Productivity and nutrient cycling in bioenergy cropping systems

NASA Astrophysics Data System (ADS)

Heggenstaller, Andrew Howard

One of the greatest obstacles confronting large-scale biomass production for energy applications is the development of cropping systems that balance the need for increased productive capacity with the maintenance of other critical ecosystem functions including nutrient cycling and retention. To address questions of productivity and nutrient dynamics in bioenergy cropping systems, we conducted two sets of field experiments during 2005-2007, investigating annual and perennial cropping systems designed to generate biomass energy feedstocks. In the first experiment we evaluated productivity and crop and soil nutrient dynamics in three prototypical bioenergy double-crop systems, and in a conventionally managed sole-crop corn system. Double-cropping systems included fall-seeded forage triticale (x Triticosecale Wittmack), succeeded by one of three summer-adapted crops: corn (Zea mays L.), sorghum-sudangrass [Sorghum bicolor (L.) Moench], or sunn hemp (Crotalaria juncea L.). Total dry matter production was greater for triticale/corn and triticale/sorghum-sudangrass compared to sole-crop corn. Functional growth analysis revealed that photosynthetic duration was more important than photosynthetic efficiency in determining biomass productivity of sole-crop corn and double-crop triticale/corn, and that greater yield in the tiritcale/corn system was the outcome of photosynthesis occurring over an extended duration. Increased growth duration in double-crop systems was also associated with reductions in potentially leachable soil nitrogen relative to sole-crop corn. However, nutrient removal in harvested biomass was also greater in the double-crop systems, indicating that over the long-term, double-cropping would mandate increased fertilizer inputs. In a second experiment we assessed the effects of N fertilization on biomass and nutrient partitioning between aboveground and belowground crop components, and on carbon storage by four perennial, warm-season grasses: big bluestem (Andropogon geradii Vitman), switchgrass (Panicum virgatum L.), indiangrass [ Sorghastrum nutans (L.) Nash], and eastern gamagrass (Tripsacum dactyloides L.). Generally, the optimum rate of fertilization for biomass yield by the grasses was 140 kg N ha-1. Nitrogen inputs also had pronounced but grass-specific effects on biomass and nutrient partitioning, and on carbon storage. For big bluestem and switchgrass, 140 kg N ha -1. maximized root biomass, favored allocation of nutrients to roots over shoots, and led to net increases in carbon storage over the study duration. In contrast, for indiangrass and eastern gamagrass, root biomass and root nutrient allocation were generally adversely affected by N fertilization and carbon storage increased only with 0 or 65 kg N ha-1. For all grasses, 220 kg N ha -1 tended to shift allocation of nutrients to shoots over roots and resulted in no net increase in carbon storage. Optimal nitrogen management strategies for perennial, warm-season grass energy crops should take into consideration the effects of N on biomass yield as well as factors such as nutrient and carbon balance that will also impact economic feasibility and environmental sustainability.

The effect of increased air humidity on fine root and rhizome biomass and turnover of silver birch forest ecosystem - a FAHM study.

NASA Astrophysics Data System (ADS)

Ostonen, I.; Kupper, P.; Sõber, J.; Aosaar, J.; Varik, M.; Lõhmus, K.

2012-04-01

A facility for free air humidity manipulation (FAHM) was established to investigate the effect of increased air humidity on belowground biomass and turnover in silver birch (Betula pendula Roth.) forest ecosystems with respect to rising air humidity predicted for Northern Europe. Fine root and rhizomes are short-lived and recognized as the most important component contributing to below-ground C fluxes in forests. The FAHM system enables air relative humidity to be increased on average 7 units (%) over the ambient level during mist fumigation. The experimental site contains humidified (H) and control (C) plots; each plot contains sectors with diverse "forest" understory and early successional grasses. The trees were planted in 2006, humidification started in spring 2008, and soil cores to study fine root and rhizome biomass and turnover were taken in 2007, 2009 and 2010. In July 2009, total fine root and rhizome biomass was 8 tons per ha in C and 16 tons per ha in H plots. The roots of understory formed 86% in C and 93% H plots, respectively. Our preliminary data suggest that the increased humidity affected more the roots of understory plants: fine root and rhizome biomass and production increased approximately twice by increasing air humidity. However, the tendency was similar for fine root biomass and production of silver birch. Fine root turnover speeded up for both silver birch and understory roots in H plots. Hence, changes in air humidity can significantly affect forest carbon cycling.

Analysis of tomato plasma membrane H(+)-ATPase gene family suggests a mycorrhiza-mediated regulatory mechanism conserved in diverse plant species.

