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Chinese-English Aviation and Space Dictionary
DTIC Science & Technology
1973-04-01
i.e., individual characters with re- duced numbers of strokes. this process is in effect eroding the traditional classification of a character by its...side rod 17 b X1&jt d aolyu- edge effect 18 birajie boundary; border; bound; 19 frontier; ,nd binJie jiaoy’,; .iý K! M narginal checking 20 bianjie...range missile; 23 very-long-range missile chaoynianchegb oghli151 .’ . long-range bomber; global 24 bomber; superbomber chaoyue h mhshu 14
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NEW APPROACHES: A hot air balloon from dustbin liners
NASA Astrophysics Data System (ADS)
Weaver, Nicholas
1998-07-01
This article describes how a simple hot air balloon, inflated by a hair dryer, can be made out of household bin liners and Sellotape. It can be used at sixth-form level as an application of the ideal gas equation, = constant, and is rather more exciting than heated pistons. It gives a taste of a simple engineering design process, although the students do have to be reasonably adept at geometry and algebra.
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Sample Batch Scripts for Running Jobs on the Peregrine System |
Science.gov Websites
script for a serial job in the debug queue #!/bin/bash #PBS -lnodes=1:ppn=1,walltime=500 #PBS -N test1 limit #PBS -l nodes=1 # one node #PBS -N test1 # Name of job #PBS -A CSC001 # project handle cd #PBS -q short # short queue #PBS -l nodes=4:ppn=24 # Number of nodes, put 24 processes on each #PBS -N
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Simultaneous profile measurements of medium- and high-Z impurity concentrations (nZ/ne) , Te , ΔZeff and n e2Zeff in MCF plasmas from multi-energy x-rays
NASA Astrophysics Data System (ADS)
Maddox, Jacob; Delgado-Aparicio, Luis; Pablant, Novimir; Rutman, Max; Hill, Ken; Bitter, Manfred; Reinke, Matthew; Rice, John
2016-10-01
Novel energy resolved measurements of x-ray emissions were used to characterize impurity concentrations, electron temperature, and ΔZeff in a variety of Alcator C-Mod plasmas. A PILATUS2 detector programmed in a multi-energy configuration and used in a pinhole camera geometry provides the capability to function similar to a pulse height analyzer (PHA) but with full plasma profile views and sufficient spatial ( 1 cm), energy ( .5 keV), and temporal ( 10 ms) resolution. Each of the PILATUS2's 100k (487x195) pixels can be set to an energy threshold, which sorts x-ray emissions into energy bins by counting only photons with energy above the threshold energy. By setting every 13th pixel row to the same energy bin and the 12 interjacent pixel rows to different energy bins on the PILATUS2 detector gives 38 poloidal sightlines (487 rows/13 energy bins). The number of photons detected in each energy bin depends on (nZ/ne) , Te, and ne2Zeff, so that these plasma parameters can be extracted by fitting the data to an emission model, which includes free-free, free-bound, and bound-bound emissions from a De/H background plasma with perturbing medium and high-Z impurities, like intrinsic Mo, Fe, and Cu or injected W. Also, radial electron temperature profiles were measured during LHRF and ICRF and compared to Thomson scattering and ECE.
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Single-Cell-Genomics-Facilitated Read Binning of Candidate Phylum EM19 Genomes from Geothermal Spring Metagenomes.
PubMed
Becraft, Eric D; Dodsworth, Jeremy A; Murugapiran, Senthil K; Ohlsson, J Ingemar; Briggs, Brandon R; Kanbar, Jad; De Vlaminck, Iwijn; Quake, Stephen R; Dong, Hailiang; Hedlund, Brian P; Swingley, Wesley D
2016-02-15
The vast majority of microbial life remains uncatalogued due to the inability to cultivate these organisms in the laboratory. This "microbial dark matter" represents a substantial portion of the tree of life and of the populations that contribute to chemical cycling in many ecosystems. In this work, we leveraged an existing single-cell genomic data set representing the candidate bacterial phylum "Calescamantes" (EM19) to calibrate machine learning algorithms and define metagenomic bins directly from pyrosequencing reads derived from Great Boiling Spring in the U.S. Great Basin. Compared to other assembly-based methods, taxonomic binning with a read-based machine learning approach yielded final assemblies with the highest predicted genome completeness of any method tested. Read-first binning subsequently was used to extract Calescamantes bins from all metagenomes with abundant Calescamantes populations, including metagenomes from Octopus Spring and Bison Pool in Yellowstone National Park and Gongxiaoshe Spring in Yunnan Province, China. Metabolic reconstruction suggests that Calescamantes are heterotrophic, facultative anaerobes, which can utilize oxidized nitrogen sources as terminal electron acceptors for respiration in the absence of oxygen and use proteins as their primary carbon source. Despite their phylogenetic divergence, the geographically separate Calescamantes populations were highly similar in their predicted metabolic capabilities and core gene content, respiring O2, or oxidized nitrogen species for energy conservation in distant but chemically similar hot springs. Copyright © 2016, American Society for Microbiology. All Rights Reserved.
