Mountains in the center of the East Antarctic Craton. While ice sheet models replicate the formation of the East Antarctic ice sheet 35 million years ago, the age, evolution and structure of the Gamburtsev Mountains remain completely unresolved. During the International Polar Year scientists from seven nations have launched a major collaborative program (AGAP) to explore the Gamburtsev Subglacial Mountains buried by the East Antarctic ice sheet and bounded by numerous subglacial lakes. The AGAP umbrella is a multi-national, multi-disciplinary effort and includes aerogeophysics, passive seismology, traverse programs and will be complimented by future ice core and bedrock drilling. A major new airborne data set including gravity; magnetics; ice thickness; SAR images of the ice-bed interface; near-surface and deep internal layers; and ice surface elevation is providing insights into a more dynamic East Antarctica. More than 120,000 km of aerogeophysical data have been acquired from two remote field camps during the 2008/09 field season. AGAP effort was designed to address several fundamental questions including: 1) What role does topography play in the nucleation of continental ice sheets? 2) How do tectonic processes control the formation, distribution, and stability of subglacial lakes? The preliminary analysis of this major new data set indicated these 3000m high mountains are deeply dissected by a dendritic system. The northern margin of the mountain range terminates against the inland extent of the Lambert Graben. Evidence of the onset of glaciation is preserved as cirques and U shaped valleys along the axis of the uplifted massifs. The geomorphology reflects the interaction between the ice sheet and the Gamburtsev Mountains. Bright reflectors in the radar data in the deep valleys indicate the presence of water that has the potential to influence ice sheet flow. Crevassing and disrupted internal layers are present in the deep ice found in the inland extent of the Lambert Graben. Preliminary analysis indicates both a more dynamic East Antarctic ice sheet and a more complex tectonic evolution for East Antarctica.

IR spectral studies of the formation of prebiological organic molecules in ion-bombarded ices

NASA Astrophysics Data System (ADS)

Hudson, R.; Moore, M.

To better understand the formation of C- and CN-containing molecules in cold cosmic environments we have performed a variety of processing experiments on icy mixtures. We will discuss details of condensed-phase synthetic pathways for several acids, alcohols, and aldehydes. For N2 -rich ices containing CH4 , we will show that several CN-bonded acids are easily formed. We will compare carbonic and formic acid production in H O-, CO- and CO2 -dominated ices.2 Condensed-phase pathways for the synthesis of several alcohols including methanol and ethylene glycol, along with several aldehydes including formaldehyde and acetaldehyde, will be discussed. While warming irradiated ices, IR spectra help track the formation of new species from, for example, radical or acid-base reactions, and the loss of species due to vaporization. These experiments demonstrate that condensed-phase reactions lead to cometary and interstellar molecules of varying volatilities. Several newly synthesized species are particularly relevant to recent radio detections, and are of high interest to astronomers and astrobiologists. This research is funded through NRA 344-33-01 and 344-02-57.

Peripheral re-localization of constitutive heterochromatin advances its replication timing and impairs maintenance of silencing marks.

PubMed

Heinz, Kathrin S; Casas-Delucchi, Corella S; Török, Timea; Cmarko, Dusan; Rapp, Alexander; Raska, Ivan; Cardoso, M Cristina

2018-05-10

The replication of the genome is a highly organized process, both spatially and temporally. Although a lot is known on the composition of the basic replication machinery, how its activity is regulated is mostly unknown. Several chromatin properties have been proposed as regulators, but a potential role of the nuclear DNA position remains unclear. We made use of the prominent structure and well-defined heterochromatic landscape of mouse pericentric chromosome domains as a well-studied example of late replicating constitutive heterochromatin. We established a method to manipulate its nuclear position and evaluated the effect on replication timing, DNA compaction and epigenetic composition. Using time-lapse microscopy, we observed that constitutive heterochromatin, known to replicate during late S-phase, was replicated in mid S-phase when repositioned to the nuclear periphery. Out-of-schedule replication resulted in deficient post-replicative maintenance of chromatin modifications, namely silencing marks. We propose that repositioned constitutive heterochromatin was activated in trans according to the domino model of origin firing by nearby (mid S) firing origins. In summary, our data provide, on the one hand, a novel approach to manipulate nuclear DNA position and, on the other hand, establish nuclear DNA position as a novel mechanism regulating DNA replication timing and epigenetic maintenance.

The variability of tropical ice cloud properties as a function of the large-scale context from ground-based radar-lidar observations over Darwin, Australia

NASA Astrophysics Data System (ADS)

Protat, A.; Delanoë, J.; May, P. T.; Haynes, J.; Jakob, C.; O'Connor, E.; Pope, M.; Wheeler, M. C.

2011-08-01

The high complexity of cloud parameterizations now held in models puts more pressure on observational studies to provide useful means to evaluate them. One approach to the problem put forth in the modelling community is to evaluate under what atmospheric conditions the parameterizations fail to simulate the cloud properties and under what conditions they do a good job. It is the ambition of this paper to characterize the variability of the statistical properties of tropical ice clouds in different tropical "regimes" recently identified in the literature to aid the development of better process-oriented parameterizations in models. For this purpose, the statistical properties of non-precipitating tropical ice clouds over Darwin, Australia are characterized using ground-based radar-lidar observations from the Atmospheric Radiation Measurement (ARM) Program. The ice cloud properties analysed are the frequency of ice cloud occurrence, the morphological properties (cloud top height and thickness), and the microphysical and radiative properties (ice water content, visible extinction, effective radius, and total concentration). The variability of these tropical ice cloud properties is then studied as a function of the large-scale cloud regimes derived from the International Satellite Cloud Climatology Project (ISCCP), the amplitude and phase of the Madden-Julian Oscillation (MJO), and the large-scale atmospheric regime as derived from a long-term record of radiosonde observations over Darwin. The vertical variability of ice cloud occurrence and microphysical properties is largest in all regimes (1.5 order of magnitude for ice water content and extinction, a factor 3 in effective radius, and three orders of magnitude in concentration, typically). 98 % of ice clouds in our dataset are characterized by either a small cloud fraction (smaller than 0.3) or a very large cloud fraction (larger than 0.9). In the ice part of the troposphere three distinct layers characterized by different statistically-dominant microphysical processes are identified. The variability of the ice cloud properties as a function of the large-scale atmospheric regime, cloud regime, and MJO phase is large, producing mean differences of up to a factor 8 in the frequency of ice cloud occurrence between large-scale atmospheric regimes and mean differences of a factor 2 typically in all microphysical properties. Finally, the diurnal cycle of the frequency of occurrence of ice clouds is also very different between regimes and MJO phases, with diurnal amplitudes of the vertically-integrated frequency of ice cloud occurrence ranging from as low as 0.2 (weak diurnal amplitude) to values in excess of 2.0 (very large diurnal amplitude). Modellers should now use these results to check if their model cloud parameterizations are capable of translating a given atmospheric forcing into the correct statistical ice cloud properties.

Experimental investigation of ice slurry flow pressure drop in horizontal tubes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grozdek, Marino; Khodabandeh, Rahmatollah; Lundqvist, Per

2009-01-15

Pressure drop behaviour of ice slurry based on ethanol-water mixture in circular horizontal tubes has been experimentally investigated. The secondary fluid was prepared by mixing ethyl alcohol and water to obtain initial alcohol concentration of 10.3% (initial freezing temperature -4.4 C). The pressure drop tests were conducted to cover laminar and slightly turbulent flow with ice mass fraction varying from 0% to 30% depending on test conditions. Results from flow tests reveal much higher pressure drop for higher ice concentrations and higher velocities in comparison to the single phase flow. However for ice concentrations of 15% and higher, certain velocitymore » exists at which ice slurry pressure drop is same or even lower than for single phase flow. It seems that higher ice concentration delay flow pattern transition moment (from laminar to turbulent) toward higher velocities. In addition experimental results for pressure drop were compared to the analytical results, based on Poiseulle and Buckingham-Reiner models for laminar flow, Blasius, Darby and Melson, Dodge and Metzner, Steffe and Tomita for turbulent region and general correlation of Kitanovski which is valid for both flow regimes. For laminar flow and low buoyancy numbers Buckingham-Reiner method gives good agreement with experimental results while for turbulent flow best fit is provided with Dodge-Metzner and Tomita methods. Furthermore, for transport purposes it has been shown that ice mass fraction of 20% offers best ratio of ice slurry transport capability and required pumping power. (author)« less

Heterogeneous ice nucleation of viscous secondary organic aerosol produced from ozonolysis of α-pinene

NASA Astrophysics Data System (ADS)

Ignatius, Karoliina; Kristensen, Thomas B.; Järvinen, Emma; Nichman, Leonid; Fuchs, Claudia; Gordon, Hamish; Herenz, Paul; Hoyle, Christopher R.; Duplissy, Jonathan; Garimella, Sarvesh; Dias, Antonio; Frege, Carla; Höppel, Niko; Tröstl, Jasmin; Wagner, Robert; Yan, Chao; Amorim, Antonio; Baltensperger, Urs; Curtius, Joachim; Donahue, Neil M.; Gallagher, Martin W.; Kirkby, Jasper; Kulmala, Markku; Möhler, Ottmar; Saathoff, Harald; Schnaiter, Martin; Tomé, Antonio; Virtanen, Annele; Worsnop, Douglas; Stratmann, Frank

2016-05-01

There are strong indications that particles containing secondary organic aerosol (SOA) exhibit amorphous solid or semi-solid phase states in the atmosphere. This may facilitate heterogeneous ice nucleation and thus influence cloud properties. However, experimental ice nucleation studies of biogenic SOA are scarce. Here, we investigated the ice nucleation ability of viscous SOA particles. The SOA particles were produced from the ozone initiated oxidation of α-pinene in an aerosol chamber at temperatures in the range from -38 to -10 °C at 5-15 % relative humidity with respect to water to ensure their formation in a highly viscous phase state, i.e. semi-solid or glassy. The ice nucleation ability of SOA particles with different sizes was investigated with a new continuous flow diffusion chamber. For the first time, we observed heterogeneous ice nucleation of viscous α-pinene SOA for ice saturation ratios between 1.3 and 1.4 significantly below the homogeneous freezing limit. The maximum frozen fractions found at temperatures between -39.0 and -37.2 °C ranged from 6 to 20 % and did not depend on the particle surface area. Global modelling of monoterpene SOA particles suggests that viscous biogenic SOA particles are indeed present in regions where cirrus cloud formation takes place. Hence, they could make up an important contribution to the global ice nucleating particle budget.

What Determines the Ice Polymorph in Clouds?

PubMed

Hudait, Arpa; Molinero, Valeria

2016-07-20

Ice crystals in the atmosphere nucleate from supercooled liquid water and grow by vapor uptake. The structure of the ice polymorph grown has strong impact on the morphology and light scattering of the ice crystals, modulates the amount of water vapor in ice clouds, and can impact the molecular uptake and reactivity of atmospheric aerosols. Experiments and molecular simulations indicate that ice nucleated and grown from deeply supercooled liquid water is metastable stacking disordered ice. The ice polymorph grown from vapor has not yet been determined. Here we use large-scale molecular simulations to determine the structure of ice that grows as a result of uptake of water vapor in the temperature range relevant to cirrus and mixed-phase clouds, elucidate the molecular mechanism of the formation of ice at the vapor interface, and compute the free energy difference between cubic and hexagonal ice interfaces with vapor. We find that vapor deposition results in growth of stacking disordered ice only under conditions of extreme supersaturation, for which a nonequilibrium liquid layer completely wets the surface of ice. Such extreme conditions have been used to produce stacking disordered frost ice in experiments and may be plausible in the summer polar mesosphere. Growth of ice from vapor at moderate supersaturations in the temperature range relevant to cirrus and mixed-phase clouds, from 200 to 260 K, produces exclusively the stable hexagonal ice polymorph. Cubic ice is disfavored with respect to hexagonal ice not only by a small penalty in the bulk free energy (3.6 ± 1.5 J mol(-1) at 260 K) but also by a large free energy penalty at the ice-vapor interface (89.7 ± 12.8 J mol(-1) at 260 K). The latter originates in higher vibrational entropy of the hexagonal-terminated ice-vapor interface. We predict that the free energy penalty against the cubic ice interface should decrease strongly with temperature, resulting in some degree of stacking disorder in ice grown from vapor in the tropical tropopause layer, and in polar stratospheric and noctilucent clouds. Our findings support and explain the evolution of the morphology of ice crystals from hexagonal to trigonal symmetry with decreasing temperature, as reported by experiments and in situ measurements in clouds. We conclude that selective growth of the elusive cubic ice polymorph by manipulation of the interfacial properties can likely be achieved at the ice-liquid interface but not at the ice-vapor interface.

Two-phase convection in Ganymede's high-pressure ice layer - Implications for its geological evolution

NASA Astrophysics Data System (ADS)

Kalousová, Klára; Sotin, Christophe; Choblet, Gaël; Tobie, Gabriel; Grasset, Olivier

2018-01-01

Ganymede, the largest moon in the solar system, has a fully differentiated interior with a layer of high-pressure (HP) ice between its deep ocean and silicate mantle. In this paper, we study the dynamics of this layer using a numerical model of two-phase ice-water mixture in two-dimensional Cartesian geometry. While focusing on the generation of water at the silicate/HP ice interface and its upward migration towards the ocean, we investigate the effect of bottom heat flux, the layer thickness, and the HP ice viscosity and permeability. Our results suggest that melt can be generated at the silicate/HP ice interface for small layer thickness ( ≲ 200 km) and high values of heat flux ( ≳ 20 mW m-2) and viscosity ( ≳ 1015 Pa s). Once generated, the water is transported through the layer by the upwelling plumes. Depending on the vigor of convection, it stays liquid or it may freeze before melting again as the plume reaches the temperate (partially molten) layer at the boundary with the ocean. The thickness of this layer as well as the amount of melt that is extracted from it is controlled by the permeability of the HP ice. This process constitutes a means of transporting volatiles and salts that might have dissolved into the melt present at the silicate/HP ice interface. As the moon cools down, the HP ice layer becomes less permeable because the heat flux from the silicates decreases and the HP ice layer thickens.

