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Sample records for ri ja eluhoone

  1. The rare-RI ring

    NASA Astrophysics Data System (ADS)

    Ozawa, A.; Uesaka, T.; Wakasugi, M.; Rare-RI Ring Collaboration

    2012-12-01

    We describe the rare-RI (radioactive isotope) ring at the RI Beam Factory (RIBF). The main purpose of the rare-RI ring is to measure the mass of very neutron-rich nuclei, the production rates of which are very small (hence ‘rare RI’) and the lifetimes of which are predicted to be very short. In the rare-RI ring, there are two innovative pieces of apparatus: individual injection, which can realize the injection of 200 A MeV rare RIs one by one, and a cyclotron-like storage ring, which allows high isochronous magnetic fields with large angular and momentum acceptances. With these devices, we will achieve a 10-6 mass resolution, and will be able to access rare RIs, the production rate of which is down to 1 event/day/pnA. Construction of the rare-RI ring started in fiscal year 2012.

  2. Mass Measurement with Rare-RI Rin

    NASA Astrophysics Data System (ADS)

    Ozawa, Akira

    2014-09-01

    Mass measurement with Rare-RI Ring in RIKEN RI Beam Factory (RIBF) will be presented. The main purpose of Rare-RI Ring is to measure the mass for very neutron-rich nuclei, the production rate of which is very small (rare RI) and the life-time of which is predicted to be very short (less than 10 ms). In Rare-RI Ring, mass measurements will be performed based on isochronous mass spectrometry. There are two innovative apparatus in Rare-RI Ring: individual injection, which can realize the injection of 200 A MeV rare RI one-by-one, and a cyclotron-like storage ring, which allows high isochronous magnetic fields with large angular and momentum acceptances (~1%). By these apparatus, we will achieve a 10-6 mass resolution, and will be able to access rare RI, the production rate of which is down to 1 event/day/pnA in RIBF. Construction of Rare-RI Ring has started from the 2012 fiscal year. Construction of the storage ring itself was almost completed. In this fiscal year, we succeeded to store alphas from 241Am source and to check the production of isochronous fields in the storage ring. In this talk, present status of Rare-RI Ring and the possible mass measurement there will be presented.

  3. RI 1170 advanced strapdown gyro

    NASA Technical Reports Server (NTRS)

    1973-01-01

    The major components of the RI 1170 gyroscope are described. A detailed functional description of the electronics including block diagrams and photographs of output waveshapes within the loop electronics are presented. An electronic data flow diagram is included. Those gyro subassemblies that were originally planned and subsequently changed or modified for one reason or another are discussed in detail. Variations to the original design included the capacitive pickoffs, torquer flexleads, magnetic suspension, gas bearings, electronic design, and packaging. The selection of components and changes from the original design and components selected are discussed. Device failures experienced throughout the program are reported and design corrections to eliminate the failure modes are noted. Major design deficiencies such as those of the MSE electronics are described in detail. Modifications made to the gas bearing parts and design improvements to the wheel are noted. Changes to the gas bearing prints are included as well as a mathematical analysis of the 1170 gas bearing wheel by computer analysis. The mean free-path effects on gas bearing performance is summarized.

  4. Riken RI Beam Factory, Harvest Time

    NASA Astrophysics Data System (ADS)

    En'yo, H.

    2015-06-01

    At RIKEN RI Beam Factory (RIBF), having all the experimental facilities in place, the uranium-beam intensity recorded 25pnA in 2014. With use of this powerful beam many experiments are begin performed by variety of researchers from all over the world, producing a lot of new data which were just a dream in several years ago. Recent status of RIKEN RI Beam Factory (RIBF) is presented with future prospects in science and an accelerator plan.

  5. 76 FR 50770 - Submission for Review: Financial Resources Questionnaire (RI 34-1, RI 34-17, and RI 34-18) and...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-16

    ... Resources Questionnaire (RI 34-1), Financial Resources Questionnaire--Federal Employees' Group Life Insurance Premiums Underpaid (RI 34-17), and Financial Resources Questionnaire--Federal Employees Health Benefits Premiums Underpaid (RI 34-18), collects detailed financial information for use by OPM to...

  6. 77 FR 6010 - Anchorage Regulations; Newport, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-07

    ..., DHS. ACTION: Final rule. SUMMARY: The Coast Guard is changing the shape and expanding the dimensions...; Newport, RI'' in the Federal Register (76 FR 59596). We received no comments on the proposed rule. Basis... this rule is to change the shape and expand the dimensions of anchorage ``D'' at Newport, Rhode...

  7. 34. Boston switch interlocking tower. Central Falls, Providence Co., RI. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    34. Boston switch interlocking tower. Central Falls, Providence Co., RI. Sec. 4116, mp 190.40. - Northeast Railroad Corridor, Amtrak route between CT & MA state lines, Providence, Providence County, RI

  8. Outreach and Education with Europlanet 2020 RI

    NASA Astrophysics Data System (ADS)

    Heward, Anita R.; Barrosa, Mariana; Europlanet 2020 RI

    2016-10-01

    Since 2005, Europlanet has provided a framework to bring together Europe's widespread planetary science community. The project has evolved through a number of phases, and currently comprises a Research Infrastructure (RI) funded through the European Commission's Horizon 2020 program, as well as a self-sustaining membership organization. Launched in September 2015, Europlanet 2020 RI provides support, services, access to facilities, new research tools and a virtual planetary observatory. Europlanet 2020 RI's outreach and education program aims to engage members of the public, schools, teachers, policy makers and industrial partners across Europe with planetary science and the opportunities that it provides for innovation, inspiration and job creation. Europlanet's outreach and education activities are led by Science Office Ltd, a Portuguese-based SME, and a network of partners spread across nine countries including University College London, the University of Leiden, University of Latvia, Vilnius University, the Institute of Accelerating Systems and Applications, the Observatoire de Paris, CAB-INTA and the Austrian Space Forum.Europlanet supports educators and outreach providers within the planetary science community by organizing meetings, best practice workshops and communication training sessions, offering a seed-funding scheme for outreach activities, and awarding an annual prize for public engagement. Europlanet is also developing its own education and outreach resources, including an animation on 'Jupiter and its Icy Moons' (the first in a series of video "shorts") and kits for hands-on comparative planetology activities. The Europlanet Media Centre uses traditional and social media channels to communicate newsworthy results and activities to diverse audiences in Europe and worldwide. Using tools like Google Hangouts, the project connects planetary researchers directly with the public and school groups. In addition, Europlanet engages with policy makers in the

  9. Radio Meteors Observations Techniques at RI NAO

    NASA Astrophysics Data System (ADS)

    Vovk, Vasyl; Kaliuzhnyi, Mykola

    2016-07-01

    The Solar system is inhabited with large number of celestial bodies. Some of them are well studied, such as planets and vast majority of big asteroids and comets. There is one group of objects which has received little attention. That is meteoroids with related to them meteors. Nowadays enough low-technology high-efficiency radio-technical solutions are appeared which allow to observe meteors daily. At RI NAO three methodologies for meteor observation are developed: single-station method using FM-receiver, correlation method using FM-receiver and Internet resources, and single-station method using low-cost SDR-receiver.

  10. Construction of rare-RI ring at RIKEN RI Beam Factory

    NASA Astrophysics Data System (ADS)

    Yamaguchi, Y.; Wakasugi, M.; Uesaka, T.; Ozawa, A.; Abe, Y.; Fujinawa, T.; Kase, M.; Komiyama, M.; Kubo, T.; Kumagai, K.; Maie, T.; Nagae, D.; Ohnishi, J.; Suzaki, F.; Tokuchi, A.; Watanabe, Y.; Yoshida, K.; Yamada, K.; Yamaguchi, T.; Yamasawa, H.; Yanagisawa, Y.; Zenihiro, J.; Yano, Y.

    2013-12-01

    An isochronous mass spectroscopy system using a newly constructed storage ring named the “rare-RI ring” is expected to be implemented at the RIKEN Nishina Center to determine the masses of short-lived rare nuclei including those in the r-process region with a relative precision of the order of 10-6 even for only one particle. In an isochronous storage ring, the mass is determined by measuring the revolution time of each nucleus. Our rare-RI ring consists of six magnetic sectors, and each sector consists of four bending magnets. To precisely optimize the isochronous conditions of the circulating particles for large acceptance, we install ten trim coils to half of the bending magnets. A fast-response and fast-charging kicker system enables selective and efficient injection of the produced rare nuclei into the ring one by one, along with facilitating efficient extraction of the circulating particles for time-of-flight measurement. Construction of the rare-RI ring was begun in the middle of the fiscal year 2012 at the RIKEN RI Beam Factory, and the ring is expected to be fully functional by 2015.

  11. Rare-RI ring for mass measurements at RIBF

    SciTech Connect

    Ozawa, Akira

    2014-05-02

    The rare-RI (radioactive isotope) ring at the RIKEN RI Beam Factory is described. The main purpose of the rare-RI ring is to measure the mass of short-lived rare RI. In the rare-RI ring, the mass is determined by measuring the revolution time of each nucleus based on isochronous mass spectrometry. The rare-RI ring consists of six magnetic sectors, and each sector consists of four dipole magnets. To precisely optimize the isochronous conditions of the circulating particles for large acceptance, we install 10 trim coils to half of the dipole magnets. Individual injection system enables efficient injection of the produced rare RI into the ring one by one. With facilitating efficient extraction of the circulating particles, time-of-flight measurements can be performed to the each rare RI. Construction of the rare-RI ring was begun in the middle of the fiscal year 2012, and the ring is expected to be fully functional by 2015, when we can start the mass measurements for unknown masses.

  12. Rare-RI ring for mass measurements at RIBF

    NASA Astrophysics Data System (ADS)

    Ozawa, Akira

    2014-05-01

    The rare-RI (radioactive isotope) ring at the RIKEN RI Beam Factory is described. The main purpose of the rare-RI ring is to measure the mass of short-lived rare RI. In the rare-RI ring, the mass is determined by measuring the revolution time of each nucleus based on isochronous mass spectrometry. The rare-RI ring consists of six magnetic sectors, and each sector consists of four dipole magnets. To precisely optimize the isochronous conditions of the circulating particles for large acceptance, we install 10 trim coils to half of the dipole magnets. Individual injection system enables efficient injection of the produced rare RI into the ring one by one. With facilitating efficient extraction of the circulating particles, time-of-flight measurements can be performed to the each rare RI. Construction of the rare-RI ring was begun in the middle of the fiscal year 2012, and the ring is expected to be fully functional by 2015, when we can start the mass measurements for unknown masses.

  13. 33 CFR 334.80 - Narragansett Bay, RI; restricted area.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Narragansett Bay, RI; restricted area. 334.80 Section 334.80 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.80 Narragansett Bay, RI;...

  14. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  15. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  16. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  17. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  18. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  19. Characterization of Three New Glutaredoxin Genes in the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis: Putative Role of RiGRX4 and RiGRX5 in Iron Homeostasis.

    PubMed

    Tamayo, Elisabeth; Benabdellah, Karim; Ferrol, Nuria

    2016-01-01

    Glutaredoxins (GRXs) are small ubiquitous oxidoreductases involved in the regulation of the redox state in living cells. In an attempt to identify the full complement of GRXs in the arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis, three additional GRX homologs, besides the formerly characterized GintGRX1 (renamed here as RiGRX1), were identified. The three new GRXs (RiGRX4, RiGRX5 and RiGRX6) contain the CXXS domain of monothiol GRXs, but whereas RiGRX4 and RiGRX5 belong to class II GRXs, RiGRX6 belongs to class I together with RiGRX1. By using a yeast expression system, we observed that the newly identified homologs partially reverted sensitivity of the GRX deletion yeast strains to external oxidants. Furthermore, our results indicated that RiGRX4 and RiGRX5 play a role in iron homeostasis in yeast. Gene expression analyses revealed that RiGRX1 and RiGRX6 were more highly expressed in the intraradical (IRM) than in the extraradical mycelium (ERM). Exposure of the ERM to hydrogen peroxide induced up-regulation of RiGRX1, RiGRX4 and RiGRX5 gene expression. RiGRX4 expression was also up-regulated in the ERM when the fungus was grown in media supplemented with a high iron concentration. These data indicate the two monothiol class II GRXs, RiGRX4 and RiGRX5, might be involved in oxidative stress protection and in the regulation of fungal iron homeostasis. Increased expression of RiGRX1 and RiGRX6 in the IRM suggests that these GRXs should play a key role in oxidative stress protection of R. irregularis during its in planta phase.

  20. Characterization of Three New Glutaredoxin Genes in the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis: Putative Role of RiGRX4 and RiGRX5 in Iron Homeostasis

    PubMed Central

    Tamayo, Elisabeth; Benabdellah, Karim; Ferrol, Nuria

    2016-01-01

    Glutaredoxins (GRXs) are small ubiquitous oxidoreductases involved in the regulation of the redox state in living cells. In an attempt to identify the full complement of GRXs in the arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis, three additional GRX homologs, besides the formerly characterized GintGRX1 (renamed here as RiGRX1), were identified. The three new GRXs (RiGRX4, RiGRX5 and RiGRX6) contain the CXXS domain of monothiol GRXs, but whereas RiGRX4 and RiGRX5 belong to class II GRXs, RiGRX6 belongs to class I together with RiGRX1. By using a yeast expression system, we observed that the newly identified homologs partially reverted sensitivity of the GRX deletion yeast strains to external oxidants. Furthermore, our results indicated that RiGRX4 and RiGRX5 play a role in iron homeostasis in yeast. Gene expression analyses revealed that RiGRX1 and RiGRX6 were more highly expressed in the intraradical (IRM) than in the extraradical mycelium (ERM). Exposure of the ERM to hydrogen peroxide induced up-regulation of RiGRX1, RiGRX4 and RiGRX5 gene expression. RiGRX4 expression was also up-regulated in the ERM when the fungus was grown in media supplemented with a high iron concentration. These data indicate the two monothiol class II GRXs, RiGRX4 and RiGRX5, might be involved in oxidative stress protection and in the regulation of fungal iron homeostasis. Increased expression of RiGRX1 and RiGRX6 in the IRM suggests that these GRXs should play a key role in oxidative stress protection of R. irregularis during its in planta phase. PMID:26900849

  1. Characterization of Three New Glutaredoxin Genes in the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis: Putative Role of RiGRX4 and RiGRX5 in Iron Homeostasis.

    PubMed

    Tamayo, Elisabeth; Benabdellah, Karim; Ferrol, Nuria

    2016-01-01

    Glutaredoxins (GRXs) are small ubiquitous oxidoreductases involved in the regulation of the redox state in living cells. In an attempt to identify the full complement of GRXs in the arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis, three additional GRX homologs, besides the formerly characterized GintGRX1 (renamed here as RiGRX1), were identified. The three new GRXs (RiGRX4, RiGRX5 and RiGRX6) contain the CXXS domain of monothiol GRXs, but whereas RiGRX4 and RiGRX5 belong to class II GRXs, RiGRX6 belongs to class I together with RiGRX1. By using a yeast expression system, we observed that the newly identified homologs partially reverted sensitivity of the GRX deletion yeast strains to external oxidants. Furthermore, our results indicated that RiGRX4 and RiGRX5 play a role in iron homeostasis in yeast. Gene expression analyses revealed that RiGRX1 and RiGRX6 were more highly expressed in the intraradical (IRM) than in the extraradical mycelium (ERM). Exposure of the ERM to hydrogen peroxide induced up-regulation of RiGRX1, RiGRX4 and RiGRX5 gene expression. RiGRX4 expression was also up-regulated in the ERM when the fungus was grown in media supplemented with a high iron concentration. These data indicate the two monothiol class II GRXs, RiGRX4 and RiGRX5, might be involved in oxidative stress protection and in the regulation of fungal iron homeostasis. Increased expression of RiGRX1 and RiGRX6 in the IRM suggests that these GRXs should play a key role in oxidative stress protection of R. irregularis during its in planta phase. PMID:26900849

  2. 75 FR 22872 - Rhode Island Disaster Number RI-00006

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-30

    ... ADMINISTRATION Rhode Island Disaster Number RI-00006 AGENCY: U.S. Small Business Administration. ACTION... of Rhode Island (FEMA-1894-DR), dated 03/ 29/2010. Incident: Severe storms and flooding. Incident... of Rhode Island, dated 03/29/2010 is hereby amended to establish the incident period for...

  3. 75 FR 17178 - Rhode Island Disaster #RI-00006

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-05

    ... ADMINISTRATION Rhode Island Disaster RI-00006 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY: This is a Notice of the Presidential declaration of a major disaster for the State of Rhode Island.... Contiguous Counties (Economic Injury Loans Only): Rhode Island: Bristol. Connecticut: New London,...

  4. 78 FR 4967 - Rhode Island Disaster #RI-00010

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-23

    ... ADMINISTRATION Rhode Island Disaster RI-00010 AGENCY: U.S. Small Business Administration. ACTION: Amendment 1... Island (FEMA-4089-DR), dated 11/ 14/2012. Incident: Hurricane Sandy. Incident Period: 10/26/2012 through... the President's major disaster declaration for the State of Rhode Island, dated 11/14/2012 is...

  5. 77 FR 67857 - Rhode Island Disaster #RI-00011

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-14

    ... From the Federal Register Online via the Government Publishing Office SMALL BUSINESS ADMINISTRATION Rhode Island Disaster RI-00011 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY... State of Rhode Island (FEMA-4089-DR), dated 11/03/2012. Incident: Hurricane Sandy. Incident Period:...

  6. 75 FR 19666 - Rhode Island Disaster #RI-00007

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-15

    ... From the Federal Register Online via the Government Publishing Office SMALL BUSINESS ADMINISTRATION Rhode Island Disaster RI-00007 AGENCY: Small Business Administration. ACTION: Notice. SUMMARY... State of Rhode Island (FEMA-1894-DR), dated 04/08/2010. Incident: Severe Storms and Flooding....

  7. 75 FR 22873 - Rhode Island Disaster Number RI-00007

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-30

    ... ADMINISTRATION Rhode Island Disaster Number RI-00007 AGENCY: U.S. Small Business Administration. ACTION... Assistance Only for the State of Rhode Island (FEMA-1894-DR), dated 04/08/2010. Incident: Severe storms and... Private Non-Profit organizations in the State of Rhode Island, dated 04/08/2010, is hereby amended...

  8. 77 FR 70203 - Rhode Island Disaster #RI-00010

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-23

    ... ADMINISTRATION Rhode Island Disaster RI-00010 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY: This is a Notice of the Presidential declaration of a major disaster for the State of Rhode Island...): Rhode Island: Kent. Connecticut: New London. Massachusetts: Bristol. The Interest Rates are: Percent...

  9. 77 FR 69915 - Rhode Island Disaster Number RI-00011

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-21

    ... ADMINISTRATION Rhode Island Disaster Number RI-00011 AGENCY: U.S. Small Business Administration. ACTION... Assistance Only for the State of Rhode Island (FEMA-4089-DR), dated 11/03/2012. Incident: Hurricane Sandy... Private Non-Profit organizations in the State of RHODE ISLAND, dated 11/03/2012, is hereby amended...

  10. 75 FR 18554 - Rhode Island Disaster Number RI-00006

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-12

    ... ADMINISTRATION Rhode Island Disaster Number RI-00006 AGENCY: U.S. Small Business Administration. ACTION... of Rhode Island (FEMA-1894-DR), dated 03/ 29/2010. Incident: Severe storms and flooding. Incident... INFORMATION: The notice of the Presidential disaster declaration for the State of Rhode Island, dated...

  11. 78 FR 21492 - Rhode Island Disaster #RI-00012

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-10

    ... From the Federal Register Online via the Government Publishing Office ] SMALL BUSINESS ADMINISTRATION Rhode Island Disaster RI-00012 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY... State of Rhode Island (FEMA-4107-DR), dated 03/22/2013. Incident: Severe winter storm and...

  12. 76 FR 61131 - Rhode Island Disaster #RI-00008

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-03

    ... ADMINISTRATION Rhode Island Disaster RI-00008 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY: This is a notice of an Administrative declaration of a disaster for the State of Rhode Island dated 09... Island: Bristol, Kent. Connecticut: Windham. Massachusetts: Bristol, Norfolk, Worcester. The...

  13. Genetics Home Reference: Léri-Weill dyschondrosteosis

    MedlinePlus

    ... arched palate. Léri-Weill dyschondrosteosis occurs in both males and females, although its signs and symptoms tend to be more severe in females. Researchers believe that the more severe features may result from hormonal differences. Related Information What does it mean if a ...

  14. Structure of RiVax: a recombinant ricin vaccine

    SciTech Connect

    Legler, Patricia M.; Brey, Robert N.; Smallshaw, Joan E.; Vitetta, Ellen S.; Millard, Charles B.

    2011-09-01

    The X-ray crystal structure (at 2.1 Å resolution) of an immunogen under development as part of a ricin vaccine for humans is presented and structure-based analysis of the results was conducted with respect to related proteins and the known determinants for inducing or suppressing the protective immune response. RiVax is a recombinant protein that is currently under clinical development as part of a human vaccine to protect against ricin poisoning. RiVax includes ricin A-chain (RTA) residues 1–267 with two intentional amino-acid substitutions, V76M and Y80A, aimed at reducing toxicity. Here, the crystal structure of RiVax was solved to 2.1 Å resolution and it was shown that it is superposable with that of the ricin toxin A-chain from Ricinus communis with a root-mean-square deviation of 0.6 Å over 258 C{sup α} atoms. The RiVax structure is also compared with the recently determined structure of another potential ricin-vaccine immunogen, RTA 1–33/44–198 R48C/T77C. Finally, the locations and solvent-exposure of two toxin-neutralizing B-cell epitopes were examined and it was found that these epitopes are within or near regions predicted to be involved in catalysis. The results demonstrate the composition of the RiVax clinical material and will guide ongoing protein-engineering strategies to develop improved immunogens.

  15. Spin-Isospin responses via charge exchange reactions of RI beams at SHARAQ

    SciTech Connect

    Shimoura, Susumu

    2012-11-12

    Nuclear spectroscopy via direct reactions of RI beams is discussed focusing on characteristics of charge-exchange reactions of RI beams. Recent experiments using the SHARAQ spectrometer at the RIBF are presented, where isovector spin monopole and spin-non-flip monopole responses are studied by charge exchange reaction of RI beams. Some experimental plans and perspectives are also presented.

  16. 33 CFR 110.145 - Narragansett Bay, R.I.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... ANCHORAGE REGULATIONS Anchorage Grounds § 110.145 Narragansett Bay, R.I. (a) East Passage—(1) Anchorage A... following coordinates: Northeast Corner: 41°29.484′ N, 071°19.975′ W Northwest Corner: 41°29.484′ N, 071°20... vessel extend into the recommended vessel route in the East Passage of Narragansett Bay, a securite...

  17. 33 CFR 110.145 - Narragansett Bay, R.I.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... ANCHORAGE REGULATIONS Anchorage Grounds § 110.145 Narragansett Bay, R.I. (a) East Passage—(1) Anchorage A...: 41°29.484′ N, 071°19.975′ W Northwest Corner: 41°29.484′ N, 071°20.578′ W Southwest Corner: 41°29.005... vessel route in the East Passage of Narragansett Bay, a securite call notifying mariners of the...

  18. 33 CFR 110.145 - Narragansett Bay, R.I.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... ANCHORAGE REGULATIONS Anchorage Grounds § 110.145 Narragansett Bay, R.I. (a) East Passage—(1) Anchorage A... following coordinates: Northeast Corner: 41°29.484′ N, 071°19.975′ W Northwest Corner: 41°29.484′ N, 071°20... vessel extend into the recommended vessel route in the East Passage of Narragansett Bay, a securite...

  19. Quarry residuals RI/FS scoping document. [Weldon Spring quarry

    SciTech Connect

    Not Available

    1991-10-01

    The purpose of this document is to serve as a planning tool for the implementation of the Quarry Residual Remedial Investigation/Feasibility Study (RI/FS) process and to provide direct input to revising and updating the 1988 Work Plan for the Weldon Spring Site Remedial Action Project (WSSRAP) Remedial Investigation/Feasibility Study-Environmental Impact Statement for the Weldon Spring Site (RI/FS-EIS) (Peterson et al. 1988) for this effort. The scoping process is intended to outline the tasks necessary to develop and implement activities in compliance with the Comprehensive Environmental Response, Compensation and Liability Act-National Environmental Policy Act (CERCLA-NEPA) process from detailed planning through the appropriate decision document. In addition to scoping the entire process, this document will serve as the primary tool for planning and accomplishing all activities to be developed in the Quarry Residual RI/FS Work Plan. Subsequent tasks are difficult to plan at this time. 10 refs., 5 figs., 5 tabs.

  20. 77 FR 5581 - Submission for Review: Financial Resources Questionnaire (RI 34-1, RI 34-17) and Notice of Amount...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-03

    ... Resources Questionnaire (RI 34-1), Financial Resources Questionnaire--Federal Employees' Group Life Insurance Premiums Underpaid (RI 34-17), collects detailed financial information for use by OPM to determine... published in the Federal Register on August 16, 2011 at Volume 76 FR 50770 allowing for a 60-day...

  1. 76 FR 44051 - Submission for Review: Verification of Who Is Getting Payments, RI 38-107 and RI 38-147

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-07-22

    ... MANAGEMENT Submission for Review: Verification of Who Is Getting Payments, RI 38-107 and RI 38-147 AGENCY: U... collection request (ICR) 3206-0197, Verification of Who is Getting Payments. As required by the Paperwork.... 104-106), OPM is soliciting comments for this collection. The Office of Management and Budget...

  2. 76 FR 81999 - Submission for Review: Verification of Who Is Getting Payments, RI 38-107 and RI 38-147

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-29

    ... published in the Federal Register on July 22, 2011 at Volume 76 FR 44051 allowing for a 60-day public... MANAGEMENT Submission for Review: Verification of Who Is Getting Payments, RI 38-107 and RI 38-147 AGENCY: U... collection request (ICR) 3206-0197, Verification of Who is Getting Payments. As required by the...

  3. Improving Forecast Skill by Assimilation of AIRS Cloud Cleared Radiances RiCC

    NASA Technical Reports Server (NTRS)

    Susskind, Joel; Rosenberg, Robert I.; Iredell, Lena

    2015-01-01

    ECMWF, NCEP, and GMAO routinely assimilate radiosonde and other in-situ observations along with satellite IR and MW Sounder radiance observations. NCEP and GMAO use the NCEP GSI Data Assimilation System (DAS).GSI DAS assimilates AIRS, CrIS, IASI channel radiances Ri on a channel-by-channel, case-by-case basis, only for those channels i thought to be unaffected by cloud cover. This test excludes Ri for most tropospheric sounding channels under partial cloud cover conditions. AIRS Version-6 RiCC is a derived quantity representative of what AIRS channel i would have seen if the AIRS FOR were cloud free. All values of RiCC have case-by-case error estimates RiCC associated with them. Our experiments present to the GSI QCd values of AIRS RiCC in place of AIRS Ri observations. GSI DAS assimilates only those values of RiCC it thinks are cloud free. This potentially allows for better coverage of assimilated QCd values of RiCC as compared to Ri.

  4. Study on astrophysical reactions using low-energy RI beams

    NASA Astrophysics Data System (ADS)

    Yamaguchi, Hidetoshi

    2009-10-01

    In recent years, low-energy RI beams can be produced in a good intensity and they have been used for studying many astrophysical reactions. One of the facilities producing low-energy RI beams is CRIB (CNS Radio-Isotope Beam separator) [1,2], an RI-beam separator of Center for Nuclear Study, University of Tokyo. Taking CRIB as an example, recent improvements on the RI-beam production and experimental results on astrophysical studies are presented. Several experimental approaches have been taken for the studies on astrophysical reactions.The feature of each method are discussed based on real measurements performed at CRIB. One is the direct method, applied for measurements of reactions such as (α,p) [3]. Another is the measurement of proton/alpha resonance scattering using the thick target method in inverse kinematics, by which we can obtain information on the resonances relevant in astrophysical reactions [4,5]. A recent fruitful result was from a measurement of proton resonance scattering using a ^7Be beam [5]. The energy level structure of ^8B, revealed by the experiment, is especially of interest as it is related with the ^7Be(p,γ) ^8B reaction, responsible for the production of ^8B neutrinos in the sun. We successfully determined parameters of resonances in ^8B below 6.7 MeV, which may affect the ^7Be(p,γ)^8B reaction rate at the solar temparature. Indirect methods, such as ANC and the Trojan Horse Method, were also used in some of the measurements.[4pt] [1] S. Kubono et al., Eur. Phys. J. A13 (2002) 217.[0pt] [2] Y. Yanagisawa et al., Nucl. Instrum. Meth. Phys. Res., Sect. A 539 (2005) 74.[0pt] [3] M. Notani et al., Nucl. Phys. A 764 (2004) 113c.[0pt] [4] T. Teranishi et al., Phys. Lett. B 650 (2007) 129.[0pt] [5] H. Yamaguchi et al., Phys. Lett. B 672 (2009) 230.

  5. Coordinates and RI photometry of Large Magellanic Cloud carbon stars

    SciTech Connect

    Costa, E. )

    1990-07-01

    Coordinates and photoelectric RI magnitudes are given for 86 carbon stars discovered by Blanco et al. in four selected 0.12 deg sq areas of the LMC. A comparison with the photometry of Blanco et al. for carbon stars in three different fields of the LMC suggests that the luminosity distribution of the carbon stars may change from center to center in the LMC. This possibility is supported by the differences in the mean I magnitude of the carbon stars detected between the four areas studied. 16 refs.

  6. Monitoring of Eco RI-catalyzed cleavage reaction of fluorescent-labeled heterochiral DNA.

    PubMed

    Urata, Hidehito; Tamaki, Chihiro; Matsuno, Miki; Wada, Shun-Ichi; Akagi, Masao

    2007-01-01

    We have found the unusual reactivity of a heterochiral oligodeoxynucleotide toward restriction endonuclease Eco RI. To conduct the kinetic analysis of the reaction, fluorescent-labeled single-stranded oligodeoxynucleotide molecular beacons were designed and synthesized. The beacons showed a remarkable fluorescence response by addition of Eco RI. The results promise that the beacon could be an effective tool for the kinetic analysis of Eco RI-catalyzed cleavage reaction of the heterochiral oligodeoxynucleotide.

  7. Fragment molecular orbital calculation using the RI-MP2 method

    NASA Astrophysics Data System (ADS)

    Ishikawa, Takeshi; Kuwata, Kazuo

    2009-05-01

    The resolution of the identity second-order Møller-Plesset perturbation theory (RI-MP2) was introduced into the fragment molecular orbital (FMO) method, where the program of the RI-MP2 method was newly developed. After some test calculations with a small peptide, the performance of the RI-MP2 method with the FMO scheme was demonstrated for two biomolecular systems: the human immunodeficiency virus type 1 protease with the lopinavir molecule, and the prion protein with the GN8 molecule. These calculations showed the great advantage of FMO calculations using the RI-MP2 method over ordinary FMO calculations.

  8. Ethanol Inhibits High-Affinity Immunoglobulin E Receptor (FcεRI) Signaling in Mast Cells by Suppressing the Function of FcεRI-Cholesterol Signalosome.

    PubMed

    Draberova, Lubica; Paulenda, Tomas; Halova, Ivana; Potuckova, Lucie; Bugajev, Viktor; Bambouskova, Monika; Tumova, Magda; Draber, Petr

    2015-01-01

    Ethanol has multiple effects on biochemical events in a variety of cell types, including the high-affinity immunoglobulin E receptor (FcεRI) signaling in antigen-activated mast cells. However, the underlying molecular mechanism remains unknown. To get better understanding of the effect of ethanol on FcεRI-mediated signaling we examined the effect of short-term treatment with non-toxic concentrations of ethanol on FcεRI signaling events in mouse bone marrow-derived mast cells. We found that 15 min exposure to ethanol inhibited antigen-induced degranulation, calcium mobilization, expression of proinflammatory cytokine genes (tumor necrosis factor-α, interleukin-6, and interleukin-13), and formation of reactive oxygen species in a dose-dependent manner. Removal of cellular cholesterol with methyl-β-cyclodextrin had a similar effect and potentiated some of the inhibitory effects of ethanol. In contrast, exposure of the cells to cholesterol-saturated methyl-β-cyclodextrin abolished in part the inhibitory effect of ethanol on calcium response and production of reactive oxygen species, supporting lipid-centric theories of ethanol action on the earliest stages of mast cell signaling. Further studies showed that exposure to ethanol and/or removal of cholesterol inhibited early FcεRI activation events, including tyrosine phosphorylation of the FcεRI β and γ subunits, SYK kinases, LAT adaptor protein, phospholipase Cγ, STAT5, and AKT and internalization of aggregated FcεRI. Interestingly, ethanol alone, and particularly in combination with methyl-β-cyclodextrin, enhanced phosphorylation of negative regulatory tyrosine 507 of LYN kinase. Finally, we found that ethanol reduced passive cutaneous anaphylactic reaction in mice, suggesting that ethanol also inhibits FcεRI signaling under in vivo conditions. The combined data indicate that ethanol interferes with early antigen-induced signaling events in mast cells by suppressing the function of FcεRI

  9. The Humanities and Interrater Reliability: A Response to R. Stephen RiCharde

    ERIC Educational Resources Information Center

    Flick, Arend

    2009-01-01

    This article presents the author's critique of R. Stephen RiCharde's argument in his essay on the humanities and interrater reliability in the July-August 2008 issue of "Assessment Update." RiCharde suggests that the humanities' historical commitment to a dialectical pedagogy, a "nonlinear" process that values disagreement and debate, is at odds…

  10. Draft Genome Sequence of the Shellfish Larval Probiotic Bacillus pumilus RI06-95.

    PubMed

    Hamblin, Meagan; Spinard, Edward; Gomez-Chiarri, Marta; Nelson, David R; Rowley, David C

    2015-09-03

    Bacillus pumilus RI06-95 is a marine bacterium isolated in Narragansett, Rhode Island, which has shown probiotic activity against marine pathogens in larval shellfish. We report the genome of B. pumilus RI06-95, which provides insight into the microbe's probiotic ability and may be used in future studies of the probiotic mechanism.

  11. 78 FR 55124 - Submission for Review: Death Benefit Payment Rollover Election, RI 94-7

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-09

    ... MANAGEMENT Submission for Review: Death Benefit Payment Rollover Election, RI 94-7 AGENCY: U.S. Office of... (ICR) 3206-0218, Death Benefit Payment Rollover Election, RI 94-7. As required by the Paperwork... Services, Office of Personnel Management. Title: Death Benefit Payment Rollover Election. OMB:...

  12. 77 FR 66190 - Submission for Review: Annuitant's Report of Earned Income, RI 30-2

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-02

    ... Volume 77 FR 34414 allowing for a 60-day public comment period. No comments were received for this... MANAGEMENT Submission for Review: Annuitant's Report of Earned Income, RI 30-2 AGENCY: U.S. Office of... Income, RI 30-2. As required by the Paperwork Reduction Act of 1995, (Pub. L. 104-13, 44 U.S.C....

  13. 77 FR 43514 - Anchorage Regulations; Narragansett Bay and Rhode Island Sound, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-25

    ... Rhode Island Sound, RI,'' in the Federal Register (76 FR 15246). We received nine comments on the... Sound, RI AGENCY: Coast Guard, DHS. ACTION: Final rule. SUMMARY: The Coast Guard is removing an obsolete... Island Sound south of Brenton Point, Rhode Island, for use by vessels waiting to enter Narragansett...

  14. riDOM, a cell-penetrating peptide. Interaction with DNA and heparan sulfate.

    PubMed

    Québatte, Gabriela; Kitas, Eric; Seelig, Joachim

    2013-09-19

    DNA condensation in the presence of polycationic molecules is a well-known phenomenon exploited in gene delivery. riDOM (retro-inverso dioleoylmelittin) is a cell-penetrating peptide with excellent transporter properties for DNA. It is a chimeric molecule where ri-melittin is fused to dioleoylphosphoethanolamine. The physical-chemical properties of riDOM in solution and in the presence of DNA and heparan sulfate were investigated with spectroscopic and thermodynamic methods. Dynamic light scattering shows that riDOM in solution aggregates to well-defined nanoparticles with a diameter of ∼13 nm and a ζ-potential of 22 mV, composed of about 220-270 molecules. Binding of riDOM to DNA was studied with dynamic light scattering, ζ-potential measurements, and isothermal titration calorimetry and was compared with authentic melittin-DNA interaction. riDOM binds tightly to DNA with a microscopic binding constant of 5 × 10(7) M(-1) and a stoichiometry of 12 riDOM per 10 DNA base pairs. In the complex the DNA double strand is completely shielded by the more hydrophobic riDOM molecules. Authentic melittin binds to DNA with a much lower binding constant of 5 × 10(6) M(-1) and lower stoichiometry of 5 melittin per 10 DNA base pairs. The binding enthalpies for riDOM and melittin are small and the binding reactions are entropy-driven. Sulfated glycosaminoglycans such as heparan sulfate are also linear molecules with a negative charge. riDOM binding to heparan sulfate on cell surfaces can therefore interfere with DNA-riDOM binding. riDOM-heparan sulfate complex formation was characterized by isothermal titration calorimetry and spectroscopic methods. The binding constant of riDOM for heparan sulfate is K ≈ 2 × 10(6) M(-1). Authentic melittin has a similar binding constant but riDOM shows a 3-fold higher packing density on heparan sulfate than the distinctly smaller melittin.

  15. Confinement and transport in EC heated RI-mode discharges in TEXTOR

    NASA Astrophysics Data System (ADS)

    Hogeweij, G. M. D.; Dumortier, P.; Van Eester, D.; Hoekzema, F. A.; Jaspers, R. J. E.; Kalupin, D.; Koslowski, H. R.; Messiaen, A.; Polman, R. W.; Schüller, F. C.; Unterberg, B.; Vervier, M.; Van Wassenhove, G.; Westerhof, E.

    2004-04-01

    This paper reports on experiments in TEXTOR with electron cyclotron resonance heating (ECRH) of radiatively improved (RI) mode discharges. With ECRH the energy content of RI-mode discharges can be increased without the normally observed power degradation in confinement time. The experiments are described and the effects of ECRH on global confinement and local plasma parameters of RI-mode discharges are discussed; the favourable scaling of energy content is due to a zone of low electron thermal transport just outside the sawtooth inversion radius. Moreover, the heating effect of ECRH in the RI-mode is compared with the effect in L-mode; this comparison sheds some light on the physics of electron thermal transport in RI-mode discharges.

  16. 33 CFR 167.100 - In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: General.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... Bay, RI, and Buzzards Bay, MA: General. 167.100 Section 167.100 Navigation and Navigable Waters COAST... approaches to Narragansett Bay, RI, and Buzzards Bay, MA: General. The traffic separation scheme in the approaches to Narragansett Bay, RI, and Buzzards Bay, MA, consists of four parts: Two precautionary areas...

  17. Remedial Investigation/Feasibility Study (RI/FS) process, elements and techniques guidance

    SciTech Connect

    Not Available

    1993-12-01

    This manual provides detailed guidance on Remedial Investigation/Feasibility Studies (RI/FSs) conducted pursuant to the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) at Department of Energy (DOE) facilities. The purpose of the RI/FS, to assess the risk posed by a hazardous waste site and to determine the best way to reduce that risk, and its structure (site characterization, risk assessment, screening and detailed analysis of alternatives, etc.) is defined in the National Oil and Hazardous Substances Pollution Contingency Plan (NCP) and further explained in the Environmental Protection Agency`s (EPA`s) Guidance for Conducting Remedial Investigations and Feasibility Studies Under CERCLA (Interim Final) 540/G-89/004, OSWER Directive 9355.3-01, October 1988. Though issued in 1988, the EPA guidance remains an excellent source of information on the conduct and structure of an RI/FS. This document makes use of supplemental RI/FS-related guidance that EPA has developed since its initial document was issued in 1988, incorporates practical lessons learned in more than 12 years of experience in CERCLA hazardous site remediation, and drawing on those lessons, introduces the Streamlined Approach For Environmental Restoration (SAFER), developed by DOE as a way to proceed quickly and efficiently through the RI/FS process at DOE facilities. Thus as its title implies, this guidance is intended to describe in detail the process and component elements of an RI/FS, as well as techniques to manage the RI/FS effectively.

  18. On the sequences ri, si, ti ∈ ℤ related to extended Euclidean algorithm and continued fractions

    NASA Astrophysics Data System (ADS)

    Muhammad, Khairun Nisak; Kamarulhaili, Hailiza

    2016-06-01

    The extended Euclidean Algorithm is a practical technique used in many cryptographic applications, where it computes the sequences ri, si, ti ∈ ℤ that always satisfy ri = si a+ tib. The integer ri is the remainder in the ith sequences. The sequences si and ti arising from the extended Euclidean algorithm are equal, up to sign, to the convergents of the continued fraction expansion of a/b. The values of (ri, si, ti) satisfy various properties which are used to solve the shortest vector problem in representing point multiplications in elliptic curves cryptography, namely the GLV (Gallant, Lambert & Vanstone) integer decomposition method and the ISD (integer sub decomposition) method. This paper is to extend the proof for each of the existing properties on (ri, si, ti). We also generate new properties which are relevant to the sequences ri, si, ti ∈ ℤ. The concepts of Euclidean algorithm, extended Euclidean algorithm and continued fractions are intertwined and the properties related to these concepts are proved. These properties together with the existing properties of the sequence (ri, si, ti) are regarded as part and parcel of the building blocks of a new generation of an efficient cryptographic protocol.

  19. Optical observations of meteors in RI Nikolaev Astronomical Observatory

    NASA Astrophysics Data System (ADS)

    Shulga, Alexander; Sybiryakova, Yevgeniya; Kulichenko, Nikolay; Vovk, Vasyl

    2015-08-01

    Video observations of meteors at the RI NAO are conducted using meteor patrol, which includes 6 optical telescopes (4 lenses: f = 85 mm, f/1.8; 2 lenses: f = 100 mm, f/2.0) equipped with a TV CCD cameras WAT-902H2 (768×576, 8.6×8.3µ). The field of view of 4 telescopes is 3.2°×4.2° and 2.7°×3.6° for 2 telescopes. System doesn't have any intensifier. Each video system is contained in a hermetic capsule to prevent it from rain and other aggressive meteorological conditions. Cameras work in the interlace mode with rate 50 half-frames per second.During 2011-2014 4135 single station meteors were observed. The mean duration of observed meteor trajectories are in 0.05-0.6 s. Double station observation campaigns has been started in September 2013 and it is still working with baseline 11.8 km. During September 2013 - September 2014 total number of observed meteor trajectories was 1757. Number of double station meteors - 328. The mean accuracy of visible radiant determination is less than 0.5 arc sec, more than 80% of radiates have standard deviation less than 0.2 arc sec.

  20. Radiation protection system at the RIKEN RI beam factory.

    PubMed

    Uwamino, Y; Fujita, S; Sakamoto, H; Ito, S; Fukunishi, N; Yabutani, T; Yamano, T; Fukumura, A

    2005-01-01

    The RIKEN RI (radioactive isotope) Beam Factory is scheduled to commence operations in 2006, and its maximum energy will be 400 MeV u(-1) for ions lighter than Ar and 350 MeV u(-1) for uranium. The beam intensity will be 1 pmicroA (6 x 10(12) particles s(-1)) for any element at the goal. For the hands-on-maintenance and the rational shield thickness of the building, the beam loss must be controlled with several kinds of monitors. Three types of radiation monitors will be installed. The first one consists of a neutron dose equivalent monitor and an ionisation chamber, which are commercially available area monitors. The second one is a conventional hand-held dose equivalent monitor wherein the logarithmic signal is read by a programmable logic controller based on the radiation safety interlock system (HIS). The third one is a simple plastic scintillator called a beam loss monitor. All the monitors have threshold levels for alarm and beam stop, and HIS reads all these signals.

  1. CCD UBV(RI)C photometry of twenty open clusters

    NASA Astrophysics Data System (ADS)

    Oralhan, İnci Akkaya; Karataş, Yüksel; Schuster, William J.; Michel, Raúl; Chavarría, Carlos

    2015-01-01

    Fundamental astrophysical parameters have been derived for 20 open clusters (OCs) using CCD UBV(RI)C photometric data observed with the 84 cm telescope at the San Pedro Mártir National Astronomical Observatory, México. The interstellar reddenings, metallicities, distances, and ages have been compared to the literature values. Significant differences are usually due to the usage of diverse empirical calibrations and differing assumptions, such as concerning cluster metallicity, as well as distinct isochrones which correspond to differing element-abundance ratios, internal stellar physics, and photometric systems. Different interstellar reddenings, as well as varying reduction and cluster-membership techniques, are also responsible for these kinds of systematic differences and errors. The morphological ages, which are derived from the morphological indices (δV and δ1) in the CM diagrams, are in good agreement with the isochrone ages of 12 OCs, those with good red clump (RC) and red giant (RG) star candidates. No metal abundance gradient is detected for the range 6.82⩽RGC⩽15.37 kpc, nor any correlation between the cluster ages and metal abundances for these 20 OCs. Young, metal-poor OCs, observed here in the third Galactic quadrant, may be associated with stellar over-densities, such as that in Canis Major (Martin et al.) and the Monoceros Ring (Newberg et al.), or signatures of past accretion events, as discussed by Yong et al. and Carraro et al.

  2. FRET-based kinetic analysis of highly reactive heterochiral DNA toward EcoRI endonuclease.

    PubMed

    Urata, Hidehito; Tamaki, Chihiro; Matsuno, Miki; Wada, Shun-ichi; Akagi, Masao

    2009-12-11

    We found unusual reactivity of a heterochiral dodecadeoxynucleotide toward EcoRI that contains an unnatural l-nucleotide residue at the 3'-flanking site of the hexameric EcoRI recognition sequence. In this study, the kinetic parameters for the reaction were determined by means of a heterochiral molecular beacon that contains the EcoRI recognition sequence in the stem region and possesses the fluorescent and quenching dyes at the 5'- and 3'-termini, respectively. We found that the heterochiral molecular beacon showed large V(max) and small K(m) values compared to the corresponding homochiral one. This chiral modification is expected to induce a preferable conformational change for binding and catalysis by EcoRI.

  3. Nuclear Astrophysics and Structure Studies Using Low-energy RI Beams at CRIB

    SciTech Connect

    Yamaguchi, H.; Hashimoto, T.; Hayakawa, S.; Binh, D. N.; Kahl, D.; Kubono, S.

    2010-05-12

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo. Using the RI beams at CRIB, Many measurements on proton and alpha resonance scatterings, (alpha,p) reactions, and others were peformed in recent years, mainly for studying astrophysical reactions and exotic nuclear structure. Among them, the results on the {sup 7}Be+p and {sup 7}Li+alpha resonance scatterings are presented.

  4. Experimental studies using a low-energy RI beam separator at CNS

    NASA Astrophysics Data System (ADS)

    Teranishi, T.; Kubono, S.; Shimoura, S.; Notani, M.; Yanagisawa, Y.; Michimasa, S.; Ue, K.; Iwasaki, H.; Kurokawa, M.; Satou, Y.; Morikawa, T.; Saito, A.; Baba, H.; Lee, J. H.; Lee, C. S.; Fülöp, Zs.; Kato, S.

    2003-05-01

    Radioactive-ion (RI) beams of 10C, 14O, 12N and 11C with energies low 10 A MeV were produced by using a low-energy in-flight RI beam separator newly constructed by CNS, University of Tokyo. Using the 12N and 11C beams, some resonance states were identified in the proton elastic scattering 12N+p and 11C+p, respectively.

  5. Nuclear Astrophysics and Structure Studies Using Low-energy RI Beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Hashimoto, T.; Hayakawa, S.; Binh, D. N.; Kahl, D.; Kubono, S.

    2010-05-01

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo. Using the RI beams at CRIB, Many measurements on proton and alpha resonance scatterings, (α,p) reactions, and others were peformed in recent years, mainly for studying astrophysical reactions and exotic nuclear structure. Among them, the results on the 7Be+p and 7Li+α resonance scatterings are presented.

  6. Fast, accurate evaluation of exact exchange: The occ-RI-K algorithm

    SciTech Connect

    Manzer, Samuel; Horn, Paul R.; Mardirossian, Narbe; Head-Gordon, Martin

    2015-07-14

    Construction of the exact exchange matrix, K, is typically the rate-determining step in hybrid density functional theory, and therefore, new approaches with increased efficiency are highly desirable. We present a framework with potential for greatly improved efficiency by computing a compressed exchange matrix that yields the exact exchange energy, gradient, and direct inversion of the iterative subspace (DIIS) error vector. The compressed exchange matrix is constructed with one index in the compact molecular orbital basis and the other index in the full atomic orbital basis. To illustrate the advantages, we present a practical algorithm that uses this framework in conjunction with the resolution of the identity (RI) approximation. We demonstrate that convergence using this method, referred to hereafter as occupied orbital RI-K (occ-RI-K), in combination with the DIIS algorithm is well-behaved, that the accuracy of computed energetics is excellent (identical to conventional RI-K), and that significant speedups can be obtained over existing integral-direct and RI-K methods. For a 4400 basis function C{sub 68}H{sub 22} hydrogen-terminated graphene fragment, our algorithm yields a 14 × speedup over the conventional algorithm and a speedup of 3.3 × over RI-K.

  7. Fast, accurate evaluation of exact exchange: The occ-RI-K algorithm

    PubMed Central

    Manzer, Samuel; Horn, Paul R.; Mardirossian, Narbe; Head-Gordon, Martin

    2015-01-01

    Construction of the exact exchange matrix, K, is typically the rate-determining step in hybrid density functional theory, and therefore, new approaches with increased efficiency are highly desirable. We present a framework with potential for greatly improved efficiency by computing a compressed exchange matrix that yields the exact exchange energy, gradient, and direct inversion of the iterative subspace (DIIS) error vector. The compressed exchange matrix is constructed with one index in the compact molecular orbital basis and the other index in the full atomic orbital basis. To illustrate the advantages, we present a practical algorithm that uses this framework in conjunction with the resolution of the identity (RI) approximation. We demonstrate that convergence using this method, referred to hereafter as occupied orbital RI-K (occ-RI-K), in combination with the DIIS algorithm is well-behaved, that the accuracy of computed energetics is excellent (identical to conventional RI-K), and that significant speedups can be obtained over existing integral-direct and RI-K methods. For a 4400 basis function C68H22 hydrogen-terminated graphene fragment, our algorithm yields a 14 × speedup over the conventional algorithm and a speedup of 3.3 × over RI-K. PMID:26178096

  8. Planetary GIS and EuroPlanet-RI H2020

    NASA Astrophysics Data System (ADS)

    Rossi, A. P.; Cecconi, B.; Manaud, N.; Erard, S.; Marmo, C.

    2015-10-01

    Geographic Information System (GIS) practice and applications within Planetary Science became in the last decade a major component for studying solid surfaces of Solar System bodies [e.g. 1,2,3]: from earlier mainly Mars-focused efforts limited to few datasets, the availability of high-quality spatial data grew enormously and its accessibility is also enhanced by the use of OGC web standards. Higher-level, calibrated georeferenced datasets are the prime target for geologic and related thematic mapping [e.g. 4], although the communities potentially benefiting from a GIS-based approach are beyond and they include most closely Atmospheric science, as well as Magnetospheric and Plasma Physics, to quote only few. In the upcoming EuroPlanet-RI H2020 project Planetary GIS efforts are embedded within the VESPA activity [5] and they allow for a tight integration of OGC and VO-based tools and interfaces [6]. Nowadays GIS-based analyses are used for carrying out research tasks and systematic mapping on planetary bodies, but also for a wide range of analyses related [e.g. 7] to landing site selection, ranging from scientific merit to safety [e.g.8] Community building is a key part of VESPA [5], but also independently followed by other actors like ESA PSA [9]. Recently a workshop on Planetary GIS in broad sense and with particular reference to ESA data archives has been organized [10]. Such workshop has been strongly supported by ESA and the broad planetary community, both directly and through its official channel for Planetary Science archive science access and exploitation-related needs, the PSA User Group [11]. Its outcomes, also in terms of use case development, might be instrumental to VESPA GIS/VO future activities

  9. Corynebacterium parvum- and Mycobacterium bovis bacillus Calmette-Guerin-induced granuloma formation is inhibited in TNF receptor I (TNF-RI) knockout mice and by treatment with soluble TNF-RI.

    PubMed

    Senaldi, G; Yin, S; Shaklee, C L; Piguet, P F; Mak, T W; Ulich, T R

    1996-12-01

    The aim of this study was to examine the role of TNF receptor I (TNF-RI) in the pathogenesis of heat-killed Corynebacterium parvum- and live bacillus Calmette-Guerin (BCG)-induced granulomas. Granuloma formation was analyzed in TNF-RI knockout mice and after treatment with soluble TNF-RI (sTNF-RI). TNF-RI knockout mice injected with C. parvum or BCG developed fewer and smaller granulomas than wild-type control mice. Mice treated with sTNF-RI from days 7 to 13 after injection of C. parvum or BCG developed fewer and smaller granulomas than saline-treated control mice. Established granulomas regressed in rats treated with sTNF-RI from days 10 to 13 after injection of C. parvum. In conclusion, TNF signaling via TNF-RI contributes to the pathogenesis of C. parvum- and BCG-induced granulomas. sTNF-RI inhibits the development of granulomas and can cause the regression of established granulomas. PMID:8943410

  10. Endogenous IL-1 in cognitive function and anxiety: a study in IL-1RI-/- mice.

    PubMed

    Murray, Carol L; Obiang, Pauline; Bannerman, David; Cunningham, Colm

    2013-01-01

    Interleukin-1 (IL-1) is a key pro-inflammatory cytokine, produced predominantly by peripheral immune cells but also by glia and some neuronal populations within the brain. Its signalling is mediated via the binding of IL-1α or IL-1β to the interleukin-1 type one receptor (IL-1RI). IL-1 plays a key role in inflammation-induced sickness behaviour, resulting in depressed locomotor activity, decreased exploration, reduced food and water intake and acute cognitive deficits. Conversely, IL-1 has also been suggested to facilitate hippocampal-dependent learning and memory: IL-1RI(-/-) mice have been reported to show deficits on tasks of visuospatial learning and memory. We sought to investigate whether there is a generalised hippocampal deficit in IL-1RI(-/-) animals. Therefore, in the current study we compared wildtype (WT) mice to IL-1RI(-/-) mice using a variety of hippocampal-dependent learning and memory tasks, as well as tests of anxiety and locomotor activity. We found no difference in performance of the IL-1RI(-/-) mice compared to WT mice in a T-maze working memory task. In addition, the IL-1RI(-/-) mice showed normal learning in various spatial reference memory tasks including the Y-maze and Morris mater maze, although there was a subtle deficit in choice behaviour in a spatial discrimination, beacon watermaze task. IL-1RI(-/-) mice also showed normal memory for visuospatial context in the contextual fear conditioning paradigm. In the open field, IL-1RI(-/-) mice showed a significant increase in distance travelled and rearing behaviour compared to the WT mice and in the elevated plus-maze spent more time in the open arms than did the WT animals. The data suggest that, contrary to prior studies, IL-1RI(-/-) mice are not robustly impaired on hippocampal-dependent memory and learning but do display open field hyperactivity and decreased anxiety compared to WT mice. The results argue for a careful evaluation of the roles of endogenous IL-1 in hippocampal and limbic

  11. RI in central retinal artery as assessed by CDI does not correspond to retinal vascular resistance.

    PubMed

    Polska, E; Kircher, K; Ehrlich, P; Vecsei, P V; Schmetterer, L

    2001-04-01

    The aim of the present study was to investigate the association between ultrasound Doppler measurements of resistive index (RI) in the central retinal artery and retinal vascular resistance (R) assessed with laser Doppler velocimetry, vessel size measurement, and calculation of ocular perfusion pressure (PP) in healthy subjects. An increase in vascular resistance was induced by inhalation of 100% O(2). During hyperoxia no significant changes in PP were observed. Mean flow velocity in main retinal veins was reduced by -27.5 +/- 2.0%. The average decrease in diameter was -11.5 +/- 1.0%. R, which was calculated as the ratio of PP to flow rate, increased by 97.6 +/- 7.7%. RI increased as well, but the effect was much smaller (6.6 +/- 2.2%). In addition, a negative correlation was found between baseline values of R and RI (r = -0.83). During hyperoxia R and RI were not associated. In conclusion, our data indicate that RI as assessed with color Doppler imaging in the central retinal artery is not an adequate measure of R.

  12. Restoration of RI-beams from a projectile fragment separator by Laser Ionization gas Catcher-PALIS-

    SciTech Connect

    Sonoda, T.; Takamine, A.; Schury, P.; Yamazaki, Y.; Wada, M.; Okada, K.; Yoshida, A.; Kubo, T.; Matsuo, Y.; Furukawa, T.; Wakui, T.; Shinozuka, T.; Iimura, H.; Katayama, I.; Ohtani, S.; Wollnik, H.; Schuessler, H. A.; Kudryavtsev, Yu.; Van Duppen, P.; Huyse, M.

    2009-03-17

    A fragment separator at heavy ion accelerator facilities is a versatile instrument to provide wide variety of radioactive isotope (RI) beams. However, more than 99.99% of precious RI-ions are simply dumped in the slits or elsewhere in the fragment separator. A novel concept to restore such RI-ions for parasitic slow RI-beams is proposed. Installation of a laser ionization gas catcher in the vicinity of the first or second focal point of the fragment separator enables to collect dead isotopes in the slits. The design concept and expected performance are discussed.

  13. Nanodomains in Early and Later Phases of FcεRI Signaling

    PubMed Central

    Holowka, David; Baird, Barbara

    2014-01-01

    Our long term efforts to elucidate receptor-mediated signaling in immune cells, particularly transmembrane signaling initiated by the receptor (FcεRI) for immunoglobulin E (IgE) in mast cells, led us unavoidably to contemplate the role of the heterogeneous plasma membrane. Our early investigations with fluorescence microscopy revealed co-redistribution of certain lipids and signaling components with antigen-crosslinked IgE-FcεRI and pointed to participation of ordered membrane domains in the signaling process. With a focus on this function, we have worked along with others to develop diverse and increasingly sophisticated tools to analyze the complexity of membrane structure that facilitates regulation and targeting of signaling events. This essay describes how initial membrane interactions of clustered IgE-FcεRI lead to downstream cellular responses and how biochemical information integrated with nanoscale resolution spectroscopy and imaging is providing mechanistic insights at the level of molecular complexes. PMID:25658351

  14. RFI/RI work plan for the Road A Chemical Basin 904-111G

    SciTech Connect

    Kmetz, T.F.

    2000-03-07

    This Resource Conservation and Recovery Act (RCRA) Facility Investigation (RFI)/Remedial Investigation (RI) Work Plan has been prepared for the Road A Chemical Basin Operable Unit (RdACB OU) (904-111G). This unit is subject to the requirements of both RCRA and the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA). This Work Plan presents the initial evaluation of existing unit data, applicable background data, the regulatory framework for the unit investigation, and the evaluations and decisions made during the determination of the scope and objectives of the planned Remedial Investigation/Feasibility Study (RI/FS) activities.

  15. Alpha-induced reaction studies using low-energy RI beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Kahl, D.; Hu, J.; Kubono, S.; Hayakawa, S.; Hashimoto, T.

    2012-11-01

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo. Studies on proton and alpha resonance scatterings, (α, p) reactions, and other types of measurements (β-decay lifetimes etc.) have been performed using RI beams at CRIB, motivated by interests on astrophysical reactions and exotic nuclear structure. Among the studies at CRIB, the measurement of 7Li+α/7Be+α resonant scatterings are presented.

  16. Alpha-induced reaction studies using low-energy RI beams at CRIB

    SciTech Connect

    Yamaguchi, H.; Kahl, D.; Hu, J.; Kubono, S.; Hayakawa, S.; Hashimoto, T.

    2012-11-12

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo. Studies on proton and alpha resonance scatterings, ({alpha}, p) reactions, and other types of measurements ({beta}-decay lifetimes etc.) have been performed using RI beams at CRIB, motivated by interests on astrophysical reactions and exotic nuclear structure. Among the studies at CRIB, the measurement of {sup 7}Li+{alpha}/{sup 7}Be+{alpha} resonant scatterings are presented.

  17. Studies on Nuclear Astrophysics and Exotic Structure at the Low-Energy RI Beam Facility CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Kahl, D.; Hayakawa, S.; Sakaguchi, Y.; Nakao, T.; Wakabayashi, Y.; Hashimoto, T.; Teranishi, T.; Kubono, S.; Cherubini, S.; Mazzocco, M.; Signorini, C.; Gulino, M.; Di Pietro, A.; Figuera, P.; La Cognata, M.; Lattuada, M.; Spitaleri, C.; Torresi, D.; Lee, P. S.; Lee, C. S.; Komatsubara, T.; Iwasa, N.; Okoda, Y.; Pierroutsakou, D.; Parascandolo, C.; La Commara, M.; Strano, E.; Boiano, C.; Boiano, A.; Manea, C.; Sánchez-Benítez, A. M.; Miyatake, H.; Watanabe, Y. X.; Ishiyama, H.; Jeong, S. C.; Imai, N.; Hirayama, Y.; Kimura, S.; Mukai, M.; Kim, Y. H.; Lin, C. J.; Jia, H. M.; Yan, L.; Yang, Y. Y.; Kawabata, T.; Kwon, Y. K.; Binh, D. N.; Khiem, L. H.; Duy, N. N.

    Studies on nuclear astrophysics, resonant structure, and nuclear reaction are going on at CRIB (CNS Radioactive Ion Beam separator), a low-energy RI beam separator operated by Center for Nuclear Study (CNS), the University of Tokyo. Two major methods used at CRIB to study nuclear reactions of astrophysical relevance are the resonant scattering, and direct measurements of (α,p) reactions using a thick-gas target. Several experiments for decay measurements and reaction mechanism are also performed using low-energy RI beams at CRIB. Some of the results from recent experiments at CRIB are discussed.

  18. Nuclear clusters studied with alpha resonant scatterings using RI beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Kahl, D.; Nakao, T.; Wakabayashi, Y.; Hashimoto, T.; Hayakawa, S.; Kawabata, T.; Teranishi, T.; Kwon, Y. K.; Binh, D. N.; Khiem, L. H.; Duy, N. N.; Kubono, S.; Suhara, T.; Kanada-En'yo, Y.; Moon, J. Y.; Kim, A.; Iwasa, N.; Lee, P. S.; Chae, K. Y.; Cha, S. M.; Gwak, M. S.; Kim, D. H.; Milman, E.

    2014-12-01

    Alpha resonant scattering is a simple and promising method to study α-cluster structure in nuclei. It has several good features which enable us to perform measurements with short-lived and relatively low-intense RI beams. Several measurements on alpha resonant scattering have been carried out at CRIB (CNS Radioactive Ion Beam separator), which is a low-energy RI beam separator at Center for Nuclear Study (CNS) of the University of Tokyo. Recent α resonant scattering studies at CRIB, using 7Li, 7Be and 10Be beams with a helium gas target, are discussed.

  19. DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.

    PubMed

    Blin, Kai; Dieterich, Christoph; Wurmus, Ricardo; Rajewsky, Nikolaus; Landthaler, Markus; Akalin, Altuna

    2015-01-01

    The expression of almost all genes in animals is subject to post-transcriptional regulation by RNA binding proteins (RBPs) and microRNAs (miRNAs). The interactions between both RBPs and miRNAs with mRNA can be mapped on a whole-transcriptome level using experimental and computational techniques established in the past years. The combined action of RBPs and miRNAs is thought to form a post-transcriptional regulatory code. Here we present doRiNA 2.0, available at http://dorina.mdc-berlin.de. In this highly improved new version, we have completely reworked the user interface and expanded the database to improve the usability of the website. Taking into account user feedback over the past years, the input forms for both the simple and the combinatorial search function have been streamlined and combined into a single web page that will also display the search results. Especially, custom uploads is one of the key new features in doRiNA 2.0. To enable the inclusion of doRiNA into third-party analysis pipelines, all operations are accessible via a REST API. Alternatively, local installations can be queried using a Python API. Both the web application and the APIs are available under an OSI-approved Open Source license that allows research and commercial access and re-use.

  20. 78 FR 52580 - Submission for Review: Request for Case Review for Enhanced Disability Annuity Benefit, RI 20-123

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-23

    ... MANAGEMENT Submission for Review: Request for Case Review for Enhanced Disability Annuity Benefit, RI 20-123...-123. As required by the Paperwork Reduction Act of 1995, (Pub. L. 104-13, 44 U.S.C. chapter 35) as... email to Cyrus.Benson@opm.gov or faxed to (202) 606- 0910. SUPPLEMENTARY INFORMATION: RI 20-123...

  1. 76 FR 22938 - Submission for Review: RI 25-37, Evidence To Prove Dependency of a Child

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-25

    ... MANAGEMENT Submission for Review: RI 25-37, Evidence To Prove Dependency of a Child AGENCY: U.S. Office of... to comment on a revised information collection request (ICR) 3206-0206, Evidence to Prove Dependency....Benson@opm.gov or faxed to (202) 606-0910. SUPPLEMENTARY INFORMATION: RI 25-37, Evidence to...

  2. 76 FR 29805 - Submission for Review: Verification of Full-Time School Attendance, RI 25-49

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-23

    ... MANAGEMENT Submission for Review: Verification of Full-Time School Attendance, RI 25-49 AGENCY: U.S. Office... opportunity to comment on a revised information collection request (ICR) 3206-0215, Verification of Full-Time...@opm.gov or faxed to (202) 606-0910. SUPPLEMENTARY INFORMATION: RI 25-49, Verification of...

  3. 33 CFR 167.102 - In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Narragansett Bay approach.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 2 2011-07-01 2011-07-01 false In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Narragansett Bay approach. 167.102 Section 167.102 Navigation and....102 In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Narragansett Bay approach. (a)...

  4. 33 CFR 167.101 - In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Precautionary areas.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 2 2011-07-01 2011-07-01 false In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Precautionary areas. 167.101 Section 167.101 Navigation and Navigable... the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Precautionary areas. (a) A...

  5. 78 FR 55121 - Submission for Review: Self-Certification of Full-Time School Attendance for the School Year, RI...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-09

    ... MANAGEMENT Submission for Review: Self-Certification of Full-Time School Attendance for the School Year, RI 25-14 and Information; and Instructions for Completing the Self-Certification of Full-Time School Attendance for the School Year, RI 25-14A AGENCY: U.S. Office of Personnel Management. ACTION: 60-Day...

  6. 77 FR 71200 - Submission for Review: 3206-0140, Representative Payee Application (RI 20-7) and Information...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-29

    ... MANAGEMENT Submission for Review: 3206-0140, Representative Payee Application (RI 20-7) and Information Necessary for a Competency Determination (RI 30-3) AGENCY: U.S. Office of Personnel Management. ACTION: 60-Day notice and request for comments. SUMMARY: The Retirement Services, Office of Personnel...

  7. 76 FR 18811 - Submission for Review: Letter Reply To Request for Information (RI 20-64), Former Spouse Survivor...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-05

    ... collection was previously published in the Federal Register on November 18, 2010 at Volume 75 FR 70710... Annuity Election (RI 20-64A), Information on Electing a Survivor Annuity for Your Former Spouse (RI 20-64B... on Electing a Survivor Annuity for Your Former Spouse, is a pamphlet that provides...

  8. 78 FR 55123 - Submission for Review: We Need Information About Your Missing Payment, RI 38-31

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-09

    ... MANAGEMENT Submission for Review: We Need Information About Your Missing Payment, RI 38-31 AGENCY: U.S... (ICR) 3206-0187, We Need Information About Your Missing Payment, RI 38-31. As required by the Paperwork... Services, Office of Personnel Management. Title: We Need Information About Your Missing Payment. OMB:...

  9. Mutants of the EcoRI endonuclease with promiscuous substrate specificity implicate residues involved in substrate recognition.

    PubMed Central

    Heitman, J; Model, P

    1990-01-01

    The EcoRI restriction endonuclease cleaves DNA molecules at the sequence GAATTC. We devised a genetic screen to isolate EcoRI mutants with altered or broadened substrate specificity. In vitro, the purified mutant enzymes cleave both the wild-type substrate and sites which differ from this by one nucleotide (EcoRI star sites). These mutations identify four residues involved in substrate recognition and catalysis that are different from the amino acids proposed to recognize the substrate based on the EcoRI-DNA co-crystal structure. In fact, these mutations suppress EcoRI mutants altered at some of the proposed substrate binding residues (R145, R200). We argue that these mutations permit cleavage of additional DNA sequences either by perturbing or removing direct DNA-protein interactions or by facilitating conformational changes that allosterically couple substrate binding to DNA scission. Images Fig. 2. Fig. 3. Fig. 4. Fig. 5. PMID:2209548

  10. Tetraspanin CD151 Is a Negative Regulator of FcεRI-Mediated Mast Cell Activation

    PubMed Central

    Abdala-Valencia, Hiam; Bryce, Paul J.; Schleimer, Robert P.; Wechsler, Joshua B.; Loffredo, Lucas F.; Cook-Mills, Joan M.; Hsu, Chia-Lin; Berdnikovs, Sergejs

    2016-01-01

    Mast cells are critical in the pathogenesis of allergic disease due to the release of preformed and newly synthesized mediators, yet the mechanisms controlling mast cell activation are not well understood. Members of the tetraspanin family are recently emerging as modulators of FcεRI-mediated mast cell activation; however, mechanistic understanding of their function is currently lacking. The tetraspanin CD151 is a poorly understood member of this family and is specifically induced on mouse and human mast cells upon FcεRI aggregation but its functional effects are unknown. In this study, we show that CD151 deficiency significantly exacerbates the IgE-mediated late phase inflammation in a murine model of passive cutaneous anaphylaxis. Ex vivo, FcεRI stimulation of bone marrow–derived mast cells from CD151−/− mice resulted in significantly enhanced expression of proinflammatory cytokines IL-4, IL-13, and TNF-α compared with wild-type controls. However, FcεRI -induced mast cell degranulation was unaffected. At the molecular signaling level, CD151 selectively regulated IgE-induced activation of ERK1/2 and PI3K, associated with cytokine production, but had no effect on the phospholipase Cγ1 signaling, associated with degranulation. Collectively, our data indicate that CD151 exerts negative regulation over IgE-induced late phase responses and cytokine production in mast cells. PMID:26136426

  11. 75 FR 47881 - Noise Exposure Map Notice, T.F.Green Airport, Warwick, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-08-09

    ... Federal Aviation Administration Noise Exposure Map Notice, T.F.Green Airport, Warwick, RI AGENCY: Federal... its determination that the noise exposure maps for T.F.Green Airport as submitted by the Rhode Island... INFORMATION: This notice announces that the FAA finds that the noise exposure maps submitted for...