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Comparison of compostable bags and aerated bins with conventional storage systems to collect the organic fraction of municipal solid waste from homes. a Catalonia case study.
PubMed
Puyuelo, Belén; Colón, Joan; Martín, Patrícia; Sánchez, Antoni
2013-06-01
The separation of biowaste at home is key to improving, facilitating and reducing the operational costs of the treatment of organic municipal waste. The conventional method of collecting such waste and separating it at home is usually done by using a sealed bin with a plastic bag. The use of modern compostable bags is starting to be implemented in some European countries. These compostable bags are made of biodegradable polymers, often from renewable sources. In addition to compostable bags, a new model of bin is also promoted that has a perforated surface that, together with the compostable bag, makes the so-called "aerated system". In this study, different combinations of home collection systems have been systematically studied in the laboratory and at home. The results obtained quantitatively demonstrate that the aerated bin and compostable bag system combination is effective at improving the collection of biowaste without significant gaseous emissions and preparing the organic waste for further composting as concluded from the respiration indices. In terms of weight loss, temperature, gas emissions, respiration index and organic matter reduction, the best results were achieved with the aerated system. At the same time, a qualitative study of bin and bag combinations was carried in 100 homes in which more than 80% of the families participating preferred the aerated system. Copyright © 2013 Elsevier Ltd. All rights reserved.
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Constrained sampling experiments reveal principles of detection in natural scenes.
PubMed
Sebastian, Stephen; Abrams, Jared; Geisler, Wilson S
2017-07-11
A fundamental everyday visual task is to detect target objects within a background scene. Using relatively simple stimuli, vision science has identified several major factors that affect detection thresholds, including the luminance of the background, the contrast of the background, the spatial similarity of the background to the target, and uncertainty due to random variations in the properties of the background and in the amplitude of the target. Here we use an experimental approach based on constrained sampling from multidimensional histograms of natural stimuli, together with a theoretical analysis based on signal detection theory, to discover how these factors affect detection in natural scenes. We sorted a large collection of natural image backgrounds into multidimensional histograms, where each bin corresponds to a particular luminance, contrast, and similarity. Detection thresholds were measured for a subset of bins spanning the space, where a natural background was randomly sampled from a bin on each trial. In low-uncertainty conditions, both the background bin and the amplitude of the target were fixed, and, in high-uncertainty conditions, they varied randomly on each trial. We found that thresholds increase approximately linearly along all three dimensions and that detection accuracy is unaffected by background bin and target amplitude uncertainty. The results are predicted from first principles by a normalized matched-template detector, where the dynamic normalizing gain factor follows directly from the statistical properties of the natural backgrounds. The results provide an explanation for classic laws of psychophysics and their underlying neural mechanisms.
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DNA barcodes of the native ray-finned fishes in Taiwan.
PubMed
Chang, Chia-Hao; Shao, Kwang-Tsao; Lin, Han-Yang; Chiu, Yung-Chieh; Lee, Mao-Ying; Liu, Shih-Hui; Lin, Pai-Lei
2017-07-01
Species identification based on the DNA sequence of a fragment of the cytochrome c oxidase subunit I gene in the mitochondrial genome, DNA barcoding, is widely applied to assist in sustainable exploitation of fish resources and the protection of fish biodiversity. The aim of this study was to establish a reliable barcoding reference database of the native ray-finned fishes in Taiwan. A total of 2993 individuals, belonging to 1245 species within 637 genera, 184 families and 29 orders of ray-finned fishes and representing approximately 40% of the recorded ray-finned fishes in Taiwan, were PCR amplified at the barcode region and bidirectionally sequenced. The mean length of the 2993 barcodes is 549 bp. Mean congeneric K2P distance (15.24%) is approximately 10-fold higher than the mean conspecific one (1.51%), but approximately 1.4-fold less than the mean genetic distance between families (20.80%). The Barcode Index Number (BIN) discordance report shows that 2993 specimens represent 1275 BINs and, among them, 86 BINs are singletons, 570 BINs are taxonomically concordant, and the other 619 BINs are taxonomically discordant. Barcode gap analysis also revealed that more than 90% of the collected fishes in this study can be discriminated by DNA barcoding. Overall, the barcoding reference database established by this study reveals the need for taxonomic revisions and voucher specimen rechecks, in addition to assisting in the management of Taiwan's fish resources and diversity. © 2016 John Wiley & Sons Ltd.