Phase relations of natural 65 year SST variations, ocean sea level variations over 260 years, and Arctic sea-ice retreat of the satellite era - issues of cause and effect.

NASA Astrophysics Data System (ADS)

Asten, Michael

2017-04-01

We study sea level variations over the past 300yr in order to quantify what fraction of variations may be considered cyclic, and what phase relations exist with respect to those cycles. The 64yr cycle detected by Chambers et al (2012) is found in the 1960-2000 data set which Hamlington et al (2013) interpreted as an expression of the PDO; we show that fitting a 64yr cycle is a better fit, accounting for 92% of variance. In a 300yr GMSL tide guage record Jeverejeva et al (2008) identified a 60-65yr cycle superimposed on an upward trend from 1800CE. Using break-points and removal of centennial trends identified by Kemp et al (2015), we produce a detrended GMSL record for 1700-2000CE which emphasizes the 60-65yr oscillations. A least-square fit using a 64yr period cosine yields an amplitude 12mm and origin at year 1958.6, which accounts for 30% of the variance. A plot of the cosine against the entire length of the 300yr detrended GMSL record shows a clear phase lock for the interval 1740 to 2000CE, denoting either a very consistent timing of an internally generated natural variation, or adding to evidence for an external forcing of astronomical origin (Scafetta 2012, 2013). Barcikowska et al (2016) have identified a 65yr cyclic variation in sea surface temperature in the first multidecadal component of Multi- Channel Singular Spectrum Analysis (MSSA) on the Hadley SST data set (RC60). A plot of RC60 versus our fitted cosine shows the phase shift to be 16 yr, close to a 90 degree phase lag of GMSL relative to RC60. This is the relation to be expected for a simple low-pass or integrating filter, which suggests that cyclic natural variations in sea-surface temperature drive similar variations in GMSL. We compare the extent of Arctic sea-ice using the time interval of 1979- 2016 (window of satellite imagery). The decrease in summer ice cover has been subject of many predictions as to when summer ice will reach zero. The plot of measured ice area can be fitted with many speculative curves, and we show three such best fit curves, a parabola (zero ice cover by 2028), a linear fit (zero by 2060) and a 64yr period cosine, where the cosine is a shape chosen as a hypothesis, given the relation we observe between SST natural variations and 260 years of detrended sea level data. The cosine best fit shows a maximum ice coverage in 1985.6 and predicted minimum in 2017.6, which compares with the detrended sea level cyclic component minimum at 1990.6 and predicted maximum at 2023.6CE. Thus the sea-ice retreat lags RC60 by about 10 yr or 60deg in phase. The consistent phase of sea-level change over 260yr, and the phase lags of sea-ice retreat and sea-level change relative to the natural 65yr cyclic component of SST, have implications in the debate over internal versus external drivers of the cyclic components of change, and in hypotheses on cause and effect of the non-anthropogenic components of change.

The Backscatter Cloudprobe with Polarization Detection: A New Aircraft Ice Water Detector

NASA Astrophysics Data System (ADS)

Freer, M.; Baumgardner, D.; Axisa, D.

2017-12-01

The differentiation of liquid water and ice crystals smaller than 100 um in mixed phase clouds continues to challenge the cloud measurement community. In situ imaging probes now have pixel resolution down to about 5 um, but at least 10 pixels are needed to accurately distinguish a water droplet from an ice crystal. This presents a major obstacle for the understanding of cloud glaciation in general, and the formation and evolution of cloud ice in particular. A new sensor has recently been developed that can detect and quantify supercooled liquid droplets and ice crystals. The Backscatter Cloudprobe with Polarization Detection (BCPD) is a very lightweight, compact and low power optical spectrometer that has already undergone laboratory, wind tunnel and flight tests that have validated its capabilities. The BCPD employs the optical approach with single particles that has been used for years in remote sensing to distinguish liquid water from ice crystals in ensembles of cloud particles. The sensor is mounted inside an aircraft and projects a linearly polarized laser beam to the outside through a heated window. Particles that pass through the sample volume of the laser scatter light and the photons scattered in the back direction pass through another heated window where they are collected and focused onto a beam splitter that directs them onto two photodetectors. The P-detector senses the light with polarization parallel to that of the incident light and the S-Detector measures the light that is perpendicular to that of the laser. The polarization ratio, S/P, is sensitive to the asphericity of a particle and is used to identify liquid water and ice crystals. The BCPD has now been exercised in an icing wind tunnel where it was compared with other cloud spectrometers. It has also been flown on the NCAR C-130 and on a commercial Citation, making measurements in all water, all ice and mixed phase clouds. Results from these three applications clearly show that the BCPD can be employed successfully to derive ice fraction in mixed phase clouds at sizes less than 50 um, a size range that has previously been inaccessible to cloud researchers.

Determining River Ice Displacement Using the Differential Interferometry Synthetic Aperture Radar (D-InSAR) technique

NASA Astrophysics Data System (ADS)

Chu, T.; Lindenschmidt, K. E.

2016-12-01

Monitoring river ice cover dynamics during the course of winter is necessary to comprehend possible negative effects of ice on anthropogenic systems and natural ecosystems to provide a basis to develop mitigation measures. Due to their large scale and limited accessibility to most places along river banks, especially in northern regions, remote sensing techniques are a suitable approach for monitoring river ice regimes. Additionally, determining the vertical displacements of ice covers due to changes in flow provides an indication of vulnerable areas to initial cracking and breakup of the ice cover. Such information is paramount when deciding on suitable locations for winter road crossing along rivers. A number of RADARSAT-2 (RS-2) beam modes (i.e. Wide Fine, Wide Ultra-Fine, Wide Fine Quad Polarization and Spotlight) and D-InSAR methods were examined in this research to characterize slant range and vertical displacement of ice covers along the Slave River in the Northwest Territories, Canada. Our results demonstrate that the RS-2 Spotlight beam mode, processed by the Multiple Aperture InSAR (MAI) method, outperformed other beam modes and conventional InSAR when characterizing spatio-temporal patterns of ice surface fluctuations. For example, the MAI based Spotlight differential interferogram derived from the January and February 2016 images of the Slave River Delta resulted in a slant range displacement of the ice surface between -3.3 and +3.6 cm (vertical displacement between -4.3 and +4.8 cm), due to the changes in river flow and river ice morphology between the two acquisition dates. It is difficult to monitor the ice movement in early and late winter periods due to the loss of phase coherence and error in phase unwrapping. These findings are consistent with our river ice hydraulic modelling and visual interpretation of the river ice processes under different hydrometeorological conditions and river ice morphology. An extension of this study is planned to incorporate the results of ice cover displacement (rise/drop) to locate areas of initial breakup in an ice jam forecasting system. Keywords: D-InSAR, Mutiple Aperture Radar InSAR (MAI), river ice displacement, RADARSAT-2

The scaffold protein Nde1 safeguards the brain genome during S phase of early neural progenitor differentiation

PubMed Central

Houlihan, Shauna L; Feng, Yuanyi

2014-01-01

Successfully completing the S phase of each cell cycle ensures genome integrity. Impediment of DNA replication can lead to DNA damage and genomic disorders. In this study, we show a novel function for NDE1, whose mutations cause brain developmental disorders, in safeguarding the genome through S phase during early steps of neural progenitor fate restrictive differentiation. Nde1 mutant neural progenitors showed catastrophic DNA double strand breaks concurrent with the DNA replication. This evoked DNA damage responses, led to the activation of p53-dependent apoptosis, and resulted in the reduction of neurons in cortical layer II/III. We discovered a nuclear pool of Nde1, identified the interaction of Nde1 with cohesin and its associated chromatin remodeler, and showed that stalled DNA replication in Nde1 mutants specifically occurred in mid-late S phase at heterochromatin domains. These findings suggest that NDE1-mediated heterochromatin replication is indispensible for neuronal differentiation, and that the loss of NDE1 function may lead to genomic neurological disorders. DOI: http://dx.doi.org/10.7554/eLife.03297.001 PMID:25245017

Poly(ADP-ribose) binding to Chk1 at stalled replication forks is required for S-phase checkpoint activation

NASA Astrophysics Data System (ADS)

Min, Wookee; Bruhn, Christopher; Grigaravicius, Paulius; Zhou, Zhong-Wei; Li, Fu; Krüger, Anja; Siddeek, Bénazir; Greulich, Karl-Otto; Popp, Oliver; Meisezahl, Chris; Calkhoven, Cornelis F.; Bürkle, Alexander; Xu, Xingzhi; Wang, Zhao-Qi

2013-12-01

Damaged replication forks activate poly(ADP-ribose) polymerase 1 (PARP1), which catalyses poly(ADP-ribose) (PAR) formation; however, how PARP1 or poly(ADP-ribosyl)ation is involved in the S-phase checkpoint is unknown. Here we show that PAR, supplied by PARP1, interacts with Chk1 via a novel PAR-binding regulatory (PbR) motif in Chk1, independent of ATR and its activity. iPOND studies reveal that Chk1 associates readily with the unperturbed replication fork and that PAR is required for efficient retention of Chk1 and phosphorylated Chk1 at the fork. A PbR mutation, which disrupts PAR binding, but not the interaction with its partners Claspin or BRCA1, impairs Chk1 and the S-phase checkpoint activation, and mirrors Chk1 knockdown-induced hypersensitivity to fork poisoning. We find that long chains, but not short chains, of PAR stimulate Chk1 kinase activity. Collectively, we disclose a previously unrecognized mechanism of the S-phase checkpoint by PAR metabolism that modulates Chk1 activity at the replication fork.

Distinct but Concerted Roles of ATR, DNA-PK, and Chk1 in Countering Replication Stress during S Phase

PubMed Central

Buisson, Rémi; Boisvert, Jessica L.; Benes, Cyril H.; Zou, Lee

2015-01-01

The ATR-Chk1 pathway is critical for DNA damage responses and cell cycle progression. Chk1 inhibition is more deleterious to cycling cells than ATR inhibition, raising questions about ATR and Chk1 functions in the absence of extrinsic replication stress. Here, we show that a key role of ATR in S phase is to coordinate RRM2 accumulation and origin firing. ATR inhibitor (ATRi) induces massive ssDNA accumulation and replication catastrophe in a fraction of early S-phase cells. In other S-phase cells, however, ATRi induces moderate ssDNA and triggers a DNA-PK and Chk1-mediated backup pathway to suppress origin firing. The backup pathway creates a threshold such that ATRi selectively kills cells under high replication stress, whereas Chk1 inhibitor induces cell death at a lower threshold. The levels of ATRi-induced ssDNA correlate with ATRi sensitivity in a panel of cell lines, suggesting that ATRi-induced ssDNA could be predictive of ATRi sensitivity in cancer cells. PMID:26365377

Water-Rock Differentiation of Icy Bodies by Darcy law, Stokes law, and Two-Phase Flow

NASA Astrophysics Data System (ADS)

Neumann, Wladimir; Breuer, Doris; Spohn, Tilman

2016-10-01

The early Solar system produced a variety of bodies with different properties. Among the small bodies, objects that contain notable amounts of water ice are of particular interest. Water-rock separation on such worlds is probable and has been confirmed in some cases. We couple accretion and water-rock separation in a numerical model. The model is applicable to Ceres, icy satellites, and Kuiper belt objects, and is suited to assess the thermal metamorphism of the interior and the present-day internal structures. The relative amount of ice determines the differentiation regime according to porous flow or Stokes flow. Porous flow considers differentiation in a rock matrix with a small degree of ice melting and is typically modelled either with the Darcy law or two-phase flow. We find that for small icy bodies two-phase flow differs from the Darcy law. Velocities derived from two-phase flow are at least one order of magnitude smaller than Darcy velocities. The latter do not account for the matrix resistance against the deformation and overestimate the separation velocity. In the Stokes regime that should be used for large ice fractions, differentiation is at least four orders of magnitude faster than porous flow with the parameters used here.

Effects of drop freezing on microphysics of an ascending cloud parcel under biomass burning conditions

NASA Astrophysics Data System (ADS)

Diehl, K.; Simmel, M.; Wurzler, S.

There is some evidence that the initiation of warm rain is suppressed in clouds over regions with vegetation fires. Thus, the ice phase becomes important as another possibility to initiate precipitation. Numerical simulations were performed to investigate heterogeneous drop freezing for a biomass-burning situation. An air parcel model with a sectional two-dimensional description of the cloud microphysics was employed with parameterizations for immersion and contact freezing which consider the different ice nucleating efficiencies of various ice nuclei. Three scenarios were simulated resulting to mixed-phase or completely glaciated clouds. According to the high insoluble fraction of the biomass-burning particles drop freezing via immersion and contact modes was very efficient. The preferential freezing of large drops followed by riming (i.e. the deposition of liquid drops on ice particles) and the evaporation of the liquid drops (Bergeron-Findeisen process) caused a further decrease of the liquid drops' effective radius in higher altitudes. In turn ice particle sizes increased so that they could serve as germs for graupel or hailstone formation. The effects of ice initiation on the vertical cloud dynamics were fairly significant leading to a development of the cloud to much higher altitudes than in a warm cloud without ice formation.