PubMed

Liu, Junli; Liu, Jianjian; Chen, Aiqun; Ji, Minjie; Chen, Jiadong; Yang, Xiaofeng; Gu, Mian; Qu, Hongye; Xu, Guohua

2016-10-01

In plants, the plasma membrane H(+)-ATPase (HA) is considered to play a crucial role in regulating plant growth and respoding to environment stresses. Multiple paralogous genes encoding different isozymes of HA have been identified and characterized in several model plants, while limited information of the HA gene family is available to date for tomato. Here, we describe the molecular and expression features of eight HA-encoding genes (SlHA1-8) from tomato. All these genes are interrupted by multiple introns with conserved positions. SlHA1, 2, and 4 were widely expressed in all tissues, while SlHA5, 6, and 7 were almost only expressed in flowers. SlHA8, the transcripts of which were barely detectable under normal or nutrient-/salt-stress growth conditions, was strongly activated in arbuscular mycorrhizal (AM) fungal-colonized roots. Extreme lack of SlHA8 expression in M161, a mutant defective to AM fungal colonization, provided genetic evidence towards the dependence of its expression on AM symbiosis. A 1521-bp SlHA8 promoter could direct the GUS reporter expression specifically in colonized cells of transgenic tobacco, soybean, and rice mycorrhizal roots. Promoter deletion assay revealed a 223-bp promoter fragment of SlHA8 containing a variant of AM-specific cis-element MYCS (vMYCS) sufficient to confer the AM-induced activity. Targeted deletion of this motif in the corresponding promoter region causes complete abolishment of GUS staining in mycorrhizal roots. Together, these results lend cogent evidence towards the evolutionary conservation of a potential regulatory mechanism mediating the activation of AM-responsive HA genes in diverse mycorrhizal plant species.

Effects of Nitrogen and Desferal Treatments on CROTALARIA's (Crotalaria juncea Roth) Biomass Production

NASA Astrophysics Data System (ADS)

László Phd, M., ,, Dr.