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Odor volatiles associated with microflora in damp ventilated and non-ventilated bin-stored bulk wheat.
PubMed
Tuma, D; Sinha, R N; Muir, W E; Abramson, D
1989-05-01
Western hard red spring wheat, stored at 20 and 25% moisture contents for 10 months during 1985-86, was monitored for biotic and abiotic variables in 10 unheated bins in Winnipeg, Manitoba. The major odor volatiles identified were 3-methyl-1-butanol, 3-octanone and 1-octen-3-ol. The production of these volatiles was associated and correlated with microfloral infection. Ventilation, used for cooling and drying of grain, disrupted microfloral growth patterns and production of volatiles. The highest levels of 3-methyl-1-butanol occurred in 25% moisture content wheat infected with bacteria, Penicillium spp. and Fusarium spp. In non-ventilated (control) bins with 20% moisture content wheat, 3-methyl-1-butanol was correlated with infection by members of the Aspergillus glaucus group and bacteria. In control bins, 1-octen-3-ol production was correlated with infection of wheat of both moisture contents by Penicillium spp. The fungal species, isolated from damp bin-stored wheat and tested for production of odor volatiles on wheat substrate, included Alternaria alternata (Fr.) Keissler, Aspergillus repens (Corda) Saccardo, A. flavus Link ex Fries, A. versicolor (Vuill.) Tiraboschi, Penicillium chrysogenum Thom, P. cyclopium Westling, Fusarium moniliforme Sheldon, F. semitectum (Cooke) Sacc. In the laboratory, fungus-inoculated wheat produced 3-methyl-1-butanol; 3-octanone and 1-octen-3-ol were also produced, but less frequently. Two unidentified bacterial species isolated from damp wheat and inoculated on agar produced 3-methyl-1-butanol.
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Interrater reliability of Violence Risk Appraisal Guide scores provided in Canadian criminal proceedings.
PubMed
Edens, John F; Penson, Brittany N; Ruchensky, Jared R; Cox, Jennifer; Smith, Shannon Toney
2016-12-01
Published research suggests that most violence risk assessment tools have relatively high levels of interrater reliability, but recent evidence of inconsistent scores among forensic examiners in adversarial settings raises concerns about the "field reliability" of such measures. This study specifically examined the reliability of Violence Risk Appraisal Guide (VRAG) scores in Canadian criminal cases identified in the legal database, LexisNexis. Over 250 reported cases were located that made mention of the VRAG, with 42 of these cases containing 2 or more scores that could be submitted to interrater reliability analyses. Overall, scores were skewed toward higher risk categories. The intraclass correlation (ICCA1) was .66, with pairs of forensic examiners placing defendants into the same VRAG risk "bin" in 68% of the cases. For categorical risk statements (i.e., low, moderate, high), examiners provided converging assessment results in most instances (86%). In terms of potential predictors of rater disagreement, there was no evidence for adversarial allegiance in our sample. Rater disagreement in the scoring of 1 VRAG item (Psychopathy Checklist-Revised; Hare, 2003), however, strongly predicted rater disagreement in the scoring of the VRAG (r = .58). (PsycINFO Database Record (c) 2016 APA, all rights reserved).
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Visual analysis of trash bin processing on garbage trucks in low resolution video
NASA Astrophysics Data System (ADS)
Sidla, Oliver; Loibner, Gernot
2015-03-01
We present a system for trash can detection and counting from a camera which is mounted on a garbage collection truck. A working prototype has been successfully implemented and tested with several hours of real-world video. The detection pipeline consists of HOG detectors for two trash can sizes, and meanshift tracking and low level image processing for the analysis of the garbage disposal process. Considering the harsh environment and unfavorable imaging conditions, the process works already good enough so that very useful measurements from video data can be extracted. The false positive/false negative rate of the full processing pipeline is about 5-6% at fully automatic operation. Video data of a full day (about 8 hrs) can be processed in about 30 minutes on a standard PC.