Validation of Quasi-Invariant Ice Cloud Radiative Quantities with MODIS Satellite-Based Cloud Property Retrievals

NASA Technical Reports Server (NTRS)

Ding, Jiachen; Yang, Ping; Kattawar, George W.; King, Michael D.; Platnick, Steven; Meyer, Kerry G.

2017-01-01

Similarity relations applied to ice cloud radiance calculations are theoretically analyzed and numerically validated. If t(1v) and t(1vg) are conserved where t is optical thickness, v the single-scattering albedo, and g the asymmetry factor, it is possible that substantially different phase functions may give rise to similar radiances in both conservative and non-conservative scattering cases, particularly in the case of large optical thicknesses. In addition to theoretical analysis, this study uses operational ice cloud optical thickness retrievals from the Moderate Resolution Imaging Spectroradiometer (MODIS) Level 2 Collection5 (C5) and Collection 6 (C6) cloud property products to verify radiative similarity relations. It is found that, if the MODIS C5 and C6 ice cloud optical thickness values are multiplied by their respective (1wg)factors, the resultant products referred to as the effective optical thicknesses become similar with their ratio values around unity. Furthermore, the ratios of the C5 and C6 ice cloud effective optical thicknesses display an angular variation pattern similar to that of the corresponding ice cloud phase function ratios. The MODIS C5 and C6 values of ice cloud similarity parameter, defined as [(1w)(1(exp. 1/2)wg)]12, also tend to be similar.

Pressure-Induced Melting of Confined Ice.

PubMed

Sotthewes, Kai; Bampoulis, Pantelis; Zandvliet, Harold J W; Lohse, Detlef; Poelsema, Bene

2017-12-26

The classic regelation experiment of Thomson in the 1850s deals with cutting an ice cube, followed by refreezing. The cutting was attributed to pressure-induced melting but has been challenged continuously, and only lately consensus emerged by understanding that compression shortens the O:H nonbond and lengthens the H-O bond simultaneously. This H-O elongation leads to energy loss and lowers the melting point. The hot debate survived well over 150 years, mainly due to a poorly defined heat exchange with the environment in the experiment. In our current experiment, we achieved thermal isolation from the environment and studied the fully reversible ice-liquid water transition for water confined between graphene and muscovite mica. We observe a transition from two-dimensional (2D) ice into a quasi-liquid phase by applying a pressure exerted by an atomic force microscopy tip. At room temperature, the critical pressure amounts to about 6 GPa. The transition is completely reversible: refreezing occurs when the applied pressure is lifted. The critical pressure to melt the 2D ice decreases with temperature, and we measured the phase coexistence line between 293 and 333 K. From a Clausius-Clapeyron analysis, we determine the latent heat of fusion of two-dimensional ice at 0.15 eV/molecule, being twice as large as that of bulk ice.

Abundant Methanol Ice toward a Massive Young Stellar Object in the Central Molecular Zone

NASA Astrophysics Data System (ADS)

An, Deokkeun; Sellgren, Kris; Boogert, A. C. Adwin; Ramírez, Solange V.; Pyo, Tae-Soo

2017-07-01

Previous radio observations revealed widespread gas-phase methanol (CH3OH) in the Central Molecular Zone (CMZ) at the Galactic center (GC), but its origin remains unclear. Here, we report the discovery of CH3OH ice toward a star in the CMZ, based on a Subaru 3.4-4.0 μm spectrum, aided by NASA/IRTF L\\prime imaging and 2-4 μm spectra. The star lies ˜8000 au away in projection from a massive young stellar object (MYSO). Its observed high CH3OH ice abundance (17 % +/- 3 % relative to H2O ice) suggests that the 3.535 μm CH3OH ice absorption likely arises in the MYSO’s extended envelope. However, it is also possible that CH3OH ice forms with a higher abundance in dense clouds within the CMZ, compared to within the disk. Either way, our result implies that gas-phase CH3OH in the CMZ can be largely produced by desorption from icy grains. The high solid CH3OH abundance confirms the prominent 15.4 μm shoulder absorption observed toward GC MYSOs arises from CO2 ice mixed with CH3OH. Based in part on data collected at Subaru Telescope, which is operated by the National Astronomical Observatory of Japan.

Kinetic Monte Carlo simulations of water ice porosity: extrapolations of deposition parameters from the laboratory to interstellar space.

PubMed

Clements, Aspen R; Berk, Brandon; Cooke, Ilsa R; Garrod, Robin T

2018-02-21

Dust grains in cold, dense interstellar clouds build up appreciable ice mantles through the accretion and subsequent surface chemistry of atoms and molecules from the gas. These mantles, of thicknesses on the order of 100 monolayers, are primarily composed of H 2 O, CO, and CO 2 . Laboratory experiments using interstellar ice analogues have shown that porosity could be present and can facilitate diffusion of molecules along the inner pore surfaces. However, the movement of molecules within and upon the ice is poorly described by current chemical kinetics models, making it difficult either to reproduce the formation of experimental porous ice structures or to extrapolate generalized laboratory results to interstellar conditions. Here we use the off-lattice Monte Carlo kinetics model MIMICK to investigate the effects that various deposition parameters have on laboratory ice structures. The model treats molecules as isotropic spheres of a uniform size, using a Lennard-Jones potential. We reproduce experimental trends in the density of amorphous solid water (ASW) for varied deposition angle, rate and surface temperature; ice density decreases when the incident angle or deposition rate is increased, while increasing temperature results in a more-compact water ice. The models indicate that the density behaviour at higher temperatures (≥80 K) is dependent on molecular rearrangement resulting from thermal diffusion. To reproduce trends at lower temperatures, it is necessary to take account of non-thermal diffusion by newly-adsorbed molecules, which bring kinetic energy both from the gas phase and from their acceleration into a surface binding site. Extrapolation of the model to conditions appropriate to protoplanetary disks, in which direct accretion of water from the gas-phase may be the dominant ice formation mechanism, indicate that these ices may be less porous than laboratory ices.

Unveiling climate and ice-sheet history from drilling in high-latitude margins and future perspectives

NASA Astrophysics Data System (ADS)

Escutia Dotti, Carlota

2010-05-01

Polar ice is an important component of the climate system, affecting global sea level, ocean circulation and heat transport, marine productivity, and albedo. During the last decades drilling in the Arctic (IODP ACEX and Bering Expeditions) and in Antarctica (ODP Legs 178, 188, IODP Expedition 318 and ANDRILL) has revealed regional information about sea ice and ice sheets development and evolution. Integration of this data with numerical modeling provide an understanding of the early development of the ice sheets and their variability through the Cenozoic. Much of this work points to atmospheric CO2 and other greenhouse gases concentrations as important triggering mechanism driving the onset of glaciation and subsequent ice volume variability. With current increasing atmospheric greenhouse gases concentrations resulting in rapidly rising global temperatures, studies of polar climates become increasingly prominent on the research agenda. Despite of the relevance of the high-latitudes in the global climate systems, the short- and long-term history of the ice sheets and sea-ice and its relationships with paleoclimatic, paleoceanographic, and sea level changes is still poorly understood. A multinational, multiplatform scientific drilling strategy is being developed to recover key physical evidence from selected high-latitude areas. This strategy is aimed at addressing key knowledge gaps about the role of polar ice in climate change, targeting questions such as timing of events, rates of change, tipping points, regional variations, and northern vs. southern hemispheres (in phase or out-of-phase) variability. This data is critical to provide constrains to sea-ice and ice sheet models, which are the basis for forecasting the future of the cryosphere in a warming world.

CLB5-dependent activation of late replication origins in S. cerevisiae.

PubMed

Donaldson, A D; Raghuraman, M K; Friedman, K L; Cross, F R; Brewer, B J; Fangman, W L

1998-08-01

Replication origins in chromosomes are activated at specific times during the S phase. We show that the B-type cyclins are required for proper execution of this temporal program. clb5 cells activate early origins but not late origins, explaining the previously described long clb5 S phase. Origin firing appears normal in cIb6 mutants. In clb5 clb6 double mutant cells, the late origin firing defect is suppressed, accounting for the normal duration of the phase despite its delayed onset. Therefore, Clb5p promotes the timely activation of early and late origins, but Clb6p can activate only early origins. In clb5 clb6 mutants, the other B-type cyclins (Clb1-4p) promote an S phase during which both early and late replication origins fire.

Particle backscatter and relative humidity measured across cirrus clouds and comparison with state-of-the-art cirrus modelling

NASA Astrophysics Data System (ADS)

Brabec, M.; Wienhold, F. G.; Luo, B.; Vömel, H.; Immler, F.; Steiner, P.; Peter, T.

2012-04-01

Advanced measurement and modelling techniques are employed to determine the partitioning of atmospheric water between the gas phase and the condensed phase in and around cirrus clouds, and thus to identify in-cloud and out-of-cloud supersaturations with respect to ice. In November 2008 the newly developed balloon-borne backscatter sonde COBALD (Compact Optical Backscatter and AerosoL Detector) was flown 14 times together with a CFH (Cryogenic Frost point Hygrometer) from Lindenberg, Germany (52° N, 14° E). The case discussed here in detail shows two cirrus layers with in-cloud relative humidities with respect to ice between 50% and 130%. Global operational analysis data of ECMWF (roughly 1° × 1° horizontal and 1 km vertical resolution, 6-hourly stored fields) fail to represent ice water contents and relative humidities. Conversely, regional COSMO-7 forecasts (6.6 km × 6.6 km, 5-min stored fields) capture the measured humidities and cloud positions remarkably well. The main difference between ECMWF and COSMO data is the resolution of small-scale vertical features responsible for cirrus formation. Nevertheless, ice water contents in COSMO-7 are still off by factors 2-10, likely reflecting limitations in COSMO's ice phase bulk scheme. Significant improvements can be achieved by comprehensive size-resolved microphysical and optical modelling along backward trajectories based on COSMO-7 wind and temperature fields, which allow accurate computation of humidities, ice particle size distributions and backscatter ratios at the COBALD wavelengths. However, only by superimposing small-scale temperature fluctuations, which remain unresolved by the NWP models, can we obtain a satisfying agreement with the observations and reconcile the measured in-cloud non-equilibrium humidities with conventional ice cloud microphysics.

Airplane Ice Detector Based on a Microwave Transmission Line

NASA Technical Reports Server (NTRS)

Ngo, Phong; Arndt, G. Dickey; Carl, James R.

2004-01-01

An electronic instrument that could detect the potentially dangerous buildup of ice on an airplane wing is undergoing development. The instrument is based on a microwave transmission line configured as a capacitance probe: at selected spots, the transmission-line conductors are partly exposed to allow any ice and/or liquid water present at those spots to act as predominantly capacitive electrical loads on the transmission line. These loads change the input impedance of the transmission line, as measured at a suitable excitation frequency. Thus, it should be possible to infer the presence of ice and/or liquid water from measurements of the input impedance and/or electrical parameters related to the input impedance. The sensory transmission line is of the microstrip type and thus thin enough to be placed on an airplane wing without unduly disturbing airflow in flight. The sensory spots are small areas from which the upper layer of the microstrip has been removed to allow any liquid water or ice on the surface to reach the transmission line. The sensory spots are spaced at nominal open-circuit points, which are at intervals of a half wavelength (in the transmission line, not in air) at the excitation frequency. The excitation frequency used in the experiments has been 1 GHz, for which a half wavelength in the transmission line is .4 in. (.10 cm). The figure depicts a laboratory prototype of the instrument. The impedance-related quantities chosen for use in this version of the instrument are the magnitude and phase of the scattering parameter S11 as manifested in the in-phase (I ) and quadrature (Q) outputs of the phase detector. By careful layout of the transmission line (including the half-wavelength sensor spacing), one can ensure that the amplitude and phase of the input to the phase detector keep shifting in the same direction as ice forms on one or more of the sensor areas. Although only one transmission-line sensor strip is used in the laboratory version, in a practical application, it could be desirable to install multiple strips on different areas to detect localized icing. In that case, a multiplexer should be used to connect the various strips to the phase detector for sequential measurements. Experiments have been performed with freezing and thawing of water and of water/glycol mixtures. The experiments have shown that, whether or not glycol is present, it is possible to distinguish between liquid water and ice via the I and Q outputs; in particular, the equipment can be adjusted so that when water freezes, I decreases and Q increases. With respect to the operation of this instrument, the main effect of glycol is to increase the freezing or thawing time.

Laboratory studies of VUV photochemistry of water ice: measurements of photodesorption rates and implication for Polar Mesospheric Clouds

NASA Astrophysics Data System (ADS)

Kulikov, Mikhail; Feigin, Alexander; Ignatov, Stanislav; Sennikov, Petr; Schrems, Otto

Polar Mesospheric Clouds (PMC) are the highest clouds of the Earth's atmosphere. They are formed during summer at middle to high latitudes in an altitude range between 80 and 90 km when the air temperature drops below 150K. The particles of PMC consist primarily of ice [1] and are formed as a result of water vapor condensation. In the day time, PMC are subjected to strong solar Lyman -α irradiation with the wavelength of 121.6 nm which penetrates into ice particles and is absorbed essentially. This leads to photodissociation of H2 O molecules and to formation of mobile and chemically active components in the solid phase. As a result, a whole spectrum of physicochemical processes can be initiated inside the particles: diffusion of primary products, chemical formation of secondary products, accumulation of both type of products in the ice matrix and their escaping into gas-phase. Murray and Plane [2] hypothesized that the last process is dominant, i.e. each Lyman -α photon absorbed by a particle of PMC results in the ejection of one H atom and one OH radical into gas phase that provides essential enhancement of HOx concentration with a corresponding increase in Ox removal. Nevertheless, they justly pointed to the need of laboratory measurements of the H and OH yield from ice under conditions pertinent to the summer mesosphere. We have carried out first laboratory studies of water ice photochemistry to acquiring knowledge about physicochemical processes inside particles of PMC initiated by solar irradiation. The experimental set-up used includes a high-vacuum chamber, a gas-inlet system, a refrigerator-cryostat with temperature controller, a FTIR spectrometer, a vacuum ultraviolet hydrogen lamp and a microwave generator. This work presents results of measurements of the absolute photodesorption rate (loss of substance due to the escape of photoproducts into gas phase) from thin (20-100nm) water ice samples at temperatures of 120-150 K. The data obtained demonstrate that the flow of photoproducts into the gas phase is essentially less as predicted by Murray and Plane [2]. Nearly all the photoproducts remain in the solid phase, and the principal chemical reaction between them is the recombination reaction H+OH->H2O which is evidently very fast. 1. M. Hervig, R.E. Thompson, M. McHugh, L.L. Gordley, J.M. Russell III, and M.E. Sum-mers, First confirmation that water ice is the primary component of polar mesospheric clouds, Geophys. Res. Lett., 28, 971-974, 2001. 2. B.J. Murray and J.M.C. Plane, Modelling the impact of noctilucent cloud formation on atomic oxygen and other minor constituents of the summer mesosphere, Atmos. Chem. Phys., 5, 1027-1038, 2005.