  12. 76 FR 57910 - Regulated Navigation Area; Route 24 Bridge Construction, Tiverton and Portsmouth, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-19

    ..., 2008, issue of the Federal Register (73 FR 3316). Public Meeting We do not now plan to hold a public... and increase its cost to the public. For engineering reasons, to allow the lifting of huge steel... during optimal weather conditions that were deemed by RI DOT as an engineering necessity. Because of...

  13. 78 FR 4172 - Submission for Review: RI 25-15, Notice of Change in Student's Status

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-18

    ... MANAGEMENT Submission for Review: RI 25-15, Notice of Change in Student's Status AGENCY: U.S. Office of... to comment on a revised information collection request (ICR) 3206-0042, Notice of Change in Student's... information collection was previously published in the Federal Register on August 15, 2012 at Volume 77...

  14. 77 FR 49028 - Submission for Review: Notice of Change in Student's Status, RI25-15

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-15

    ... MANAGEMENT Submission for Review: Notice of Change in Student's Status, RI25-15 AGENCY: U.S. Office of... to comment on a revised information collection request (ICR) 3206-0042, Notice of Change in Student's... through the use of appropriate automated, electronic, mechanical, or other technological...

  15. 77 FR 28253 - Safety Zone; America's Cup World Series, East Passage, Narragansett Bay, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-14

    ... Series, East Passage, Narragansett Bay, RI'' in the Federal Register (77 FR 7025). We received one... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; America's Cup World Series, East Passage... the America's Cup World Series (ACWS) sailing vessel racing event. DATES: This rule is effective...

  16. 77 FR 49029 - Submission for Review: Annuity Supplement Earnings Report, RI 92-22

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-15

    ... MANAGEMENT Submission for Review: Annuity Supplement Earnings Report, RI 92- 22 AGENCY: U.S. Office of Personnel Management. ACTION: 60-Day Notice and request for comments. SUMMARY: The Retirement Services, Office of Personnel Management (OPM) offers the general public and other federal agencies the...

  17. 76 FR 18812 - Submission for Review: RI 30-10, Disabled Dependent Questionnaire

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-05

    ... the medical condition and earning capacity for the Office of Personnel Management to be able to... MANAGEMENT Submission for Review: RI 30-10, Disabled Dependent Questionnaire AGENCY: U.S. Office of Personnel Management. ACTION: 60-day notice and request for comments. SUMMARY: The Retirement Services, Office...

  18. Genotypic Variability of Soybean Response to Agrobacterium Strains Harboring the Ti or Ri Plasmids

    PubMed Central

    Owens, Lowell D.; Cress, Dean E.

    1985-01-01

    Twenty four diverse cultivars of soybean (Glycine max [L.] Merrill) and three lines of its annual wild progenitor Glycine soja Sieb and Zucc. were tested for their response to Agrobacterium strains harboring either the Ti (tumor-inducing) plasmid (pTi) from Agrobacterium tumefaciens or the Ri (root-inducing) plasmid (pRi) from Agrobacterium rhizogenes following uniform wounding and inoculation. Based upon gall weight at 8 weeks postinfection, three G. max cultivars (Biloxi, Jupiter, and Peking) and one G. soja line, Plant Introduction (PI) 398.693B, were judged highly susceptible to A. tumefaciens strain A348 (pTiA6), ten genotypes moderately susceptible, 11 weakly susceptible, and two nonsusceptible. Of 26 genotypes inoculated with strain R1000 (pRiA4b), only seven responded in a clearly susceptible fashion by forming small, fleshy roots at internodal infection sites. Cotyledons excised from 1- or 3-day old seedlings of Peking and Biloxi cultivars also formed galls when infected in vitro with agrobacteria carrying either the Ti or Ri plasmid. Tumor lines established from cotyledon and stem galls induced by A. tumefaciens A348 (pTiA6) exhibited the T-DNA borne traits of phytohormone-independent growth and octopine synthesis. Additionally, DNA isolated from cultured tumors hybridized with labeled T-DNA probe. Images Fig. 2 Fig. 3 Fig. 4 Fig. 5 Fig. 6 PMID:16664035

  19. 33 CFR 100.119 - Newport-Bermuda Regatta, Narragansett Bay, Newport, RI

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Newport-Bermuda Regatta, Narragansett Bay, Newport, RI 100.119 Section 100.119 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.119 Newport-Bermuda Regatta, Narragansett Bay, Newport,...

  20. 33 CFR 100.119 - Newport-Bermuda Regatta, Narragansett Bay, Newport, RI

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Newport-Bermuda Regatta, Narragansett Bay, Newport, RI 100.119 Section 100.119 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.119...

  1. 33 CFR 100.119 - Newport-Bermuda Regatta, Narragansett Bay, Newport, RI

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Newport-Bermuda Regatta, Narragansett Bay, Newport, RI 100.119 Section 100.119 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.119...

  2. RiBOMS: RFID-based object management system for home environments.

    PubMed

    Iraola, Hodei; Schafer, James; Yu, Xunyi; Mullett, Gary; Ganz, Aura

    2011-01-01

    In this paper we introduce a RFID-based object management system, RiBOMS, for home environments. The system has an easy to use pictorial user interface aimed at older adults with associative memory impairments. The system technical correctness was successfully tested in a lab environment. PMID:22254778

  3. 77 FR 39395 - Special Local Regulations; Ocean State Tall Ships Festival 2012, Narragansett Bay, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-03

    ... ability to proceed in a single file behind numerous other spectator craft viewing the moored Tall Ships... Homeland Security FR Federal Register LLNR Light List Number NEPA National Environmental Policy Act NPRM... Festival 2012, Narragansett Bay, RI'' in the Federal Register (77 FR 16974). We received no comments on...

  4. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  5. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  6. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  7. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  8. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  9. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  10. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  11. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  12. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  13. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  14. Cirsium semzinanicum (Asteraceae), a new species from Hakkâri, Turkey

    PubMed Central

    Fırat, Mehmet

    2016-01-01

    Abstract Cirsium semzinanicum sp. nov. (Asteraceae) is described as a new species from Hakkâri, Turkey. The new species is a part of the sect. Epitrachys (Cardueae) and similar to Cirsium karduchorum, from which it differs in morphological characters such as leaves, involucre, phyllaries, corolla, achens and pollen morphology. Geographical distribution, habitat and IUCN conservation status of this species are given.

  15. Instantánea del cáncer de riñón

    Cancer.gov

    Información sobre las tendencias de incidencia, mortalidad y financiamiento del NCI sobre el cáncer de riñón; así como ejemplos de actividades del NCI y adelantos en la investigación de este tipo de cáncer.

  16. Assessing the Kha Ri Gude Mass Literacy Campaign: A Developmental Evaluation

    ERIC Educational Resources Information Center

    Romm, Norma R. A.; Dichaba, Mpho M.

    2015-01-01

    In this article we explicate our way of assessing the South African Kha Ri Gude Mass Literacy Campaign, and in particular its impact in the Eastern Cape. We provide an account primarily of focus group sessions conducted in 2013 and again in 2014 with volunteer educators and past learners in the campaign. We concentrate on the way in which…

  17. 33 CFR 100.119 - Newport-Bermuda Regatta, Narragansett Bay, Newport, RI

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... of Narragansett Bay, Newport, RI, within the following points (NAD 83): Latitude Longitude 41°27′51... will begin offshore and the following regulated area applies (NAD 83): Latitude Longitude 41°26′04″ N... operators of this regulation and other applicable laws. (c) Effective date. This section is in effect...

  18. 76 FR 36582 - Submission for Review: Disabled Dependent Questionnaire, RI 30-10

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-22

    ... collection was previously published in the Federal Register on April 5, 2011 at Volume 76 FR 18812 allowing... MANAGEMENT Submission for Review: Disabled Dependent Questionnaire, RI 30-10 AGENCY: U.S. Office of Personnel... on an existing information collection request (ICR) 3206-0179, Disabled Dependent Questionnaire....

  19. 33 CFR 100.112 - Swim the Bay, Narragansett Bay, Narragansett, RI.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Swim the Bay, Narragansett Bay, Narragansett, RI. 100.112 Section 100.112 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.112 Swim the...

  20. 76 FR 15246 - Anchorage Regulations; Narragansett Bay and Rhode Island Sound, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-21

    ... regarding our public dockets in the January 17, 2008 issue of the Federal Register (73 FR 3316). Public... Sound, RI AGENCY: Coast Guard, DHS. ACTION: Notice of proposed rulemaking. SUMMARY: The Coast Guard... an offshore anchorage in Rhode Island Sound south of Brenton Point, Rhode Island, for use by...

  1. 33 CFR 100.112 - Swim the Bay, Narragansett Bay, Narragansett, RI.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Swim the Bay, Narragansett Bay, Narragansett, RI. 100.112 Section 100.112 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.112 Swim the...

  2. Sugar exchanges in arbuscular mycorrhiza: RiMST5 and RiMST6, two novel Rhizophagus irregularis monosaccharide transporters, are involved in both sugar uptake from the soil and from the plant partner.

    PubMed

    Ait Lahmidi, Nassima; Courty, Pierre-Emmanuel; Brulé, Daphnée; Chatagnier, Odile; Arnould, Christine; Doidy, Joan; Berta, Graziella; Lingua, Guido; Wipf, Daniel; Bonneau, Laurent

    2016-10-01

    Arbuscular mycorrhizal (AM) fungi are associated with about 80% of land plants. AM fungi provide inorganic nutrients to plants and in return up to 20% of the plant-fixed CO2 is transferred to the fungal symbionts. Since AM fungi are obligate biotrophs, unraveling how sugars are provided to the fungus partner is a key for understanding the functioning of the symbiosis. In this study, we identified two new monosaccharide transporters from Rhizophagus irregularis (RiMST5 and RiMST6) that we characterized as functional high affinity monosaccharide transporters. RiMST6 was characterized as a glucose specific, high affinity H(+) co-transporter. We provide experimental support for a primary role of both RiMST5 and RiMST6 in sugar uptake directly from the soil. The expression patterns of RiMSTs in response to partial light deprivation and to interaction with different host plants were investigated. Expression of genes coding for RiMSTs was transiently enhanced after 48 h of shading and was unambiguously dependent on the host plant species. These results cast doubt on the 'fair trade' principle under carbon-limiting conditions. Therefore, in light of these findings, the possible mechanisms involved in the modulation between mutualism and parasitism in plant-AM fungus interactions are discussed.

  3. Sugar exchanges in arbuscular mycorrhiza: RiMST5 and RiMST6, two novel Rhizophagus irregularis monosaccharide transporters, are involved in both sugar uptake from the soil and from the plant partner.

    PubMed

    Ait Lahmidi, Nassima; Courty, Pierre-Emmanuel; Brulé, Daphnée; Chatagnier, Odile; Arnould, Christine; Doidy, Joan; Berta, Graziella; Lingua, Guido; Wipf, Daniel; Bonneau, Laurent

    2016-10-01

    Arbuscular mycorrhizal (AM) fungi are associated with about 80% of land plants. AM fungi provide inorganic nutrients to plants and in return up to 20% of the plant-fixed CO2 is transferred to the fungal symbionts. Since AM fungi are obligate biotrophs, unraveling how sugars are provided to the fungus partner is a key for understanding the functioning of the symbiosis. In this study, we identified two new monosaccharide transporters from Rhizophagus irregularis (RiMST5 and RiMST6) that we characterized as functional high affinity monosaccharide transporters. RiMST6 was characterized as a glucose specific, high affinity H(+) co-transporter. We provide experimental support for a primary role of both RiMST5 and RiMST6 in sugar uptake directly from the soil. The expression patterns of RiMSTs in response to partial light deprivation and to interaction with different host plants were investigated. Expression of genes coding for RiMSTs was transiently enhanced after 48 h of shading and was unambiguously dependent on the host plant species. These results cast doubt on the 'fair trade' principle under carbon-limiting conditions. Therefore, in light of these findings, the possible mechanisms involved in the modulation between mutualism and parasitism in plant-AM fungus interactions are discussed. PMID:27362299

  4. The Transcription Factor Ehf Is Involved in TGF-β-Induced Suppression of FcεRI and c-Kit Expression and FcεRI-Mediated Activation in Mast Cells.

    PubMed

    Yamazaki, Susumu; Nakano, Nobuhiro; Honjo, Asuka; Hara, Mutsuko; Maeda, Keiko; Nishiyama, Chiharu; Kitaura, Jiro; Ohtsuka, Yoshikazu; Okumura, Ko; Ogawa, Hideoki; Shimizu, Toshiaki

    2015-10-01

    FcεRI, which is composed of α, β, and γ subunits, plays an important role in IgE-mediated allergic responses. TGF-β1 has been reported to suppress FcεRI and stem cell factor receptor c-Kit expression on mast cell surfaces and to suppress mast cell activation induced by cross-linking of FcεRI. However, the molecular mechanism by which these expressions and activation are suppressed by TGF-β1 remains unclear. In this study, we found that the expression of Ets homologous factor (Ehf), a member of the Ets family transcriptional factors, is upregulated by TGF-β/Smad signaling in mouse bone marrow-derived mast cells (BMMCs). Forced expression of Ehf in BMMCs repressed the transcription of genes encoding FcεRIα, FcεRIβ, and c-Kit, resulting in a reduction in cell surface FcεRI and c-Kit expression. Additionally, forced expression of Ehf suppressed FcεRI-mediated degranulation and cytokine production. Ehf inhibited the promoter activity of genes encoding FcεRIα, FcεRIβ, and c-Kit by binding to these gene promoters. Furthermore, the mRNA levels of Gata1, Gata2, and Stat5b were lower in BMMCs stably expressing Ehf compared with control cells. Because GATA-1 and GATA-2 are positive regulators of FcεRI and c-Kit expression, decreased expression of GATAs may be also involved in the reduction of FcεRI and c-Kit expression. Decreased expression of Stat5 may contribute to the suppression of cytokine production by BMMCs. In part, mast cell response to TGF-β1 was mimicked by forced expression of Ehf, suggesting that TGF-β1 suppresses FcεRI and c-Kit expression and suppresses FcεRI-mediated activation through upregulation of Ehf.

  5. Construction of an EcoRI restriction map of Mycoplasma pneumoniae and localization of selected genes.

    PubMed Central

    Wenzel, R; Pirkl, E; Herrmann, R

    1992-01-01

    A restriction map of the genome of Mycoplasma pneumoniae, a small human pathogenic bacterium, was constructed by means of an ordered cosmid library which spans the complete bacterial chromosome. The positions of 143 endonuclease EcoRI restriction fragments were determined and aligned with the physical map. In addition, restriction sites for the rare-cutting enzymes XhoI (25 sites), ApaI (13 sites), NotI (2 sites), and SfiI (2 sites) were included. The resulting map consists of 185 restriction sites, has a mean resolution of 4.4 kbp, and predicts a genome size of 809 kbp. In addition, several genes were identified and mapped to their respective genomic EcoRI restriction fragments. Images PMID:1429453

  6. Nuclear Astrophysical studies using low-energy RI beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Wakabayashi, Y.; Hayakawa, S.; Binh, D. N.; Kahl, D.; Kurihara, Y.; Kubono, S.; Teranishi, T.; He, J. J.; Kwon, Y. K.; Nishimura, S.; Togano, Y.; Iwasa, N.; Niikura, M.; Khiem, L. H.

    2009-05-01

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo, used for various studies covering nuclear-astrophysical topics. An application of the RI beam at CRIB for the astrophysical studies is a new measurement of the proton resonance scattering on 7Be. The measurement was performed up to the excitation energy of 6.8 MeV, ans the excitation function above 3.5 MeV was successfully measured for the first time, providing important information about the reaction rate of 7Be(p,γ)8B, which is the key reaction in the solar 8B neutrino production. A preliminary result of the 7Be+p experiment is presented.

  7. Cryogenic gas target system for intense RI beam productions in nuclear astrophysics

    SciTech Connect

    Wakabayashi, Y.; Yamaguchi, H.; Hayakawa, S.; Kurihara, Y.; Amadio, G.; Fujikawa, H.; Kubono, S.; Binh, D. N.; He, J. J.; Kim, A.

    2008-05-21

    A cryogenic gas target system was newly developed to produce intense RI beams at the low-energy in-flight radio-isotope beam separator (CRIB) of the University of Tokyo. The main features of the cryogenic gas target system are the direct cooling of the target cell by a liquid N{sub 2} finger and the circulation of the target gas that goes through the liquid N{sub 2} tank. Hydrogen gas was cooled down to 85-90 K by liquid nitrogen and used as a secondary beam production target which has a thickness of 2.3 mg/cm{sup 2} at the gas pressure of 760 Torr. Intense RI beams, such as a {sup 7}Be beam of 2x10{sup 8} particles per second, were successfully produced using the target.

  8. Nuclear Astrophysical studies using low-energy RI beams at CRIB

    SciTech Connect

    Yamaguchi, H.; Wakabayashi, Y.; Hayakawa, S.; Binh, D. N.; Kahl, D.; Kurihara, Y.; Kubono, S.; Niikura, M.; Teranishi, T.; He, J. J.; Kwon, Y. K.; Nishimura, S.; Togano, Y.; Iwasa, N.; Khiem, L. H.

    2009-05-04

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo, used for various studies covering nuclear-astrophysical topics. An application of the RI beam at CRIB for the astrophysical studies is a new measurement of the proton resonance scattering on {sup 7}Be. The measurement was performed up to the excitation energy of 6.8 MeV, ans the excitation function above 3.5 MeV was successfully measured for the first time, providing important information about the reaction rate of {sup 7}Be(p,{gamma}){sup 8}B, which is the key reaction in the solar {sup 8}B neutrino production. A preliminary result of the {sup 7}Be+p experiment is presented.

  9. RiSA: A Science Festival for the Bilingual and Bicultural Rio Grande Valley

    NASA Astrophysics Data System (ADS)

    Key, Joey Shapiro; Torres, Cristina; Stone, Robert

    2014-03-01

    The Rio Grande Science and Arts (RiSA) Festival organized by the Center for Gravitational Wave Astronomy (CGWA) at the University of Texas at Brownsville (UTB) will use a wide variety of artforms to bring physics and science topics to the bilingual and bicultural population of the Rio Grande Valley of South Texas. The science and art faculty at UTB will partner with art and education professionals to create an annual community event celebrating science though art. Music, dance, poetry, and visual arts will headline the festival activities. Festival events and products will be produced in both English and Spanish to attract and inform the bilingual local community. The RiSA Festival is supported by the Science Festival Alliance and the Sloan Foundation. Supported by the Science Festival Alliance and the Sloan Foundation.

  10. Cirsium semzinanicum (Asteraceae), a new species from Hakkâri, Turkey

    PubMed Central

    Fırat, Mehmet

    2016-01-01

    Abstract Cirsium semzinanicum sp. nov. (Asteraceae) is described as a new species from Hakkâri, Turkey. The new species is a part of the sect. Epitrachys (Cardueae) and similar to Cirsium karduchorum, from which it differs in morphological characters such as leaves, involucre, phyllaries, corolla, achens and pollen morphology. Geographical distribution, habitat and IUCN conservation status of this species are given. PMID:27698575

  11. Nuclear Astrophysics Programs with Low-Energy RI Beams at CRIB

    SciTech Connect

    Kubono, S.; Binh, Dam N.; Hayakawa, S.; Hashimoto, T.; Kahl, D. M.; Yamaguchi, H.; Wakabayashi, Y.; Teranishi, T.; Iwasa, N.; Komatsubara, T.; Kato, S.; Khiem, Le H.

    2010-04-30

    Nuclear astrophysics activities with CNS RI beam separator (CRIB) are reported together with the present status of the CRIB facility which is supported by the AVF upgrade project for the total development of the low-energy RIB facility. The activities include direct and indirect measurements of stellar reactions especially relevant to explosive burning processes such as nova and supernovae. Some recent results are discussed together with a scope of the facility.

  12. Nuclear Astrophysics Programs with Low-Energy RI Beams at CRIB

    NASA Astrophysics Data System (ADS)

    Kubono, S.; Binh, Dam N.; Hayakawa, S.; Hashimoto, T.; Kahl, D. M.; Yamaguchi, H.; Wakabayashi, Y.; Teranishi, T.; Iwasa, N.; Komatsubara, T.; Kato, S.; Khiem, Le H.

    2010-04-01

    Nuclear astrophysics activities with CNS RI beam separator (CRIB) are reported together with the present status of the CRIB facility which is supported by the AVF upgrade project for the total development of the low-energy RIB facility. The activities include direct and indirect measurements of stellar reactions especially relevant to explosive burning processes such as nova and supernovae. Some recent results are discussed together with a scope of the facility.

  13. Characterization of highly and moderately repetitive 500 bp Eco RI fragments from Xenopus laevis DNA.

    PubMed Central

    Hummel, S; Meyerhof, W; Korge, E; Knöchel, W

    1984-01-01

    Three different types of repetitive Eco RI fragments, which comigrate within a visible band of approximately 500 bp at gel electrophoresis of Xenopus laevis DNA Eco RI digests have been cloned and sequenced. These sequences are designated as Repetitive Eco RI Monomers: REM 1, REM 2 and REM 3. The sequences contain direct repeats, inverted repeats and palindromic elements. Genomic organization of the most abundant sequence (REM 1; 0.4% of total DNA) is that of an interspersed sequence. REM 2 (0.08%) is partly organized as an interspersed element and partly found in tandem arrangement, whereas REM 3 (0.02%) represents the tandemly repeated monomeric unit of a satellite DNA. In situ hybridization has shown that REM 1 and REM 2 sequences are found on most chromosomes, REM 1 being preferentially located on specific chromosomal loci. REM 3 is located near the centromere region of only one chromosome pair (presumably number 1). Hybridization of Northern blots from RNAs of different developmental stages revealed that REM 1, REM 2 and REM 3 sequences are transcribed and that transcription is under developmental control. Images PMID:6330690

  14. Structure of D-AKAP2:PKA RI Complex: Insights into AKAP Specificity and Selectivity

    SciTech Connect

    Sarma, Ganapathy N.; Kinderman, Francis S.; Kim, Choel; von Daake, Sventja; Chen, Lirong; Wang, Bi-Cheng; Taylor, Susan S.

    2010-11-22

    A-kinase anchoring proteins (AKAPs) regulate cyclic AMP-dependent protein kinase (PKA) signaling in space and time. Dual-specific AKAP 2 (D-AKAP2) binds to the dimerization/docking (D/D) domain of both RI and RII regulatory subunits of PKA with high affinity. Here we have determined the structures of the RI{alpha} D/D domain alone and in complex with D-AKAP2. The D/D domain presents an extensive surface for binding through a well-formed N-terminal helix, and this surface restricts the diversity of AKAPs that can interact. The structures also underscore the importance of a redox-sensitive disulfide in affecting AKAP binding. An unexpected shift in the helical register of D-AKAP2 compared to the RII{alpha}:D-AKAP2 complex structure makes the mode of binding to RI{alpha} novel. Finally, the comparison allows us to deduce a molecular explanation for the sequence and spatial determinants of AKAP specificity.

  15. The Importance of Human FcγRI in Mediating Protection to Malaria

    PubMed Central

    de Koning-Ward, Tania F; Smith, Tim; Green, Judith; van Egmond, Marjolein; Leusen, Jeanette H. W; Lazarou, Maria; van de Winkel, Jan; Jones, Tarran S; Crabb, Brendan S; Holder, Anthony A; Pleass, Richard J

    2007-01-01

    The success of passive immunization suggests that antibody-based therapies will be effective at controlling malaria. We describe the development of fully human antibodies specific for Plasmodium falciparum by antibody repertoire cloning from phage display libraries generated from immune Gambian adults. Although these novel reagents bind with strong affinity to malaria parasites, it remains unclear if in vitro assays are predictive of functional immunity in humans, due to the lack of suitable animal models permissive for P. falciparum. A potentially useful solution described herein allows the antimalarial efficacy of human antibodies to be determined using rodent malaria parasites transgenic for P. falciparum antigens in mice also transgenic for human Fc-receptors. These human IgG1s cured animals of an otherwise lethal malaria infection, and protection was crucially dependent on human FcγRI. This important finding documents the capacity of FcγRI to mediate potent antimalaria immunity and supports the development of FcγRI-directed therapy for human malaria. PMID:17511516

  16. Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction

    PubMed Central

    Gobeill, Julien; Tbahriti, Imad; Ehrler, Frédéric; Mottaz, Anaïs; Veuthey, Anne-Lise; Ruch, Patrick

    2008-01-01

    Background This paper describes and evaluates a sentence selection engine that extracts a GeneRiF (Gene Reference into Functions) as defined in ENTREZ-Gene based on a MEDLINE record. Inputs for this task include both a gene and a pointer to a MEDLINE reference. In the suggested approach we merge two independent sentence extraction strategies. The first proposed strategy (LASt) uses argumentative features, inspired by discourse-analysis models. The second extraction scheme (GOEx) uses an automatic text categorizer to estimate the density of Gene Ontology categories in every sentence; thus providing a full ranking of all possible candidate GeneRiFs. A combination of the two approaches is proposed, which also aims at reducing the size of the selected segment by filtering out non-content bearing rhetorical phrases. Results Based on the TREC-2003 Genomics collection for GeneRiF identification, the LASt extraction strategy is already competitive (52.78%). When used in a combined approach, the extraction task clearly shows improvement, achieving a Dice score of over 57% (+10%). Conclusions Argumentative representation levels and conceptual density estimation using Gene Ontology contents appear complementary for functional annotation in proteomics. PMID:18426554

  17. Cellular trafficking of the IL-1RI-associated kinase-1 requires intact kinase activity

    SciTech Connect

    Boel, Gaby-Fleur . E-mail: boel@mail.dife.de; Jurrmann, Nadine; Brigelius-Flohe, Regina

    2005-06-24

    Upon stimulation of cells with interleukin-1 (IL-1) the IL-1 receptor type I (IL-1RI) associated kinase-1 (IRAK-1) transiently associates to and dissociates from the IL-1RI and thereafter translocates into the nucleus. Here we show that nuclear translocation of IRAK-1 depends on its kinase activity since translocation was not observed in EL-4 cells overexpressing a kinase negative IRAK-1 mutant (EL-4{sup IRAK-1-K239S}). IRAK-1 itself, an endogenous substrate with an apparent molecular weight of 24 kDa (p24), and exogenous substrates like histone and myelin basic protein are phosphorylated by nuclear located IRAK-1. Phosphorylation of p24 cannot be detected in EL-4{sup IRAK-1-K239S} cells. IL-1-dependent recruitment of IRAK-1 to the IL-1RI and subsequent phosphorylation of IRAK-1 is a prerequisite for nuclear translocation of IRAK-1. It is therefore concluded that intracellular localization of IRAK-1 depends on its kinase activity and that IRAK-1 may also function as a kinase in the nucleus as shown by a new putative endogenous substrate.

  18. Structural and Thermodymamic Basis for Enhanced DNA Binding by a Promiscuous Mutant EcoRI Endonuclease

    SciTech Connect

    Sapienza,P.; Rosenberg, J.; Jen-Jacobson, L.

    2007-01-01

    Promiscuous mutant EcoRI endonucleases bind to the canonical site GAATTC more tightly than does the wild-type endonuclease, yet cleave variant (EcoRI*) sites more rapidly than does wild-type. The crystal structure of the A138T promiscuous mutant homodimer in complex with a GAATTC site is nearly identical to that of the wild-type complex, except that the Thr138 side chains make packing interactions with bases in the 5'-flanking regions outside the recognition hexanucleotide while excluding two bound water molecules seen in the wild-type complex. Molecular dynamics simulations confirm exclusion of these waters. The structure and simulations suggest possible reasons why binding of the A138T protein to the GAATTC site has S more favorable and H less favorable than for wild-type endonuclease binding. The interactions of Thr138 with flanking bases may permit A138T, unlike wild-type enzyme, to form complexes with EcoRI* sites that structurally resemble the specific wild-type complex with GAATTC.

  19. Studying astrophysical reactions with low-energy RI beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Kahl, D.; Hayakawa, S.; Sakaguchi, Y.; Wakabayashi, Y.; Hashimoto, T.; Cherubini, S.; Gulino, M.; Spitaleri, C.; Rapisarda, G. G.; La Cognata, M.; Lamia, L.; Romano, S.; Kubono, S.; Iwasa, N.; Teranishi, T.; Kawabata, T.; Kwon, Y. K.; Binh, D. N.; Khiem, L. H.; Duy, N. N.; Kato, S.; Komatsubara, T.; Coc, A.; De Sereville, N.; Hammache, F.; Kiss, G.; Bishop, S.

    2016-05-01

    Studies on nuclear astrophysics, nuclear structure, and other interests have been performed using the radioactive-isotope (RI) beams at the low-energy RI beam separator CRIB, operated by Center for Nuclear Study (CNS), the University of Tokyo. A typical measurement performed at CRIB is the elastic resonant scattering with the inverse kinematics. One recent experiment was on the α resonant scattering with 7Li and 7Be beams. This study is related to the astrophysical 7Li/7Be(α,γ) reactions, important at hot p-p chain and νp-process in supernovae. There have also been measurements based on other experimental methods. The first THM measurement using an RI beam has been performed at CRIB, to study the 18F(p, α)15O reaction at astrophysical energies via the three body reaction 2H(18F, α15O)n. The 18F(p, α) 15O reaction rate is crucial to understand the 511-keV γ-ray production in nova explosion phenomena, and we successfully evaluated the reaction cross section at novae temperature and below experimentally for the first time.

  20. Some Challenges of an “Upside Down” Nitrogen Budget – Science and Management in Greenwich Bay, RI (USA)

    EPA Science Inventory

    When nutrients impact estuarine water quality, scientists and managers instinctively focus on quantifying and controlling land-based sources. However, in Greenwich Bay, RI, the estuary opens onto a larger and more intensively fertilized coastal water body (Narragansett Bay). Prev...

  1. Fluorogen-activating proteins provide tunable labeling densities for tracking FcεRI independent of IgE.

    PubMed

    Schwartz, Samantha L; Yan, Qi; Telmer, Cheryl A; Lidke, Keith A; Bruchez, Marcel P; Lidke, Diane S

    2015-02-20

    Crosslinking of IgE bound FcεRI on mast cells and basophils by multivalent antigen leads to degranulation and the release of key inflammatory mediators that stimulate the allergic response. Here, we present and characterize the use of fluorogen-activating proteins (FAPs) for single particle tracking of FcεRI to investigate how receptor mobility is influenced after IgE-induced changes in mast cell behavior. FAPs are genetically encoded tags that bind a fluorogen dye and increase its brightness upon binding up to 20,000-fold. We demonstrate that, by titrating fluorogen concentration, labeling densities from ensemble to single particle can be achieved, independent of expression level and without the need for wash steps or photobleaching. The FcεRI γ-subunit fused to a FAP (FAP-γ) provides, for the first time, an IgE-independent probe for tracking this signaling subunit of FcεRI at the single molecule level. We show that the FcεRI γ-subunit dynamics are controlled by the IgE-binding α-subunit and that the cytokinergic IgE, SPE-7, induces mast cell activation without altering FcεRI mobility or promoting internalization. We take advantage of the far-red emission of the malachite green (MG) fluorogen to track FcεRI relative to dynamin-GFP and find that immobilized receptors readily correlate with locations of dynamin recruitment only under conditions that promote rapid endocytosis. These studies demonstrate the usefulness of the FAP system for single molecule studies and have provided new insights into the relationship among FcεRI structure, activity, and mobility. PMID:25343439

  2. How to Reliably Determine the Complex Refractive Index (RI) of Graphene by Using Two Independent Measurement Constraints

    PubMed Central

    Cheon, Sosan; Kihm, Kenneth David; Kim, Hong goo; Lim, Gyumin; Park, Jae Sung; Lee, Joon Sik

    2014-01-01

    Reliable determination of the complex refractive index (RI) of graphene inherently requires two independent measurement realizations for two independent unknowns of the real (nG) and imaginary (kG) components, i.e., RI = nG + i kG. Thus, any single set of measurement realization provides only one constraint that is insufficient to uniquely determine the complex RI of graphene. Tandem uses of two independent measurement techniques, namely the surface plasmon resonance (SPR) angle detection and the attenuated total reflection (ATR) intensity measurement, allow for the unique determination of the complex RI of CVD-synthesized graphene. The presently measured graphene RI is determined to be 2.65 + 1.27i for the E-field oscillating parallel to graphene at 634 nm wavelength, with variations for different numbers of L (1, 3 and 5) remaining within ±3%. Thus, our demonstration results for the specified wavelength serve as an impetus to suggest the need for two independent measurement techniques in determining both the real and imaginary RI values for graphene. Additional efforts have been made to characterize graphene layers using the density function theory (DFT): this calculation provides RIG = 2.71 + 1.41i. PMID:25219628

  3. Asia Rice Crop Estimation and Monitoring (Asia-RiCE) for GEOGLAM

    NASA Astrophysics Data System (ADS)

    Oyoshi, K.; Tomiyama, N.; Okumura, T.; Sobue, S.

    2013-12-01

    Food security is a critical issue for the international community because of rapid population and economic growth, and climate change. In June 2011, the meeting of G20 agriculture ministers was held to discuss food security and food price volatility, and they agreed on an 'Action Plan on Food Price Volatility and Agriculture'. This plan includes a GEO Global Agricultural Monitoring (GEOGLAM) initiative. The aim of GEOGLAM is to reinforce the international community's ability to produce and disseminate relevant, timely, and accurate forecasts of agricultural production on regional, national, and global scales by utilizing remote sensing technology. GEOGLAM focused on four major grain crops, wheat, maize, soybeans and rice. In particular, Asian countries are responsible for approximately 90% of the world rice production and consumption, rice is the most significant cereal crop in Asian region. Hence, Asian space and agricultural agencies with an interest in the development of rice crop monitoring technology launched an Asia-Rice Crop Estimation & Monitoring (Asia-RiCE) component for the GEOGLAM initiative. In Asian region, rice is mainly cultivated in rainy season, and a large amount of cloud limits rice crop monitoring with optical sensors. But, Synthetic Aperture RADAR (SAR) is all-weather sensor and can observe land surface even if the area is covered by cloud. Therefore, SAR technology would be powerful tool to monitor rice crop in Asian region. Asia-RiCE team required mainly SAR observation data including ALOS-2, RISAT-1, Sentinel-1 and RADARSAT, TerraSAR-X, COSMO-SkyMed for Asia-RiCE GEOGLAM Phase 1 implementation (2013-2015) to the Committee on Earth Observations (CEOS) in the GEOGLAM-CEOS Global Agricultural Monitoring Co-community Meeting held in June 2013. And also, rice crop has complicated cropping systems such as rein-fed or irrigated cultivation, single, double or sometimes triple cropping. In addition, each agricultural field is smaller than that of

  4. Fyn kinase controls Fc{epsilon}RI receptor-operated calcium entry necessary for full degranulation in mast cells

    SciTech Connect

    Sanchez-Miranda, Elizabeth; Ibarra-Sanchez, Alfredo; Gonzalez-Espinosa, Claudia

    2010-01-22

    IgE-antigen-dependent crosslinking of the high affinity IgE receptor (Fc{epsilon}RI) on mast cells leads to degranulation, leukotriene synthesis and cytokine production. Calcium (Ca{sup 2+}) mobilization is a sine qua non requisite for degranulation, allowing the rapid secretion of stored pro-inflammatory mediators responsible for allergy symptoms. Fyn is a Src-family kinase that positively controls Fc{epsilon}RI-induced mast cell degranulation. However, our understanding of the mechanism connecting Fyn activation to secretion of pre-synthesized mediators is very limited. We analyzed Fc{epsilon}RI-dependent Ca{sup 2+} mobilization in bone marrow-derived mast cells (BMMCs) differentiated from WT and Fyn -/- knock out mice. Fyn -/- BMMCs showed a marked defect in extracellular Ca{sup 2+} influx after Fc{epsilon}RI crosslinking but not after thapsigargin addition. High concentrations of Gadolinium (Gd{sup 3+}) partially blocked Fc{epsilon}RI-induced Ca{sup 2+} influx in WT cells but, in contrast, completely inhibited Ca{sup 2+} mobilization in Fyn -/- cells. Low concentrations of an inhibitor of the canonical transient receptor potential (TRPC) Ca{sup 2+} channels (2-aminoethoxyphenyl-borane, 2-APB) blocked Fc{epsilon}RI-induced maximal Ca{sup 2+} rise in WT but not in Fyn -/- cells. Ca{sup 2+} entry through Fyn-controlled, 2-APB sensitive channels was found to be important for full degranulation and IL-2 mRNA accumulation in WT cells. Immunoprecipitation assays showed that Fyn kinase interacts with TRPC 3/6/7 channels after IgE-antigen stimulation, but its association is not related to protein tyrosine phosphorylation. Results indicate Fyn kinase mediates the receptor-dependent activation of TRPC channels that contribute to degranulation in Fc{epsilon}RI-stimulated mast cells.

  5. Transcriptome networks in the mouse retina: An exon level BXD RI database

    PubMed Central

    King, Rebecca; Lu, Lu; Williams, Robert W.

    2015-01-01

    Purpose Differences in gene expression provide diverse retina phenotypes and may also contribute to susceptibility to injury and disease. The present study defines the transcriptome of the retina in the BXD RI strain set, using the Affymetrix Mouse Gene 2.0 ST array to investigate all exons of traditional protein coding genes, non-coding RNAs, and microRNAs. These data are presented in a highly interactive database on the GeneNetwork website. Methods In the Normal Retina Database, the mRNA levels of the transcriptome from retinas was quantified using the Affymetrix Mouse Gene 2.0 ST array. This database consists of data from male and female mice. The data set includes a total of 52 BXD RI strains, the parental strains (C57BL/6J and DBA/2J), and a reciprocal cross. Results In combination with GeneNetwork, the Department of Defense (DoD) Congressionally Directed Medical Research Programs (CDMRP) Normal Retina Database provides a large resource for mapping, graphing, analyzing, and testing complex genetic networks. Protein-coding and non-coding RNAs can be used to map quantitative trait loci (QTLs) that contribute to expression differences among the BXD strains and to establish links between classical ocular phenotypes associated with differences in the genomic sequence. Using this resource, we extracted transcriptome signatures for retinal cells and defined genetic networks associated with the maintenance of the normal retina. Furthermore, we examined differentially expressed exons within a single gene. Conclusions The high level of variation in mRNA levels found among the BXD RI strains makes it possible to identify expression networks that underline differences in retina structure and function. Ultimately, we will use this database to define changes that occur following blast injury to the retina. PMID:26604663

  6. [Paraneoplastic limbic encephalitis with positive anti-RI antibodies and mediastinal seminoma].

    PubMed

    Launay, M; Bozzolo, E; Venissac, N; Delmont, E; Fredenrich, A; Thomas, P

    2008-01-01

    We report the case of a 49-year-old man who was admitted for progressive behaviorial disorders with frontal elements. There was no sensorial nor motor deficiency. Clinical examination revealed android obesity, cutaneous and mucous paleness, pubic and axillary depilation and gynecomastia. Encephalic MRI found a lesion of the left amygdalian region with high T2 intensity and low T1 intensity associated with gadolinium-enhancement. Cerebrospinal fluid analysis showed a lymphocytic meningitis. Panhypopituitarism was found on the endocrine investigations. Anti-RI antibodies were positive, leading to the diagnosis of paraneoplastic limbic encephalitis. The CT-scan showed a node of the lower part of the thymic area. Surgical resection revealed an ectopic mediastinal seminoma. The evolution consisted of paraneoplastic fever and crossed-syndrome with right hemiparesia and left common oculomotor nerve paralysis. Treatment was completed by two cycles of carboplatin, corticosteroids and substitutive opotherapy. Paraneoplastic fever disappeared, but behavioral disorders and palsy remain unchanged. The patient died two years later in a bedridden state. This case of paraneoplastic limbic encephalitis associated with positive anti-RI antibodies and mediastinal seminoma is exceptional and has not to our knowledge been described in the literature. Cancers usually associated with anti-RI antibody are breast and lung cancer. Paraneoplastic limbic encephalitis is not the classical clinical presentation, which usually is brainstem encephalitis. Hypothalamic involvement, uncommon in paraneoplastic limbic encephalitis is mainly associated with positive antineuronal anti-Ma2 antibodies. Finally, the gadolinium enhancement on encephalic MRI is unusual in paraneoplastic limbic encephalitis. PMID:18565362

  7. U BV RI PHOTOMETRIC STANDARD STARS AROUND THE SKY AT +50 deg DECLINATION

    SciTech Connect

    Landolt, Arlo U.

    2013-11-01

    U BV RI photoelectric observations have been made of 335 stars around the sky, and centered approximately at +50 deg declination. The majority of the stars fall in the magnitude range 9 < V < 16, and in the color range –0.3 < (B – V) < +1.8. Those 243 stars best suited as new broadband photometric standard stars average 12.5 measures each from data taken on 98 different nights over a period of 17 years at the Kitt Peak National and Lowell Observatories.

  8. Polymer nanocomposite films with extremely high nanoparticle loadings via capillary rise infiltration (CaRI)

    NASA Astrophysics Data System (ADS)

    Huang, Yun-Ru; Jiang, Yijie; Hor, Jyo Lyn; Gupta, Rohini; Zhang, Lei; Stebe, Kathleen J.; Feng, Gang; Turner, Kevin T.; Lee, Daeyeon

    2014-12-01

    Polymer nanocomposite films (PNCFs) with extremely high concentrations of nanoparticles are important components in energy storage and conversion devices and also find use as protective coatings in various applications. PNCFs with high loadings of nanoparticles, however, are difficult to prepare because of the poor processability of polymer-nanoparticle mixtures with high concentrations of nanoparticles even at an elevated temperature. This problem is exacerbated when anisotropic nanoparticles are the desired filler materials. Here we report a straightforward method for generating PNCFs with extremely high loadings of nanoparticles. Our method is based on what we call capillary rise infiltration (CaRI) of polymer into a dense packing of nanoparticles. CaRI consists of two simple steps: (1) the preparation of a two-layer film, consisting of a porous layer of nanoparticles and a layer of polymer and (2) annealing of the bilayer structure above the temperature that imparts mobility to the polymer (e.g., glass transition of the polymer). The second step leads to polymer infiltration into the interstices of the nanoparticle layer, reminiscent of the capillary rise of simple fluid into a narrow capillary or a packing of granules. We use in situ spectroscopic ellipsometry and a three-layer Cauchy model to follow the capillary rise of polystyrene into the random network of nanoparticles. The infiltration of polystyrene into a densely packed TiO2 nanoparticle layer is shown to follow the classical Lucas-Washburn type of behaviour. We also demonstrate that PNCFs with densely packed anisotropic TiO2 nanoparticles can be readily generated by spin coating anisotropic TiO2 nanoparticles atop a polystyrene film and subsequently thermally annealing the bilayer film. We show that CaRI leads to PNCFs with modulus, hardness and scratch resistance that are far superior to the properties of films of the component materials. In addition, CaRI fills in cracks that may exist in the

  9. A new EcoRI polymorphism at the D21S13 locus.

    PubMed

    Pulst, S M; Korenberg, J R; Greenwald, J; Carbone, M

    1990-05-01

    The D21S13 locus has shown linkage to a gene for familial Alzheimer disease (FAD) on chromosome 21 (St. George-Hyslop et al. 1987). The limited informativeness of probes for this locus have hindered precise mapping of the FAD locus and analysis of nonallelic heterogeneity in FAD (Schellenberg et al. 1988; St. George-Hyslop et al. 1987). We describe a new EcoRI polymorphism at the D21S13 locus that may be useful for the further study of FAD families.

  10. Involvement of Bruton's Tyrosine Kinase in FcεRI-dependent Mast Cell Degranulation and Cytokine Production

    PubMed Central

    Hata, Daisuke; Kawakami, Yuko; Inagaki, Naoki; Lantz, Chris S.; Kitamura, Toshio; Khan, Wasif N.; Maeda-Yamamoto, Mari; Miura, Toru; Han, Wei; Hartman, Stephen E.; Yao, Libo; Nagai, Hiroichi; Goldfeld, Anne E.; Alt, Frederick W.; Galli, Stephen J.; Witte, Owen N.; Kawakami, Toshiaki

    1998-01-01

    We investigated the role of Bruton's tyrosine kinase (Btk) in FcεRI-dependent activation of mouse mast cells, using xid and btk null mutant mice. Unlike B cell development, mast cell development is apparently normal in these btk mutant mice. However, mast cells derived from these mice exhibited significant abnormalities in FcεRI-dependent function. xid mice primed with anti-dinitrophenyl monoclonal IgE antibody exhibited mildly diminished early-phase and severely blunted late-phase anaphylactic reactions in response to antigen challenge in vivo. Consistent with this finding, cultured mast cells derived from the bone marrow cells of xid or btk null mice exhibited mild impairments in degranulation, and more profound defects in the production of several cytokines, upon FcεRI cross-linking. Moreover, the transcriptional activities of these cytokine genes were severely reduced in FcεRI-stimulated btk mutant mast cells. The specificity of these effects of btk mutations was confirmed by the improvement in the ability of btk mutant mast cells to degranulate and to secrete cytokines after the retroviral transfer of wild-type btk cDNA, but not of vector or kinase-dead btk cDNA. Retroviral transfer of Emt (= Itk/Tsk), Btk's closest relative, also partially improved the ability of btk mutant mast cells to secrete mediators. Taken together, these results demonstrate an important role for Btk in the full expression of FcεRI signal transduction in mast cells. PMID:9547335

  11. Barriers to Health Insurance Pre- and Post-Affordable Care Act Implementation in Providence, RI.

    PubMed

    Pigoga, Jennifer; Kibria, Farzana; Pinilla, Mauricio; Bicki, Alexandra; Joseph, Valerie; De Groot, Anne S

    2015-12-01

    The impact of healthcare reform under the Affordable Care Act (ACA) on individuals living in cities has not yet been quantified by local Departments of Health. This makes it difficult for safety net sources of healthcare, such as free clinics, to plan for the future. Therefore, members of Clinica Esperanza/Hope Clinic conducted a survey in predominantly Latino communities of South and West Providence, RI, using a convenience sample method (N = 206). Survey results were compared to a prior survey conducted in the same communities prior to ACA implementation. Despite gains due to Obamacare, a much higher level of uninsurance was reported in this survey than has been reported statewide. In 2014, as compared to 2010, 48% vs. 95% of respondents reported being uninsured, and more held private (20% vs. 5%) or government-subsidized health insurance (32% vs. 1%). Undocumented immigration status and cost were the two most commonly reported reasons for remaining uninsured under the ACA. First-generation immigrants living in urban centers are still reporting significantly higher rates of uninsurance (48%) than the general population in RI (7.4%). PMID:26623454

  12. Tim-3 enhances FcεRI-proximal signaling to modulate mast cell activation.

    PubMed

    Phong, Binh L; Avery, Lyndsay; Sumpter, Tina L; Gorman, Jacob V; Watkins, Simon C; Colgan, John D; Kane, Lawrence P

    2015-12-14

    T cell (or transmembrane) immunoglobulin and mucin domain protein 3 (Tim-3) has attracted significant attention as a novel immune checkpoint receptor (ICR) on chronically stimulated, often dysfunctional, T cells. Antibodies to Tim-3 can enhance antiviral and antitumor immune responses. Tim-3 is also constitutively expressed by mast cells, NK cells and specific subsets of macrophages and dendritic cells. There is ample evidence for a positive role for Tim-3 in these latter cell types, which is at odds with the model of Tim-3 as an inhibitory molecule on T cells. At this point, little is known about the molecular mechanisms by which Tim-3 regulates the function of T cells or other cell types. We have focused on defining the effects of Tim-3 ligation on mast cell activation, as these cells constitutively express Tim-3 and are activated through an ITAM-containing receptor for IgE (FcεRI), using signaling pathways analogous to those in T cells. Using a variety of gain- and loss-of-function approaches, we find that Tim-3 acts at a receptor-proximal point to enhance Lyn kinase-dependent signaling pathways that modulate both immediate-phase degranulation and late-phase cytokine production downstream of FcεRI ligation.

  13. Experimental Approach to High-Temperature Stellar Reactions with Low-Energy RI Beams

    NASA Astrophysics Data System (ADS)

    Kubono, S.; Yamaguchi, H.; Amadio, G.; Hayakawa, S.; Wakabayashi, Y.; Kurihara, Y.; He, J. J.; Saito, A.; Fujikawa, H.; Khiem, Le Hong; Niikura, M.; Teranishi, T.; Nishimura, S.; Kato, S.; Lee, C. S.; Kwon, Y. K.; Hahn, I. S.; Kim, A.

    2008-04-01

    The experimental efforts for the stellar reactions under high-temperature and high densities have been made as the major program using the RI beams from the CNS low-energy in-flight RI beam separator (CRIB) of University of Tokyo, in order to understand the evolution of the universe as well as various stellar phenomena. Specifically, two subjects of hydrogen burning are discussed here. One is a reaction study of the pp-chain and the second is of the explosive hydrogen burning, the rp-process. Some s-wave resonances have been identified by the thick target method in the crucial reaction processes in the hydrogen burning. The resonant scattering with the thick target method also succeeded in identifying inelastic resonant scattering, giving proton widths for the first excited state of the target nucleus. This provides very efficiently the reaction rate estimate for the process under high-temperature equilibrium condition. Possibilities of the CRIB facility in near future are also briefly discussed.

  14. Structure of the DNA-Eco RI endonuclease recognition complex at 3 A resolution.

    PubMed

    McClarin, J A; Frederick, C A; Wang, B C; Greene, P; Boyer, H W; Grable, J; Rosenberg, J M

    1986-12-19

    The crystal structure of the complex between Eco RI endonuclease and the cognate oligonucleotide TCGCGAATTCGCG provides a detailed example of the structural basis of sequence-specific DNA-protein interactions. The structure was determined, to 3 A resolution, by the ISIR (iterative single isomorphous replacement) method with a platinum isomorphous derivative. The complex has twofold symmetry. Each subunit of the endonuclease is organized into an alpha/beta domain consisting a five-stranded beta sheet, alpha helices, and an extension, called the "arm," which wraps around the DNA. The large beta sheet consists of antiparallel and parallel motifs that form the foundations for the loops and alpha helices responsible for DNA strand scission and sequence-specific recognition, respectively. The DNA cleavage site is located in a cleft that binds the DNA backbone in the vicinity of the scissile bond. Sequence specificity is mediated by 12 hydrogen bonds originating from alpha helical recognition modules. Arg200 forms two hydrogen bonds with guanine while Glu144 and Arg145 form four hydrogen bonds to adjacent adenine residues. These interactions discriminate the Eco RI hexanucleotide GAATTC from all other hexanucleotides because any base substitution would require rupture of at least one of these hydrogen bonds.

  15. Differences between EcoRI nonspecific and "star" sequence complexes revealed by osmotic stress.

    PubMed

    Sidorova, Nina Y; Rau, Donald C

    2004-10-01

    The binding of the restriction endonuclease EcoRI to DNA is exceptionally specific. Even a single basepair change ("star" sequence) from the recognition sequence, GAATTC, decreases the binding free energy of EcoRI to values nearly indistinguishable from nonspecific binding. The difference in the number of waters sequestered by the protein-DNA complexes of the "star" sequences TAATTC and CAATTC and by the specific sequence complex determined from the dependence of binding free energy on water activity is also practically indistinguishable at low osmotic pressures from the 110 water molecules sequestered by nonspecific sequence complexes. Novel measurements of the dissociation rates of noncognate sequence complexes and competition equilibrium show that sequestered water can be removed from "star" sequence complexes by high osmotic pressure, but not from a nonspecific complex. By 5 Osm, the TAATTC "star" sequence complex has lost almost 90 of the approximately 110 waters initially present. It is more difficult to remove water from the CAATTC "star" sequence complex. The sequence dependence of water loss correlates with the known sequence dependence of "star" cleavage activity.

  16. Tim-3 enhances FcεRI-proximal signaling to modulate mast cell activation

    PubMed Central

    Phong, Binh L.; Avery, Lyndsay; Sumpter, Tina L.; Gorman, Jacob V.; Watkins, Simon C.; Colgan, John D.

    2015-01-01

    T cell (or transmembrane) immunoglobulin and mucin domain protein 3 (Tim-3) has attracted significant attention as a novel immune checkpoint receptor (ICR) on chronically stimulated, often dysfunctional, T cells. Antibodies to Tim-3 can enhance antiviral and antitumor immune responses. Tim-3 is also constitutively expressed by mast cells, NK cells and specific subsets of macrophages and dendritic cells. There is ample evidence for a positive role for Tim-3 in these latter cell types, which is at odds with the model of Tim-3 as an inhibitory molecule on T cells. At this point, little is known about the molecular mechanisms by which Tim-3 regulates the function of T cells or other cell types. We have focused on defining the effects of Tim-3 ligation on mast cell activation, as these cells constitutively express Tim-3 and are activated through an ITAM-containing receptor for IgE (FcεRI), using signaling pathways analogous to those in T cells. Using a variety of gain- and loss-of-function approaches, we find that Tim-3 acts at a receptor-proximal point to enhance Lyn kinase-dependent signaling pathways that modulate both immediate-phase degranulation and late-phase cytokine production downstream of FcεRI ligation. PMID:26598760

  17. An Interaction Library for the FcεRI Signaling Network.

    PubMed

    Chylek, Lily A; Holowka, David A; Baird, Barbara A; Hlavacek, William S

    2014-01-01

    Antigen receptors play a central role in adaptive immune responses. Although the molecular networks associated with these receptors have been extensively studied, we currently lack a systems-level understanding of how combinations of non-covalent interactions and post-translational modifications are regulated during signaling to impact cellular decision-making. To fill this knowledge gap, it will be necessary to formalize and piece together information about individual molecular mechanisms to form large-scale computational models of signaling networks. To this end, we have developed an interaction library for signaling by the high-affinity IgE receptor, FcεRI. The library consists of executable rules for protein-protein and protein-lipid interactions. This library extends earlier models for FcεRI signaling and introduces new interactions that have not previously been considered in a model. Thus, this interaction library is a toolkit with which existing models can be expanded and from which new models can be built. As an example, we present models of branching pathways from the adaptor protein Lat, which influence production of the phospholipid PIP3 at the plasma membrane and the soluble second messenger IP3. We find that inclusion of a positive feedback loop gives rise to a bistable switch, which may ensure robust responses to stimulation above a threshold level. In addition, the library is visualized to facilitate understanding of network circuitry and identification of network motifs.

  18. Insights into copper coordination in the EcoRI-DNA complex by ESR spectroscopy

    NASA Astrophysics Data System (ADS)

    Ji, Ming; Tan, Likun; Jen-Jacobson, Linda; Saxena, Sunil

    2014-12-01

    The EcoRI restriction endonuclease requires one divalent metal ion in each of two symmetrical and identical catalytic sites to catalyse double-strand DNA cleavage. Recently, we showed that Cu2+ binds outside the catalytic sites to a pair of new sites at H114 in each sub-unit, and inhibits Mg2+-catalysed DNA cleavage. In order to provide more detailed structural information on this new metal ion binding site, we performed W-band (∼94 GHz) and X-band (∼9.5 GHz) electron spin resonance spectroscopic measurements on the EcoRI-DNA-(Cu2+)2 complex. Cu2+ binding results in two distinct components with different gzz and Azz values. X-band electron spin echo envelope modulation results indicate that both components arise from a Cu2+ coordinated to histidine. This observation is further confirmed by the hyperfine sub-level correlation results. W-band electron nuclear double resonance spectra provide evidence for equatorial coordination of water molecules to the Cu2+ ions.

  19. PERI-CC2: A Polarizable Embedded RI-CC2 Method.

    PubMed

    Schwabe, Tobias; Sneskov, Kristian; Haugaard Olsen, Jógvan Magnus; Kongsted, Jacob; Christiansen, Ove; Hättig, Christof

    2012-09-11

    We present a combination of the polarizable embedding (PE) method with the resolution-of-the-identity implementation of the approximate coupled-cluster singles and doubles method CC2. The new approach, termed PERI-CC2, allows one to study excited state phenomena of large solvated molecular systems with an accurate correlated wave function method. Central to the PE approach is the advanced description of the environmental electrostatic potential and inclusion of polarization, and the quintessence of RI-CC2 is efficient access to excited state properties while retaining the accuracy associated with CC theory. To maintain efficiency, an approximate truncated CC2 density is introduced to calculate the PE contributions. Explicitly, we derive the central equations and outline an implementation of polarizable embedding for the RI-CC2 approach. The new method is tested against previous PE-CC2 and PE-CCSD results for solvatochromic shifts, demonstrating how the important effects of polarization are incorporated well with PERI-CC2 but with a dramatically reduced overall computational cost. A follow-up investigation of the solvatochromic shift of uracil in aqueous solution further illustrates the potential of PERI-CC2. We discuss the need to explicitly incorporate several water molecules into the region treated by quantum mechanics in order to obtain a reliable and accurate description of the physical effects when specific solute/solvent interactions as, e.g., hydrogen-bonds are involved. PMID:26605734

  20. Legonaridin, a new member of linaridin RiPP from a Ghanaian Streptomyces isolate.

    PubMed

    Rateb, Mostafa E; Zhai, Yin; Ehrner, Emmanuelle; Rath, Christopher M; Wang, Xiaoling; Tabudravu, Jioji; Ebel, Rainer; Bibb, Mervin; Kyeremeh, Kwaku; Dorrestein, Pieter C; Hong, Kui; Jaspars, Marcel; Deng, Hai

    2015-10-01

    Linaridins are rare linear ribosomally-synthesized and post-translationally modified peptides (RiPPs) and only two, cypemycin and SGR-1832, in this family have been identified so far. Legonaridin 1 has been discovered as a new member of linaridins through chemical isolation, peptidogenomics, comprehensive 1- and 2-D NMR and advanced Marfey's analyses from the soil bacterium Streptomyces sp. CT34, an isolate collected from Legon, Ghana. Bioinformatics analysis of the gene cluster suggested that the biosynthesis of legonaridin 1 is different from those of cypemycin and SGR-1832. Consistent with bioinformatics and peptidogenomics analyses, 1 has a total of nine post-modifications, 8 dehydrobutyrine residues and a N,N-dimethylated N-terminus with a carboxylic acid at the C-terminus. Legonaridin 1 is structurally different from the two known linaridins comprising a new subfamily. This is the first time that NMR spectroscopy is used to establish the 2-D structure of a linaridin RiPP.

  1. High-resolution abundance analysis of very metal-poor r-I stars

    NASA Astrophysics Data System (ADS)

    Siqueira Mello, C.; Hill, V.; Barbuy, B.; Spite, M.; Spite, F.; Beers, T. C.; Caffau, E.; Bonifacio, P.; Cayrel, R.; François, P.; Schatz, H.; Wanajo, S.

    2014-05-01

    Context. Moderately r-process-enriched stars (r-I; +0.3 ≤ [Eu/Fe] ≤ +1.0) are at least four times as common as those that are greatly enriched in r-process elements (r-II; [Eu/Fe] > +1.0), and the abundances in their atmospheres are important tools for obtaining a better understanding of the nucleosynthesis processes responsible for the origin of the elements beyond the iron peak. Aims: The main aim of this work is to derive abundances for a sample of seven metal-poor stars with -3.4 ≤ [Fe/H] ≤ -2.4 classified as r-I stars, to understand the role of these stars for constraining the astrophysical nucleosynthesis event(s) that is (are) responsible for the production of the r-process, and to investigate whether they differ, in any significant way, from the r-II stars. Methods: We carried out a detailed abundance analysis based on high-resolution spectra obtained with the VLT/UVES spectrograph, using spectra in the wavelength ranges 3400-4500 Å, 6800-8200 Å, and 8700-10 000 Å, with resolving power R ~ 40 000 (blue arm) and R ~ 55 000 (red arm). The OSMARCS LTE 1D model atmosphere grid was employed, along with the spectrum synthesis code Turbospectrum. Results: We have derived abundances of the light elements Li, C, and N, the α-elements Mg, Si, S, Ca, and Ti, the odd-Z elements Al, K, and Sc, the iron-peak elements V, Cr, Mn, Fe, Co, and Ni, and the trans-iron elements from the first peak (Sr, Y, Zr, Mo, Ru, and Pd), the second peak (Ba, La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, and Yb), the third peak (Os and Ir, as upper limits), and the actinides (Th) regions. The results are compared with values for these elements for r-II and "normal" very and extremely metal-poor stars reported in the literature, ages based on radioactive chronometry are explored using different models, and a number of conclusions about the r-process and the r-I stars are presented. Hydrodynamical models were used for some elements, and general behaviors for the 3D corrections

  2. Development of new auxiliary basis functions of the Karlsruhe segmented contracted basis sets including diffuse basis functions (def2-SVPD, def2-TZVPPD, and def2-QVPPD) for RI-MP2 and RI-CC calculations.

    PubMed

    Hellweg, Arnim; Rappoport, Dmitrij

    2015-01-14

    We report optimized auxiliary basis sets for use with the Karlsruhe segmented contracted basis sets including moderately diffuse basis functions (Rappoport and Furche, J. Chem. Phys., 2010, 133, 134105) in resolution-of-the-identity (RI) post-self-consistent field (post-SCF) computations for the elements H-Rn (except lanthanides). The errors of the RI approximation using optimized auxiliary basis sets are analyzed on a comprehensive test set of molecules containing the most common oxidation states of each element and do not exceed those of the corresponding unaugmented basis sets. During these studies an unsatisfying performance of the def2-SVP and def2-QZVPP auxiliary basis sets for Barium was found and improved sets are provided. We establish the versatility of the def2-SVPD, def2-TZVPPD, and def2-QZVPPD basis sets for RI-MP2 and RI-CC (coupled-cluster) energy and property calculations. The influence of diffuse basis functions on correlation energy, basis set superposition error, atomic electron affinity, dipole moments, and computational timings is evaluated at different levels of theory using benchmark sets and showcase examples.

  3. 76 FR 18812 - Submission for Review: We Need the Social Security Number of the Person Named Below, RI 38-45

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-05

    ... MANAGEMENT Submission for Review: We Need the Social Security Number of the Person Named Below, RI 38-45... the Social Security Number of the Person Named Below, RI 38-45. As required by the Paperwork Reduction... published in the Federal Register on October 6, 2010 at Volume 75 FR 61783 allowing for a 60-day...

  4. Efficient linear-scaling second-order Møller-Plesset perturbation theory: The divide-expand-consolidate RI-MP2 model.

    PubMed

    Baudin, Pablo; Ettenhuber, Patrick; Reine, Simen; Kristensen, Kasper; Kjærgaard, Thomas

    2016-02-01

    The Resolution of the Identity second-order Møller-Plesset perturbation theory (RI-MP2) method is implemented within the linear-scaling Divide-Expand-Consolidate (DEC) framework. In a DEC calculation, the full molecular correlated calculation is replaced by a set of independent fragment calculations each using a subset of the total orbital space. The number of independent fragment calculations scales linearly with the system size, rendering the method linear-scaling and massively parallel. The DEC-RI-MP2 method can be viewed as an approximation to the DEC-MP2 method where the RI approximation is utilized in each fragment calculation. The individual fragment calculations scale with the fifth power of the fragment size for both methods. However, the DEC-RI-MP2 method has a reduced prefactor compared to DEC-MP2 and is well-suited for implementation on massively parallel supercomputers, as demonstrated by test calculations on a set of medium-sized molecules. The DEC error control ensures that the standard RI-MP2 energy can be obtained to the predefined precision. The errors associated with the RI and DEC approximations are compared, and it is shown that the DEC-RI-MP2 method can be applied to systems far beyond the ones that can be treated with a conventional RI-MP2 implementation. PMID:26851903

  5. Efficient linear-scaling second-order Møller-Plesset perturbation theory: The divide-expand-consolidate RI-MP2 model.

    PubMed

    Baudin, Pablo; Ettenhuber, Patrick; Reine, Simen; Kristensen, Kasper; Kjærgaard, Thomas

    2016-02-01

    The Resolution of the Identity second-order Møller-Plesset perturbation theory (RI-MP2) method is implemented within the linear-scaling Divide-Expand-Consolidate (DEC) framework. In a DEC calculation, the full molecular correlated calculation is replaced by a set of independent fragment calculations each using a subset of the total orbital space. The number of independent fragment calculations scales linearly with the system size, rendering the method linear-scaling and massively parallel. The DEC-RI-MP2 method can be viewed as an approximation to the DEC-MP2 method where the RI approximation is utilized in each fragment calculation. The individual fragment calculations scale with the fifth power of the fragment size for both methods. However, the DEC-RI-MP2 method has a reduced prefactor compared to DEC-MP2 and is well-suited for implementation on massively parallel supercomputers, as demonstrated by test calculations on a set of medium-sized molecules. The DEC error control ensures that the standard RI-MP2 energy can be obtained to the predefined precision. The errors associated with the RI and DEC approximations are compared, and it is shown that the DEC-RI-MP2 method can be applied to systems far beyond the ones that can be treated with a conventional RI-MP2 implementation.

  6. Functional expression of the high affinity receptor for IgE (FcepsilonRI) in human platelets and its' intracellular expression in human megakaryocytes.

    PubMed

    Hasegawa, S; Pawankar, R; Suzuki, K; Nakahata, T; Furukawa, S; Okumura, K; Ra, C

    1999-04-15

    The high affinity IgE receptor (FcepsilonRI) expressed on the cell surface of mast cells and basophils is the key molecule in triggering the IgE-mediated allergic reaction. Recently, it was elucidated that the FcepsilonRI is expressed on a variety of other cells like Langerhans cells, monocytes, and eosinophils, and the functional importance of the FcepsilonRI expression in Langerhans cells was also shown. Some studies suggest that human platelets may play important roles in allergic inflammation through the cell-surface expression of the FcepsilonRII and FcgammaRII. Here, we report that human platelets and megakaryocytes constitutively express the messenger RNA and protein for the FcepsilonRI. Although the FcepsilonRI is expressed on the cell surface of human platelets, it is only detected in the cytoplasm of human megakaryocytes. We also confirmed that human platelets express the genes for the alpha, beta, and gamma chains of the FcepsilonRI without any defined mutations. Furthermore, stimulation of human platelets via the FcepsilonRI induced the release of serotonin and RANTES (Regulated on Activation, Normal T Expressed, and presumably Secreted). Taken together, these results suggest a novel and important role for human platelets in perpetuating allergic inflammation through the expression of and activation via the FcepsilonRI.

  7. Efficient linear-scaling second-order Møller-Plesset perturbation theory: The divide-expand-consolidate RI-MP2 model

    NASA Astrophysics Data System (ADS)

    Baudin, Pablo; Ettenhuber, Patrick; Reine, Simen; Kristensen, Kasper; Kjærgaard, Thomas

    2016-02-01

    The Resolution of the Identity second-order Møller-Plesset perturbation theory (RI-MP2) method is implemented within the linear-scaling Divide-Expand-Consolidate (DEC) framework. In a DEC calculation, the full molecular correlated calculation is replaced by a set of independent fragment calculations each using a subset of the total orbital space. The number of independent fragment calculations scales linearly with the system size, rendering the method linear-scaling and massively parallel. The DEC-RI-MP2 method can be viewed as an approximation to the DEC-MP2 method where the RI approximation is utilized in each fragment calculation. The individual fragment calculations scale with the fifth power of the fragment size for both methods. However, the DEC-RI-MP2 method has a reduced prefactor compared to DEC-MP2 and is well-suited for implementation on massively parallel supercomputers, as demonstrated by test calculations on a set of medium-sized molecules. The DEC error control ensures that the standard RI-MP2 energy can be obtained to the predefined precision. The errors associated with the RI and DEC approximations are compared, and it is shown that the DEC-RI-MP2 method can be applied to systems far beyond the ones that can be treated with a conventional RI-MP2 implementation.

  8. IRFM temperature calibrations for the Vilnius, Geneva, RI(C) and DDO photometric systems

    NASA Astrophysics Data System (ADS)

    Meléndez, J.; Ramírez, I.

    2003-02-01

    We have used the infrared flux method (IRFM) temperatures of a large sample of late type dwarfs given by Alonso et al. (\\cite{alonso:irfm}) to calibrate empirically the relations Teff=f (colour, [Fe/H]) for the Vilnius, Geneva, RI(C) (Cousins) and DDO photometric systems. The resulting temperature scale and intrinsic colour-colour diagrams for these systems are also obtained. From this scale, the solar colours are derived and compared with those of the solar twin 18 Sco. Since our work is based on the same Teff and [Fe/H] values used by Alonso et al. (\\cite{alonso:escala}) to calibrate other colours, we now have an homogeneous calibration for a large set of photometric systems. Based on data from the GCPD.

  9. Simultaneous Targeting of FcγRs and FcαRI Enhances Tumor Cell Killing.

    PubMed

    Brandsma, Arianne M; Ten Broeke, Toine; Nederend, Maaike; Meulenbroek, Laura A P M; van Tetering, Geert; Meyer, Saskia; Jansen, J H Marco; Beltrán Buitrago, M Alejandra; Nagelkerke, Sietse Q; Németh, István; Ubink, Ruud; Rouwendal, Gerard; Lohse, Stefan; Valerius, Thomas; Leusen, Jeanette H W; Boross, Peter

    2015-12-01

    Efficacy of anticancer monoclonal antibodies (mAb) is limited by the exhaustion of effector mechanisms. IgG mAbs mediate cellular effector functions through FcγRs expressed on effector cells. IgA mAbs can also induce efficient tumor killing both in vitro and in vivo. IgA mAbs recruit FcαRI-expressing effector cells and therefore initiate different effector mechanisms in vivo compared with IgG. Here, we studied killing of tumor cells coexpressing EGFR and HER2 by the IgG mAbs cetuximab and trastuzumab and their IgA variants. In the presence of a heterogeneous population of effector cells (leukocytes), the combination of IgG and IgA mAbs to two different tumor targets (EGFR and HER2) led to enhanced cytotoxicity compared with each isotype alone. Combination of two IgGs or two IgAs or IgG and IgA against the same target did not enhance cytotoxicity. Increased cytotoxicity relied on the presence of both the peripheral blood mononuclear cell and the polymorphonuclear (PMN) fraction. Purified natural killer cells were only cytotoxic with IgG, whereas cytotoxicity induced by PMNs was strong with IgA and poor with IgG. Monocytes, which coexpress FcγRs and FcαRI, also displayed increased cytotoxicity by the combination of IgG and IgA in an overnight killing assay. Coinjection of cetuximab and IgA2-HER2 resulted in increased antitumor effects compared with either mAb alone in a xenograft model with A431-luc2-HER2 cells. Thus, the combination of IgG and IgA isotypes optimally mobilizes cellular effectors for cytotoxicity, representing a promising novel strategy to improve mAb therapy. PMID:26407589

  10. 76 FR 50771 - Submission for Review: RI 25-37, Evidence To Prove Dependency of a Child, 3206-0206

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-16

    ... Volume 76 FR 22938 allowing for a 60-day public comment period. No comments were received for this... MANAGEMENT Submission for Review: RI 25-37, Evidence To Prove Dependency of a Child, 3206-0206 AGENCY: U.S... opportunity to comment on a revised information collection request (ICR) 3206-0206, Evidence to...