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Toward zero waste: Composting and recycling for sustainable venue based events
DOE Office of Scientific and Technical Information (OSTI.GOV)
Hottle, Troy A., E-mail: troy.hottle@asu.edu; Bilec, Melissa M., E-mail: mbilec@pitt.edu; Brown, Nicholas R., E-mail: nick.brown@asu.edu
Highlights: • Venues have billions of customers per year contributing to waste generation. • Waste audits of four university baseball games were conducted to assess venue waste. • Seven scenarios including composting were modeled using EPA’s WARM. • Findings demonstrate tradeoffs between emissions, energy, and landfill avoidance. • Sustainability of handling depends on efficacy of collection and treatment impacts. - Abstract: This study evaluated seven different waste management strategies for venue-based events and characterized the impacts of event waste management via waste audits and the Waste Reduction Model (WARM). The seven waste management scenarios included traditional waste handling methods (e.g.more » recycle and landfill) and management of the waste stream via composting, including purchasing where only compostable food service items were used during the events. Waste audits were conducted at four Arizona State University (ASU) baseball games, including a three game series. The findings demonstrate a tradeoff among CO{sub 2} equivalent emissions, energy use, and landfill diversion rates. Of the seven waste management scenarios assessed, the recycling scenarios provide the greatest reductions in CO{sub 2} eq. emissions and energy use because of the retention of high value materials but are compounded by the difficulty in managing a two or three bin collection system. The compost only scenario achieves complete landfill diversion but does not perform as well with respect to CO{sub 2} eq. emissions or energy. The three game series was used to test the impact of staffed bins on contamination rates; the first game served as a baseline, the second game employed staffed bins, and the third game had non staffed bins to determine the effect of staffing on contamination rates. Contamination rates in both the recycling and compost bins were tracked throughout the series. Contamination rates were reduced from 34% in the first game to 11% on the second night (with the staffed bins) and 23% contamination rates at the third game.« less
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Dark Energy Survey Year 1 Results: redshift distributions of the weak-lensing source galaxies
NASA Astrophysics Data System (ADS)
Hoyle, B.; Gruen, D.; Bernstein, G. M.; Rau, M. M.; De Vicente, J.; Hartley, W. G.; Gaztanaga, E.; DeRose, J.; Troxel, M. A.; Davis, C.; Alarcon, A.; MacCrann, N.; Prat, J.; Sánchez, C.; Sheldon, E.; Wechsler, R. H.; Asorey, J.; Becker, M. R.; Bonnett, C.; Carnero Rosell, A.; Carollo, D.; Carrasco Kind, M.; Castander, F. J.; Cawthon, R.; Chang, C.; Childress, M.; Davis, T. M.; Drlica-Wagner, A.; Gatti, M.; Glazebrook, K.; Gschwend, J.; Hinton, S. R.; Hoormann, J. K.; Kim, A. G.; King, A.; Kuehn, K.; Lewis, G.; Lidman, C.; Lin, H.; Macaulay, E.; Maia, M. A. G.; Martini, P.; Mudd, D.; Möller, A.; Nichol, R. C.; Ogando, R. L. C.; Rollins, R. P.; Roodman, A.; Ross, A. J.; Rozo, E.; Rykoff, E. S.; Samuroff, S.; Sevilla-Noarbe, I.; Sharp, R.; Sommer, N. E.; Tucker, B. E.; Uddin, S. A.; Varga, T. N.; Vielzeuf, P.; Yuan, F.; Zhang, B.; Abbott, T. M. C.; Abdalla, F. B.; Allam, S.; Annis, J.; Bechtol, K.; Benoit-Lévy, A.; Bertin, E.; Brooks, D.; Buckley-Geer, E.; Burke, D. L.; Busha, M. T.; Capozzi, D.; Carretero, J.; Crocce, M.; D'Andrea, C. B.; da Costa, L. N.; DePoy, D. L.; Desai, S.; Diehl, H. T.; Doel, P.; Eifler, T. F.; Estrada, J.; Evrard, A. E.; Fernandez, E.; Flaugher, B.; Fosalba, P.; Frieman, J.; García-Bellido, J.; Gerdes, D. W.; Giannantonio, T.; Goldstein, D. A.; Gruendl, R. A.; Gutierrez, G.; Honscheid, K.; James, D. J.; Jarvis, M.; Jeltema, T.; Johnson, M. W. G.; Johnson, M. D.; Kirk, D.; Krause, E.; Kuhlmann, S.; Kuropatkin, N.; Lahav, O.; Li, T. S.; Lima, M.; March, M.; Marshall, J. L.; Melchior, P.; Menanteau, F.; Miquel, R.; Nord, B.; O'Neill, C. R.; Plazas, A. A.; Romer, A. K.; Sako, M.; Sanchez, E.; Santiago, B.; Scarpine, V.; Schindler, R.; Schubnell, M.; Smith, M.; Smith, R. C.; Soares-Santos, M.; Sobreira, F.; Suchyta, E.; Swanson, M. E. C.; Tarle, G.; Thomas, D.; Tucker, D. L.; Vikram, V.; Walker, A. R.; Weller, J.; Wester, W.; Wolf, R. C.; Yanny, B.; Zuntz, J.