Cyclophilin B facilitates the replication of Orf virus.

PubMed

Zhao, Kui; Li, Jida; He, Wenqi; Song, Deguang; Zhang, Ximu; Zhang, Di; Zhou, Yanlong; Gao, Feng

2017-06-15

Viruses interact with host cellular factors to construct a more favourable environment for their efficient replication. Expression of cyclophilin B (CypB), a cellular peptidyl-prolyl cis-trans isomerase (PPIase), was found to be significantly up-regulated. Recently, a number of studies have shown that CypB is important in the replication of several viruses, including Japanese encephalitis virus (JEV), hepatitis C virus (HCV) and human papillomavirus type 16 (HPV 16). However, the function of cellular CypB in ORFV replication has not yet been explored. Suppression subtractive hybridization (SSH) technique was applied to identify genes differentially expressed in the ORFV-infected MDBK cells at an early phase of infection. Cellular CypB was confirmed to be significantly up-regulated by quantitative reverse transcription-PCR (qRT-PCR) analysis and Western blotting. The role of CypB in ORFV infection was further determined using Cyclosporin A (CsA) and RNA interference (RNAi). Effect of CypB gene silencing on ORFV replication by 50% tissue culture infectious dose (TCID 50 ) assay and qRT-PCR detection. In the present study, CypB was found to be significantly up-regulated in the ORFV-infected MDBK cells at an early phase of infection. Cyclosporin A (CsA) exhibited suppressive effects on ORFV replication through the inhibition of CypB. Silencing of CypB gene inhibited the replication of ORFV in MDBK cells. In conclusion, these data suggest that CypB is critical for the efficient replication of the ORFV genome. Cellular CypB was confirmed to be significantly up-regulated in the ORFV-infected MDBK cells at an early phase of infection, which could effectively facilitate the replication of ORFV.

Cold basal conditions during surges control flow of fringing Arctic ice caps in Greenland

NASA Astrophysics Data System (ADS)

Cook, Samuel; Christoffersen, Poul; Todd, Joe; Palmer, Steven

2017-04-01

Fringing ice caps separated from larger ice sheets are rarely studied, yet they are an important part of earth's cryosphere, which has become the largest source of global sea-level rise. Understanding marginal ice caps is crucial for being able to predict sea-level change as they are responsible for up to 20% of Greenland's mass loss for 2003-2008. Studies of fringing ice caps can furthermore provide useful insights into processes operating on glaciers that surge. Surging has been the focus of much recent glaciological work, especially with reference to thermal evolution of polythermal glaciers in High Mountain Asia and the High Arctic. This has shown that the classic divide between hydrologically-controlled surges ('hard-bed') in Alaska and thermally-regulated ('soft-bed') surges elsewhere is less stark than previously assumed. Studying marginal ice caps can therefore be valuable in several ways. The largest fringing ice cap in Greenland is Flade Isblink. Previous work has established that this ice cap is showing a range of dynamic behaviour, including subglacial lake drainage and varied patterns of mass-balance change. In particular, a substantial surge, assumed to be caused by a version of the thermally-regulated mechanism, occurred between 1996 and 2000, making the ice cap a useful case study for investigating this process. Here we investigate the surge on Flade Isblink using the open-source, Full-Stokes model Elmer/Ice to invert for basal conditions and englacial temperatures using the adjoint method. We specifically study steady-state conditions representative of the active surge phase in 2000, and the subsequent quiescent phase, using patterns of surface velocity observed in 2000, 2005, 2008 and 2015. Under constant geometry, temperature and geothermal heat, it is shown that surging increases basal freezing rates by over 60% across an area that is twice as large as the area over which the bed freezes in the quiescent phase. The process responsible for this is the conductive heat loss, which increases faster than frictional heat is produced. When the bed becomes weaker, basal conditions become colder despite faster basal sliding, resulting in steep basal ice temperature gradients, which transfer heat effectively from the bed into the ice. In contrast, we find the increase in frictional heat to be insufficient, because weaker basal conditions offset the effect of faster basal sliding. Hence, frictional heat cannot provide enough extra melting to maintain surge conditions. We hypothesise that this heat transfer mechanism terminates surges on Flade Isblink, irrespective of any thinning that would also occur. The latter is not included in our model, but is required in the classic soft-bed surge model. In the quiescent phase, lower temperature gradients reduce the conductive heat loss, while a stronger bed produces more frictional heat, favouring basal melting and a warm bed, which ultimately create the weak basal conditions that result in yet another surge, regardless of any change in ice thickness. Our results indicate that soft-bed surges may occur even if the surge-related change in glacier geometry is modest, making surging glaciers of this type similar to ice streams that stagnate and reactivate periodically.

The chemical composition of cirrus forming aerosol: Lessons from the MACPEX field study

NASA Astrophysics Data System (ADS)

Cziczo, D. J.; Froyd, K. D.; Murphy, D. M.

2012-12-01

Cirrus clouds are an important factor in the Earth's climate system. These clouds exert a large radiative forcing due to their extensive global coverage and high altitude despite minimal physical and optical thickness. During the Mid-latitude Aerosol and Cloud Properties EXperiment (MACPEX) we measured chemical and physical properties of the aerosols on which cirrus ice crystals formed in situ and in real time using a laser ablation single particle mass spectrometry technique deployed aboard the NASA WB-57 research aircraft. Ice residual particles were also collected for off-line laboratory investigation including electron microscopy. Flights spanned from the Gulf of Mexico to the mid-latitudes over the United States. In most cases heterogeneous freezing was the inferred mechanism of cloud formation and aerosol composition had a significant impact on the nucleation of the ice phase. Mineral dust and some metallic particles were highly enhanced in the ice phase when compared to their abundance outside of cloud. Particles such as soot and biological material, previously suggested as ice nuclei, were not found either due to an inability to nucleate ice or low abundance. Atmospheric implications of these measurements and more advanced future analyses will be discussed.

Design and Construction of an Ice-in-Tank Diurnal Ice Storage for the PX Building at Fort Stewart, GA

DTIC Science & Technology

1988-07-01

of a Eutectic Salt System 16 0 11 Energy Characteristics of Fort Stewart PX on a Hot Day 21 12 Peak Day Load Profile for Fort Stewart 21 13 Chiller...at Yuma Proving Ground, AZ in FY 88. An ice-shucking and a eutectic salt DIS cooling system are scheduled to be installed in the coming years. The...water, ice, or freezing eutectic salt . Ice and salt systems can be grouped • together as phase-change systems. In a recent survey of over a hundred

Some fundamental properties and reactions of ice surfaces at low temperatures.

PubMed

Park, Seong-Chan; Moon, Eui-Seong; Kang, Heon

2010-10-14

Ice surfaces offer a unique chemical environment in which reactions occur quite differently from those in liquid water or gas phases. In this article, we examine the basic properties of ice surfaces below the surface premelting temperature and discuss some of the recent investigations carried out on reactions at the ice surfaces. The static and dynamic properties of an ice surface as a reaction medium, such as its structure, molecule diffusion and proton transfer dynamics, and the surface preference of hydronium and hydroxide ions, are discussed in relation to the reactivity of the surface.

Glass polymorphism in glycerol–water mixtures: II. Experimental studies

PubMed Central

Bachler, Johannes; Fuentes-Landete, Violeta; Jahn, David A.; Wong, Jessina; Giovambattista, Nicolas

2016-01-01

We report a detailed experimental study of (i) pressure-induced transformations in glycerol–water mixtures at T = 77 K and P = 0–1.8 GPa, and (ii) heating-induced transformations of glycerol–water mixtures recovered at 1 atm and T = 77 K. Our samples are prepared by cooling the solutions at ambient pressure at various cooling rates (100 K s–1–10 K h–1) and for the whole range of glycerol mole fractions, χ g. Depending on concentration and cooling rates, cooling leads to samples containing amorphous ice (χ g ≥ 0.20), ice (χ g ≤ 0.32), and/or “distorted ice” (0 < χ g ≤ 0.38). Upon compression, we find that (a) fully vitrified samples at χ g ≥ 0.20 do not show glass polymorphism, in agreement with previous works; (b) samples containing ice show pressure-induced amorphization (PIA) leading to the formation of high-density amorphous ice (HDA). PIA of ice domains within the glycerol–water mixtures is shown to be possible only up to χ g ≈ 0.32 (T = 77 K). This is rather surprising since it has been known that at χ g < 0.38, cooling leads to phase-separated samples with ice and maximally freeze-concentrated solution of χ g ≈ 0.38. Accordingly, in the range 0.32 < χ g < 0.38, we suggest that the water domains freeze into an interfacial ice, i.e., a highly-distorted form of layered ice, which is unable to transform to HDA upon compression. Upon heating samples recovered at 1 atm, we observe a rich phase behavior. Differential scanning calorimetry indicates that only at χ g ≤ 0.15, the water domains within the sample exhibit polyamorphism, i.e., the HDA-to-LDA (low-density amorphous ice) transformation. At 0.15 < χ g ≤ 0.38, samples contain ice, interfacial ice, and/or HDA domains. All samples (χ g ≤ 0.38) show: the crystallization of amorphous ice domains, followed by the glass transition of the vitrified glycerol–water domains and, finally, the melting of ice at high temperatures. Our work exemplifies the complex “phase” behavior of glassy binary mixtures due to phase-separation (ice formation) and polyamorphism, and the relevance of sample preparation, concentration as well as cooling rates. The presence of the distorted ice (called “interphase” by us) also explains the debated “drift anomaly” upon melting. These results are compatible with the high-pressure study by Suzuki and Mishima indicating disappearance of polyamorphism at P ≈ 0.03–0.05 GPa at χ g ≈ 0.12–0.15 [J. Chem. Phys., 2014, 141, 094505]. PMID:27044677

Local Cloudiness Development Forecast Based on Simulation of Solid Phase Formation Processes in the Atmosphere

NASA Astrophysics Data System (ADS)

Barodka, Siarhei; Kliutko, Yauhenia; Krasouski, Alexander; Papko, Iryna; Svetashev, Alexander; Turishev, Leonid

2013-04-01

Nowadays numerical simulation of thundercloud formation processes is of great interest as an actual problem from the practical point of view. Thunderclouds significantly affect airplane flights, and mesoscale weather forecast has much to contribute to facilitate the aviation forecast procedures. An accurate forecast can certainly help to avoid aviation accidents due to weather conditions. The present study focuses on modelling of the convective clouds development and thunder clouds detection on the basis of mesoscale atmospheric processes simulation, aiming at significantly improving the aeronautical forecast. In the analysis, the primary weather radar information has been used to be further adapted for mesoscale forecast systems. Two types of domains have been selected for modelling: an internal one (with radius of 8 km), and an external one (with radius of 300 km). The internal domain has been directly applied to study the local clouds development, and the external domain data has been treated as initial and final conditions for cloud cover formation. The domain height has been chosen according to the civil aviation forecast data (i.e. not exceeding 14 km). Simulations of weather conditions and local clouds development have been made within selected domains with the WRF modelling system. In several cases, thunderclouds are detected within the convective clouds. To specify the given category of clouds, we employ a simulation technique of solid phase formation processes in the atmosphere. Based on modelling results, we construct vertical profiles indicating the amount of solid phase in the atmosphere. Furthermore, we obtain profiles demonstrating the amount of ice particles and large particles (hailstones). While simulating the processes of solid phase formation, we investigate vertical and horizontal air flows. Consequently, we attempt to separate the total amount of solid phase into categories of small ice particles, large ice particles and hailstones. Also, we strive to reveal and differentiate the basic atmospheric parameters of sublimation and coagulation processes, aiming to predict ice particles precipitation. To analyze modelling results we apply the VAPOR three-dimensional visualization package. For the chosen domains, a diurnal synoptic situation has been simulated, including rain, sleet, ice pellets, and hail. As a result, we have obtained a large scope of data describing various atmospheric parameters: cloud cover, major wind components, basic levels of isobaric surfaces, and precipitation rate. Based on this data, we show both distinction in precipitation formation due to various heights and its differentiation of the ice particles. The relation between particle rise in the atmosphere and its size is analyzed: at 8-10 km altitude large ice particles, resulted from coagulation, dominate, while at 6-7 km altitude one can find snow and small ice particles formed by condensation growth. Also, mechanical trajectories of solid precipitation particles for various ice formation processes have been calculated.

Precise interpolar phasing of abrupt climate change during the last ice age.