  11. Analysis of IgA1 N-glycosylation and its contribution to FcalphaRI binding.

    PubMed

    Gomes, Michelle M; Wall, Stephanie B; Takahashi, Kazuo; Novak, Jan; Renfrow, Matthew B; Herr, Andrew B

    2008-10-28

    The IgA isotype of human antibodies triggers inflammatory responses via the IgA-specific receptor FcalphaRI (CD89). Structural studies have suggested that IgA1 N-glycans could modulate the interaction with FcalphaRI. We have carried out detailed biophysical analyses of three IgA1 samples purified from human serum and recombinant IgA1-Fc and compared their binding to FcalphaRI. Analytical ultracentrifugation revealed wide variation in the distribution of polymeric species between IgA1 samples, and Fourier transform ion cyclotron resonance mass spectrometry showed overlapping but distinct populations of N-glycan species between IgA1 samples. Kinetic and equilibrium data from surface plasmon resonance experiments revealed that variation in the IgA1 C H2 N-glycans had no effect on the kinetics or affinity constants for binding to FcalphaRI. Indeed, complete enzymatic removal of the IgA1 N-glycans yielded superimposable binding curves. These findings have implications for renal diseases such as IgA nephropathy.

  12. The high-affinity receptor for IgG, FcγRI, of humans and non-human primates.

    PubMed

    Chenoweth, Alicia M; Trist, Halina M; Tan, Peck-Szee; Wines, Bruce D; Hogarth, P Mark

    2015-11-01

    Non-human primate (NHP) models, especially involving macaques, are considered important models of human immunity and have been essential in preclinical testing for vaccines and therapeutics. Despite this, much less characterization of macaque Fc receptors has occurred compared to humans or mice. Much of the characterization of macaque Fc receptors so far has focused on the low-affinity Fc receptors, particularly FcγRIIIa. From these studies, it is clear that there are distinct differences between the human and macaque low-affinity receptors and their interaction with human IgG. Relatively little work has been performed on the high-affinity IgG receptor, FcγRI, especially in NHPs. This review will focus on what is currently known of how FcγRI interacts with IgG, from mutation studies and recent crystallographic studies of human FcγRI, and how amino acid sequence differences in the macaque FcγRI may affect this interaction. Additionally, this review will look at the functional consequences of differences in the amino acid sequences between humans and macaques.

  13. 77 FR 71200 - Submission for Review: Initial Certification of Full-Time School Attendance, RI 25-41

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-29

    ... June 4, 2012 at Volume 77 FR 33007 allowing for a 60-day public comment period. No comments were... MANAGEMENT Submission for Review: Initial Certification of Full-Time School Attendance, RI 25-41 AGENCY: U.S... Full-Time School Attendance. As required by the Paperwork Reduction Act of 1995, (Pub. L. 104-13, 44...

  14. Narratives of Agency: The Experiences of Braille Literacy Practitioners in the "Kha Ri Gude" South African Mass Literacy Campaign

    ERIC Educational Resources Information Center

    McKay, Veronica I.; Romm, Norma R. A.

    2015-01-01

    In this article, we locate the "Kha Ri Gude" South African Mass Literacy Campaign within the context of the problem of illiteracy and exclusion in South Africa, while concentrating on various post-apartheid initiatives designed to give visually challenged adults the opportunity to become literate. We shall provide a detailed account of…

  15. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  16. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  17. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  18. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  19. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  20. VizieR Online Data Catalog: LDN 1570 BV(RI)c polarisation and photometry (Eswaraiah+, 2013)

    NASA Astrophysics Data System (ADS)

    Eswaraiah, C.; Maheswar, G.; Pandey, A. K.; Jose, J.; Ramaprakash, A. N.; Bhatt, H. C.

    2013-05-01

    Polarimetric observations of the field containing L1570 were carried out on ten nights; namely, 23, 24, 25, 26 November 2009; 23, 24, 27, 28 December 2009 and 27, 31 December 2010 using the ARIES Imaging Polarimeter (AIMPOL) mounted at the Cassegrain focus of the 1.04-m Sampurnanand telescope (ST) of the Aryabhatta Research Institute of Observational sciences (ARIES), Manora Peak, India. The CCD optical photometric observations of the central region (RA=06:07:33.043; DE=+19:30:52.70, 2000) of L1570 were carried out in BVRI-bands using the 1.04-m ST on 27 November 2010. Results based on optical broad-band (BV(RI)c) photometric and polarimetric observations are presented. The polarization results of various polarized standard stars (taken from Schmidt et al. 1992AJ....104.1563S) are presented along with their standard values (Table 1). Rc-band polarization data of 127 stars along with their 2MASS data (JHKs) is presented (Table 2). Polarization and Serkowski fit parameters for the 42 stars with V(RI)c pass-band data is presented (Table 3). Polarization and Serkowski fit parameters for the 15 stars with BV(RI)c pass-band data is presented (Table 4). Photometric data of 144 stars with good signal-noise-ratio (with BV(RI)c and 2MASS JHKs-photometric errors <0.1mag) is also presented (Table 6). (6 data files).

  1. Analysis of IgA1 N-glycosylation and its contribution to FcαRI binding†

    PubMed Central

    Gomes, Michelle M.; Wall, Stephanie B.; Takahashi, Kazuo; Novak, Jan; Renfrow, Matthew B.; Herr, Andrew B.

    2008-01-01

    The IgA isotype of human antibodies triggers inflammatory responses via the IgA-specific receptor FcαRI (CD89). Structural studies have suggested that IgA1 N-glycans could modulate the interaction with FcαRI. We have carried out detailed biophysical analyses of three IgA1 samples purified from human serum and recombinant IgA1-Fc and compared their binding to FcαRI. Analytical ultracentrifugation revealed wide variation in the distribution of polymeric species between IgA1 samples, and Fourier transform ion cyclotron resonance mass spectrometry showed overlapping but distinct populations of N-glycan species between IgA1 samples. Kinetic and equilibrium data from surface plasmon resonance experiments revealed that variation in the IgA1 CH2 N-glycans had no effect on the kinetics or affinity constants for binding to FcαRI. Indeed, complete enzymatic removal of the IgA1 N-glycans yielded superimposable binding curves. These findings have implications for renal diseases such as IgA nephropathy. PMID:18826328

  2. Structure of FcγRI in complex with Fc reveals the importance of glycan recognition for high-affinity IgG binding.

    PubMed

    Lu, Jinghua; Chu, Jonathan; Zou, Zhongcheng; Hamacher, Nels B; Rixon, Mark W; Sun, Peter D

    2015-01-20

    Fc gamma receptor I (FcγRI) contributes to protective immunity against bacterial infections, but exacerbates certain autoimmune diseases. The sole high-affinity IgG receptor, FcγRI plays a significant role in immunotherapy. To elucidate the molecular mechanism of its high-affinity IgG binding, we determined the crystal structure of the extracellular domains of human FcγRI in complex with the Fc domain of human IgG1. FcγRI binds to the Fc in a similar mode as the low-affinity FcγRII and FcγRIII receptors. In addition to many conserved contacts, FcγRI forms additional hydrogen bonds and salt bridges with the lower hinge region of Fc. Unique to the high-affinity receptor-Fc complex, however, is the conformation of the receptor D2 domain FG loop, which enables a charged KHR motif to interact with proximal carbohydrate units of the Fc glycans. Both the length and the charge of the FcγRI FG loop are well conserved among mammalian species. Ala and Glu mutations of the FG loop KHR residues showed significant contributions of His-174 and Arg-175 to antibody binding, and the loss of the FG loop-glycan interaction resulted in an ∼ 20- to 30-fold decrease in FcγRI affinity to all three subclasses of IgGs. Furthermore, deglycosylation of IgG1 resulted in a 40-fold loss in FcγRI binding, demonstrating involvement of the receptor FG loop in glycan recognition. These results highlight a unique glycan recognition in FcγRI function and open potential therapeutic avenues based on antibody glycan engineering or small molecular glycan mimics to target FcγRI for certain autoimmune diseases.

  3. Design Documentation for JaWE2Openflow Project

    SciTech Connect

    Mehta, N; Barter, R H

    2004-07-29

    Lawrence Livermore National Laboratory (LLNL) has chosen CIGNEX Technologies, Inc. (CIGNEX) to design and develop the JaWE2Openflow conversion software. This document was created by CIGNEX as a project deliverable.

  4. RuBPCase activase mediates growth-defense tradeoffs: Silencing RCA redirects JA flux from JA-Ile to MeJA to attenuate induced defense responses in Nicotiana attenuata

    PubMed Central

    Mitra, Sirsha; Baldwin, Ian T.

    2014-01-01

    Summary RuBPCase activase (RCA), an abundant photosynthetic protein is strongly down-regulated in response to Manduca sexta’s oral secretion (OS) in Nicotiana attenuata. RCA-silenced plants are impaired not only in photosynthetic capacity and growth, but also in jasmonic acid (JA)-isoleucine (Ile) signaling, and herbivore resistance mediated by JA-Ile dependent defense traits. These responses are consistent with a resource-based growth-defense trade-off. Since JA+Ile-supplementation of OS restored WT levels of JA-Ile, defenses and resistance to M. sexta, but OS supplemented individually with JA- or Ile did not, the JA-Ile deficiency of RCA-silenced plants could not be attributed to lower JA or Ile pools or JAR4/6 conjugating activity. Similar levels of JA-Ile derivatives after OS elicitation indicated unaltered JA-Ile turnover and lower levels of other JA-conjugates ruled out competition from other conjugation reactions. RCA-silenced plants accumulated more methyl jasmonate (MeJA) after OS elicitation, which corresponded with increased jasmonate methyltransferase (JMT) activity. RCA-silencing phenocopies JMT over-expression, wherein elevated JMT activity redirects OS-elicited JA flux towards inactive MeJA, creating a JA sink which depletes JA-Ile and its associated defense responses. Hence RCA plays an additional non-photosynthetic role in attenuating JA-mediated defenses and their associated costs potentially allowing plants to anticipate resource-based constraints on growth before they actually occur. PMID:24491116

  5. Kinetics of the appearance of Fc epsilon RI-bearing cells in interleukin-3-dependent mouse bone marrow cultures: correlation with histamine content and mast cell maturation.

    PubMed

    Rottem, M; Barbieri, S; Kinet, J P; Metcalfe, D D

    1992-02-15

    While it is known that mast cells arise from pluripotential hematopoietic cells and express their mature phenotypes in tissues, the sequence of events in maturation is incompletely understood. To study early mast cells, we sorted cells from interleukin-3 (IL-3)-dependent mouse bone marrow cultures on the basis of Fc epsilon RI and examined their morphology, histamine content, and growth characteristics. Flow cytometric analysis and sort showed that the Fc epsilon RI-bearing (Fc epsilon RI+) cells increased from 0% on day 0 to 90% by day 21 and that the total number of Fc epsilon RI+ cells increased from 0 at the start of culture to 3.75 x 10(5) cells by day 21 from an initial population of 1 x 10(5) cells. The dissociation rate of 125I-labeled IgE from early cultured cells resembled the dissociation rate of mouse IgE from mature murine mast cells. Mean fluorescence intensity increased over time, reflecting an increase in IgE receptor density. Fc epsilon RI+ cells were also positive for Fc gamma RII/III. Morphologic studies showed gradual acquisition of metachromatic granules in the Fc epsilon RI+ cells, which was paralleled by an increase in histamine content. Sorted Fc epsilon RI+ cells, when placed in liquid suspension culture, gave rise to pure mast cell populations. Fc epsilon RI+ cells sorted at day 3 and cultured in agarose with IL-3 gave rise to 4,800 small and 150 medium-size mast cell colony-forming units per 10(6) cells, while Fc epsilon RI- cells gave rise to 23 medium-size and 49 large mast cell colony-forming units per 10(6) cells. Fc epsilon RI+ cells grown in granulocyte-macrophage colony-stimulating factor (CSF) or macrophage-CSF did not give rise to colony-forming units. These results show that Fc epsilon RI+ cells have proliferative potential, but that there also is a population of mast cell progenitor cells that have not yet expressed Fc epsilon RI, and such individual progenitor cells have greater potential for proliferation than cells that

  6. The Tla protein of Porphyromonas gingivalis W50: a homolog of the RI protease precursor (PrpRI) is an outer membrane receptor required for growth on low levels of hemin.

    PubMed Central

    Aduse-Opoku, J; Slaney, J M; Rangarajan, M; Muir, J; Young, K A; Curtis, M A

    1997-01-01

    The prpR1 gene of Porphyromonas gingivalis W50 encodes the polyprotein precursor (PrpRI) of an extracellular arginine-specific protease. PrpRI is organized into four distinct domains (pro, alpha, beta, and gamma) and is processed to a heterodimeric protease (RI) which comprises the alpha and beta components in a noncovalent association. The alpha component contains the protease active site, whereas the beta component appears to have a role in adherence and hemagglutination processes. DNA sequences homologous to the coding region for the RI beta component are present at multiple loci on the P. gingivalis chromosome and may represent a family of related genes. In this report, we describe the cloning, sequence analysis, and characterization of one of these homologous loci isolated in plasmid pJM7. The 6,041-bp P. gingivalis DNA fragment in pJM7 contains a major open reading frame of 3,291 bp with coding potential for a protein with an Mr 118,700. An internal region of the deduced sequence (V304 to N768) shows 98% identity to the beta domain of PrpRI, and the recombinant product of pJM7 is immunoreactive with an antibody specific to the RI beta component. The N terminus of the deduced sequence has regional similarity to TonB-linked receptors which are frequently involved in periplasmic translocation of hemin, iron, colicins, or vitamin B12 in other bacteria. We have therefore designated this gene tla (TonB-linked adhesin). In contrast to the parent strain, an isogenic mutant of P. gingivalis W50 in which the tla was insertionally inactivated was unable to grow in medium containing low concentrations of hemin (<2.5 mg liter(-1)), and hemin-depleted cells of this mutant failed to respond to hemin in an agar diffusion plate assay. These data suggest a role for this gene product in hemin acquisition and utilization. Furthermore, the mutant produced significantly less arginine- and lysine-specific protease activities than the parent strain, indicating that there may be a

  7. Europlanet-RI: Access to Planetary Data, Tools, Models and Support Information

    NASA Astrophysics Data System (ADS)

    Schmidt, W.; Capria, M. T.; Chanteur, G.

    2012-04-01

    information is collected in the data access system of IDIS. By the end of the project in 2012 data from most planetary missions can be accessed, combined and correlated with spectral data bases for atmospheric gases and solids, laboratory measurements related to space observations and the results of model runs simulating the observations of different parameters around and at planets under various boundary conditions. The VO-structure will allow the access to these data through graphical interfaces including optimized visualization tools or alternatively through a command interface for further integration into other applications. Reference: [1] Details to IDIS and the Europlanet-RI via Web-site: http://www.idis.europlanet-ri.eu/ [2] Demonstrator implementation for Plasma-VO AMDA: http://cdpp-amda.cesr.fr/DDHTML/index.html [3] Demonstrator implementation for the IDIS-VO: http://www.idis-dyn.europlanet-ri.eu/vodev.shtml

  8. Hippocampal distribution of IL-1β and IL-1RI following lithium-pilocarpine-induced status epilepticus in the developing rat.

    PubMed

    Álvarez-Croda, Dulce-Mariely; Santiago-García, Juan; Medel-Matus, Jesús S; Martínez-Quiroz, Joel; Puig-Lagunes, Angel A; Beltrán-Parrazal, Luis; López-Meraz, María-Leonor

    2016-01-01

    The contribution of Interleukin-1β (IL-1β) to neuronal injury induced by status epilepticus (SE) in the immature brain remains unclear. The goal of this study was to determine the hippocampal expression of IL-1β and its type 1 receptor (IL-1RI) following SE induced by the lithium-pilocarpine model in fourteen-days-old rat pups; control animals were given an equal volume of saline instead of the convulsant. IL-1β and IL-1RI mRNA hippocampal levels were assessed by qRT-PCR 6 and 24 h after SE or control conditions. IL-1β and IL-1RI expression was detected in the dorsal hippocampus by immunohistochemical procedures; Fluoro-Jade B staining was carried out in parallel sections in order to detect neuronal cell death. IL-1β mRNA expression was increased 6 h following SE, but not at 24 h; however IL-1RI mRNA expression was unaffected when comparing with the control group. IL-1β and IL-1RI immunoreactivity was not detected in control animals. IL-1β and IL-1RI were expressed in the CA1 pyramidal layer, the dentate gyrus granular layer and the hilus 6 h after SE, whereas injured cells were detected 24 h following seizures. Early expression of IL-1β and IL-1RI in the hippocampus could be associated with SE-induced neuronal cell death mechanisms in the developing rat. PMID:27168372

  9. Methoxychlor enhances degranulation of murine mast cells by regulating FcεRI-mediated signal transduction.

    PubMed

    Yasunaga, Sho; Nishi, Kosuke; Nishimoto, Sogo; Sugahara, Takuya

    2015-01-01

    Methoxychlor, an organochlorine insecticide developed to replace DDT (dichlorodiphenyltrichloroethane), has been reported to induce mast cell degranulation and to enhance IgE-mediated allergic responses. However, the mechanisms underlying these effects are not clear. To clarify potential mechanisms, the effects of methoxychlor on degranulation of mast cells were examined. Degranulation responses were evaluated using RBL-2H3 cells and mouse bone marrow-derived mast cells with either the antigen-induced or calcium ionophore-induced stimulation. Phosphorylation of enzymes related to signaling events associated with mast cell degranulation was analyzed by immunoblotting. Effects on vascular permeability in the passive cutaneous anaphylaxis reaction were evaluated following oral administration of methoxychlor to BALB/c mice. The results indicated that methoxychlor caused increased mast cell degranulation in the presence of antigen, whereas it had no effect on calcium ionophore-induced degranulation of RBL-2H3 cells. Immunoblot analyses demonstrated that the phosphorylation level of phosphoinositide 3-kinase (which plays a central role in mast cell signaling) was increased by methoxychlor during antigen-induced degranulation. In addition, methoxychlor activated the signaling pathway via the high-affinity IgE receptor by inducing phosphorylation of Syk and PLCγ1/2, which transfer the signal for degranulation downstream. Lastly, oral administration of methoxychlor exhibited a tendency to promote vascular permeability in passive cutaneous anaphylaxis model mice. Taken together, the results here suggested that methoxychlor enhanced degranulation through FcεRI-mediated signaling and promoted allergenic symptoms involved in mast cell degranulation.

  10. SERS nanosensors that report pH of endocytic compartments during FcεRI transit

    PubMed Central

    Nowak-Lovato, K.L.; Wilson, Bridget S.; Rector, K.D.

    2011-01-01

    Recently, the development of an IgE receptor (FcεRI)-targeted, pH sensitive, surface-enhanced Raman spectroscopy (SERS) nanosensor has been demonstrated [1]. The targeted nanosensor enables spatial and temporal pH measurements as internalized receptors progress through endosomal compartments in live cells. Trafficking of receptor-bound nanosensors was compared at physiological temperature (37°C) versus room temperature (25°C). As expected, we observed markedly slower progression of receptors through low pH endocytic compartments at the lower temperature. We also demonstrate the utility of the nanosensors to measure directly changes in the pH of intracellular compartments after treatment with bafilomycin or amiloride. We report an increase in endosome compartment pH after treatment with bafilomycin, an H+ ATPase pump inhibitor. Decreased endosomal luminal pH was measured in cells treated with amiloride, an inhibitor of Na+/H+ exchange. The decrease in amiloride-treated cells was transient, followed by a recovery period of approximately 15–20 minutes to restore endosomal pH. These experiments demonstrate the novel application of Raman spectroscopy to monitor local pH environment in live cells with the use of targeted SERS nanosensors. PMID:20842349

  11. The EnRiCH Community Resilience Framework for High-Risk Populations

    PubMed Central

    O'Sullivan, Tracey L.; Kuziemsky, Craig E.; Corneil, Wayne; Lemyre, Louise; Franco, Zeno

    2014-01-01

    Introduction: Resilience has been described in many ways and is inherently complex. In essence, it refers to the capacity to face and do well when adversity is encountered. There is a need for empirical research on community level initiatives designed to enhance resilience for high-risk groups as part of an upstream approach to disaster management. In this study, we address this issue, presenting the EnRiCH Community Resilience Framework for High-Risk Populations. Methods: The framework presented in this paper is empirically-based, using qualitative data from focus groups conducted as part of an asset-mapping intervention in five communities in Canada, and builds on extant literature in the fields of disaster and emergency management, health promotion, and community development. Results: Adaptive capacity is placed at the centre of the framework as a focal point, surrounded by four strategic areas for intervention (awareness/communication, asset/resource management, upstream-oriented leadership, and connectedness/engagement). Three drivers of adaptive capacity (empowerment, innovation, and collaboration) cross-cut the strategic areas and represent levers for action which can influence systems, people and institutions through expansion of asset literacy. Each component of the framework is embedded within the complexity and culture of a community. Discussion: We present recommendations for how this framework can be used to guide the design of future resilience-oriented initiatives with particular emphasis on inclusive engagement across a range of functional capabilities. PMID:25642373

  12. The R.I. Pimenov unified gravitation and electromagnetism field theory as semi-Riemannian geometry

    SciTech Connect

    Gromov, N. A.

    2009-05-15

    More than forty years ago R.I. Pimenov introduced a new geometry-semi-Riemannian one-as a set of geometrical objects consistent with a fibering pr: M{sub n} {yields} M{sub m}. He suggested the heuristic principle according to which the physically different quantities (meter, second, Coulomb, etc.) are geometrically modelled as space coordinates that are not superposed by automorphisms. As there is only one type of coordinates in Riemannian geometry and only three types of coordinates in pseudo-Riemannian one, a multiple-fibered semi-Riemannian geometry is the most appropriate one for the treatment of more than three different physical quantities as unified geometrical field theory. Semi-Euclidean geometry {sup 3}R{sub 5}{sup 4} with 1-dimensional fiber x{sup 5} and 4-dimensional Minkowski space-time as a base is naturally interpreted as classical electrodynamics. Semi-Riemannian geometry {sup 3}V{sub 5}{sup 4} with the general relativity pseudo-Riemannian space-time {sup 3}V{sub 4}, and 1-dimensional fiber x{sup 5}, responsible for the electromagnetism, provides the unified field theory of gravitation and electromagnetism. Unlike Kaluza-Klein theories, where the fifth coordinate appears in nondegenerate Riemannian or pseudo-Riemannian geometry, the theory based on semi-Riemannian geometry is free from defects of the former. In particular, scalar field does not arise.

  13. Hydrometeor Trajectories and Distributions in a Simulation of TC Rapid Intensification (RI)

    NASA Astrophysics Data System (ADS)

    Zhu, Z.; Zhu, P.

    2010-12-01

    It has long been recognized that the microphysics scheme used in a numerical simulation of tropical cyclones (TC) can greatly affect the precipitation distribution, intensity and thermodynamic structure of the simulated TC. This suggests that the mixing ratios, concentrations and size distributions of hydrometeor(snow, graupel,rain,cloud ice) are important factors in the evolution of TC . The transport of hydrometeor may have a strong influence on these factors through its interactions with the growth and the latent heat forcing of hydrometeor and the wind filed, hence is a key to understanding TC microphysics. Schematic hydrometeor trajectories were first constructed using 3-D wind field and particle fallspeeds derived from airborne radar observations in a steady-state mature hurricane,Alicia(1983). Since then, little effort has been put in understanding hydrometeor transport in TC, especially the potential link between its evolution and the intensity and structure changes in a non-steady-state TC. This study is focused on investigating such a link by means of numerical simulations of TC Rapid Intensification(RI) using WRF model. We use the tracer utility in WRF to construct hydrometeor trajectories. Most of the popular microphysics schemes are tested, and the most reasonable test( which is determined by comparing the simulated TC intensity and structure with airborne radar observations) and the ensemble mean of all the tests are picked for detailed examinations.

  14. A gas circulation and purification system for gas-cell-based low-energy RI-beam production.

    PubMed

    Sonoda, T; Tsubota, T; Wada, M; Katayama, I; Kojima, T M; Reponen, M

    2016-06-01

    A gas circulation and purification system was developed at the RIKEN Radioactive Isotope Beam Factory that can be used for gas-cell-based low-energy RI-beam production. A high-flow-rate gas cell filled with one atmosphere of buffer gas (argon or helium) is used for the deceleration and thermalization of high-energy RI-beams. The exhausted buffer gas is efficiently collected using a compact dry pump and returned to the gas cell with a recovery efficiency of >97%. The buffer gas is efficiently purified using two gas purifiers as well as collision cleaning, which eliminates impurities in the gas. An impurity level of one part per billion is achieved with this method. PMID:27370494

  15. A gas circulation and purification system for gas-cell-based low-energy RI-beam production

    NASA Astrophysics Data System (ADS)

    Sonoda, T.; Tsubota, T.; Wada, M.; Katayama, I.; Kojima, T. M.; Reponen, M.

    2016-06-01

    A gas circulation and purification system was developed at the RIKEN Radioactive Isotope Beam Factory that can be used for gas-cell-based low-energy RI-beam production. A high-flow-rate gas cell filled with one atmosphere of buffer gas (argon or helium) is used for the deceleration and thermalization of high-energy RI-beams. The exhausted buffer gas is efficiently collected using a compact dry pump and returned to the gas cell with a recovery efficiency of >97%. The buffer gas is efficiently purified using two gas purifiers as well as collision cleaning, which eliminates impurities in the gas. An impurity level of one part per billion is achieved with this method.

  16. Basis of the 1:1 stoichiometry of the high affinity receptor Fc epsilon RI-IgE complex.

    PubMed

    Keown, M B; Ghirlando, R; Mackay, G A; Sutton, B J; Gould, H J

    1997-01-01

    A soluble fragment of the high-affinity IgE receptor Fc epsilon RI alpha-chain (sFc epsilon RI alpha) binds to the Fc fragment of IgE (IgE-Fc) as a 1:1 complex. IgE-Fc consists of a dimer of the C epsilon 2, C epsilon 3 and C epsilon 4 domains of the epsilon-heavy chain of IgE. This region of IgE has been modelled on the crystal structure of the Fc region of IgG1, which exhibits twofold rotational symmetry. This implies that IgE should be divalent with respect to its ligands. X-ray scattering studies reveal however that the twofold rotational symmetry of IgE-Fc is perturbed by a bend in the linker region between the C epsilon 2 and C epsilon 3 domains. The 1:1 stoichiometry could then arise from the conformational asymmetry or from steric occlusion of one of the sites by the overhanging C epsilon 2 domains. To test this hypothesis we have expressed a recombinant epsilon-chain fragment containing C epsilon 3 and C epsilon 4. This product, Fc epsilon 3-4, is secreted from cells as a disulphide linked dimer and binds with higher affinity than either IgE or IgE-Fc to cell surface Fc epsilon RI. Titration experiments, together with molecular mass measurements of the Fc epsilon 3-4/sFc epsilon RI alpha complex, reveal that Fc epsilon 3-4 binds only a single receptor molecule. This excludes the possibility that steric hindrance by C epsilon 2 accounts for the unexpected stoichiometry.

  17. Dental caries prevalence as a product of agriculture and subsistence pattern at the Yean-ri site, South Korea.

    PubMed

    Fujita, H; Hashimoto, H; Shoda, S; Suzuki, T

    2011-01-01

    Yean-ri human skeletal remains from South Korea have been dated to the fourth to seventh century AD. They have morphological similarities to immigrants of the Yayoi period excavated in northern Kyushu and Yamaguchi prefecture in Japan. The overall dental caries prevalence was 8.1% in the Yean-ri skeletal remains, indicating a much lower prevalence than that of most Yayoi immigrant skeletal remains from Japan, although similar to that of the Kofun people (8.3%) in Japan. There was no significant difference in the dental caries prevalence between the males and females of the same age group, but there were differences in the prevalence by age. The late middle age and elderly males and females had significantly higher dental caries prevalence than the early middle age males and females, indicating increased prevalence with age. Root caries prevalence tended to increase in old age. The percentage of root caries increased, accounting for 80% of all caries in Yean-ri human skeletal remains. Agriculture is believed to have arisen approximately 3,000 years ago in Korea. Therefore, agriculture was practiced during this period, but since the Yean-ri tumuli are from coastal areas, their diet may have retained a significant marine component. Additionally, caries prevalence was not very high in Nukdo human remains (ca. 2100-2000 BC) in Korea. We speculate that they maintained subsistence activities suitable for their environment despite their knowledge of agriculture. This hypothesis is supported by differences in the caries prevalence between excavation sites of the Yayoi and Kofun periods in Japan.

  18. Carboplatin-induced severe hypersensitivity reaction: role of IgE-dependent basophil activation and FcεRI.

    PubMed

    Iwamoto, Takuya; Hirai, Hiroyuki; Yamaguchi, Nozomi; Kobayashi, Natsuki; Sugimoto, Hiroko; Tabata, Tsutomu; Okuda, Masahiro

    2014-11-01

    Basophil activation was observed in patients with a history of carboplatin-induced severe hypersensitivity reaction (HR). However, the precise mechanism by which carboplatin induces basophil activation and the associated surrogate markers remains to be elucidated. To investigate whether IgE-dependent mechanisms, including the overexpression of FcεRI, participate in carboplatin-induced basophil activation, 13 ovarian cancer patients were enrolled: 5 with a history of carboplatin-induced severe hypersensitivity reaction within the past 2 years, and 8 with no such history. The expression levels of FcεRI, IgE, and CD203c on basophils were measured using a flow cytometer. Immunoglobulin E-dependent basophil activation was evaluated by testing for IgE passive sensitization using lactic acid, and by testing for phosphatidylinositol 3-kinase inhibition, using wortmannin. In three patients positive for carboplatin hypersensitivity, pretreatment with wortmannin almost completely inhibited carboplatin-induced basophil activation (P < 0.05). In a healthy control subject, whose own IgE showed no response to carboplatin, acquired reactivity to carboplatin when exposed to plasma from patients positive for carboplatin hypersensitivity. This did not occur when the same experiment was carried out using plasma from the patients negative for carboplatin hypersensitivity. Moreover, pretreatment with omalizumab, a monoclonal anti-IgE antibody, almost completely blocked carboplatin-induced basophil activation in the plasma of patients positive for carboplatin hypersensitivity. On further investigation, the HR-positive group had significantly higher levels of FcεRI compared with the negative group (P < 0.05). In conclusion, an IgE-dependent mechanism incorporating FcεRI overexpression participates in carboplatin-induced severe HR. These results establish the relevance of monitoring the pharmacodynamic changes of basophils to prevent carboplatin-induced severe HR.

  19. Positive and negative regulation of FcepsilonRI-mediated signaling by the adaptor protein LAB/NTAL.

    PubMed

    Zhu, Minghua; Liu, Yan; Koonpaew, Surapong; Granillo, Olivia; Zhang, Weiguo

    2004-10-18

    Linker for activation of B cells (LAB, also called NTAL; a product of wbscr5 gene) is a newly identified transmembrane adaptor protein that is expressed in B cells, NK cells, and mast cells. Upon BCR activation, LAB is phosphorylated and interacts with Grb2. LAB is capable of rescuing thymocyte development in LAT-deficient mice. To study the in vivo function of LAB, LAB-deficient mice were generated. Although disruption of the Lab gene did not affect lymphocyte development, it caused mast cells to be hyperresponsive to stimulation via the FcepsilonRI, evidenced by enhanced Erk activation, calcium mobilization, degranulation, and cytokine production. These data suggested that LAB negatively regulates mast cell function. However, mast cells that lacked both linker for activation of T cells (LAT) and LAB proteins had a more severe block in FcepsilonRI-mediated signaling than LAT(-/-) mast cells, demonstrating that LAB also shares a redundant function with LAT to play a positive role in FcepsilonRI-mediated signaling.

  20. Aryl hydrocarbon receptor-dependent induction of the IgA receptor FcαRI by the environmental contaminant benzo(a)pyrene in human macrophages.

    PubMed

    Pinel-Marie, Marie-Laure; Louarn, Laetitia; Desmots, Sophie; Fardel, Olivier; Sparfel, Lydie

    2011-11-28

    Polycyclic aromatic hydrocarbons (PAHs), such as benzo(a)pyrene (BaP), are widely distributed toxic environmental contaminants well known to regulate gene expression through activation of the aryl hydrocarbon receptor (AhR). In the present study, we demonstrated that the IgA receptor FcαRI/CD89 constitutes a molecular target for PAHs. Indeed, in vitro exposure to BaP markedly increased mRNA and protein expression of FcαRI in primary human macrophages; intratracheal instillation of BaP to rats also enhanced mRNA expression of FcαRI in alveolar macrophages. BaP concomitantly increased activity of the previously uncharacterized -1734 to -42 fragment of the FcaRI promoter that we subcloned in a luciferase reporter vector. Three-methylcholanthrene, a PAH known to activate AhR like BaP, induced FcαRI expression, in contrast to benzo(e)pyrene, a PAH known to poorly interact with AhR. Moreover, FcαRI induction in BaP-exposed human macrophages was fully prevented by down-regulating AhR expression through small interference RNA transfection. In addition, BaP increased nuclear protein binding to a consensus AhR-related xenobiotic-responsive element found in the FcαRI gene promoter, as revealed by electrophoretic mobility shift assay. Overall, these data highlight an AhR-dependent up-regulation of FcαRI in response to BaP, which may contribute to the deleterious effects of environmental PAHs toward the immune/inflammatory response and which also likely emphasizes the role played by AhR in the regulation of genes involved in immunity and inflammation.

  1. Human Eosinophils Express the High Affinity IgE Receptor, FcεRI, in Bullous Pemphigoid

    PubMed Central

    Messingham, Kelly N.; Holahan, Heather M.; Frydman, Alexandra S.; Fullenkamp, Colleen; Srikantha, Rupasree; Fairley, Janet A.

    2014-01-01

    Bullous pemphigoid (BP) is an autoimmune blistering disease mediated by autoantibodies targeting BP180 (type XVII collagen). Patient sera and tissues typically have IgG and IgE autoantibodies and elevated eosinophil numbers. Although the pathogenicity of the IgE autoantibodies is established in BP, their contribution to the disease process is not well understood. Our aims were two-fold: 1) To establish the clinical relationships between total and BP180-specific IgE, eosinophilia and other markers of disease activity; and 2) To determine if eosinophils from BP patients express the high affinity IgE receptor, FcεRI, as a potential mechanism of action for IgE in BP. Our analysis of 48 untreated BP patients revealed a correlation between BP180 IgG and both BP180 IgE and peripheral eosinophil count. Additionally, we established a correlation between total IgE concentration and both BP180 IgE levels and eosinophil count. When only sera from patients (n = 16) with total IgE≥400 IU/ml were analyzed, BP180 IgG levels correlated with disease severity, BP230 IgG, total circulating IgE and BP180 IgE. Finally, peripheral eosinophil count correlated more strongly with levels of BP180 IgE then with BP180 IgG. Next, eosinophil FcεRI expression was investigated in the blood and skin using several methods. Peripheral eosinophils from BP patients expressed mRNA for all three chains (α, β and γ) of the FcεRI. Surface expression of the FcεRIα was confirmed on both peripheral and tissue eosinophils from most BP patients by immunostaining. Furthermore, using a proximity ligation assay, interaction of the α- and β-chains of the FcεRI was observed in some biopsy specimens, suggesting tissue expression of the trimeric receptor form in some patients. These studies provide clinical support for the relevance of IgE in BP disease and provide one mechanism of action of these antibodies, via binding to the FcεRI on eosinophils. PMID:25255430

  2. Human eosinophils express the high affinity IgE receptor, FcεRI, in bullous pemphigoid.

    PubMed

    Messingham, Kelly N; Holahan, Heather M; Frydman, Alexandra S; Fullenkamp, Colleen; Srikantha, Rupasree; Fairley, Janet A

    2014-01-01

    Bullous pemphigoid (BP) is an autoimmune blistering disease mediated by autoantibodies targeting BP180 (type XVII collagen). Patient sera and tissues typically have IgG and IgE autoantibodies and elevated eosinophil numbers. Although the pathogenicity of the IgE autoantibodies is established in BP, their contribution to the disease process is not well understood. Our aims were two-fold: 1) To establish the clinical relationships between total and BP180-specific IgE, eosinophilia and other markers of disease activity; and 2) To determine if eosinophils from BP patients express the high affinity IgE receptor, FcεRI, as a potential mechanism of action for IgE in BP. Our analysis of 48 untreated BP patients revealed a correlation between BP180 IgG and both BP180 IgE and peripheral eosinophil count. Additionally, we established a correlation between total IgE concentration and both BP180 IgE levels and eosinophil count. When only sera from patients (n = 16) with total IgE ≥ 400 IU/ml were analyzed, BP180 IgG levels correlated with disease severity, BP230 IgG, total circulating IgE and BP180 IgE. Finally, peripheral eosinophil count correlated more strongly with levels of BP180 IgE then with BP180 IgG. Next, eosinophil FcεRI expression was investigated in the blood and skin using several methods. Peripheral eosinophils from BP patients expressed mRNA for all three chains (α, β and γ) of the FcεRI. Surface expression of the FcεRIα was confirmed on both peripheral and tissue eosinophils from most BP patients by immunostaining. Furthermore, using a proximity ligation assay, interaction of the α- and β-chains of the FcεRI was observed in some biopsy specimens, suggesting tissue expression of the trimeric receptor form in some patients. These studies provide clinical support for the relevance of IgE in BP disease and provide one mechanism of action of these antibodies, via binding to the FcεRI on eosinophils. PMID:25255430

  3. Enhanced production of single copy backbone-free transgenic plants in multiple crop species using binary vectors with a pRi replication origin in Agrobacterium tumefaciens.

    PubMed

    Ye, Xudong; Williams, Edward J; Shen, Junjiang; Johnson, Susan; Lowe, Brenda; Radke, Sharon; Strickland, Steve; Esser, James A; Petersen, Michael W; Gilbertson, Larry A

    2011-08-01

    Single transgene copy, vector backbone-free transgenic crop plants are highly desired for functional genomics and many biotechnological applications. We demonstrate that binary vectors that use a replication origin derived from the Ri plasmid of Agrobacterium rhizogenes (oriRi) increase the frequency of single copy, backbone-free transgenic plants in Agrobacterium tumefaciens mediated transformation of soybean, canola, and corn, compared to RK2-derived binary vectors (RK2 oriV). In large scale soybean transformation experiments, the frequency of single copy, backbone-free transgenic plants was nearly doubled in two versions of the oriRi vectors compared to the RK2 oriV control vector. In canola transformation experiments, the oriRi vector produced more single copy, backbone-free transgenic plants than did the RK2 oriV vector. In corn transformation experiments, the frequency of single copy backbone-free transgenic plants was also significantly increased when using the oriRi vector, although the transformation frequency dropped. These results, derived from transformation experiments using three crops, indicate the advantage of oriRi vectors over RK2 oriV binary vectors for the production of single copy, backbone-free transgenic plants using Agrobacterium-mediated transformation.

  4. Measuring and monitoring in the South African Kha Ri Gude mass literacy campaign

    NASA Astrophysics Data System (ADS)

    McKay, Veronica

    2015-06-01

    After many previous failed attempts to reach illiterate adults, the award-winning South African Kha Ri Gude mass literacy campaign, launched in 2008, undertook to ensure that learners seized the opportunity to learn - for many adults, this was a "last chance". Written from an insider perspective by the campaign's founding Chief Executive Officer, this article outlines the features which contributed to its success despite the many challenges it initially faced. The author outlines the social and legislative backdrop, notably the South African National Qualifications Framework (NQF) providing the scaffold for the continuum of adult learning and the assessment of learning outcomes, and examines the various components which influenced the design of the campaign. She focuses, in particular, on the learning outcomes measurement model tailored to the campaign's specific context, namely a structured and standardised learner assessment portfolio (LAP). Designed as a tool to be administered universally for both formative and diagnostic purposes, the portfolio enables continuous assessment, forming an integral part of the process of learning and teaching. After many initial challenges encountered in introducing this mode of learner assessment, it was eventually institutionalised and found to be a non-threatening way of assessing learning outcomes while also functioning as a tool for monitoring and ensuring accountability in the campaign. This article gives an account of the development considerations and explains the role of the assessment process within the broader context of the campaign. It also refers to ways in which the mass-based assessments were administered under difficult campaign conditions with a view to assessing for learning.

  5. First flight of SMASH, the SwRI Miniature Assembly for Solar Hard X-rays

    NASA Astrophysics Data System (ADS)

    Caspi, Amir; Laurent, Glenn Thomas; Shoffner, Michael; Higuera Caubilla, David; Meurisse, Jeremie; Smith, Kelly; Shih, Albert Y.; Saint-Hilaire, Pascal; DeForest, Craig; Mansour, Nagi N.; Hathaway, David H.

    2016-05-01

    The SwRI Miniature Assembly for Solar Hard X-rays (SMASH) was successfully flown from Antarctica in January (19-30) 2016, as a piggy-back instrument on the Gamma-Ray Imager/Polarimeter for Solar flares (GRIPS) high altitude balloon payload. SMASH is a technological demonstration of a new miniaturized hard X-ray (HXR) detector for use on CubeSats and other small spacecraft, including the proposed CubeSat Imaging X-ray Solar Spectrometer (CubIXSS).HXRs are the observational signatures of energetic processes on the Sun, including plasma heating and particle acceleration. One of the goals of CubIXSS will be to address the question of how plasma is heated during solar flares, including the relationship between thermal plasma and non-thermal particles. SMASH demonstrated the space-borne application of the commercial off-the-shelf Amptek X123-CdTe, a miniature cadmium telluride photon-counting HXR spectrometer. The CdTe detector has a physical area of 25 mm^2 and 1 mm fully-depleted thickness, with a ~100 micron Be window; with on-board thermoelectric cooling and pulse pile-up rejection, it is sensitive to solar photons from ~5 to ~100 keV with ~0.5-1.0 keV FWHM resolution. Photons are accumulated into histogram spectra with customizable energy binning and integration time. With modest resource requirements (~1/8 U, ~200 g, ~2.5 W) and low cost (~$10K), the X123-CdTe is an attractive solution for HXR measurements from budget- and resource-limited platforms such as CubeSats. SMASH flew two identical X123-CdTe detectors for redundancy and increased collecting area; the supporting electronics (power, CPU) were largely build-to-print using the Miniature X-ray Solar Spectrometer (MinXSS) CubeSat design.We review the SMASH mission, design, and detector performance during the 12-day Antarctic flight. We present current progress on our data analysis of observed solar flares, and discuss future applications of the space-qualified X123-CdTe detector, including the CubIXSS mission

  6. Regulation of rat basophilic leukemia-2H3 mast cell secretion by a constitutive Lyn kinase interaction with the high affinity IgE receptor (Fc epsilon RI).

    PubMed

    Vonakis, Becky M; Gibbons, Scott P; Rotté, Masashi J; Brothers, Elizabeth A; Kim, Seok C; Chichester, Kristin; MacDonald, Susan M

    2005-10-01

    Signaling through the high affinity IgE receptor is initiated by noncovalently associated Lyn kinase, resulting in the secretion of inflammatory mediators from mast cells. A fraction of the total cellular Lyn is associated via its N-terminal unique domain with the cytoplasmic domain of the Fc epsilonRI beta subunit before receptor aggregation. In the current study, we stably transfected the unique domain of Lyn into rat basophilic leukemia-2H3 mast cells and examined the consequences on Fc epsilonRI-induced signal transduction and mediator secretion to further define the role of the unique domain of Lyn in mast cell secretion. Tyrosine phosphorylation of Fc epsilonRI beta and gamma subunits was partially inhibited in the Lyn unique domain transfectants after Ag stimulation. Ag stimulation of Lyn unique domain transfectants was accompanied by enhanced phosphorylation of MEK and ERK-2, which are required for leukotriene C4 (LTC4) release, and production of LTC4 was increased 3- to 5-fold, compared with cells transfected with vector alone. Conversely, tyrosine phosphorylation of the adaptor protein Gab2, which is essential for mast cell degranulation, was inhibited after Ag stimulation of Lyn unique domain transfectants, and Ag-induced release of histamine was inhibited up to 48%. In rat basophilic leukemia-2H3 cells, Lyn thus plays a dual role by positively regulating Fc epsilonRI phosphorylation and degranulation while negatively regulating LTC4 production. This study provides further evidence that the constitutive interaction between the unique domain of Lyn and the Fc epsilonRI beta subunit is a crucial step in the initiation of Fc epsilonRI signaling and that Lyn is limiting for Fc epsilonRI-induced secretion of inflammatory mediators.

  7. Engineered selective plant male sterility through pollen-specific expression of the EcoRI restriction endonuclease.

    PubMed

    Millwood, Reginald J; Moon, Hong S; Poovaiah, Charleson R; Muthukumar, Balasubramaniam; Rice, John Hollis; Abercrombie, Jason M; Abercrombie, Laura L; Green, William Derek; Stewart, Charles Neal

    2016-05-01

    Unintended gene flow from transgenic plants via pollen, seed and vegetative propagation is a regulatory concern because of potential admixture in food and crop systems, as well as hybridization and introgression to wild and weedy relatives. Bioconfinement of transgenic pollen would help address some of these concerns and enable transgenic plant production for several crops where gene flow is an issue. Here, we demonstrate the expression of the restriction endonuclease EcoRI under the control of the tomato pollen-specific LAT52 promoter is an effective method for generating selective male sterility in Nicotiana tabacum (tobacco). Of nine transgenic events recovered, four events had very high bioconfinement with tightly controlled EcoRI expression in pollen and negligible-to-no expression other plant tissues. Transgenic plants had normal morphology wherein vegetative growth and reproductivity were similar to nontransgenic controls. In glasshouse experiments, transgenic lines were hand-crossed to both male-sterile and emasculated nontransgenic tobacco varieties. Progeny analysis of 16 000-40 000 seeds per transgenic line demonstrated five lines approached (>99.7%) or attained 100% bioconfinement for one or more generations. Bioconfinement was again demonstrated at or near 100% under field conditions where four transgenic lines were grown in close proximity to male-sterile tobacco, and 900-2100 seeds per male-sterile line were analysed for transgenes. Based upon these results, we conclude EcoRI-driven selective male sterility holds practical potential as a safe and reliable transgene bioconfinement strategy. Given the mechanism of male sterility, this method could be applicable to any plant species.

  8. Application of STORMTOOLS's simplified flood inundation model with sea level rise to assess impacts to RI coastal areas

    NASA Astrophysics Data System (ADS)

    Spaulding, M. L.

    2015-12-01

    The vision for STORMTOOLS is to provide access to a suite of coastal planning tools (numerical models et al), available as a web service, that allows wide spread accessibly and applicability at high resolution for user selected coastal areas of interest. The first product developed under this framework were flood inundation maps, with and without sea level rise, for varying return periods for RI coastal waters. The flood mapping methodology is based on using the water level vs return periods at a primary NOAA water level gauging station and then spatially scaling the values, based on the predictions of high resolution, storm and wave simulations performed by Army Corp of Engineers, North Atlantic Comprehensive Coastal Study (NACCS) for tropical and extratropical storms on an unstructured grid, to estimate inundation levels for varying return periods. The scaling for the RI application used Newport, RI water levels as the reference point. Predictions are provided for once in 25, 50, and 100 yr return periods (at the upper 95% confidence level), with sea level rises of 1, 2, 3, and 5 ft. Simulations have also been performed for historical hurricane events including 1938, Carol (1954), Bob (1991), and Sandy (2012) and nuisance flooding events with return periods of 1, 3, 5, and 10 yr. Access to the flooding maps is via a web based, map viewer that seamlessly covers all coastal waters of the state at one meter resolution. The GIS structure of the map viewer allows overlays of additional relevant data sets (roads and highways, wastewater treatment facilities, schools, hospitals, emergency evacuation routes, etc.) as desired by the user. The simplified flooding maps are publically available and are now being implemented for state and community resilience planning and vulnerability assessment activities in response to climate change impacts.

  9. Infantile facioscapulohumeral muscular dystrophy revisited: Expansion of clinical phenotypes in patients with a very short EcoRI fragment.

    PubMed

    Chen, Tai-Heng; Lai, Yu-Hung; Lee, Pei-Lun; Hsu, Jong-Hau; Goto, Kanako; Hayashi, Yukiko K; Nishino, Ichizo; Lin, Chin-Wen; Shih, Hsiang-Hung; Huang, Chao-Ching; Liang, Wen-Chen; Wang, Wen-Fu; Jong, Yuh-Jyh

    2013-04-01

    Contrary to the classical form, infantile facioscapulohumeral muscular dystrophy (FSHD) usually denotes a severe phenotype and is frequently associated with extramuscular involvements. To elucidate the genotype-phenotype correlation in this severe subgroup, we identified a cohort of nine patients with infantile FSHD who also carried a very short (10-13kb) EcoRI fragment. Their current age ranged from 8 to 33 years and age of onset ranged from 0.4 to 5 years. One patient even manifested his first FSHD-related symptoms at as early as 5 months of age, including inability to smile, poor response to call, and infantile spasms. To date, four patients were wheelchair-bound and six patients had asymmetric weakness. Sensorineural hearing loss and abnormal fundoscopic findings were observed in eight and all of patients respectively. Three with the smallest EcoRI fragments (10-11kb, with normal length being 50-300kb) had mental retardation. Two of these had epilepsy. Cardiac arrhythmias were found in five patients. Restrictive ventilatory defects were observed in seven patients, with one progressing to chronic respiratory failure. Two had swallowing difficulties; one of these required gastrostomy. We identified several rarely reported phenotypes in infantile FSHD, including cardiac arrhythmia, respiratory insufficiency, and swallowing difficulties. There seems to be a correlation between the severity of phenotype and the very short EcoRI fragment in the chromosome 4q35 region. We conclude that the high frequency of multi-organ involvements in this severe FSHD variant suggests the need for an early and multidisciplinary intervention. PMID:23434070

  10. Population trends and flight behavior of the American burying beetle, Nicrophorus americanus (Coleoptera: Silphidae), on Block Island, RI

    USGS Publications Warehouse

    Raithel, C.J.; Ginsberg, H.S.; Prospero, M.L.

    2006-01-01

    The endangered American burying beetle, Nicrophorus americanus, was monitored on Block Island, RI, USA, from 1991-2003 using mark-recapture population estimates of adults collected in pitfall traps. Populations increased through time, especially after 1994 when a program was initiated that provided carrion for beetle production. Beetle captures increased with increasing temperature and dew point, and decreased with increasing wind speed. Short distance movement was not related to wind direction, while longer distance flights tended to be downwind. Although many individuals flew considerable distances along transects, most recaptures were in traps near the point of release. These behaviors probably have counterbalancing effects on population estimates.

  11. Low-energy RI beam technology and nuclear clusters in the explosive pp-chain breakout process

    SciTech Connect

    Kubono, S.; Yamaguchi, H.; Kahl, D. M.; Ohshiro, Y.; Watanabe, S.; Yamazaki, N.; Teranishi, T.; Yanagisawa, Y.; Wakabayashi, Y.; Kase, M.; Hayakawa, S.; Kwon, Y. K.; Hashimoto, T.; Fukuda, Y.; He, J. J.; Goto, A.; Muto, H.

    2014-05-09

    The lecture includes two parts: One is a discussion on the technology for developing RIB beam facility based on the in-flight method and relevant experimental technology. The second part is a discussion on experimental efforts for studying the breakout process from the pp-chain region based on recent works with low energy RI beams. The discussion of the second part specifically covers the problem of the vp-process in type II supernovae in terms of alpha cluster nature for the reactions.

  12. Cleavage maps for human cytomegalovirus DNA strain AD169 for restriction endonucleases EcoRI, BglII, and HindIII.

    PubMed Central

    Spector, D H; Hock, L; Tamashiro, J C

    1982-01-01

    We have used cloned EcoRI fragments of the human CMV (HCMV) genome, strain AD169, to prepare restriction endonuclease maps of the DNA. Individual 32P-labeled cloned fragments were hybridized to Southern blots of HCMV DNA cleaved to completion with the restriction endonucleases BglII and HindIII and cleaved partially with EcoRI. By determining which EcoRI fragments hybridized to the same band on a Southern blot, we were able to establish linkage groups. This information coupled with the data derived from digestion of the cloned fragments with the enzymes BglII and HindIII (Tamashiro et al., J. Virol. 42:547-557, 1982) provided the basis for the construction of detailed maps for the enzymes EcoRI, BglII, and HindIII. We also identified the EcoRI fragments derived from the termini of this genome and mapped them with respect to the BglII and HindIII terminal fragments. From our mapping data, we conclude that the genome of HCMV is approximately 240 kilobases in length and is divided into long (198 kilobases) and short (42 kilobases) regions. Both regions consist of a unique sequence bounded by inverted repeats (11 to 12 kilobases for the long region and 2 to 3 kilobases for the short region). Furthermore, the long and short regions can invert relative to each other. Images PMID:6283173

  13. Computational modeling of the Fc αRI receptor binding in the Fc α domain of the human antibody IgA: Normal Modes Analysis (NMA) study

    NASA Astrophysics Data System (ADS)

    Jayasinghe, Manori; Posgai, Monica; Tonddast-Navaei, Sam; Ibrahim, George; Stan, George; Herr, Andrew; George Stan Group Collaboration; Herr's Group Team

    2014-03-01

    Fc αRI receptor binding in the Fc α domain of the antibody IgA triggers immune effector responses such as phagocytosis and antibody-dependent cell-mediated cytotoxicity in eukaryotic cells. Fc α is a dimer of heavy chains of the IgA antibody and each Fc α heavy chain which consisted of two immunoglobulin constant domains, CH2 and CH3, can bind one Fc αRI molecule at the CH2-CH3 interface forming a 2:1 stoichiometry. Experimental evidences confirmed that Fc αRI binding to the Fc α CH2-CH3 junction altered the kinetics of HAA lectin binding at the distant IgA1 hinge. Our focus in this research was to understand the conformational changes and the network of residues which co-ordinate the receptor binding dynamics of the Fc α dimer complex. Structure-based elastic network modeling was used to compute normal modes of distinct Fc α configurations. Asymmetric and un-liganded Fc α configurations were obtained from the high resolution crystal structure of Fc α-Fc αRI 2:1 symmetric complex of PDB ID 1OW0. Our findings confirmed that Fc αRI binding, either in asymmetric or symmetric complex with Fc α, propagated long-range conformational changes across the Fc domains, potentially also impacting the distant IgA1 hinge.

  14. 8-Oxoguanine Affects DNA Backbone Conformation in the EcoRI Recognition Site and Inhibits Its Cleavage by the Enzyme

    PubMed Central

    Kiryutin, Alexey S.; Kasymov, Rustem D.; Petrova, Darya V.; Endutkin, Anton V.; Popov, Alexander V.; Yurkovskaya, Alexandra V.; Fedechkin, Stanislav O.; Brockerman, Jacob A.; Zharkov, Dmitry O.; Smirnov, Serge L.

    2016-01-01

    8-oxoguanine is one of the most abundant and impactful oxidative DNA lesions. However, the reasons underlying its effects, especially those not directly explained by the altered base pairing ability, are poorly understood. We report the effect of the lesion on the action of EcoRI, a widely used restriction endonuclease. Introduction of 8-oxoguanine inside, or adjacent to, the GAATTC recognition site embedded within the Drew—Dickerson dodecamer sequence notably reduced the EcoRI activity. Solution NMR revealed that 8-oxoguanine in the DNA duplex causes substantial alterations in the sugar—phosphate backbone conformation, inducing a BI→BII transition. Moreover, molecular dynamics of the complex suggested that 8-oxoguanine, although does not disrupt the sequence-specific contacts formed by the enzyme with DNA, shifts the distribution of BI/BII backbone conformers. Based on our data, we propose that the disruption of enzymatic cleavage can be linked with the altered backbone conformation and dynamics in the free oxidized DNA substrate and, possibly, at the protein—DNA interface. PMID:27749894

  15. BIPM comparison BIPM.RI(II)-K1.Th-228 of activity measurements of the radionuclide 228Th

    NASA Astrophysics Data System (ADS)

    Michotte, C.; Ratel, G.; Courte, S.; Lucas, L.; Kossert, K.; Nähle, O.; Ott, O.

    2016-01-01

    Since 1986, two national metrology institutes (NMI) have submitted two samples of known activity of 228Th to the International Reference System (SIR) for activity comparison at the Bureau International des Poids et Mesures (BIPM), with comparison identifier BIPM.RI(II)-K1.Th-228. The values of the activity submitted were about 300 kBq and 2 MBq. A key comparison reference value (KCRV) has been evaluated for the first time for 228Th. There is only one result remaining in the BIPM.RI(II)-K1.Th-228 comparison, the 1986 NIST result being outdated. The degrees of equivalence between each equivalent activity measured in the SIR and the KCRV have been calculated and the results are given in the form of a table. A graphical presentation is also given. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  16. Single-Cell Measurements of IgE-Mediated FcεRI Signaling Using an Integrated Microfluidic Platform

    SciTech Connect

    Liu, Yanli; Barua, Dipak; Liu, Peng; Wilson, Bridget S.; Oliver, Janet M.; Hlavacek, William S.; Singh, Anup K.

    2013-03-27

    Heterogeneity in responses of cells to a stimulus, such as a pathogen or allergen, can potentially play an important role in deciding the fate of the responding cell population and the overall systemic response. Measuring heterogeneous responses requires tools capable of interrogating individual cells. Cell signaling studies commonly do not have single-cell resolution because of the limitations of techniques used such as Westerns, ELISAs, mass spectrometry, and DNA microarrays. Microfluidics devices are increasingly being used to overcome these limitations. In this paper, we report on a microfluidic platform for cell signaling analysis that combines two orthogonal single-cell measurement technologies: on-chip flow cytometry and optical imaging. The device seamlessly integrates cell culture, stimulation, and preparation with downstream measurements permitting hands-free, automated analysis to minimize experimental variability. The platform was used to interrogate IgE receptor (FcεRI) signaling, which is responsible for triggering allergic reactions, in RBL-2H3 cells. Following on-chip crosslinking of IgE-FcεRI complexes by multivalent antigen, we monitored signaling events including protein phosphorylation, calcium mobilization and the release of inflammatory mediators. The results demonstrate the ability of our platform to produce quantitative measurements on a cell-by-cell basis from just a few hundred cells. Finally, model-based analysis of the Syk phosphorylation data suggests that heterogeneity in Syk phosphorylation can be attributed to protein copy number variations, with the level of Syk phosphorylation being particularly sensitive to the copy number of Lyn.

  17. A new fission-fragment detector to complement the CACTUS-SiRi setup at the Oslo Cyclotron Laboratory

    NASA Astrophysics Data System (ADS)

    Tornyi, T. G.; Görgen, A.; Guttormsen, M.; Larsen, A. C.; Siem, S.; Krasznahorkay, A.; Csige, L.

    2014-02-01

    An array of Parallel Plate Avalanche Counters (PPAC) for the detection of heavy ions has been developed. The new device, NIFF (Nuclear Instrument for Fission Fragments), consists of four individual detectors and covers 60% of 2π. It was designed to be used in conjunction with the SiRi array of ΔE-E silicon telescopes for light charged particles and fits into the CACTUS array of 28 large-volume NaI scintillation detectors at the Oslo Cyclotron Laboratory. The low-pressure gas-filled PPACs are sensitive for the detection of fission fragments, but are insensitive to scattered beam particles of light ions or light-ion ejectiles. The PPAC detectors of NIFF have good time resolution and can be used either to select or to veto fission events in in-beam experiments with light-ion beams and actinide targets. The powerful combination of SiRi, CACTUS, and NIFF provides new research opportunities for the study of nuclear structure and nuclear reactions in the actinide region. The new setup is particularly well suited to study the competition of fission and γ decay as a function of excitation energy.

  18. Universal Slow RI-Beam Facility at RIKEN RIBF for Laser Spectroscopy of Short-Lived Nuclei

    SciTech Connect

    Wada, M.; Takamine, A.; Okada, K.; Sonoda, T.; Schury, P.; Kanai, Y.; Kojima, T. M.; Lioubimov, V.; Yamazaki, Y.; Yoshida, A.; Kubo, T.; Iimura, H.; Katayama, I.; Ohtani, S.; Wollnik, H.; Schuessler, H. A.

    2009-03-17

    A universal slow RI-beam facility (SLOWRI) for precision atomic spectroscopy is being built at the RIKEN RI-beam factory. The facility will provide a wide variety of low-energy nuclear ions of all elements produced by projectile fragmentation of high-energy heavy-ion beams and thermalized by an RF-carpet ion guide. At prototype SLOWRI, radioactive Be isotope ions produced at 1 GeV were decelerated and cooled in an ion trap down to 1 {mu}eV by employing laser cooling. The ground state hyperfine structures of {sup 7}Be{sup +} and {sup 11}Be{sup +} were measured accurately by laser microwave double resonance spectroscopy. Measurements of the S{sub 1/2}{yields}P{sub 1/2}, P{sub 3/2} transition frequencies of {sup 7,9,10,11}Be{sup +} ions are also in progress aiming at the study of the nuclear charge radii. Other possible experiment at SLOWRI, such as mass spectroscopy, are also discussed.

  19. Single-Cell Measurements of IgE-Mediated FcεRI Signaling Using an Integrated Microfluidic Platform

    PubMed Central

    Liu, Yanli; Barua, Dipak; Liu, Peng; Wilson, Bridget S.; Oliver, Janet M.; Hlavacek, William S.; Singh, Anup K.

    2013-01-01

    Heterogeneity in responses of cells to a stimulus, such as a pathogen or allergen, can potentially play an important role in deciding the fate of the responding cell population and the overall systemic response. Measuring heterogeneous responses requires tools capable of interrogating individual cells. Cell signaling studies commonly do not have single-cell resolution because of the limitations of techniques used such as Westerns, ELISAs, mass spectrometry, and DNA microarrays. Microfluidics devices are increasingly being used to overcome these limitations. Here, we report on a microfluidic platform for cell signaling analysis that combines two orthogonal single-cell measurement technologies: on-chip flow cytometry and optical imaging. The device seamlessly integrates cell culture, stimulation, and preparation with downstream measurements permitting hands-free, automated analysis to minimize experimental variability. The platform was used to interrogate IgE receptor (FcεRI) signaling, which is responsible for triggering allergic reactions, in RBL-2H3 cells. Following on-chip crosslinking of IgE-FcεRI complexes by multivalent antigen, we monitored signaling events including protein phosphorylation, calcium mobilization and the release of inflammatory mediators. The results demonstrate the ability of our platform to produce quantitative measurements on a cell-by-cell basis from just a few hundred cells. Model-based analysis of the Syk phosphorylation data suggests that heterogeneity in Syk phosphorylation can be attributed to protein copy number variations, with the level of Syk phosphorylation being particularly sensitive to the copy number of Lyn. PMID:23544131

  20. DNA Concentration-Dependent Dissociation of EcoRI: Direct Transfer or Reaction during Hopping

    PubMed Central

    Sidorova, Nina Y.; Scott, Thomas; Rau, Donald C.

    2013-01-01

    Direct transfer of proteins between DNA helices is a recognized important feature of the recognition site search process. Direct transfer is characterized by a dissociation rate that depends on total DNA concentration. This is taken as evidence for the formation of an intermediate DNA-protein-DNA ternary complex. We find that the dissociation rate of EcoRI-DNA-specific complexes at 80 mM NaCl depends on the concentration of competitor oligonucleotide suggesting that direct transfer contributes to EcoRI dissociation. This dependence on competitor DNA concentration is not seen at 180 mM salt. A careful examination of the salt concentration dependence of the dissociation rate, however, shows that the predictions for the formation of a ternary complex are not observed experimentally. The findings can be rationalized by considering that just after dissociating from a DNA fragment the protein remains in close proximity to that fragment, can reassociate with it, and diffuse back to the recognition site rather than bind to an oligonucleotide in solution, a hopping excursion. The probability that a protein will bind to an oligonucleotide during a hop can be approximately calculated and shown to explain the data. A dependence of the dissociation rate of a DNA-protein complex on competitor DNA concentration does not necessarily mean direct transfer. PMID:23528089

  1. A Lanthipeptide-like N-Terminal Leader Region Guides Peptide Epimerization by Radical SAM Epimerases: Implications for RiPP Evolution.

    PubMed

    Fuchs, Sebastian W; Lackner, Gerald; Morinaka, Brandon I; Morishita, Yohei; Asai, Teigo; Riniker, Sereina; Piel, Jörn

    2016-09-26

    Ribosomally synthesized and posttranslationally modified peptide natural products (RiPPs) exhibit diverse structures and bioactivities and are classified into distinct biosynthetic families. A recently reported family is the proteusins, with the prototype members polytheonamides being generated by almost 50 maturation steps, including introduction of d-residues at multiple positions by an unusual radical SAM epimerase. A region in the protein-like N-terminal leader of proteusin precursors is identified that is crucial for epimerization. It resembles a precursor motif previously shown to mediate interaction in thioether bridge-formation in class I lanthipeptide biosynthesis. Beyond this region, similarities were identified between proteusin and further RiPP families, including class I lanthipeptides. The data suggest that common leader features guide distinct maturation types and that nitrile hydratase-like enzymes are ancestors of several RiPP classes.

  2. Structural insights into the interaction of human IgG1 with FcγRI: no direct role of glycans in binding

    PubMed Central

    Oganesyan, Vaheh; Mazor, Yariv; Yang, Chunning; Cook, Kimberly E.; Woods, Robert M.; Ferguson, Andrew; Bowen, Michael A.; Martin, Tom; Zhu, Jie; Wu, Herren; Dall’Acqua, William F.

    2015-01-01

    The three-dimensional structure of a human IgG1 Fc fragment bound to wild-type human FcγRI is reported. The structure of the corresponding complex was solved at a resolution of 2.4 Å using molecular replacement; this is the highest resolution achieved for an unmutated FcγRI molecule. This study highlights the critical structural and functional role played by the second extracellular subdomain of FcγRI. It also explains the long-known major energetic contribution of the Fc ‘LLGG’ motif at positions 234–237, and particularly of Leu235, via a ‘lock-and-key’ mechanism. Finally, a previously held belief is corrected and a differing view is offered on the recently proposed direct role of Fc carbohydrates in the corresponding interaction. Structural evidence is provided that such glycan-related effects are strictly indirect. PMID:26527150

  3. N-Formyl-Methionyl-Leucyl-Phenylalanine Inhibits both Gamma Interferon- and Interleukin-10-Induced Expression of FcγRI on Human Monocytes

    PubMed Central

    Beigier-Bompadre, Macarena; Barrionuevo, Paula; Alves-Rosa, Fernanda; Rubel, Carolina J.; Palermo, Marina S.; Isturiz, Martín A.

    2001-01-01

    Three different classes of receptors for the Fc portion of immunoglobulin G (FcγRs), FcγRI, FcγRII, and FcγRIII, have been identified on human leukocytes. One of them, FcγRI, is a high-affinity receptor capable of induction of functions that include phagocytosis, respiratory burst, antibody-dependent cell-mediated cytotoxicity (ADCC), and secretion of cytokines. This receptor is expressed on mononuclear phagocytes, and this expression is regulated by cytokines and hormones such as gamma interferon (IFN-γ), IFN-β, interleukin-10 (IL-10), and glucocorticoids. We have recently demonstrated that the chemotactic peptide N-formyl-methionyl-leucyl-phenylalanine (FMLP) is capable of inducing a time-dependent downregulation of both FcγRIIIB and FcγRII in human neutrophils, altering FcγR-dependent functions. Considering the biological relevance of the regulation of FcγRI, we investigated the effect of FMLP on the overexpression of FcγRI induced by both IFN-γ and IL-10 on human monocytes. We demonstrate that FMLP significantly abrogated IFN-γ- and IL-10-induced FcγRI expression, although its basal level of expression was not altered. However, other IFN-γ-mediated effects such as the overexpression of the major histocompatibility complex class II antigens and the enhancement of lipopolysaccharide-induced secretion of tumor necrosis factor alpha were not affected by FMLP treatment. The formyl peptide completely inhibited the IFN-γ- and IL-10-induced enhancement of ADCC and phagocytosis carried out by adherent cells. The inhibitory effect of FMLP on FcγRI upregulation could exert an important regulatory effect during the evolution of bacterial infections. PMID:11238229

  4. Coordinate expression of AOS genes and JA accumulation: JA is not required for initiation of closing layer in wound healing tubers

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wounding induces a series of coordinated physiological responses essential for protection and healing of the damaged tissue. Wound-induced formation of jasmonic acid (JA) is important in defense responses in leaves, but comparatively little is known about the induction of JA biosynthesis and its ro...

  5. OROCHI experiment: Laser spectroscopy of RI atoms in superfluid helium for measurements of nuclear spins and electromagnetic moments

    NASA Astrophysics Data System (ADS)

    Furukawa, Takeshi

    2014-09-01

    We have been developing a new laser spectroscopy technique named as OROCHI (Optical RI-atom Observation in Condensed Helium as Ion-catcher) for measurements of nuclear spins and electromagnetic moments of low yield exotic radioisotopes (RIs). In this technique, we use superfluid helium (He II) liquid as a stopping material of RI beam in which in-situ laser spectroscopy of the RI atoms stopped in He II is carried out. The characteristic features of He II, i.e. high trapping efficiency of He II liquid for accelerated ion beams and the characteristics of atomic spectra in He II, enables us to measure the nuclear spins and moments of the extremely low yield RIs. So far, we have demonstrated the feasibility of our method to deduce the nuclear spins and moments with stable Rb, Cs, Ag and Au isotopes supplied into He II by laser sputtering technique. In addition, we have also succeeded in observing laser-radiowave/microwave double resonance signals of 84-87Rb atoms injected into He II as energetic ion beam. In these on-line experiment, the 84-87Rb isotope beams (intensity: up to 105 particles/s) were provided with RIPS beamline in RIKEN, and introduced into He II filled in a cryostat. Special care was taken in controlling the stopping position of injected Rb isotopes. Aluminum energy degraders of varied thickness from 0 to 0.8 mm were placed upstream of the beam injection window of the He II cryostat for optimizing the stopping position The 84-87Rb atoms stopped and then neutralized in He II were optically pumped and polarized with circularly polarized pumping laser light whose wavelength were tuned to 780 nm, D1 absorption line of Rb atoms in He II. The polarized atoms were subjected to irradiation of radiowave or microwave, and then we demonstrated the double resonance spectroscopy for observing the Zeeman transition of 84-87Rb atoms and the hyperfine transition of 87Rb, respectively In this presentation we will show the details of OROCHI technique and the present

  6. Perturbation of DNA hairpins containing the EcoRI recognition site by hairpin loops of varying size and composition: physical (NMR and UV) and enzymatic (EcoRI) studies.