2018-07-01
We describe the derivation and validation of redshift distribution estimates and their uncertainties for the populations of galaxies used as weak-lensing sources in the Dark Energy Survey (DES) Year 1 cosmological analyses. The Bayesian Photometric Redshift (BPZ) code is used to assign galaxies to four redshift bins between z ≈ 0.2 and ≈1.3, and to produce initial estimates of the lensing-weighted redshift distributions n^i_PZ(z)∝ dn^i/dz for members of bin i. Accurate determination of cosmological parameters depends critically on knowledge of ni, but is insensitive to bin assignments or redshift errors for individual galaxies. The cosmological analyses allow for shifts n^i(z)=n^i_PZ(z-Δ z^i) to correct the mean redshift of ni(z) for biases in n^i_PZ. The Δzi are constrained by comparison of independently estimated 30-band photometric redshifts of galaxies in the Cosmic Evolution Survey (COSMOS) field to BPZ estimates made from the DES griz fluxes, for a sample matched in fluxes, pre-seeing size, and lensing weight to the DES weak-lensing sources. In companion papers, the Δzi of the three lowest redshift bins are further constrained by the angular clustering of the source galaxies around red galaxies with secure photometric redshifts at 0.15 < z < 0.9. This paper details the BPZ and COSMOS procedures, and demonstrates that the cosmological inference is insensitive to details of the ni(z) beyond the choice of Δzi. The clustering and COSMOS validation methods produce consistent estimates of Δzi in the bins where both can be applied, with combined uncertainties of σ_{Δ z^i}=0.015, 0.013, 0.011, and 0.022 in the four bins. Repeating the photo-z procedure instead using the Directional Neighbourhood Fitting algorithm, or using the ni(z) estimated from the matched sample in COSMOS, yields no discernible difference in cosmological inferences.
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Receptor protein of Lysinibacillus sphaericus mosquito-larvicidal toxin displays amylomaltase activity.
PubMed
Sharma, Mahima; Gupta, Gagan D; Kumar, Vinay
2018-02-01
The activated binary toxin (BinAB) from Lysinibacillus sphaericus binds to surface receptor protein (Cqm1) on the midgut cell membrane and kills Culex quinquefasciatus larvae on internalization. Cqm1 is attached to cells via a glycosyl-phosphatidylinositol (GPI) anchor. It has been classified as a member of glycoside hydrolase family 13 of the CAZy database. Here, we report characterization of the ordered domain (residues 23-560) of Cqm1. Gene expressing Cqm1 of BinAB susceptible mosquito was chemically synthesized and the protein was purified using E. coli expression system. Values for the Michaelis-Menten kinetics parameters towards 4-nitrophenyl α-D-glucopyranoside (α-pNPG) substrate were estimated to be 0.44 mM (Km) and 1.9 s -1 (kcat). Thin layer chromatography experiments established Cqm1 as α-glucosidase competent to cleave α-1,4-glycosidic bonds of maltose and maltotriose with high glycosyltransferase activity to form glucose-oligomers. The observed hydrolysis and synthesis of glucose-oligomers is consistent with open and accessible active-site in the structural model. The protein also hydrolyses glycogen and sucrose. These activities suggest that Cqm1 may be involved in carbohydrate metabolism in mosquitoes. Further, toxic BinA component does not inhibit α-glucosidase activity of Cqm1, while BinB reduced the activity by nearly 50%. The surface plasmon resonance study reveals strong binding of BinB with Cqm1 (Kd, 9.8 nM). BinA interaction with Cqm1 however, is 1000-fold weaker. Notably the estimated Kd values match well with dissociation constants reported earlier with larvae brush border membrane fractions. The Cqm1 protein forms a stable dimer that is consistent with its apical localization in lipid rafts. Its melting temperature (T m ) as observed by thermofluor-shift assay is 51.5 °C and Ca 2+ provides structural stability to the protein. Copyright © 2017 Elsevier Ltd. All rights reserved.