PubMed

2015-04-30

The last glacial period exhibited abrupt Dansgaard-Oeschger climatic oscillations, evidence of which is preserved in a variety of Northern Hemisphere palaeoclimate archives. Ice cores show that Antarctica cooled during the warm phases of the Greenland Dansgaard-Oeschger cycle and vice versa, suggesting an interhemispheric redistribution of heat through a mechanism called the bipolar seesaw. Variations in the Atlantic meridional overturning circulation (AMOC) strength are thought to have been important, but much uncertainty remains regarding the dynamics and trigger of these abrupt events. Key information is contained in the relative phasing of hemispheric climate variations, yet the large, poorly constrained difference between gas age and ice age and the relatively low resolution of methane records from Antarctic ice cores have so far precluded methane-based synchronization at the required sub-centennial precision. Here we use a recently drilled high-accumulation Antarctic ice core to show that, on average, abrupt Greenland warming leads the corresponding Antarctic cooling onset by 218 ± 92 years (2σ) for Dansgaard-Oeschger events, including the Bølling event; Greenland cooling leads the corresponding onset of Antarctic warming by 208 ± 96 years. Our results demonstrate a north-to-south directionality of the abrupt climatic signal, which is propagated to the Southern Hemisphere high latitudes by oceanic rather than atmospheric processes. The similar interpolar phasing of warming and cooling transitions suggests that the transfer time of the climatic signal is independent of the AMOC background state. Our findings confirm a central role for ocean circulation in the bipolar seesaw and provide clear criteria for assessing hypotheses and model simulations of Dansgaard-Oeschger dynamics.

Heating- and pressure-induced transformations in amorphous and hexagonal ice: A computer simulation study using the TIP4P/2005 model

NASA Astrophysics Data System (ADS)

Engstler, Justin; Giovambattista, Nicolas

2017-08-01

We characterize the phase behavior of glassy water by performing extensive out-of-equilibrium molecular dynamics simulations using the TIP4P/2005 water model. Specifically, we study (i) the pressure-induced transformations between low-density (LDA) and high-density amorphous ice (HDA), (ii) the pressure-induced amorphization (PIA) of hexagonal ice (Ih), (iii) the heating-induced LDA-to-HDA transformation at high pressures, (iv) the heating-induced HDA-to-LDA transformation at low and negative pressures, (v) the glass transition temperatures of LDA and HDA as a function of pressure, and (vi) the limit of stability of LDA upon isobaric heating and isothermal decompression (at negative pressures). These transformations are studied systematically, over a wide range of temperatures and pressures, allowing us to construct a P-T phase diagram for glassy TIP4P/2005 water. Our results are in qualitative agreement with experimental observations and with the P-T phase diagram obtained for glassy ST2 water that exhibits a liquid-liquid phase transition and critical point. We also discuss the mechanism for PIA of ice Ih and show that this is a two-step process where first, the hydrogen-bond network (HBN) is distorted and then the HBN abruptly collapses. Remarkably, the collapse of the HB in ice Ih occurs when the average molecular orientations order, a measure of the tetrahedrality of the HBN, is of the same order as in LDA, suggesting a common mechanism for the LDA-to-HDA and Ih-to-HDA transformations.

Heating- and pressure-induced transformations in amorphous and hexagonal ice: A computer simulation study using the TIP4P/2005 model.

PubMed

Engstler, Justin; Giovambattista, Nicolas

2017-08-21

We characterize the phase behavior of glassy water by performing extensive out-of-equilibrium molecular dynamics simulations using the TIP4P/2005 water model. Specifically, we study (i) the pressure-induced transformations between low-density (LDA) and high-density amorphous ice (HDA), (ii) the pressure-induced amorphization (PIA) of hexagonal ice (I h ), (iii) the heating-induced LDA-to-HDA transformation at high pressures, (iv) the heating-induced HDA-to-LDA transformation at low and negative pressures, (v) the glass transition temperatures of LDA and HDA as a function of pressure, and (vi) the limit of stability of LDA upon isobaric heating and isothermal decompression (at negative pressures). These transformations are studied systematically, over a wide range of temperatures and pressures, allowing us to construct a P-T phase diagram for glassy TIP4P/2005 water. Our results are in qualitative agreement with experimental observations and with the P-T phase diagram obtained for glassy ST2 water that exhibits a liquid-liquid phase transition and critical point. We also discuss the mechanism for PIA of ice I h and show that this is a two-step process where first, the hydrogen-bond network (HBN) is distorted and then the HBN abruptly collapses. Remarkably, the collapse of the HB in ice I h occurs when the average molecular orientations order, a measure of the tetrahedrality of the HBN, is of the same order as in LDA, suggesting a common mechanism for the LDA-to-HDA and I h -to-HDA transformations.

Minimalist model of ice microphysics in mixed-phase stratiform clouds

NASA Astrophysics Data System (ADS)

Yang, Fan; Ovchinnikov, Mikhail; Shaw, Raymond A.

2013-07-01

The question of whether persistent ice crystal precipitation from supercooled layer clouds can be explained by time-dependent, stochastic ice nucleation is explored using an approximate, analytical model and a large-eddy simulation (LES) cloud model. The updraft velocity in the cloud defines an accumulation zone, where small ice particles cannot fall out until they are large enough, which will increase the residence time of ice particles in the cloud. Ice particles reach a quasi-steady state between growth by vapor deposition and fall speed at cloud base. The analytical model predicts that ice water content (wi) has a 2.5 power-law relationship with ice number concentration (ni). wi and ni from a LES cloud model with stochastic ice nucleation confirm the 2.5 power-law relationship, and initial indications of the scaling law are observed in data from the Indirect and Semi-Direct Aerosol Campaign. The prefactor of the power law is proportional to the ice nucleation rate and therefore provides a quantitative link to observations of ice microphysical properties.

Minimalist Model of Ice Microphysics in Mixed-phase Stratiform Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, F.; Ovchinnikov, Mikhail; Shaw, Raymond A.

The question of whether persistent ice crystal precipitation from super cooled layer clouds can be explained by time-dependent, stochastic ice nucleation is explored using an approximate, analytical model, and a large-eddy simulation (LES) cloud model. The updraft velocity in the cloud defines an accumulation zone, where small ice particles cannot fall out until they are large enough, which will increase the residence time of ice particles in the cloud. Ice particles reach a quasi-steady state between growth by vapor deposition and fall speed at cloud base. The analytical model predicts that ice water content (wi) has a 2.5 power lawmore » relationship with ice number concentration ni. wi and ni from a LES cloud model with stochastic ice nucleation also confirm the 2.5 power law relationship. The prefactor of the power law is proportional to the ice nucleation rate, and therefore provides a quantitative link to observations of ice microphysical properties.« less

Remote Sensing of Liquid Water and Ice Cloud Optical Thickness and Effective Radius in the Arctic: Application of Airborne Multispectral MAS Data

NASA Technical Reports Server (NTRS)

King, Michael D.; Platnick, Steven; Yang, Ping; Arnold, G. Thomas; Gray, Mark A.; Riedi, Jerome C.; Ackerman, Steven A.; Liou, Kuo-Nan

2003-01-01

A multispectral scanning spectrometer was used to obtain measurements of the reflection function and brightness temperature of clouds, sea ice, snow, and tundra surfaces at 50 discrete wavelengths between 0.47 and 14.0 microns. These observations were obtained from the NASA ER-2 aircraft as part of the FIRE Arctic Clouds Experiment, conducted over a 1600 x 500 km region of the north slope of Alaska and surrounding Beaufort and Chukchi Seas between 18 May and 6 June 1998. Multispectral images of the reflection function and brightness temperature in 11 distinct bands of the MODIS Airborne Simulator (MAS) were used to derive a confidence in clear sky (or alternatively the probability of cloud), shadow, and heavy aerosol over five different ecosystems. Based on the results of individual tests run as part of the cloud mask, an algorithm was developed to estimate the phase of the clouds (water, ice, or undetermined phase). Finally, the cloud optical thickness and effective radius were derived for both water and ice clouds that were detected during one flight line on 4 June. This analysis shows that the cloud mask developed for operational use on MODIS, and tested using MAS data in Alaska, is quite capable of distinguishing clouds from bright sea ice surfaces during daytime conditions in the high Arctic. Results of individual tests, however, make it difficult to distinguish ice clouds over snow and sea ice surfaces, so additional tests were added to enhance the confidence in the thermodynamic phase of clouds over the Beaufort Sea. The cloud optical thickness and effective radius retrievals used 3 distinct bands of the MAS, with the newly developed 1.62 and 2.13 micron bands being used quite successfully over snow and sea ice surfaces. These results are contrasted with a MODIS-based algorithm that relies on spectral reflectance at 0.87 and 2.13 micron.

A Novel Ice Storm Experiment for Evaluating the Ecological Impacts of These Extreme Weather Events

NASA Astrophysics Data System (ADS)

Driscoll, C. T.; Campbell, J. L.; Rustad, L.; Fahey, T.; Fahey, R. T.; Garlick, S.; Groffman, P.; Hawley, G. J.; Schaberg, P. G.

2017-12-01

Ice storms are among the most destructive natural disturbances in some regions of the world, and are an example of an extreme weather event that can profoundly disrupt ecosystem function. Despite potential dire consequences of ice storms on ecosystems and society, we are poorly positioned to predict responses because severe ice storms are infrequent and understudied. Since it is difficult to determine when and where ice storms will occur, most previous research has consisted of ad hoc attempts to characterize impacts in the wake of major icing events. To evaluate ice storm effects in a more controlled manner, we conducted a novel ice storm manipulation experiment at the Hubbard Brook Experimental Forest in New Hampshire. Water was sprayed above the forest canopy in sub-freezing conditions to simulate a glaze ice event. Treatments included replicate plots that received three levels of radial ice thickness (6, 13, and 19 mm) and reference plots that were not sprayed. Additionally, two of the mid-level treatment plots received ice applications in back-to-back years to evaluate effects associated with ice storm frequency. Measures of the forest canopy, including hemispherical photography, photosynthetically active radiation, and ground-based LiDAR, indicated that the ice loads clearly damaged vegetation and opened up the canopy, allowing more light to penetrate. These changes in the canopy were reflected in measurements of fine and coarse woody debris that were commensurate with the level of icing. Soil respiration declined in the most heavily damaged plots, which we attribute to changes in root activity. Although soil solution nitrogen showed clear seasonal patterns, there was no treatment response. These results differ from the severe regional natural ice storm of 1998, which caused large leaching losses of nitrate in soil solutions and stream water during the growing season after the event, due to lack of uptake by damaged vegetation. It is not yet clear why there is a discrepancy between the results from our experiment and the natural ice storm, even though the levels of damage were comparable. It is possible that large declines in N supply observed over the last two decades have resulted in a tightening of the nitrogen cycle. Quantification of additional pools and fluxes (especially foliar N) should provide further insight.

New porous water ice metastable at atmospheric pressure obtained by emptying a hydrogen-filled ice

PubMed Central

del Rosso, Leonardo; Celli, Milva; Ulivi, Lorenzo

2016-01-01

The properties of some forms of water ice reserve still intriguing surprises. Besides the several stable or metastable phases of pure ice, solid mixtures of water with gases are precursors of other ices, as in some cases they may be emptied, leaving a metastable hydrogen-bound water structure. We present here the first characterization of a new form of ice, obtained from the crystalline solid compound of water and molecular hydrogen called C0-structure filled ice. By means of Raman spectroscopy, we measure the hydrogen release at different temperatures and succeed in rapidly removing all the hydrogen molecules, obtaining a new form of ice (ice XVII). Its structure is determined by means of neutron diffraction measurements. Of paramount interest is that the emptied crystal can adsorb again hydrogen and release it repeatedly, showing a temperature-dependent hysteresis. PMID:27819265

Regular network model for the sea ice-albedo feedback in the Arctic.

PubMed

Müller-Stoffels, Marc; Wackerbauer, Renate

2011-03-01

The Arctic Ocean and sea ice form a feedback system that plays an important role in the global climate. The complexity of highly parameterized global circulation (climate) models makes it very difficult to assess feedback processes in climate without the concurrent use of simple models where the physics is understood. We introduce a two-dimensional energy-based regular network model to investigate feedback processes in an Arctic ice-ocean layer. The model includes the nonlinear aspect of the ice-water phase transition, a nonlinear diffusive energy transport within a heterogeneous ice-ocean lattice, and spatiotemporal atmospheric and oceanic forcing at the surfaces. First results for a horizontally homogeneous ice-ocean layer show bistability and related hysteresis between perennial ice and perennial open water for varying atmospheric heat influx. Seasonal ice cover exists as a transient phenomenon. We also find that ocean heat fluxes are more efficient than atmospheric heat fluxes to melt Arctic sea ice.

Cryobot: an ice penetrating robotic vehicle for Mars and Europa

NASA Technical Reports Server (NTRS)

Zimmerman, W. F.; Bonitz, R.; Feldman, J.

2001-01-01

This paper describes the science driven requirements for a robotic vehicle, which utilizes gravity, and both passive and active heating systems to drive ice to a liquid phase change state, in order to facilitate mobility.