2009-04-01

Presently sustainable agriculture is vital to achieving food security poverty alleviation and environmental protection because land degradation and desertification has occurred in all the world over cutting across a broad spectrum of contrasts in climate, ecosystem types, land uses and socio/economic settings. For this reason improving integrated soil fertility management is appreciationed and has become a major issue of concern on the development plant nutrition and plant production agendas. On plant nutrition level mineral macronutrients so nitrogen and chelating agents of different microelements so Desferal- deferoxamin-methansulfonic are essential for plant growth and development. Crotalari juncea L. is a well-known nutrient indicator fodder and green manure crop with a high yield potential. Field experiment was carried out on a chernozem meadow soil (Kunság- region of Hungary, Kunmadaras) in partly of experiment series (6 years) in 2001. The ploughed layer of region soils contained with about 2.6-3.4% humus and 40-42% clay, had a humus stability index of 0.9-2.5 by Márton (1997), pH (H2O) of 6.5-7.7, pH (KCl) of 5.3-6.8, y1 of 6.7-13.3. The topsoil was poorly supplied with all five macronutrients (N-NO3 1 mg 100 g-1, AL-soluble P2O5 14 mg 100 g-1, AL-K2O 36 mg 100 g-1, Ca 330 mg 100 g-1, Mg 43 mg 100 g-1) and with all four micronutrients (0.5m HNO3 soluble Cu 1 mg kg-1, Zn 1 mg kg-1, Mn 9 mg kg-1, Fe 80 mg kg-1) according to soil analysis. The groundwater depth was 2-3 m. Nitrogen x Desferal (Novartis Pharma AG Basie, Switzerland, Suiza 500mg) x Genotype (Brazíl-EMBRAPA/CNPH, Brazilia-DF, India-University of Agricultural Sciences, Bangalore) x Time experiment involved 4Nx2Dx2Gx3T=48 treatments in 3 replications giving a total of 144 plots. The N levels were 0, 100, 200 and 300 kg ha-1 year-1, and desferal levels 0 and 20 kg ha-1 year-1 with a 100 kg ha-1 year-1 P2O5 and 120 kg ha-1 year-1 K2O basic fertilisation. The plot size had an area of 4x2=8 m2 with 920-920 individual plants. Experimental datas were estimated by MANOVA of SPSS. The most important results can be summarised as follows: a., As the N supplies improved the root length (cm), plant height (cm), mean scores (1-5), fresh root weight (t ha-1), green straw+leaf weight (t ha-1), total green biomass weight (t ha-1), air dry root weight (t ha-1), air dry straw+leaf weight (t ha-1), and total air dry biomass weight (t ha-1) increased with an 1.4, 1.3, 4.3, 1.3, 1.8, 1.6, 2.1, 1.9 and 2.0 times compared to the control by the start of flowering. b., As the N doses rised the root length, plant height, mean scores, fresh root weight, green straw+leaf weight, total green biomass weight, air dry root weight, air dry straw+leaf weight and total air dry biomass weight reaching 34.3 cm, 168.0 cm, 4.3, 14.8 t ha-1, 51.7 t ha-1, 66.5 t ha-1, 7.4 t ha-1, 16.5 t ha-1 and 23.9 t ha-1. c., About three-fourth of the total green biomass and total air dry biomass production at harvest was given by the straw+leaf yield, which ranged between 29.0-51.7 t ha-1 and 8.7-16.5 t ha-1, depending on the N-treatment applied. d., The root length, plant height, mean scores, fresh root weight, green straw+leaf weight, total green biomass weight, air dry root weight, air dry straw+leaf weight and total air dry biomass weight was increased in average with an 14, 15, 21, 157, 30, 63, 102, 28 and 51% by N+Desferal treatments compared to mean of N doses effects. e., By N+Desferal treatments the root length, plant height, mean scores, fresh root weight, green straw+leaf weight, total green biomass weight, air dry root weight, air dry straw+leaf weight and total air dry biomass weight achieved 37.0 cm, 173.3 cm, 4.3, 37.8 t ha-1, 64.4 t ha-1, 102.2 t ha-1, 13.8 t ha-1, 19.3 t ha-1 and 33.1 t ha-1. f., Approximately two-third of the total green biomass and total air dry biomass production at harvest was given by the straw+leaf yield, which ranged between 44.7-64.4 t ha-1 and 24.1-33.1 t ha-1, depending on the N+Desferal treatment rates. g. On the given soil the highest quantity of 300 kg ha-1 year-1 N mineral fertilizer + 20 kg ha-1 year-1 Desferal chelating agent seemed to give already over fertilization and lowered in its tendency mainly the total green biomass yield and verifiable the total air dry biomass yield. By experimental results can be summarised that we was able to increase with a great rate Crotalaria juncea L. total green biomass yield and total air dry biomass yield by N and Desferal treatments. As well as so we can show and offer our results to different sustainable farming managements with nutrition system of low, mean and high input in the next future. Keywords: nitrogen, desferal, crotalaria, soil fertility, sustainable agriculture management Introduction Presently sustainable agriculture is vital to achieving food security poverty alleviation and environmental protection because land degradation and desertification has occurred in all the world over cutting across a broad spectrum of contrasts in climate, ecosystem types, land uses and socio/economic settings. For this reason improving integrated soil fertility management is appreciationed and has become a major issue of concern on the development plant nutrition and plant production agendas. On plant nutrition level mineral macronutrients so nitrogen and chelating agents of different microelements so Desferal- deferoxamin-methansulfonic are essential for plant growth and development. Crotalari juncea L. is a well-known nutrient indicator fodder and green manure crop with a high yield potential. The complexity of the desertification phenomenon has drawn our attention to categorize, inventory, monitor and repair the condition of the land (Arnalds and Archer 1999). Therefore, farmers are constantly being subjected to soil fertility changes that are beyond their control on account of factors that affect the viability and profitability their farming enterprise. They must acquire the capacity to respond to these changing situations and opportunities in order to maximise production. Grower need to be helped to develop this capability by encouraging their innovations and by involving them in a learning process in which they are exposed to new knowledge and technologies. The functioning of soils and their ability to supply nutrients, store water, release greenhouse gases, modify pollutants, resist physical degradation and produce crops within a sustainable management system. Mineral fertilization is determined in the first place by the needs of plants for nutrients but due attention must also by given to soil process. Nitrogen is essential to the growth and reproduction of crops. It plays a major role in the development and functions of protoplasm, being an essential constituent of all proteins. Crotalaria has a high demand for nitrogen. The problem of the nitrogen nutrition in case of this plant is much more difficult than those of phosphatic or potassic nutrition because production is limited by nitrogen deficiency more often than by that of any other nutrient. The omission of no other element causes such a drastic decline in yield and growth. Nitrogen is therefore without question the most important fertilizer nutrient for this crop. The essential micronutrients -also called trace or minor elements- or elements taken up by plants in very much smaller amounts, are iron, boron, zinc, copper, manganese, molybdenum and chlorine. Deficiencies in the supply of these elements to crops may be due to their absence or scarcity in the soil or to their being present in the soil but unavailable because of certain soil conditions -in very calcareous or in overlimed soils, in very old acidic, leached soils etc. Each of these nutrient elements has a