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Dark Energy Survey Year 1 Results: Redshift distributions of the weak lensing source galaxies
NASA Astrophysics Data System (ADS)
Hoyle, B.; Gruen, D.; Bernstein, G. M.; Rau, M. M.; De Vicente, J.; Hartley, W. G.; Gaztanaga, E.; DeRose, J.; Troxel, M. A.; Davis, C.; Alarcon, A.; MacCrann, N.; Prat, J.; Sánchez, C.; Sheldon, E.; Wechsler, R. H.; Asorey, J.; Becker, M. R.; Bonnett, C.; Carnero Rosell, A.; Carollo, D.; Carrasco Kind, M.; Castander, F. J.; Cawthon, R.; Chang, C.; Childress, M.; Davis, T. M.; Drlica-Wagner, A.; Gatti, M.; Glazebrook, K.; Gschwend, J.; Hinton, S. R.; Hoormann, J. K.; Kim, A. G.; King, A.; Kuehn, K.; Lewis, G.; Lidman, C.; Lin, H.; Macaulay, E.; Maia, M. A. G.; Martini, P.; Mudd, D.; Möller, A.; Nichol, R. C.; Ogando, R. L. C.; Rollins, R. P.; Roodman, A.; Ross, A. J.; Rozo, E.; Rykoff, E. S.; Samuroff, S.; Sevilla-Noarbe, I.; Sharp, R.; Sommer, N. E.; Tucker, B. E.; Uddin, S. A.; Varga, T. N.; Vielzeuf, P.; Yuan, F.; Zhang, B.; Abbott, T. M. C.; Abdalla, F. B.; Allam, S.; Annis, J.; Bechtol, K.; Benoit-Lévy, A.; Bertin, E.; Brooks, D.; Buckley-Geer, E.; Burke, D. L.; Busha, M. T.; Capozzi, D.; Carretero, J.; Crocce, M.; D'Andrea, C. B.; da Costa, L. N.; DePoy, D. L.; Desai, S.; Diehl, H. T.; Doel, P.; Eifler, T. F.; Estrada, J.; Evrard, A. E.; Fernandez, E.; Flaugher, B.; Fosalba, P.; Frieman, J.; García-Bellido, J.; Gerdes, D. W.; Giannantonio, T.; Goldstein, D. A.; Gruendl, R. A.; Gutierrez, G.; Honscheid, K.; James, D. J.; Jarvis, M.; Jeltema, T.; Johnson, M. W. G.; Johnson, M. D.; Kirk, D.; Krause, E.; Kuhlmann, S.; Kuropatkin, N.; Lahav, O.; Li, T. S.; Lima, M.; March, M.; Marshall, J. L.; Melchior, P.; Menanteau, F.; Miquel, R.; Nord, B.; O'Neill, C. R.; Plazas, A. A.; Romer, A. K.; Sako, M.; Sanchez, E.; Santiago, B.; Scarpine, V.; Schindler, R.; Schubnell, M.; Smith, M.; Smith, R. C.; Soares-Santos, M.; Sobreira, F.; Suchyta, E.; Swanson, M. E. C.; Tarle, G.; Thomas, D.; Tucker, D. L.; Vikram, V.; Walker, A. R.; Weller, J.; Wester, W.; Wolf, R. C.; Yanny, B.; Zuntz, J.; DES Collaboration
2018-04-01
We describe the derivation and validation of redshift distribution estimates and their uncertainties for the populations of galaxies used as weak lensing sources in the Dark Energy Survey (DES) Year 1 cosmological analyses. The Bayesian Photometric Redshift (BPZ) code is used to assign galaxies to four redshift bins between z ≈ 0.2 and ≈1.3, and to produce initial estimates of the lensing-weighted redshift distributions n^i_PZ(z)∝ dn^i/dz for members of bin i. Accurate determination of cosmological parameters depends critically on knowledge of ni but is insensitive to bin assignments or redshift errors for individual galaxies. The cosmological analyses allow for shifts n^i(z)=n^i_PZ(z-Δ z^i) to correct the mean redshift of ni(z) for biases in n^i_PZ. The Δzi are constrained by comparison of independently estimated 30-band photometric redshifts of galaxies in the COSMOS field to BPZ estimates made from the DES griz fluxes, for a sample matched in fluxes, pre-seeing size, and lensing weight to the DES weak-lensing sources. In companion papers, the Δzi of the three lowest redshift bins are further constrained by the angular clustering of the source galaxies around red galaxies with secure photometric redshifts at 0.15 < z < 0.9. This paper details the BPZ and COSMOS procedures, and demonstrates that the cosmological inference is insensitive to details of the ni(z) beyond the choice of Δzi. The clustering and COSMOS validation methods produce consistent estimates of Δzi in the bins where both can be applied, with combined uncertainties of σ _{Δ z^i}=0.015, 0.013, 0.011, and 0.022 in the four bins. Repeating the photo-z proceedure instead using the Directional Neighborhood Fitting (DNF) algorithm, or using the ni(z) estimated from the matched sample in COSMOS, yields no discernible difference in cosmological inferences.
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Fully integrated sub 100ps photon counting platform
NASA Astrophysics Data System (ADS)
Buckley, S. J.; Bellis, S. J.; Rosinger, P.; Jackson, J. C.