Aerosol partitioning between the interstitial and the condensed phase in mixed-phase clouds

NASA Astrophysics Data System (ADS)

Verheggen, Bart; Cozic, Julie; Weingartner, Ernest; Bower, Keith; Mertes, Stephan; Connolly, Paul; Gallagher, Martin; Flynn, Michael; Choularton, Tom; Baltensperger, Urs

2007-12-01

The partitioning of aerosol particles between the cloud and the interstitial phase (i.e., unactivated aerosol) has been investigated during several Cloud and Aerosol Characterization Experiments (CLACE-3, CLACE-3? and CLACE-4) conducted in winter and summer 2004 and winter 2005 at the high alpine research station Jungfraujoch (3580 m altitude, Switzerland). Ambient air was sampled using different inlets in order to determine the activated fraction of aerosol particles, FN, defined as the fraction of the total aerosol number concentration (with particle diameter dp > 100 nm) that has been incorporated into cloud particles. The liquid and ice water content of mixed-phase clouds were characterized by analyzing multiple cloud probes. The dependence of the activated fraction on several environmental factors is discussed on the basis of more than 900 h of in-cloud observations and parameterizations for key variables are given. FN is found to increase with increasing liquid water content and to decrease with increasing particle number concentration in liquid clouds. FN also decreases with increasing cloud ice mass fraction and with decreasing temperature from 0 to -25°C. The Wegener-Bergeron-Findeisen process probably contributed to this trend, since the presence of ice crystals causes liquid droplets to evaporate, thus releasing the formerly activated particles back into the interstitial phase. Ice nucleation could also have prevented additional cloud condensation nuclei from activating. The observed activation behavior has significant implications for our understanding of the indirect effect of aerosols on climate.

Ice Pack Heat Sink Subsystem - Phase I. [astronaut liquid cooling garment design and testing

NASA Technical Reports Server (NTRS)

Roebelen, G. J., Jr.

1973-01-01

This paper describes the design and test at one-g of a functional laboratory model (non-flight) Ice Pack Heat Sink Subsystem to be used eventually for astronaut cooling during manned space missions. In normal use, excess heat in the liquid cooling garment (LCG) coolant is transferred to a reusable/regenerable ice pack heat sink. For emergency operation, or for extension of extravehicular activity mission time after all the ice has melted, water from the ice pack is boiled to vacuum, thereby continuing to remove heat from the LCG coolant. This subsystem incorporates a quick connect/disconnect thermal interface between the ice pack heat sink and the subsystem heat exchanger.

Ice pack heat sink subsystem - Phase 1, Volume 1

NASA Technical Reports Server (NTRS)

Roebelen, G. J., Jr.

1973-01-01

The design, development, fabrication, and test at one-g of a functional laboratory model (non-flight) ice pack heat sink subsystem to be used eventually for astronaut cooling during manned space missions are discussed. In normal use, excess heat in the liquid cooling garment (LCG) coolant is transferred to a reusable/regenerable ice pack heat sink. For emergency operation, or for extension of extravehicular activity mission time after all the ice has melted, water from the ice pack is boiled to vacuum, thereby continuing to remove heat from the LCG coolant. This subsystem incorporates a quick connect/disconnect thermal interface between the ice pack heat sink and the subsystem heat exchanger.

Graphical Representations and Cluster Algorithms for Ice Rule Vertex Models.

NASA Astrophysics Data System (ADS)

Shtengel, Kirill; Chayes, L.

2002-03-01

We introduce a new class of polymer models which is closely related to loop models, recently a topic of intensive studies. These particular models arise as graphical representations for ice-rule vertex models. The associated cluster algorithms provide a unification and generalisation of most of the existing algorithms. For many lattices, percolation in the polymer models evidently indicates first order phase transitions in the vertex models. Critical phases can be understood as being susceptible to colour symmetry breaking in the polymer models. The analysis includes, but is certainly not limited to the square lattice six-vertex model. In particular, analytic criteria can be found for low temperature phases in other even coordinated 2D lattices such as the triangular lattice, or higher dimensional lattices such as the hyper-cubic lattices of arbitrary dimensionality. Finally, our approach can be generalised to the vertex models that do not obey the ice rule, such as the eight-vertex model.

Eutectic phase in water-ice: a self-assembled environment conducive to metal-catalyzed non-enzymatic RNA polymerization.

PubMed

Monnard, Pierre-Alain; Ziock, Hans

2008-08-01

Information and catalytic polymers play an essential role in contemporary cellular life, and their emergence must have been crucial during the complex processes that led to the assembly of the first living systems. Polymerization reactions producing these molecules would have had to occur in aqueous medium, which is known to disfavor such reactions. Thus, it was proposed early on that these polymerizations had to be supported by particular environments, such as mineral surfaces and eutectic phases in water-ice, which would have led to the concentration of the monomers out of the bulk aqueous medium and their condensation. This review presents the work conducted to understand how the eutectic phases in water-ice might have promoted RNA polymerization, thereby presumably contributing to the emergence of the ancient information and catalytic system envisioned by the 'RNA-World' hypothesis.

Polar winter cloud depolarization measurements with the CANDAC Rayleigh-Mie-Raman Lidar

NASA Astrophysics Data System (ADS)

McCullough, E. M.; Nott, G. J.; Duck, T. J.; Sica, R. J.; Doyle, J. G.; Pike-thackray, C.; Drummond, J. R.

2011-12-01

Clouds introduce a significant positive forcing to the Arctic radiation budget and this is strongest during the polar winter when shortwave radiation is absent (Intrieri et al., 2002). The amount of forcing depends on the occurrence probability and optical depth of the clouds as well as the cloud particle phase (Ebert and Curry 1992). Mixed-phase clouds are particularly complex as they involve interactions between three phases of water (vapour, liquid and ice) coexisting in the same cloud. Although significant progress has been made in characterizing wintertime Arctic clouds (de Boer et al., 2009 and 2011), there is considerable variability in the relative abundance of particles of each phase, in the morphology of solid particles, and in precipitation rates depending on the meteorology at the time. The Canadian Network for the Detection of Atmospheric Change (CANDAC) Rayleigh-Mie-Raman Lidar (CRL) was installed in the Canadian High Arctic at Eureka, Nunavut (80°N, 86°W) in 2008-2009. The remotely-operated system began with measurement capabilities for multi-wavelength aerosol extinction, water vapour mixing ratio, and tropospheric temperature profiles, as well as backscatter cross section coefficient and colour ratio. In 2010, a new depolarization channel was added. The capability to measure the polarization state of the return signal allows the characterization of the cloud in terms of liquid and ice water content, enabling the lidar to probe all three phases of water in these clouds. Lidar depolarization results from 2010 and 2011 winter clouds at Eureka will be presented, with a focus on differences in downwelling radiation between mixed phase clouds and ice clouds. de Boer, G., E.W. Eloranta, and M.D. Shupe (2009), Arctic mixed-phase stratiform cloud properties from multiple years of surface-based measurements at two high-latitude locations, Journal of Atmospheric Sciences, 66 (9), 2874-2887. de Boer, G., H. Morrison, M. D. Shupe, and R. Hildner (2011), Evidence of liquid dependent ice nucleation in high-latitude stratiform clouds from surface remote sensors, Geophysical Research Letters, 38, L01803. Ebert, EE and J.A .Curry (1992), A parameterization of ice cloud optical properties for climate models, Journal of Geophysical Research 97:3831-3836. Intrieri JM, Fairall CW, Shupe MD, Persson POG, Andreas EL, Guest PS, Moritz RE. 2002. An annual cycle of Arctic surface cloud forcing at SHEBA. Journal of Geophysical Research 107 NO. C10, 8039 . Noel, V., H. Chepfer, M. Haeffelin, and Y. Morille (2006), Classification of ice crystal shapes in midlatitude ice clouds from three years of lidar observations over the SIRTA observatory. Journal of the Atmospheric Sciences, 63:2978 - 2991.

Soft-sediment deformation structures from an ice-marginal storm-tide interactive system, Permo-Carboniferous Talchir Formation, Talchir Coalbasin, India

NASA Astrophysics Data System (ADS)

Bhattacharya, H. N.; Bhattacharya, Biplab

2010-01-01

Permo-Carboniferous Talchir Formation, Talchir Coalbasin, India, records sedimentation during a phase of climatic amelioration in an ice-marginal storm-affected shelf. Evidences of subtidal processes are preserved only under thick mud drapes deposited during waning storm phases. Various soft-sediment deformation structures in some sandstone/siltstone-mudstone interbeds, like syn-sedimentary faults, deformed laminations, sand-silt flows, convolute laminations and various flame structures, suggest liquefaction and fluidization of the beds due to passage of syn-depositional seismic shocks. In the Late Paleozoic ice-marginal shelf, such earthquake tremors could be generated by crustal movements in response to glacioisostatic adjustments of the basin floor.

Study of mixed phase clouds over west Africa: Ice-crystal corner reflection effects observed with a two-wavelength polarization lidar

NASA Astrophysics Data System (ADS)

Veselovskii, Igor; Goloub, Philippe; Podvin, Thierry; Tanre, Didier; Ansmann, Albert; Korenskiy, Michail; Borovoi, Anatoli; Hu, Qiaoyun; Bovchaliuk, Valentin; Whiteman, David N.

2018-04-01

Lidar sounding is used for the analysis of possible contribution of the corner reflection (CR) effect to the total backscattering in case of ice crystals. Our study is based on observations of mixed phase clouds performed during the SHADOW campaign in Senegal. Mie-Raman lidar allows measurements at 355 nm and 532 nm at 43 dg. off-zenith angle, so the extinction and backscattering Ångström exponents can be evaluated. In some measurements we observed the positive values of backscattering Ångström exponent, which can be attributed to the corner reflection by horizontally oriented ice plates.

The Ice Line in Pre-Solar Protoplanetary Disks

NASA Technical Reports Server (NTRS)

Davis, Sanford S.

2012-01-01

Protoplanetary disks contain abundant quantities of water molecules in both gas and solid phases. The distribution of these two phases in an evolving protoplanetary disk will have important consequences regarding water sequestration in planetary embryos. The boundary between gaseous and solid water is the "ice line" or "snow line" A simplified model that captures the complicated two-branched structure of the ice line is developed and compared with recent investigations. The effect of an evolving Sun is also included for the first time. This latter parameter could have important consequences regarding the thermodynamic state and the surface reaction environment for the time-dependent chemical reactions occurring during the 1- to 10-million-year lifetime of the pre-solar disk.

Ice-flow reorganization in West Antarctica 2.5 kyr ago dated using radar-derived englacial flow velocities

NASA Astrophysics Data System (ADS)

Kingslake, Jonathan; Martín, Carlos; Arthern, Robert J.; Corr, Hugh F. J.; King, Edward C.

2016-09-01

We date a recent ice-flow reorganization of an ice divide in the Weddell Sea Sector, West Antarctica, using a novel combination of inverse methods and ice-penetrating radars. We invert for two-dimensional ice flow within an ice divide from data collected with a phase-sensitive ice-penetrating radar while accounting for the effect of firn on radar propagation and ice flow. By comparing isochronal layers simulated using radar-derived flow velocities with internal layers observed with an impulse radar, we show that the divide's internal structure is not in a steady state but underwent a disturbance, potentially implying a regional ice-flow reorganization, 2.5 (1.8-2.9) kyr B.P. Our data are consistent with slow ice flow in this location before the reorganization and the ice divide subsequently remaining stationary. These findings increase our knowledge of the glacial history of a region that lacks dated constraints on late-Holocene ice-sheet retreat and provides a key target for models that reconstruct and predict ice-sheet behavior.

Global Simulations of Ice nucleation and Ice Supersaturation with an Improved Cloud Scheme in the Community Atmosphere Model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gettelman, A.; Liu, Xiaohong; Ghan, Steven J.

2010-09-28

A process-based treatment of ice supersaturation and ice-nucleation is implemented in the National Center for Atmospheric Research (NCAR) Community Atmosphere Model (CAM). The new scheme is designed to allow (1) supersaturation with respect to ice, (2) ice nucleation by aerosol particles and (3) ice cloud cover consistent with ice microphysics. The scheme is implemented with a 4-class 2 moment microphysics code and is used to evaluate ice cloud nucleation mechanisms and supersaturation in CAM. The new model is able to reproduce field observations of ice mass and mixed phase cloud occurrence better than previous versions of the model. Simulations indicatemore » heterogeneous freezing and contact nucleation on dust are both potentially important over remote areas of the Arctic. Cloud forcing and hence climate is sensitive to different formulations of the ice microphysics. Arctic radiative fluxes are sensitive to the parameterization of ice clouds. These results indicate that ice clouds are potentially an important part of understanding cloud forcing and potential cloud feedbacks, particularly in the Arctic.« less

Determination of Shed Ice Particle Size Using High Speed Digital Imaging

NASA Technical Reports Server (NTRS)

Broughton, Howard; Owens, Jay; Sims, James J.; Bond, Thomas H.

1996-01-01

A full scale model of an aircraft engine inlet was tested at NASA Lewis Research Center's Icing Research Tunnel. Simulated natural ice sheds from the engine inlet lip were studied using high speed digital image acquisition and image analysis. Strategic camera placement integrated at the model design phase allowed the study of ice accretion on the inlet lip and the resulting shed ice particles at the aerodynamic interface plane at the rear of the inlet prior to engine ingestion. The resulting digital images were analyzed using commercial and proprietary software to determine the size of the ice particles that could potentially be ingested by the engine during a natural shedding event. A methodology was developed to calibrate the imaging system and insure consistent and accurate measurements of the ice particles for a wide range of icing conditions.

Genome-Wide Analysis of the Arabidopsis Replication Timing Program1[OPEN

PubMed Central

Brooks, Ashley M.; Wheeler, Emily; LeBlanc, Chantal; Lee, Tae-Jin; Martienssen, Robert A.; Thompson, William F.