    PubMed Central

    Germann, M W; Kalisch, B W; Lundberg, P; Vogel, H J; van de Sande, J H

    1990-01-01

    We have investigated loop-induced structural perturbation of the stem structure in hairpins d(GAATTCXnGAATTC) (X = A, T and n = 3, 4, 5 and 6) that contain an EcoRI restriction site in close proximity to the hairpin loop. Oligonucleotides containing either a T3 or a A3 loop were not hydrolyzed by the restriction enzyme and also showed only weak binding to EcoRI in the absence of the cofactor Mg2+. In contrast, hairpins with larger loops are hydrolyzed by the enzyme at the scission site next to the loop although the substrate with a A4 loop is significantly more resistant than the oligonucleotide containing a T4 loop. The hairpin structures with 3 loop residues were found to be thermally most stable while larger hairpin loops resulted in structures with lower melting temperatures. The T-loop hairpins are thermally more stable than the hairpins containing the same number of A residues in the loop. As judged from proton NMR spectroscopy and the thermodynamic data, the base pair closest to the hairpin loop did form in all cases studied. The hairpin loops did, however, affect the conformation of the stem structure of the hairpins. From 31P and 1H NMR spectroscopy we conclude that the perturbation of the stem structure is stronger for smaller hairpin loops and that the extent of the perturbation is limited to 2-3 base pairs for hairpins with T3 or A4 loops. Our results demonstrate that hairpin loops modulate the conformation of the stem residues close to the loop and that this in turn reduces the substrate activity for DNA sequence specific proteins. Images PMID:2326190

  7. Malachite green bioremoval by a newly isolated strain Citrobacter sedlakii RI11; enhancement of the treatment by biosurfactant addition.

    PubMed

    Mnif, Inès; Fendri, Raouia; Ghribi, Dhouha

    2015-01-01

    Citrobacter sedlackii RI11, isolated from acclimated textile effluent after selective enrichment on synthetic dyes, was assessed for malachite green (MG) biotreatment potency. Results indicate that this bacterium has potential for use in effective treatment of MG contaminated wastewaters under shaking conditions at neutral and alkaline pH value, characteristic of typical textile effluents. Also, the newly isolated strain can tolerate higher doses of dye and decolorize up to 1,000 mg/l of dye. When used as microbial surfactant to enhance MG biodecolorization, Bacillus subtilis SPB1-derived lipopeptide accelerated the decolorization rate and maximized the decolorization efficiency at an optimal concentration of biosurfactant of about 0.075%. Studies ensured that MG removal by this strain could be due to biodegradation and/or adsorption. Results on germination potencies of different seeds using the treated dyes under different conditions favor the use of SPB1 biosurfactant for the treatment of MG. PMID:26465297

  8. Single-particle tracking of immunoglobulin E receptors (FcεRI) in micron-sized clusters and receptor patches.

    PubMed

    Spendier, Kathrin; Lidke, Keith A; Lidke, Diane S; Thomas, James L

    2012-02-17

    When mast cells contact a monovalent antigen-bearing fluid lipid bilayer, IgE-loaded FcεRI receptors aggregate at contact points and trigger degranulation and the release of immune activators. We used two-color total internal reflection fluorescence microscopy and single-particle tracking to show that most fluorescently labeled receptor complexes diffuse freely within these micron-size clusters, with a diffusion coefficient comparable to free receptors in resting cells. At later times, when the small clusters coalesce to form larger patches, receptors diffuse even more rapidly. In all cases, Monte Carlo diffusion simulations ensured that the tracking results were free of bias, and distinguished biological from statistical variation. These results show the diversity in receptor mobility in mast cells, demonstrating at least three distinct states of receptor diffusivity.

  9. Tespa1 negatively regulates FcεRI-mediated signaling and the mast cell–mediated allergic response

    PubMed Central

    Zheng, Mingzhu; Qiu, Yuanjun; Guo, Chuansheng; Ji, Jian; Lei, Lei; Zhang, Xue; Liang, Jingjing; Lou, Jun; Huang, Wei; Dong, Bowen; Wu, Songquan; Wang, Jianli; Ke, Yuehai; Cao, Xuetao; Zhou, Yi Ting

    2014-01-01

    Antigen-mediated cross-linking of IgE on mast cells triggers a signaling cascade that results in their degranulation and proinflammatory cytokine production, which are key effectors in allergic reactions. We show that the activation of mast cells is negatively regulated by the newly identified adaptor protein Tespa1. Loss of Tespa1 in mouse mast cells led to hyper-responsiveness to stimulation via FcεRI. Mice lacking Tespa1 also displayed increased sensitivity to IgE-mediated allergic responses. The dysregulated signaling in KO mast cells was associated with increased activation of Grb2-PLC-γ1-SLP-76 signaling within the LAT1 (linker for activation of T cells family, member 1) signalosome versus the LAT2 signalosome. Collectively, these findings show that Tespa1 orchestrates mast cell activation by tuning the balance of LAT1 and LAT2 signalosome assembly. PMID:25422497

  10. Malachite green bioremoval by a newly isolated strain Citrobacter sedlakii RI11; enhancement of the treatment by biosurfactant addition.

    PubMed

    Mnif, Inès; Fendri, Raouia; Ghribi, Dhouha

    2015-01-01

    Citrobacter sedlackii RI11, isolated from acclimated textile effluent after selective enrichment on synthetic dyes, was assessed for malachite green (MG) biotreatment potency. Results indicate that this bacterium has potential for use in effective treatment of MG contaminated wastewaters under shaking conditions at neutral and alkaline pH value, characteristic of typical textile effluents. Also, the newly isolated strain can tolerate higher doses of dye and decolorize up to 1,000 mg/l of dye. When used as microbial surfactant to enhance MG biodecolorization, Bacillus subtilis SPB1-derived lipopeptide accelerated the decolorization rate and maximized the decolorization efficiency at an optimal concentration of biosurfactant of about 0.075%. Studies ensured that MG removal by this strain could be due to biodegradation and/or adsorption. Results on germination potencies of different seeds using the treated dyes under different conditions favor the use of SPB1 biosurfactant for the treatment of MG.

  11. ANTIOXIDANT PROPERTIES OF METHANOLIC EXTRACTS FROM THE SHOOTS AND ROOTS OF pRi-TRANSFORMED PLANTS OF REHMANNIA GLUTINOSA LIBOSCH.

    PubMed

    Piatczak, Ewelina; Dfbska, Marta; Kontek, Bogdan; Olas, Beata; Wysokinskai, Halina

    2016-01-01

    The antioxidant activity of methanolic extracts derived from shoots (HR-shoots) and roots (HR-roots) of pRi-transformed Rehmannia glutinosa plants were determined. The activity was indicated by the ability of the plant extracts to inhibit superoxide anion (O2(-·)) generation and thiobarbituric acid reactive substances (TBARS) production in resting blood platelets and platelets activated by thrombin. The strongest activity was exhibited by the HR-shoot extract (50 μg/mL). The present study also examines the antioxidant properties of the plant extracts against human plasma lipid peroxidation induced by strong biological oxidants: hydrogen peroxide (H2O2) and H2O2/Fe. The study shows that extracts from transformed R. glutinosa plants may be a promising source of natural antioxidants, which would be valuable in various cardiovascular diseases. The extracts may also protect lipids against oxidative modifications.

  12. ANTIOXIDANT PROPERTIES OF METHANOLIC EXTRACTS FROM THE SHOOTS AND ROOTS OF pRi-TRANSFORMED PLANTS OF REHMANNIA GLUTINOSA LIBOSCH.

    PubMed

    Piatczak, Ewelina; Dfbska, Marta; Kontek, Bogdan; Olas, Beata; Wysokinskai, Halina

    2016-01-01

    The antioxidant activity of methanolic extracts derived from shoots (HR-shoots) and roots (HR-roots) of pRi-transformed Rehmannia glutinosa plants were determined. The activity was indicated by the ability of the plant extracts to inhibit superoxide anion (O2(-·)) generation and thiobarbituric acid reactive substances (TBARS) production in resting blood platelets and platelets activated by thrombin. The strongest activity was exhibited by the HR-shoot extract (50 μg/mL). The present study also examines the antioxidant properties of the plant extracts against human plasma lipid peroxidation induced by strong biological oxidants: hydrogen peroxide (H2O2) and H2O2/Fe. The study shows that extracts from transformed R. glutinosa plants may be a promising source of natural antioxidants, which would be valuable in various cardiovascular diseases. The extracts may also protect lipids against oxidative modifications. PMID:27180436

  13. First test experiment to produce the slowed-down RI beam with the momentum-compression mode at RIBF

    NASA Astrophysics Data System (ADS)

    Sumikama, T.; Ahn, D. S.; Fukuda, N.; Inabe, N.; Kubo, T.; Shimizu, Y.; Suzuki, H.; Takeda, H.; Aoi, N.; Beaumel, D.; Hasegawa, K.; Ideguchi, E.; Imai, N.; Kobayashi, T.; Matsushita, M.; Michimasa, S.; Otsu, H.; Shimoura, S.; Teranishi, T.

    2016-06-01

    The 82Ge beam has been produced by the in-flight fission reaction of the 238U primary beam with 345 MeV/u at the RIKEN RI beam factory, and slowed down to about 15 MeV/u using the energy degraders. The momentum-compression mode was applied to the second stage of the BigRIPS separator to reduce the momentum spread. The energy was successfully reduced down to 13 ± 2.5 MeV/u as expected. The focus was not optimized at the end of the second stage, therefore the beam size was larger than the expectation. The transmission of the second stage was half of the simulated value mainly due to out of focus. The two-stage separation worked very well for the slowed-down beam with the momentum-compression mode.

  14. Single-Cell Measurements of IgE-Mediated FcεRI Signaling Using an Integrated Microfluidic Platform

    DOE PAGESBeta

    Liu, Yanli; Barua, Dipak; Liu, Peng; Wilson, Bridget S.; Oliver, Janet M.; Hlavacek, William S.; Singh, Anup K.

    2013-03-27

    Heterogeneity in responses of cells to a stimulus, such as a pathogen or allergen, can potentially play an important role in deciding the fate of the responding cell population and the overall systemic response. Measuring heterogeneous responses requires tools capable of interrogating individual cells. Cell signaling studies commonly do not have single-cell resolution because of the limitations of techniques used such as Westerns, ELISAs, mass spectrometry, and DNA microarrays. Microfluidics devices are increasingly being used to overcome these limitations. In this paper, we report on a microfluidic platform for cell signaling analysis that combines two orthogonal single-cell measurement technologies: on-chipmore » flow cytometry and optical imaging. The device seamlessly integrates cell culture, stimulation, and preparation with downstream measurements permitting hands-free, automated analysis to minimize experimental variability. The platform was used to interrogate IgE receptor (FcεRI) signaling, which is responsible for triggering allergic reactions, in RBL-2H3 cells. Following on-chip crosslinking of IgE-FcεRI complexes by multivalent antigen, we monitored signaling events including protein phosphorylation, calcium mobilization and the release of inflammatory mediators. The results demonstrate the ability of our platform to produce quantitative measurements on a cell-by-cell basis from just a few hundred cells. Finally, model-based analysis of the Syk phosphorylation data suggests that heterogeneity in Syk phosphorylation can be attributed to protein copy number variations, with the level of Syk phosphorylation being particularly sensitive to the copy number of Lyn.« less

  15. Stabilization of the restriction enzyme EcoRI dried with trehalose and other selected glass-forming solutes.

    PubMed

    Rossi, S; Buera, M P; Moreno, S; Chirife, J

    1997-01-01

    The stabilization of the restriction enzyme EcoRI by its incorporation into aqueous glass-forming carbohydrate or polymer solutions, followed by vacuum-drying to low moisture, has been studied. Glass-forming solutes included trehalose, sucrose, lactose, maltose, raffinose, maltodextrin DE 10, and poly(vinylpyrrolidone) (molecular weight 40,000, PVP). Among the solutes examined, trehalose and sucrose protected the enzyme most effectively during storage at 37 and 45 degrees C. The restriction enzyme dried with trehalose or sucrose maintained its activity without detectable loss for at least 20 days at 37 degrees C and 12 days at 45 degrees C. In contrast, the activity of the enzyme dried with maltodextrin or PVP was reduced during vacuum desiccation and also it decreased remarkably during storage at the same temperatures. Stored (37/45 degrees C) vacuum-dried trehalose and sucrose systems were either a dense paste or a very viscous syrup, and this indicated that they were not glassy. Moreover, no relationship was found between the glass transition temperatures (Tg) of the pure added solute and enzyme protection during storage, since, e.g., sucrose which has significantly lower Tg values protected the enzyme much better than either maltose, lactose, maltodextrin, or PVP. The trisaccharide raffinose offered good protection of enzyme activity, and its role as a novel excipient matrix for labile enzyme stabilization deserves further investigation. The stability of enzyme EcoRI was rapidly lost when the vacuum-dried trehalose and sucrose systems were humidified to 58% relative humidity and stored at 45 degrees C, and this was attributed to disaccharide crystallization.

  16. The European Sea Level Service (ESEAS) and the ESEAS Research Infrastructure (ESEAS-RI) project: An overview

    NASA Astrophysics Data System (ADS)

    Plag, H.-P.

    2003-04-01

    This abstract describes work carried out by the ESEAS and ESEAS-RI teams (to be found at http://www.eseas.org). The ESEAS started its work in June 2001 and has the major objective to provide sea-level and sea-level related information for the European waters to scientific and non-scientific users both from inside and outside Europe. The ESEAS aims to achieve this goal in cooperation with other relevant orgaanisations such as the PSMSL, EuroGOOS, GLOSS, EUREF and IGS. The ESEAS strives to guarantee and co-ordinate the long-term monitoring activities and data exchange along the entire European coastline. This includes, among others, tasks like setting up standards for observations and data processing, quality control of the large European database of hourly sea level data, upgrading of the ESEAS Observing Sites, collocation of tide gauges with CGPS, and provision of derived products such as secular trends and estimates of extremes. The EU-funded ESEAS-RI project started on 1 November 2002 with 25 institutions from 17 countries included. The project will run over three years and provides substantial resources for improving the observational network as well as the tools for exploitation of the data. In particular, Work Package (WP) 1 (Quality Control of Sea Level Observations) will make available a quality-controlled data set of hourly tide gauge from most ESEAS Observing sites. WP2 (Absolute sea level variations) will concentrate on the determination of vertical crustal motion at the ESEAS Observing sites. WP3 (Decadal to inter-decadal sea level variations) will produce as main result an empirical model of the sea level variations in the Eurepean Seas for the last hundred years. Finally, in the frame of WP4 (Improving the sea level observing system), a number of ESEAS Observing Sites will be upgraded and/or augmented with CGPS.

  17. A prototype of Virtual Observatory access for planetary data in the framework of Europlanet-RI/IDIS

    NASA Astrophysics Data System (ADS)

    Gangloff, M.; Cecconi, B.; Bourrel, N.; Jacquey, C.; Le Sidaner, P.; Berthier, J.; André, N.; Pallier, E.; Erard, S.; Aboudarham, J.; Chanteur, G. M.; Capria, M. T.; Khodachenko, M.; Manaud, N.; Schmidt, W.; Schmitt, B.; Topf, F.; Trautan, F.; Sarkissian, A.

    2011-12-01

    Europlanet RI is a four-year project supported by the European Union under the Seventh Framework Programme. Launched in January 2009, it is an Integrated Infrastructure Initiative, ie. A combination of Networking Activities, Transnational Access Activities and Joint Research Activities. The Networking Activities aim at further fostering a culture of cooperation in the field of Planetary Sciences. The objective of the Transnational Access Activities is to provide transnational access to a range of laboratory and field site facilities tailored to the needs of planetary research and on-line access to the available planetary science data, information and software tools, through the IDIS e-service. The overall aim of the Joint Research Activities (JRA) is to improve the services provided by the ensemble of Transnational Access Activities. In EuroPlaNet-RI, JRA4 must prepare essential tools for IDIS (Integrated and Distributed Information Service) allowing the planetary science community to interrogate some selected data centres, access and process data and visualize the results. This is the first step towards a Planetary Virtual Observatory. The first requirement for different data centres to be able to operate together collectively is adequate standardization. In particular a common description of data and services is essential. This is why the major part of JRA4/Task2 activity is focussing on data models, associated dictionnaries, and protocols to exchange queries. A specific data model is being developed for IDIS, associated with the PDAP protocol, a standard defined by the IPDA (International Planetary Data Alliance) The scope of this prototype is to demonstrate the capabilities of the IDIS Data Model, and the PDAP protocol to search and retrieve data in the wide topical planetology context.

  18. Long noncoding RNA lnc-RI is a new regulator of mitosis via targeting miRNA-210-3p to release PLK1 mRNA activity

    PubMed Central

    Wang, Zhi-Dong; Shen, Li-Ping; Chang, Cheng; Zhang, Xue-Qing; Chen, Zhong-Min; Li, Lin; Chen, Hong; Zhou, Ping-Kun

    2016-01-01

    Increasing evidence indicates that lncRNAs play critical roles in various biological processes, but many have not been functionally characterized. Here, we report a novel radiation-inducible lncRNA, namely lnc-RI which is essential for cell survival and appropriate mitotic progression. Our data indicated that knockdown of lnc-RI resulted in spindle abnormalities and mitotic arrest simultaneously with sharply decreased mRNA and protein expression of PLK1, a key regulator of mitosis. Our data demonstrated that PLK1 is a key downstream mediator of lnc-RI in regulating mitosis, whereby lnc-RI competitively bound to the negative PLK1 regulating miRNA, miRNA-210-p3. Taken together, we have identified lnc-RI as a new regulator of mitosis which acts by releasing PLK1 mRNA activity via competition for binding to miRNA-210-3p. PMID:27160062

  19. 77 FR 66190 - Submission for Review: It's Time To Sign Up for Direct Deposit or Direct Express, RI 38-128

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-02

    ... MANAGEMENT Submission for Review: It's Time To Sign Up for Direct Deposit or Direct Express, RI 38-128 AGENCY... agencies the opportunity to comment on a revised information collection request (ICR) 3206-0226, It's Time... Management. Title: It's Time To Sign Up for Direct Deposit or Direct Express. OMB Number:...

  20. 78 FR 19024 - Submission for Review: It's Time to Sign Up for Direct Deposit or Direct Express, RI 38-128

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-28

    ... Register on November 2, 2012, at Volume 77 FR 66190, allowing for a 60-day public comment period. No... MANAGEMENT Submission for Review: It's Time to Sign Up for Direct Deposit or Direct Express, RI 38-128 AGENCY... agencies the opportunity to comment on revised information collection request (ICR) 3206-0226, It's Time...

  1. SUMMARIES OF RESEARCH AND DEVELOPMENT ACTIVITIES PERFORMED IN RACINE R/I UNITS DURING THE 1966-67 SCHOOL YEAR. (TITLE SUPPLIED).

    ERIC Educational Resources Information Center

    QUILLING, MARY R.

    THE ACTIVITIES OF THE RACINE, WISCONSIN, R/I UNITS INCLUDED A CREATIVITY STUDY, LANGUAGE DEVELOPMENT EXPERIMENTS, TWO EXPERIMENTS IN INDIVIDUALIZING HANDWRITING, AN ANALYSIS OF THE EFFECTS OF INCREASED HOME-SCHOOL CONTACT ON PARENT ATTITUDE AND STUDENT ACHIEVEMENT, THREE EXPERIMENTS IN INDIVIDUALIZED ARITHMETIC INSTRUCTION, AND RESEARCH AND…

  2. Instability structures during periods of large Richardson number (Ri > 14): Evidence of parametric instability

    NASA Astrophysics Data System (ADS)

    Walterscheid, R. L.; Gelinas, L. J.; Hecht, J. H.; Liu, A. Z.

    2013-07-01

    commonly used criteria for shear and convective instabilities were developed for steady horizontally uniform background flows. However, the formalism that rigorously addresses the instability of waves on a basic state modulated by a primary wave is Floquet theory in which the basic state includes a wave. A Floquet system supports parametric instabilities when conventional Richardson number (Ri) criteria indicate that the system is stable. In a study of small-scale instability structures during the Maui MALT campaign, Hecht et al. (2005) noted that there were occurrences of ripple (instability) structure when the conventional criteria indicated stable conditions. We have followed up this work with a detailed survey of the occurrence of ripple structure over Maui during periods that were both stable and unstable according to conventional criteria. Values of Ri were calculated from lidar data. We have found frequent occurrence of ripple structure when Ri > 14. We have focused on a period when there are clear indications of waves and ripple structure exhibiting two-dimensional instability structure when Ri ~ 1 or greater. These results are analyzed in terms of Floquet theory and interpreted as parametric instabilities occurring for modest primary wave amplitudes.

  3. Cáncer de riñón (células renales)—Versión para profesionales de salud

    Cancer.gov

    Información del Instituto Nacional del Cáncer para profesionales de salud sobre el tratamiento del cáncer de riñón, así como referencias a estudios clínicos, investigación, estadísticas y otros temas relacionados con este tipo de cáncer.

  4. Alternaric acid stimulates phosphorylation of His-tagged RiCDPK2, a calcium-dependent protein kinase in potato plants.

    PubMed

    Hassan, A; Okuta, T; Kato, M; Hatsugai, N; Sano, Y; Ishimori, T; Okazaki, K; Doullah, M A; Shah, M M

    2012-08-16

    Calcium-dependent protein kinases (CDPK) are an essential component of plant defense mechanisms against pathogens. We investigated the effect of alternaric acid, a host-specific toxin produced by the plant fungal pathogen Alternaria solani (Pleosporaceae), on a putative plasma membrane and cytosolic kinase RiCDPK2 of potato (Solanum tuberosum) and on hypersensitive cell death of host potato cells. Alternaric acid, in the presence of Ca²⁺ and Mg²⁺, stimulated in vitro phosphorylation of His-tagged RiCDPK2, a Ca²⁺-dependent protein kinase found in potato plants. We concluded that Ca²⁺ and Mg²⁺ play an important role in the interaction between alternaric acid and RiCDPK2. Based on our observations, alternaric acid regulates RiCDPK2 kinase during the infection process in an interaction between host and A. solani, leading to the inhibition of hypersensitive cell death in the host. We suggest that alternaric acid is a primary determinant by which A. solani stimulates CDPK activity in the host, suppressing hypersensitive cell death.

  5. TLR4-Upregulated IL-1β and IL-1RI Promote Alveolar Macrophage Pyroptosis and Lung Inflammation through an Autocrine Mechanism

    PubMed Central

    He, Xingying; Qian, Yongbing; Li, Zhigang; Fan, Erica K.; Li, Yuehua; Wu, Liang; Billiar, Timothy R.; Wilson, Mark A.; Shi, Xueyin; Fan, Jie

    2016-01-01

    Acute lung injury (ALI) is a major component of multiple organ dysfunction syndrome (MODS) following pulmonary infection. Alveolar macrophages (AM) are at the center of the pathogenesis of the development of ALI. Interleukin-1β (IL-1β) is one of the key pro-inflammatory mediators, and its maturation is tightly controlled by the formation and activation of the inflammasome. The biological effects of IL-1β are mediated through IL-1 receptor (IL-1R). In this study, we investigated the influence of LPS-induced IL-1β release and IL-1RI upregulation on the development of lung inflammation. We demonstrated that in AM, LPS-TLR4 signaling not only activates Nlrp3 inflammasome activation and subsequent release of IL-1β, but also up-regulates IL-1RI expression on AM surface through MyD88 and NF-κB dependent signaling. The upregulated IL-1RI, therefore, sensitizes AM to IL-1β and results in pyroptosome formation, which in turn leads to AM pyroptosis, a type of caspase-1-dependent inflammatory cell death. We further showed that AM pyroptosis exaggerates lung inflammation. The present study demonstrates a novel mechanism underlying LPS-induced innate immunity; that is, a secondary upregulation of IL-1β-IL-1RI signaling is responsible for AM pyroptosis and augmented lung injury in response to LPS. PMID:27526865

  6. Cáncer de riñón (células renales)—Versión para pacientes

    Cancer.gov

    Información del Instituto Nacional del Cáncer sobre el tratamiento del cáncer de riñón, así como referencias a estudios clínicos, investigación, estadísticas y otros temas relacionados con este tipo de cáncer.

  7. Structural insights into the interaction of human IgG1 with FcγRI: no direct role of glycans in binding

    SciTech Connect

    Oganesyan, Vaheh Mazor, Yariv; Yang, Chunning; Cook, Kimberly E.; Woods, Robert M.; Ferguson, Andrew; Bowen, Michael A.; Martin, Tom; Zhu, Jie; Wu, Herren; Dall’Acqua, William F.

    2015-10-31

    In an effort to identify the critical structural features responsible for the high-affinity interaction of IgG1 Fc with FcγRI, the structure of the corresponding complex was solved at a resolution of 2.4 Å. The three-dimensional structure of a human IgG1 Fc fragment bound to wild-type human FcγRI is reported. The structure of the corresponding complex was solved at a resolution of 2.4 Å using molecular replacement; this is the highest resolution achieved for an unmutated FcγRI molecule. This study highlights the critical structural and functional role played by the second extracellular subdomain of FcγRI. It also explains the long-known major energetic contribution of the Fc ‘LLGG’ motif at positions 234–237, and particularly of Leu235, via a ‘lock-and-key’ mechanism. Finally, a previously held belief is corrected and a differing view is offered on the recently proposed direct role of Fc carbohydrates in the corresponding interaction. Structural evidence is provided that such glycan-related effects are strictly indirect.

  8. The mealybug Phenacoccus solenopsis suppresses plant defense responses by manipulating JA-SA crosstalk.

    PubMed

    Zhang, Peng-Jun; Huang, Fang; Zhang, Jin-Ming; Wei, Jia-Ning; Lu, Yao-Bin

    2015-03-20

    Induced plant defenses against herbivores are modulated by jasmonic acid-, salicylic acid-, and ethylene-signaling pathways. Although there is evidence that some pathogens suppress plant defenses by interfering with the crosstalk between different signaling pathways, such evidence is scarce for herbivores. Here, we demonstrate that the mealybug Phenacoccus solenopsis suppresses the induced defenses in tomato. We found that exogenous JA, but not SA, significantly decreased mealybug feeding time and reduced nymphal performance. In addition, constitutive activation of JA signaling in 35s::prosys plants reduced mealybug survival. These data indicate that the JA signaling pathway plays a key role in mediating the defense responses against P. solenopsis. We also found that mealybug feeding decreased JA production and JA-dependent defense gene expression, but increased SA accumulation and SA-dependent gene expression. In SA-deficient plants, mealybug feeding did not suppress but activated JA accumulation, indicating that the suppression of JA-regulated defenses depends on the SA signaling pathway. Mealybugs benefit from suppression of JA-regulated defenses by exhibiting enhanced nymphal performance. These findings confirm that P. solenopsis manipulates plants for its own benefits by modulating the JA-SA crosstalk and thereby suppressing induced defenses.

  9. The mealybug Phenacoccus solenopsis suppresses plant defense responses by manipulating JA-SA crosstalk

    PubMed Central

    Zhang, Peng-Jun; Huang, Fang; Zhang, Jin-Ming; Wei, Jia-Ning; Lu, Yao-Bin

    2015-01-01

    Induced plant defenses against herbivores are modulated by jasmonic acid-, salicylic acid-, and ethylene-signaling pathways. Although there is evidence that some pathogens suppress plant defenses by interfering with the crosstalk between different signaling pathways, such evidence is scarce for herbivores. Here, we demonstrate that the mealybug Phenacoccus solenopsis suppresses the induced defenses in tomato. We found that exogenous JA, but not SA, significantly decreased mealybug feeding time and reduced nymphal performance. In addition, constitutive activation of JA signaling in 35s::prosys plants reduced mealybug survival. These data indicate that the JA signaling pathway plays a key role in mediating the defense responses against P. solenopsis. We also found that mealybug feeding decreased JA production and JA-dependent defense gene expression, but increased SA accumulation and SA-dependent gene expression. In SA-deficient plants, mealybug feeding did not suppress but activated JA accumulation, indicating that the suppression of JA-regulated defenses depends on the SA signaling pathway. Mealybugs benefit from suppression of JA-regulated defenses by exhibiting enhanced nymphal performance. These findings confirm that P. solenopsis manipulates plants for its own benefits by modulating the JA-SA crosstalk and thereby suppressing induced defenses. PMID:25790868

  10. Activity measurements of the radionuclide 99mTc for the VNIIM, Russian Federation and ENEA-INMRI, Italy, in the ongoing comparison BIPM.RI(II)-K4.Tc-99m and KCRV update in the BIPM.RI(II)-K1.Tc-99m comparison

    NASA Astrophysics Data System (ADS)

    Michottea, C.; Nonisa, M.; Alekseevb, I. V.; Kharitonovb, I. A.; Tereshchenkob, E. E.; Zanevskiyb, A. V.; Capognic, M.; De Felicec, P.; Fazioc, A.; Carconic, P.

    2016-01-01

    In 2014, comparisons of activity measurements of 99mTc using the Transfer Instrument of the International Reference System (SIRTI) took place at the VNIIM (Russian Federation) and at the ENEA-INMRI (Italy), with comparison identifier BIPM.RI(II)-K4.Tc-99m. Ampoules containing about 32 kBq of 99mTc solutions were measured in the SIRTI for three half-lives. There are now nine results in the BIPM.RI(II)-K4.Tc-99m comparison. This comparison is linked to the BIPM.RI(II)-K1.Tc-99m comparison and the key comparison reference value (KCRV) of the BIPM.RI(II)-K1.Tc-99m has been updated to include eligible results from BIPM.RI(II)-K4.Tc-99m. The degrees of equivalence between each equivalent activity measured in the SIR or the SIRTI and the KCRV have been calculated and the results are given in the form of a table. A graphical presentation is also given. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  11. Leukocyte immunoglobulin-like receptor B4 regulates key signalling molecules involved in FcγRI-mediated clathrin-dependent endocytosis and phagocytosis

    PubMed Central

    Park, Mijeong; Raftery, Mark J.; Thomas, Paul S.; Geczy, Carolyn L.; Bryant, Katherine; Tedla, Nicodemus

    2016-01-01

    FcγRI cross-linking on monocytes may trigger clathrin-mediated endocytosis, likely through interaction of multiple intracellular molecules that are controlled by phosphorylation and dephosphorylation events. However, the identity of phospho-proteins and their regulation are unknown. We proposed the leukocyte immunoglobulin-like receptor B4 (LILRB4) that inhibits FcγRI-mediated cytokine production via Tyr dephosphorylation of multiple kinases, may also regulate endocytosis/phagocytosis through similar mechanisms. FcγRI and/or LILRB4 were antibody-ligated on THP-1 cells, lysates immunoprecipitated using anti-pTyr antibody and peptides sequenced by mass spectrometry. Mascot Search identified 25 Tyr phosphorylated peptides with high confidence. Ingenuity Pathway Analysis revealed that the most significantly affected pathways were clathrin-mediated endocytosis and Fc-receptor dependent phagocytosis. Tyr phosphorylation of key candidate proteins in these pathways included common γ-chain of the Fc receptors, Syk, clathrin, E3 ubiquitin protein ligase Cbl, hepatocyte growth factor-regulated tyrosine kinase substrate, tripartite motif-containing 21 and heat shock protein 70. Importantly, co-ligation of LILRB4 with FcγRI caused significant dephosphorylation of these proteins and was associated with suppression of Fc receptor-dependent uptake of antibody-opsonised bacterial particles, indicating that LILRB4. These results suggest that Tyr phosphorylation may be critical in FcγRI-dependent endocytosis/phagocytosis that may be regulated by LILRB4 by triggering dephosphorylation of key signalling proteins. PMID:27725776

  12. The bacteriophage WORiC is the active phage element in wRi of Drosophila simulans and represents a conserved class of WO phages

    PubMed Central

    2011-01-01

    Background The alphaproteobacterium Wolbachia pipientis, the most common endosymbiont in eukaryotes, is found predominantly in insects including many Drosophila species. Although Wolbachia is primarily vertically transmitted, analysis of its genome provides evidence for frequent horizontal transfer, extensive recombination and numerous mobile genetic elements. The genome sequence of Wolbachia in Drosophila simulans Riverside (wRi) is available along with the integrated bacteriophages, enabling a detailed examination of phage genes and the role of these genes in the biology of Wolbachia and its host organisms. Wolbachia is widely known for its ability to modify the reproductive patterns of insects. One particular modification, cytoplasmic incompatibility, has previously been shown to be dependent on Wolbachia density and inversely related to the titer of lytic phage. The wRi genome has four phage regions, two WORiBs, one WORiA and one WORiC. Results In this study specific primers were designed to distinguish between these four prophage types in wRi, and quantitative PCR was used to measure the titer of bacteriophages in testes, ovaries, embryos and adult flies. In all tissues tested, WORiA and WORiB were not found to be present in excess of their integrated prophages; WORiC, however, was found to be present extrachromosomally. WORiC is undergoing extrachromosomal replication in wRi. The density of phage particles was found to be consistent in individual larvae in a laboratory population. The WORiC genome is organized in conserved blocks of genes and aligns most closely with other known lytic WO phages, WOVitA and WOCauB. Conclusions The results presented here suggest that WORiC is the lytic form of WO in D. simulans, is undergoing extrachromosomal replication in wRi, and belongs to a conserved family of phages in Wolbachia. PMID:22085419

  13. Production cross section measurements of radioactive isotopes by BigRIPS separator at RIKEN RI Beam Factory

    NASA Astrophysics Data System (ADS)

    Suzuki, H.; Kubo, T.; Fukuda, N.; Inabe, N.; Kameda, D.; Takeda, H.; Yoshida, K.; Kusaka, K.; Yanagisawa, Y.; Ohtake, M.; Sato, H.; Shimizu, Y.; Baba, H.; Kurokawa, M.; Ohnishi, T.; Tanaka, K.; Tarasov, O. B.; Bazin, D.; Morrissey, D. J.; Sherrill, B. M.; Ieki, K.; Murai, D.; Iwasa, N.; Chiba, A.; Ohkoda, Y.; Ideguchi, E.; Go, S.; Yokoyama, R.; Fujii, T.; Nishimura, D.; Nishibata, H.; Momota, S.; Lewitowicz, M.; DeFrance, G.; Celikovic, I.; Steiger, K.

    2013-12-01

    We have measured the production rates and production cross sections for a variety of radioactive isotopes which were produced from 124Xe, 48Ca, and 238U beams at an energy of 345 MeV/nucleon using the BigRIPS separator at the RIKEN Nishina Center RI Beam Factory (RIBF). Proton-rich isotopes with atomic numbers Z = 40-52 and neutron-rich isotopes with Z = 5-16 were produced by projectile fragmentation of the 124Xe and 48Ca beam on Be targets, respectively. Neutron-rich isotopes with Z = 20-59 were produced by in-flight fission of the 238U beam, in which both Be and Pb were used as production targets. The measured production rates and production cross sections were compared with those of the LISE++ calculations, and overall fairly good agreement has been obtained. Furthermore, in the measurements with the 124Xe beam, we have discovered four new isotopes on the proton-drip line, 85,86Ru and 81,82Mo, and obtained the clear evidence that 103Sb is particle unbound with an upper limit of 49 ns for the half-life. The measurements of projectile-fragment momentum distributions have been also performed with the 124Xe beam, in which the low-momentum tails of the distributions have been measured for the first time at the energy of 345 MeV/nucleon.

  14. Rat fat-cells have three types of adenosine receptors (Ra, Ri and P). Differential effects of pertussis toxin.

    PubMed Central

    García-Sáinz, J A; Torner, M L

    1985-01-01

    Activation of rat adipocyte R1 adenosine receptors by phenylisopropyladenosine (PIA) decreased cyclic AMP and lipolysis; this effect was blocked in cells from pertussis-toxin-treated rats. In contrast, the ability of 2',5'-dideoxyadenosine to decrease cyclic AMP was not affected by pertussis-toxin treatment. Addition of adenosine deaminase to the medium in which adipocytes from control animals were incubated resulted in activation of lipolysis. Interestingly, adipocytes from toxin-treated rats (which had an already increased basal lipolysis) responded in an opposite fashion to the addition of adenosine deaminase, i.e. the enzyme decreased lipolysis, which suggested that adenosine might be increasing lipolysis in these cells. Studies with the selective agonists N-ethylcarboxamidoadenosine (NECA) and PIA indicated that adenosine increases lipolysis and cyclic AMP accumulation in these cells and that these actions are mediated through Ra adenosine receptors. Adenosine-mediated accumulation of cyclic AMP was also observed in cells preincubated with pertussis toxin (2 micrograms/ml) for 3 h. In these studies NECA was also more effective than PIA. Our results indicate that there are three types of adenosine receptors in fat-cells, whose actions are affected differently by pertussis toxin, i.e. Ri-mediated actions are abolished, Ra-mediated actions are revealed and P-mediated actions are not affected. PMID:3004405

  15. Interaction of berenil with the EcoRI dodecamer d(CGCGAATTCGCG) sub 2 in solution studied by NMR

    SciTech Connect

    Lane, A.N. ); Jenkins, T.C.; Neidle, S. ); Brown, T. )

    1991-02-05

    The conformation of the EcoRI dodecamer d(CGCGAATTCGCG){sub 2} has been examined in solution by {sup 1}H and {sup 31}P NMR. Spin-spin coupling constants and nuclear Overhauser (NOE) enhancement spectroscopy show that all deoxyriboses lie in the south domain, with a small admixture of the north conformation (0-20%). The time dependence of the nuclear Overhauser enhancements also reveals a relatively uniform conformation at the glycosidic bonds. The average helical twist is 36.5. Tilt angles are small, and roll angles are poorly determined. Both the NOE intensities and {sup 31}P relaxation data imply conformational anomalies at the C3-G4/C9-G10 and the A5-A6/T7-T8 steps. Berenil binds in 1:1 stoichiometry to the dodecamer with high affinity and causes substantial changes in chemical shifts of the sugar protons of nucleotides Ado 5-Cyt 9 and of the H2 resonances of the two Ado residues. NOEs are observed between the aromatic protons of berenil and the H1{prime} of both Thy 7 and Thy 8, as well as to Ado 5 and Ado 6 H2. These results firmly establish that berenil binds via the minor groove and closely approaches the nucleotides Ado 6, Thy 7, and Thy 8. Using the observed NOEs between the ligand and the DNA together with the derived glycosidic torsion angles, the authors have built models that satisfy all of the available solution data.

  16. Distribution and dynamics of rat basophilic leukemia immunoglobulin E receptors (FcepsilonRI) on planar ligand-presenting surfaces.

    PubMed

    Spendier, Kathrin; Carroll-Portillo, Amanda; Lidke, Keith A; Wilson, Bridget S; Timlin, Jerilyn A; Thomas, James L

    2010-07-21

    There is considerable interest in the signaling mechanisms of immunoreceptors, especially when triggered with membrane-bound ligands. We have quantified the spatiotemporal dynamics of the redistribution of immunoglobulin E-loaded receptors (IgE-FcepsilonRI) on rat basophilic leukemia-2H3 mast cells in contact with fluid and gel-phase membranes displaying ligands for immunoglobulin E, using total internal reflection fluorescence microscopy. To clearly separate the kinetics of receptor redistribution from cell spreading, and to precisely define the initial contact time (+/-50 ms), micropipette cell manipulation was used to bring individual cells into contact with surfaces. On ligand-free surfaces, there are micron-scale heterogeneities in fluorescence that likely reflect regions of the cell that are more closely apposed to the substrate. When ligands are present, receptor clusters form with this same size scale. The initial rate of accumulation of receptors into the clusters is consistent with diffusion-limited trapping with D approximately 10(-1) microm2/s. These results support the hypothesis that clusters form by diffusion to cell-surface contact regions. Over longer timescales (>10 s), individual clusters moved with both diffusive and directed motion components. The dynamics of the cluster motion is similar to the dynamics of membrane fluctuations of cells on ligand-free fluid membranes. Thus, the same cellular machinery may be responsible for both processes.

  17. Distribution and Dynamics of Rat Basophilic Leukemia Immunoglobulin E Receptors (FcɛRI) on Planar Ligand-Presenting Surfaces

    PubMed Central

    Spendier, Kathrin; Carroll-Portillo, Amanda; Lidke, Keith A.; Wilson, Bridget S.; Timlin, Jerilyn A.; Thomas, James L.

    2010-01-01

    Abstract There is considerable interest in the signaling mechanisms of immunoreceptors, especially when triggered with membrane-bound ligands. We have quantified the spatiotemporal dynamics of the redistribution of immunoglobulin E-loaded receptors (IgE-FcɛRI) on rat basophilic leukemia-2H3 mast cells in contact with fluid and gel-phase membranes displaying ligands for immunoglobulin E, using total internal reflection fluorescence microscopy. To clearly separate the kinetics of receptor redistribution from cell spreading, and to precisely define the initial contact time (±50 ms), micropipette cell manipulation was used to bring individual cells into contact with surfaces. On ligand-free surfaces, there are micron-scale heterogeneities in fluorescence that likely reflect regions of the cell that are more closely apposed to the substrate. When ligands are present, receptor clusters form with this same size scale. The initial rate of accumulation of receptors into the clusters is consistent with diffusion-limited trapping with D ∼10−1μm2/s. These results support the hypothesis that clusters form by diffusion to cell-surface contact regions. Over longer timescales (>10 s), individual clusters moved with both diffusive and directed motion components. The dynamics of the cluster motion is similar to the dynamics of membrane fluctuations of cells on ligand-free fluid membranes. Thus, the same cellular machinery may be responsible for both processes. PMID:20643056

  18. Cloning and sequencing of the Thermoanaerobacterium saccharolyticum B6A-RI apu gene and purification and characterization of the amylopullulanase from Escherichia coli.

    PubMed

    Ramesh, M V; Podkovyrov, S M; Lowe, S E; Zeikus, J G

    1994-01-01

    The amylopullulanase gene (apu) of the thermophilic anaerobic bacterium Thermoanaerobacterium saccharolyticum B6A-RI was cloned into Escherichia coli. The complete nucleotide sequence of the gene was determined. It encoded a protein consisting of 1,288 amino acids with a signal peptide of 35 amino acids. The enzyme purified from E. coli was a monomer with an M(r) of 142,000 +/- 2,000 and had same the catalytic and thermal characteristics as the native glycoprotein from T. saccharolyticum B6A. Linear alignment and the hydrophobic cluster analysis were used to compare this amylopullulanase with other amylolytic enzymes. Both methods revealed strictly conserved amino acid residues among these enzymes, and it is proposed that Asp-594, Asp-700, and Glu-623 are a putative catalytic triad of the T. saccharolyticum B6A-RI amylopullulanase.

  19. Carrier phases for iodine in the Allende meteorite and their associated Xe-129(r)/I-127 ratios - A laser microprobe study

    NASA Technical Reports Server (NTRS)

    Kirschbaum, C.

    1988-01-01

    This paper presents the results of a study of the carrier phases of iodine in the Allende meteorite and their associated Xe-129(r)/I-127 ratios, obtained using a new high-sensitivity low-blank mass spectrometer coupled with a low-blank laser extraction system. Two types of experiments were performed: a survey of the Xe-129(r) amounts in unirradiated specimens of fine-grained assemblages and individual coarse mineral grains, and a study of the relationship between chlorine and iodine in irradiated samples of the inclusions, in which the Xe-129(r)/I-127 ratios were determined for various minerals. As a by-product of these measurements, the Ar-40/Ar-39 ages were obtained along with some results on trapped Xe components. A schematic diagram of the new mass spectrometer system is included.

  20. Final report on COOMET.RI(II)-K2.Eu-152: Measurement of activity concentration of radionuclide Eu-152 in a solution (COOMET project no 423/RU/08)

    NASA Astrophysics Data System (ADS)

    Kharitonov, I. A.; Zanevsky, A. V.; Milevski, V.; Ivaniukovich, A.; Oropesa Verdecia, P.; Moreno León, Y.; Švec, A.

    2013-01-01

    The COOMET.RI(II)-K2.Eu-152 comparison of measurements of a standardized solution of Eu-152 has enabled the demonstration of the traceability to the SI of the national measurement standards of three national metrology institutes of the COOMET countries: BelGIM, CENTIS-DMR and SMU. The pilot laboratory is the D I Mendeleyev Institute for Metrology (VNIIM), which participated in the BIPM.RI(II)-K1.Eu-152 key comparison and will provide the link to evaluate the degrees of equivalence for these institutes. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  1. Chemical composition of the essential oil from Corsican Mentha aquatica--combined analysis by GC(RI), GC-MS and 13C NMR spectroscopy.

    PubMed

    Sutour, Sylvain; Tomi, Félix; Bradesi, Pascale; Casanova, Joseph

    2011-10-01

    The essential oil (EO) of M. aquatica L. growing wild in Corsica was isolated by dry vapor distillation and submitted to combined analysis by column chromatography over silica gel, GC(RI), GC-MS and 13C NMR spectroscopy. The composition was dominated byoxygenated monoterpenes and characterized by the occurrence of menthofuran (50.7%) as the major component. In parallel, seven laboratory-distilled oil samples isolated from individual plants collected in Corsica were analyzed by GC(RI) and 13C NMR spectroscopy. Onlyquantitative differences were observed between the samples. Beside the usual terpenes, various p-menthane lactones (mintlactone, isomintlactone, hydroxymintlactone, menthofurolactone and epimenthofurolactone) have been identified in all the oil samples.

  2. Lin- CD34hi CD117int/hi FcεRI+ cells in human blood constitute a rare population of mast cell progenitors.

    PubMed

    Dahlin, Joakim S; Malinovschi, Andrei; Öhrvik, Helena; Sandelin, Martin; Janson, Christer; Alving, Kjell; Hallgren, Jenny

    2016-01-28

    Mast cells are rare tissue-resident immune cells that are involved in allergic reactions, and their numbers are increased in the lungs of asthmatics. Murine lung mast cells arise from committed bone marrow-derived progenitors that enter the blood circulation, migrate through the pulmonary endothelium, and mature in the tissue. In humans, mast cells can be cultured from multipotent CD34(+) progenitor cells. However, a population of distinct precursor cells that give rise to mast cells has remained undiscovered. To our knowledge, this is the first report of human lineage-negative (Lin(-)) CD34(hi) CD117(int/hi) FcεRI(+) progenitor cells, which represented only 0.0053% of the isolated blood cells in healthy individuals. These cells expressed integrin β7 and developed a mast cell-like phenotype, although with a slow cell division capacity in vitro. Isolated Lin(-) CD34(hi) CD117(int/hi) FcεRI(+) blood cells had an immature mast cell-like appearance and expressed high levels of many mast cell-related genes as compared with human blood basophils in whole-transcriptome microarray analyses. Furthermore, serglycin, tryptase, and carboxypeptidase A messenger RNA transcripts were detected by quantitative reverse transcription-polymerase chain reaction. Altogether, we propose that the Lin(-) CD34(hi) CD117(int/hi) FcεRI(+) blood cells are closely related to human tissue mast cells and likely constitute an immediate precursor population, which can give rise to predominantly mast cells. Furthermore, asthmatics with reduced lung function had a higher frequency of Lin(-) CD34(hi) CD117(int/hi) FcεRI(+) blood mast cell progenitors than asthmatics with normal lung function.

  3. Variability in response to nicotine in the LSxSS RI strains: potential role of polymorphisms in alpha4 and alpha6 nicotinic receptor genes.

    PubMed

    Tritto, Theresa; Stitzel, Jerry A; Marks, Michael J; Romm, Elena; Collins, Allan C

    2002-04-01

    Several studies have shown that genetic factors influence the effects of nicotine on respiration, acoustic startle, Y-maze crosses and rears, heart rate and body temperature in the mouse. Recently, we identified restriction fragment length polymorphisms (RFLPs) associated with the alpha4 (Chrna4) and alpha6 (Chrna6) nicotinic cholinergic receptor genes in the recombinant inbred (RI) strains derived from the Long-Sleep (LS) and Short-Sleep (SS) mouse lines. The alpha4 polymorphism has been identified as a point-mutation at position 529 (threonine to alanine) and the alpha6 polymorphism has not yet been identified. The studies described here evaluated the potential role of these polymorphisms in regulating sensitivity to nicotine by constructing dose-response curves for the effects of nicotine on six responses in the LSxSS RI strains. The results obtained suggest that both of the polymorphisms may play a role in regulating variability in sensitivity to nicotine. Those RI strains carrying the LS-like alpha4 RFLP were significantly more sensitive to the effects of nicotine on Y-maze crosses and rears, temperature and respiration and were less sensitive to the effects of nicotine on acoustic startle than those strains carrying the SS-like alpha4 RFLP. Those RI strains carrying the LS-like alpha6 RFLP were more sensitive to the effects of nicotine on respiration and acoustic startle, and less sensitive to the effects of nicotine on Y-maze crosses than those strains carrying the SS-like alpha6 RFLP. These results suggest that genetically determined differences in sensitivity to nicotine may be explained, in part, by variability associated with at least two of the neuronal nicotinic receptor genes, alpha4 and alpha6.

  4. Focal adhesion molecule Kindlin-1 mediates activation of TGF-β signaling by interacting with TGF-βRI, SARA and Smad3 in colorectal cancer cells.

    PubMed

    Kong, Jinfeng; Du, Juan; Wang, Yunling; Yang, Mingzi; Gao, Jianchao; Wei, Xiaofan; Fang, Weigang; Zhan, Jun; Zhang, Hongquan

    2016-10-20

    Kindlin-1, an integrin-interacting protein, has been implicated in TGF-β/Smad3 signaling. However, the molecular mechanism underlying Kindlin-1 regulation of TGF-β/Smad3 signaling remains elusive. Here, we reported that Kindlin-1 is an important mediator of TGF-β/Smad3 signaling by showing that Kindlin-1 physically interacts with TGF-β receptor I (TβRI), Smad anchor for receptor activation (SARA) and Smad3. Kindlin-1 is required for the interaction of Smad3 with TβRI, Smad3 phosphorylation, nuclear translocation, and finally the activation of TGF-β/Smad3 signaling pathway. Functionally, Kindlin-1 promoted colorectal cancer (CRC) cell proliferation in vitro and tumor growth in vivo, and was also required for CRC cell migration and invasion via an epithelial to mesenchymal transition. Kindlin-1 was found to be increased with the CRC progression from stages I to IV. Importantly, raised expression level of Kindlin-1 correlates with poor outcome in CRC patients. Taken together, we demonstrated that Kindlin-1 promotes CRC progression by recruiting SARA and Smad3 to TβRI and thereby activates TGF-β/Smad3 signaling. Thus, Kindlin-1 is a novel regulator of TGF-β/Smad3 signaling and may also be a potential target for CRC therapeutics.

  5. Cloning and characterization of a highly reiterated 5.8-kilobase pair nucleolar EcoRI DNA fragment found in Novikoff hepatoma ascites cells.

    PubMed

    Parker, D L; Busch, H; Rothblum, L I

    1981-02-17

    The DNA of Novikoff hepatoma ascites cells was found to contain a 3.6-megadalton EcoRI restriction fragment, referred to as EcoRI fragment A (Parker et al., 1979). C0t analyses demonstrated an enrichment of fragment A sequences in Novikoff hepatoma genome relative to normal rat liver DNA. This fragment was cloned in lambda gtWES to determine its molecular structure and sequence organization. The DNA from a positive clone was labeled by nick translation and hybridized to a Southern blot of EcoRI digested Novikoff DNA. Distinct hybrids formed with the region corresponding to fragment A. The greater degree of hybridization to the nucleolar fraction suggested a nucleolar enrichment of fragment A. Fragment A has a PstI site approximately 300 base pairs from one terminus which was used to generate mono-5'-32P-labeled fragments. The larger PStI subfragment, 5500 base pairs, labeled at a single terminus, was used to evolve a restriction enzyme map. The 300 base pair fragment was partially sequenced, revealing the presence of a repetitive sequence "island", TT(GTCT)8(GAAT)5G-. C0t analysis, utilizing the purified clone as a probe, confirmed the enrichment of fragment A sequences in the tumor relative to the normal rat liver control.

  6. Maize MeJA-responsive proteins identified by high-resolution 2-DE PAGE.

    PubMed

    Zhang, Yuliang; Pennerman, Kayla K; Yang, Fengshan; Yin, Guohua

    2015-12-01

    Exogenous methyl jasmonate (MeJA) is well-known to induce plant defense mechanisms effective against a wide variety of insect and microbial pests. High-resolution 2-DE gel electrophoresis was used to discover changes in the leaf proteome of maize exposed to MeJA. We sequenced 62 MeJA-responsive proteins by tandem mass spectroscopy, and deposited the mass spectra and identities in the EMBL-EBI PRIDE repository under reference number PXD001793. An analysis and discussion of the identified proteins in relation to maize defense against Asian corn borer is published by Zhang et al. (2015) [1]. PMID:26509185

  7. The molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory: The DEC-RI-MP2 gradient.

    PubMed

    Bykov, Dmytro; Kristensen, Kasper; Kjærgaard, Thomas

    2016-07-14

    We report an implementation of the molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory (DEC-RI-MP2). The new DEC-RI-MP2 gradient method combines the precision control as well as the linear-scaling and massively parallel features of the DEC scheme with efficient evaluations of the gradient contributions using the RI approximation. We further demonstrate that the DEC-RI-MP2 gradient method is capable of calculating molecular gradients for very large molecular systems. A test set of supramolecular complexes containing up to 158 atoms and 1960 contracted basis functions has been employed to demonstrate the general applicability of the DEC-RI-MP2 method and to analyze the errors of the DEC approximation. Moreover, the test set contains molecules of complicated electronic structures and is thus deliberately chosen to stress test the DEC-RI-MP2 gradient implementation. Additionally, as a showcase example the full molecular gradient for insulin (787 atoms and 7604 contracted basis functions) has been evaluated. PMID:27421396

  8. The molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory: The DEC-RI-MP2 gradient

    NASA Astrophysics Data System (ADS)

    Bykov, Dmytro; Kristensen, Kasper; Kjærgaard, Thomas

    2016-07-01

    We report an implementation of the molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory (DEC-RI-MP2). The new DEC-RI-MP2 gradient method combines the precision control as well as the linear-scaling and massively parallel features of the DEC scheme with efficient evaluations of the gradient contributions using the RI approximation. We further demonstrate that the DEC-RI-MP2 gradient method is capable of calculating molecular gradients for very large molecular systems. A test set of supramolecular complexes containing up to 158 atoms and 1960 contracted basis functions has been employed to demonstrate the general applicability of the DEC-RI-MP2 method and to analyze the errors of the DEC approximation. Moreover, the test set contains molecules of complicated electronic structures and is thus deliberately chosen to stress test the DEC-RI-MP2 gradient implementation. Additionally, as a showcase example the full molecular gradient for insulin (787 atoms and 7604 contracted basis functions) has been evaluated.

  9. EURAMET supplementary comparison of the personal dose equivalent quantity for photon radiation: EURAMET.RI(I)-S5

    NASA Astrophysics Data System (ADS)

    Ankerhold, U.; Hupe, O.

    2012-01-01

    Comparison measurements among primary standard facilities are required to achieve quality assurance in the realization and transfer of the quantity of personal dose equivalent, Hp(10), for photon radiation by national standards laboratories. Although some bilateral comparisons for this quantity had already taken place, in May 2003 the Consultative Committee for Ionizing Radiation [CCRI(I)] decided that a EUROMET supplementary comparison would be appropriate and that primary standards laboratories from other Regional Metrology Organizations could participate. The first comparison of the radiation protection quantity Hp(10) with low energy x-rays started in January 2004 and was completed in December 2007. The comparison was piloted by the PTB as EUROMET project No. 738 known also as EUROMET.RI(I)-S5. The operation and results of the comparison are reported here. The transfer instrument consisted of a secondary standard ionization chamber and a complete electronic measuring device. The response of this transfer instrument in various photon reference fields (N-15 and 0°, N-20 and 45°, N-30 and 75°, N-60 and 0°, N-120 and 0°, radiation quality according to ISO 4037-1:1996 [1]) was compared. Measurements were made by participants in 17 countries: Austria, France, Czech Republic, Finland, Germany, Greece, Hungary, Norway, Portugal, Slovakia, Slovenia, Spain, Sweden, Switzerland, the Netherlands, the United Kingdom and by one international organization. The results obtained by most of the participants are consistent with the stated uncertainties. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  10. Stable isotope behavior during cave ice formation by water freezing in Scărişoara Ice Cave, Romania

    NASA Astrophysics Data System (ADS)

    PerşOiu, Aurel; Onac, Bogdan P.; Wynn, Jonathan G.; Bojar, Ana-Voica; Holmgren, Karin

    2011-01-01

    Recently, a series of studies have targeted the stable isotopic composition of cave ice as a possible source of paleoclimatic information, but none presented an explanation for the way in which the external climatic signal is transferred to cave ice. While the relation between the stable isotopic composition of precipitation and drip water can be relatively easily determined, a more complex problem arises, i.e., the possible alteration of the primary climatic signal recorded by the oxygen and hydrogen stable isotopes during the freezing of water to form cave ice. Here we report the results of the first detailed investigations of the oxygen and hydrogen stable isotope behavior during the formation of ice in Scărişoara Ice Cave. Samples of ice align on a straight line with a slope lower than 8 in a δ18O-δ2H plot, characteristic for ice formed by the freezing of water. A model is presented for the reconstruction of the initial isotopic composition of water, despite the complexity induced by kinetic effects during early stages of freezing. These results are consistent with ice that forms by the downward freezing of a stagnant pool of water, under kinetic conditions in the initial stages of the process, and isotopic equilibrium thereafter. As ice caves are described in many parts of the world, otherwise poorly represented in ice-based paleoclimatology, the results of this study could open a new direction in paleoclimatic research so that an array of significant paleoclimate data can be developed on the basis of their study.

  11. Acidic environment augments FcεRI-mediated production of IL-6 and IL-13 in mast cells

    SciTech Connect

    Kamide, Yosuke; Ishizuka, Tamotsu; Tobo, Masayuki; Tsurumaki, Hiroaki; Aoki, Haruka; Mogi, Chihiro; Nakakura, Takashi; Yatomi, Masakiyo; Ono, Akihiro; Koga, Yasuhiko; Sato, Koichi; Hisada, Takeshi; Dobashi, Kunio; Yamada, Masanobu; Okajima, Fumikazu

    2015-08-28

    Although blood pH is maintained in a narrow range of around pH 7.4 in living organisms, inflammatory loci are characterized by acidic conditions. Mast cells tend to reside close to the surface of the body in areas such as the mucosa and skin where they may be exposed to exogenous acids, and they play an important role in immune responses. However, little is known about the effects of extracellular acidification on the functions of mast cell. Here, we found that extracellular acidification increased the dinitrophenyl-conjugated human serum albumin (DNP-HSA)-induced production of interleukin (IL)-6 and IL-13 in MC/9 cells or bone marrow-derived mouse mast cells sensitized with anti-DNP IgE. Extracellular acidification also inhibited migration of MC/9 cells toward DNP-HSA. In addition, acidic pH stimulated antigen-induced activation of p38 mitogen-activated protein kinase (MAPK) and protein kinase B (Akt). These findings suggest that extracellular acidification augmented antigen/IgE-induced and FcεRI-mediated production of IL-6 and IL-13 in mast cells, and that this was associated with the enhancement of p38 MAPK and Akt activation. - Highlights: • Antigen-induced IL-6 and IL-13 production was augmented by acidic pH in mast cells. • Acidic pH-induced actions were associated with activation of p38 MAPK and Akt. • Inhibition of p38 MAPK and Akt attenuated cytokine responses to acidic pH. • Acidic pH effects are not attributable to actions of known proton-sensing GPCRs.

  12. TGF-β-RI Kinase Inhibitor SD-208 Reduces the Development and Progression of Melanoma Bone Metastases

    PubMed Central

    Mohammad, Khalid S.; Javelaud, Delphine; Fournier, Pierrick G. J.; Niewolna, Maria; McKenna, C. Ryan; Peng, Xiang H.; Duong, Vu; Dunn, Lauren K.; Mauviel, Alain; Guise, Theresa A.

    2010-01-01

    Melanoma often metastasizes to bone where it is exposed to high concentrations of TGF-β. Constitutive Smad signaling occurs in human melanoma. Because TGF-β promotes metastases to bone by several types of solid tumors including breast cancer, we hypothesized that pharmacologic blockade of the TGF-β signaling pathway may interfere with the capacity of melanoma cells to metastasize to bone. In this study, we tested the effect of a small molecule inhibitor of TGF-β receptor I kinase (TβRI), SD-208, on various parameters affecting the development and progression of melanoma, both in vitro and in a mouse model of human melanoma bone metastasis. In melanoma cell lines, SD-208 blocked TGF-β induction of Smad3 phosphorylation, Smad3/4-specific transcription, Matrigel invasion and expression of the TGF-β target genes PTHrP, IL-11, CTGF and RUNX2. To assess effects of SD-208 on melanoma development and metastasis, nude mice were inoculated with 1205Lu melanoma cells into the left cardiac ventricle and drug was administered by oral gavage on prevention or treatment protocols. SD-208 (60mg/kg/day), started 2 days before tumor inoculation prevented the development of osteolytic bone metastases compared with vehicle. In mice with established bone metastases, the size of osteolytic lesions was significantly reduced after 4 weeks treatment with SD-208 compared to vehicle-treated mice. Our results demonstrate that therapeutic targeting of TGF-β may prevent the development of melanoma bone metastases and decrease the progression of established osteolytic lesions. PMID:21084275

  13. Evaluation of SD-208, a TGF-β-RI Kinase Inhibitor, as an Anticancer Agent in Retinoblastoma.

    PubMed

    Fadakar, Puran; Akbari, Abolfazl; Ghassemi, Fariba; Mobini, Gholam Reza; Mohebi, Masoumeh; Bolhassani, Manzar; Abed Khojasteh, Hoda; Heidari, Mansour

    2016-06-01

    Retinoblastoma is the most common intraocular tumor in children resulting from genetic alterations and transformation of mature retinal cells. The objective of this study was to investigate the effects of SD-208, TGF-β-RI kinase inhibitor, on the expression of some miRNAs including a miR-17/92 cluster in retinoblastoma cells. Prior to initiate this work, the cell proliferation was studied by Methyl Thiazolyl Tetrazolium (MTT) and bromo-2'-deoxyuridine (BrdU) assays. Then, the expression patterns of four miRNAs (18a, 20a, 22, and 34a) were investigated in the treated SD-208 (0.0, 1, 2 and 3 µM) and untreated Y-79 cells. A remarkable inhibition of the cell proliferation was found in Y-79 cells treated with SD-208 versus untreated cells. Also, the expression changes were observed in miRNAs 18a, 20a, 22 and 34a in response to SD-208 treatment (P<0.05). The findings of the present study suggest that the anti-cancer effect of SD-208 may be exerted due to the regulation of specific miRNAs, at least in this particular retinoblastoma cell line. To the best of the researchers' knowledge, this is the first report demonstrating that the SD-208 could alter the expression of tumor suppressive miRNAs as well as oncomiRs in vitro. In conclusion, the present data suggest that SD-208 could be an alternative agent in retinoblastoma treatment. PMID:27306340

  14. Sugars profiles of different chestnut (Castanea sativa Mill.) and almond (Prunus dulcis) cultivars by HPLC-RI.

    PubMed

    Barreira, João C M; Pereira, José Alberto; Oliveira, M Beatriz P P; Ferreira, Isabel C F R

    2010-03-01

    Sugar profiles of different almond and chestnut cultivars were obtained by high-performance liquid chromatography (HPLC), by means of a refractive index (RI) detector. A solid-liquid extraction procedure was used in defatted and dried samples. The chromatographic separation was achieved using a Eurospher 100-5 NH(2) column using an isocratic elution with acetonitrile/water (70:30, v/v) at a flow rate of 1.0 ml/min. All the compounds were separated in 16 min. The method was optimized and proved to be reproducible and accurate. Generally, more than 95% of sugars were identified for both matrixes. Sugars profiles were quite homogeneous for almond cultivars; sucrose was the main sugar (11.46 +/- 0.14 in Marcona to 22.23 +/- 0.59 in Ferragnes g/100 g of dried weight), followed by raffinose (0.71 +/- 0.05 in Ferraduel to 2.11 +/- 0.29 in Duro Italiano), glucose (0.42 +/- 0.12 in Pegarinhos two seeded to 1.47 +/- 0.19 in Ferragnes) and fructose (0.11 +/- 0.02 in Pegarinhos two seeded to 0.59 +/- 0.05 in Gloriette). Commercial cultivars proved to have higher sucrose contents, except in the case of Marcona. Nevertheless, chestnut cultivars revealed a high heterogeneity. Sucrose was the main sugar in Aveleira (22.05 +/- 1.48), Judia (23.30 +/- 0.83) and Longal (9.56 +/- 0.91), while glucose was slightly prevalent in Boa Ventura (6.63 +/- 0.49). The observed variance could serve for inter-cultivar discrimination.

  15. Impact of Stratification on Summer Hypoxia in Narragansett Bay, RI: Time-Series Observations and Numerical Modeling

    NASA Astrophysics Data System (ADS)

    Bergondo, D. L.; Kincaid, C. R.; Kester, D. R.

    2003-12-01

    Determining water column structure in a partially-mixed estuary, such as Narragansett Bay, is important for understanding the impact stratification has on phytoplankton productivity and dissolved oxygen concentrations. Stratification reduces vertical mixing and influences the vertical flux of ecologically important variables such as phytoplankton, heat, oxygen, and nutrients. We utilize a combination of buoy data and numerical modeling to better understand processes surrounding the evolution and breakdown in stratification in Narragansett Bay for a range of environmental conditions. Autonomous sensors have been deployed in Narragansett Bay to collect continuous high temporal resolution chemical and hydrographic data. Data were collected every fifteen minutes 0.5 m below the surface and 1 m from the bottom from July 2001 to December 2001 and from July 2002 to December 2002 at two locations in Narragansett Bay and the Providence River, RI. The suite of water column variables measured were surface and bottom temperature, salinity, dissolved oxygen and pH, and surface chlorophyll. Results show that stratification events occur intermittently in the Providence River and Narragansett Bay and that increased phytoplankton productivity and hypoxia were associated with summertime stratification events. The Regional Ocean Modeling System (ROMS) model, a three-dimensional hydrodynamic model developed by Rutgers University, New Jersey, has been applied to Narragansett Bay to determine how the basic layered flow can be perturbed by runoff events and variable winds. For instance, in the basic stratified flow pattern in Narragansett Bay there is an outward flow of fresher water at the surface and an inward flow of deep denser water within the channel, however, strong south winds shutdown the deep return flow. Time series observations combined with model relationships have been able to enhance the understanding of the development and breakdown of stratification and the impact

  16. Continuous Dust Formation in SNe 2010jl and 2011ja

    NASA Astrophysics Data System (ADS)

    Krafton, Kelsie; Clayton, Geoffrey; Andrews, Jennifer; Barlow, Michael; De Looze, Ilse

    2016-08-01

    Studies in the last 10 years of dust formation in core-collapse supernovae (CCSNe) have found only small amounts, ~0.001 solar masses. This is far less than the amount needed to account for the large masses of dust seen in some high redshift galaxies. However, the recent discovery of ~1 solar mass of cold dust in the ejecta of SN 1987A has has caused a complete re-evaluation of dust formation in CCSNe. It has been suggested that the CCSNe are continuously forming dust so that by the time they are about 25 years old they will have dust masses similar to SN 1987A. However, there is a wide time gap between the CCSNe that have been studied recently and SN 1987A. We plan to use the sensitivity of Spitzer to detect dust emission from CCSNe 5 or more years after explosion. Radiative transfer models will be used to estimate the dust masses. This proposal is to continue our study of two interesting SNe 2010jl and 2011ja. These observations are part of a long term study requiring multiple epochs of Spitzer observations to look for evidence of continuous dust formation. These observations will help shed light on the mystery of dust in SN 1987A.

  17. Another JA/COI1-independent role of OPDA detected in tomato embryo development.

    PubMed

    Wasternack, Claus; Goetz, Stephan; Hellwege, Anja; Forner, Susanne; Strnad, Miroslav; Hause, Bettina

    2012-10-01

    Jasmonates (JAs) are ubiquitously occurring signaling compounds in plants formed in response to biotic and abiotic stress as well as in development. (+)-7-iso-jasmonoyl isoleucine, the bioactive JA, is involved in most JA-dependent processes mediated by the F-box protein COI1 in a proteasome-dependent manner. However, there is an increasing number of examples, where the precursor of JA biosynthesis, cis-(+)-12-oxophytodienoic acid (OPDA) is active in a JA/COI1-independent manner. Here, we discuss those OPDA-dependent processes, thereby giving emphasis on tomato embryo development. Recent data on seed coat-generated OPDA and its role in embryo development is discussed based on biochemical and genetic evidences. PMID:22895103

  18. Update from the Japanese Center for the Validation of Alternative Methods (JaCVAM).

    PubMed

    Kojima, Hajime

    2013-12-01

    The Japanese Center for the Validation of Alternative Methods (JaCVAM) was established in 2005 to promote the use of alternatives to animal testing in regulatory studies, thereby replacing, reducing, or refining the use of animals, according to the Three Rs principles. JaCVAM assesses the utility, limitations and suitability for use in regulatory studies, of test methods needed to determine the safety of chemicals and other materials. JaCVAM also organises and performs validation studies of new test methods, when necessary. In addition, JaCVAM co-operates and collaborates with similar organisations in related fields, both in Japan and internationally, which also enables JaCVAM to provide input during the establishment of guidelines for new alternative experimental methods. These activities help facilitate application and approval processes for the manufacture and sale of pharmaceuticals, chemicals, pesticides, and other products, as well as for revisions to standards for cosmetic products. In this manner, JaCVAM plays a leadership role in the introduction of new alternative experimental methods for regulatory acceptance in Japan. PMID:24512226

  19. Inhibitory Effects of Cytosolic Ca(2+) Concentration by Ginsenoside Ro Are Dependent on Phosphorylation of IP3RI and Dephosphorylation of ERK in Human Platelets.