2007-02-01
Current state of the art high resolution counting modules, specifically designed for high timing resolution applications, are largely based on a computer card format. This has tended to result in a costly solution that is restricted to the computer it resides in. We describe a four channel timing module that interfaces to a computer via a USB port and operates with a resolution of less than 100 picoseconds. The core design of the system is an advanced field programmable gate array (FPGA) interfacing to a precision time interval measurement module, mass memory block and a high speed USB 2.0 serial data port. The FPGA design allows the module to operate in a number of modes allowing both continuous recording of photon events (time-tagging) and repetitive time binning. In time-tag mode the system reports, for each photon event, the high resolution time along with the chronological time (macro time) and the channel ID. The time-tags are uploaded in real time to a host computer via a high speed USB port allowing continuous storage to computer memory of up to 4 millions photons per second. In time-bin mode, binning is carried out with count rates up to 10 million photons per second. Each curve resides in a block of 128,000 time-bins each with a resolution programmable down to less than 100 picoseconds. Each bin has a limit of 65535 hits allowing autonomous curve recording until a bin reaches the maximum count or the system is commanded to halt. Due to the large memory storage, several curves/experiments can be stored in the system prior to uploading to the host computer for analysis. This makes this module ideal for integration into high timing resolution specific applications such as laser ranging and fluorescence lifetime imaging using techniques such as time correlated single photon counting (TCSPC).
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The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments
PubMed Central
2009-01-01
Background The characterisation, or binning, of metagenome fragments is an important first step to further downstream analysis of microbial consortia. Here, we propose a one-dimensional signature, OFDEG, derived from the oligonucleotide frequency profile of a DNA sequence, and show that it is possible to obtain a meaningful phylogenetic signal for relatively short DNA sequences. The one-dimensional signal is essentially a compact representation of higher dimensional feature spaces of greater complexity and is intended to improve on the tetranucleotide frequency feature space preferred by current compositional binning methods. Results We compare the fidelity of OFDEG against tetranucleotide frequency in both an unsupervised and semi-supervised setting on simulated metagenome benchmark data. Four tests were conducted using assembler output of Arachne and phrap, and for each, performance was evaluated on contigs which are greater than or equal to 8 kbp in length and contigs which are composed of at least 10 reads. Using both G-C content in conjunction with OFDEG gave an average accuracy of 96.75% (semi-supervised) and 95.19% (unsupervised), versus 94.25% (semi-supervised) and 82.35% (unsupervised) for tetranucleotide frequency. Conclusion We have presented an observation of an alternative characteristic of DNA sequences. The proposed feature representation has proven to be more beneficial than the existing tetranucleotide frequency space to the metagenome binning problem. We do note, however, that our observation of OFDEG deserves further anlaysis and investigation. Unsupervised clustering revealed OFDEG related features performed better than standard tetranucleotide frequency in representing a relevant organism specific signal. Further improvement in binning accuracy is given by semi-supervised classification using OFDEG. The emphasis on a feature-driven, bottom-up approach to the problem of binning reveals promising avenues for future development of techniques to characterise short environmental sequences without bias toward cultivable organisms. PMID:19958473
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Bright high z SnIa: A challenge for ΛCDM
NASA Astrophysics Data System (ADS)
Perivolaropoulos, L.; Shafieloo, A.
2009-06-01
It has recently been pointed out by Kowalski et. al. [Astrophys. J. 686, 749 (2008).ASJOAB0004-637X10.1086/589937] that there is “an unexpected brightness of the SnIa data at z>1.” We quantify this statement by constructing a new statistic which is applicable directly on the type Ia supernova (SnIa) distance moduli. This statistic is designed to pick up systematic brightness trends of SnIa data points with respect to a best fit cosmological model at high redshifts. It is based on binning the normalized differences between the SnIa distance moduli and the corresponding best fit values in the context of a specific cosmological model (e.g. ΛCDM). These differences are normalized by the standard errors of the observed distance moduli. We then focus on the highest redshift bin and extend its size toward lower redshifts until the binned normalized difference (BND) changes sign (crosses 0) at a redshift zc (bin size Nc). The bin size Nc of this crossing (the statistical variable) is then compared with the corresponding crossing bin size Nmc for Monte Carlo data realizations based on the best fit model. We find that the crossing bin size Nc obtained from the Union08 and Gold06 data with respect to the best fit ΛCDM model is anomalously large compared to Nmc of the corresponding Monte Carlo data sets obtained from the best fit ΛCDM in each case. In particular, only 2.2% of the Monte Carlo ΛCDM data sets are consistent with the Gold06 value of Nc while the corresponding probability for the Union08 value of Nc is 5.3%. Thus, according to this statistic, the probability that the high redshift brightness bias of the Union08 and Gold06 data sets is realized in the context of a (w0,w1)=(-1,0) model (ΛCDM cosmology) is less than 6%. The corresponding realization probability in the context of a (w0,w1)=(-1.4,2) model is more than 30% for both the Union08 and the Gold06 data sets indicating a much better consistency for this model with respect to the BND statistic.