2018-01-01

Eukaryotes use a temporally regulated process, known as the replication timing program, to ensure that their genomes are fully and accurately duplicated during S phase. Replication timing programs are predictive of genomic features and activity and are considered to be functional readouts of chromatin organization. Although replication timing programs have been described for yeast and animal systems, much less is known about the temporal regulation of plant DNA replication or its relationship to genome sequence and chromatin structure. We used the thymidine analog, 5-ethynyl-2′-deoxyuridine, in combination with flow sorting and Repli-Seq to describe, at high-resolution, the genome-wide replication timing program for Arabidopsis (Arabidopsis thaliana) Col-0 suspension cells. We identified genomic regions that replicate predominantly during early, mid, and late S phase, and correlated these regions with genomic features and with data for chromatin state, accessibility, and long-distance interaction. Arabidopsis chromosome arms tend to replicate early while pericentromeric regions replicate late. Early and mid-replicating regions are gene-rich and predominantly euchromatic, while late regions are rich in transposable elements and primarily heterochromatic. However, the distribution of chromatin states across the different times is complex, with each replication time corresponding to a mixture of states. Early and mid-replicating sequences interact with each other and not with late sequences, but early regions are more accessible than mid regions. The replication timing program in Arabidopsis reflects a bipartite genomic organization with early/mid-replicating regions and late regions forming separate, noninteracting compartments. The temporal order of DNA replication within the early/mid compartment may be modulated largely by chromatin accessibility. PMID:29301956

Selective Entrapment of Extrachromosomally Amplified DNA by Nuclear Budding and Micronucleation during S Phase

PubMed Central

Shimizu, Noriaki; Itoh, Nobuo; Utiyama, Hiroyasu; Wahl, Geoffrey M.

1998-01-01

Acentric, autonomously replicating extrachromosomal structures called double-minute chromosomes (DMs) frequently mediate oncogene amplification in human tumors. We show that DMs can be removed from the nucleus by a novel micronucleation mechanism that is initiated by budding of the nuclear membrane during S phase. DMs containing c-myc oncogenes in a colon cancer cell line localized to and replicated at the nuclear periphery. Replication inhibitors increased micronucleation; cell synchronization and bromodeoxyuridine–pulse labeling demonstrated de novo formation of buds and micronuclei during S phase. The frequencies of S-phase nuclear budding and micronucleation were increased dramatically in normal human cells by inactivating p53, suggesting that an S-phase function of p53 minimizes the probability of producing the broken chromosome fragments that induce budding and micronucleation. These data have implications for understanding the behavior of acentric DNA in interphase nuclei and for developing chemotherapeutic strategies based on this new mechanism for DM elimination. PMID:9508765

How MCM loading and spreading specify eukaryotic DNA replication initiation sites.

PubMed

Hyrien, Olivier

2016-01-01

DNA replication origins strikingly differ between eukaryotic species and cell types. Origins are localized and can be highly efficient in budding yeast, are randomly located in early fly and frog embryos, which do not transcribe their genomes, and are clustered in broad (10-100 kb) non-transcribed zones, frequently abutting transcribed genes, in mammalian cells. Nonetheless, in all cases, origins are established during the G1-phase of the cell cycle by the loading of double hexamers of the Mcm 2-7 proteins (MCM DHs), the core of the replicative helicase. MCM DH activation in S-phase leads to origin unwinding, polymerase recruitment, and initiation of bidirectional DNA synthesis. Although MCM DHs are initially loaded at sites defined by the binding of the origin recognition complex (ORC), they ultimately bind chromatin in much greater numbers than ORC and only a fraction are activated in any one S-phase. Data suggest that the multiplicity and functional redundancy of MCM DHs provide robustness to the replication process and affect replication time and that MCM DHs can slide along the DNA and spread over large distances around the ORC. Recent studies further show that MCM DHs are displaced along the DNA by collision with transcription complexes but remain functional for initiation after displacement. Therefore, eukaryotic DNA replication relies on intrinsically mobile and flexible origins, a strategy fundamentally different from bacteria but conserved from yeast to human. These properties of MCM DHs likely contribute to the establishment of broad, intergenic replication initiation zones in higher eukaryotes.

Tipin functions in the protection against topoisomerase I inhibitor.

PubMed

Hosono, Yoshifumi; Abe, Takuya; Higuchi, Masato; Kajii, Kosa; Sakuraba, Shuichi; Tada, Shusuke; Enomoto, Takemi; Seki, Masayuki

2014-04-18

The replication fork temporarily stalls when encountering an obstacle on the DNA, and replication resumes after the barrier is removed. Simultaneously, activation of the replication checkpoint delays the progression of S phase and inhibits late origin firing. Camptothecin (CPT), a topoisomerase I (Top1) inhibitor, acts as a DNA replication barrier by inducing the covalent retention of Top1 on DNA. The Timeless-Tipin complex, a component of the replication fork machinery, plays a role in replication checkpoint activation and stabilization of the replication fork. However, the role of the Timeless-Tipin complex in overcoming the CPT-induced replication block remains elusive. Here, we generated viable TIPIN gene knock-out (KO) DT40 cells showing delayed S phase progression and increased cell death. TIPIN KO cells were hypersensitive to CPT. However, homologous recombination and replication checkpoint were activated normally, whereas DNA synthesis activity was markedly decreased in CPT-treated TIPIN KO cells. Proteasome-dependent degradation of chromatin-bound Top1 was induced in TIPIN KO cells upon CPT treatment, and pretreatment with aphidicolin, a DNA polymerase inhibitor, suppressed both CPT sensitivity and Top1 degradation. Taken together, our data indicate that replication forks formed without Tipin may collide at a high rate with Top1 retained on DNA by CPT treatment, leading to CPT hypersensitivity and Top1 degradation in TIPIN KO cells.

NHEXAS PHASE I MARYLAND STUDY--QA ANALYTICAL RESULTS FOR PESTICIDES IN REPLICATE SAMPLES

EPA Science Inventory

The Pesticides in Replicates data set contains the analytical results of measurements of up to 10 pesticides in 68 replicate (duplicate) samples from 41 households. Measurements were made in samples of indoor air, dust, soil, drinking water, food, and beverages. Duplicate sampl...

Ice Chemistry in Starless Molecular Cores

NASA Astrophysics Data System (ADS)

Kalvāns, J.

2015-06-01

Starless molecular cores are natural laboratories for interstellar molecular chemistry research. The chemistry of ices in such objects was investigated with a three-phase (gas, surface, and mantle) model. We considered the center part of five starless cores, with their physical conditions derived from observations. The ice chemistry of oxygen, nitrogen, sulfur, and complex organic molecules (COMs) was analyzed. We found that an ice-depth dimension, measured, e.g., in monolayers, is essential for modeling of chemistry in interstellar ices. Particularly, the H2O:CO:CO2:N2:NH3 ice abundance ratio regulates the production and destruction of minor species. It is suggested that photodesorption during the core-collapse period is responsible for the high abundance of interstellar H2O2 and O2H and other species synthesized on the surface. The calculated abundances of COMs in ice were compared to observed gas-phase values. Smaller activation barriers for CO and H2CO hydrogenation may help explain the production of a number of COMs. The observed abundance of methyl formate HCOOCH3 could be reproduced with a 1 kyr, 20 K temperature spike. Possible desorption mechanisms, relevant for COMs, are gas turbulence (ice exposure to interstellar photons) or a weak shock within the cloud core (grain collisions). To reproduce the observed COM abundances with the present 0D model, 1%-10% of ice mass needs to be sublimated. We estimate that the lifetime for starless cores likely does not exceed 1 Myr. Taurus cores are likely to be younger than their counterparts in most other clouds.

Channel-Like Bottom Features and High Bottom Melt Rates of Petermann Gletscher's Floating Tongue in Northwestern Greenland

NASA Astrophysics Data System (ADS)

Steffen, K.; Huff, R. D.; Cullen, N.; Rignot, E.; Stewart, C.; Jenkins, A.

2003-12-01

Petermann Gletscher is the largest and most influential outlet glacier in central northern Greenland. Located at 81 N, 60 W, it drains an area of 71,580 km2, with a discharge of 12 cubic km of ice per year into the Arctic Ocean. We finished a second field season in spring 2003 collecting in situ data on local climate, ice velocity, strain rates, ice thickness profiles and bottom melt rates of the floating ice tongue. Last years findings have been confirmed that large channels of several hundred meters in depth at the underside of the floating ice tongue are running roughly parallel to the flow direction. We mapped these channels using ground penetrating radar at 25 MHz frequency and multi-phase radar in profiling mode over half of the glacier's width. In addition, NASA airborne laser altimeter data was collected along and cross-glacier for accurate assessment of surface topography. We will present a 3-D model of the floating ice tongue and provide hypothesis of the origin and mechanism that caused these large ice channels at the bottom of the floating ice tongue. Multi-phase radar point measurements revealed interesting results of bottom melt rates, which exceed all previous estimates. It is worth mentioned that the largest bottom melt rates were not found at the grounding line, which is common on ice shelves in the Antarctica. In addition, GPS tidal motion has been measured over one lunar cycle at the flex zone and on the free floating ice tongue and the result will be compared to historic measurements made at the beginning of last century. The surface climate has been recorded by two automatic weather stations over a 12 month period, and the local climate of this remote region will be presented.

Latent heat induced rotation limited aggregation in 2D ice nanocrystals.

PubMed

Bampoulis, Pantelis; Siekman, Martin H; Kooij, E Stefan; Lohse, Detlef; Zandvliet, Harold J W; Poelsema, Bene

2015-07-21

The basic science responsible for the fascinating shapes of ice crystals and snowflakes is still not understood. Insufficient knowledge of the interaction potentials and the lack of relevant experimental access to the growth process are to blame for this failure. Here, we study the growth of fractal nanostructures in a two-dimensional (2D) system, intercalated between mica and graphene. Based on our scanning tunneling spectroscopy data, we provide compelling evidence that these fractals are 2D ice. They grow while they are in material contact with the atmosphere at 20 °C and without significant thermal contact to the ambient. The growth is studied in situ, in real time and space at the nanoscale. We find that the growing 2D ice nanocrystals assume a fractal shape, which is conventionally attributed to Diffusion Limited Aggregation (DLA). However, DLA requires a low mass density mother phase, in contrast to the actual currently present high mass density mother phase. Latent heat effects and consequent transport of heat and molecules are found to be key ingredients for understanding the evolution of the snow (ice) flakes. We conclude that not the local availability of water molecules (DLA), but rather them having the locally required orientation is the key factor for incorporation into the 2D ice nanocrystal. In combination with the transport of latent heat, we attribute the evolution of fractal 2D ice nanocrystals to local temperature dependent rotation limited aggregation. The ice growth occurs under extreme supersaturation, i.e., the conditions closely resemble the natural ones for the growth of complex 2D snow (ice) flakes and we consider our findings crucial for solving the "perennial" snow (ice) flake enigma.

On the evolution and activity of cometary nuclei.

PubMed

Prialnik, D; Bar-Nun, A

1987-02-15

The thermal evolution of a spherical cometary nucleus (initial radius of 2.5 km), composed initially of very cold amorphous ice and moving in comet Halley's orbit, is simulated numerically for 280 revolutions. It is found that the phase transition from amorphous to crystalline ice constitutes a major internal heat source. The transition does not occur continuously, but in five distinct rounds, during the following revolutions: 1, 7, 40-41, 110-112, and 248-252. Due to the (slow) heating of the amorphous ice between crystallization rounds, the phase transition front advances into the nucleus to progressively greater depths: 36 m on the first round, and then 91 m, 193 m, 381 m, and 605 m respectively. Each round of crystallization starts when when the boundary between amorphous and crystalline ice is brought to approximately 15 m below the surface, as the nucleus radius decreases due to sublimation. At the time of crystallization, the temperature of the transformed ice rises to 180 K. According to experimental studies of gas-laden amorphous ice, a large fraction of the gas trapped in the ice at low temperatures is released. Whereas some of the released gas may find its way out through cracks in the crystalline ice layer, the rest is expected to accumulate in gas pockets that may eventually explode, forming "volcanic calderas." The gas-laden amorphous ice thus exposed may be a major source of gas and dust jets into the coma, such as those observed on comet Halley by the Giotto spacecraft. The activity of new comets and, possibly, cometary outbursts and splits may also be explained in terms of explosive gas release following the transition from amorphous to crystalline ice.

Latent heat induced rotation limited aggregation in 2D ice nanocrystals

NASA Astrophysics Data System (ADS)

Bampoulis, Pantelis; Siekman, Martin H.; Kooij, E. Stefan; Lohse, Detlef; Zandvliet, Harold J. W.; Poelsema, Bene

2015-07-01

The basic science responsible for the fascinating shapes of ice crystals and snowflakes is still not understood. Insufficient knowledge of the interaction potentials and the lack of relevant experimental access to the growth process are to blame for this failure. Here, we study the growth of fractal nanostructures in a two-dimensional (2D) system, intercalated between mica and graphene. Based on our scanning tunneling spectroscopy data, we provide compelling evidence that these fractals are 2D ice. They grow while they are in material contact with the atmosphere at 20 °C and without significant thermal contact to the ambient. The growth is studied in situ, in real time and space at the nanoscale. We find that the growing 2D ice nanocrystals assume a fractal shape, which is conventionally attributed to Diffusion Limited Aggregation (DLA). However, DLA requires a low mass density mother phase, in contrast to the actual currently present high mass density mother phase. Latent heat effects and consequent transport of heat and molecules are found to be key ingredients for understanding the evolution of the snow (ice) flakes. We conclude that not the local availability of water molecules (DLA), but rather them having the locally required orientation is the key factor for incorporation into the 2D ice nanocrystal. In combination with the transport of latent heat, we attribute the evolution of fractal 2D ice nanocrystals to local temperature dependent rotation limited aggregation. The ice growth occurs under extreme supersaturation, i.e., the conditions closely resemble the natural ones for the growth of complex 2D snow (ice) flakes and we consider our findings crucial for solving the "perennial" snow (ice) flake enigma.