    PubMed

    Kwon, Hyuk-Woo; Shin, Jung-Hae; Lee, Dong-Ha; Park, Hwa-Jin

    2015-01-01

    Intracellular Ca(2+) ([Ca(2+)] i ) is platelet aggregation-inducing molecule and is involved in activation of aggregation associated molecules. This study was carried out to understand the Ca(2+)-antagonistic effect of ginsenoside Ro (G-Ro), an oleanane-type saponin in Panax ginseng. G-Ro, without affecting leakage of lactate dehydrogenase, dose-dependently inhibited thrombin-induced platelet aggregation, and the half maximal inhibitory concentration was approximately 155 μM. G-Ro inhibited strongly thrombin-elevated [Ca(2+)] i , which was strongly increased by A-kinase inhibitor Rp-8-Br-cAMPS compared to G-kinase inhibitor Rp-8-Br-cGMPS. G-Ro increased the level of cAMP and subsequently elevated the phosphorylation of inositol 1, 4, 5-triphosphate receptor I (IP3RI) (Ser(1756)) to inhibit [Ca(2+)] i mobilization in thrombin-induced platelet aggregation. Phosphorylation of IP3RI (Ser(1756)) by G-Ro was decreased by PKA inhibitor Rp-8-Br-cAMPS. In addition, G-Ro inhibited thrombin-induced phosphorylation of ERK 2 (42 kDa), indicating inhibition of Ca(2+) influx across plasma membrane. We demonstrate that G-Ro upregulates cAMP-dependent IP3RI (Ser(1756)) phosphorylation and downregulates phosphorylation of ERK 2 (42 kDa) to decrease thrombin-elevated [Ca(2+)] i , which contributes to inhibition of ATP and serotonin release, and p-selectin expression. These results indicate that G-Ro in Panax ginseng is a beneficial novel Ca(2+)-antagonistic compound and may prevent platelet aggregation-mediated thrombotic disease. PMID:26355658

  20. Down-Regulation of FcεRI-Mediated CD63 Basophil Response during Short-Term VIT Determined Venom-Nonspecific Desensitization

    PubMed Central

    Čelesnik Smodiš, Nina; Šilar, Mira; Eržen, Renato; Rijavec, Matija; Košnik, Mitja; Korošec, Peter

    2014-01-01

    Background We recently showed a desensitization of FcεRI-mediated basophil response after short-term VIT. Our aim was to evaluate the allergen specificity of this desensitization. Methods In 11 Hymenoptera-venom double positive subjects, basophil threshold sensitivity (CD-sens) to anti-FcεRI, honeybee, and Vespula venom was assessed at the beginning and just before the first maintenance dose (MD) of single ultra-rush VIT. In some patients we also monitored CD-sens to rApi m 1 and/or rVes v 5 or other co-sensitizations (i.e., grass pollen). In additional 7 patients, basophils were stripped and sensitized with house dust mite (HDM) IgEs at the same time points. Results We demonstrated a marked reduction of CD-sens to anti-FcεRI and VIT-specific venom before the first MD in all 18 subjects included. Furthermore, in 10 out of 11 double positive subjects, a significant and comparable decrease before the first MD was also evident for non-VIT venom; this nonspecific decrease was further supported by the opposite recombinant species-specific major allergen. In one subject with additional grass pollen allergy, a decrease of CD-sens to grass allergen was also demonstrated. Similarly, in 7 cases of patients with passively HDM-sensitized basophils, a significant reduction of CD-sens was also evident to de novo sensitized HDM allergen. Conclusions Short-term VIT induced basophil desensitization to VIT-specific as well as to VIT-nonspecific venom. As opposed to long-term VIT, which induces venom-specific changes, the effect of short-term VIT seems to be venom-nonspecific. PMID:24733549

  1. SuMoToRI, an Ecophysiological Model to Predict Growth and Sulfur Allocation and Partitioning in Oilseed Rape (Brassica napus L.) Until the Onset of Pod Formation.

    PubMed

    Brunel-Muguet, Sophie; Mollier, Alain; Kauffmann, François; Avice, Jean-Christophe; Goudier, Damien; Sénécal, Emmanuelle; Etienne, Philippe

    2015-01-01

    Sulfur (S) nutrition in rapeseed (Brassica napus L.) is a major concern for this high S-demanding crop, especially in the context of soil S oligotrophy. Therefore, predicting plant growth, S plant allocation (between the plant's compartments) and S pool partitioning (repartition of the mobile-S vs. non-mobile-S fractions) until the onset of reproductive phase could help in the diagnosis of S deficiencies during the early stages. For this purpose, a process-based model, SuMoToRI (Sulfur Model Toward Rapeseed Improvement), was developed up to the onset of pod formation. The key features rely on (i) the determination of the S requirements used for growth (structural and metabolic functions) through critical S dilution curves and (ii) the estimation of a mobile pool of S that is regenerated by daily S uptake and remobilization from senescing leaves. This study describes the functioning of the model and presents the model's calibration and evaluation. SuMoToRI was calibrated and evaluated with independent datasets from greenhouse experiments under contrasting S supply conditions. It is run with a small number of parameters with generic values, except in the case of the radiation use efficiency, which was shown to be modulated by S supply. The model gave satisfying predictions of the dynamics of growth, S allocation between compartments and S partitioning, such as the mobile-S fraction in the leaves, which is an indicator of the remobilization potential toward growing sinks. The mechanistic features of SuMoToRI provide a process-based framework that has enabled the description of the S remobilizing process in a species characterized by senescence during the vegetative phase. We believe that this model structure could be useful for modeling S dynamics in other arable crops that have similar senescence-related characteristics. PMID:26635825

  2. SuMoToRI, an Ecophysiological Model to Predict Growth and Sulfur Allocation and Partitioning in Oilseed Rape (Brassica napus L.) Until the Onset of Pod Formation

    PubMed Central

    Brunel-Muguet, Sophie; Mollier, Alain; Kauffmann, François; Avice, Jean-Christophe; Goudier, Damien; Sénécal, Emmanuelle; Etienne, Philippe

    2015-01-01

    Sulfur (S) nutrition in rapeseed (Brassica napus L.) is a major concern for this high S-demanding crop, especially in the context of soil S oligotrophy. Therefore, predicting plant growth, S plant allocation (between the plant’s compartments) and S pool partitioning (repartition of the mobile-S vs. non-mobile-S fractions) until the onset of reproductive phase could help in the diagnosis of S deficiencies during the early stages. For this purpose, a process-based model, SuMoToRI (Sulfur Model Toward Rapeseed Improvement), was developed up to the onset of pod formation. The key features rely on (i) the determination of the S requirements used for growth (structural and metabolic functions) through critical S dilution curves and (ii) the estimation of a mobile pool of S that is regenerated by daily S uptake and remobilization from senescing leaves. This study describes the functioning of the model and presents the model’s calibration and evaluation. SuMoToRI was calibrated and evaluated with independent datasets from greenhouse experiments under contrasting S supply conditions. It is run with a small number of parameters with generic values, except in the case of the radiation use efficiency, which was shown to be modulated by S supply. The model gave satisfying predictions of the dynamics of growth, S allocation between compartments and S partitioning, such as the mobile-S fraction in the leaves, which is an indicator of the remobilization potential toward growing sinks. The mechanistic features of SuMoToRI provide a process-based framework that has enabled the description of the S remobilizing process in a species characterized by senescence during the vegetative phase. We believe that this model structure could be useful for modeling S dynamics in other arable crops that have similar senescence-related characteristics. PMID:26635825

  3. Influence factors and gene expression patterns during MeJa-induced gummosis in peach.

    PubMed

    Li, Minji; Liu, Meiyan; Peng, Futian; Fang, Long

    2015-06-15

    Jasmonates (JAs) play important roles in gummosis in peach. Mechanical damage, methyl jasmonate (MeJa), and ethylene can induce gummosis on peach shoots in the field. In this study, we used MeJa (2%, w/w) to induce gummosis on current-year shoots in peach on high temperature (35°C). Based on the experimental model, we studied the influence of factors on the development of peach gummosis. Our experimental results showed that high temperature could promote gummosis development induced by MeJa. Exogenous CaCl2 treatment reduced the degree of gummosis by increasing the calcium content in shoots, which is conducive to the synthesis and maintenance of the cell wall. Using digital gene expression (DGE), 3831 differentially expressed genes were identified in the MeJa treatment versus the control. By analyzing changes in gene expression associated with cell wall degradation, genes encoding pectin methylesterase (PME) and endo-polygalacturonase (PG) were found to be significantly induced, suggesting that they are key enzymes in cell wall degradation that occurs during MeJa-induced gummosis. Genes for glycosyltransferase (GT) and cellulose synthase (CS) were also significantly upregulated by MeJa. This result suggests that MeJa treatment not only promotes the degradation of polysaccharides to destroy the cell wall, but also promotes the synthesis of new polysaccharides. We also analyzed changes in gene expression associated with sugar metabolism, senescence, and defense. MeJa treatment affected the expression of genes related to sugar metabolism and promoted plant senescence. Among the defense genes, the expression pattern of phenylalanine ammonium lyase (PAL) suggested that PAL may play an important role in protecting against the effects of MeJa treatment. Our experimental results showed that MeJa treatment can promote the biosynthesis and signal transduction of ethylene in peach shoots; they can induce gummosis on peach shoots respectively, and there are overlaps between

  4. Efficient parallel algorithm of second-order Møller-Plesset perturbation theory with resolution-of-identity approximation (RI-MP2)

    NASA Astrophysics Data System (ADS)

    Katouda, Michio; Nagase, Shigeru

    An efficient parallel algorithm is developed for second-order Møller-Plesset perturbation theory with the resolution-of-identity approximation of two-electron repulsion integrals (RI-MP2) to perform MP2 energy calculations of large molecules on distributed memory processors. Benchmark calculations are carried out for taxol (C47H51NO14), valinomycin (C54H90N6O18), and two-layer nanographene sheets (C96H24)2, which show the high parallel efficiency of the developed algorithm.

  5. Insights into cell membrane microdomain organization from live cell single particle tracking of the IgE high affinity receptor FcϵRI of mast cells.

    PubMed

    Espinoza, Flor A; Wester, Michael J; Oliver, Janet M; Wilson, Bridget S; Andrews, Nicholas L; Lidke, Diane S; Steinberg, Stanly L

    2012-08-01

    Current models propose that the plasma membrane of animal cells is composed of heterogeneous and dynamic microdomains known variously as cytoskeletal corrals, lipid rafts and protein islands. Much of the experimental evidence for these membrane compartments is indirect. Recently, live cell single particle tracking studies using quantum dot-labeled IgE bound to its high affinity receptor FcϵRI, provided direct evidence for the confinement of receptors within micrometer-scale cytoskeletal corrals. In this study, we show that an innovative time-series analysis of single particle tracking data for the high affinity IgE receptor, FcϵRI, on mast cells provides substantial quantitative information about the submicrometer organization of the membrane. The analysis focuses on the probability distribution function of the lengths of the jumps in the positions of the quantum dots labeling individual IgE FcϵRI complexes between frames in movies of their motion. Our results demonstrate the presence, within the micrometer-scale cytoskeletal corrals, of smaller subdomains that provide an additional level of receptor confinement. There is no characteristic size for these subdomains; their size varies smoothly from a few tens of nanometers to a over a hundred nanometers. In QD-IGE labeled unstimulated cells, jumps of less than 70 nm predominate over longer jumps. Addition of multivalent antigen to crosslink the QD-IgE-FcϵRI complexes causes a rapid slowing of receptor motion followed by a long tail of mostly jumps less than 70 nm. The reduced receptor mobility likely reflects both the membrane heterogeneity revealed by the confined motion of the monomeric receptor complexes and the antigen-induced cross linking of these complexes into dimers and higher oligomers. In both cases, the probability distribution of the jump lengths is well fit, from 10 nm to over 100 nm, by a novel power law. The fit for short jumps suggests that the motion of the quantum dots can be modeled as

  6. The Immunotherapeutics & Vaccine Summit--CHI's fourth annual meeting. Preclinical/clinical development of immunotherapies and vaccines. 17-19 August 2009, Providence, RI, USA.

    PubMed

    Butterfield, Lisa H

    2009-10-01

    The Immunotherapeutics & Vaccine Summit held in Providence, RI, USA included topics covering new preclinical and clinical developments in the field of immunotherapies and vaccines. This conference report highlights selected presentations on the iSBTc-FDA-NCI taskforce findings on immunotherapy biomarkers, clinical assay development and optimization, and bioassays to measure immune responses. Investigational vaccines discussed include a fusion protein adjuvant vaccine (Research by Discovery), a novel intradermal particle delivery device (Université de Sherbrooke) and a Hsp-based vaccine for meningitis (ImmunoBiology Ltd).

  7. A Pseudo-Full Mutation Identified in Fragile X Assay Reveals a Novel Base Change Abolishing an EcoRI Restriction Site

    PubMed Central

    Liang, Shujian; Bass, Harold N.; Gao, Hanlin; Astbury, Caroline; Jamehdor, Mehdi R.; Qu, Yong

    2008-01-01

    Diagnostic testing for the fragile X syndrome is designed to detect the most common mutation, a CGG expansion in the 5′-untranslated region of the fragile X mental retardation (FMRI) gene. PCR can determine the number of CGG repeats less than 100, whereas Southern analysis can detect large premutations, full mutations, and their methylation status. Bands larger than 5.8 kb observed via Southern analysis are usually considered a methylated full mutation, causing fragile X syndrome in males and varied clinical presentations in females. We observed a 10.9-kb band on a Southern blot assay from an autistic girl with language delay. Further investigation identified a novel G-to-A transition at an EcoRI cleavage site, upstream of the CGG repeat region of the FMRI gene. This base change abolished the EcoRI restriction site, resulting in a 10.9-kb pseudo-full mutation. This G-to-A base change has not been previously reported and was not identified in a subsequent analysis of 105 male and 30 female patient samples. The clear 10.9-kb band detected on a Southern blot assay for fragile X syndrome mimics a large, methylated full mutation, which could result in a misdiagnosis without the benefit of family studies and further testing. PMID:18687789

  8. TRPM4-mediated control of FcεRI-evoked Ca(2+) elevation comprises enhanced plasmalemmal trafficking of TRPM4 channels in connective tissue type mast cells.

    PubMed

    Rixecker, Torben; Mathar, Ilka; Medert, Rebekka; Mannebach, Stefanie; Pfeifer, Alexander; Lipp, Peter; Tsvilovskyy, Volodymyr; Freichel, Marc

    2016-01-01

    TRPM4 proteins form Ca(2+)-activated non selective cation (CAN) channels that affect transmembrane Ca(2+)-influx by determining the membrane potential. Tight control of the intracellular Ca(2+) concentration is essential for mast cell responses. In this study, we analyzed the expression of TRPM4 in peritoneal mast cells (PCMC) as a model for connective tissue type mast cells with respect to FcεRI-evoked calcium changes and the subcellular localization of fluorescently labeled TRPM4 using two viral transduction systems before and following antigen stimulation. Our results show that TRPM4 is expressed in PCMCs, is an essential constituent of the endogenous CAN channels in PCMCs and regulates antigen-evoked increases in intracellular calcium that are significantly enhanced in TRPM4-deficient PCMCs. Compared to PCMCs analyzed before antigen stimulation, the cells depict a substantially increased localization of TRPM4 proteins towards the plasma membrane after FcεRI stimulation. Thus, TRPM4 functions as a limiting factor for antigen evoked calcium rise in connective tissue type mast cells and concurrent translocation of TRPM4 into the plasma membrane is part of this mechanism. PMID:27624684

  9. Identification of Major Risk Sources for Surface Water Pollution by Risk Indexes (RI) in the Multi-Provincial Boundary Region of the Taihu Basin, China.

    PubMed

    Yao, Hong; Li, Weixin; Qian, Xin

    2015-08-21

    Environmental safety in multi-district boundary regions has been one of the focuses in China and is mentioned many times in the Environmental Protection Act of 2014. Five types were categorized concerning the risk sources for surface water pollution in the multi-provincial boundary region of the Taihu basin: production enterprises, waste disposal sites, chemical storage sites, agricultural non-point sources and waterway transportations. Considering the hazard of risk sources, the purification property of environmental medium and the vulnerability of risk receptors, 52 specific attributes on the risk levels of each type of risk source were screened out. Continuous piecewise linear function model, expert consultation method and fuzzy integral model were used to calculate the integrated risk indexes (RI) to characterize the risk levels of pollution sources. In the studied area, 2716 pollution sources were characterized by RI values. There were 56 high-risk sources screened out as major risk sources, accounting for about 2% of the total. The numbers of sources with high-moderate, moderate, moderate-low and low pollution risk were 376, 1059, 101 and 1124, respectively, accounting for 14%, 38%, 5% and 41% of the total. The procedure proposed could be included in the integrated risk management systems of the multi-district boundary region of the Taihu basin. It could help decision makers to identify major risk sources in the risk prevention and reduction of surface water pollution.

  10. TRPM4-mediated control of FcεRI-evoked Ca2+ elevation comprises enhanced plasmalemmal trafficking of TRPM4 channels in connective tissue type mast cells

    PubMed Central

    Rixecker, Torben; Mathar, Ilka; Medert, Rebekka; Mannebach, Stefanie; Pfeifer, Alexander; Lipp, Peter; Tsvilovskyy, Volodymyr; Freichel, Marc

    2016-01-01

    TRPM4 proteins form Ca2+-activated non selective cation (CAN) channels that affect transmembrane Ca2+-influx by determining the membrane potential. Tight control of the intracellular Ca2+ concentration is essential for mast cell responses. In this study, we analyzed the expression of TRPM4 in peritoneal mast cells (PCMC) as a model for connective tissue type mast cells with respect to FcεRI-evoked calcium changes and the subcellular localization of fluorescently labeled TRPM4 using two viral transduction systems before and following antigen stimulation. Our results show that TRPM4 is expressed in PCMCs, is an essential constituent of the endogenous CAN channels in PCMCs and regulates antigen-evoked increases in intracellular calcium that are significantly enhanced in TRPM4-deficient PCMCs. Compared to PCMCs analyzed before antigen stimulation, the cells depict a substantially increased localization of TRPM4 proteins towards the plasma membrane after FcεRI stimulation. Thus, TRPM4 functions as a limiting factor for antigen evoked calcium rise in connective tissue type mast cells and concurrent translocation of TRPM4 into the plasma membrane is part of this mechanism. PMID:27624684

  11. Identification of Major Risk Sources for Surface Water Pollution by Risk Indexes (RI) in the Multi-Provincial Boundary Region of the Taihu Basin, China.

    PubMed

    Yao, Hong; Li, Weixin; Qian, Xin

    2015-08-01

    Environmental safety in multi-district boundary regions has been one of the focuses in China and is mentioned many times in the Environmental Protection Act of 2014. Five types were categorized concerning the risk sources for surface water pollution in the multi-provincial boundary region of the Taihu basin: production enterprises, waste disposal sites, chemical storage sites, agricultural non-point sources and waterway transportations. Considering the hazard of risk sources, the purification property of environmental medium and the vulnerability of risk receptors, 52 specific attributes on the risk levels of each type of risk source were screened out. Continuous piecewise linear function model, expert consultation method and fuzzy integral model were used to calculate the integrated risk indexes (RI) to characterize the risk levels of pollution sources. In the studied area, 2716 pollution sources were characterized by RI values. There were 56 high-risk sources screened out as major risk sources, accounting for about 2% of the total. The numbers of sources with high-moderate, moderate, moderate-low and low pollution risk were 376, 1059, 101 and 1124, respectively, accounting for 14%, 38%, 5% and 41% of the total. The procedure proposed could be included in the integrated risk management systems of the multi-district boundary region of the Taihu basin. It could help decision makers to identify major risk sources in the risk prevention and reduction of surface water pollution. PMID:26308032

  12. Identification of Major Risk Sources for Surface Water Pollution by Risk Indexes (RI) in the Multi-Provincial Boundary Region of the Taihu Basin, China

    PubMed Central

    Yao, Hong; Li, Weixin; Qian, Xin

    2015-01-01

    Environmental safety in multi-district boundary regions has been one of the focuses in China and is mentioned many times in the Environmental Protection Act of 2014. Five types were categorized concerning the risk sources for surface water pollution in the multi-provincial boundary region of the Taihu basin: production enterprises, waste disposal sites, chemical storage sites, agricultural non-point sources and waterway transportations. Considering the hazard of risk sources, the purification property of environmental medium and the vulnerability of risk receptors, 52 specific attributes on the risk levels of each type of risk source were screened out. Continuous piecewise linear function model, expert consultation method and fuzzy integral model were used to calculate the integrated risk indexes (RI) to characterize the risk levels of pollution sources. In the studied area, 2716 pollution sources were characterized by RI values. There were 56 high-risk sources screened out as major risk sources, accounting for about 2% of the total. The numbers of sources with high-moderate, moderate, moderate-low and low pollution risk were 376, 1059, 101 and 1124, respectively, accounting for 14%, 38%, 5% and 41% of the total. The procedure proposed could be included in the integrated risk management systems of the multi-district boundary region of the Taihu basin. It could help decision makers to identify major risk sources in the risk prevention and reduction of surface water pollution. PMID:26308032

  13. Gender-Related Effects of Sex Steroids on Histamine Release and FcεRI Expression in Rat Peritoneal Mast Cells

    PubMed Central

    Muñoz-Cruz, Samira; Mendoza-Rodríguez, Yolanda; Nava-Castro, Karen E.; Yepez-Mulia, Lilián; Morales-Montor, Jorge

    2015-01-01

    Mast cells (MCs) are versatile effector and regulatory cells in various physiologic, immunologic, and pathologic processes. In addition to the well-characterized IgE/FcεRI-mediated degranulation, a variety of biological substances can induce MCs activation and release of their granule content. Sex steroids, mainly estradiol and progesterone, have been demonstrated to elicit MCs activation. Most published studies have been conducted on MCs lines or freshly isolated peritoneal and bone marrow-derived MC without addressing gender impact on MC response. Our goal was to investigate if the effect of estradiol, progesterone, testosterone, and dihydrotestosterone (DHT) on MCs may differ depending on whether female or male rats are used as MCs donors. Our results demonstrated that effect of sex steroids on MCs histamine release is dose- and gender-dependent and can be direct, synergistic, or inhibitory depending on whether hormones are used alone or to pretreat MCs followed by substance P-stimulation or upon IgE-mediated stimulation. In contrast, sex steroids did not have effect on the MC expression of the IgE high affinity receptor, FcεRI, no matter female or male rats were used. In conclusion, MCs degranulation is modulated by sex hormones in a gender-selective fashion, with MC from females being more susceptible than MC from males to the effects of sex steroids. PMID:25973435

  14. A balanced JA/ABA status may correlate with adaptation to osmotic stress in Vitis cells.

    PubMed

    Ismail, Ahmed; Seo, Mitsunori; Takebayashi, Yumiko; Kamiya, Yuji; Nick, Peter

    2015-08-01

    Water-related stress is considered a major type of plant stress. Osmotic stress, in particular, represents the common part of all water-related stresses. Therefore, plants have evolved different adaptive mechanisms to cope with osmotic-related disturbances. In the current work, two grapevine cell lines that differ in their osmotic adaptability, Vitis rupestris and Vitis riparia, were investigated under mannitol-induced osmotic stress. To dissect signals that lead to adaptability from those related to sensitivity, osmotic-triggered responses with respect to jasmonic acid (JA) and its active form JA-Ile, abscisic acid (ABA), and stilbene compounds, as well as the expression of their related genes were observed. In addition, the transcript levels of the cellular homeostasis gene NHX1 were examined. The data are discussed with a hypothesis suggesting that a balance of JA and ABA status might correlate with cellular responses, either guiding cells to sensitivity or to progress toward adaptation. PMID:26277753

  15. High-affinity immunoglobulin E receptor (Fc epsilon RI)-bearing eosinophils, mast cells, macrophages and Langerhans' cells in allergen-induced late-phase cutaneous reactions in atopic subjects.

    PubMed Central

    Ying, S; Barata, L T; Meng, Q; Grant, J A; Barkans, J; Durham, S R; Kay, A B

    1998-01-01

    We have used in situ hybridization (ISH) and immunohistochemistry (IHC) to investigate the kinetics of the expression for Fc epsilon RI mRNA (alpha-, beta- and gamma-chains), the alpha-chain protein product, as well as the phenotype of the mRNA- or protein-positive cells in allergen-induced late-phase skin reactions in atopic subjects. Compared with diluent controls, there were significant increases in the total number of mRNA+ cells for the alpha-, beta- and gamma-chains for Fc epsilon RI at all time-points (6, 24 and 48 hr) after allergen challenge (P < 0.01). By double IHC/ISH significant increases in alpha-, beta- and gamma-chain mRNA+ macrophages, eosinophils, mast cells and CD1a+ cells were also observed after allergen challenge (P < 0.05). The distribution of Fc epsilon RI subunit (alpha-, beta-, or gamma-chain) mRNA+ co-localization was CD68+ macrophages (42-47%), EG2+ eosinophils (33-39%), tryptase+ mast cells (5-11%) and CD1a+ Langerhans' cells (2-4%). Using single IHC, significant increases in the total number of Fc epsilon RI protein+ cells (P < 0.01) were observed 24 and 48 hr after allergen challenge. Double IHC showed that the distribution of Fc epsilon RI+ cells was tryptase+ mast cells (33%), CD68+ macrophages (36%), EG2+ eosinophils (20%), CD1a+ Langerhans' cells (4%) and unidentified cells (7%), at the 24-hr allergen-challenged sites. These observations suggest that the cutaneous late-phase reaction in man is associated with up-regulation of Fc epsilon RI on eosinophils, macrophages, mast cells and Langerhans' cells. Images Figure 6 PMID:9616380

  16. The complete nucleotide sequence of a plant root-inducing (Ri) plasmid indicates its chimeric structure and evolutionary relationship between tumor-inducing (Ti) and symbiotic (Sym) plasmids in Rhizobiaceae.

    PubMed

    Moriguchi, K; Maeda, Y; Satou, M; Hardayani, N S; Kataoka, M; Tanaka, N; Yoshida, K

    2001-03-30

    The Ri (root-inducing) plasmid in Agrobacterium rhizogenes and Ti (tumor-inducing) plasmid in Agrobacterium tumefaciens have provided the fundamental basis for the construction of plant vectors and transgenic plants. Recently, the determination of the first complete nucleotide sequence of the Ti plasmid (pTi-SAKURA) has been successful. To understand the general structure of these oncogenic T-DNA transfer plasmids, the whole nucleotide sequence of a mikimopine-type Ri plasmid, pRi1724, was analyzed. The plasmid is 217,594 bp in size, and has 173 open reading frames (ORFs) in total, which are asymmetrically distributed. Except for 27 ORFs, which are unknown, 173 ORFs were classified into 12 groups as follows: three for DNA replication, nine for plasmid modification, 22 for conjugation, 26 for virulence, 11 for T-DNA gene, 19 for mikimopine/mikimopine-lactam transport, ten for an unknown opine metabolism, seven for transcriptional regulator, five for sugar transport, five for glycerol metabolism, four for chemoreceptor and 32 for others. The elucidated chimeric structure of pRi1724 interestingly indicates that the evolution of Rhizobiaceae plasmids seems to have kept interactions among the plasmids; especially, the genes and elements for a conjugal transfer of pRi1724 had clearly closer kinship to those of a Sym (symbiotic) plasmid, pNGR234a in Rhizobium sp. than those of Ti plasmids. By using sequencing and Northern analysis, we examined the metabolic pathway and gene expression of mikimopine, which is probably an Ri-specific opine. PMID:11273700

  17. Risk-Informed Monitoring, Verification and Accounting (RI-MVA). An NRAP White Paper Documenting Methods and a Demonstration Model for Risk-Informed MVA System Design and Operations in Geologic Carbon Sequestration

    SciTech Connect

    Unwin, Stephen D.; Sadovsky, Artyom; Sullivan, E. C.; Anderson, Richard M.

    2011-09-30

    This white paper accompanies a demonstration model that implements methods for the risk-informed design of monitoring, verification and accounting (RI-MVA) systems in geologic carbon sequestration projects. The intent is that this model will ultimately be integrated with, or interfaced with, the National Risk Assessment Partnership (NRAP) integrated assessment model (IAM). The RI-MVA methods described here apply optimization techniques in the analytical environment of NRAP risk profiles to allow systematic identification and comparison of the risk and cost attributes of MVA design options.

  18. Effects of Human Alterations on Global River Basins and their Associated Coastal Zones: focus on River-dominated Ocean Margins (RiOMars)

    NASA Astrophysics Data System (ADS)

    Dürr, H. H.; Van Cappellen, P.; Meybeck, M.; Laruelle, G. G.; Mayorga, E.; Hartmann, J.; Maavara, T.; Bouwman, L.; Seitzinger, S.

    2013-12-01

    Coastal systems connected to large rivers, mostly major delta systems or river-dominated ocean margins (RiOMars), make up <1% of the worldwide shoreline. Yet, they comprise 28% of the exorheic terrestrial river basins area, and host 26.4% of the population connected via rivers to coastal systems (Dürr et al. 2011). These systems receive 41.6% of the discharge delivered to oceans. 25.7% of the suspended sediment load is processed, with comparable amounts for the total nitrogen (N) and phosphorus (P) loads. The filter function for incoming riverine nutrients (N, P, C, Si) in these coastal environments is very different from other near-shore environments such as macro-tidal estuaries, lagoons or fjords. In this type, the major biogeochemical transformation of incoming river fluxes takes place in a plume on the continental margins (RiOMars). This effect is even more pronounced at high flow stages when the highest volumes of water and material are delivered. The filtering efficiency of delta systems is highest during low flows, and some of the systems may be influenced by tides when ebb and flood might flow through different channels, creating a braided network of streams and many islands (Dürr et al. 2011). Here, we discuss controls on the different nutrient forms delivered to different coastal environments, and how they are assessed (Global-NEWS and other approaches), with a special focus on large deltas and RiOMars. Drivers and impacts of global change will be explored through the Millenium Assessment Scenarios and how the fluxes to these different coastal systems might change. An increasing role is also played by aquaculture in different coastal types as a non-insignificant source of nutrients. World-wide distribution of coastal types and their related river basins (Dürr et al. 2011). Characteristics of types of near-shore coastal areas and their associated river basins Greenland and Antarctica excepted. Data from Dürr et al. (2011) and the Global-NEWS program

  19. Dermal sensitization potential of ja-2 solid propellant in guinea pigs. Report for 4 April-9 May 1986

    SciTech Connect

    Lewis, C.M.; Brown, L.D.; Korte, D.W.

    1989-11-01

    JA-2 Solid Propellant was evaluated for its potential to produce dermal sensitization in male guinea pigs. The Buehler test, which utilizes repeated closed patch inductions with the test compound, was used for this evaluation. No evidence that JA-2 Solid Propellant induced sensitization was obtained in the study.

  20. Combined analysis by GC (RI), GC-MS and 13C NMR of the supercritical fluid extract of Abies alba twigs.

    PubMed

    Duquesnoy, Emilie; Marongiu, Bruno; Castola, Vincent; Piras, Alessandra; Porcedda, Silvia; Casanova, Joseph

    2010-12-01

    Two samples (leaves and twigs) of Abies alba Miller from Corsica were extracted using supercritical CO2 and their chemical compositions were compared with those of the essential oils obtained from the same batch of plant material. In total 45 components were identified using combined analysis by GC (RI), GC-MS and 13C NMR. It was observed that the contents of monoterpenes (mainly represented by limonene, alpha-pinene and camphene) were significantly lower in the supercritical fluid extract (SFE) than in the essential oil (EO). Conversely, the proportions of sesquiterpenes were much higher in CO2 extracts than in essential oils (around 30% vs 4%). Cis-abienol, a diterpene alcohol, was identified only in SFE, and the proportions of this constituent (7.5% and 17.3%) were determined using quantitative 13C NMR since it was under estimated using the standard conditions of GC. PMID:21299139

  1. Status of Beam Line Detectors for the BigRIPS Fragment Separator at RIKEN RI Beam Factory: Issues on High Rates and Resolution

    NASA Astrophysics Data System (ADS)

    Sato, Yuki; Fukuda, Naoki; Takeda, Hiroyuki; Kameda, Daisuke; Suzuki, Hiroshi; Shimizu, Yohei; Ahn, DeukSoon; Murai, Daichi; Inabe, Naohito; Shimaoka, Takehiro; Tsubota, Masakatsu; Kaneko, Junichi H.; Chayahara, Akiyoshi; Umezawa, Hitoshi; Shikata, Shinichi; Kumagai, Hidekazu; Murakami, Hiroyuki; Sato, Hiromi; Yoshida, Koichi; Kubo, Toshiyuki

    A multiple sampling ionization chamber (MUSIC) and parallel-plate avalanche counters (PPACs) were installed within the superconducting in-flight separator, named BigRIPS, at the RIKEN Nishina Center for particle identification of RI beams. The MUSIC detector showed negligible charge collection inefficiency from recombination of electrons and ions, up to a 99-kcps incidence rate for high-energy heavy ions. For the PPAC detectors, the electrical discharge durability for incident heavy ions was improved by changing the electrode material. Finally, we designed a single crystal diamond detector, which is under development for TOF measurements of high-energy heavy ions, that has a very fast response time (pulse width <1 ns).

  2. KEY COMPARISON: BIPM comparison BIPM.RI(II)-K1.Cu-64 of the activity measurements of the radionuclide 64Cu

    NASA Astrophysics Data System (ADS)

    Michotte, C.; Courte, S.; Ratel, G.; Kossert, K.; Nähle, O. J.

    2009-01-01

    In 2009, the Physikalisch-Technische Bundesanstalt (PTB), Germany, submitted a sample of known activity of 64Cu to the International Reference System (SIR) for activity comparison at the Bureau International des Poids et Mesures (BIPM). The value of the activity submitted was about 9.3 MBq. The result of this new comparison has been approved for publication by Section II of the Consultative Committee for Ionizing Radiation (CCRI(II)), comparison identifier BIPM.RI(II)-K1.Cu-64. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI Section II, according to the provisions of the CIPM Mutual Recognition Arrangement (MRA).

  3. Genetic diversity of Trichomonas vaginalis clinical isolates determined by EcoRI restriction fragment length polymorphism of heat-shock protein 70 genes.

    PubMed

    Meade, John C; de Mestral, Jacqueline; Stiles, Jonathan K; Secor, W Evan; Finley, Richard W; Cleary, John D; Lushbaugh, William B

    2009-02-01

    Restriction fragment length polymorphism (RFLP) analysis using a multilocus heat-inducible cytoplasmic heat-shock protein 70 (Hsp70) hybridization probe with EcoRI-digested genomic DNA was used in molecular typing of 129 Trichomonas vaginalis isolates. Results indicate that Trichomonas organisms exhibit considerable polymorphism in their Hsp70 RFLP patterns. Analysis of seven American Type Culture Collection reference strains and 122 clinical isolates, including 84 isolates from Jackson, Mississippi, 18 isolates from Atlanta, Georgia, and 20 isolates from throughout the United States, showed 105 distinct Hsp70 RFLP pattern subtypes for Trichomonas. Phylogenetic analysis of the Hsp70 RFLP data showed that the T. vaginalis isolates were organized into two clonal lineages. These results illustrate the substantial genomic diversity present in T. vaginalis and indicate that a large number of genetically distinct Trichomonas isolates may be responsible for human trichomoniasis in the United States. PMID:19190222

  4. Combined analysis by GC (RI), GC-MS and 13C NMR of the supercritical fluid extract of Abies alba twigs.

    PubMed

    Duquesnoy, Emilie; Marongiu, Bruno; Castola, Vincent; Piras, Alessandra; Porcedda, Silvia; Casanova, Joseph

    2010-12-01

    Two samples (leaves and twigs) of Abies alba Miller from Corsica were extracted using supercritical CO2 and their chemical compositions were compared with those of the essential oils obtained from the same batch of plant material. In total 45 components were identified using combined analysis by GC (RI), GC-MS and 13C NMR. It was observed that the contents of monoterpenes (mainly represented by limonene, alpha-pinene and camphene) were significantly lower in the supercritical fluid extract (SFE) than in the essential oil (EO). Conversely, the proportions of sesquiterpenes were much higher in CO2 extracts than in essential oils (around 30% vs 4%). Cis-abienol, a diterpene alcohol, was identified only in SFE, and the proportions of this constituent (7.5% and 17.3%) were determined using quantitative 13C NMR since it was under estimated using the standard conditions of GC.

  5. Outgrowth of drug-resistant carcinomas expressing markers of tumor aggression after long term TβRI/II kinase inhibition with LY2109761

    PubMed Central

    Connolly, Erin C.; Saunier, Elise F.; Quigley, David; Luu, Minh Thu; Sapio, Angela De; Hann, Byron; Yingling, Jonathan M.; Akhurst, Rosemary J.

    2011-01-01

    Transforming Growth Factor β (TGF-β) is produced excessively by many solid tumors and can drive malignant progression through multiple effects on the tumor cell and microenvironment. TGF-β signaling pathway inhibitors have shown efficacy in pre-clinical models of metastatic cancer. Here we investigated the effect of systemic LY2109761, a type I /II receptor (TβRI/TβRII) kinase inhibitor, in both a tumor allograft model and in the mouse skin model of de novo chemically-induced carcinogenesis in vivo. Systemic LY2109761 administration disrupted tumor vascular architecture and reduced myofibroblast differentiation of E4 skin carcinoma cells in a tumor allograft. In the 7,12 dimethyl-benzanthracene plus phorbol-myristate-acetate -induced skin chemical carcinogenesis model, acute dosing of established naïve primary carcinomas with LY2109761 (100mg/Kg) every eight hours for ten days (100mg/kg) diminished P-Smad2 levels and marginally decreased the expression of inflammatory and invasive markers. Sustained exposure to LY2109761 (100mg/kg/day) throughout the tumor outgrowth phase had no effect on carcinoma latency or incidence. However, molecular analysis of resultant carcinomas by microarray gene expression, Western blot and immunohistochemistry suggests that long term LY2109761 exposure leads to the outgrowth of carcinomas with elevated P-Smad2 levels that do not respond to drug. This is the first description of acquired resistance to a small molecule inhibitor of the TGF-βRI/II kinase. Resultant carcinomas were more aggressive and inflammatory in nature, with delocalized E-Cadherin and elevated expression of Il23a, laminin V and MMPs. Therefore, TGF-β inhibitors might be clinically useful for applications requiring acute administration, but chronic patient exposure to such drugs should be undertaken with caution. PMID:21282335

  6. Development of an in vitro model system for studying the interaction of Equus caballus IgE with its high-affinity receptor FcεRI

    PubMed Central

    Sabban, Sari; Ye, Hongtu; Helm, Birgit

    2014-01-01

    The interaction of IgE with its high-affinity Fc receptor (FcεRI) followed by an antigenic challenge is the principal pathway in IgE mediated allergic reactions. As a consequence of the high affinity binding between IgE and FcεRI, along with the continuous production of IgE by B cells, allergies usually persist throughout life, with currently no permanent cure available. Horses, especially race horses, which are commonly inbred, are a species of mammals that are very prone to the development of hypersensitivity responses, which can seriously affect their performance. Physiological responses to allergic sensitization in horses mirror that observed in humans and dogs. In this paper we describe the development of an in situ assay system for the quantitative assessment of the release of mediators of the allergic response pertaining to the equine system. To this end, the gene encoding equine FcεRIα was transfected into and expressed onto the surface of parental Rat Basophil Leukemia (RBL-2H3.1) cells. The gene product of the transfected equine α-chain formed a functional receptor complex with the endogenous rat β- and γ-chains 1. The resultant assay system facilitated an assessment of the quantity of mediator secreted from equine FcεRIα transfected RBL-2H3.1 cells following sensitization with equine IgE and antigenic challenge using β-hexosaminidase release as a readout 2, 3. Mediator release peaked at 36.68% ± 4.88% at 100 ng ml-1 of antigen. This assay was modified from previous assays used to study human and canine allergic responses 4, 5. We have also shown that this type of assay system has multiple applications for the development of diagnostic tools and the safety assessment of potential therapeutic intervention strategies in allergic disease 6, 2, 3. PMID:25406512

  7. Enhancement of antibody-dependent cell-mediated cytotoxicity by endowing IgG with FcαRI (CD89) binding

    PubMed Central

    Borrok, M Jack; Luheshi, Nadia M; Beyaz, Nurten; Davies, Gareth C; Legg, James W; Wu, Herren; Dall'Acqua, William F; Tsui, Ping

    2015-01-01

    Fc effector functions such as antibody-dependent cell-mediated cytotoxicity (ADCC) and antibody-dependent cell-mediated phagocytosis (ADCP) are crucial to the efficacy of many antibody therapeutics. In addition to IgG, antibodies of the IgA isotype can also promote cell killing through engagement of myeloid lineage cells via interactions between the IgA-Fc and FcαRI (CD89). Herein, we describe a unique, tandem IgG1/IgA2 antibody format in the context of a trastuzumab variable domain that exhibits enhanced ADCC and ADCP capabilities. The IgG1/IgA2 tandem Fc format retains IgG1 FcγR binding as well as FcRn-mediated serum persistence, yet is augmented with myeloid cell-mediated effector functions via FcαRI/IgA Fc interactions. In this work, we demonstrate anti-human epidermal growth factor receptor-2 antibodies with the unique tandem IgG1/IgA2 Fc can better recruit and engage cytotoxic polymorphonuclear (PMN) cells than either the parental IgG1 or IgA2. Pharmacokinetics of IgG1/IgA2 in BALB/c mice are similar to the parental IgG, and far surpass the poor serum persistence of IgA2. The IgG1/IgA2 format is expressed at similar levels and with similar thermal stability to IgG1, and can be purified via standard protein A chromatography. The tandem IgG1/IgA2 format could potentially augment IgG-based immunotherapeutics with enhanced PMN-mediated cytotoxicity while avoiding many of the problems associated with developing IgAs. PMID:25970007

  8. Integrated metabolomic and proteomic analysis reveals systemic responses of Rubrivivax benzoatilyticus JA2 to aniline stress.

    PubMed

    Mujahid, Md; Prasuna, M Lakshmi; Sasikala, Ch; Ramana, Ch Venkata

    2015-02-01

    Aromatic amines are widely distributed in the environment and are major environmental pollutants. Although degradation of aromatic amines is well studied in bacteria, physiological adaptations and stress response to these toxic compounds is not yet fully understood. In the present study, systemic responses of Rubrivivax benzoatilyticus JA2 to aniline stress were deciphered using metabolite and iTRAQ-labeled protein profiling. Strain JA2 tolerated high concentrations of aniline (30 mM) with trace amounts of aniline being transformed to acetanilide. GC-MS metabolite profiling revealed aniline stress phenotype wherein amino acid, carbohydrate, fatty acid, nitrogen metabolisms, and TCA (tricarboxylic acid cycle) were modulated. Strain JA2 responded to aniline by remodeling the proteome, and cellular functions, such as signaling, transcription, translation, stress tolerance, transport and carbohydrate metabolism, were highly modulated. Key adaptive responses, such as transcription/translational changes, molecular chaperones to control protein folding, and efflux pumps implicated in solvent extrusion, were induced in response to aniline stress. Proteo-metabolomics indicated extensive rewiring of metabolism to aniline. TCA cycle and amino acid catabolism were down-regulated while gluconeogenesis and pentose phosphate pathways were up-regulated, leading to the synthesis of extracellular polymeric substances. Furthermore, increased saturated fatty acid ratios in membranes due to aniline stress suggest membrane adaptation. The present study thus indicates that strain JA2 employs multilayered responses: stress response, toxic compound tolerance, energy conservation, and metabolic rearrangements to aniline.

  9. Transcriptome Analysis in Haematococcus pluvialis: Astaxanthin Induction by Salicylic Acid (SA) and Jasmonic Acid (JA)

    PubMed Central

    Wu, Guanxun; Li, Guoqiang; Sun, Haifeng; Deng, Suzhen; Shen, Yicheng; Chen, Guoqiang; Zhang, Ruihao; Meng, Chunxiao; Zhang, Xiaowen

    2015-01-01

    Haematococcus pluvialis is an astaxanthin-rich microalga that can increase its astaxanthin production by salicylic acid (SA) or jasmonic acid (JA) induction. The genetic transcriptome details of astaxanthin biosynthesis were analyzed by exposing the algal cells to 25 mg/L of SA and JA for 1, 6 and 24 hours, plus to the control (no stress). Based on the RNA-seq analysis, 56,077 unigenes (51.7%) were identified with functions in response to the hormone stress. The top five identified subcategories were cell, cellular process, intracellular, catalytic activity and cytoplasm, which possessed 5600 (~9.99%), 5302 (~9.45%), 5242 (~9.35%), 4407 (~7.86%) and 4195 (~7.48%) unigenes, respectively. Furthermore, 59 unigenes were identified and assigned to 26 putative transcription factors (TFs), including 12 plant-specific TFs. They were likely associated with astaxanthin biosynthesis in Haematococcus upon SA and JA stress. In comparison, the up-regulation of differential expressed genes occurred much earlier, with higher transcript levels in the JA treatment (about 6 h later) than in the SA treatment (beyond 24 h). These results provide valuable information for directing metabolic engineering efforts to improve astaxanthin biosynthesis in H. pluvialis. PMID:26484871

  10. Integrated metabolomic and proteomic analysis reveals systemic responses of Rubrivivax benzoatilyticus JA2 to aniline stress.

    PubMed

    Mujahid, Md; Prasuna, M Lakshmi; Sasikala, Ch; Ramana, Ch Venkata

    2015-02-01

    Aromatic amines are widely distributed in the environment and are major environmental pollutants. Although degradation of aromatic amines is well studied in bacteria, physiological adaptations and stress response to these toxic compounds is not yet fully understood. In the present study, systemic responses of Rubrivivax benzoatilyticus JA2 to aniline stress were deciphered using metabolite and iTRAQ-labeled protein profiling. Strain JA2 tolerated high concentrations of aniline (30 mM) with trace amounts of aniline being transformed to acetanilide. GC-MS metabolite profiling revealed aniline stress phenotype wherein amino acid, carbohydrate, fatty acid, nitrogen metabolisms, and TCA (tricarboxylic acid cycle) were modulated. Strain JA2 responded to aniline by remodeling the proteome, and cellular functions, such as signaling, transcription, translation, stress tolerance, transport and carbohydrate metabolism, were highly modulated. Key adaptive responses, such as transcription/translational changes, molecular chaperones to control protein folding, and efflux pumps implicated in solvent extrusion, were induced in response to aniline stress. Proteo-metabolomics indicated extensive rewiring of metabolism to aniline. TCA cycle and amino acid catabolism were down-regulated while gluconeogenesis and pentose phosphate pathways were up-regulated, leading to the synthesis of extracellular polymeric substances. Furthermore, increased saturated fatty acid ratios in membranes due to aniline stress suggest membrane adaptation. The present study thus indicates that strain JA2 employs multilayered responses: stress response, toxic compound tolerance, energy conservation, and metabolic rearrangements to aniline. PMID:25388363

  11. Expansion and methylation status at FRAXE can be detected on EcoRI blots used for FRAXA diagnosis: Analysis of four FRAXE families with mild mental retardation in males

    SciTech Connect

    Biancalana, V.; Bouix, J.C.; Mandel, J.L.

    1996-10-01

    The original test for the analysis of the CCG expansion at the FRAXE locus involves Southern blot analysis of HindIII digests. We show that, by using a different probe, the FRAXE mutation can be detected easily on the same EcoRI or EagI+EcoRI blots as are used for detection of FRAXA. Unexpectedly, we found that both the expansion and methylation status can be determined on a single EcoRI digest, because of the presence of a methylation-sensitive EcoRI site very close to the CCG repeat. We thus detected in a series of mentally retarded individuals previously tested for FRAXA expansion a FRAXE proband who led to the identification of a large sibship (7 of 10 children carrying a mutation). We also show that two fragile X families without FRAXA mutation that previously have been described by Oberle et al. have the FRAXE expansion. In another family also ascertained initially by cytogenetic finding of a fragile X site, we performed the combined cytogenetic and molecular prenatal diagnosis of a mutated male fetus. All nine males (>3 years old) in whom we found a methylated mutation had mild mental retardation. Our results suggest that the threshold of repeat length for abnormal methylation and fragile-site expression may be smaller at FRAXE than at FRAXA. 20 refs., 5 figs., 1 tab.

  12. Partial Activation of SA- and JA-Defensive Pathways in Strawberry upon Colletotrichum acutatum Interaction.

    PubMed

    Amil-Ruiz, Francisco; Garrido-Gala, José; Gadea, José; Blanco-Portales, Rosario; Muñoz-Mérida, Antonio; Trelles, Oswaldo; de Los Santos, Berta; Arroyo, Francisco T; Aguado-Puig, Ana; Romero, Fernando; Mercado, José-Ángel; Pliego-Alfaro, Fernando; Muñoz-Blanco, Juan; Caballero, José L

    2016-01-01

    Understanding the nature of pathogen host interaction may help improve strawberry (Fragaria × ananassa) cultivars. Plant resistance to pathogenic agents usually operates through a complex network of defense mechanisms mediated by a diverse array of signaling molecules. In strawberry, resistance to a variety of pathogens has been reported to be mostly polygenic and quantitatively inherited, making it difficult to associate molecular markers with disease resistance genes. Colletotrichum acutatum spp. is a major strawberry pathogen, and completely resistant cultivars have not been reported. Moreover, strawberry defense network components and mechanisms remain largely unknown and poorly understood. Assessment of the strawberry response to C. acutatum included a global transcript analysis, and acidic hormones SA and JA measurements were analyzed after challenge with the pathogen. Induction of transcripts corresponding to the SA and JA signaling pathways and key genes controlling major steps within these defense pathways was detected. Accordingly, SA and JA accumulated in strawberry after infection. Contrastingly, induction of several important SA, JA, and oxidative stress-responsive defense genes, including FaPR1-1, FaLOX2, FaJAR1, FaPDF1, and FaGST1, was not detected, which suggests that specific branches in these defense pathways (those leading to FaPR1-2, FaPR2-1, FaPR2-2, FaAOS, FaPR5, and FaPR10) were activated. Our results reveal that specific aspects in SA and JA dependent signaling pathways are activated in strawberry upon interaction with C. acutatum. Certain described defense-associated transcripts related to these two known signaling pathways do not increase in abundance following infection. This finding suggests new insight into a specific putative molecular strategy for defense against this pathogen. PMID:27471515

  13. Partial Activation of SA- and JA-Defensive Pathways in Strawberry upon Colletotrichum acutatum Interaction.

    PubMed

    Amil-Ruiz, Francisco; Garrido-Gala, José; Gadea, José; Blanco-Portales, Rosario; Muñoz-Mérida, Antonio; Trelles, Oswaldo; de Los Santos, Berta; Arroyo, Francisco T; Aguado-Puig, Ana; Romero, Fernando; Mercado, José-Ángel; Pliego-Alfaro, Fernando; Muñoz-Blanco, Juan; Caballero, José L

    2016-01-01

    Understanding the nature of pathogen host interaction may help improve strawberry (Fragaria × ananassa) cultivars. Plant resistance to pathogenic agents usually operates through a complex network of defense mechanisms mediated by a diverse array of signaling molecules. In strawberry, resistance to a variety of pathogens has been reported to be mostly polygenic and quantitatively inherited, making it difficult to associate molecular markers with disease resistance genes. Colletotrichum acutatum spp. is a major strawberry pathogen, and completely resistant cultivars have not been reported. Moreover, strawberry defense network components and mechanisms remain largely unknown and poorly understood. Assessment of the strawberry response to C. acutatum included a global transcript analysis, and acidic hormones SA and JA measurements were analyzed after challenge with the pathogen. Induction of transcripts corresponding to the SA and JA signaling pathways and key genes controlling major steps within these defense pathways was detected. Accordingly, SA and JA accumulated in strawberry after infection. Contrastingly, induction of several important SA, JA, and oxidative stress-responsive defense genes, including FaPR1-1, FaLOX2, FaJAR1, FaPDF1, and FaGST1, was not detected, which suggests that specific branches in these defense pathways (those leading to FaPR1-2, FaPR2-1, FaPR2-2, FaAOS, FaPR5, and FaPR10) were activated. Our results reveal that specific aspects in SA and JA dependent signaling pathways are activated in strawberry upon interaction with C. acutatum. Certain described defense-associated transcripts related to these two known signaling pathways do not increase in abundance following infection. This finding suggests new insight into a specific putative molecular strategy for defense against this pathogen.

  14. Partial Activation of SA- and JA-Defensive Pathways in Strawberry upon Colletotrichum acutatum Interaction

    PubMed Central

    Amil-Ruiz, Francisco; Garrido-Gala, José; Gadea, José; Blanco-Portales, Rosario; Muñoz-Mérida, Antonio; Trelles, Oswaldo; de los Santos, Berta; Arroyo, Francisco T.; Aguado-Puig, Ana; Romero, Fernando; Mercado, José-Ángel; Pliego-Alfaro, Fernando; Muñoz-Blanco, Juan; Caballero, José L.

    2016-01-01

    Understanding the nature of pathogen host interaction may help improve strawberry (Fragaria × ananassa) cultivars. Plant resistance to pathogenic agents usually operates through a complex network of defense mechanisms mediated by a diverse array of signaling molecules. In strawberry, resistance to a variety of pathogens has been reported to be mostly polygenic and quantitatively inherited, making it difficult to associate molecular markers with disease resistance genes. Colletotrichum acutatum spp. is a major strawberry pathogen, and completely resistant cultivars have not been reported. Moreover, strawberry defense network components and mechanisms remain largely unknown and poorly understood. Assessment of the strawberry response to C. acutatum included a global transcript analysis, and acidic hormones SA and JA measurements were analyzed after challenge with the pathogen. Induction of transcripts corresponding to the SA and JA signaling pathways and key genes controlling major steps within these defense pathways was detected. Accordingly, SA and JA accumulated in strawberry after infection. Contrastingly, induction of several important SA, JA, and oxidative stress-responsive defense genes, including FaPR1-1, FaLOX2, FaJAR1, FaPDF1, and FaGST1, was not detected, which suggests that specific branches in these defense pathways (those leading to FaPR1-2, FaPR2-1, FaPR2-2, FaAOS, FaPR5, and FaPR10) were activated. Our results reveal that specific aspects in SA and JA dependent signaling pathways are activated in strawberry upon interaction with C. acutatum. Certain described defense-associated transcripts related to these two known signaling pathways do not increase in abundance following infection. This finding suggests new insight into a specific putative molecular strategy for defense against this pathogen. PMID:27471515

  15. Total and partial sleep deprivation: Effects on plasma TNF-αRI, TNF-αRII, and IL-6, and reversal by caffeine operating through adenosine A2 receptor

    NASA Astrophysics Data System (ADS)

    Shearer, William T.; Reuben, James M.; Lee, Bang-Ning; Mullington, Janet; Price, Nicholas; Dinges, David F.

    2000-01-01

    Plasma levels of IL-6 and TNF-α are elevated in individuals who are deprived of sleep. TNF-α regulates expression of its soluble receptors, sTNF-αRI and sTNF-αRII. Sleep deprivation (SD) also increases extracellular adenosine that induces sedation and sleep. An antagonist of adenosine, caffeine, raises exogenous adenosine levels, stimulates the expression of IL-6 and inhibits the release of TNF-α. Our objective was to determine the effect of total SD (TSD) or partial SD (PSD) on the levels of these sleep regulatory molecules in volunteers who experienced SD with or without the consumption of caffeine. Plasma levels of IL-6, sTNF-αRI and sTNF-αRII were assayed by ELISA in samples collected at 90-min intervals from each subject over an 88-hour period. The results were analyzed by the repeated measures ANOVA. Whereas only TSD significantly increased sTNF-αRI over time, caffeine suppressed both sTNF-α receptors in TSD and PSD subjects. The selective increase in the expression of sTNF-αRI and not sTNF-αRII in subjects experiencing TSD with caffeine compared with others experiencing PSD with caffeine has not been previously reported. Moreover, caffeine significantly increased IL-6 in TSD subjects compared with those who did not receive caffeine. However, subjects who were permitted intermittent naps (PSD) ablated the effects of caffeine and reduced their level of IL-6 to that of the TSD group. These data further lend support to the hypothesis that the sTNF-αRI and not the sTNF-αRII plays a significant role in sleep regulation by TNF-α. .

  16. Fer and Fps/Fes participate in a Lyn-dependent pathway from FcepsilonRI to platelet-endothelial cell adhesion molecule 1 to limit mast cell activation.

    PubMed

    Udell, Christian M; Samayawardhena, Lionel A; Kawakami, Yuko; Kawakami, Toshiaki; Craig, Andrew W B

    2006-07-28

    Mast cells express the high affinity IgE receptor FcepsilonRI, which upon aggregation by multivalent antigens elicits signals that cause rapid changes within the mast cell and in the surrounding tissue. We previously showed that FcepsilonRI aggregation caused a rapid increase in phosphorylation of both Fer and Fps/Fes kinases in bone marrow-derived mast cells. In this study, we report that FcepsilonRI aggregation leads to increased Fer/Fps kinase activities and that Fer phosphorylation downstream of FcepsilonRI is independent of Syk, Fyn, and Gab2 but requires Lyn. Activated Fer/Fps readily phosphorylate the C terminus of platelet-endothelial cell adhesion molecule 1 (Pecam-1) on immunoreceptor tyrosine-based inhibitory motifs (ITIMs) and a non-ITIM residue (Tyr(700)) in vitro and in transfected cells. Mast cells devoid of Fer/Fps kinase activities display a reduction in FcepsilonRI aggregation-induced tyrosine phosphorylation of Pecam-1, with no defects in recruitment of Shp1/Shp2 phosphatases observed. Lyn-deficient mast cells display a dramatic reduction in Pecam-1 phosphorylation at Tyr(685) and a complete loss of Shp2 recruitment, suggesting a role as an initiator kinase for Pecam-1. Consistent with previous studies of Pecam-1-deficient mast cells, we observe an exaggerated degranulation response in mast cells lacking Fer/Fps kinases at low antigen dosages. Thus, Lyn and Fer/Fps kinases cooperate to phosphorylate Pecam-1 and activate Shp1/Shp2 phosphatases that function in part to limit mast cell activation. PMID:16731527

  17. KEY COMPARISON: Comparisons CCRI(II)-K3.F-18 and APMP.RI(II)-K3.F-18 of activity measurements of the radionuclide 18F and links to the key comparison reference value of the BIPM.RI(II)-K1.F-18 comparison

    NASA Astrophysics Data System (ADS)

    Ratel, G.; Michotte, C.; Woods, M. J.

    2005-01-01

    In 2003, the CCRI(II) decided that an indirect comparison of 18F measurements piloted by the National Physical Laboratory (NPL), UK in 2001 was sufficiently well constructed that it could be converted into a CCRI(II) comparison, with comparison identifier CCRI(II)-K3.F-18. At the same time, the pilot laboratory made a bilateral comparison with the institute in Chinese Taipei, comparison identifier APMP.RI(II)-K3.F-18. The results of the comparisons have been reported and the key comparison working group (KCWG) of the CCRI(II) has approved the mechanism to link all the results to the key comparison reference value (KCRV) of 18F. The KCRV has been determined through the International Reference System (SIR) for activity comparison at the Bureau International des Poids et Mesures (BIPM), with comparison identifier BIPM.RI(II)-K1.F-18. These comparisons have enabled a further four results to be added to the matrix of degrees of equivalence for 18F activity measurements. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by Section II of the Consultative Committee for Ionizing Radiation (CCRI(II)), according to the provisions of the Mutual Recognition Arrangement (MRA).

  18. New enhanced artificial bee colony (JA-ABC5) algorithm with application for reactive power optimization.

    PubMed

    Sulaiman, Noorazliza; Mohamad-Saleh, Junita; Abro, Abdul Ghani

    2015-01-01

    The standard artificial bee colony (ABC) algorithm involves exploration and exploitation processes which need to be balanced for enhanced performance. This paper proposes a new modified ABC algorithm named JA-ABC5 to enhance convergence speed and improve the ability to reach the global optimum by balancing exploration and exploitation processes. New stages have been proposed at the earlier stages of the algorithm to increase the exploitation process. Besides that, modified mutation equations have also been introduced in the employed and onlooker-bees phases to balance the two processes. The performance of JA-ABC5 has been analyzed on 27 commonly used benchmark functions and tested to optimize the reactive power optimization problem. The performance results have clearly shown that the newly proposed algorithm has outperformed other compared algorithms in terms of convergence speed and global optimum achievement.

  19. Physiological impacts of ABA-JA interactions under water-limitation.

    PubMed

    de Ollas, Carlos; Dodd, Ian C

    2016-08-01

    Plant responses to drought stress depend on highly regulated signal transduction pathways with multiple interactions. This complex crosstalk can lead to a physiological outcome of drought avoidance or tolerance/resistance. ABA is the principal mediator of these responses due to the regulation of stomatal closure that determines plant growth and survival, but also other strategies of drought resistance such as osmotic adjustment. However, other hormones such as JA seem responsible for regulating a subset of plant responses to drought by regulating ABA biosynthesis and accumulation and ABA-dependent signalling, but also by ABA independent pathways. Here, we review recent reports of ABA-JA hormonal and molecular interactions within a physiological framework of drought tolerance. Understanding the physiological significance of this complex regulation offers opportunities to find strategies of drought tolerance that avoid unwanted side effects that limit growth and yield, and may allow biotechnological crop improvement. PMID:27299601

  20. A self-adaptive genetic algorithm to estimate JA model parameters considering minor loops

    NASA Astrophysics Data System (ADS)

    Lu, Hai-liang; Wen, Xi-shan; Lan, Lei; An, Yun-zhu; Li, Xiao-ping

    2015-01-01

    A self-adaptive genetic algorithm for estimating Jiles-Atherton (JA) magnetic hysteresis model parameters is presented. The fitness function is established based on the distances between equidistant key points of normalized hysteresis loops. Linearity function and logarithm function are both adopted to code the five parameters of JA model. Roulette wheel selection is used and the selection pressure is adjusted adaptively by deducting a proportional which depends on current generation common value. The Crossover operator is established by combining arithmetic crossover and multipoint crossover. Nonuniform mutation is improved by adjusting the mutation ratio adaptively. The algorithm is used to estimate the parameters of one kind of silicon-steel sheet's hysteresis loops, and the results are in good agreement with published data.

  1. Physiological impacts of ABA-JA interactions under water-limitation.

    PubMed

    de Ollas, Carlos; Dodd, Ian C

    2016-08-01

    Plant responses to drought stress depend on highly regulated signal transduction pathways with multiple interactions. This complex crosstalk can lead to a physiological outcome of drought avoidance or tolerance/resistance. ABA is the principal mediator of these responses due to the regulation of stomatal closure that determines plant growth and survival, but also other strategies of drought resistance such as osmotic adjustment. However, other hormones such as JA seem responsible for regulating a subset of plant responses to drought by regulating ABA biosynthesis and accumulation and ABA-dependent signalling, but also by ABA independent pathways. Here, we review recent reports of ABA-JA hormonal and molecular interactions within a physiological framework of drought tolerance. Understanding the physiological significance of this complex regulation offers opportunities to find strategies of drought tolerance that avoid unwanted side effects that limit growth and yield, and may allow biotechnological crop improvement.

  2. New Enhanced Artificial Bee Colony (JA-ABC5) Algorithm with Application for Reactive Power Optimization

    PubMed Central

    2015-01-01

    The standard artificial bee colony (ABC) algorithm involves exploration and exploitation processes which need to be balanced for enhanced performance. This paper proposes a new modified ABC algorithm named JA-ABC5 to enhance convergence speed and improve the ability to reach the global optimum by balancing exploration and exploitation processes. New stages have been proposed at the earlier stages of the algorithm to increase the exploitation process. Besides that, modified mutation equations have also been introduced in the employed and onlooker-bees phases to balance the two processes. The performance of JA-ABC5 has been analyzed on 27 commonly used benchmark functions and tested to optimize the reactive power optimization problem. The performance results have clearly shown that the newly proposed algorithm has outperformed other compared algorithms in terms of convergence speed and global optimum achievement. PMID:25879054

  3. Aniline is an inducer, and not a precursor, for indole derivatives in Rubrivivax benzoatilyticus JA2.

    PubMed

    Mujahid, Mohammed; Sasikala, Ch; Ramana, Ch V

    2014-01-01

    Rubrivivax benzoatilyticus JA2 and other anoxygenic photosynthetic bacteria produce indole derivatives when exposed to aniline, a xenobiotic compound. Though this phenomenon has been reported previously, the role of aniline in the production of indoles is still a biochemical riddle. The present study aims at understanding the specific role of aniline (as precursor or stimulator) in the production of indoles and elucidating the biochemical pathway of indoles in aniline-exposed cells by using stable isotope approaches. Metabolic profiling revealed tryptophan accumulation only in aniline exposed cells along with indole 3-acetic acid (IAA) and indole 3-aldehyde (IAld), the two major catabolites of tryptophan. Deuterium labelled aniline feeding studies revealed that aniline is not a precursor of indoles in strain JA2. Further, production of indoles only in aniline-exposed cells suggests that aniline is an indoles stimulator. In addition, production of indoles depended on the presence of a carbon source, and production enhanced when carbon sources were added to the culture. Isotope labelled fumarate feeding identified, fumarate as the precursor of indole, indicating de novo synthesis of indoles. Glyphosate (shikimate pathway inhibitor) inhibited the indoles production, accumulation of tryptophan, IAA and IAld indicating that indoles synthesis in strain JA2 occurs via the de novo shikimate pathway. The up-regulation of anthranilate synthase gene and induction of anthranilate synthase activity correlated well with tryptophan production in strain JA2. Induction of tryptophan aminotransferase and tryptophan 2-monooxygenase activities corroborated well with IAA levels, suggesting that tryptophan catabolism occurs simultaneously in aniline exposed cells. Our study demonstrates that aniline (stress) stimulates tryptophan/indoles synthesis via the shikimate pathway by possibly modulating the metabolic pathway.

  4. Biosynthesis of silver and zinc oxide nanoparticles using Pichia fermentans JA2 and their antimicrobial property

    NASA Astrophysics Data System (ADS)

    Chauhan, Ritika; Reddy, Arpita; Abraham, Jayanthi

    2015-01-01

    The development of eco-friendly alternative to chemical synthesis of metal nanoparticles is of great challenge among researchers. The present study aimed to investigate the biological synthesis, characterization, antimicrobial study and synergistic effect of silver and zinc oxide nanoparticles against clinical pathogens using Pichia fermentans JA2. The extracellular biosynthesis of silver and zinc oxide nanoparticles was investigated using Pichia fermentans JA2 isolated from spoiled fruit pulp bought in Vellore local market. The crystalline and stable metallic nanoparticles were characterized evolving several analytical techniques including UV-visible spectrophotometer, X-ray diffraction pattern analysis and FE-scanning electron microscope with EDX-analysis. The biosynthesized metallic nanoparticles were tested for their antimicrobial property against medically important Gram positive, Gram negative and fungal pathogenic microorganisms. Furthermore, the biosynthesized nanoparticles were also evaluated for their increased antimicrobial activities with various commercially available antibiotics against clinical pathogens. The biosynthesized silver nanoparticles inhibited most of the Gram negative clinical pathogens, whereas zinc oxide nanoparticles were able to inhibit only Pseudomonas aeruginosa. The combined effect of standard antibiotic disc and biosynthesized metallic nanoparticles enhanced the inhibitory effect against clinical pathogens. The biological synthesis of silver and zinc oxide nanoparticles is a novel and cost-effective approach over harmful chemical synthesis techniques. The metallic nanoparticles synthesized using Pichia fermentans JA2 possess potent inhibitory effect that offers valuable contribution to pharmaceutical associations.

  5. Going beyond 2D: following membrane diffusion and topography in the IgE-Fc[epsilon]RI system using 3-dimensional tracking microscopy

    NASA Astrophysics Data System (ADS)

    Wells, Nathan P.; Lessard, Guillaume A.; Phipps, Mary E.; Goodwin, Peter M.; Lidke, Diane S.; Wilson, Bridget S.; Werner, James H.

    2009-02-01

    The ability to follow and observe single molecules as they function in live cells represents a major milestone for molecular-cellular biology. Here we present a tracking microscope that is able to track quantum dots in three dimensions and simultaneously record time-resolved emission statistics from a single dot. This innovative microscopy approach is based on four spatial filters and closed loop feedback to constantly keep a single quantum dot in the focal spot. Using this microscope, we demonstrate the ability to follow quantum dot labeled IgE antibodies bound to FcɛRI membrane receptors in live RBL-2H3 cells. The results are consistent with prior studies of two dimensional membrane diffusion (Andrews et al., Nat. Cell Biol., 10, 955, 2008). In addition, the microscope captures motion in the axial (Z) direction, which permits tracking of diffusing receptors relative to the "hills and valleys" of the dynamically changing membrane landscape. This approach is uniquely capable of following single molecule dynamics on live cells with three dimensional spatial resolution.

  6. Biosorption of Congo Red from aqueous solution by Bacillus weihenstephanensis RI12; effect of SPB1 biosurfactant addition on biodecolorization potency.

    PubMed

    Mnif, Inès; Fendri, Raouia; Ghribi, Dhouha

    2015-01-01

    Bacillus weihenstephanensis RI12, isolated from hydrocarbon contaminated soil, was assessed for Congo Red bio-treatment potency. Results suggested the potential of this bacterium for use in effective treatment of Congo Red contaminated wastewaters under shaking conditions at acidic and neutral pH value. The strain could tolerate higher doses of dyes as it could decolorize up to 1,000 mg/l of Congo Red. When used as microbial surfactant to enhance Congo Red biodecolorization, Bacillus subtilis SPB1-derived lipopeptide accelerated the decolorization rate and maximized the decolorization efficiency at an optimal concentration of biosurfactant of about 0.075%. Studies ensured that Congo Red removal by this strain could be due to an adsorption phenomena. Germination potencies of tomato seeds using the treated dyes under different conditions showed the efficient biotreatment of the azo dye Congo Red especially with the addition of SPB1 biosurfactant. To conclude, the addition of SPB1 bioemulsifier reduced energy costs by reducing the effective decolorization period; the biosurfactant stimulated bacterial decolorization method may provide a highly efficient, inexpensive and time-saving procedure in the treatment of textile effluents.

  7. Simultaneous determination of glucose, fructose, sucrose and sorbitol in the leaf and fruit peel of different apple cultivars by the HPLC-RI optimized method.

    PubMed

    Filip, Miuţa; Vlassa, Mihaela; Coman, Virginia; Halmagyi, Adela

    2016-05-15

    A high performance liquid chromatography method with refractive index detection (HPLC-RI), for simultaneous determination of glucose, fructose, sucrose and sorbitol in leaf and/or apple peel samples from nine apple (Malus domestica Borkh.) cultivars and rootstocks, originating from a germplasm collection, has been developed and validated. Box-Behnken design of response surface methodology was applied for the method optimization. The Carbosep Coregel 87H3 column was used under the optimum conditions predicted: mobile phase of H2SO4 0.005 mol L(-1) solution, flow rate of 0.3 mL min(-1) and column temperature of 35°C. The method was validated for linearity (R(2)>0.99), limits of detection (2.67-4.83 μg mL(-1)) and quantification (8.9-16.1 μg mL(-1)), precision (%RSD<5.05) and recovery (93.94-103.06%) and satisfactory results obtained. The sugars content varied across micropropagated plants in vitro, plants regenerated after cryostorage, growing trees in vivo, and fruit peel.