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SU-F-J-136: Impact of Audiovisual Biofeedback On Interfraction Motion Over a Course of Liver Cancer Stereotactic Body Radiotherapy
DOE Office of Scientific and Technical Information (OSTI.GOV)
Pollock, S; Tse, R; Martin, D
Purpose: In abdominal radiotherapy inconsistent interfraction respiratory motion can result in deviations during treatment from what was planned in terms of target position and motion. Audiovisual biofeedback (AVB) is an interactive respiratory guide that produces a guiding interface that the patient follows over a course of radiotherapy to facilitate regular respiratory motion. This study assessed the impact of AVB on interfraction motion consistency over a course of liver cancer SBRT. Methods: Five liver cancer patients have been recruited into this study, 3 followed AVB over their course of SBRT and 2 were free breathing (FB). Respiratory signals from the Varianmore » RPM were obtained during 4DCT and each treatment fraction. Respiratory signals were organized into 10 respiratory bins, and interfraction consistency was quantified by the difference between each treatment fraction respiratory bin and each respiratory bin from 4DCT. Interfraction consistency was considered as both the relative difference (as a percentage) and absolute difference (in centimeters) between treatment respiratory bins and 4DCT respiratory bins. Results: The relative difference between 4DCT and treatment respiratory bins was 22 ± 16% for FB, and 15 ± 10% for AVB, an improvement of 32% (p < 0.001) with AVB. The absolute difference between 4DCT and treatment respiratory bins was 0.15 ± 0.10 cm for FB, and 0.14 ± 0.13 cm for AVB, an improvement of 4% (p = 0.6) with AVB. Conclusion: This was the first study to compare the impact of AVB breathing guidance on interfraction motion consistency over a course of radiotherapy. AVB demonstrated to significantly reduce the relative difference between 4DCT and treatment respiratory motion, but the absolute differences were comparable, largely due to one AVB patient exhibiting a larger amplitude than the other patients. This study demonstrates the potential benefit of AVB in reducing motion variations during treatment from what was planned. Paul Keall, Sean Pollock, Ricky OBrien and Kuldeep Makhija are shareholders of Respiratory Innovations, an Australian company that is developing a device to improve breathing stability. No funding or support was provided by Respiratory Innovations. Paul Keall is one of the inventors of US patent # 7955270.« less
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Detecting the contagion effect in mass killings; a constructive example of the statistical advantages of unbinned likelihood methods.
PubMed
Towers, Sherry; Mubayi, Anuj; Castillo-Chavez, Carlos
2018-01-01
When attempting to statistically distinguish between a null and an alternative hypothesis, many researchers in the life and social sciences turn to binned statistical analysis methods, or methods that are simply based on the moments of a distribution (such as the mean, and variance). These methods have the advantage of simplicity of implementation, and simplicity of explanation. However, when null and alternative hypotheses manifest themselves in subtle differences in patterns in the data, binned analysis methods may be insensitive to these differences, and researchers may erroneously fail to reject the null hypothesis when in fact more sensitive statistical analysis methods might produce a different result when the null hypothesis is actually false. Here, with a focus on two recent conflicting studies of contagion in mass killings as instructive examples, we discuss how the use of unbinned likelihood methods makes optimal use of the information in the data; a fact that has been long known in statistical theory, but perhaps is not as widely appreciated amongst general researchers in the life and social sciences. In 2015, Towers et al published a paper that quantified the long-suspected contagion effect in mass killings. However, in 2017, Lankford & Tomek subsequently published a paper, based upon the same data, that claimed to contradict the results of the earlier study. The former used unbinned likelihood methods, and the latter used binned methods, and comparison of distribution moments. Using these analyses, we also discuss how visualization of the data can aid in determination of the most appropriate statistical analysis methods to distinguish between a null and alternate hypothesis. We also discuss the importance of assessment of the robustness of analysis results to methodological assumptions made (for example, arbitrary choices of number of bins and bin widths when using binned methods); an issue that is widely overlooked in the literature, but is critical to analysis reproducibility and robustness. When an analysis cannot distinguish between a null and alternate hypothesis, care must be taken to ensure that the analysis methodology itself maximizes the use of information in the data that can distinguish between the two hypotheses. The use of binned methods by Lankford & Tomek (2017), that examined how many mass killings fell within a 14 day window from a previous mass killing, substantially reduced the sensitivity of their analysis to contagion effects. The unbinned likelihood methods used by Towers et al (2015) did not suffer from this problem. While a binned analysis might be favorable for simplicity and clarity of presentation, unbinned likelihood methods are preferable when effects might be somewhat subtle.