The human GINS complex associates with Cdc45 and MCM and is essential for DNA replication

PubMed Central

Aparicio, Tomás; Guillou, Emmanuelle; Coloma, Javier; Montoya, Guillermo; Méndez, Juan

2009-01-01

The GINS complex, originally discovered in Saccharomyces cerevisiae and Xenopus laevis, binds to DNA replication origins shortly before the onset of S phase and travels with the replication forks after initiation. In this study we present a detailed characterization of the human GINS (hGINS) homolog. Using new antibodies that allow the detection of endogenous hGINS in cells and tissues, we have examined its expression, abundance, subcellular localization and association with other DNA replication proteins. Expression of hGINS is restricted to actively proliferating cells. During the S phase, hGINS becomes part of a Cdc45–MCM–GINS (CMG) complex that is assembled on chromatin. Down-regulation of hGINS destabilizes CMG, causes a G1–S arrest and slows down ongoing DNA replication, effectively blocking cell proliferation. Our data support the notion that hGINS is an essential component of the human replisome. PMID:19223333

Arctic Mixed-phase Clouds Simulated by a Cloud-Resolving Model: Comparison with ARM Observations and Sensitivity to Microphysics Parameterizations

NASA Technical Reports Server (NTRS)

Xu, Kuan-Man; Luo, Yali; Morrison, Hugh; Mcfarquhar, G.M.

2008-01-01

Single-layer mixed-phase stratiform (MPS) Arctic clouds, which formed under conditions of large surface heat flux combined with general subsidence during a subperiod of the Atmospheric Radiation Measurement (ARM) Program Mixed-Phase Arctic Cloud Experiment (M-PACE), are simulated with a cloud resolving model (CRM). The CRM is implemented with either an advanced two-moment (M05) or a commonly used one-moment (L83) bulk microphysics scheme and a state-of-the-art radiative transfer scheme. The CONTROL simulation, that uses the M05 scheme and observed aerosol size distribution and ice nulei (IN) number concentration, reproduces the magnitudes and vertical structures of cloud liquid water content (LWC), total ice water content (IWC), number concentration and effective radius of cloud droplets as suggested by the M-PACE observations. It underestimates ice crystal number concentrations by an order of magnitude and overestimates effective radius of ice crystals by a factor of 2-3. The OneM experiment, that uses the L83 scheme, produces values of liquid water path (LWP) and ice plus snow water path (ISWP) that were about 30% and 4 times, respectively, of those produced by the CONTROL. Its vertical profile of IWC exhibits a bimodal distribution in contrast to the constant distribution of IWC produced in the CONTROL and observations.

The early rise and late demise of New Zealand’s last glacial maximum

PubMed Central

Rother, Henrik; Fink, David; Shulmeister, James; Mifsud, Charles; Evans, Michael; Pugh, Jeremy

2014-01-01

Recent debate on records of southern midlatitude glaciation has focused on reconstructing glacier dynamics during the last glacial termination, with different results supporting both in-phase and out-of-phase correlations with Northern Hemisphere glacial signals. A continuing major weakness in this debate is the lack of robust data, particularly from the early and maximum phase of southern midlatitude glaciation (∼30–20 ka), to verify the competing models. Here we present a suite of 58 cosmogenic exposure ages from 17 last-glacial ice limits in the Rangitata Valley of New Zealand, capturing an extensive record of glacial oscillations between 28–16 ka. The sequence shows that the local last glacial maximum in this region occurred shortly before 28 ka, followed by several successively less extensive ice readvances between 26–19 ka. The onset of Termination 1 and the ensuing glacial retreat is preserved in exceptional detail through numerous recessional moraines, indicating that ice retreat between 19–16 ka was very gradual. Extensive valley glaciers survived in the Rangitata catchment until at least 15.8 ka. These findings preclude the previously inferred rapid climate-driven ice retreat in the Southern Alps after the onset of Termination 1. Our record documents an early last glacial maximum, an overall trend of diminishing ice volume in New Zealand between 28–20 ka, and gradual deglaciation until at least 15 ka. PMID:25071171

Laboratory Spectroscopy of Ices of Astrophysical Interest

NASA Technical Reports Server (NTRS)

Hudson, Reggie; Moore, M. H.

2011-01-01

Ongoing and future NASA and ESA astronomy missions need detailed information on the spectra of a variety of molecular ices to help establish the identity and abundances of molecules observed in astronomical data. Examples of condensed-phase molecules already detected on cold surfaces include H2O, CO, CO2, N2, NH3, CH4, SO2, O2, and O3. In addition, strong evidence exists for the solid-phase nitriles HCN, HC3N, and C2N2 in Titan's atmosphere. The wavelength region over which these identifications have been made is roughly 0.5 to 100 micron. Searches for additional features of complex carbon-containing species are in progress. Existing and future observations often impose special requirements on the information that comes from the laboratory. For example, the measurement of spectra, determination of integrated band strengths, and extraction of complex refractive indices of ices (and icy mixtures) in both amorphous and crystalline phases at relevant temperatures are all important tasks. In addition, the determination of the index of refraction of amorphous and crystalline ices in the visible region is essential for the extraction of infrared optical constants. Similarly, the measurement of spectra of ions and molecules embedded in relevant ices is important. This laboratory review will examine some of the existing experimental work and capabilities in these areas along with what more may be needed to meet current and future NASA and ESA planetary needs.

On the Method of Efficient Ice Cold Energy Storage Using a Heat Transfer of Direct Contact Phase Change and a Natural Circulation of a Working Medium in an Enclosure

NASA Astrophysics Data System (ADS)

Utaka, Yoshio; Saito, Akio; Nakata, Naoki

The objectives of this report are to propose a new method of the high performance cold energy storage using ice as a phase change material and to clarify the heat transfer characteristics of the apparatus of ice cold energy storage based on the proposed principle. A working medium vapor layer a water layer and a working medium liquid layer stratified in this order from the top were kept in an enclosure composed of a condenser, an evaporator and a condensate receiver-and-return tube. The direct contact heat transfers between water or ice and a working medium in an enclosure were applied for realizing the high performance cold energy storage and release. In the storage and release processes, water changes the phase between the liquid and the solid, and the working medium cnanges between the vapor and the liquid with a natural circulation. Experimental apparatus was manufactured and R12 and R114 were selected as working media in the thermal energy storage enclosure. It was confirmed by the measurements that the efficient formation and melting of ice were achieved. Then, th e heat transfer characteristics were clarified for the effects of the initial water height, the initial height of woking medium liquid layer and the inlet coolant temperature.

The early rise and late demise of New Zealand's last glacial maximum.

PubMed

Rother, Henrik; Fink, David; Shulmeister, James; Mifsud, Charles; Evans, Michael; Pugh, Jeremy

2014-08-12

Recent debate on records of southern midlatitude glaciation has focused on reconstructing glacier dynamics during the last glacial termination, with different results supporting both in-phase and out-of-phase correlations with Northern Hemisphere glacial signals. A continuing major weakness in this debate is the lack of robust data, particularly from the early and maximum phase of southern midlatitude glaciation (∼30-20 ka), to verify the competing models. Here we present a suite of 58 cosmogenic exposure ages from 17 last-glacial ice limits in the Rangitata Valley of New Zealand, capturing an extensive record of glacial oscillations between 28-16 ka. The sequence shows that the local last glacial maximum in this region occurred shortly before 28 ka, followed by several successively less extensive ice readvances between 26-19 ka. The onset of Termination 1 and the ensuing glacial retreat is preserved in exceptional detail through numerous recessional moraines, indicating that ice retreat between 19-16 ka was very gradual. Extensive valley glaciers survived in the Rangitata catchment until at least 15.8 ka. These findings preclude the previously inferred rapid climate-driven ice retreat in the Southern Alps after the onset of Termination 1. Our record documents an early last glacial maximum, an overall trend of diminishing ice volume in New Zealand between 28-20 ka, and gradual deglaciation until at least 15 ka.

The cloud-phase feedback in the Super-parameterized Community Earth System Model

NASA Astrophysics Data System (ADS)

Burt, M. A.; Randall, D. A.

2016-12-01

Recent comparisons of observations and climate model simulations by I. Tan and colleagues have suggested that the Wegener-Bergeron-Findeisen (WBF) process tends to be too active in climate models, making too much cloud ice, and resulting in an exaggerated negative cloud-phase feedback on climate change. We explore the WBF process and its effect on shortwave cloud forcing in present-day and future climate simulations with the Community Earth System Model, and its super-parameterized counterpart. Results show that SP-CESM has much less cloud ice and a weaker cloud-phase feedback than CESM.

An interannual link between Arctic sea-ice cover and the North Atlantic Oscillation

NASA Astrophysics Data System (ADS)

Caian, Mihaela; Koenigk, Torben; Döscher, Ralf; Devasthale, Abhay

2018-01-01

This work investigates links between Arctic surface variability and the phases of the winter (DJF) North Atlantic Oscillation (NAO) on interannual time-scales. The analysis is based on ERA-reanalysis and model data from the EC-Earth global climate model. Our study emphasizes a mode of sea-ice cover variability that leads the NAO index by 1 year. The mechanism of this leading is based on persistent surface forcing by quasi-stationary meridional thermal gradients. Associated thermal winds lead a slow adjustment of the pressure in the following winter, which in turn feeds-back on the propagation of sea-ice anomalies. The pattern of the sea-ice mode leading NAO has positive anomalies over key areas of South-Davis Strait-Labrador Sea, the Barents Sea and the Laptev-Ohkostsk seas, associated to a high pressure anomaly over the Canadian Archipelago-Baffin Bay and the Laptev-East-Siberian seas. These anomalies create a quasi-annular, quasi-steady, positive gradient of sea-ice anomalies about coastal line (when leading the positive NAO phase) and force a cyclonic vorticity anomaly over the Arctic in the following winter. During recent decades in spite of slight shifts in the modes' spectral properties, the same leading mechanism remains valid. Encouraging, actual models appear to reproduce the same mechanism leading model's NAO, relative to model areas of persistent surface forcing. This indicates that the link between sea-ice and NAO could be exploited as a potential skill-source for multi-year prediction by addressing the key problem of initializing the phase of the NAO/AO (Arctic Oscillation).

Microwave Polarized Signatures Generated within Cloud Systems: SSM/I Observations Interpreted with Radiative Transfer Simulations

NASA Technical Reports Server (NTRS)

Prigent, Catherine; Pardo, Juan R.; Mishchenko, Michael I.; Rossow, Willaim B.; Hansen, James E. (Technical Monitor)

2001-01-01

Special Sensor Microwave /Imager (SSM/I) observations in cloud systems are studied over the tropics. Over optically thick cloud systems, presence of polarized signatures at 37 and 85 GHz is evidenced and analyzed with the help of cloud top temperature and optical thickness extracted from visible and IR satellite observations. Scattering signatures at 85 GHz (TbV(85) less than or = 250 K) are associated with polarization differences greater than or = 6 K, approx. 50%, of the time over ocean and approx. 40% over land. In addition. over thick clouds the polarization difference at 37 GHz is rarely negligible. The polarization differences at 37 and 85 GHz do not stem from the surface but are generated in regions of relatively homogeneous clouds having high liquid water content. To interpret the observations, a radiative transfer model that includes the scattering by non-spherical particles is developed. based on the T-matrix approach and using the doubling and adding method. In addition to handling randomly and perfectly oriented particles, this model can also simulate the effect of partial orientation of the hydrometeors. Microwave brightness temperatures are simulated at SSM/I frequencies and are compared with the observations. Polarization differences of approx. 2 K can be simulated at 37 GHz over a rain layer, even using spherical drops. The polarization difference is larger for oriented non-spherical particles. The 85 GHz simulations are very sensitive to the ice phase of the cloud. Simulations with spherical particles or with randomly oriented non-spherical ice particles cannot replicate the observed polarization differences. However, with partially oriented non-spherical particles, the observed polarized signatures at 85 GHz are explained, and the sensitivity of the scattering characteristics to the particle size, asphericity, and orientation is analyzed. Implications on rain and ice retrievals are discussed.

A new concept for glacial geological investigations of surges, based on High-Arctic examples (Svalbard)

NASA Astrophysics Data System (ADS)

Lønne, Ida

2016-01-01

Svalbard is a key area for the investigation of glacial surges, and almost two centuries worth of field observations exists from this region. Studies have shown that the course of a surge and the associated formation of landforms are strongly influenced by basinal factors, and that the broad range of variables involved can hamper interpretations and comparisons. Based on a review of surges in Svalbard, a new concept for glacial geological investigations has been developed that combines ice-flows, ice-front movements, and morphostratigraphy. The concept is comprised of the following four elements: 1) classification based on the configuration and characteristics of the receiving basin, 2) division of the surge cycle into six stages, 3) guidelines for morphological mapping, and 4) use of an allostratigraphic approach for interpreting ice-front movements. In this context, delineation of the active phase is critical, which include the history of terminus movements, and four main categories of receiving basins are recognized. These are (A) terrestrial basins with deformable substrates, (B) terrestrial basins with poorly deformable substrates, (C) shallow water basins, and (D) deep water basins. The ice-front movement history is reconstructed by coupling information from the proglacial moraines (syn-surge), the supraglacial moraines (post-surge), and the associated traces of meltwater to the surge stages (I-VI). This approach has revealed a critical relationship between the termination of the active phase and three morphological elements, namely, the maximum ice-front position, the maximum moraine extent and the youngest proglacial moraine, which are unique for each of the basins A-D. The concept is thus a novel and more precise approach for mapping the active phase and the active phase duration, as shown by the ∼12-year long surge of Fridtjovbreen, where stage I was 30 months (inception), stage II was 54 months (ice-front advance), stage III was 12 months (stillstand), and stage IV was 48 months (retreat during active flow). The glacier has been in quiescent phase (stages V/VI) since 2002.