definite key function also within the plant. Some of these functions are still imperfectly understood. In many early studies on plant utilization of microelement chelated (for example Fe chelated) with a high stability constant in solution by various synthetic or natural chelates were assumed to be more efficient as micronutrient suppliers to plants than the uncelated micronutriens. Primary criterion for microelement complexes is a high complex stability. Various siderophores and synthetic chelates stability constants are well documented in many papers (Shenker at al. 1996). Desferal -chelating agent deferoxamin-methansulfonic- is a well know chelator with a high stability constant and micronutrient supplier potential to plant nutrition. Sunn hemp (Crotalaria juncea L.) is one of the earliest, important and most distinctly named animal fodder and green manure plant. There is one of the most widely grown crop throughout the tropics, subtropics and temperate climate conditions. It is grown in rotation with rice, maize, tobacco, cotton, sugar cane, pineapples, coffee, orchard and in other crops. It is characterized by its rapid growth and high biomass production potential of green (60 t ha-1) and dry (20 t ha-1) material (Kiyoko 1996). As a green manure for example has been the key element in the maintenance of soil organic matter content, of soil fertility (Márton 2001). Crop is ploughed in after 2 months when the plants begin to flower as it decomposes more rapidly at this stage. The mentioned above yields wich on decomposition may add 80-100 kg ha-1 of N to the soil. Materials and Methods Field experiment was carried out on a chernozem meadow soil (Kunság- region of Hungary, Kunmadaras) in partly of experiment series (6 years) in 2001. The ploughed layer of region soils contained with about 2.6-3.4% humus and 40-42% clay, had a humus stability index of 0.9-2.5 by Márton (1997), pH (H2O) of 6.5-7.7, pH (KCl) of 5.3-6.8, y1 of 6.7-13.3. The topsoil was poorly supplied with all five macronutrients (N-NO3 1 mg 100 g-1, AL-soluble P2O5 14 mg 100 g-1, AL-K2O 36 mg 100 g-1, Ca 330 mg 100 g-1, Mg 43 mg 100 g-1) and with all four micronutrients (0.5m HNO3 soluble Cu 1 mg kg-1, Zn 1 mg kg-1, Mn 9 mg kg-1, Fe 80 mg kg-1) according to soil analysis. The groundwater depth was 2-3 m. Nitrogen x Desferal (Novartis Pharma AG Basie, Switzerland, Suiza 500mg) x Genotype (Brazíl-EMBRAPA/CNPH, Brazilia-DF, India-University of Agricultural Sciences, Bangalore) x Time experiment involved 4Nx2Dx2Gx3T=48 treatments in 3 replications, giving a total of 144 plots. The N levels were 0, 100, 200 and 300 kg ha-1 year-1, and desferal levels 0 and 20 kg ha-1 year-1 with a 100 kg ha-1 year-1 P2O5 and 120 kg ha-1 year-1 K2O basic fertilisation (Table 1.) in the form of 34% NH4NO3, 18% superphosphate and 60% potassium chloride. The plot size had an area of 4x2=8 m2 with 920-920 individual plants. Forecrop over 2 years was crotalaria. Plant samples were taken and measured (green and air dry matter weight) during the vegetation grown period at least 3 times (07.07.2001., 23.08.2001. and 20.10.2001.), using 5-5 plants plot-1 randomly. Experimental datas were estimated by MANOVA of SPSS. The main goal of the whole research programme was described earlier by Márton (1999). This paper reports results of Nitrogen x Desferal x Indian genotype experimental combinations at stage the start of flowering of 23.08.2001. Results and Discussion Improving soil fertility in all the world over farming systems has become a major issue of concern on the development plant nutrition and plant production agendas. A number of international initiatives and programmes have been established which aim to address the problem of soil fertility decline, and would imply major investment of soil researches. This research reports on the nitrogen x desferal nutrition and potential use of Crotalaria juncea L. as a nonwood source of animal fodder and green manure under temperate climate conditions to soil fertility maintenance. The most important results can be summarised as follows. As the N supplies improved the root length (cm), plant height (cm), mean scores (1-5), fresh root weight (t ha-1), green straw+leaf weight (t ha-1), total green biomass weight (t ha-1), air dry root weight (t ha-1), air dry straw+leaf weight (t ha-1), and total air dry biomass weight (t ha-1) increased 1.4, 1.3, 4.3, 1.3, 1.8, 1.6, 2.1, 1.9 and 2.0 times compared to the control (Table 2.) by the start of flowering. As the N doses rised the root length, plant height, mean scores, fresh root weight, green straw+leaf weight, total green biomass weight, air dry root weight, air dry straw+leaf weight and total air dry biomass weight reaching 34.3 cm, 168.0 cm, 4.3, 14.8 t ha-1, 51.7 t ha-1, 66.5 t ha-1, 7.4 t ha-1, 16.5 t ha-1 and 23.9 t ha-1. About three-fourth of the total green biomass and total air dry biomass production at harvest was given by the straw+leaf yield, which ranged between 29.0-51.7 t ha-1 and 8.7-16.5 t ha-1, depending on the N-treatment applied. The root length, plant height, mean scores, fresh root weight, green straw+leaf weight, total green biomass weight, air dry root weight, air dry straw+leaf weight and total air dry biomass weight was increased in average with an 14, 15, 21, 157, 30, 63, 102, 28 and 51% by N+Desferal treatments compared to mean of N doses effects. By N+Desferal treatments the root length, plant height, mean scores, fresh root weight, green straw+leaf weight, total green biomass weight, air dry root weight, air dry straw+leaf weight and total air dry biomass weight achieved 37.0 cm, 173.3 cm, 4.3, 37.8 t ha-1, 64.4 t ha-1, 102.2 t ha-1, 13.8 t ha-1, 19.3 t ha-1 and 33.1 t ha-1. Approximately two-third of the total green biomass and total air dry biomass production at harvest was given by the straw+leaf yield, which ranged between 44.7-64.4 t ha-1 and 24.1-33.1 t ha-1, depending on the N+Desferal treatment rates. On the given soil the highest quantity of 300 kg ha-1 year-1 N mineral fertilizer + 20 kg ha-1 year-1 Desferal chelating agent seemed to give already over fertilization and lowered in its tendency mainly the total green biomass yield and verifiable the total air dry biomass yield. By experimental results can be summarised that we was able to increase with a great rate Crotalaria juncea L. total green biomass yield and total air dry biomass yield by N and Desferal treatments. As well as so we can show and offer different nutrition systems -with input of low, mean, high level- to different sustainable farming managements next future. Acknowledgements This research was supported by Research Institute for Soil Science and Agricultural Chemistry of the Hungarian Academy of Sciences, Budapest Hungary, National Vegetable Crops Research Centre, Brazília-DF Brazíl and University of Agricultural Sciences, Bangalore India References Arnalds, O. and Archer, S. 1999. Case studies of Rangeland desertification. Rala report 200. Agricultural Research Institute. Reykjavik Kiyoko, H. 1996. Study of the utilization of sunn hemp, Crotalaria juncea, in different sowing dates, 1995 and 1996, Okinawa-II, Santa Cruz, Bolivia. CETABOL. Santa Cruz. Bolivia Márton, L. 1997. Soil conservation research in a long term field experiment. Work paper. UAD. Karcag Márton, L. 1999. Diseases information of an alternative -Crotalaria juncea L.- crop. Plant Protection. 35:529-531. Márton, L. 2001. Effects of Crotalaria juncea L. and Crotalaria spectabilis ROTH on soil fertility and soil conservation in Hungary. Acta Agronomica Óváriensis. 43:1-8. Shenker, M., Hadar, Y. and Chen, Y. 1996. Stability Constants of the Fungal Siderophore Rhizoferrin with Various Microelements and Calcium. Soil Sci. Soc. Am. J. 60:1140-1144.