  8. Asiaticoside suppresses collagen expression and TGF-β/Smad signaling through inducing Smad7 and inhibiting TGF-βRI and TGF-βRII in keloid fibroblasts.

    PubMed

    Tang, Bing; Zhu, Bin; Liang, Yueying; Bi, Liangkuan; Hu, Zhicheng; Chen, Bin; Zhang, Kai; Zhu, Jiayuan

    2011-10-01

    Asiaticoside (ATS) isolated from the leaves of Centella asiatica possesses strong wound-healing properties and reduces scar formation. However, the specific effects of asiaticoside on the formation of keloidal scars remain unknown. In the present study, we evaluated the in vitro effects of asiaticoside on the proliferation, collagen expression, and transforming growth factor (TGF)-β/Smad signaling of keloid-derived fibroblasts. Fibroblasts isolated from keloid tissue and normal skin tissues were treated with asiaticoside at different concentrations. Afterwards, they were subjected to RT-PCR and Western blot analyses. The inhibitory effects of asiaticoside on fibroblast viability were assayed using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. Asiaticoside decreased fibroblast proliferation in a time- and dose-dependent manner. It also inhibited type I and type III collagen protein and mRNA expressions. In addition, asiaticoside reduced the expression of both TGF-βRI and TGF-βRII at the transcriptional and translational level. Moreover, it increased the expression of Smad7 protein and mRNA. However, asiaticoside did not influence the expression of Smad2, Smad3, Smad4, phosphorylated Smad2, and phosphorylated Smad3. Taken together, these results suggest that asiaticoside could be of potential use in the treatment and/or prevention of hypertrophic scars and keloids.

  9. KEY COMPARISON: APMP/TCRI key comparison report of measurement of air kerma for medium-energy x-rays (APMP.RI(I)-K3)

    NASA Astrophysics Data System (ADS)

    Lee, J. H.; Hwang, W. S.; Kotler, L. H.; Webb, D. V.; Büermann, L.; Burns, D. T.; Takeyeddin, M.; Shaha, V. V.; Srimanoroth, S.; Meghzifene, A.; Hah, S. H.; Chun, K. J.; Kadni, T. B.; Takata, N.; Msimang, Z.

    2008-01-01

    The APMP/TCRI Dosimetry Working Group performed the APMP.RI(I)-K3 key comparison of measurement of air kerma for medium-energy x-rays (100 kV to 250 kV) between 2000 and 2003. In total, 11 institutes took part in the comparison, among which 8 were APMP member laboratories. Two commercial cavity ionization chambers were used as transfer instruments and circulated among the participants. All the participants established the 100 kV, 135 kV, 180 kV and 250 kV x-ray beam qualities equivalent to those of the BIPM. The results showed that the maximum difference between the participants and the BIPM in the medium-energy x ray range, evaluated using the comparison data of the linking laboratories ARPANSA and PTB, is less than 1.4%. The degrees of equivalence between the participants are presented and this comparison confirms the calibration capabilities of the participating laboratories. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI Section I, according to the provisions of the CIPM Mutual Recognition Arrangement (MRA).

  10. Identification of a Gypsy SHOX mutation (p.A170P) in Léri-Weill dyschondrosteosis and Langer mesomelic dysplasia

    PubMed Central

    Barca-Tierno, Verónica; Aza-Carmona, Miriam; Barroso, Eva; Heine-Suner, Damia; Azmanov, Dimitar; Rosell, Jordi; Ezquieta, Begoña; Montané, Lucia Sentchordi; Vendrell, Teresa; Cruz, Jaime; Santos, Fernando; Rodríguez, José Ignacio; Pozo, Jesús; Argente, Jesús; Kalaydjieva, Luba; Gracía, Ricardo; Campos-Barros, Ángel; Benito-Sanz, Sara; Heath, Karen E

    2011-01-01

    We report the clinical and molecular characteristics of 12 Spanish families with multiple members affected with Léri-Weill dyschondrosteosis (LWD) or Langer mesomelic dysplasia (LMD), who present the SHOX (short stature homeobox gene) mutation p.A170P (c.508G>C) in heterozygosity or homozygosity, respectively. In all studied families, the A170P mutation co-segregated with the fully penetrant phenotype of mesomelic limb shortening and Madelung deformity. A shared haplotype around SHOX was observed by microsatellite analysis, confirming the presence of a common ancestor, probably of Gypsy origin, as 11 of the families were of this ethnic group. Mutation screening in 359 Eastern-European Gypsies failed to identify any carriers. For the first time, we have shown SHOX expression in the human growth plate of a 22-week LMD fetus, homozygous for the A170P mutation. Although the mutant SHOX protein was expressed in all zones of the growth plate, the chondrocyte columns in the proliferative zone were disorganized with the chondrocytes occurring in smaller columnal clusters. We have also identified a novel mutation at the same residue, c. 509C>A (p.A170D), in two unrelated Spanish LWD families, which similar to A170P mutation impedes nuclear localization of SHOX. In conclusion, we have identified A170P as the first frequent SHOX mutation in Gypsy LWD and LMD individuals. PMID:21712857

  11. KEY COMPARISON: COOMET.RI(I)-K1 comparison of national measurement standards of air kerma for 60Co γ radiation

    NASA Astrophysics Data System (ADS)

    Büermann, L.; Oborin, A. V.; Dobrovosky, J.; Milevsky, V. S.; Walwyn Salas, G.; Lapenas, A.

    2009-01-01

    Results are presented of the COOMET key comparison of the national measurement standards of air kerma for 60Co γ radiation. Participants of the comparison were PTB (Germany, pilot institute), VNIIM (Russia), SMU (Slovakia), BelGIM (Belarus), CPHR (Cuba) and RMTC (Latvia). PTB, VNIIM and SMU had previously taken part in a key comparison with the Bureau International de Poids et Mesures (BIPM) and operated as link laboratories in order to evaluate the degree of equivalence of the participants' results with the key comparison reference value. These data form the basis of the results entered into the BIPM key comparison database for comparison COOMET.RI(I)-K1. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI Section I, according to the provisions of the CIPM Mutual Recognition Arrangement (MRA).

  12. Analysis for measuring the interaction of groundwater and river water by using Radon-222: A case study in Yangsu-ri, Korea

    NASA Astrophysics Data System (ADS)

    Kim, J.; Lee, K. K.

    2014-12-01

    The water cycle is essential for the maintenance of ecosystems. Above all, water exchange between groundwater and river water has a significant impact on the water quality and hydrological zones. The natural radiogenic tracers such as Radon-222 can be used as good indicator for measuring the interaction between groundwater and river water even though the conventional methods of analysis are direct measurements of water flux, heat tracer methods, mass balance approaches and methods based on Darcy's law. The object of this study is to know the change of water environment and to do water resource management effectively by studying the interaction between groundwater and river water in Yangsu-ri of Korea. This paper used methods using temperature profiles, EC values, DO values and radon tracer. In this study, diurnal and seasonal variation of radon value was measured with other values. The result values proved that the more the region was influenced by river water, the closer to the values of river water the result values are. The radon value indicated a similar pattern with other values. The analysis also applied river water stage change by dam discharge. In addition, the mixing modeling of groundwater and river water was conducted to confirm the difference between the calculated value and the measured value. It turned out that radon tracer can be used as environmental tracer for analysis of the interaction between groundwater and river water.

  13. Update of the BIPM comparison BIPM.RI(II)-K1.F-18 of activity measurements of the radionuclide 18F to include the 2010 result of the LNE-LNHB (France)

    NASA Astrophysics Data System (ADS)

    Michotte, C.; Ratel, G.; Courte, S.; Cassette, P.; Moune, M.

    2016-01-01

    Since 2001, six national metrology institutes (NMI) have submitted seven samples of known activity of 18F to the International Reference System (SIR) for activity comparison at the Bureau International des Poids et Mesures (BIPM), with comparison identifier BIPM.RI(II)-K1.F-18. The values of the activity submitted were between about 1 MBq and 18 MBq. The primary standardization result for the LNE-LNHB, France, replaces their earlier result of 2002 and the key comparison reference value (KCRV) has been recalculated. In the frame of the BIPM.RI(II)-K4.F18 comparison, the NPL updated their result in the KCDB. Consequently there are now five results in the BIPM.RI(II)-K1.F-18 comparison. The degrees of equivalence between each equivalent activity measured in the SIR and the updated KCRV have been calculated and the results are given in the form of a table. A graphical presentation is also given. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  14. Priming for JA-dependent defenses using hexanoic acid is an effective mechanism to protect Arabidopsis against B. cinerea.

    PubMed

    Kravchuk, Zhana; Vicedo, Begonya; Flors, Víctor; Camañes, Gemma; González-Bosch, Carmen; García-Agustín, Pilar

    2011-03-01

    Soil drench treatments with hexanoic acid can effectively protect Arabidopsis plants against Botrytis cinerea through a mechanism based on a stronger and faster accumulation of JA-dependent defenses. Plants impaired in ethylene, salicylic acid, abscisic acid or glutathion pathways showed intact protection by hexanoic acid upon B. cinerea infection. Accordingly, no significant changes in the SA marker gene PR-1 in either the SA or ABA hormone balance were observed in the infected and treated plants. In contrast, the JA signaling pathway showed dramatic changes after hexanoic acid treatment, mainly when the pathogen was present. The impaired JA mutants, jin1-2 and jar1, were unable to display hexanoic acid priming against the necrotroph. In addition, hexanoic acid-treated plants infected with B. cinerea showed priming in the expression of the PDF1.2, PR-4 and VSP1 genes implicated in the JA pathways. Moreover, JA and OPDA levels were primed at early stages by hexanoic acid. Treatments also stimulated increased callose accumulation in response to the pathogen. Although callose accumulation has proved an effective IR mechanism against B. cinerea, it is apparently not essential to express hexanoic acid-induced resistance (HxAc-IR) because the mutant pmr4.1 (callose synthesis defective mutant) is protected by treatment. We recently described how hexanoic acid treatments can protect tomato plants against B. cinerea by stimulating ABA-dependent callose deposition and by priming OPDA and JA-Ile production. We clearly demonstrate here that Hx-IR is a dependent plant species, since this acid protects Arabidopsis plants against the same necrotroph by priming JA-dependent defenses without enhancing callose accumulation.

  15. Elevated CO2 influences nematode-induced defense responses of tomato genotypes differing in the JA pathway.

    PubMed

    Sun, Yucheng; Yin, Jin; Cao, Haifeng; Li, Chuanyou; Kang, Le; Ge, Feng

    2011-01-01

    Rising atmospheric CO(2) concentrations can affect the induced defense of plants against chewing herbivores but little is known about whether elevated CO(2) can change the induced defense of plants against parasitic nematodes. This study examined the interactions between the root-knot nematode Meloidogyne incognita and three isogenic tomato (Lycopersicon esculentum) genotypes grown under ambient (390 ppm) and elevated (750 ppm) CO(2) in growth chambers. In a previous study with open-top chambers in the field, we reported that elevated CO(2) increased the number of nematode-induced root galls in a JA-defense-dominated genotype but not in a wild-type or JA-defense-recessive genotype. In the current study, we tested the hypothesis that elevated CO(2) will favor the salicylic acid (SA)-pathway defense but repress the jasmonic acid (JA)-pathway defense of plants against plant-parasitic nematodes. Our data showed that elevated CO(2) reduced the JA-pathway defense against M. incognita in the wild-type and in a genotype in which defense is dominated by the JA pathway (a JA-defense-dominated genotype) but up-regulated the SA-pathway defense in the wild type and in a JA-defense-recessive genotype (jasmonate-deficient mutant). Our results suggest that, in terms of defense genes, secondary metabolites, and volatile organic compounds, induced defense of nematode-infected plants could be affected by elevated CO(2), and that CO(2)-induced changes of plant resistance may lead to genotype-specific responses of plants to nematodes under elevated CO(2). The changes in resistance against nematodes, however, were small relative to those reported for chewing insects. PMID:21629688

  16. Elevated CO2 Influences Nematode-Induced Defense Responses of Tomato Genotypes Differing in the JA Pathway

    PubMed Central

    Sun, Yucheng; Yin, Jin; Cao, Haifeng; Li, Chuanyou; Kang, Le; Ge, Feng

    2011-01-01

    Rising atmospheric CO2 concentrations can affect the induced defense of plants against chewing herbivores but little is known about whether elevated CO2 can change the induced defense of plants against parasitic nematodes. This study examined the interactions between the root-knot nematode Meloidogyne incognita and three isogenic tomato (Lycopersicon esculentum) genotypes grown under ambient (390 ppm) and elevated (750 ppm) CO2 in growth chambers. In a previous study with open-top chambers in the field, we reported that elevated CO2 increased the number of nematode-induced root galls in a JA-defense-dominated genotype but not in a wild-type or JA-defense-recessive genotype. In the current study, we tested the hypothesis that elevated CO2 will favor the salicylic acid (SA)-pathway defense but repress the jasmonic acid (JA)-pathway defense of plants against plant-parasitic nematodes. Our data showed that elevated CO2 reduced the JA-pathway defense against M. incognita in the wild-type and in a genotype in which defense is dominated by the JA pathway (a JA-defense-dominated genotype) but up-regulated the SA-pathway defense in the wild type and in a JA-defense-recessive genotype (jasmonate-deficient mutant). Our results suggest that, in terms of defense genes, secondary metabolites, and volatile organic compounds, induced defense of nematode-infected plants could be affected by elevated CO2, and that CO2-induced changes of plant resistance may lead to genotype-specific responses of plants to nematodes under elevated CO2. The changes in resistance against nematodes, however, were small relative to those reported for chewing insects. PMID:21629688

  17. R3(BDelta23 27)R/I5 chimeric peptide, a selective antagonist for GPCR135 and GPCR142 over relaxin receptor LGR7: in vitro and in vivo characterization.

    PubMed

    Kuei, Chester; Sutton, Steven; Bonaventure, Pascal; Pudiak, Cindy; Shelton, Jonathan; Zhu, Jessica; Nepomuceno, Diane; Wu, Jiejun; Chen, Jingcai; Kamme, Fredrik; Seierstad, Mark; Hack, Michael D; Bathgate, Ross A D; Hossain, Mohammed Akhter; Wade, John D; Atack, John; Lovenberg, Timothy W; Liu, Changlu

    2007-08-31

    Both relaxin-3 and its receptor (GPCR135) are expressed predominantly in brain regions known to play important roles in processing sensory signals. Recent studies have shown that relaxin-3 is involved in the regulation of stress and feeding behaviors. The mechanisms underlying the involvement of relaxin-3/GPCR135 in the regulation of stress, feeding, and other potential functions remain to be studied. Because relaxin-3 also activates the relaxin receptor (LGR7), which is also expressed in the brain, selective GPCR135 agonists and antagonists are crucial to the study of the physiological functions of relaxin-3 and GPCR135 in vivo. Previously, we reported the creation of a selective GPCR135 agonist (a chimeric relaxin-3/INSL5 peptide designated R3/I5). In this report, we describe the creation of a high affinity antagonist for GPCR135 and GPCR142 over LGR7. This GPCR135 antagonist, R3(BDelta23-27)R/I5, consists of the relaxin-3 B-chain with a replacement of Gly23 to Arg, a truncation at the C terminus (Gly24-Trp27 deleted), and the A-chain of INSL5. In vitro pharmacological studies showed that R3(BDelta23-27)R/I5 binds to human GPCR135 (IC50=0.67 nM) and GPCR142 (IC50=2.29 nM) with high affinity and is a potent functional GPCR135 antagonist (pA2=9.15) but is not a human LGR7 ligand. Furthermore, R3(BDelta23-27)R/I5 had a similar binding profile at the rat GPCR135 receptor (IC50=0.25 nM, pA2=9.6) and lacked affinity for the rat LGR7 receptor. When administered to rats intracerebroventricularly, R3(BDelta23-27)R/I5 blocked food intake induced by the GPCR135 selective agonist R3/I5. Thus, R3(BDelta23-27)R/I5 should prove a useful tool for the further delineation of the functions of the relaxin-3/GPCR135 system.

  18. Sustainable management of river oases along the Tarim River (SuMaRiO) in Northwest China under conditions of climate change

    NASA Astrophysics Data System (ADS)

    Rumbaur, C.; Thevs, N.; Disse, M.; Ahlheim, M.; Brieden, A.; Cyffka, B.; Duethmann, D.; Feike, T.; Frör, O.; Gärtner, P.; Halik, Ü.; Hill, J.; Hinnenthal, M.; Keilholz, P.; Kleinschmit, B.; Krysanova, V.; Kuba, M.; Mader, S.; Menz, C.; Othmanli, H.; Pelz, S.; Schroeder, M.; Siew, T. F.; Stender, V.; Stahr, K.; Thomas, F. M.; Welp, M.; Wortmann, M.; Zhao, X.; Chen, X.; Jiang, T.; Luo, J.; Yimit, H.; Yu, R.; Zhang, X.; Zhao, C.

    2015-03-01

    The Tarim River basin, located in Xinjiang, NW China, is the largest endorheic river basin in China and one of the largest in all of Central Asia. Due to the extremely arid climate, with an annual precipitation of less than 100 mm, the water supply along the Aksu and Tarim rivers solely depends on river water. This is linked to anthropogenic activities (e.g., agriculture) and natural and semi-natural ecosystems as both compete for water. The ongoing increase in water consumption by agriculture and other human activities in this region has been enhancing the competition for water between human needs and nature. Against this background, 11 German and 6 Chinese universities and research institutes have formed the consortium SuMaRiO (Sustainable Management of River Oases along the Tarim River; http://www.sumario.de), which aims to create a holistic picture of the availability of water resources in the Tarim River basin and the impacts on anthropogenic activities and natural ecosystems caused by the water distribution within the Tarim River basin. On the basis of the results from field studies and modeling approaches as well as from suggestions by the relevant regional stakeholders, a decision support tool (DST) will be implemented that will then assist stakeholders in balancing the competition for water, acknowledging the major external effects of water allocation to agriculture and to natural ecosystems. This consortium was formed in 2011 and is funded by the German Federal Ministry of Education and Research. As the data collection phase was finished this year, the paper presented here brings together the results from the fields from the disciplines of climate modeling, cryology, hydrology, agricultural sciences, ecology, geoinformatics, and social sciences in order to present a comprehensive picture of the effects of different water availability schemes on anthropogenic activities and natural ecosystems along the

  19. Rice Rab11 is required for JA-mediated defense signaling

    SciTech Connect

    Hong, Min Ji; Lee, Yun mi; Son, Young Sim; Im, Chak Han; Yi, Young Byung; Rim, Yeong Gil; Bahk, Jeong Dong; Heo, Jae Bok

    2013-05-17

    Highlights: •OsRab11 interacts with OsOPR8. •OsOPR8 is localized in the cytosol and peroxisome. •OsRab11 enhances the NADPH consumption by OsOPR8. •Transgenic Arabidopsis overexpressing OsRab11 represents a pathogen-resistant phenotype. -- Abstract: Rab proteins play an essential role in regulating vesicular transport in eukaryotic cells. Previously, we characterized OsRab11, which in concert with OsGAP1 and OsGDI3 regulates vesicular trafficking from the trans-Golgi network (TGN) to the plasma membrane or vacuole. To further elucidate the physiological function of OsRab11 in plants, we performed yeast two-hybrid screens using OsRab11 as bait. OsOPR8 was isolated and shown to interact with OsRab11. A co-immunoprecipitation assay confirmed this interaction. The green fluorescent protein-OsOPR8 fusion product was targeted to the cytoplasm and peroxisomes of protoplasts from Arabidopsis thaliana. OsOPR8 exhibited NADPH-dependent reduction activity when 2-cyclohexen-1-one (CyHE) and 12-oxo-phytodienoic acid (OPDA) were supplied as possible substrates. Interestingly, NADPH oxidation by OsOPR8 was increased when wild-type OsRab11 or the constitutively active form of OsRab11 (Q78L) were included in the reaction mix, but not when the dominant negative form of OsRab11 (S28N) was included. OsRab11 was expressed broadly in plants and both OsRab11 and OsOPR8 were induced by jasmonic acid (JA) and elicitor treatments. Overexpressed OsRab11 transgenic plants showed resistance to pathogens through induced expression of JA-responsive genes. In conclusion, OsRab11 may be required for JA-mediated defense signaling by activating the reducing activity of OsOPR8.

  20. Nicotine inhibits Fc epsilon RI-induced cysteinyl leukotrienes and cytokine production without affecting mast cell degranulation through alpha 7/alpha 9/alpha 10-nicotinic receptors.

    PubMed

    Mishra, Neerad C; Rir-sima-ah, Jules; Boyd, R Thomas; Singh, Shashi P; Gundavarapu, Sravanthi; Langley, Raymond J; Razani-Boroujerdi, Seddigheh; Sopori, Mohan L

    2010-07-01

    Smokers are less likely to develop some inflammatory and allergic diseases. In Brown-Norway rats, nicotine inhibits several parameters of allergic asthma, including the production of Th2 cytokines and the cysteinyl leukotriene LTC(4). Cysteinyl leukotrienes are primarily produced by mast cells, and these cells play a central role in allergic asthma. Mast cells express a high-affinity receptor for IgE (FcepsilonRI). Following its cross-linking, cells degranulate and release preformed inflammatory mediators (early phase) and synthesize and secrete cytokines/chemokines and leukotrienes (late phase). The mechanism by which nicotine modulates mast cell activation is unclear. Using alpha-bungarotoxin binding and quantitative PCR and PCR product sequencing, we showed that the rat mast/basophil cell line RBL-2H3 expresses nicotinic acetylcholine receptors (nAChRs) alpha7, alpha9, and alpha10; exposure to exceedingly low concentrations of nicotine (nanomolar), but not the biologically inactive metabolite cotinine, for > or = 8 h suppressed the late phase (leukotriene/cytokine production) but not degranulation (histamine and hexosaminidase release). These effects were unrelated to those of nicotine on intracellular free calcium concentration but were causally associated with the inhibition of cytosolic phospholipase A(2) activity and the PI3K/ERK/NF-kappaB pathway, including phosphorylation of Akt and ERK and nuclear translocation of NF-kappaB. The suppressive effect of nicotine on the late-phase response was blocked by the alpha7/alpha9-nAChR antagonists methyllycaconitine and alpha-bungarotoxin, as well as by small interfering RNA knockdown of alpha7-, alpha9-, or alpha10-nAChRs, suggesting a functional interaction between alpha7-, alpha9-, and alpha10-nAChRs that might explain the response of RBL cells to nanomolar concentrations of nicotine. This "hybrid" receptor might serve as a target for novel antiallergic/antiasthmatic therapies.

  1. The GtaR protein negatively regulates transcription of the gtaRI operon and modulates gene transfer agent (RcGTA) expression in Rhodobacter capsulatus

    PubMed Central

    Leung, Molly M.; Brimacombe, Cedric A.; Spiegelman, G. B.; Beatty, J. Thomas

    2013-01-01

    Summary The gtaI gene of Rhodobacter capsulatus encodes an N-acyl-homoserine lactone (acyl-HSL) synthase. Immediately 5′ of the gtaI gene is ORF rcc00328 that encodes a potential acyl-HSL receptor protein. A combination of genetic and biochemical approaches showed that rcc00328 (renamed gtaR) modulates the production of a genetic exchange element called the gene transfer agent (RcGTA), and regulates the transcription of gtaI. Although gtaI mutants exhibited decreased levels of RcGTA production, mutagenesis of gtaR did not, whereas a gtaR/gtaI double mutant produced wild-type levels of RcGTA. Because mutagenesis of gtaR suppressed the effect of the gtaI mutation, we suggest that the GtaR protein is a negative transcriptional regulator of RcGTA gene expression. We discovered that the gtaR and gtaI genes are co-transcribed, and also negatively regulated by the GtaR protein in the absence of acyl-HSL. A His-tagged GtaR protein was purified, and DNA-binding experiments revealed a binding site in the promoter region of the gtaRI operon. This GtaR protein did not bind to the RcGTA promoter region, and therefore modulation of RcGTA production appears to require at least one additional factor. We found that RcGTA production was stimulated by spent media from other species, and identified exogenous acyl-HSLs that induce RcGTA. PMID:22211723

  2. The tomato res mutant which accumulates JA in roots in non-stressed conditions restores cell structure alterations under salinity.

    PubMed

    Garcia-Abellan, José O; Fernandez-Garcia, Nieves; Lopez-Berenguer, Carmen; Egea, Isabel; Flores, Francisco B; Angosto, Trinidad; Capel, Juan; Lozano, Rafael; Pineda, Benito; Moreno, Vicente; Olmos, Enrique; Bolarin, Maria C

    2015-11-01

    Jasmonic acid (JA) regulates a wide spectrum of plant biological processes, from plant development to stress defense responses. The role of JA in plant response to salt stress is scarcely known, and even less known is the specific response in root, the main plant organ responsible for ionic uptake and transport to the shoot. Here we report the characterization of the first tomato (Solanum lycopersicum) mutant, named res (restored cell structure by salinity), that accumulates JA in roots prior to exposure to stress. The res tomato mutant presented remarkable growth inhibition and displayed important morphological alterations and cellular disorganization in roots and leaves under control conditions, while these alterations disappeared when the res mutant plants were grown under salt stress. Reciprocal grafting between res and wild type (WT) (tomato cv. Moneymaker) indicated that the main organ responsible for the development of alterations was the root. The JA-signaling pathway is activated in res roots prior to stress, with transcripts levels being even higher in control condition than in salinity. Future studies on this mutant will provide significant advances in the knowledge of JA role in root in salt-stress tolerance response, as well as in the energy trade-off between plant growth and response to stress.

  3. Novel JAZ co-operativity and unexpected JA dynamics underpin Arabidopsis defence responses to Pseudomonas syringae infection.

    PubMed

    de Torres Zabala, Marta; Zhai, Bing; Jayaraman, Siddharth; Eleftheriadou, Garoufalia; Winsbury, Rebecca; Yang, Ron; Truman, William; Tang, Saijung; Smirnoff, Nicholas; Grant, Murray

    2016-02-01

    Pathogens target phytohormone signalling pathways to promote disease. Plants deploy salicylic acid (SA)-mediated defences against biotrophs. Pathogens antagonize SA immunity by activating jasmonate signalling, for example Pseudomonas syringae pv. tomato DC3000 produces coronatine (COR), a jasmonic acid (JA) mimic. This study found unexpected dynamics between SA, JA and COR and co-operation between JAZ jasmonate repressor proteins during DC3000 infection. We used a systems-based approach involving targeted hormone profiling, high-temporal-resolution micro-array analysis, reverse genetics and mRNA-seq. Unexpectedly, foliar JA did not accumulate until late in the infection process and was higher in leaves challenged with COR-deficient P. syringae or in the more resistant JA receptor mutant coi1. JAZ regulation was complex and COR alone was insufficient to sustainably induce JAZs. JAZs contribute to early basal and subsequent secondary plant defence responses. We showed that JAZ5 and JAZ10 specifically co-operate to restrict COR cytotoxicity and pathogen growth through a complex transcriptional reprogramming that does not involve the basic helix-loop-helix transcription factors MYC2 and related MYC3 and MYC4 previously shown to restrict pathogen growth. mRNA-seq predicts compromised SA signalling in a jaz5/10 mutant and rapid suppression of JA-related components on bacterial infection. PMID:26428397

  4. L-Tryptophan catabolism by Rubrivivax benzoatilyticus JA2 occurs through indole 3-pyruvic acid pathway.

    PubMed

    Kumavath, Ranjith N; Ramana, Ch V; Sasikala, Ch

    2010-09-01

    Rubrivivax benzoatilyticus JA2 utilizes L: -tryptophan as the sole source of nitrogen for growth, and it has a doubling time of approximately 11 h (compared to 8 h with ammonium chloride). With cell free extracts in the presence of 2-oxoglutarate, indole-3-pyruvic acid, indole-3-acetaldehyde, indole-3-acetic acid, isatin, benzaldehyde, gallic acid and pyrogallol were identified using high performance liquid chromatography (HPLC) and liquid chromatography-mass spectroscopy (LC-MS) analysis. The conversion of L: -tryptophan into indole 3-pyruvic acid and glutamate by an enzyme aminotransferase was confirmed and the catabolism of indole-3-pyruvic acid via side chain oxidation followed by ring oxidation, gallic acid and pyrogallol were confirmed as metabolites. In addition, the proposed pathway sequential conversion of indole-3-pyruvic acid to the end product of pyrogallol was identified, including an enzymatic step that would convert isatin to benzaldehyde by an enzyme yet to be identified. At this stage of the study, the enzyme tryptophan aminotransferase in R. benzoatilyticus JA2 was demonstrated.

  5. Early dust formation and a massive progenitor for SN 2011ja?

    NASA Astrophysics Data System (ADS)

    Andrews, J. E.; Krafton, Kelsie M.; Clayton, Geoffrey C.; Montiel, E.; Wesson, R.; Sugerman, Ben E. K.; Barlow, M. J.; Matsuura, M.; Drass, H.

    2016-04-01

    SN 2011ja was a bright (I = -18.3) Type II supernova occurring in the nearby edge on spiral galaxy NGC 4945. Flat-topped and multipeaked H α and H β spectral emission lines appear between 64 and 84 d post-explosion, indicating interaction with a disc-like circumstellar medium inclined ˜45° from edge-on. After day 84, an increase in the H- and K-band flux along with heavy attenuation of the red wing of the emission lines are strong indications of early dust formation, likely located in the cool dense shell created between the forward shock of the SN ejecta and the reverse shock created as the ejecta plows into the existing circumstellar material. Radiative transfer modelling reveals both ≈1 × 10-5 M⊙ of pre-existing dust located ˜1016.7 cm away and up to ≈6 × 10-4 M⊙ of newly formed dust. Spectral observations after 1.5 yr reveal the possibility that the fading SN is located within a young (3-6 Myr) massive stellar cluster, which when combined with tentative 56Ni mass estimates of 0.2 M⊙ may indicate a massive (≥25 M⊙) progenitor for SN 2011ja.

  6. Draft genome sequence of Rhodomicrobium udaipurense JA643T with special reference to hopanoid biosynthesis.

    PubMed

    Tushar, L; Sasikala, Ch; Ramana, Ch V

    2014-12-01

    Hopanoids are present in vast amounts as integral components of bacteria and plants with their primary function to strengthen rigidity of the plasma membrane. To establish their roles more precisely, we conducted sequencing of the whole genome of Rhodomicrobium udaipurense JA643(T) isolated from a fresh water stream of Udaipur in Himachal Pradesh, India, by using the Illumina HiSeq pair end chemistry of 2 × 100 bp platform. Determined genome showed a high degree of similarity to the genome of R. vannielii ATCC17100(T) and the 13.7 million reads generated a sequence of 3,649,277 bp possessing 3,611 putative genes. The genomic data were subsequently investigated with respect to genes involved in various features. The machinery required for the degradation of aromatic compounds and resistance to solvents as well as all that required for photosynthesis are present in this organism. Also, through extensive functional annotation, 18 genes involved in the biosynthesis of hopanoids are predicted, namely those responsible for the synthesis of diploptene, diplopterol, adenosylhopane, ribosylhopane, aminobacteriohopanetriol, glycosyl group containing hopanoids and unsaturated hopanoids. The hopanoid biosynthetic pathway was then inferred based on the genes identified and through experimental validation of individual hopanoid molecules. The genome data of R. udaipurense JA643(T) will be useful in understanding the functional features of hopanoids in this bacterium.

  7. Transcriptome sequencing and de novo analysis of cytoplasmic male sterility and maintenance in JA-CMS cotton.

    PubMed

    Yang, Peng; Han, Jinfeng; Huang, Jinling

    2014-01-01

    Cytoplasmic male sterility (CMS) is the failure to produce functional pollen, which is inherited maternally. And it is known that anther development is modulated through complicated interactions between nuclear and mitochondrial genes in sporophytic and gametophytic tissues. However, an unbiased transcriptome sequencing analysis of CMS in cotton is currently lacking in the literature. This study compared differentially expressed (DE) genes of floral buds at the sporogenous cells stage (SS) and microsporocyte stage (MS) (the two most important stages for pollen abortion in JA-CMS) between JA-CMS and its fertile maintainer line JB cotton plants, using the Illumina HiSeq 2000 sequencing platform. A total of 709 (1.8%) DE genes including 293 up-regulated and 416 down-regulated genes were identified in JA-CMS line comparing with its maintainer line at the SS stage, and 644 (1.6%) DE genes with 263 up-regulated and 381 down-regulated genes were detected at the MS stage. By comparing the two stages in the same material, there were 8 up-regulated and 9 down-regulated DE genes in JA-CMS line and 29 up-regulated and 9 down-regulated DE genes in JB maintainer line at the MS stage. Quantitative RT-PCR was used to validate 7 randomly selected DE genes. Bioinformatics analysis revealed that genes involved in reduction-oxidation reactions and alpha-linolenic acid metabolism were down-regulated, while genes pertaining to photosynthesis and flavonoid biosynthesis were up-regulated in JA-CMS floral buds compared with their JB counterparts at the SS and/or MS stages. All these four biological processes play important roles in reactive oxygen species (ROS) homeostasis, which may be an important factor contributing to the sterile trait of JA-CMS. Further experiments are warranted to elucidate molecular mechanisms of these genes that lead to CMS.

  8. EURAMET.RI(I)-S7 comparison of alanine dosimetry systems for absorbed dose to water measurements in gamma- and x-radiation at radiotherapy levels

    NASA Astrophysics Data System (ADS)

    Garcia, Tristan; Anton, Mathias; Sharpe, Peter

    2012-01-01

    The National Physical Laboratory (NPL), the Physikalisch-Technische Bundesanstalt (PTB) and the Laboratoire National Henri Becquerel (LNE-LNHB) are involved in the European project 'External Beam Cancer Therapy', a project of the European Metrology Research Programme. Within this project, the electron paramagnetic resonance (EPR)/alanine dosimetric method has been chosen for performing measurements in small fields such as those used in IMRT (intensity modulated radiation therapy). In this context, these three National Metrology Institutes (NMI) wished to compare the result of their alanine dosimetric systems (detector, modus operandi etc) at radiotherapy dose levels to check their consistency. This EURAMET.RI(I)-S7 comparison has been performed with the support of the Bureau International des Poids et Mesures (BIPM) which collected and distributed the results as a neutral organization, to ensure the comparison was 'blind'. Irradiations have been made under reference conditions by each laboratory in a 60Co beam and in an accelerator beam (10 MV or 12 MV) in a water phantom of 30 cm × 30 cm × 30 cm in a square field of 10 cm × 10 cm at the reference depth. Irradiations have been performed at known values of absorbed dose to water (Dw) within 10% of nominal doses of 5 Gy and 10 Gy, i.e. between 4.5 Gy and 5.5 Gy and between 9 Gy and 11 Gy, respectively. Each participant read out their dosimeters and assessed the doses using their own protocol (calibration curve, positioning device etc) as this comparison aims at comparing the complete dosimetric process. The results demonstrate the effectiveness of the EPR/alanine dosimetry systems operated by National Metrology Institutes as a method of assuring therapy level doses with the accuracy required. The maximum deviation in the ratio of measured to applied dose is less than 1%. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key

  9. Identification of an EcoRI restriction site for a rapid and precise determination of beta-asarone-free Acorus calamus cytotypes.

    PubMed

    Bertea, Cinzia M; Azzolin, Chiara M M; Bossi, Simone; Doglia, Giovanni; Maffei, Massimo E

    2005-03-01

    Calamus (Acorus calamus L., Araceae) is an aromatic herb, indigenous to Central Asia and Eastern Europe. The fragrant oils obtained by alcoholic extraction of the rhizome are mainly used in the pharmaceutical and oenological industries. Nevertheless, the occurrence of beta-asarone [(Z)-1,2,4-trimethoxy-5-prop-1-enyl-benzene] limits the possibility of its use due to the carcinogenic properties of this compound. The aim of this work was to identify a diploid beta-asarone-free A. calamus by using chemical and molecular approaches. For these purposes alcoholic extracts of both diploid and triploid A. calamus were analyzed by gas chromatography-mass spectrometry (GC-MS) and comparison of the 700 bp sequence of the non-transcribed spacer (NTS) in the 5S-rRNA gene was also performed. Alcoholic extracts of the triploid A. calamus were characterized by a higher percentage of beta-asarone (11%), which was the main compound, followed by higher percentages of camphene (2.27%), E-beta-ocimene (3.28%), camphor (1.54%), calarene (1.42%), alpha-selinene (5.02%) and tau-cadinol (2.00%), when compared to the diploid A. calamus. The latter had higher percentages of iso-shyobunone (8.62%), beta-sesquiphellandrene (3.28%), preiso calamendiol (22.81%) and acorone (26.33%), and completely lacked of beta-asarone. The 5S-rRNA spacer region of both diploid and triploid A. calamus were amplified by PCR using a pair of primers located at the 3' and 5' ends of the coding sequence of 5S-rRNA gene. The resulting PCR products (about 700 bp) were gel purified, subcloned into pGEM-T Easy vector and sequenced. By aligning the isolated nucleotide sequences of the two varieties and the sequences from different A. calamus chemotypes present in Genbank, sequence diversities were found in the spacer region. Furthermore, the PCR products were digested by using EcoRI. The restriction profile of the spacer domain resulted different for the two cytotypes. Along with chemical analysis of alcoholic extracts

  10. The transcription factor MAZR preferentially acts as a transcriptional repressor in mast cells and plays a minor role in the regulation of effector functions in response to FcεRI stimulation.

    PubMed

    Abramova, Anastasia; Sakaguchi, Shinya; Schebesta, Alexandra; Hassan, Hammad; Boucheron, Nicole; Valent, Peter; Roers, Axel; Ellmeier, Wilfried

    2013-01-01

    Mast cells are key players in type I hypersensitivity reactions in humans and mice and their activity has to be tightly controlled. Previous studies implicated the transcription factor MAZR in the regulation of mast cell function. To study the role of MAZR in mast cells, we generated a conditional Mazr allele and crossed Mazr (F/F) mice with the Vav-iCre deleter strain, which is active in all hematopoietic cells. MAZR-null BM-derived mast cells (BMMC) were phenotypically indistinguishable from wild-type BMMCs, although the numbers of IL-3 generated Mazr (F/F) Vav-iCre BMMCs were reduced in comparison to Mazr (F/F) BMMCs, showing that MAZR is required for the efficient generation of BMMC in vitro. A gene expression analysis revealed that MAZR-deficiency resulted in the dysregulation of 128 genes, with more genes up- than down-regulated in the absence of MAZR, indicating that MAZR acts as a transcriptional repressor in mast cells. Among the up-regulated genes were the chemokines Ccl5, Cxcl10, Cxcl12, the chemokine receptor Ccr5 and the cytokine IL18, suggesting an immunoregulatory role for MAZR in mast cells. Enforced expression of MAZR in mature Mazr-deficient BMMCs rescued the altered expression pattern of some genes tested, suggesting direct regulation of these genes by MAZR. Upon FcεRI stimulation, Mazr expression was transiently down-regulated in BMMCs. However, early and late effector functions in response to FcεRI-mediated stimulation were not impaired in the absence of MAZR, with the exception of IL-6, which was slightly decreased. Taken together, out data indicate that MAZR preferentially acts as a transcriptional repressor in mast cells, however MAZR plays only a minor role in the transcriptional networks that regulate early and late effector functions in mast cells in response to FcεRI stimulation.

  11. Safety and Immunogenicity of EBA-175 RII-NG Malaria Vaccine Administered Intramuscularly in Semi-Immune Adults: A Phase 1, Double-Blinded Placebo Controlled Dosage Escalation Study

    PubMed Central

    Koram, Kwadwo A.; Ocran, Josephine; Karikari, Yaa S.; Adu-Amankwah, Susan; Ntiri, Michael; Abuaku, Benjamin; Dodoo, Daniel; Gyan, Ben; Kronmann, Karl C.; Nkrumah, Francis

    2016-01-01

    The erythrocyte binding antigen region II (EBA-175 RII) is a Plasmodium falciparum ligand that mediates erythrocyte invasion and is considered an important malaria vaccine candidate. A phase Ia trial in malaria naïve adults living in the United States found the recombinant non-glycosylated vaccine antigen, EBA-175 RII-NG adjuvanted with aluminium phosphate to be safe, immunogenic and capable of inducing biologically active antibodies that can inhibit parasite growth in vitro. The aim of the current study was to assess the safety and immunogenicity of this vaccine in malaria exposed semi-immune healthy adults living in a malaria endemic country, Ghana. In this double-blinded, placebo controlled, dose escalation phase I trial, eighteen subjects per group received ascending dose concentrations (5 μg, 20 μg or 80 μg) of the vaccine intramuscularly at 0, 1 and 6 months, while 6 subjects received placebo (normal saline). The primary end point was the number of subjects experiencing Grade 3 systemic or local adverse events within 14 days post-vaccination. Serious adverse events were assessed throughout the study period. Blood samples for immunological analyses were collected at days 0, 14, 28, 42, 180 and 194. A total of 52 subjects received three doses of the vaccine in the respective groups. No serious adverse events were reported. The majority of all adverse events reported were mild to moderate in severity, with local pain and tenderness being the most common. All adverse events, irrespective of severity, resolved without any sequelae. Subjects who received any of the EBA-175 RII-NG doses had high immunoglobulin G levels which moderately inhibited P. falciparum growth in vitro, compared to those in the placebo group. In conclusion, the EBA-175 RII-NG vaccine was safe, well tolerated and immunogenic in malaria semi-immune Ghanaian adults. Its further development is recommended. Trial registration ClinicalTrials.gov. Identifier: NCT01026246 PMID:27644034

  12. Activation of protein tyrosine kinase p72syk by Fc epsilon RI aggregation in rat basophilic leukemia cells. p72syk is a minor component but the major protein tyrosine kinase of pp72.

    PubMed

    Minoguchi, K; Benhamou, M; Swaim, W D; Kawakami, Y; Kawakami, T; Siraganian, R P

    1994-06-17

    Aggregation of the high affinity IgE receptors (Fc epsilon RI) on rat basophilic leukemia RBL-2H3 cells results in protein tyrosine phosphorylations. Previously we reported that there is prominent tyrosine phosphorylation of approximately 72-kDa proteins (pp72) and that the tyrosine kinase p72syk is one component of pp72. Here we studied further the relationship of p72syk to pp72. The aggregation of Fc epsilon RI induced the activation of p72syk which was parallel to its tyrosine phosphorylation. By in vitro kinase assay of immune complexes purified with anti-phosphotyrosine antibodies, p72syk was the major pp72 tyrosine kinase. However, by immunoblotting with anti-phosphotyrosine antibodies, p72syk was a minor component of pp72. The heterogeneous nature of pp72 was indicated by different studies. Under optimum conditions of one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis, pp72 consisted of a heterogeneous group of 69-, 71-, and 72-kDa tyrosine-phosphorylated proteins. There were differences in the tyrosine phosphorylation of these proteins in cells activated in the absence of extracellular calcium or when stimulation was with the calcium ionophore A23187 or with phorbol myristate acetate. One of the proteins migrating at 69 kDa was p72syk. By two-dimensional gel electrophoresis pp72 was found to consist of multiple tyrosine-phosphorylated protens including 71-80-kDa proteins that associate with p53/56lyn. A 75-kDa tyrosine-phosphorylated protein, different from pp72, was identified as p75HS1 (SPY75). These results demonstrate the heterogeneous nature of the pp72 and that p72syk is activated after Fc epsilon RI aggregation. PMID:7515887

  13. Banana fruit VQ motif-containing protein5 represses cold-responsive transcription factor MaWRKY26 involved in the regulation of JA biosynthetic genes

    PubMed Central

    Ye, Yu-Jie; Xiao, Yun-Yi; Han, Yan-Chao; Shan, Wei; Fan, Zhong-Qi; Xu, Qun-Gang; Kuang, Jian-Fei; Lu, Wang-Jin; Lakshmanan, Prakash; Chen, Jian-Ye

    2016-01-01

    Most harvested fruits and vegetables are stored at low temperature but many of them are highly sensitive to chilling injury. Jasmonic acid (JA), a plant hormone associated with various stress responses, is known to reduce chilling injury in fruits. However, little is known about the transcriptional regulation of JA biosynthesis in relation to cold response of fruits. Here, we show the involvement of a Group I WRKY transcription factor (TF) from banana fruit, MaWRKY26, in regulating JA biosynthesis. MaWRKY26 was found to be nuclear-localized with transcriptional activation property. MaWRKY26 was induced by cold stress or by methyl jasmonate (MeJA), which enhances cold tolerance in banana fruit. More importantly, MaWRKY26 transactivated JA biosynthetic genes MaLOX2, MaAOS3 and MaOPR3 via binding to their promoters. Further, MaWRKY26 physically interacted with a VQ motif-containing protein MaVQ5, and the interaction attenuated MaWRKY26-induced transactivation of JA biosynthetic genes. These results strongly suggest that MaVQ5 might act as a repressor of MaWRKY26 in activating JA biosynthesis. Taken together, our findings provide new insights into the transcriptional regulation of JA biosynthesis in response to cold stress and a better understanding of the molecular aspects of chilling injury in banana fruit. PMID:27004441

  14. Polymorphisms XbaI (rs693) and EcoRI (rs1042031) of the ApoB gene are associated with carotid plaques but not with carotid intima-media thickness in patients with diabetes mellitus type 2.

    PubMed

    Nikolajevic Starcevic, Jovana; Santl Letonja, Marija; Praznikar, Zala J; Makuc, Jana; Vujkovac, Andreja C; Petrovic, Daniel

    2014-05-01

    Hintergrund: Apolipoprotein B ist eine wichtige strukturelle Komponente der atherogenetischen Lipoproteine (LDL, VLDL und IDL). Genetische Variationen des ApoB-Gens können verschiedene Effekte auf Plasmakonzentrationen des ApoB und auf den Lipidspiegel haben, was dann die Atherogenese beeinflusst. Primäres Ziel der Studie war die Analyse der Assoziation der Polymorphismen XbaI (rs693) und EcoRI (rs1042031) mit Plasmakonzentrationen von ApoB, dem Lipidspiegel und verschiedenen atherosklerotischen Phänotypen bei Patienten mit Diabetes mellitus Typ 2. Patienten und Methoden: 595 Patienten mit Diabetes mellitus Typ 2 (399 mit Statin-Therapie und 196 Patienten ohne Statin-Therapie) und 200 Personen ohne Diabetes mellitus Typ 2 (Kontrollgruppe). Die Intima-Media-Dicke (IMD) der A. carotis und die Charakteristika der atherosklerotischen Plaques wurden mit Ultraschall analysiert. Biochemische Untersuchungen wurden mit standardmäßigen biochemischen Methoden durchgeführt. Die XbaI (rs693) und EcoRI (rs1042031) Genotypen wurden mittels Real-Time PCR analysiert. Ergebnisse: Die Genotyp-Verteilung und die allelische Häufigkeit von XbaI und EcoRI Polymorphismen unterschieden sich nicht zwischen Patienten mit und ohne Diabetes mellitus. Es wurden keine signifikanten Unterschiede der Plasmakonzentrationen von ApoA1, ApoB, Cholesterinspiegel, hs-CRP, Fibrinogen und der IMD bei Patienten mit Diabetes mellitus Typ 2 mit verschiedenen Genotypen festgestellt, auch unter Berücksichtigung der Statintherapie. Das Risiko der Atherosklerose der Karotiden wird bei Patienten mit X + X + Genotyp im Vergleich zu Patienten ohne diesen Genotyp (OR = 1.74, p = 0.03)höher und bei Diabetiker mit E-Allelen (OR = 0.48, p = 0.02) niedriger. Es gab keine Assoziation zwischen XbaI / EcoRI Polymorphismen und IMD oder instabilen atherosklerotischen Plaques bei Patienten mit Diabetes mellitus Typ 2. Schlussfolgerungen: Das Risiko der Atherosklerose der Karotiden wird höher bei Patienten mit

  15. HiJaK: the high-resolution J, H and K spectrometer

    NASA Astrophysics Data System (ADS)

    Muirhead, Philip S.; Hall, Zachary J.; Veyette, Mark J.

    2014-08-01

    We present the science drivers, design requirements and a preliminary design for a high-resolution, broad- bandwidth, slit-fed cross-dispersed near-infrared spectrometer for 5-meter-class telescopes. Our concept, called the High-Resolution J, H and K Spectrometer, or HiJaK, utilizes an R6 echelle in a white-pupil design to achieve high resolution in a compact configuration with a 2048 x 2048 pixel infrared detector. We present a preliminary ray-traced optical design matched to the new 4.3-meter Discovery Channel Telescope in Happy Jack, Arizona. We also discuss mechanical and cryogenic options to house our optical design.

  16. bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.

    PubMed

    Fonseca, Sandra; Fernández-Calvo, Patricia; Fernández, Guillermo M; Díez-Díaz, Monica; Gimenez-Ibanez, Selena; López-Vidriero, Irene; Godoy, Marta; Fernández-Barbero, Gemma; Van Leene, Jelle; De Jaeger, Geert; Franco-Zorrilla, José Manuel; Solano, Roberto

    2014-01-01

    Cell reprogramming in response to jasmonates requires a tight control of transcription that is achieved by the activity of JA-related transcription factors (TFs). Among them, MYC2, MYC3 and MYC4 have been described as activators of JA responses. Here we characterized the function of bHLH003, bHLH013 and bHLH017 that conform a phylogenetic clade closely related to MYC2, MYC3 and MYC4. We found that these bHLHs form homo- and heterodimers and also interact with JAZ repressors in vitro and in vivo. Phenotypic analysis of JA-regulated processes, including root and rosette growth, anthocyanin accumulation, chlorophyll loss and resistance to Pseudomonas syringae, on mutants and overexpression lines, suggested that these bHLHs are repressors of JA responses. bHLH003, bHLH013 and bHLH017 are mainly nuclear proteins and bind DNA with similar specificity to that of MYC2, MYC3 and MYC4, but lack a conserved activation domain, suggesting that repression is achieved by competition for the same cis-regulatory elements. Moreover, expression of bHLH017 is induced by JA and depends on MYC2, suggesting a negative feed-back regulation of the activity of positive JA-related TFs. Our results suggest that the competition between positive and negative TFs determines the output of JA-dependent transcriptional activation. PMID:24465948

  17. bHLH003, bHLH013 and bHLH017 Are New Targets of JAZ Repressors Negatively Regulating JA Responses

    PubMed Central

    Fonseca, Sandra; Fernández-Calvo, Patricia; Fernández, Guillermo M.; Díez-Díaz, Monica; Gimenez-Ibanez, Selena; López-Vidriero, Irene; Godoy, Marta; Fernández-Barbero, Gemma; Van Leene, Jelle; De Jaeger, Geert; Franco-Zorrilla, José Manuel; Solano, Roberto

    2014-01-01

    Cell reprogramming in response to jasmonates requires a tight control of transcription that is achieved by the activity of JA-related transcription factors (TFs). Among them, MYC2, MYC3 and MYC4 have been described as activators of JA responses. Here we characterized the function of bHLH003, bHLH013 and bHLH017 that conform a phylogenetic clade closely related to MYC2, MYC3 and MYC4. We found that these bHLHs form homo- and heterodimers and also interact with JAZ repressors in vitro and in vivo. Phenotypic analysis of JA-regulated processes, including root and rosette growth, anthocyanin accumulation, chlorophyll loss and resistance to Pseudomonas syringae, on mutants and overexpression lines, suggested that these bHLHs are repressors of JA responses. bHLH003, bHLH013 and bHLH017 are mainly nuclear proteins and bind DNA with similar specificity to that of MYC2, MYC3 and MYC4, but lack a conserved activation domain, suggesting that repression is achieved by competition for the same cis-regulatory elements. Moreover, expression of bHLH017 is induced by JA and depends on MYC2, suggesting a negative feed-back regulation of the activity of positive JA-related TFs. Our results suggest that the competition between positive and negative TFs determines the output of JA-dependent transcriptional activation. PMID:24465948

  18. JA, a new type of polyunsaturated fatty acid isolated from Juglans mandshurica Maxim, limits the survival and induces apoptosis of heptocarcinoma cells.

    PubMed

    Gao, Xiu-Li; Lin, Hua; Zhao, Wei; Hou, Ya-Qin; Bao, Yong-Li; Song, Zhen-Bo; Sun, Lu-Guo; Tian, Shang-Yi; Liu, Biao; Li, Yu-Xin

    2016-03-01

    Juglans mandshurica Maxim (Juglandaceae) is a famous folk medicine for cancer treatment and some natural compounds isolated from it have been studied extensively. Previously we isolated a type of ω-9 polyunsaturated fatty acid (JA) from the bark of J. mandshurica, however little is known about its activity and the underlying mechanisms. In this study, we studied anti-tumor activity of JA on several human cancer cell lines. Results showed that JA is cytotoxic to HepG2, MDA-MB-231, SGC-7901, A549 and Huh7 cells at a concentration exerting minimal toxic effects on L02 cells. The selective toxicity of JA was better than other classical anti-cancer drugs. Further investigation indicated that JA could induce cell apoptosis, characterized by chromatin condensation, DNA fragmentation and activation of the apoptosis-associated proteins such as Caspase-3 and PARP-1. Moreover, we investigated the cellular apoptosis pathway involved in the apoptosis process in HepG2 cells. We found that proteins involved in mitochondrion (cleaved-Caspase-9, Apaf-1, HtrA2/Omi, Bax, and Mitochondrial Bax) and endocytoplasmic reticulum (XBP-1s, GRP78, cleaved-Caspase-7 and cleaved-Caspase-12) apoptotic pathways were up-regulated when cells were treated by JA. In addition, a morphological change in the mitochondrion was detected. Furthermore, we found that JA could inhibit DNA synthesis and induce G2/M cell cycle arrest. The expression of G2-to-M transition related proteins, such as CyclinB1 and phosphorylated-CDK1, were reduced. In contrast, the G2-to-M inhibitor p21 was increased in JA-treated cells. Overall, our results suggest that JA can induce mitochondrion- and endocytoplasmic reticulum-mediated apoptosis, and G2/M phase arrest in HepG2 cells, making it a promising therapeutic agent against hepatoma.

  19. Seed germination ecology of feather lovegrass [Eragrostis tenella (L.) Beauv. Ex Roemer & J.A. Schultes].

    PubMed

    Chauhan, Bhagirath S

    2013-01-01

    Feather lovegrass [Eragrostis tenella (L.) Beauv. Ex Roemer & J.A. Schultes] is a C4 grass weed that has the ability to grow in both lowland and upland conditions. Experiments were conducted in the laboratory and screenhouse to evaluate the effect of environmental factors on germination, emergence, and growth of this weed species. Germination in the light/dark regime was higher at alternating day/night temperatures of 30/20 °C (98%) than at 35/25 °C (83%) or 25/15 °C (62%). Germination was completely inhibited by darkness. The osmotic potential and sodium chloride concentrations required for 50% inhibition of maximum germination were -0.7 MPa and 76 mM, respectively. The highest seedling emergence (69%) was observed from the seeds sown on the soil surface and no seedlings emerged from seeds buried at depths of 0.5 cm or more. The use of residue as mulches significantly reduced the emergence and biomass of feather lovegrass seedlings. A residue amount of 0.5 t ha(-1) was needed to suppress 50% of the maximum seedlings. Because germination was strongly stimulated by light and seedling emergence was the highest for the seeds sown on the soil surface, feather lovegrass is likely to become a problematic weed in zero-till systems. The knowledge gained from this study could help in developing effective and sustainable weed management strategies.

  20. SA-inducible Arabidopsis glutaredoxin interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription.

    PubMed

    Ndamukong, Ivan; Abdallat, Ayed Al; Thurow, Corinna; Fode, Benjamin; Zander, Mark; Weigel, Ralf; Gatz, Christiane

    2007-04-01

    Salicylic acid (SA) is a plant signaling molecule that mediates the induction of defense responses upon attack by a variety of pathogens. Moreover, it antagonizes gene induction by the stress signaling molecule jasmonic acid (JA). Several SA-responsive genes are regulated by basic/leucine zipper-type transcription factors of the TGA family. TGA factors interact with NPR1, a central regulator of many SA-induced defense responses including SA/JA antagonism. In order to identify further regulatory proteins of SA-dependent signaling pathways, a yeast protein interaction screen with tobacco TGA2.2 as bait and an Arabidopsis thaliana cDNA prey library was performed and led to the identification of a member of the glutaredoxin family (GRX480, encoded by At1g28480). Glutaredoxins are candidates for mediating redox regulation of proteins because of their capacity to catalyze disulfide transitions. This agrees with previous findings that the redox state of both TGA1 and NPR1 changes under inducing conditions. Transgenic Arabidopsis plants ectopically expressing GRX480 show near wild-type expression of standard marker genes for SA- and xenobiotic-inducible responses. In contrast, transcription of the JA-dependent defensin gene PDF1.2 was antagonized by transgenic GRX480. This, together with the observation that GRX480 transcription is SA-inducible and requires NPR1, suggests a role of GRX480 in SA/JA cross-talk. Suppression of PDF1.2 by GRX480 depends on the presence of TGA factors, indicating that the GRX480/TGA interaction is effective in planta.

  1. Elevated CO2 Reduces the Resistance and Tolerance of Tomato Plants to Helicoverpa armigera by Suppressing the JA Signaling Pathway

    PubMed Central

    Ren, Qin; Zhu-Salzman, Keyan; Kang, Le; Wang, Chenzhu; Li, Chuanyou; Ge, Feng

    2012-01-01

    Both resistance and tolerance, which are two strategies that plants use to limit biotic stress, are affected by the abiotic environment including atmospheric CO2 levels. We tested the hypothesis that elevated CO2 would reduce resistance (i.e., the ability to prevent damage) but enhance tolerance (i.e., the ability to regrow and compensate for damage after the damage has occurred) of tomato plants to the cotton bollworm, Helicoverpa armigera. The results showed that elevated CO2 reduced resistance by decreasing the jasmonic acid (JA) level and activities of lipoxygenase, proteinase inhibitors, and polyphenol oxidase in wild-type (WT) plants infested with H. armigera. Consequently, the activities of total protease, trypsin-like enzymes, and weak and active alkaline trypsin-like enzymes increased in the midgut of H. armigera when fed on WT plants grown under elevated CO2. Unexpectedly, the tolerance of the WT to H. armigera (in terms of photosynthetic rate, activity of sucrose phosphate synthases, flower number, and plant biomass and height) was also reduced by elevated CO2. Under ambient CO2, the expression of resistance and tolerance to H. armigera was much greater in wild type than in spr2 (a JA-deficient genotype) plants, but elevated CO2 reduced these differences of the resistance and tolerance between WT and spr2 plants. The results suggest that the JA signaling pathway contributes to both plant resistance and tolerance to herbivorous insects and that by suppressing the JA signaling pathway, elevated CO2 will simultaneously reduce the resistance and tolerance of tomato plants. PMID:22829948

  2. Fc epsilon RI-mediated association of 6-micron beads with RBL-2H3 mast cells results in exclusion of signaling proteins from the forming phagosome and abrogation of normal downstream signaling

    PubMed Central

    1996-01-01

    Cells of the mucosal mast cell line, RBL-2H3, are normally stimulated to degranulate after aggregation of high affinity receptors for IgE (Fc epsilon RI) by soluble cross-linking ligands. This cellular degranulation process requires sustained elevation of cytoplasmic Ca2+. In this study, we investigated the response of RBL-2H3 cells to 6- micron beads coated with IgE-specific ligands. These ligand-coated beads cause only small, transient Ca2+ responses, even though the same ligands added in soluble form cause larger, more sustained Ca2+ responses. The ligand-coated 6-micron beads also fail to stimulate significant degranulation of RBL-2H3 cells, whereas much larger ligand- coated Sepharose beads stimulate ample degranulation. Confocal fluorescence microscopy shows that the 6-micron beads (but not the Sepharose beads) are phagocytosed by RBL-2H3 cells and that, beginning with the initial stages of bead engulfment, there is exclusion of many plasma membrane components from the 6-micron bead/cell interface, including p53/56lyn and several other markers for detergent-resistant membrane domains, as well as an integrin and unliganded IgE-Fc epsilon RI. The fluorescent lipid probe DiIC16 is a marker for the membrane domains that is excluded from the cell/bead interface, whereas a structural analogue, fast DiI, which differs from DiIC16 by the presence of unsaturated acyl chains, is not substantially excluded from the interface. None of these components are excluded from the interface of RBL-2H3 cells and the large Sepharose beads. Additional confocal microscopy analysis indicates that microfilaments are involved in the exclusion of plasma membrane components from the cell/bead interface. These results suggest that initiation of phagocytosis diverts normal signaling pathways in a cytoskeleton-driven membrane clearance process that alters the physiological response of the cells. PMID:8830772

  3. Expression of TGF-beta1, TGF-beta2, TGF-beta3 and the receptors TGF-betaRI and TGF-betaRII in placentomes of artificially inseminated and nuclear transfer derived bovine pregnancies.

    PubMed

    Ravelich, S R; Shelling, A N; Wells, D N; Peterson, A J; Lee, R S F; Ramachandran, A; Keelan, J A

    2006-01-01

    Bovine nuclear transfer pregnancies are characterized by a high incidence of placental abnormalities, notably, increased placentome size and deficiencies in trophoblast cell function and establishment of placental vasculature. Alterations in gene expression during placental growth and development may contribute to the appearance of large placentomes in pregnancies derived from nuclear transfer. The placenta synthesizes a number of cytokines and growth factors, including the transforming growth factor-betas (TGF-betas) that are involved in the establishment, maintenance and/or regulation of pregnancy. All forms of TGF-beta and their receptors are present at the fetal-maternal interface of the bovine placentome, where they are thought to play an important role in regulating growth, differentiation, and function of the placenta. Using real-time RT-PCR, we have examined the expression of TGF-beta1, TGF-beta2, TGF-beta3 and the receptors TGF-betaRI and TGF-betaRII in placentomes of artificially inseminated (AI) and nuclear transfer (NT)-derived bovine pregnancies at days 50, 100 and 150 of gestation. TGF-beta1, TGF-beta2 and TGF-beta3 mRNA expression increased by 2.0-2.8-fold, while TGF-betaRI and TGF-betaRII mRNA expression decreased by 1.7-2.0-fold in NT placentomes compared to AI controls at all gestational ages examined. These findings indicate that NT placentomes may be resistant to the growth suppressive effects of TGF-betas and could contribute to the placental proliferative abnormalities observed in NT-derived placentas. Alternatively, deficiencies in placentation may provide a mechanism whereby TGF-betas are dysregulated in NT pregnancies.

  4. A bHLH-Type Transcription Factor, ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR/JA-ASSOCIATED MYC2-LIKE1, Acts as a Repressor to Negatively Regulate Jasmonate Signaling in Arabidopsis[C][W

    PubMed Central

    Nakata, Masaru; Mitsuda, Nobutaka; Herde, Marco; Koo, Abraham J.K.; Moreno, Javier E.; Suzuki, Kaoru; Howe, Gregg A.; Ohme-Takagi, Masaru

    2013-01-01

    Jasmonates (JAs) are plant hormones that regulate the balance between plant growth and responses to biotic and abiotic stresses. Although recent studies have uncovered the mechanisms for JA-induced responses in Arabidopsis thaliana, the mechanisms by which plants attenuate the JA-induced responses remain elusive. Here, we report that a basic helix-loop-helix–type transcription factor, ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR/JA-ASSOCIATED MYC2-LIKE1 (JAM1), acts as a transcriptional repressor and negatively regulates JA signaling. Gain-of-function transgenic plants expressing the chimeric repressor for JAM1 exhibited substantial reduction of JA responses, including JA-induced inhibition of root growth, accumulation of anthocyanin, and male fertility. These plants were also compromised in resistance to attack by the insect herbivore Spodoptera exigua. Conversely, jam1 loss-of-function mutants showed enhanced JA responsiveness, including increased resistance to insect attack. JAM1 and MYC2 competitively bind to the target sequence of MYC2, which likely provides the mechanism for negative regulation of JA signaling and suppression of MYC2 functions by JAM1. These results indicate that JAM1 negatively regulates JA signaling, thereby playing a pivotal role in fine-tuning of JA-mediated stress responses and plant growth. PMID:23673982

  5. Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes.

    PubMed

    Plett, Jonathan M; Daguerre, Yohann; Wittulsky, Sebastian; Vayssières, Alice; Deveau, Aurelie; Melton, Sarah J; Kohler, Annegret; Morrell-Falvey, Jennifer L; Brun, Annick; Veneault-Fourrey, Claire; Martin, Francis

    2014-06-01

    Ectomycorrhizal fungi, such as Laccaria bicolor, support forest growth and sustainability by providing growth-limiting nutrients to their plant host through a mutualistic symbiotic relationship with host roots. We have previously shown that the effector protein MiSSP7 (Mycorrhiza-induced Small Secreted Protein 7) encoded by L. bicolor is necessary for the establishment of symbiosis with host trees, although the mechanistic reasoning behind this role was unknown. We demonstrate here that MiSSP7 interacts with the host protein PtJAZ6, a negative regulator of jasmonic acid (JA)-induced gene regulation in Populus. As with other characterized JASMONATE ZIM-DOMAIN (JAZ) proteins, PtJAZ6 interacts with PtCOI1 in the presence of the JA mimic coronatine, and PtJAZ6 is degraded in plant tissues after JA treatment. The association between MiSSP7 and PtJAZ6 is able to protect PtJAZ6 from this JA-induced degradation. Furthermore, MiSSP7 is able to block--or mitigate--the impact of JA on L. bicolor colonization of host roots. We show that the loss of MiSSP7 production by L. bicolor can be complemented by transgenically varying the transcription of PtJAZ6 or through inhibition of JA-induced gene regulation. We conclude that L. bicolor, in contrast to arbuscular mycorrhizal fungi and biotrophic pathogens, promotes mutualism by blocking JA action through the interaction of MiSSP7 with PtJAZ6. PMID:24847068

  6. Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes

    PubMed Central

    Plett, Jonathan M.; Daguerre, Yohann; Wittulsky, Sebastian; Vayssières, Alice; Deveau, Aurelie; Melton, Sarah J.; Kohler, Annegret; Morrell-Falvey, Jennifer L.; Brun, Annick; Veneault-Fourrey, Claire; Martin, Francis

    2014-01-01

    Ectomycorrhizal fungi, such as Laccaria bicolor, support forest growth and sustainability by providing growth-limiting nutrients to their plant host through a mutualistic symbiotic relationship with host roots. We have previously shown that the effector protein MiSSP7 (Mycorrhiza-induced Small Secreted Protein 7) encoded by L. bicolor is necessary for the establishment of symbiosis with host trees, although the mechanistic reasoning behind this role was unknown. We demonstrate here that MiSSP7 interacts with the host protein PtJAZ6, a negative regulator of jasmonic acid (JA)-induced gene regulation in Populus. As with other characterized JASMONATE ZIM-DOMAIN (JAZ) proteins, PtJAZ6 interacts with PtCOI1 in the presence of the JA mimic coronatine, and PtJAZ6 is degraded in plant tissues after JA treatment. The association between MiSSP7 and PtJAZ6 is able to protect PtJAZ6 from this JA-induced degradation. Furthermore, MiSSP7 is able to block—or mitigate—the impact of JA on L. bicolor colonization of host roots. We show that the loss of MiSSP7 production by L. bicolor can be complemented by transgenically varying the transcription of PtJAZ6 or through inhibition of JA-induced gene regulation. We conclude that L. bicolor, in contrast to arbuscular mycorrhizal fungi and biotrophic pathogens, promotes mutualism by blocking JA action through the interaction of MiSSP7 with PtJAZ6. PMID:24847068

  7. An Arabidopsis Plasma Membrane Proton ATPase Modulates JA Signaling and Is Exploited by the Pseudomonas syringae Effector Protein AvrB for Stomatal Invasion[OPEN

    PubMed Central

    Zhou, Zhaoyang; Wu, Yujiao; Yang, Yongqing; Du, Minmin; Zhang, Xiaojuan; Guo, Yan; Li, Chuanyou; Zhou, Jian-Min

    2015-01-01

    Stomata are natural openings through which many pathogenic bacteria enter plants. Successful bacterial pathogens have evolved various virulence factors to promote stomatal opening. Here, we show that the Pseudomonas syringae type III effector protein AvrB induces stomatal opening and enhances bacterial virulence in a manner dependent on RPM1-INTERACTING4 (RIN4), which promotes stomatal opening by positively regulating the Arabidopsis plasma membrane H+-ATPase (AHA1), which is presumed to directly regulate guard cell turgor pressure. In support of a role of AHA1 in AvrB-induced stomatal opening, AvrB enhances ATPase activity in plants. Unexpectedly, AHA1 promotes the interaction between the jasmonate (JA) receptor CORONATINE INSENSITIVE1 (COI1) and JASMONATE ZIM-DOMAIN (JAZ) proteins and enhances JA signaling. JA signaling is required for optimum stomatal infection in AHA1-active plants. Similarly, AvrB also induces the COI1-JAZ9 interaction and the degradation of multiple JAZ proteins. AvrB-induced stomatal opening and virulence require the canonical JA signaling pathway, which involves the COI1 and NAC transcription factors. The findings thus point to a previously unknown pathway exploited by P. syringae that acts upstream of COI1 to regulate JA signaling and stomatal opening. PMID:26198069

  8. The Mount Wilson Halo Mapping Project 1975-1985 I: The UBV(RI)_M_W Photometric System Compared with Other Standard Systems: The Adopted Trigonometric HR Diagram in (R-I)_M_W and (V-I)_M_W

    NASA Astrophysics Data System (ADS)

    Sandage, A.

    1997-11-01

    Photometry of stars is described that defines a UBV(RI)_M_W photometric system, established between 1975 and 1980 using the Mount Wilson 60-inch and 100-inch reflectors. The MW natural system has been reduced to the UBV(RI)_C Cape-Cousins system by linear equations for stars hotter than M0. Strong non-linear color and magnitude equations exit in R and I between the two systems for stars cooler than M0. The non-linearity is due to the change of the effective wavelengths of the red passbands caused by effect of the TiO b ands combines with the substantial difference between red response of the extended S20 cathodes used here and the GaAs cells used by Cousins (1976, 1980a,b), Bessell (1979, 1990), Landolt (1983, 1992), and others for the Cape system. We report (R-I)_M_W and (V-I)_M_W colors based on a linear extension of the _M_W natural system to the red for cool stars with (V-R)_Cape greater than 0.8, (V-I)_Cape greater than 1.8 (spectral types later than M0), as zero-pointed to the Cape system for bluer stars. Color equations are derived between the MW, the Cape, the Kron-Eggen, and Johnson photometric systems, and also the Hubble Space Telescope (V-I) colors as reduced to the (V-I)_C Cape system by Holtzman et al. (1995). The Kron-Eggen and the Cape-Cousins R and I systems differ in their zero points of color and magnitudes, showing that the Kron-Eggen and the Cousins systems are not the same. The appellation of a "Kron-Cousins" photometric system used in much of the current literature is incorrect. Preparatory to determining photometric parallaxes of local higher proper motion M dwarfs in Paper IV, trigonometric HR diagrams are determined in V, (V-R)_M_W and (V-I)_M_W on the Mount Wilson system using 160 available parallax stars with parallaxes larger than 0.099 arcsec. A first appendix illustrates the difference in the effective wavelengths of the Cape-Cousins, Kron-Eggen, and Johnson systems for cool stars, based on the observed slope coefficients of the color

  9. A Maize Jasmonate Zim-Domain Protein, ZmJAZ14, Associates with the JA, ABA, and GA Signaling Pathways in Transgenic Arabidopsis

    PubMed Central

    Li, Suzhen; Li, Jie; Xu, Miaoyun; Liu, Xiaoqing; Zhang, Shaojun; Zhao, Qianqian; Li, Ye; Fan, Yunliu; Chen, Rumei; Wang, Lei

    2015-01-01

    Jasmonate (JA) is an important signaling molecule involved in the regulation of many physiological and stress-related processes in plants. Jasmonate ZIM-domain (JAZ) proteins have been implicated in regulating JA signaling pathways and the cross talk between various phytohormones. Maize is not only an important cereal crop, but also a model plant for monocotyledon studies. Although many JAZ proteins have been characterized in Arabidopsis and rice, few reports have examined the function of JAZ proteins in maize. In this report, we examined the phylogenetic relationship and expression pattern of JAZ family genes in maize. In addition, a tassel and endosperm-specific JAZ gene, ZmJAZ14, was identified using microarray data analysis and real-time RT-PCR, and its expression was induced by polyethylene glycol (PEG), jasmonate (JA), abscisic acid (ABA), and gibberellins (GAs). ZmJAZ14 was shown to be localized in the nucleus and possessed no transcriptional activating activity, suggesting that it functions as a transcriptional regulator. We found that overexpression of ZmJAZ14 in Arabidopsis enhanced plant tolerance to JA and ABA treatment, as well as PEG stress, while it promoted growth under GA stimulus. Moreover, ZmJAZ14 interacted with a subset of transcription factors in Arabidopsis, and the accumulation of several marker genes involved in JA, ABA, and GA signaling pathways were altered in the overexpression lines. These results suggest that ZmJAZ14 may serve as a hub for the cross talk among the JA, ABA, and GA signaling pathways. Our results can be used to further characterize the function of JAZ family proteins in maize, and the gene cloned in this study may serve as a candidate for drought tolerance and growth promotion regulation in maize. PMID:25807368

  10. Antiallergic Activity of Ethanol Extracts of Arctium lappa L. Undried Roots and Its Active Compound, Oleamide, in Regulating FcεRI-Mediated and MAPK Signaling in RBL-2H3 Cells.

    PubMed

    Yang, Woong-Suk; Lee, Sung Ryul; Jeong, Yong Joon; Park, Dae Won; Cho, Young Mi; Joo, Hae Mi; Kim, Inhye; Seu, Young-Bae; Sohn, Eun-Hwa; Kang, Se Chan

    2016-05-11

    The antiallergic potential of Arctium lappa L. was investigated in Sprague-Dawley rats, ICR mice, and RBL-2H3 cells. Ethanol extract (90%) of A. lappa (ALE, 100 μg/mL) inhibited the degranulation rate by 52.9%, determined by the level of β-hexosaminidase. ALE suppressed passive cutaneous anaphylaxis (PCA) in rats and attenuated anaphylaxis and histamine release in mice. To identify the active compound of ALE, we subsequently fractionated and determined the level of β-hexosaminidase in all subfractions. Oleamide was identified as an active compound of ALE, which attenuated the secretion of histamine and the production of tumor necrosis factor (TNF)-α and interleukin-4 (IL-4) in cells treated with compound 48/80 or A23187/phorbol myristate acetate (PMA). Oleamide suppressed FcεRI-tyrosine kinase Lyn-mediated pathway, c-Jun N-terminal kinases (JNK/SAPK), and p38 mitogen-activated protein kinases (p38-MAPKs). These results showed that ALE and oleamide attenuated allergic reactions and should serve as a platform to search for compounds with antiallergic activity.

  11. Antiallergic Activity of Ethanol Extracts of Arctium lappa L. Undried Roots and Its Active Compound, Oleamide, in Regulating FcεRI-Mediated and MAPK Signaling in RBL-2H3 Cells.

    PubMed

    Yang, Woong-Suk; Lee, Sung Ryul; Jeong, Yong Joon; Park, Dae Won; Cho, Young Mi; Joo, Hae Mi; Kim, Inhye; Seu, Young-Bae; Sohn, Eun-Hwa; Kang, Se Chan

    2016-05-11

    The antiallergic potential of Arctium lappa L. was investigated in Sprague-Dawley rats, ICR mice, and RBL-2H3 cells. Ethanol extract (90%) of A. lappa (ALE, 100 μg/mL) inhibited the degranulation rate by 52.9%, determined by the level of β-hexosaminidase. ALE suppressed passive cutaneous anaphylaxis (PCA) in rats and attenuated anaphylaxis and histamine release in mice. To identify the active compound of ALE, we subsequently fractionated and determined the level of β-hexosaminidase in all subfractions. Oleamide was identified as an active compound of ALE, which attenuated the secretion of histamine and the production of tumor necrosis factor (TNF)-α and interleukin-4 (IL-4) in cells treated with compound 48/80 or A23187/phorbol myristate acetate (PMA). Oleamide suppressed FcεRI-tyrosine kinase Lyn-mediated pathway, c-Jun N-terminal kinases (JNK/SAPK), and p38 mitogen-activated protein kinases (p38-MAPKs). These results showed that ALE and oleamide attenuated allergic reactions and should serve as a platform to search for compounds with antiallergic activity. PMID:27087645

  12. Key comparison BIPM.RI(I)-K6 of the standards for absorbed dose to water at 10 g cm-2 of the NMIJ, Japan and the BIPM in accelerator photon beams

    NASA Astrophysics Data System (ADS)

    Picard, S.; Burns, D. T.; Roger, P.; Shimizu, M.; Morishita, Y.; Kato, M.; Tanaka, T.; Kurosawa, T.; Saito, N.

    2016-01-01

    A comparison of the dosimetry for accelerator photon beams was carried out between the National Metrology Institute of Japan (NMIJ) and the Bureau International des Poids et Mesures (BIPM) from 9 to 23 April 2015. The comparison was based on the determination of absorbed dose to water at 10 g cm-2 for three radiation qualities at the NMIJ. The results, reported as ratios of the NMIJ and the BIPM evaluations (and with the combined standard uncertainties given in parentheses), are 0.9966 (47) at 6 MV, 0.9965 (60) at 10 MV and 0.9953 (50) at 15 MV. This result is the eighth in the on-going BIPM.RI(I)-K6 series of comparisons. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  13. T cell receptor complexes containing Fc epsilon RI gamma homodimers in lieu of CD3 zeta and CD3 eta components: a novel isoform expressed on large granular lymphocytes

    PubMed Central

    1992-01-01

    CD3 zeta and CD3 eta form disulfide-linked homo- or heterodimers important in targeting partially assembled Ti alpha-beta/CD3 gamma delta epsilon T cell receptor (TCR) complexes to the cell surface and transducing stimulatory signals after antigen recognition. Here we identify a new TCR isoform expressed on splenic CD2+, CD3/Ti alpha- beta+, CD4-, CD8-, CD16+, NK1.1+ mouse large granular lymphocytes (LGL), which are devoid of CD3 zeta and CD3 eta proteins. The TCRs of this subset contain homodimers of the gamma subunit of the high affinity receptor for IgE (Fc epsilon RI gamma) in lieu of CD3 zeta and/or CD3 eta proteins. The LGL display natural killer-like activity and are cytotoxic for B cell hybridomas producing anti-CD3 epsilon and anti-CD16 monoclonal antibodies, demonstrating the signaling capacity of both TCR and CD16 in this cell type. These findings provide evidence for an additional level of complexity of TCR signal transduction isoforms in naturally occurring T cell subsets. PMID:1530959

  14. Ulcérations buccales et péri-anales: un mode de révélation inhabituel d'une granulomatose avec polyangéite - à propos d'un cas

    PubMed Central

    Jaafoura, Neirouz Ghannouchi; Thaljaoui, Wathek; Atig, Amira; Bouker, Ahmed; Khalifa, Mabrouk; Bahri, Fathi

    2014-01-01

    La granulomatose avec polyangéite, est une vascularite systémique rare qui touche avec prédilection les voies aériennes supérieures, les poumons et les reins. L'atteinte cutanéo-muqueuse ainsi que l'atteinte digestive ne sont pas inhabituelles mais elles sont rarement inaugurales de la maladie. Nous rapportons l'observation d'une femme âgée de 57 ans, ayant une granulomatose avec polyangéite multi-systémique avec comme premières manifestations une atteinte cutanéo-muqueuse à type de nécrose de la langue et d'ulcérations péri-anales ainsi que des rectorragies. La présence de signes radiologiques orientant vers une hémmorragie intra-alvéolaire, l'atteinte rénale, l'atteinte neurologique périphérique ainsi que la positivité des C-ANCA de type anti-PR3 ont permis de rattacher les manifestations dermatologiques à cette vascularite. Des manifestations cutanéo-muqueuses atypiques, au cours d'une granulomateuse avec polyangéite, doivent être connues par le clinicien pour un diagnostic et une prise en charge adéquate. PMID:25404981

  15. MdMYB9 and MdMYB11 are involved in the regulation of the JA-induced biosynthesis of anthocyanin and proanthocyanidin in apples.

    PubMed

    An, Xiu-Hong; Tian, Yi; Chen, Ke-Qin; Liu, Xiao-Juan; Liu, Dan-Dan; Xie, Xing-Bin; Cheng, Cun-Gang; Cong, Pei-Hua; Hao, Yu-Jin

    2015-04-01

    Anthocyanin and proanthocyanidin (PA) are important secondary metabolites and beneficial to human health. Their biosynthesis is induced by jasmonate (JA) treatment and regulated by MYB transcription factors (TFs). However, which and how MYB TFs regulate this process is largely unknown in apple. In this study, MdMYB9 and MdMYB11 which were induced by methyl jasmonate (MeJA) were functionally characterized. Overexpression of MdMYB9 or MdMYB11 promoted not only anthocyanin but also PA accumulation in apple calluses, and the accumulation was further enhanced by MeJA. Subsequently, yeast two-hybrid, pull-down and bimolecular fluorescence complementation assays showed that both MYB proteins interact with MdbHLH3. Moreover, Jasmonate ZIM-domain (MdJAZ) proteins interact with MdbHLH3. Furthermore, chromatin immunoprecipitation-quantitative PCR and yeast one-hybrid assays demonstrated that both MdMYB9 and MdMYB11 bind to the promoters of ANS, ANR and LAR, whereas MdbHLH3 is recruited to the promoters of MdMYB9 and MdMYB11 and regulates their transcription. In addition, transient expression assays indicated that overexpression of MdJAZ2 inhibits the recruitment of MdbHLH3 to the promoters of MdMYB9 and MdMYB11. Our findings provide new insight into the mechanism of how MeJA regulates anthocyanin and PA accumulation in apple. PMID:25527830

  16. MdMYB9 and MdMYB11 are involved in the regulation of the JA-induced biosynthesis of anthocyanin and proanthocyanidin in apples.

    PubMed

    An, Xiu-Hong; Tian, Yi; Chen, Ke-Qin; Liu, Xiao-Juan; Liu, Dan-Dan; Xie, Xing-Bin; Cheng, Cun-Gang; Cong, Pei-Hua; Hao, Yu-Jin

    2015-04-01

    Anthocyanin and proanthocyanidin (PA) are important secondary metabolites and beneficial to human health. Their biosynthesis is induced by jasmonate (JA) treatment and regulated by MYB transcription factors (TFs). However, which and how MYB TFs regulate this process is largely unknown in apple. In this study, MdMYB9 and MdMYB11 which were induced by methyl jasmonate (MeJA) were functionally characterized. Overexpression of MdMYB9 or MdMYB11 promoted not only anthocyanin but also PA accumulation in apple calluses, and the accumulation was further enhanced by MeJA. Subsequently, yeast two-hybrid, pull-down and bimolecular fluorescence complementation assays showed that both MYB proteins interact with MdbHLH3. Moreover, Jasmonate ZIM-domain (MdJAZ) proteins interact with MdbHLH3. Furthermore, chromatin immunoprecipitation-quantitative PCR and yeast one-hybrid assays demonstrated that both MdMYB9 and MdMYB11 bind to the promoters of ANS, ANR and LAR, whereas MdbHLH3 is recruited to the promoters of MdMYB9 and MdMYB11 and regulates their transcription. In addition, transient expression assays indicated that overexpression of MdJAZ2 inhibits the recruitment of MdbHLH3 to the promoters of MdMYB9 and MdMYB11. Our findings provide new insight into the mechanism of how MeJA regulates anthocyanin and PA accumulation in apple.

  17. An ABA-increased interaction of the PYL6 ABA receptor with MYC2 Transcription Factor: A putative link of ABA and JA signaling

    PubMed Central

    Aleman, Fernando; Yazaki, Junshi; Lee, Melissa; Takahashi, Yohei; Kim, Alice Y.; Li, Zixing; Kinoshita, Toshinori; Ecker, Joseph R.; Schroeder, Julian I.

    2016-01-01

    Abscisic acid (ABA) is a plant hormone that mediates abiotic stress tolerance and regulates growth and development. ABA binds to members of the PYL/RCAR ABA receptor family that initiate signal transduction inhibiting type 2C protein phosphatases. Although crosstalk between ABA and the hormone Jasmonic Acid (JA) has been shown, the molecular entities that mediate this interaction have yet to be fully elucidated. We report a link between ABA and JA signaling through a direct interaction of the ABA receptor PYL6 (RCAR9) with the basic helix-loop-helix transcription factor MYC2. PYL6 and MYC2 interact in yeast two hybrid assays and the interaction is enhanced in the presence of ABA. PYL6 and MYC2 interact in planta based on bimolecular fluorescence complementation and co-immunoprecipitation of the proteins. Furthermore, PYL6 was able to modify transcription driven by MYC2 using JAZ6 and JAZ8 DNA promoter elements in yeast one hybrid assays. Finally, pyl6 T-DNA mutant plants show an increased sensitivity to the addition of JA along with ABA in cotyledon expansion experiments. Overall, the present study identifies a direct mechanism for transcriptional modulation mediated by an ABA receptor different from the core ABA signaling pathway, and a putative mechanistic link connecting ABA and JA signaling pathways. PMID:27357749

  18. The MeJA-inducible copper amine oxidase AtAO1 is expressed in xylem tissue and guard cells.

    PubMed

    Ghuge, Sandip A; Carucci, Andrea; Rodrigues-Pousada, Renato A; Tisi, Alessandra; Franchi, Stefano; Tavladoraki, Paraskevi; Angelini, Riccardo; Cona, Alessandra

    2015-01-01

    Copper amine oxidases oxidize the polyamine putrescine to 4-aminobutanal with the production of the plant signal molecule hydrogen peroxide (H2O2) and ammonia. The Arabidopsis (Arabidopsis thaliana) gene At4g14940 (AtAO1, previously referred to as ATAO1) encodes an apoplastic copper amine oxidase expressed in lateral root cap cells and developing xylem, especially in root protoxylem and metaxylem precursors. In our recent study, we demonstrated that AtAO1 expression is strongly induced in the root vascular tissues by the wound-signal hormone methyl jasmonate (MeJA). Furthermore, we also demonstrated that the H2O2 derived by the AtAO1-driven oxidation of putrescine, mediates the MeJA-induced early protoxylem differentiation in Arabidopsis roots. H2O2 may contribute to protoxylem differentiation by signaling developmental cell death and by acting as co-substrate in peroxidase-mediated cell wall stiffening and lignin polymerization. Here, by the means of AtAO1 promoter::green fluorescent protein-β-glucuronidase (AtAO1::GFP-GUS) fusion analysis, we show that a strong AtAO1 gene expression occurs also in guard cells of leaves and flowers. The high expression levels of AtAO1 in tissues or cell types regulating water supply and water loss may suggest a role of the encoded protein in water balance homeostasis, by modulating coordinated adjustments in anatomical and functional features of xylem tissue and guard cells during acclimation to adverse environmental conditions.

  19. Integrated Performance of Next Generation High Data Rate Receiver and AR4JA LDPC Codec for Space Communications

    NASA Technical Reports Server (NTRS)

    Cheng, Michael K.; Lyubarev, Mark; Nakashima, Michael A.; Andrews, Kenneth S.; Lee, Dennis

    2008-01-01

    Low-density parity-check (LDPC) codes are the state-of-the-art in forward error correction (FEC) technology that exhibits capacity approaching performance. The Jet Propulsion Laboratory (JPL) has designed a family of LDPC codes that are similar in structure and therefore, leads to a single decoder implementation. The Accumulate-Repeat-by-4-Jagged- Accumulate (AR4JA) code design offers a family of codes with rates 1/2, 2/3, 4/5 and lengths 1024, 4096, 16384 information bits. Performance is less than one dB from capacity for all combinations.Integrating a stand-alone LDPC decoder with a commercial-off-the-shelf (COTS) receiver faces additional challenges than building a single receiver-decoder unit from scratch. In this work, we outline the issues and show that these additional challenges can be over-come by simple solutions. To demonstrate that an LDPC decoder can be made to work seamlessly with a COTS receiver, we interface an AR4JA LDPC decoder developed on a field-programmable gate array (FPGA) with a modern high data rate receiver and mea- sure the combined receiver-decoder performance. Through optimizations that include an improved frame synchronizer and different soft-symbol scaling algorithms, we show that a combined implementation loss of less than one dB is possible and therefore, most of the coding gain evidence in theory can also be obtained in practice. Our techniques can benefit any modem that utilizes an advanced FEC code.

  20. ERF5 and ERF6 play redundant roles as positive regulators of JA/Et-mediated defense against Botrytis cinerea in Arabidopsis.

    PubMed

    Moffat, Caroline S; Ingle, Robert A; Wathugala, Deepthi L; Saunders, Nigel J; Knight, Heather; Knight, Marc R

    2012-01-01

    The ethylene response factor (ERF) family in Arabidopsis thaliana comprises 122 members in 12 groups, yet the biological functions of the majority remain unknown. Of the group IX ERFs, the IXc subgroup has been studied the most, and includes ERF1, ERF14 and ORA59, which play roles in plant innate immunity. Here we investigate the biological functions of two members of the less studied IXb subgroup: ERF5 and ERF6. In order to identify potential targets of these transcription factors, microarray analyses were performed on plants constitutively expressing either ERF5 or ERF6. Expression of defense genes, JA/Et-responsive genes and genes containing the GCC box promoter motif were significantly upregulated in both ERF5 and ERF6 transgenic plants, suggesting that ERF5 and ERF6 may act as positive regulators of JA-mediated defense and potentially overlap in their function. Since defense against necrotrophic pathogens is generally mediated through JA/Et-signalling, resistance against the fungal necrotroph Botrytis cinerea was examined. Constitutive expression of ERF5 or ERF6 resulted in significantly increased resistance. Although no significant difference in susceptibility to B. cinerea was observed in either erf5 or erf6 mutants, the erf5 erf6 double mutant showed a significant increase in susceptibility, which was likely due to compromised JA-mediated gene expression, since JA-induced gene expression was reduced in the double mutant. Taken together these data suggest that ERF5 and ERF6 play positive but redundant roles in defense against B. cinerea. Since mutual antagonism between JA/Et and salicylic acid (SA) signalling is well known, the UV-C inducibility of an SA-inducible gene, PR-1, was examined. Reduced inducibilty in both ERF5 and ERF6 constitutive overexepressors was consistent with suppression of SA-mediated signalling, as was an increased susceptibility to avirulent Pseudomonas syringae. These data suggest that ERF5 and ERF6 may also play a role in the

  1. Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus “Ferrovum”

    PubMed Central

    Ullrich, Sophie R.; Poehlein, Anja; Tischler, Judith S.; González, Carolina; Ossandon, Francisco J.; Daniel, Rolf; Holmes, David S.; Schlömann, Michael; Mühling, Martin

    2016-01-01

    Background Members of the genus “Ferrovum” are ubiquitously distributed in acid mine drainage (AMD) waters which are characterised by their high metal and sulfate loads. So far isolation and microbiological characterisation have only been successful for the designated type strain “Ferrovum myxofaciens” P3G. Thus, knowledge about physiological characteristics and the phylogeny of the genus “Ferrovum” is extremely scarce. Objective In order to access the wider genetic pool of the genus “Ferrovum” we sequenced the genome of a “Ferrovum”-containing mixed culture and successfully assembled the almost complete genome sequence of the novel “Ferrovum” strain JA12. Phylogeny and Lifestyle The genome-based phylogenetic analysis indicates that strain JA12 and the type strain represent two distinct “Ferrovum” species. “Ferrovum” strain JA12 is characterised by an unusually small genome in comparison to the type strain and other iron oxidising bacteria. The prediction of nutrient assimilation pathways suggests that “Ferrovum” strain JA12 maintains a chemolithoautotrophic lifestyle utilising carbon dioxide and bicarbonate, ammonium and urea, sulfate, phosphate and ferrous iron as carbon, nitrogen, sulfur, phosphorous and energy sources, respectively. Unique Metabolic Features The potential utilisation of urea by “Ferrovum” strain JA12 is moreover remarkable since it may furthermore represent a strategy among extreme acidophiles to cope with the acidic environment. Unlike other acidophilic chemolithoautotrophs “Ferrovum” strain JA12 exhibits a complete tricarboxylic acid cycle, a metabolic feature shared with the closer related neutrophilic iron oxidisers among the Betaproteobacteria including Sideroxydans lithotrophicus and Thiobacillus denitrificans. Furthermore, the absence of characteristic redox proteins involved in iron oxidation in the well-studied acidophiles Acidithiobacillus ferrooxidans (rusticyanin) and Acidithiobacillus

  2. Selection of a recombinant Marek's disease virus in vivo through expression of the Marek's EcoRI-Q (Meq)-encoded oncoprotein: characterization of an rMd5-based mutant expressing the Meq of strain RB-1B.

    PubMed

    Kumar, Pankaj; Dong, Huimin; Lenihan, Dawn; Gaddamanugu, Syamsundar; Katneni, Upendra; Shaikh, Shireen; Tavlarides-Hontz, Phaedra; Reddy, Sanjay M; Peters, Wachen; Parcells, Mark S

    2012-06-01

    Marek's disease (MD) is a highly contagious viral disease of chickens (Gallus gallus domesticus) caused by MD virus (MDV), characterized by paralysis, neurologic signs, and the rapid onset of T-cell lymphomas. MDV-induced T-cell transformation requires a basic leucine zipper protein called Marek's EcoRI-Q-encoded protein (Meq). We have identified mutations in the coding sequence of Meq that correlated with virus pathotype (virulent, very virulent, and very virulent plus). The aim of this study was to determine whether recombinant viruses could be isolated based on Meq expression through in vivo selection. Chicken embryo fibroblasts (CEFs) were cotransfected with an rMd5 strain-based Meq deletion virus (rMd5deltaMeq) and meq loci from strains representing different pathotypes of MDV. Transfected CEFs were inoculated into chickens in two independent studies. We were able to isolate a single recombinant virus, rMDV-1137, in a contact-exposed chicken. rMDV-1137 had recombined two copies of the meq gene of RB-1B and was found to have pathogenicity similar to both RB-1B and rMd5 parental strains. We found the RB-1B- and rMd5-induced lymphomas showed differences in composition and that rMDV-1137-induced lymphomas were intermediate in their composition. We were able to establish cell lines from both RB-1B- (MDCC-UD35, -UD37) and rMDV-1137 (MDCC-UD36, -UD38)-induced, but not rMd5-induced, lymphomas. To date, no rMd5- or parent Md5-transformed T-cell lines have been reported. Our results suggest that 1) a recombinant MDV can be selected on the basis of oncogenicity; 2) changes in Meq sequence seem to affect tumor composition and the ability to establish cell lines; and 3) in addition to meq, other genomic loci affect MDV pathogenicity and oncogenicity.

  3. Hypothyroidism After Head-and-Neck Radiotherapy in Children and Adolescents: Preliminary Results of the 'Registry for the Evaluation of Side Effects After Radiotherapy in Childhood and Adolescence' (RiSK)

    SciTech Connect

    Boelling, Tobias; Geisenheiser, Alina; Pape, Hildegard; Martini, Carmen; Ruebe, Christian; Fischedick, Karin; Kortmann, Rolf-Dieter; Gerss, Joachim; Koch, Raphael; Willich, Normann

    2011-12-01

    Purpose: The 'Registry for the Evaluation of Side Effects After Radiotherapy in Childhood and Adolescence' (RiSK) has been established to prospectively characterize dose-volume effects of radiation in terms of side effects. The aim of this analysis was to characterize the function of the thyroid gland after radiotherapy to the head-and-neck region in children and adolescents. Methods and Materials: Detailed information regarding radiation doses to at-risk organs has been collected across Germany since 2001. Thyroid function was evaluated by blood value examinations of thyroid-stimulating hormone, triiodothyronine, and thyroxine. Information regarding thyroid hormone substitution was requested from the treating physicians. Results: Until May 2009, 1,086 patients from 62 centers were recruited, including 404 patients (median age, 10.9 years) who had received radiotherapy to the thyroid gland and/or hypophysis. Follow-up information was available for 264 patients (60.9%; median follow-up, 40 months), with 60 patients (22.7%) showing pathologic values. In comparison to patients treated with prophylactic cranial irradiation (median dose, 12 Gy), patients with radiation doses of 15 to 25 Gy to the thyroid gland had a hazard ratio of 3.072 (p = 0.002) for the development of pathologic thyroid blood values. Patients with greater than 25 Gy to the thyroid gland and patients who underwent craniospinal irradiation had hazard ratios of 3.768 (p = 0.009) and 5.674 (p < 0.001), respectively. The cumulative incidence of thyroid hormone substitution therapy did not differ between defined subgroups. Conclusions: Radiation-induced thyroid function impairment, including damage to the thyroid gland and/or hypophysis, can frequently be observed after radiotherapy in children. A structured follow-up examination is advised.

  4. Leading the Way to RiPPs

    PubMed Central

    Link, A. James

    2016-01-01

    Many peptide-based natural products require a leader peptide to reach their final modified form, but identifying general rules for leader peptide interactions have been stymied by the diversity of these molecules. Two papers reporting crystallographic and bioinformatic analysis of these systems now reveal a structurally-conserved domain that mediates leader peptide binding. PMID:26196773

  5. 76 FR 59596 - Anchorage Regulations; Newport, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-27

    ... expand the dimensions of anchorage ``D'' at Newport, Rhode Island, to better accommodate increasing... FR 3316). Public Meeting We do not now plan to hold a public meeting. But, you may submit a request.... This proposed rule would change the shape and expand the dimensions of anchorage ``D'' at...

  6. Gene-to-metabolite network for biosynthesis of lignans in MeJA-elicited Isatis indigotica hairy root cultures

    PubMed Central

    Chen, Ruibing; Li, Qing; Tan, Hexin; Chen, Junfeng; Xiao, Ying; Ma, Ruifang; Gao, Shouhong; Zerbe, Philipp; Chen, Wansheng; Zhang, Lei

    2015-01-01

    Root and leaf tissue of Isatis indigotica shows notable anti-viral efficacy, and are widely used as “Banlangen” and “Daqingye” in traditional Chinese medicine. The plants' pharmacological activity is attributed to phenylpropanoids, especially a group of lignan metabolites. However, the biosynthesis of lignans in I. indigotica remains opaque. This study describes the discovery and analysis of biosynthetic genes and AP2/ERF-type transcription factors involved in lignan biosynthesis in I. indigotica. MeJA treatment revealed differential expression of three genes involved in phenylpropanoid backbone biosynthesis (IiPAL, IiC4H, Ii4CL), five genes involved in lignan biosynthesis (IiCAD, IiC3H, IiCCR, IiDIR, and IiPLR), and 112 putative AP2/ERF transcription factors. In addition, four intermediates of lariciresinol biosynthesis were found to be induced. Based on these results, a canonical correlation analysis using Pearson's correlation coefficient was performed to construct gene-to-metabolite networks and identify putative key genes and rate-limiting reactions in lignan biosynthesis. Over-expression of IiC3H, identified as a key pathway gene, was used for metabolic engineering of I. indigotica hairy roots, and resulted in an increase in lariciresinol production. These findings illustrate the utility of canonical correlation analysis for the discovery and metabolic engineering of key metabolic genes in plants. PMID:26579184

  7. Extending MAM5 Meta-Model and JaCalIV E Framework to Integrate Smart Devices from Real Environments.

    PubMed

    Rincon, J A; Poza-Lujan, Jose-Luis; Julian, V; Posadas-Yagüe, Juan-Luis; Carrascosa, C

    2016-01-01

    This paper presents the extension of a meta-model (MAM5) and a framework based on the model (JaCalIVE) for developing intelligent virtual environments. The goal of this extension is to develop augmented mirror worlds that represent a real and virtual world coupled, so that the virtual world not only reflects the real one, but also complements it. A new component called a smart resource artifact, that enables modelling and developing devices to access the real physical world, and a human in the loop agent to place a human in the system have been included in the meta-model and framework. The proposed extension of MAM5 has been tested by simulating a light control system where agents can access both virtual and real sensor/actuators through the smart resources developed. The results show that the use of real environment interactive elements (smart resource artifacts) in agent-based simulations allows to minimize the error between simulated and real system.

  8. Extending MAM5 Meta-Model and JaCalIV E Framework to Integrate Smart Devices from Real Environments.

    PubMed

    Rincon, J A; Poza-Lujan, Jose-Luis; Julian, V; Posadas-Yagüe, Juan-Luis; Carrascosa, C

    2016-01-01

    This paper presents the extension of a meta-model (MAM5) and a framework based on the model (JaCalIVE) for developing intelligent virtual environments. The goal of this extension is to develop augmented mirror worlds that represent a real and virtual world coupled, so that the virtual world not only reflects the real one, but also complements it. A new component called a smart resource artifact, that enables modelling and developing devices to access the real physical world, and a human in the loop agent to place a human in the system have been included in the meta-model and framework. The proposed extension of MAM5 has been tested by simulating a light control system where agents can access both virtual and real sensor/actuators through the smart resources developed. The results show that the use of real environment interactive elements (smart resource artifacts) in agent-based simulations allows to minimize the error between simulated and real system. PMID:26926691

  9. Extending MAM5 Meta-Model and JaCalIV E Framework to Integrate Smart Devices from Real Environments

    PubMed Central

    2016-01-01

    This paper presents the extension of a meta-model (MAM5) and a framework based on the model (JaCalIVE) for developing intelligent virtual environments. The goal of this extension is to develop augmented mirror worlds that represent a real and virtual world coupled, so that the virtual world not only reflects the real one, but also complements it. A new component called a smart resource artifact, that enables modelling and developing devices to access the real physical world, and a human in the loop agent to place a human in the system have been included in the meta-model and framework. The proposed extension of MAM5 has been tested by simulating a light control system where agents can access both virtual and real sensor/actuators through the smart resources developed. The results show that the use of real environment interactive elements (smart resource artifacts) in agent-based simulations allows to minimize the error between simulated and real system. PMID:26926691

  10. The JaCVAM international validation study on the in vivo comet assay: Selection of test chemicals.

    PubMed

    Morita, Takeshi; Uno, Yoshifumi; Honma, Masamitsu; Kojima, Hajime; Hayashi, Makoto; Tice, Raymond R; Corvi, Raffaella; Schechtman, Leonard

    2015-07-01

    The Japanese Center for the Validation of Alternative Methods (JaCVAM) sponsored an international prevalidation and validation study of the in vivo rat alkaline pH comet assay. The main objective of the study was to assess the sensitivity and specificity of the assay for correctly identifying genotoxic carcinogens, as compared with the traditional rat liver unscheduled DNA synthesis assay. Based on existing carcinogenicity and genotoxicity data and chemical class information, 90 chemicals were identified as primary candidates for use in the validation study. From these 90 chemicals, 46 secondary candidates and then 40 final chemicals were selected based on a sufficiency of carcinogenic and genotoxic data, differences in chemical class or genotoxic or carcinogenic mode of action (MOA), availability, price, and ease of handling. These 40 chemicals included 19 genotoxic carcinogens, 6 genotoxic non-carcinogens, 7 non-genotoxic carcinogens and 8 non-genotoxic non-carcinogens. "Genotoxicity" was defined as positive in the Ames mutagenicity test or in one of the standard in vivo genotoxicity tests (primarily the erythrocyte micronucleus assay). These chemicals covered various chemicals classes, MOAs, and genotoxicity profiles and were considered to be suitable for the purpose of the validation study. General principles of chemical selection for validation studies are discussed.

  11. The Combined Effects of Ethylene and MeJA on Metabolic Profiling of Phenolic Compounds in Catharanthus roseus Revealed by Metabolomics Analysis.

    PubMed

    Liu, Jia; Liu, Yang; Wang, Yu; Zhang, Zhong-Hua; Zu, Yuan-Gang; Efferth, Thomas; Tang, Zhong-Hua

    2016-01-01

    Phenolic compounds belong to a class of secondary metabolites and are implicated in a wide range of responsive mechanisms in plants triggered by both biotic and abiotic elicitors. In this study, we approached the combinational effects of ethylene and MeJA (methyl jasmonate) on phenolic compounds profiles and gene expressions in the medicinal plant Catharanthus roseus. In virtue of a widely non-targeted metabolomics method, we identified a total of 34 kinds of phenolic compounds in the leaves, composed by 7 C6C1-, 11 C6C3-, and 16 C6C3C6 compounds. In addition, 7 kinds of intermediates critical for the biosynthesis of phenolic compounds and alkaloids were identified and discussed with phenolic metabolism. The combinational actions of ethylene and MeJA effectively promoted the total phenolic compounds, especially the C6C1 compounds (such as salicylic acid, benzoic acid) and C6C3 ones (such as cinnamic acid, sinapic acid). In contrast, the C6C3C6 compounds displayed a notably inhibitory trend in this case. Subsequently, the gene-to-metabolite networks were drawn up by searching for correlations between the expression profiles of 5 gene tags and the accumulation profiles of 41 metabolite peaks. Generally, we provide an insight into the controlling mode of ethylene-MeJA combination on phenolic metabolism in C. roseus leaves. PMID:27375495

  12. The Combined Effects of Ethylene and MeJA on Metabolic Profiling of Phenolic Compounds in Catharanthus roseus Revealed by Metabolomics Analysis

    PubMed Central

    Liu, Jia; Liu, Yang; Wang, Yu; Zhang, Zhong-Hua; Zu, Yuan-Gang; Efferth, Thomas; Tang, Zhong-Hua

    2016-01-01

    Phenolic compounds belong to a class of secondary metabolites and are implicated in a wide range of responsive mechanisms in plants triggered by both biotic and abiotic elicitors. In this study, we approached the combinational effects of ethylene and MeJA (methyl jasmonate) on phenolic compounds profiles and gene expressions in the medicinal plant Catharanthus roseus. In virtue of a widely non-targeted metabolomics method, we identified a total of 34 kinds of phenolic compounds in the leaves, composed by 7 C6C1-, 11 C6C3-, and 16 C6C3C6 compounds. In addition, 7 kinds of intermediates critical for the biosynthesis of phenolic compounds and alkaloids were identified and discussed with phenolic metabolism. The combinational actions of ethylene and MeJA effectively promoted the total phenolic compounds, especially the C6C1 compounds (such as salicylic acid, benzoic acid) and C6C3 ones (such as cinnamic acid, sinapic acid). In contrast, the C6C3C6 compounds displayed a notably inhibitory trend in this case. Subsequently, the gene-to-metabolite networks were drawn up by searching for correlations between the expression profiles of 5 gene tags and the accumulation profiles of 41 metabolite peaks. Generally, we provide an insight into the controlling mode of ethylene-MeJA combination on phenolic metabolism in C. roseus leaves. PMID:27375495

  13. Combination comet/micronucleus assay validation performed by BioReliance under the JaCVAM initiative.

    PubMed

    Pant, Kamala; Krsmanovic, Ljubica; Bruce, Shannon Wilson; Kelley, Tawney; Arevalo, Mirna; Atta-Safoh, Samuel; Debelie, Fekadu; La Force, Michelle L Klug; Springer, Sandra; Sly, Jamie; Paranjpe, Madhav; Lawlor, Timothy; Aardema, Marilyn

    2015-07-01

    In the international validation study of the in vivo rat alkaline comet assay (comet assay), the Japanese Center for the Validation of Alternative Methods (JaCVAM) provided three coded chemicals to BioReliance, 1,3-dichloropropene, ethionamide and busulfan, to be tested in a combined in vivo comet/micronucleus assay. Induction of DNA damage (comet) in liver, stomach and jejunum (1,3-dichloropropene only) cells, and induction of MNPCEs in bone marrow, were examined in male Sprague-Dawley (Hsd:SD) rats following oral administration of the test chemical for three consecutive days. A dose range finding (DRF) test was performed with each chemical to determine the maximum tolerated dose (MTD). Based on the results of the DRF test; 1,3-dichloropropene was tested at 50, 100 and 200 mg/kg/day; ethionamide was tested at 125, 250 and 500 mg/kg/day, and busulfan was tested at 10, 20 and 40 mg/kg/day. The results indicated that 1,3-dichloropropene induced DNA damage only in liver cells at all three test article doses, while no effects were observed in the stomach and jejunum cells. Additionally, it did not increase MNPCEs in the bone marrow. 1,3-Dichloropropene was concluded to be negative in the MN assay but positive in the comet assay. Ethionamide did not induce DNA damage in liver. However, in stomach, statistically significant decreases (although still within historical range) in % tail DNA at all test article doses compared to the vehicle control were observed. There was no increase in MNPCEs in the bone marrow. Thus, ethionamide was concluded to be negative in the comet/MN combined assay. Busulfan did not induce DNA damage in any of the organs tested (liver and stomach) but it did induce a significant increase in MNPCEs in the bone marrow. Busulfan was concluded to be negative in the comet assay but positive in the MN assay.

  14. Update of the BIPM comparison BIPM.RI(II)-K1.Sn-113 of activity measurements of the radionuclide 113Sn to include the 2010 results of the PTB (Germany) and the LNE-LNHB (France), and the 2011 result of the CIEMAT (Spain)

    NASA Astrophysics Data System (ADS)

    Michotte, C.; Ratel, G.; Courte, S.; Kossert, K.; Nähle, O.; Bobin, C.; Lépy, M.-C.; Moune, M.; Garcia-Toraño, E.; Peyres, V.; Roteta, M.

    2016-01-01

    Since 1975, seven national metrology institutes (NMI) have submitted eleven samples of known activity of 113Sn to the International Reference System (SIR) for activity comparison at the Bureau International des Poids et Mesures (BIPM), with comparison identifier BIPM.RI(II)-K1.Sn-113. The values of the activity submitted were between about 0.7 MBq and 22 MBq. The present primary standardization results for the PTB, Germany and the LNE-LNHB, France, replace their earlier results of 1989 and 1992, respectively. A key comparison reference value (KCRV) has been evaluated for the first time for 113Sn. There are only three results remaining in the BIPM.RI(II)-K1.Sn-113 comparison, all the previously published ones being outdated. The degrees of equivalence between each of these three equivalent activities measured in the SIR and the KCRV have been calculated and the results are given in the form of a table. A graphical presentation is also given. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  15. Energy Consumption of Battery-Operated Screwdriver at Assembling Fixed Threaded Joints / Akumulatora Skrūvgrieža Elektroenerģijas Patēriņa Aprēķins, Veicot Nekustīga Vītņu Savienojuma Salikšanu Atkarībā No Operatora Reakcijas Laika

    NASA Astrophysics Data System (ADS)

    Grinevich, I.; Mozga, N.; Rudzitis, J.

    2013-10-01

    The electrical energy consumption of battery-operated screwdrivers, which are widely used in many industries, e.g. automotive, heavy, chemical, etc., can be considerably reduced. This would allow increasing the service life of a battery and reducing the time of its charging, thus increasing the productivity and decreasing the prime cost of this battery. It is shown that up to 17.9% of electrical energy could be saved at assembling fixed threaded joints by removing power from the screwdriver immediately after reaching the required tightening torque. Dotajā rakstā uzmanība tiek pievērsta akumulatora skrūvgrieža elektroenerģijas patēriņa samazināšanas iespējām sakarā ar problēmas aktualitāti šīs grupas plaši pielietotajiem instrumentiem. Elektroenerģijas patēriņa samazināšana masveida ražošanā, kur tiek izmantoti akumulatora skrūvgrieži, ļautu paildzināt akumulatora baterijas kalpošanas mūžu un samazināt uzlādēšanas laiku, kas, savukārt, novestu pie ražības palielināšanas un produkcijas pašizmaksas samazināšanas.

  16. Update of the BIPM comparison BIPM.RI(II)-K1.Cu-64 of activity measurements of the radionuclide 64Cu to include the 2009 results of the CMI-IIR (Czech Rep.) and the NPL (UK), the 2010 result of the LNE-LNHB (France) and the 2011 result of the ENEA-INMRI (Italy)

    NASA Astrophysics Data System (ADS)

    Michotte, C.; Ratel, G.; Courte, S.; Sochorovà, J.; Auerbach, P.; Keightley, J.; Johansson, L.; Bakhshandeiar, E.; Cassette, P.; Moune, M.; Capogni, M.; De Felice, P.

    2013-01-01

    Since 2009, four national metrology institutes (NMI) have submitted four samples of known activity of 64Cu to the International Reference System (SIR) for activity comparison at the Bureau International des Poids et Mesures (BIPM), with comparison identifier BIPM.RI(II)-K1.Cu-64. The values of the activity submitted were between about 3 MBq and 260 MBq. There are now five results in the BIPM.RI(II)-K1.Cu-64 comparison. A key comparison reference value (KCRV) has been calculated for the first time for this nuclide. The degrees of equivalence between each equivalent activity measured in the SIR and the KCRV have been calculated and the results are given in the form of a table. A graphical presentation is also given. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  17. Mineralogical characterization of tailing dams: incidence of abandoned mining works on soil pollution (Linares, Jaén)

    NASA Astrophysics Data System (ADS)

    de la Torre, M. J.; Hidalgo, C.; Rey, J.; Martínez, J.

    2012-04-01

    The metallogenic district of Linares-La Carolina (Jaén, Spain) consists of dyke mineralizations mainly of galena, accompanied by blende, chalcopyrite and barite. Associated to these abandoned mines, relatively extensive areas occupied by spoil heaps and tailing impoundments exist and constitute potential sources of soil pollution by metals and semimetals. In order to analyze the pollution potential of these mining wastes, we have carried out a mineralogical and geochemical study of seven tailing dams and surrounding soils in the area. The mineralogy of the samples was studied by x-ray diffraction (XRD) and scanning electron microscope (SEM). In addition, the total metal content of samples was determined by inductively coupled plasma mass spectrometry (ICP-MS) analysis. Samples were taken from the first 30 cm of the waste piles and soil deposits and white efflorescences were also obtained from the surface of the tailings. In all analyzed heaps, high to very high total contents in Pb (1220-22890 mg/kg), Zn (150-51280 mg/kg), Mn (2658-4160 mg/kg), Ba (1026-19610 mg/kg) and Fe (19400-138000 mg/kg) were observed. The concentrations for these same elements in the studied soils range from 527-9900 mg/kg for Pb, 27-1700 mg/kg for Zn, 506-2464 mg/kg for Mn, 2832-4306 for Ba and 8642-29753 mg/kg for Fe, and these figures indicate a contamination of the soils, according to the guidelines established by the Spanish law. The XRD and SEM results indicate that the tailings are primarily constituted by gangue of the exploited mineralization: quartz, calcite, ankerite, feldspars and phyllosilicates. They are inherited, primary mineral phases. Galena, also primary, appears in low proportion, as well as lepidocrocite, melanterite and cerussite, being these three last secondary minerals and indicating a certain remobilization of metal cations, especially lead and iron. On the other hand, quartz and phyllosilicates predominate in the soils, in which, in addition, is identified a

  18. Investigation of sodium arsenite, thioacetamide, and diethanolamine in the alkaline comet assay: Part of the JaCVAM comet validation exercise.

    PubMed

    Beevers, Carol; Henderson, Debbie; Lillford, Lucinda

    2015-07-01

    As part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiative international validation study of the in vivo rat alkaline comet assay (comet assay), we examined sodium arsenite, thioacetamide, and diethanolamine. Using the JaCVAM approved study protocol version 14.2, each chemical was tested in male rats up to maximum tolerated dose levels and DNA damage in the liver and stomach was assessed approximately 3h after the final administration by gavage. Histopathology assessments of liver and stomach sections from the same animals were also examined for evidence of cytotoxicity or necrosis. No evidence of DNA damage was observed in the stomach of animals treated with sodium arsenite at 7.5, 15, or 30 mg/kg/day. However, equivocal findings were found in the liver, where increases in DNA migration were observed in two independent experiments, but not in all treated animals and not at the same dose levels. Thioacetamide caused an increase in DNA migration in the stomach of rats treated at 19, 38, and 75 mg/kg/day, but not in the liver, despite evidence of marked hepatotoxicity following histopathology assessments. No evidence of DNA damage was observed in the stomach or liver of animals treated with diethanolamine at 175, 350, or 700 mg/kg/day. PMID:26212308

  19. GA3 and other signal regulators (MeJA and IAA) improve xanthumin biosynthesis in different manners in Xanthium strumarium L.

    PubMed

    Li, Changfu; Chen, Fangfang; Zhang, Yansheng

    2014-01-01

    Xanthanolides from Xanthium strumarium L. exhibit various pharmacological activities and these compounds are mainly produced in the glandular trichomes of aerial plant parts. The regulation of xanthanolide biosynthesis has never been reported in the literature. In this study, the effects of phytohormonal stimulation on xanthumin (a xanthanolide compound) biosynthesis, glandular trichomes and germacrene A synthase (GAS) gene expression in X. strumarium L. young leaves were investigated. The exogenous applications of methyl jasmonate (MeJA), indole-3-acetic acid (IAA), and gibberrellin A3 (GA3) at appropriate concentrations were all found to improve xanthumin biosynthesis, but in different ways. It was suggested that a higher gland density stimulated by MeJA (400 µM) or IAA (200 µM) treatment caused at least in part an improvement in xanthumin production, whereas GA3 (10 µM) led to an improvement by up-regulating xanthumin biosynthetic genes within gland cells, not by forming more glandular trichomes. Compared to the plants before the flowering stage, plants that had initiated flowering showed enhanced xanthumin biosynthesis, but no higher gland density, an effect was similar to that caused by exogenous GA3 treatment. PMID:25157461

  20. Investigation of sodium arsenite, thioacetamide, and diethanolamine in the alkaline comet assay: Part of the JaCVAM comet validation exercise.

    PubMed

    Beevers, Carol; Henderson, Debbie; Lillford, Lucinda

    2015-07-01

    As part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiative international validation study of the in vivo rat alkaline comet assay (comet assay), we examined sodium arsenite, thioacetamide, and diethanolamine. Using the JaCVAM approved study protocol version 14.2, each chemical was tested in male rats up to maximum tolerated dose levels and DNA damage in the liver and stomach was assessed approximately 3h after the final administration by gavage. Histopathology assessments of liver and stomach sections from the same animals were also examined for evidence of cytotoxicity or necrosis. No evidence of DNA damage was observed in the stomach of animals treated with sodium arsenite at 7.5, 15, or 30 mg/kg/day. However, equivocal findings were found in the liver, where increases in DNA migration were observed in two independent experiments, but not in all treated animals and not at the same dose levels. Thioacetamide caused an increase in DNA migration in the stomach of rats treated at 19, 38, and 75 mg/kg/day, but not in the liver, despite evidence of marked hepatotoxicity following histopathology assessments. No evidence of DNA damage was observed in the stomach or liver of animals treated with diethanolamine at 175, 350, or 700 mg/kg/day.

  1. PP2C-like Promoter and Its Deletion Variants Are Induced by ABA but Not by MeJA and SA in Arabidopsis thaliana.

    PubMed

    Bhalothia, Purva; Sangwan, Chetna; Alok, Anshu; Mehrotra, Sandhya; Mehrotra, Rajesh

    2016-01-01

    Gene expression is mediated through interaction between cis regulatory elements and its cognate transcription factors. Cis regulatory elements are defined as non-coding DNA sequences that provide the binding sites for transcription factors and are clustered in the upstream region of genes. ACGT cis regulatory element is one of the important cis regulatory elements found to be involved in diverse biological processes like auxin response, salicylic acid (SA) response, UV light response, ABA response and jasmonic acid (JA) response. We identified through in silico analysis that the upstream region of protein phosphatase 2C (PP2C) gene has a distinct genetic architecture of ACGT elements. In the present study, the activation of the full length promoter and its deletion constructs like 900 base pair, 500 base pair, 400 base pair and NRM (Nathji Rajesh Mehrotra) were examined by stable transformation in Arabidopsis thaliana using β-glucuronidase as the reporter gene. Evaluation of deletion constructs of PP2C-like promoter was carried out in the presence of phytohormones like abscisic acid (ABA), SA and JA. Our result indicated that the full length and 900 base pair promoter-reporter constructs of PP2C-like promoter was induced in response to ABA but not to methyl jasmonate and SA. PMID:27200023

  2. Variability of phenotype, anthocyanin indexes, and flavonoids in accessions from a close relative of soybean, Neontonia wightii (Wright & Arn. J.A. Lackey) in the U.S. germplasm collection for potential use as a health forage

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A close relative of soybean, Neonotonia wightii (Wright & Arn. J.A. Lackey), is used as a ruminant feed and restores soil productivity in Brazil and Zimbabwe, respectively. Neonotonia wightii accessions were grown in a greenhouse at Griffin, Georgia, characterized for various phenotypic traits, and...

  3. Molecular characterisation of extended-spectrum β-lactamase- and plasmid AmpC-producing Escherichia coli strains isolated from broilers in Béjaïa, Algeria.

    PubMed

    Belmahdi, Mohamed; Bakour, Sofiane; Al Bayssari, Charbel; Touati, Abdelaziz; Rolain, Jean-Marc

    2016-09-01

    This study aimed to characterise the molecular support of antibiotic resistance in expanded-spectrum cephalosporin (ESC)-resistant Escherichia coli isolates recovered from healthy broilers in Béjaïa, northeast Algeria. A total of 61 intestinal swabs from slaughtered broilers from four regions in Béjaïa locality, Algeria, were collected between February and April 2014, from which 20 ESC-resistant E. coli strains were isolated. Escherichia coli isolates were identified by classical biochemical and MALDI-TOF methods. Antibiotic susceptibility testing was performed using disk diffusion and Etest methods. Screening for β-lactamases, aminoglycoside-modifying enzyme (AME)-encoding genes and qnr determinants was performed by PCR and sequencing. Clonal relatedness was determined using molecular typing by multilocus sequence typing (MLST). Antibiotic susceptibility testing revealed that the isolates showed high rates of resistance (>90%) to amoxicillin, amoxicillin/clavulanic acid, piperacillin/tazobactam, aztreonam, ceftazidime, streptomycin, tobramycin, nalidixic acid and ciprofloxacin. Low rates of resistance were observed for kanamycin (35%), amikacin (30%), cefoxitin (20%) and cefotaxime (15%). Molecular characterisation revealed that all of the isolates expressed the blaTEM-1 gene. Fourteen of them harboured the blaSHV-12 gene, two harboured the blaCTX-M-1 gene and four isolates harboured blaCMY-2. Screening for AME-encoding genes demonstrated that all isolates contained the aadA gene. In addition, qnrA was detected as the quinolone resistance determinant in 13 isolates. MLST revealed four known sequence types (STs), including ST744, ST38, ST1011 and ST2179, as well as one new sequence type (ST5086). Here we report the first study describing the clonal diversity of extended-spectrum β-lactamase (ESBL)- and plasmid AmpC-producing E. coli isolated from healthy broilers in Algeria. PMID:27530851

  4. Time to face the challenge of multimorbidity. A European perspective from the joint action on chronic diseases and promoting healthy ageing across the life cycle (JA-CHRODIS).

    PubMed

    Onder, Graziano; Palmer, Katie; Navickas, Rokas; Jurevičienė, Elena; Mammarella, Federica; Strandzheva, Mirela; Mannucci, Piermannuccio; Pecorelli, Sergio; Marengoni, Alessandra

    2015-04-01

    Research on multimorbidity has rapidly increased in the last decade, but evidence on the effectiveness of interventions to improve outcomes in patients with multimorbidity is limited. The European Commission is co-funding a large collaborative project named Joint Action on Chronic Diseases and Promoting Healthy Ageing across the Life Cycle (JA-CHRODIS) in the context of the 2nd EU Health Programme 2008-2013. The present manuscript summarizes first results of the JA-CHRODIS, focuses on the identification of a population with multimorbidity who has a high or very high care demand. Identification of characteristics of multimorbid patients associated with a high rate of resource consumption and negative health outcomes is necessary to define a target population who can benefit from interventions. Indeed, multimorbidity alone cannot explain the complexity of care needs and further, stratification of the general population based on care needs is necessary for allocating resources and developing personalized, cost-efficient, and patient-centered care plans. Based on analyses of large databases from European countries a profile of the most care-demanding patients with multimorbidity is defined. Several factors associated with adverse health outcomes and resource consumption among patients with multimorbidity were identified in these analyses, including disease patterns, physical function, mental health, and socioeconomic status. These results underline that a global assessment is needed to identify patients with multimorbidity who are at risk of negative health outcomes and that a comprehensive approach, targeting not only diseases, but also social, cognitive, and functional problems should be adopted for these patients.

  5. Re-analysis results using medians of the data from the JaCVAM-organized international validation study of the in vivo rat alkaline comet assay.

    PubMed

    Uno, Yoshifumi; Omori, Takashi

    2015-07-01

    The data from the JaCVAM-organized international validation study of the in vivo rat alkaline comet assay were reported and analyzed statistically using the simple means of % tail DNA. However, OECD test guideline TG 489 recommends use of the median for data analysis due to the hierarchical nature of the data. Comparison between the simple mean approach and the median based approach for positive/negative/equivocal chemical calls was conducted using the % tail DNA data for the 40 chemicals tested in the JaCVAM-organized international validation study of the in vivo rat alkaline comet assay, using liver and stomach as target organs. In the liver, two genotoxic chemicals, o-anisidine and 9-aminoacridine hydrochloride monohydrate, were positive using the median based approach but negative using the simple mean approach, and two genotoxic chemicals, 2-acetylaminofluorene and busulfan were equivocal using the median based approach but negative using the simple mean approach. In contrast, cadmium chloride (genotoxic carcinogen) was equivocal in both organs using the median based approach, while positive and equivocal in liver and stomach, respectively, using the simple mean approach. Two data sets of sodium arsenite showed equivocal and negative results for liver using the median based approach, although both data sets were equivocal using the simple mean approach. Overall, there are no large differences in terms of the genotoxic call between both approaches. However, the median based approach recommended in OECD TG 489 has an advantage toward higher precision within the groups treated with a test chemical, whereas the approach might show the lower values for the effect.

  6. Monitoring of selected priority and emerging contaminants in the Guadalquivir River and other related surface waters in the province of Jaén, South East Spain.

    PubMed

    Robles-Molina, José; Gilbert-López, Bienvenida; García-Reyes, Juan F; Molina-Díaz, Antonio

    2014-05-01

    The province of Jaén counts with four natural parks, numerous rivers, reservoirs and wetlands; moreover, it is probably the region with higher olive oil production in the world, which makes this zone a proper target to be studied based on the European Water Framework Directive 2000/60/CE. The aim of this survey is to monitor a total number of 373 compounds belonging to different families (pesticides, PAHs, nitrosamines, drugs of abuse, pharmaceuticals and life-style compounds) in surface waters located at different points of the province of Jaén. Among these compounds some priority organic substances (regulated by the EU Directive 2008/105/EC) and pollutants of emerging concern (not regulated yet) can be found. A liquid chromatography electrospray time-of-flight mass spectrometry (LC-TOFMS) method covering 340 compounds was developed and applied, together with a gas chromatography triple-quadrupole mass spectrometry (GC-MS/MS) method which enabled the analysis of 63 organic contaminants (30 of these compounds are analyzed by LC-TOFMS as well). From April 2009 to November 2010 a total of 83 surface water samples were collected (rivers, reservoirs and wetlands). In this period numerous organic contaminants were detected, most of them at the ng L(-1) level. The most frequently priority substances found were chlorpyrifos ethyl, diuron and hexachlorobenzene. Within the other groups, the most frequently detected compounds were: terbuthylazine, oxyfluorfen, desethyl terbuthylazine, diphenylamine (pesticide family); fluorene, phenanthrene, pyrene (PAHs group), codeine, paracetamol (pharmaceuticals compounds) and caffeine, nicotine (life-style compounds). As is could be expected, the total concentration of emerging contaminants is distinctly larger than that of priority pollutants, highlighting the importance of continuing with the study of their presence, fate and effects in aquatic environments. However, concentration levels (at the ng per liter level) are low in

  7. Hydrogeological research on intensively exploited deep aquifers in the `Loma de Úbeda' area (Jaén, southern Spain)

    NASA Astrophysics Data System (ADS)

    González-Ramón, Antonio; Rodríguez-Arévalo, Javier; Martos-Rosillo, Sergio; Gollonet, Javier

    2013-06-01

    The intensive use of groundwater for irrigation in the area of Úbeda (`Loma de Úbeda', Jaén, southern Spain) has transformed an area of traditionally rain-fed dry farmland into fields with some of the highest olive oil productivity in the world. Early hydrogeological research studies, initiated just after the beginning of the groundwater exploitation, revealed that the water was collected from three different overlapping aquifers occupying an area of over 1,100 km2, with the lower aquifers located at depths from 300 to over 700 m in an area of 440 km2. Multidisciplinary research, based on geological characterization, and piezometric, hydrochemical and isotopic data, has led to a conceptual model of functioning in this complex hydrogeological system. The proposed model allows for the identification of the recharge areas, and the discharge, which is at present mainly associated with the groundwater pumping. Areas of mixing of waters from the different aquifers and the main hydrogeochemical processes affecting groundwater quality are described.

  8. LOW-TEMPERATURE ION TRAP STUDIES OF N{sup +}({sup 3} P{sub ja} ) + H{sub 2}(j) {yields} NH{sup +} + H

    SciTech Connect

    Zymak, I.; Hejduk, M.; Mulin, D.; Plasil, R.; Glosik, J.; Gerlich, D.

    2013-05-01

    Using a low-temperature 22-pole ion trap apparatus, detailed measurements for the title reaction have been performed between 10 K and 100 K in order to get some state specific information about this fundamental hydrogen abstraction process. The relative population of the two lowest H{sub 2} rotational states, j = 0 and 1, has been varied systematically. NH{sup +} formation is nearly thermo-neutral; however, to date, the energetics are not known with the accuracy required for low-temperature astrochemistry. Additional complications arise from the fact that, so far, there is no reliable theoretical or experimental information on how the reactivity of the N{sup +} ion depends on its fine-structure (FS) state {sup 3} P{sub ja} . Since in the present trapping experiment, thermalization of the initially hot FS population competes with hydrogen abstraction, the evaluation of the decay of N{sup +} ions over long storage times and at various He and H{sub 2} gas densities provides information on these processes. First assuming strict adiabatic behavior, a set of state specific rate coefficients is derived from the measured thermal rate coefficients. In addition, by recording the disappearance of the N{sup +} ions over several orders of magnitude, information on nonadiabatic transitions is extracted including FS-changing collisions.

  9. Physical and Metabolic Interactions of Pseudomonas sp. Strain JA5-B45 and Rhodococcus sp. Strain F9-D79 during Growth on Crude Oil and Effect of a Chemical Surfactant on Them

    PubMed Central

    Van Hamme, Jonathan D.; Ward, Owen P.

    2001-01-01

    Methods to enhance crude oil biodegradation by mixed bacterial cultures, for example, (bio)surfactant addition, are complicated by the diversity of microbial populations within a given culture. The physical and metabolic interactions between Rhodococcus sp. strain F9-D79 and Pseudomonas sp. strain JA5-B45 were examined during growth on Bow River crude oil. The effects of a nonionic chemical surfactant, Igepal CO-630 (nonylphenol ethoxylate), also were evaluated. Strain F9-D79 grew attached to the oil-water interface and produced a mycolic acid-containing capsule. Crude oil emulsification and surface activity were associated with the cellular fraction. Strain JA5-B45 grew in the aqueous phase and was unable to emulsify oil, but cell-free supernatants mediated kerosene-water emulsion formation. In coculture, stable emulsions were formed and strain JA5-B45 had an affinity for the capsule produced by strain F9-D79. Igepal CO-630 inhibited F9-D79 cells from adhering to the interface, and cells grew dispersed in the aqueous phase as 0.5-μm cocci rather than 2.5-μm rods. The surfactant increased total petroleum hydrocarbon removal by strain JA5-B45 from 4 to 22% and included both saturated compounds and aromatics. In coculture, TPH removal increased from 13 to 40% following surfactant addition. The culture pH normally increased from 7.0 to between 7.5 and 8.5, although addition of Igepal CO-630 to F9-D79 cultures resulted in a drop to pH 5.5. We suggest a dual role for the nonylphenol ethoxylate surfactant in the coculture: (i) to improve hydrocarbon uptake by strain JA5-B45 through emulsification and (ii) to prevent strain F9-D79 from adhering to the oil-water interface, indirectly increasing hydrocarbon availability. These varied effects on hydrocarbon biodegradation could explain some of the known diversity of surfactant effects. PMID:11571196

  10. JaCVAM-organized international validation study of the in vivo rodent alkaline comet assay for detection of genotoxic carcinogens: II. Summary of definitive validation study results.

    PubMed

    Uno, Yoshifumi; Kojima, Hajime; Omori, Takashi; Corvi, Raffaella; Honma, Masamistu; Schechtman, Leonard M; Tice, Raymond R; Beevers, Carol; De Boeck, Marlies; Burlinson, Brian; Hobbs, Cheryl A; Kitamoto, Sachiko; Kraynak, Andrew R; McNamee, James; Nakagawa, Yuzuki; Pant, Kamala; Plappert-Helbig, Ulla; Priestley, Catherine; Takasawa, Hironao; Wada, Kunio; Wirnitzer, Uta; Asano, Norihide; Escobar, Patricia A; Lovell, David; Morita, Takeshi; Nakajima, Madoka; Ohno, Yasuo; Hayashi, Makoto

    2015-07-01

    The in vivo rodent alkaline comet assay (comet assay) is used internationally to investigate the in vivo genotoxic potential of test chemicals. This assay, however, has not previously been formally validated. The Japanese Center for the Validation of Alternative Methods (JaCVAM), with the cooperation of the U.S. NTP Interagency Center for the Evaluation of Alternative Toxicological Methods (NICEATM)/the Interagency Coordinating Committee on the Validation of Alternative Methods (ICCVAM), the European Centre for the Validation of Alternative Methods (ECVAM), and the Japanese Environmental Mutagen Society/Mammalian Mutagenesis Study Group (JEMS/MMS), organized an international validation study to evaluate the reliability and relevance of the assay for identifying genotoxic carcinogens, using liver and stomach as target organs. The ultimate goal of this exercise was to establish an Organisation for Economic Co-operation and Development (OECD) test guideline. The study protocol was optimized in the pre-validation studies, and then the definitive (4th phase) validation study was conducted in two steps. In the 1st step, assay reproducibility was confirmed among laboratories using four coded reference chemicals and the positive control ethyl methanesulfonate. In the 2nd step, the predictive capability was investigated using 40 coded chemicals with known genotoxic and carcinogenic activity (i.e., genotoxic carcinogens, genotoxic non-carcinogens, non-genotoxic carcinogens, and non-genotoxic non-carcinogens). Based on the results obtained, the in vivo comet assay is concluded to be highly capable of identifying genotoxic chemicals and therefore can serve as a reliable predictor of rodent carcinogenicity.

  11. New RTM/RI Resins for the HSCT

    NASA Technical Reports Server (NTRS)

    Harris, Frank W.

    1999-01-01

    In the first portion of this work, 1,2,3,3,4,4-hexafluoro-1,2-bis[4-(dimethylhydroxysilyl)phenoxy]cyclobutane and 1,2,3,3,4,4-hexafluoro-1,2-bis[3-(dimethylhydroxysilyl)phenoxy]cyclobutane were prepared and homopolymerized to afford polymers with excellent thermal stability and Tgs of 27 C and -12 C, respectively. Despite the moderately high wt% of fluorin in the polymer structure (23.8%), these polymers had poor fuel resistance. In fact, swelling measurements indicate that these polymers had apparent solubility parameters of about 18.2 J (exp 1/2) m (exp -3/2) (toluene). Copolymerization of the disilanol monomers with fluorosilicone monomers afforded copolymers containing 20-30 wt% of the perfluorocyclobutane-containing structure displayed adequate fuel resistance, enhanced thermal stability, and a Tg low enough to meet the requirements of a High Speed Civil Transport (HSCT) fuel tank sealant. In the second part of this work, trifluorovinylether-terminated oligomers were prepared and polymerized via cyclodimerization. Initially, an alpha, omega-silanol-terminated fluorosilicone was endcapped with trifluorovinylether end groups via a two-step synthetic sequence. The oligomer was thermally cyclodimerized to a polymer that displayed thermal stability similar to that of a fluorosilicone homopolymer. Second, 1,3-bis[4-trifluorovinyl(oxy)phenyl]-1,3-(3,3,3-trifluoropropyl)dimethyldisiloxane and 1,3-bis{3-trifluorovinyl(oxy)phenyl]-1,3-(3,3,3-trifluoropropyl)dimethyldisiloxane were prepared and cyclodimerized to afford polymers that contained pendant trifluoropropyl groups. The pendant trifluoropropyl groups did enhance solvent resistance in aliphatic hydrocarbon solvents, however, no improvement was observed in aromatic hydrocarbon solvents. These polymers also displayed excellent thermal stability. In the last part of this work, a series of monomers was prepared by the DCC-promoted esterification of 4-[trifluorovinyl(oxy)benzoic acid with alpha, omega-functionalized hydrogenated and partially fluorinated alcohols. The monomers were cyclodimerized to the corresponding polymers. The polymers that did not contain beta hydrogens displayed significantly higher thermal stability than the fully hydrogenated polymers. A commercially-available alpha,omega-hydroxy-terminated perfluoropolyether was then functionalized with 4-[trifluorovinyl(oxy)benzoylchloride. An attempt was made to polymerize the resulting oligomer via the cyclodimerization of the terminal trifluorovinylether moieties. Although the viscosity of the oligomer increased significantly during polymerization, Gel Permeation Chromatography (GPC) analysis revealed that the Tetrahydrofuran (THF) soluble portion of the polymer did not have high molecular weight.

  12. 33 CFR 334.80 - Narragansett Bay, RI; restricted area.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... southeasterly to latitude 41°32′44″, longitude 71°21′17″; thence southerly to latitude 41°32′09″, longitude 71°21′17″; thence southeasterly to latitude 41°31′50″, longitude 71°21′10″; thence southeasterly to latitude 41°31′26″, longitude 71°20′33″ thence easterly to latitude 41°31′27″, longitude 71°20′06″...

  13. 33 CFR 334.80 - Narragansett Bay, RI; restricted area.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... southeasterly to latitude 41°32′44″, longitude 71°21′17″; thence southerly to latitude 41°32′09″, longitude 71°21′17″; thence southeasterly to latitude 41°31′50″, longitude 71°21′10″; thence southeasterly to latitude 41°31′26″, longitude 71°20′33″ thence easterly to latitude 41°31′27″, longitude 71°20′06″...

  14. 33 CFR 334.80 - Narragansett Bay, RI; restricted area.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... southeasterly to latitude 41°32′44″, longitude 71°21′17″; thence southerly to latitude 41°32′09″, longitude 71°21′17″; thence southeasterly to latitude 41°31′50″, longitude 71°21′10″; thence southeasterly to latitude 41°31′26″, longitude 71°20′33″ thence easterly to latitude 41°31′27″, longitude 71°20′06″...

  15. 33 CFR 334.80 - Narragansett Bay, RI; restricted area.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... southeasterly to latitude 41°32′44″, longitude 71°21′17″; thence southerly to latitude 41°32′09″, longitude 71°21′17″; thence southeasterly to latitude 41°31′50″, longitude 71°21′10″; thence southeasterly to latitude 41°31′26″, longitude 71°20′33″ thence easterly to latitude 41°31′27″, longitude 71°20′06″...

  16. SIZE, STRUCTURE AND FUNCTIONALITY IN SHALLOW COVE COMMUNITIES IN RI

    EPA Science Inventory

    We are using an ecosystem approach to examine the ecological integrity and important habitats in small estuarine coves. We sampled the small undeveloped Coggeshall Cove during the sununer of 1999. The cove was sampled at high tide at every 15 cm of substrate elevation along trans...

  17. 33 CFR 110.145 - Narragansett Bay, R.I.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... List of CFR Sections Affected, which appears in the Finding Aids section of the printed volume and on... range lights, or for not complying with the navigation laws in regard to lights, fog signals, or...

  18. 33 CFR 110.145 - Narragansett Bay, R.I.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... List of CFR Sections Affected, which appears in the Finding Aids section of the printed volume and at... range lights, or for not complying with the navigation laws in regard to lights, fog signals, or...

  19. Comparative genomic analysis of single-molecule sequencing and hybrid approaches for finishing the Clostridium autoethanogenum JA1-1 strain DSM 10061 genome

    SciTech Connect

    Brown, Steven D; Nagaraju, Shilpa; Utturkar, Sagar M; De Tissera, Sashini; Segovia, Simón; Mitchell, Wayne; Land, Miriam L; Dassanayake, Asela; Köpke, Michael

    2014-01-01

    Background Clostridium autoethanogenum strain JA1-1 (DSM 10061) is an acetogen capable of fermenting CO, CO2 and H2 (e.g. from syngas or waste gases) into biofuel ethanol and commodity chemicals such as 2,3-butanediol. A draft genome sequence consisting of 100 contigs has been published. Results A closed, high-quality genome sequence for C. autoethanogenum DSM10061 was generated using only the latest single-molecule DNA sequencing technology and without the need for manual finishing. It is assigned to the most complex genome classification based upon genome features such as repeats, prophage, nine copies of the rRNA gene operons. It has a low G + C content of 31.1%. Illumina, 454, Illumina/454 hybrid assemblies were generated and then compared to the draft and PacBio assemblies using summary statistics, CGAL, QUAST and REAPR bioinformatics tools and comparative genomic approaches. Assemblies based upon shorter read DNA technologies were confounded by the large number repeats and their size, which in the case of the rRNA gene operons were ~5 kb. CRISPR (Clustered Regularly Interspaced Short Paloindromic Repeats) systems among biotechnologically relevant Clostridia were classified and related to plasmid content and prophages. Potential associations between plasmid content and CRISPR systems may have implications for historical industrial scale Acetone-Butanol-Ethanol (ABE) fermentation failures and future large scale bacterial fermentations. While C. autoethanogenum contains an active CRISPR system, no such system is present in the closely related Clostridium ljungdahlii DSM 13528. A common prophage inserted into the Arg-tRNA shared between the strains suggests a common ancestor. However, C. ljungdahlii contains several additional putative prophages and it has more than double the amount of prophage DNA compared to C. autoethanogenum. Other differences include important metabolic genes for central metabolism (as an additional hydrogenase and the absence of a

  20. 77 FR 33007 - Submission for Review: Rollover Election (RI 38-117), Rollover Information (RI 38-118), and...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-04

    ... obtained by contacting the Retirement Services Publications Team, Office of Personnel Management, 1900 E... Notice and request for comments. SUMMARY: The Retirement Services, Office of Personnel Management (OPM... assumptions used; 3. Enhance the quality, utility, and clarity of the information to be collected; and...

  1. 75 FR 15343 - Regulated Navigation Area: Narragansett Bay, RI and Mount Hope Bay, RI and MA, Including the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-29

    ... Register notice and request for comments at 70 FR 70052, under the heading ``Navigation and Waterways.... On May 26, 2006, we published a Federal Register notice of proposed rulemaking at 71 FR 30108, under... Register at 71 FR 57893, under the heading ``Navigation and Waterways Management Improvements,...

  2. 77 FR 66187 - Submission for Review: Rollover Election (RI 38-117), Rollover Information (RI 38-118), and...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-02

    ... Clinger-Cohen Act (Pub. L. 104-106), OPM is soliciting comments for this collection. This information collection was previously published in the Federal Register on June 4, 2012 at volume 77 FR 33007...

  3. Buckwheat (Fagopyrum esculentum M.) sprout treated with methyl jasmonate (MeJA) improved anti-adipogenic activity associated with the oxidative stress system in 3T3-L1 adipocytes.

    PubMed

    Lee, Young-Jun; Kim, Kui-Jin; Park, Kee-Jai; Yoon, Bo-Ra; Lim, Jeong-Ho; Lee, Ok-Hwan

    2013-01-11

    Buckwheat sprouts contain various bioactive compounds including rutin which have a number of biological activities. We have previously shown that buckwheat sprouts (TBWE) treated with methyl jasmonate (MeJA) significantly increased the amount of phenolics and the antioxidant activity. The aim of this study was to demonstrate the effect of TBWE on anti-adipogenesis and pro-oxidant enzyme in 3T3-L1 adipocytes. We also evaluated the anti-oxidative activity of TBWE in adipocytes by using the nitroblue tetrazolium assay. Our data showed that TBWE markedly inhibited adipocyte differentiation and ROS production in 3T3-L1 cells compared with control groups. Moreover, TBWE has strongly shown the inhibition of adipogenic transcription factor as well as pro-oxidant enzymes. Together, we demonstrate that the MeJA treatment significantly increased the amount of phenolic compound, resulting in the suppression of adipogenesis and ROS production in the 3T3-L1 cells. These findings indicate that TBWE has the potential for anti-adipogenesis activity with anti-oxidative properties.

  4. Evaluation of methyl methanesulfonate, 2,6-diaminotoluene and 5-fluorouracil: Part of the Japanese center for the validation of alternative methods (JaCVAM) international validation study of the in vivo rat alkaline comet assay.

    PubMed

    Plappert-Helbig, Ulla; Junker-Walker, Ursula; Martus, Hans-Joerg

    2015-07-01

    As a part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiative international validation study of the in vivo rat alkaline comet assay (comet assay), we examined methyl methanesulfonate, 2,6-diaminotoluene, and 5-fluorouracil under coded test conditions. Rats were treated orally with the maximum tolerated dose (MTD) and two additional descending doses of the respective compounds. In the MMS treated groups liver and stomach showed significantly elevated DNA damage at each dose level and a significant dose-response relationship. 2,6-diaminotoluene induced significantly elevated DNA damage in the liver at each dose and a statistically significant dose-response relationship whereas no DNA damage was obtained in the stomach. 5-fluorouracil did not induce DNA damage in either liver or stomach.

  5. Use of a standardized JaCVAM in vivo rat comet assay protocol to assess the genotoxicity of three coded test compounds; ampicillin trihydrate, 1,2-dimethylhydrazine dihydrochloride, and N-nitrosodimethylamine.

    PubMed

    McNamee, J P; Bellier, P V

    2015-07-01

    As part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiative international validation study of the in vivo rat alkaline comet assay (comet assay), our laboratory examined ampicillin trihydrate (AMP), 1,2-dimethylhydrazine dihydrochloride (DMH), and N-nitrosodimethylamine (NDA) using a standard comet assay validation protocol (v14.2) developed by the JaCVAM validation management team (VMT). Coded samples were received by our laboratory along with basic MSDS information. Solubility analysis and range-finding experiments of the coded test compounds were conducted for dose selection. Animal dosing schedules, the comet assay processing and analysis, and statistical analysis were conducted in accordance with the standard protocol. Based upon our blinded evaluation, AMP was not found to exhibit evidence of genotoxicity in either the rat liver or stomach. However, both NDA and DMH were observed to cause a significant increase in % tail DNA in the rat liver at all dose levels tested. While acute hepatoxicity was observed for these compounds in the high dose group, in the investigators opinion there were a sufficient number of consistently damaged/measurable cells at the medium and low dose groups to judge these compounds as genotoxic. There was no evidence of genotoxicity from either NDA or DMH in the rat stomach. In conclusion, our laboratory observed increased DNA damage from two blinded test compounds in rat liver (later identified as genotoxic carcinogens), while no evidence of genotoxicity was observed for the third blinded test compound (later identified as a non-genotoxic, non-carcinogen). This data supports the use of a standardized protocol of the in vivo comet assay as a cost-effective alternative genotoxicity assay for regulatory testing purposes. PMID:26212307

  6. Use of a standardized JaCVAM in vivo rat comet assay protocol to assess the genotoxicity of three coded test compounds; ampicillin trihydrate, 1,2-dimethylhydrazine dihydrochloride, and N-nitrosodimethylamine.

    PubMed

    McNamee, J P; Bellier, P V

    2015-07-01

    As part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiative international validation study of the in vivo rat alkaline comet assay (comet assay), our laboratory examined ampicillin trihydrate (AMP), 1,2-dimethylhydrazine dihydrochloride (DMH), and N-nitrosodimethylamine (NDA) using a standard comet assay validation protocol (v14.2) developed by the JaCVAM validation management team (VMT). Coded samples were received by our laboratory along with basic MSDS information. Solubility analysis and range-finding experiments of the coded test compounds were conducted for dose selection. Animal dosing schedules, the comet assay processing and analysis, and statistical analysis were conducted in accordance with the standard protocol. Based upon our blinded evaluation, AMP was not found to exhibit evidence of genotoxicity in either the rat liver or stomach. However, both NDA and DMH were observed to cause a significant increase in % tail DNA in the rat liver at all dose levels tested. While acute hepatoxicity was observed for these compounds in the high dose group, in the investigators opinion there were a sufficient number of consistently damaged/measurable cells at the medium and low dose groups to judge these compounds as genotoxic. There was no evidence of genotoxicity from either NDA or DMH in the rat stomach. In conclusion, our laboratory observed increased DNA damage from two blinded test compounds in rat liver (later identified as genotoxic carcinogens), while no evidence of genotoxicity was observed for the third blinded test compound (later identified as a non-genotoxic, non-carcinogen). This data supports the use of a standardized protocol of the in vivo comet assay as a cost-effective alternative genotoxicity assay for regulatory testing purposes.

  7. Carbon and Oxygen Isotope Stratigraphy of the Ediacaran Jaíba Formation, Upper Bambuí Group, Brazil: Insights into Paleogeography and Sedimentary Environments after a Neoproterozoic Glaciation.

    NASA Astrophysics Data System (ADS)

    Caxito, F.; Uhlein, G. J.; Sial, A. N.; Uhlein, A.

    2015-12-01

    The Neoproterozoic Era was a time of extreme climatic variation as recorded in sedimentary rocks of this age across the globe, leading to a number of controversial hypotheses (e.g. the Snowball Earth glaciations). In eastern Brazil, the Bambuí Gr. is a thick carbonatic-siliciclastic unit that covers the São Francisco Craton and preserves remnants of a Neoproterozoic glaciation and their respective cap carbonate (1). Recent findings of Cloudina in the Januária region (2) suggest that at least part of the sequence might be upper Ediacaran or even Cambrian. Here we present the first carbon-oxygen isotope data for the Jaíba Fm., a ca. 50 m thick carbonate unit that occurs in the topmost portion of the Bambuí Gr. in this same region. The Jaíba Fm. post-dates the cap carbonate sequence and the fossil-bearing layers, and thus was probably deposited in the Ediacaran-Cambrian transition. Three stratigraphic columns were analyzed, and yielded similar ratios. Values of δ13CVPDB are between 0.8 and 3.4 ‰, while δ18OVPDB values are mostly around -8 ‰. These values contrasts with the negative δ13C values found for the base of the Bambuí Gr., followed by highly positive δ13C (up to +14‰) on its middle portion. The unusually high δ13C values are commonly interpreted as evidence for deposition on a restricted basin, such as in a foreland setting. The return to values which are close to the PDB standard in the uppermost Bambuí Gr. might thus indicate a change in the paleogeography and tectonic environment of the basin, suggesting an open, ventilated environment along with a recovery of the biological and hydrological cycle after a Late Neoproterozoic glaciation. Ongoing detailed sedimentological, geochemical and isotopic work might help to further clarify these issues and to provide new clues for unraveling Late Neoproterozoic paleoclimate, paleogeography and ocean chemistry. We thank FAPEMIG (Brazil) for finnacial support through grants n. APQ-00914-14 and PPM

  8. JaCVAM-organized international validation study of the in vivo rodent alkaline comet assay for the detection of genotoxic carcinogens: I. Summary of pre-validation study results.

    PubMed

    Uno, Yoshifumi; Kojima, Hajime; Omori, Takashi; Corvi, Raffaella; Honma, Masamistu; Schechtman, Leonard M; Tice, Raymond R; Burlinson, Brian; Escobar, Patricia A; Kraynak, Andrew R; Nakagawa, Yuzuki; Nakajima, Madoka; Pant, Kamala; Asano, Norihide; Lovell, David; Morita, Takeshi; Ohno, Yasuo; Hayashi, Makoto

    2015-07-01

    The in vivo rodent alkaline comet assay (comet assay) is used internationally to investigate the in vivo genotoxic potential of test chemicals. This assay, however, has not previously been formally validated. The Japanese Center for the Validation of Alternative Methods (JaCVAM), with the cooperation of the U.S. NTP Interagency Center for the Evaluation of Alternative Toxicological Methods (NICEATM)/the Interagency Coordinating Committee on the Validation of Alternative Methods (ICCVAM), the European Centre for the Validation of Alternative Methods (ECVAM), and the Japanese Environmental Mutagen Society/Mammalian Mutagenesis Study Group (JEMS/MMS), organized an international validation study to evaluate the reliability and relevance of the assay for identifying genotoxic carcinogens, using liver and stomach as target organs. The ultimate goal of this validation effort was to establish an Organisation for Economic Co-operation and Development (OECD) test guideline. The purpose of the pre-validation studies (i.e., Phase 1 through 3), conducted in four or five laboratories with extensive comet assay experience, was to optimize the protocol to be used during the definitive validation study. PMID:26212293

  9. Evaluation of 4,4'-diaminodiphenyl ether in the rat comet assay: Part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiative international validation study of in vivo rat alkaline comet assay.

    PubMed

    Priestley, Catherine C; Walker, Joanne S; O'Donovan, Michael R; Doherty, Ann T

    2015-07-01

    As a part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiative international validation study of the in vivo rat alkaline comet assay, 4,4'-diaminodiphenyl ether (DPE), a known rodent genotoxic carcinogen, was tested in this laboratory. Sprague Dawley rats (7-9 weeks of age) were given three oral doses of DPE, 24 and 21 h apart and liver or stomach sampled 3h after the final dose. Under the conditions of the test, no increases in DNA damage in liver and stomach were observed with DPE (up to 200 mg/kg/day). A dose-dependent decrease in DNA migration, compared to vehicle controls, was noted for DPE in rat stomach. Further analysis is required to elucidate fully whether this decrease is a consequence of the mode of action or due to the toxicity of DPE. What is perhaps surprising is the inability of the comet assay to detect a known rat genotoxic carcinogen in liver. Further investigation is needed to clarify whether this apparent lack of response results from limited tissue exposure or metabolic differences between species. This finding highlights a need for careful consideration of study design when evaluating assay performance as a measure of in vivo genotoxicity.

  10. JaCVAM-organized international validation study of the in vivo rodent alkaline comet assay for the detection of genotoxic carcinogens: I. Summary of pre-validation study results.

    PubMed

    Uno, Yoshifumi; Kojima, Hajime; Omori, Takashi; Corvi, Raffaella; Honma, Masamistu; Schechtman, Leonard M; Tice, Raymond R; Burlinson, Brian; Escobar, Patricia A; Kraynak, Andrew R; Nakagawa, Yuzuki; Nakajima, Madoka; Pant, Kamala; Asano, Norihide; Lovell, David; Morita, Takeshi; Ohno, Yasuo; Hayashi, Makoto

    2015-07-01

    The in vivo rodent alkaline comet assay (comet assay) is used internationally to investigate the in vivo genotoxic potential of test chemicals. This assay, however, has not previously been formally validated. The Japanese Center for the Validation of Alternative Methods (JaCVAM), with the cooperation of the U.S. NTP Interagency Center for the Evaluation of Alternative Toxicological Methods (NICEATM)/the Interagency Coordinating Committee on the Validation of Alternative Methods (ICCVAM), the European Centre for the Validation of Alternative Methods (ECVAM), and the Japanese Environmental Mutagen Society/Mammalian Mutagenesis Study Group (JEMS/MMS), organized an international validation study to evaluate the reliability and relevance of the assay for identifying genotoxic carcinogens, using liver and stomach as target organs. The ultimate goal of this validation effort was to establish an Organisation for Economic Co-operation and Development (OECD) test guideline. The purpose of the pre-validation studies (i.e., Phase 1 through 3), conducted in four or five laboratories with extensive comet assay experience, was to optimize the protocol to be used during the definitive validation study.

  11. Regulative influence of o-aminobenzoic acid on the biosynthesis of nourseothricin in cultures of Streptomyces noursei JA 3890b. IV. Bistability of metabolism and the mechanism of action of aminobenzoic acids.

    PubMed

    Gräfe, U; Bocker, H; Thrum, H

    1979-01-01

    Using the semi-continuous cultivation technique we could establish that specifically in Streptomyces noursei JA 3890b during growth on a medium supplied with D,L-alanine, NH4+, and maize starch there are two different phenotypes of the organism and stationary states of metabolism, respectively. The expression of either the metabolic state I with an enhanced capacity to oxidative deamination of alanine via the NAD+-dependent alanaine dehydrogenase or the metabolic state 2 which may be characterized by the preferred use of ammonium ions via the NADP+-dependent glutamate dehydrogenase was shown to depend strongly on the conditions of inoculum cultivation. When the amino acid permeases were derepressed by cultivating the inoculum cells on amino acid media, probably due to the defective mechanism of negative feedback control of amino acid influx in this strain an abnormously high uptake of alanine was observed that, consequently, was correlated to the enhanced oxidation of this amino acid as well as to the intensive production of ammonia within the cell. This overproduction of cellular NH4+ seems to bring about the subsequent repression of biosynthetic glutamate dehydrogenase and so on the accumulation of ammonia autocatalytically may rise up (metabolic state I). On the other hand, if the influx of alanine was kept low and the NADH oxidation was less efficient, respectively, or when there was high cellular activity of glutamate dehydrogenase the level of ammonia never did exceed the respressory limit and, accordingly, the expression of the metabolic state 2 was observed. Switching-over of metabolic flux from the state 2 towards the state 1 can be brought about either by increasing the level of nitrogen sources in the medium or by adding buffers pH greater than 7.5. In contrast, decrease of cellular level of NH4+ was shown to induce the transition of metabolic state 1 into the state 2. This can be achieved not only by limitation of nitrogen source but also by adding

  12. Personnel Management: A J/A Perspective

    ERIC Educational Resources Information Center

    Tasca, A. J.

    1974-01-01

    Recently, personnel executives and their staffs are being asked to help management solve an increasing number of human resource and business problems. Personnel management must undergo some changes if it is to achieve its full potential. (Author/AJ)

  13. Design of Current Source Dc/Dc Converter for Interfacing a 5 Kw Pem Fuel Cell / Paaugstinošā Strāvas Avota Līdzsprieguma Pārveidotāja Izstrāde 5 Kw Ūdeņraža Degvielas Elementam

    NASA Astrophysics Data System (ADS)

    Andreičiks, A.; Steiks, I.; Krievs, O.

    2013-08-01

    In domestic applications the low DC output voltage of a hydrogen fuel cell used as the main power supply or a backup power source has to be matched to the level and frequency of the AC voltage of utility grid. The interfacing power converter system usually consists of a DC/DC converter and an inverter. In this work, a DC/DC step-up converter stage is designed for interfacing a 5kW proton exchange membrane (PEM) fuel cell. The losses of DC/DC conversion are estimated and, basing on the relevant analysis, the most appropriate configuration of converter modules is selected for a DC/DC converter stage of increased efficiency. The authors present the results of experimental analysis and simulation for the selected configuration of four double inductor step-up push-pull converter modules Ūdeņraža degvielas elementa invertoru sistēmas mājsaimniecības pielietojumiem parasti sastāv no līdzsprieguma paaugstināšanas un invertēšanas mezgliem. Šis raksts ir veltīts paaugstinošā līdzsprieguma pārveidotāja izstrādei 5 kW protonu apmaiņas membrānas degvielas elementam. Rakstā izpētīts divu induktoru divtaktu strāvas avota paaugstinošais līdzsprieguma pārveidotājs, aplūkojot gan datormodelēšanas, gan eksperimentālos rezultātus. Lai palielinātu DC/DC pārveidotāja efektivitāti var izmantot vairākus pārveidotāja moduļus, kam ieejas savienotas paralēli un izejās - virkne. Analīze Šajā raksta ir veikta analīze, balstoties uz kuras var izvēlieties skaitu pārveidotāj moduļu skaitu, kuri nodrošina vislabāko efektivitāti DC/DC pārveidotāja posmā. Kopējais eksperimentāli noteiktais izstrādātās degvielas elementa pārveidotāju sistēmas fizikālā modeļa lietderības koeficients ir 93%

  14. Evaluation of p-phenylenediamine, o-phenylphenol sodium salt, and 2,4-diaminotoluene in the rat comet assay as part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiated international validation study of in vivo rat alkaline comet assay.

    PubMed

    De Boeck, Marlies; van der Leede, Bas-jan; De Vlieger, Kathleen; Geys, Helena; Vynckier, An; Van Gompel, Jacky

    2015-07-01

    As part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiated international validation study of in vivo rat alkaline comet assay (comet assay), p-phenylenediamine dihydrochloride (PPD), o-phenylphenol sodium salt (OPP), and 2,4-diaminotoluene (2,4-DAT), were analyzed in this laboratory as coded test chemicals. Male Sprague-Dawley rats (7-9 weeks of age) were given three oral doses of the test compounds, 24 and 21 h apart and liver and stomach were sampled 3h after the final dose administration. Under the conditions of the test, no increases in DNA damage were observed in liver and stomach with PPD and OPP up to 100 and 1000 mg/kg/day, respectively. 2,4-DAT, a known genotoxic carcinogen, induced a weak but reproducible, dose-related and statistically significant increase in DNA damage in liver cells while no increases were observed in stomach cells.

  15. 33 CFR 80.155 - Watch Hill, RI to Montauk Point, NY.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... Plum Island. (c) A line drawn from Plum Island Harbor East Dolphin Light to Plum Island Harbor West Dolphin Light. (d) A line drawn from Plum Island Light to Orient Point Light; thence to Orient Point....

  16. 33 CFR 80.155 - Watch Hill, RI to Montauk Point, NY.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... Plum Island. (c) A line drawn from Plum Island Harbor East Dolphin Light to Plum Island Harbor West Dolphin Light. (d) A line drawn from Plum Island Light to Orient Point Light; thence to Orient Point....

  17. 33 CFR 110.46 - Newport Harbor, Newport, R.I.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... beginning. (b) Area No. 2. The waters east of Goat Island beginning at a point bearing 090°, 245 yards from Goat Island Shoal Light; thence 007°, 505 yards; thence 054°, 90 yards; thence 086°, 330 yards; thence... beginning. (c) Area No. 3. The waters north of Goat Island Causeway Bridge beginning at Newport Harbor...

  18. 33 CFR 110.46 - Newport Harbor, Newport, R.I.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... beginning. (b) Area No. 2. The waters east of Goat Island beginning at a point bearing 090°, 245 yards from Goat Island Shoal Light; thence 007°, 505 yards; thence 054°, 90 yards; thence 086°, 330 yards; thence... beginning. (c) Area No. 3. The waters north of Goat Island Causeway Bridge beginning at Newport Harbor...

  19. 33 CFR 110.46 - Newport Harbor, Newport, R.I.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... beginning. (b) Area No. 2. The waters east of Goat Island beginning at a point bearing 090°, 245 yards from Goat Island Shoal Light; thence 007°, 505 yards; thence 054°, 90 yards; thence 086°, 330 yards; thence... beginning. (c) Area No. 3. The waters north of Goat Island Causeway Bridge beginning at Newport Harbor...

  20. 33 CFR 110.46 - Newport Harbor, Newport, R.I.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... beginning. (b) Area No. 2. The waters east of Goat Island beginning at a point bearing 090°, 245 yards from Goat Island Shoal Light; thence 007°, 505 yards; thence 054°, 90 yards; thence 086°, 330 yards; thence... beginning. (c) Area No. 3. The waters north of Goat Island Causeway Bridge beginning at Newport Harbor...

  1. 33 CFR 110.46 - Newport Harbor, Newport, R.I.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... beginning. (b) Area No. 2. The waters east of Goat Island beginning at a point bearing 090°, 245 yards from Goat Island Shoal Light; thence 007°, 505 yards; thence 054°, 90 yards; thence 086°, 330 yards; thence... beginning. (c) Area No. 3. The waters north of Goat Island Causeway Bridge beginning at Newport Harbor...

  2. ENVIRONMENTAL RESTORATION AND PROTECTION STRATEGIES AT MULTIPLE SCALES IN RI WATERSHEDS

    EPA Science Inventory

    EP A New England, in cooperation with New England states, natural resource specialists, and stakeholders has adopted an approach to help identify areas of healthy natural resources. Rather than focusing on remediation options for areas that are not sustaining aquatic life or huma...

  3. 33 CFR 80.155 - Watch Hill, RI to Montauk Point, NY.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... Plum Island. (c) A line drawn from Plum Island Harbor East Dolphin Light to Plum Island Harbor West Dolphin Light. (d) A line drawn from Plum Island Light to Orient Point Light; thence to Orient Point....

  4. 76 FR 61135 - Environmental Impact Statement: Theodore Francis Green Airport, Warwick, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-03

    ... Post Rd, Warwick, Rhode Island, and at public libraries in Warwick and Cranston, Rhode Island. Issued... FAA is issuing this notice to advise the public that a Record of Decision (ROD), resulting from...

  5. 76 FR 34108 - Submission for Review: Alternative Annuity Election (RI 20-80)

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-10

    ... Director, Retirement Operations, Retirement Services, 1900 E Street, NW., Room 3305, Washington, DC 20415... Services Publications Team. Office of Personnel Management, 1900 E Street, NW., Room 4332, Washington, DC... Management. ACTION: 60-Day Notice and request for comments. SUMMARY: The Retirement Services, Office...

  6. 76 FR 82000 - Submission for Review: Marital Status Certification Survey, RI 25-7

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-29

    ... Personnel Management. ACTION: 30-Day Notice and request for comments. SUMMARY: The Retirement Services... Volume 76 FR 39927 allowing for a 60-day public comment period. No comments were received for this... and assumptions used; 3. Enhance the quality, utility, and clarity of the information to be...

  7. 76 FR 15350 - Submission for Review: Representative Payee Survey, RI 38-115

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-21

    ... Director, Retirement Operations, Retirement Services, 1900 E Street, NW., Room 3305, Washington, ] DC 20415... Management. ACTION: 60-Day Notice and request for comments. SUMMARY: The Retirement Services, Office of... assumptions used; 3. Enhance the quality, utility, and clarity of the information to be collected; and...

  8. Dietary Sugars Analysis: Quantification of Fructooligossacharides during Fermentation by HPLC-RI Method

    PubMed Central

    Correia, Daniela M.; Dias, Luís G.; Veloso, Ana C. A.; Dias, Teresa; Rocha, Isabel; Rodrigues, Lígia R.; Peres, António M.

    2014-01-01

    In this work, a simple chromatographic method is proposed and in-house validated for the quantification of total and individual fructooligossacharides (e.g., 1-kestose, nystose, and 1F-fructofuranosylnystose). It was shown that a high-performance liquid chromatography with refractive index detector could be used to monitor the dynamic of fructooligossacharides production via sucrose fermentation using Aspergillus aculeatus. This analytical technique may be easily implemented at laboratorial or industrial scale for fructooligossacharides mass-production monitoring allowing also controlling the main substrate (sucrose) and the secondary by-products (glucose and fructose). The proposed chromatographic method had a satisfactory intra- and inter-day variability (in general, with a relative standard deviation lower than 5%), high sensitivity for each sugar (usually, with a relative error lower than 5%), and low detection (lower than 0.06 ± 0.04 g/L) and quantification (lower than 0.2 ± 0.1 g/L) limits. The correct quantification of fructooligossacharides in fermentative media may allow a more precise nutritional formulation of new functional foods, since it is reported that different fructooligossacharides exhibit different biological activities and effects. PMID:25988114

  9. Low-energy nuclear reaction studies with RI beams in nuclear astrophysics

    NASA Astrophysics Data System (ADS)

    Kubono, S.; Teranishi, T.; Kato, S.

    2003-07-01

    After a brief discussion on the recent development in nuclear astrophysics, two reaction studies of typical astrophysical reactions at low energies where nuclear reactions play the main contributions to the nucleosynthesis in the universe, are discussed. One is the proton capture reaction, 11C(p, γ)12N, studied by the direct method using a 11C beam produced with a new low-energy RIB separator CRIB at CNS, Japan. The second one is the 13C(α, n)16O rearrangement reaction, which is believed to be the main neutron source for the s-process at low temperatures, investigated by an indirect method using the direct α-transfer reaction 13C(6Li, d)17O. Detailed investigations are suggested on the nuclear reactions relevant.

  10. 33 CFR 80.155 - Watch Hill, RI to Montauk Point, NY.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... Plum Island. (c) A line drawn from Plum Island Harbor East Dolphin Light to Plum Island Harbor West Dolphin Light. (d) A line drawn from Plum Island Light to Orient Point Light; thence to Orient Point....

  11. 33 CFR 80.155 - Watch Hill, RI to Montauk Point, NY.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... Plum Island. (c) A line drawn from Plum Island Harbor East Dolphin Light to Plum Island Harbor West Dolphin Light. (d) A line drawn from Plum Island Light to Orient Point Light; thence to Orient Point....

  12. Identifizierung der Nitratabbauprozesse und Prognose des Nitratabbaupotenzials in den Sedimenten des Hessischen Rieds

    NASA Astrophysics Data System (ADS)

    Kludt, Christoph; Weber, Frank-Andreas; Bergmann, Axel; Knöller, Kay; Berthold, Georg; Schüth, Christoph

    2016-03-01

    Microbial denitrification contributes significantly to the mitigation of nitrate contamination in sedimentary aquifers by reducing nitrate coupled to the consumption of organic carbon (heterotrophic) and iron sulphides like pyrite (autotrophic). However, these phases are often only present in trace amounts and can become depleted, so that denitrification will eventually cease. In order to implement measures within the EC-Water Framework Directive, we investigated the denitrification potential and the denitrification processes in the sediments of the Hessian Ried. The reduction potential was quantified and characterized by solid-phase analyses of drill core samples. Depth-oriented investigations of hydrochemistry (i.e. stable isotopes, N2Excess) allowed determining nitrate input, reduction progress and average reduction kinetics upstream of selected wells. Despite low sulphide contents (max. 123 mg-S/kg), autotrophic denitrification was typically the dominant process. The results can be used to delineate risk areas, downstream of which denitrification can be expected to cease in the near future.

  13. AN EMPIRICAL UBV RI JHK COLOR-TEMPERATURE CALIBRATION FOR STARS

    SciTech Connect

    Worthey, Guy; Lee, Hyun-chul

    2011-03-15

    A collection of Johnson/Cousins photometry for stars with known [Fe/H] is used to generate color-color relations that include the abundance dependence. Literature temperature and bolometric correction (BC) dependences are attached to the color relations. The JHK colors are transformed to the Bessell and Brett homogenized system. The main result of this work is the tabulation of seven colors and the V-band BC as a function of T {sub eff}, log g, and [Fe/H] for -1.06 < V - K < 10.2 and an accompanying interpolation program. Improvements to the present calibration would involve filling photometry gaps, obtaining more accurate and on-system photometry, knowing better log g and [Fe/H] values, improving the statistics for data-impoverished groups of stars such as metal-poor K dwarfs, applying small tweaks in the processing pipeline, and obtaining better empirical temperature and BC relations, especially for supergiants and M stars. A way to estimate dust extinction from M dwarf colors is pointed out.

  14. HPV knowledge and vaccine acceptance in an uninsured Hispanic population in Providence, RI.

    PubMed

    Chau, Jeff; Kibria, Farzana; Landi, Macayla; Reilly, Melissa; Medeiros, Tania; Johnson, Heather; Yekta, Shahla; De Groot, Anne S

    2014-05-01

    The Food and Drug Administration has approved two human papillomavirus (HPV) vaccines for use by men and women in the United States. The vaccines not only protect against HPV infection, but also reduce the risk of cervical cancer in women. Despite the widespread availability of these vaccines, vulnerable populations such as those with low incomes have been reported to have limited access to and knowlege about HPV vaccines. In order to evaluate and improve HPV vaccination uptake in a population of uninsured, low-income Spanish- speaking individuals attending a free clinic in Rhode Island, we administered a questionnaire regarding knowledge, attitudes, and practices (KAP) and performed an education intervention. We found that knowledge of HPV infection and cervical cancer among the patients sampled was low when comparing Hispanics to non-Hispanics (47.2%, 85.7%, respectively) but willingness to vaccinate oneself or one's child was very high after a brief video- based intervention.

  15. Effects of Alleghenian accretion of the Boston Platform on the Western Narragansett Basin, RI

    SciTech Connect

    Mosher, S.

    1985-01-01

    Pennsylvanian metasediments in the western Narragansett Basin, Rhode Island, form multiply folded, nappe-like (lambda=2.5 km) structures and have been metamorphosed syntectonically to staurolite-sillimanite grades. These exposures are the deepest structural levels within the basin and have important implications for the nature of the Alleghenian orogeny in SE New England. Early folds exhibit extensive transposition in hinge regions and are refolded twice along nearly coaxial, N-trending axes. Foliations are associated with all three folding events, and the overall direction of tectonic transport is westward. Zones of intense strike-slip-related deformation are present, but not as intense as within the Beaverhead Shear Zone in the basin center. The abrupt, 5 km jog in the western basin margin is an original feature over which the metasediments were thrust as evidenced by foliation patterns around this margin. Styles of deformation, relatively high T/P conditions, and an S-type Permian igneous intrusion in the western basin are all suggestive of continental collision. The increasing metamorphic grade westward and the African affinities of the basement suggest that the Boston Platform was associated with African until the Permian. Thus basin formation would be related to Pennsylvanian intraplate deformation during movement of Africa toward North America. The orogenic features in SE New England and the rest of the Appalachians are consistent with early oblique subduction closing the southern ocean between North American and Africa followed by normal convergence closing the smaller remaining northern ocean.

  16. A new polymorphism for the RI22H mutation in hereditary pancreatitis

    PubMed Central

    Howes, N; Greenhalf, W; Rutherford, S; O'Donnell, M; Mountford, R; Ellis, I; Whitcomb, D; Imrie, C; Drumm, B; Neoptolemos, J

    2001-01-01

    BACKGROUND AND AIMS—Hereditary pancreatitis (HP) is a rare form of recurrent acute and chronic pancreatitis. Mutations in the cationic trypsinogen (protease serine 1, PRSS1) gene have been identified as causing HP. The R122H (previously known as R117H) mutation is the commonest and can be detected by a single and rapid polymerase chain reaction/restriction fragment length polymorphism (PCR/RFLP) based technique using the AflIII enzyme. This test however may give a false negative result in the presence of a neutral polymorphism within the enzyme recognition site. The frequency of this event was examined by sequencing studies in patients with HP and in healthy controls.
METHODS—Of 60 families identified by the UK and Ireland consortium of EUROPAC (European Registry for Hereditary Pancreatitis and Familial Pancreatic Cancer), 51 were screened for R122H, N29I, and A16V mutations using standard techniques, and by sequencing of all five exons of cationic trypsinogen.
RESULTS—Twelve families had the N29I mutation, one family had A16V and, on standard testing, 15 families had the R122H mutation. An additional family with the R122H mutation was found on direct sequencing. The false negative result was due to a neutral polymorphism C→T at the third base of the codon, not affecting the amino acid coded for, destroying the AflIII restriction site. This polymorphism was not observed in 50 DNA specimens (100 chromosomes) from controls nor from 50 individuals from PRSS1 mutation negative HP families. A novel mutation specific PCR was developed to avoid this pitfall.
CONCLUSIONS—One of the 16 families with HP and an R122H mutation contained a polymorphism affecting the AflIII restriction site. Adoption of an alternative R122H assay is important for genetic studies in individuals with apparent HP.


Keywords: hereditary pancreatitis; R122H mutation PMID:11156648

  17. 77 FR 7025 - Safety Zones; America's Cup World Series, East Passage, Narragansett Bay, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-10

    ... Federal Register (73 FR 3316). Public Meeting We do not now plan to hold a public meeting. But you may... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zones; America's Cup World Series, East Passage... Bay, Rhode Island, during the America's Cup World Series sailing vessel racing event. This safety...

  18. Colonization of arbuscular-mycorrhizal fungi on Ri T-DNA transformed roots in synthetic medium.

    PubMed

    Abdul-Khaliq; Bagyaraj, D J

    2000-11-01

    Hairy root culture of tomato (Lycopersicon esculantum L.) was induced with three strains of Agrobacterium rhizogenes namely A4, ATCC 15834 and LBA 9402. The best response in terms of growth of hairy root was observed with A. rhizogenes strain A4 and LBA 9402 followed by ATCC 15834. Hairy roots were maintained on Murashige and Skoog (MS) medium but it could also grow on minimal (M) medium. Spores of Gigaspora margarita were isolated by wet sieving and decanting method and further recovered by sucrose density gradient method. A new method for surface sterilization of spores has been described which is simpler than the methods described earlier. Surface sterilized spores of G. margarita were used for inoculation of transformed roots grown on M medium as it was found more favourable for germination and growth of spores. During co-cultivation, mycorrhizal spore germination and its penetration into root cortex were observed. Inter and intracellular mycelial spread and formation of arbuscules were also observed in the cortical region of transformed roots of this plant.

  19. 2011 Organometallic Chemistry (July 10-15, 2011, Salve Regina University, Newport, RI)

    SciTech Connect

    Dr. Emilio Bunel

    2011-07-15

    Organometallic chemistry has played and will continue to play a significant role in helping us understand the way bonds are made or broken in the presence of a transition metal complex. Current challenges range from the efficient exploitation of energy resources to the creative use of natural and artificial enzymes. Most of the new advances in the area are due to our extended understanding of processes at a molecular level due to new mechanistic studies, techniques to detect reaction intermediates and theory. The conference will bring the most recent advances in the field including nanocatalysis, surface organometallic chemistry, characterization techniques, new chemical reactivity and theoretical approaches along with applications to organic synthesis and the discovery of new materials. The Conference will bring together a collection of investigators who are at the forefront of their field, and will provide opportunities for junior scientists and graduate students to present their work in poster format and exchange ideas with leaders in the field. Six outstanding posters will be selected for short talks. The collegial atmosphere of this Conference, with programmed discussion sessions as well as opportunities for informal gatherings in the afternoons and evenings, provides an avenue for scientists from different disciplines to brainstorm and promotes cross-disciplinary collaborations in the various research areas represented. Graduate students and postdoctoral fellows should also consider participating in the Gordon Research Seminar on Organometallic Chemistry (July 9-10, same location) which is specially designed to promote interaction and discussion between junior scientists.

  20. To Knock Down Barriers for Returning Adult Learners, RI Tries Something New

    ERIC Educational Resources Information Center

    Money, Tracy; Littky, Dennis; Bush, Adam

    2015-01-01

    In a historic unanimous vote on May 20, 2015, the Rhode Island Council on Postsecondary Education welcomed College Unbound as a degree-granting postsecondary option in the state, designed to serve the more than 110,000 Rhode Island adults who began but did not complete bachelor's degrees. The college is the adult-learning initiative of Big Picture…

  1. 77 FR 20330 - Disestablishment of Restricted Area; Rhode Island Sound off Newport, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-04

    ... Department of the Army, Corps of Engineers 33 CFR Part 334 Disestablishment of Restricted Area; Rhode Island... located in the waters of Rhode Island Sound, 4 nautical miles due south of Lands End in Newport, Rhode Island. The restricted area was established on August 31, 1987. The purpose of the restricted area was...

  2. 77 FR 34414 - Submission for Review: Annuitant's Report of Earned Income, RI 30-2

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-11

    ... of appropriate automated, electronic, mechanical, or other technological collection techniques or other forms of information technology, e.g., permitting electronic submissions of responses. DATES... NW., Washington, DC 20415-3500 or sent via electronic mail to Alberta.Butler@opm.gov . FOR...

  3. Pushing open-ocean organic paleo-environmental proxies to the margin: Narragansett Bay, RI

    NASA Astrophysics Data System (ADS)

    Salacup, J. M.; Herbert, T.; Prell, W. L.

    2010-12-01

    Estuarine sediment deposits provide an under-utilized opportunity to reconstruct high-resolution records of environmental change from the highly sensitive intersection of oceanic and terrestrial systems. Previous applications of both well-established and novel organic geochemical proxies to estuaries have met with mixed success. Compared to oceanic settings, the large dynamic range of tidal currents, water temperature, salinity, nutrients, and productivity both enrich and complicate estuarine sedimentary records. Here, we present the results of monthly samples of water-column particulate organic matter and compare them to a suite of sediment cores in an effort to elucidate how the environmental signal produced in the water-column is translated to the sediment. Specifically, we measured alkenones and glycerol dialkyl glycerol tetraethers (GDGTs), the bases for the Uk’37 sea-surface temperature (SST) and C-37total primary productivity proxies, and the TEX86 SST and BIT Index proxies, respectively. Alkenones, produced by haptophyte algae, are present in most of our water-column samples; however, concentrations in many samples are too low to reliably calculate temperature. When reliable, water-column alkenones infer SSTs between 13-16°C, consistent with sediment core-top Uk’37 SST estimates. These correlate to May and Oct SSTs, coinciding with the terminations of the summer-fall and winter-spring algal blooms in Narragansett Bay. In contrast to alkenone fingerprints reported from the much lower salinity Chesapeake Bay, Narragansett Bay samples lack significant contributions of the C37:4 ketone, consistent with production by open-ocean haptophytes. Notably, sedimentary records of Uk’37-inferred SST show strong inter-core centennial-to-decadal coherence. The structure and absolute values of inferred SSTs correlate well with instrumental mean Sept-Oct air temperatures back to 1895, and contain structure consistent with the late Little Ice Age and 20th century warming. Our record indicates that the past 100 in Narragansett Bay are the warmest in at least the last 500. Water-column values of the GDGT-based BIT Index, a proxy for the delivery of terrestrial organic matter (TOM), decrease down-Bay with distance from the major rivers. However, absolute values of the index, exceeding 0.8-0.9 in the upper half of the Bay, are more consistent with soil samples than water and are hard to reconcile with high level of marine productivity. Sedimentary values of the BIT Index are also high, between ~0.4 and 0.8, and their profiles suggest that Colonization (~1700) and Industrialization (~1850) altered terrestrial sediment delivery to the Bay. Such high values of the BIT Index suggest the utility of TEX86 may be complicated by terrestrial GDGT contributions. Indeed, sedimentary values for TEX86 are highly variable and show little correlation with Uk’37 or instrumental records. Our results confirm the utility of organic geochemical proxies in estuarine settings while advocating the application of more than one. In Narragansett Bay, this approach has allowed the reconstruction of local historically and climatically important events such as the impacts of European settlement, the Industrial Revolution, and 20th century warming.

  4. VizieR Online Data Catalog: NGC 1960 (RI)c photometric catalogue (Jeffries+, 2013)

    NASA Astrophysics Data System (ADS)

    Jeffries, R. D.; Naylor, T.; Mayne, N. J.; Bell, C. P. M.; Littlefair, S. P.

    2014-09-01

    In order to select faint, low-mass targets for subsequent spectroscopy, a photometric survey of NGC 1960 was performed using the Wide Field Camera (WFC) at the Isaac Newton Telescope (INT) on La Palma on the night of the 2004 September 28. The WFC consists of four thinned EEV 2kx4k CCDs (numbered 1-4) covering 0.33-arcsec/pix on the sky. (1 data file).

  5. 16th iWoRiD scientific summary and personal impressions

    NASA Astrophysics Data System (ADS)

    Vacchi, Andrea

    2015-08-01

    The development of Radiation Imaging Detectors dedicated to specific front edge use is a rapidly expanding galaxy taking force from a healthy mixture of growing ambitions within basic science targets and applicative use in many contiguous fields. The growth of the high technology imaging tools market is a relevant motivating element. On the scene of this conference a flow of very accurate and informative presentations has allowed to gather a vivid image on the almost frantic target oriented work, the results shown have often surpassed the most visionary expectations.

  6. FACTORS AFFECTING TIME-ACTIVITY BUDGETS OF BUFFLEHEAD WINTERING IN NARRAGANSETT, BAY, RI

    EPA Science Inventory

    Daily activities of wintering waterfowl can be influenced by the physical environment and by habitat factors such as prey abundance and availability. We examined variability in diurnal activity budgets of Bufflehead (Bucephala albeola) wintering at seven locations within Narragan...

  7. ELEMENTAL FINGERPRINTS OF JUVENILE WINTER FLOUNDER OTOLITHS FROM NARRAGNSETT BAY, RI AND SURROUNDING COASTAL PONDS

    EPA Science Inventory

    Elemental fingerprinting has become a powerful tool in fisheries science for identifying fish migration patterns, seasonal changes in habitat use, and for delineating the nursery origins of adult fish populations. In this study we investigated whether elemental signatures in juve...

  8. 77 FR 16974 - Special Local Regulations; Ocean State Tall Ships Festival 2012, Narragansett Bay, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-23

    ... limited maneuvering ability to proceed in a single file behind numerous other spectator craft viewing the..., 2008, issue of the Federal Register (73 FR 3316). Public Meeting We do not now plan to hold a...

  9. Very High Resolution Image of Icy Cliffs on Europa and Similar Scales on Earth (Providence, RI)

    NASA Technical Reports Server (NTRS)

    1998-01-01

    The top image is a very high resolution view of the Conamara Chaos region on Jupiter's moon Europa, showing an area where icy plates have been broken apart and moved around laterally. The top of this image is dominated by corrugated plateaus ending in icy cliffs over a hundred meters (a few hundred feet) high. Debris piled at the base of the cliffs. The bottom image is an aerial photograph of downtown Providence, Rhode Island at the same scale. The bright white circular feature in the top center of the Providence image is an indoor hockey rink, and one can find many craters in the Europa image about the same size. Blocks of debris which have fallen from the cliffs on the Europa image are about the same size as houses seen in the Providence image, and the largest blocks are almost as large as the Rhode Island state capitol building (large white building in upper left of Providence image). A fracture that runs horizontally across the center of the Europa image is about the same width as the freeway which runs along the bottom of the Providence image.

    North is to the top right of the Europa image, and the sun illuminates the surface from the east. The Europa image is centered at approximately 9 degrees north latitude and 274 degrees west longitude. The images each cover an area approximately 1.7 kilometers by 4 kilometers (1 mile by 2.5 miles). The resolution is 9 meters (30 feet) per picture element. The Europa image was taken on December 16, 1997 at a range of 900 kilometers (540 miles) by the solid state imaging system on NASA's Galileo spacecraft.

    The Jet Propulsion Laboratory, Pasadena, CA manages the Galileo mission for NASA's Office of Space Science, Washington, DC. JPL is an operating division of California Institute of Technology (Caltech).

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://www.jpl.nasa.gov/ galileo.

  10. Performance of Ion Surfing Rf-carpets for High-Energy RI Beam Gas Catcher

    NASA Astrophysics Data System (ADS)

    Arai, Fumiya; Ito, Yuta; Katayama, Ichiro; Schury, Peter; Sonoda, Tetsu; Wada, Michiharu; Wollnik, Hermann

    A new concept for the transport of ions in gas by means of a traveling potential wave super-imposed on an rf-carpet (RFC), known as ion surfing, has recently been proposed. We demonstrated, for the first time, the transport and extraction of K+ and Cs+ ions using a circular rf-carpet in high pressure He gas. An efficiency of nearly 100% was obtained . In addition, we compared an RFC of a fine pitch (0.16 mm) and the one of a rough pitch (0.32 mm). For higher pressure, the fine RFC was found to be better than the rough RFC.

  11. 76 FR 14696 - Ananke, Inc., Providence, RI; Notice of Negative Determination on Reconsideration

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-17

    ...). The Department's Notice was published in the Federal Register on December 13, 2010 (75 FR 77664). The... Solutions (an offshoring/outsourcing company)'' and included support documentation. Information...

  12. 75 FR 77664 - Ananke, Inc., Providence, RI; Notice of Affirmative Determination Regarding Application for...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-13

    ... on October 25, 2010 (75 FR 65520-21). The initial investigation resulted in a negative determination... offshoring/outsourcing company)'' and included support documentation. The Department of Labor has...

  13. Analysis of Trends in Fish Assemblages in Narragansett Bay, RI/MA

    EPA Science Inventory

    Estuarine fish are highly valued resources that are affected by several factors, including climate, landscape, pollution, and fishing pressure. Here, we examine patterns of variability in estuarine fish assemblages in Narragansett Bay, an estuary located in Rhode Island and Mass...

  14. Reconciling Comparative and Internal Reconstruction: The Case of Old Japanese /ti, ri, ni/.

    ERIC Educational Resources Information Center

    Unger, J. Marshall

    2000-01-01

    Some Korean-Japanese coronals complicate the internal reconstruction of pre-old Japanese (OJ). Conflicting results of various studies can be resolved if other pre-OJ sound changes supported by Korean etymologies are properly integrated into the internal reconstruction of Japanese verb paradigms. (Author/VWL)

  15. Results of the EURAMET.RI(II)-S6.I-129 supplementary comparison

    NASA Astrophysics Data System (ADS)

    García-Toraño, Eduardo; Altzitzoglou, Timotheos; Auerbach, Pavel; Bé, Marie-Martine; Lourenço, Valérie; Bobin, Christophe; Cassette, Philippe; Dersch, Rainer; Kossert, Karsten; Nähle, Ole; Peyrés, Virginia; Pommé, Stefaan; Rozkov, Andrej; Sanchez-Cabezudo, Anabel; Sochoro&vacute; , Jana

    2015-01-01

    An international comparison of the long-lived gamma-ray emitter 129I has been recently completed. A total of 5 laboratories measured a solution prepared by Centro de Investigaciones Energéticas, Medioambientales y Tecnológicas (CIEMAT). Aliquots of the master solution were standardized in terms of activity per mass unit by participant laboratories using 4 different techniques. The results of the comparison can be used as the basis for establishing the equivalence among the laboratories. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  16. Results of the EURAMET.RI(II)- S7.Sm-151 supplementary comparison (EURAMET Project 1292)

    NASA Astrophysics Data System (ADS)

    Bé, Marie-Martine; Cassette, Philippe; Brondeau, Laurine; Fréchou, Carole; Lourenço, Valérie; Altzitzoglou, Timotheos; Pommé, Stefaan; Rožkov, Andrej; Auerbach, Pavel; Sochorová, Jana; Dziel, Tomasz; Dersch, Rainer; Kossert, Karsten; Nähle, Ole; Stadelmann, Guillaume; Isnard, Hélène; Krivošík, Matej; Ome&tacute; ko&vacute; , Jarmila

    2015-01-01

    An international comparison of the activity standardisation of the relatively long-lived gamma-ray emitter 151Sm has been recently completed. A total of six laboratories measured a solution prepared by CEA/LNHB and CEA/LANIE. Aliquots of the master solution were standardized in terms of activity per mass unit by participant laboratories using 2 different techniques. The results of the comparison can be used as the basis for establishing equivalence among the laboratories. The activity measurements of this comparison are part of the joint research project 'Metrology for Radioactive Waste Management' of the European Metrology Research Programme (EMRP). One aim of this project is a new determination of the 151Sm half-life. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  17. 76 FR 82001 - Submission for Review: Alternative Annuity Election, RI 20-80

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-29

    ... by the Clinger-Cohen Act (Pub. L. 104-106), OPM is soliciting comments for this collection. The information collection was previously published in the Federal Register on June 10, 2011, at Volume 76...

  18. 76 FR 34108 - Submission for Review: Representative Payee Survey (RI 38-115)

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-10

    ... Clinger-Cohen Act (Pub. L. 104-106), OPM is soliciting comments for this collection. The information collection was previously published in the Federal Register on March 21, 2011 at Volume 76 FR 15350...

  19. 76 FR 82000 - Submission for Review: Request for Change to Unreduced Annuity, RI 20-120

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-29

    ... Volume 76 FR 32997 allowing for a 60-day public comment period. No comments were received for this.... chapter 35) as amended by the Clinger-Cohen Act (Pub. L. 104-106), OPM is soliciting comments for...

  20. 76 FR 65211 - Steiff North America, Lincoln, RI; Notice of Affirmative Determination Regarding Application for...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-20

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF LABOR... Department's Notice of Determination was published in the Federal Register on October 5, 2011 (76 FR 61743... asserts that subject firm produces ``plush toys, clothing, wooden toys, and other children related...

  1. Two-dimensional RI spectroscopy: Automation with pulse shaping and application to amyloid folding

    NASA Astrophysics Data System (ADS)

    Shim, Sang-Hee

    Two dimensional infrared (2D IR) spectroscopy has proven itself as a unique tool for probing the structures and dynamics of chemical and biological systems. Now, 2D IR spectroscopy has progressed to the point of being a ready-to-operate method for general researchers to address novel scientific questions. For that purpose, this thesis includes three practices: inventing a technique for mid-infrared pulse shaping; developing an automated method of collecting 2D IR spectra; applying it to delineate the pathway of amyloid formation. First, we developed a means to shape femtosecond pulses in the mid-infrared using a germanium acousto-optic modulator (Ge AOM). The Ge AOM directly modulates the amplitude and phase of mid-IR light between 2-18 mum, producing intense shaped pulses with high resolution and good phase stability. Second, we combined the pulse shaper with a pump-probe geometry to develop a new method of 2D IR spectroscopy. The pump-probe geometry simplifies the optical setup and produces properly phased absorptive lineshapes without additional data processing. The pulse shaper not only reproduces most conventional methods, but also allows new pulse shapes and phase combinations to further enhance 2D IR spectroscopy. Moreover, eliminating moving parts accelerates data collection so that an entire 2D IR spectrum can be obtained in <1 sec. Such ease of use, versatility and speed of our pulse shaping 2D IR method enables more sophisticated and reliable experiments. Finally, we tracked amyloid formation of human Islet amyloid polypeptide (hIAPP), related to type II diabetes. By continuously scanning 2D IR spectra, we can follow the hIAPP fibril formation indefinitely by collecting data on-the-fly without reinitiating the aggregation for each data point. We used isotope-labeling to probe the structural evolution of six different residues along the 37-residue hIAPP peptide. By separately monitoring the six residues, we found that the peptides nucleate near the turn of the hairpin, followed by a propagation of the two parallel beta-sheets with the N-terminal beta-sheet forming twice as fast as the C-terminal sheet. The experimental approach provides a detailed view of the assembly pathway of hIAPP fibril as well as a general methodology for studying other amyloid forming peptides.

  2. TRENDS IN THE BENTHIC COMMUNITIES OF SUB-EMBAYMENTS OF NARRAGANSETT BAY, RI

    EPA Science Inventory

    Narragansett Bay has been a valued ecological resource from pre-colonial periods, and humans have historically altered the landscape around the Bay. This alteration was accelerated after European colonization. Land was clear-cut. Wetlands and tidal flats dredged and filled. Wi...

  3. You Gotta Have a Gimmick: Aaron Coutu--Greenville Public Library, RI

    ERIC Educational Resources Information Center

    Library Journal, 2004

    2004-01-01

    This brief article describes the impact Aaron Coutu has had on the teens at the Greenville Public Library in Rhode Island. Coutu has gotten on the good side of many of the teens in the library since he is willing to undergo various personal humiliations, like shaving his head if they read 150 books (they read 196) or dyeing his hair green if they…

  4. Streamlined RI/FS planning for the groundwater operable unit at the Weldon Spring Site

    SciTech Connect

    Picel, M.H.; Durham, L.A.; Blunt, D.L.; Hartmann, H.M.

    1995-12-31

    The U.S. Department of Energy (DOE) is conducting cleanup activities at the chemical plant area of the Weldon Spring Site located in St. Charles County, Missouri, about 48 km (30 mi) west of St. Louis and 22 km (14 mi) southwest of the City of St. Charles. The 88-ha (217-acre) chemical plant area is chemically and radioactively contaminated as a result of uranium processing activities conducted by the U.S. Atomic Energy Commission during the 1950s and 1960s. The Army also used the chemical plant area for the production of explosives in the 1940s. The Weldon Spring Site chemical plant area was listed on the National Priorities List (NPL) in 1989. Adjacent to the chemical plant area is another NPL site known as the Weldon Spring Ordnance Works. The ordnance works area is a former explosive production facility that manufactured trinitrotoluene (TNT) and dinitrotoluene (DNT) during World War II. The ordnance works area covers 7,000 ha (17,232 acres); cleanup of this site is managed by the U.S. Army Corps of Engineers (CE).

  5. 78 FR 8683 - Environmental Impact Statement: Theodore Francis Green Airport, Warwick, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-06

    ... Federal Aviation Administration Environmental Impact Statement: Theodore Francis Green Airport, Warwick... Environmental Impact Statement (EIS) Re-evaluation has been prepared for Theodore Francis Green Airport, Warwick, Rhode Island. FOR FURTHER INFORMATION CONTACT: Richard Doucette, Environmental Program Manager,...

  6. Evidence-Based Research: The Impact of the College Crusade GEAR UP Program in RI

    ERIC Educational Resources Information Center

    Fogg, Neeta P.; Harrington, Paul E.

    2015-01-01

    The Gaining Early Awareness and Readiness for Undergraduate Program, more commonly known as GEAR UP, is a product of federal legislation designed to increase high school completion and college attendance of low-­income youth. It is a federally funded discretionary grant program that is planned, organized and operated at the state and local level.…

  7. Final RFI/RI Report Burma Road Rubble Pit (231-4F). Volume 1

    SciTech Connect

    Palmer, E.

    1995-09-01

    The Savannah River Site is located in Aiken, Barnwell, and Allendale counties, in South Carolina. Certain activities at the SRS require operating or post closure permits issued in accordance with Resource Conservation and Recovery Act.

  8. FcγRI (CD64): an identity card for intestinal macrophages.

    PubMed

    De Calisto, Jaime; Villablanca, Eduardo J; Mora, J Rodrigo

    2012-12-01

    Macrophages are becoming increasingly recognized as key cellular players in intestinal immune homeostasis. However, differentiating between macrophages and dendritic cells (DCs) is often difficult, and finding a specific phenotypic signature for intestinal macrophage identification has remained elusive. In this issue of the European Journal of Immunology, Tamoutounour et al. [Eur. J. Immunol. 2012. 42: 3150-3166] identify CD64 as a specific macrophage marker that can be used to discriminate DCs from macrophages in the murine small and large intestine, under both steady-state and inflammatory conditions. The authors also propose a sequential 'monocyte-waterfall' model for intestinal macrophage differentiation, with implications for immune tolerance and inflammation at the gut mucosal interface. This Commentary will discuss the advantages and potential limitations of CD64 as a marker for intestinal macrophages. PMID:23255010

  9. Identifizierung der Nitratabbauprozesse und Prognose des Nitratabbaupotenzials in den Sedimenten des Hessischen Rieds

    NASA Astrophysics Data System (ADS)

    Kludt, Christoph; Weber, Frank-Andreas; Bergmann, Axel; Knöller, Kay; Berthold, Georg; Schüth, Christoph

    2016-09-01

    Microbial denitrification contributes significantly to the mitigation of nitrate contamination in sedimentary aquifers by reducing nitrate coupled to the consumption of organic carbon (heterotrophic) and iron sulphides like pyrite (autotrophic). However, these phases are often only present in trace amounts and can become depleted, so that denitrification will eventually cease. In order to implement measures within the EC-Water Framework Directive, we investigated the denitrification potential and the denitrification processes in the sediments of the Hessian Ried. The reduction potential was quantified and characterized by solid-phase analyses of drill core samples. Depth-oriented investigations of hydrochemistry (i.e. stable isotopes, N2Excess) allowed determining nitrate input, reduction progress and average reduction kinetics upstream of selected wells. Despite low sulphide contents (max. 123 mg-S/kg), autotrophic denitrification was typically the dominant process. The results can be used to delineate risk areas, downstream of which denitrification can be expected to cease in the near future.

  10. Results of the International Validation of the in vivo rodent alkaline comet assay for the detection of genotoxic carcinogens: Individual data for 1,2-dibromoethane, p-anisidine, and o-anthranilic acid in the 2nd step of the 4th phase Validation Study under the JaCVAM initiative.

    PubMed

    Takasawa, Hironao; Takashima, Rie; Narumi, Kazunori; Kawasako, Kazufumi; Hattori, Akiko; Kawabata, Masayoshi; Hamada, Shuichi

    2015-07-01

    As part of the Japanese Center for the Validation of Alternative Methods (JaCVAM)-initiative International Validation Study of an in vivo rat alkaline comet assay, we examined 1,2-dibromoethane (DBE), p-anisidine (ASD), and o-anthranilic acid (ANT) to investigate the effectiveness of the comet assay in detecting genotoxic carcinogens. Each of the three test chemicals was administered to 5 male Sprague-Dawley rats per group by oral gavage at 48, 24, and 3h before specimen preparation. Single cells were collected from the liver and glandular stomach at 3h after the final dosing, and the specimens prepared from these two organs were subjected to electrophoresis under alkaline conditions (pH>13). The percentage of DNA intensity in the comet tail was then assessed using an image analysis system. A micronucleus (MN) assay was also conducted using these three test chemicals with the bone marrow (BM) cells collected from the same animals simultaneously used in the comet assay, i.e., combination study of the comet assay and BM MN assay. A genotoxic (Ames positive) rodent carcinogen, DBE gave a positive result in the comet assay in the present study, while a genotoxic (Ames positive) non-carcinogen, ASD and a non-genotoxic (Ames negative) non-carcinogen, ANT showed negative results in the comet assay. All three chemicals produced negative results in the BM MN assay. While the comet assay findings in the present study were consistent with those obtained from the rodent carcinogenicity studies for the three test chemicals, we consider the positive result in the comet assay for DBE to be particularly meaningful, given that this chemical produced a negative result in the BM MN assay. Therefore, the combination study of the comet assay and BM MN assay is a useful method to detect genotoxic carcinogens that are undetectable with the BM MN assay alone.

  11. Treatment Plan Adherence for Your Child With JA

    MedlinePlus

    ... with the medication which controls the inflammation,” says Carol Lindsley, MD, chief of pediatric rheumatology at the ... with the medication which controls the inflammation,” says Carol Lindsley, MD, chief of pediatric rheumatology at the ...

  12. Cross-Border Higher Education for Regional Integration:Analysis of the JICA-RI Survey on Leading Universities in East Asia. JICA-RI Working Paper. No. 26

    ERIC Educational Resources Information Center

    Kuroda, Kazuo; Yuki, Takako; Kang, Kyuwon

    2010-01-01

    Set against the backdrop of increasing economic interdependence in East Asia, the idea of regional integration is now being discussed as a long-term political process in the region. As in the field of the international economy, de facto integration and interdependence exist with respect to the internationalization of the higher education system…

  13. APMP key comparison for the measurement of air kerma for 60Co (APMP.RI(I)-K1.1)

    NASA Astrophysics Data System (ADS)

    Webb, D. V.; Lee, J.-H.; Budiantari, C. T.; Laban, J.; Saito, N.; Srimanoroth, S.; Khaled, N. E.

    2016-01-01

    The results are reported for an APMP.R(I)-K1.1 comparison that extends the regional comparison of standards for air kerma APMP.R(I)-K1 to several laboratories unable to participate earlier. The comparison was conducted with the goal of supporting the relevant calibration and measurement capabilities (CMCs) planned for publication by the participant laboratories. The comparison was conducted by the pilot laboratory, the Australian Radiation Protection and Nuclear Safety (ARPANSA), Australia, supported by the Institute of Nuclear Energy Research (INER), Taiwan, in a modified ring-shaped arrangement from September 2009 to November 2010, in parallel with an APMP.R(I)-K4 comparison being piloted by the INER. The laboratories that took part in the comparison were the ARPANSA, the Centre of Technology of Radiation Safety and Metrology (PTKMR-BATAN), Indonesia, the Division of Radiation and Medical Devices (DMSC), Thailand, the INER, the National Centre for Radiation Science (NCRS), New Zealand, the National Institute for Standards (NIS), Egypt and the National Metrology Institute of Japan (NMIJ/AIST), Japan. The two primary laboratories, ARPANSA and NMIJ, were chosen as the linking laboratories. Three ionization chambers were used as transfer instruments to be calibrated in terms of air kerma in 60Co radiotherapy beams. The comparison result is based on the ratio between the air kerma calibration coefficients (NK) determined by the participants and the mean of the results of the linking laboratories. The mean comparison ratio was found to be within 0.5 % of the key comparison reference value KCRV. The largest deviation between any two comparison ratios for the three chambers in terms of air kerma was 2.0 %. An analysis of the participant uncertainty budgets enabled the calculation of degrees of equivalence (DoE) in terms of the deviations of the results and their associated uncertainties. As a result of this APMP comparison, the BIPM key comparison database (KCDB) should include three new entries since neither the PTKMR-BATAN nor the NCRS have yet been declared designated institutes and consequently their results cannot be entered. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  14. Bomb Me: Trans/acting Subject into Object, an Installation for R.I. Simon and Angela Failler

    ERIC Educational Resources Information Center

    Saklikar, Renée Sarojini

    2014-01-01

    This installation is one of a series made and being made while the author writes a life-long poem chronicle, "thecanadaproject." The photographs were taken as the author sifted through her personal archive--a collection that is at once intimate and filled with fragments from a public repository: that of the bombing of an airplane in…

  15. 77 FR 33007 - Submission for Review: Initial Certification of Full-Time School Attendance, RI 25-41

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-04

    ..., Union Square 370, Retirement Services, 1900 E Street NW., Washington, DC 20415-3500, Attention: Alberta... Services Publications Team, Office of ] Personnel Management, 1900 E Street NW., Room 4332, Washington, DC... Services, Office of Personnel Management (OPM) offers the general public and other federal agencies...

  16. Weak-coupling structure of proton resonant states in 23Al studied with RI beam at CNS

    NASA Astrophysics Data System (ADS)

    He, J. J.; Kubono, S.; Teranishi, T.; Notani, M.; Michimasa, S.; Baba, H.; Nishimura, S.; Nishimura, M.; Yanagisawa, Y.; Hokoiwa, N.; Kibe, M.; Gono, Y.; Moon, J. Y.; Lee, J. H.; Lee, C. S.; Iwasaki, H.; Kato, S.

    2006-07-01

    Proton resonances in 23Al have been investigated for the first time by the resonant elastic and inelastic scattering of 22Mg+p by using a 4.38 MeV/nucleon 22Mg beam bombarding a thick Hydrogen target. The low-energy 22Mg beam was separated by the CNS radioactive ion beam separator (CRIB). A new resonant state due to elastic scattering was observed at Ex = 3.00 MeV with a Jπ = (3/2+) assignment. Other three excited states due to resonant inelastic scattering at 3.14, 3.26 and 3.95 MeV were identified and all mainly decay to the first excited state in 22Mg by the proton emissions. The newly observed 3.95-MeV state probably has a spin-parity of Jπ = (7/2+). The resonant properties were determined from an R-matrix analysis of the excitation functions. The weak-coupling structure in 23Al is discussed in conjunction with a shell-model calculation.

  17. Perceptions of Judges toward Rigor of High School Senior Capstone Projects at a Northern RI Charter School

    ERIC Educational Resources Information Center

    Skeldon, Michael A.

    2012-01-01

    With trends toward high stakes testing moving inexorably forward, project-based components of Rhode Island's Performance Based Graduation system have been largely overlooked. Existing studies focus primarily on implementation of senior projects (Davidson, 2009; Lorenz, 1999; Mayer, 1999; Nicolini, 1999; Shaunessy, 2004; Singer & Hubbard,…

  18. Simultaneous analysis of carbohydrates and organic acids by HPLC-DAD-RI for monitoring goat's milk yogurts fermentation.

    PubMed

    da Costa, Marion Pereira; Frasao, Beatriz da Silva; Lima, Bruno Reis Carneiro da Costa; Rodrigues, Bruna Leal; Conte Junior, Carlos Adam

    2016-05-15

    During yogurt manufacture, the lactose fermentation and organic acid production can be used to monitor the fermentation process by starter cultures and probiotic bacteria. In the present work, a simple, sensitive and reproducible high-performance liquid chromatography with dual detectors, diode array detector and refractive index was validated by simultaneous analysis of carbohydrates and organic acids in goat milk yogurts. In addition, pH and bacterial analysis were performed. Separation of all the compounds was performed on an Aminex HPX-87H column (300×7.8 mm, 9 µm) utilizing a 3 mmol L(-1) sulfuric acid aqueous mobile phase under isocratic conditions. Lactose, glucose, galactose, citric, lactic and formic acids were used to evaluate the following performance parameters: selectivity, linearity, precision, limit of detection (LOD), limit of quantification (LOQ), decision limits (CCα), detection capabilities (CCβ), recovery and robustness. For the method application a six goat milk yogurts were elaborated: natural, probiotic, prebiotic, symbiotic, cupuassu fruit pulp, and probiotic with cupuassu fruit pulp. The validated method presented an excellent selectivity with no significant matrix effect, and a broad linear study range with coefficients of determination higher than 0.995. The relative standard deviation was lower than 10% under repeatability and within-laboratory reproducibility conditions for the studied analytes. The LOD of the method was defined from 0.001 to 0.003 µg g(-1), and the LOQ from 0.003 to 0.013 µg g(-1). The CCα was ranged from 0.032 to 0.943 µg g(-1), and the CCβ from 0.053 to 1.604 µg g(-1). The obtained recovery values were from 78% to 119%. In addition, the method exhibited an appropriate robustness for all parameter evaluated. Base in our data, it was concluded that the performance parameters demonstrated total method adequacy for the detection and quantification of carbohydrates and organic acids in goat milk yogurts. The application of the method was successfully applied to monitoring different goat milk yogurts during fermentation. PMID:26992507

  19. Simultaneous analysis of carbohydrates and organic acids by HPLC-DAD-RI for monitoring goat's milk yogurts fermentation.

    PubMed

    da Costa, Marion Pereira; Frasao, Beatriz da Silva; Lima, Bruno Reis Carneiro da Costa; Rodrigues, Bruna Leal; Conte Junior, Carlos Adam

    2016-05-15

    During yogurt manufacture, the lactose fermentation and organic acid production can be used to monitor the fermentation process by starter cultures and probiotic bacteria. In the present work, a simple, sensitive and reproducible high-performance liquid chromatography with dual detectors, diode array detector and refractive index was validated by simultaneous analysis of carbohydrates and organic acids in goat milk yogurts. In addition, pH and bacterial analysis were performed. Separation of all the compounds was performed on an Aminex HPX-87H column (300×7.8 mm, 9 µm) utilizing a 3 mmol L(-1) sulfuric acid aqueous mobile phase under isocratic conditions. Lactose, glucose, galactose, citric, lactic and formic acids were used to evaluate the following performance parameters: selectivity, linearity, precision, limit of detection (LOD), limit of quantification (LOQ), decision limits (CCα), detection capabilities (CCβ), recovery and robustness. For the method application a six goat milk yogurts were elaborated: natural, probiotic, prebiotic, symbiotic, cupuassu fruit pulp, and probiotic with cupuassu fruit pulp. The validated method presented an excellent selectivity with no significant matrix effect, and a broad linear study range with coefficients of determination higher than 0.995. The relative standard deviation was lower than 10% under repeatability and within-laboratory reproducibility conditions for the studied analytes. The LOD of the method was defined from 0.001 to 0.003 µg g(-1), and the LOQ from 0.003 to 0.013 µg g(-1). The CCα was ranged from 0.032 to 0.943 µg g(-1), and the CCβ from 0.053 to 1.604 µg g(-1). The obtained recovery values were from 78% to 119%. In addition, the method exhibited an appropriate robustness for all parameter evaluated. Base in our data, it was concluded that the performance parameters demonstrated total method adequacy for the detection and quantification of carbohydrates and organic acids in goat milk yogurts. The application of the method was successfully applied to monitoring different goat milk yogurts during fermentation.

  20. SPATIAL AND TEMPORAL DISTRIBUTION OF COLOURED DISSOLVED ORGANIC MATTER (CDOM) IN NARRAGANSETT BAY, RI: IMPLICATIONS FOR PHYTOPLANKTON IN COASTAL WATERS

    EPA Science Inventory

    One indicator of health in estuarine and coastal ecosystems is the ability of local waters to transmit sunlight to planktonic, macrophytic, and other submerged vegetation for photosynthesis. The concentration of coloured dissolved organic matter (CDOM) is a primary factor affecti...