Mixed nano/micro-sized calcium phosphate composite and EDTA root surface etching improve availability of graft material in intrabony defects: an in vivo scanning electron microscopy evaluation.

PubMed

Gamal, Ahmed Y; Iacono, Vincent J

2013-12-01

The use of nanoparticles of graft materials may lead to breakthrough applications for periodontal regeneration. However, due to their small particle size, nanoparticles may be eliminated from periodontal defects by phagocytosis. In an attempt to improve nanoparticle retention in periodontal defects, the present in vivo study uses scanning electron microscopy (SEM) to evaluate the potential of micrograft particles of β-tricalcium phosphate (β-TCP) to enhance the binding and retention of nanoparticles of hydroxyapatite (nHA) on EDTA-treated and non-treated root surfaces in periodontal defects after 14 days of healing. Sixty patients having at least two hopeless periodontally affected teeth designated for extraction were randomly divided into four treatment groups (15 patients per group). Patients in group 1 had selected periodontal intrabony defects grafted with nHA of particle size 10 to 100 nm. Patients in group 2 were treated in a similar manner but had the affected roots etched for 2 minutes with a neutral 24% EDTA gel before grafting of the associated vertical defects with nHA. Patients in group 3 had the selected intrabony defects grafted with a composite graft consisting of equal volumes of nHA and β-TCP (particle size 63 to 150 nm). Patients in group 4 were treated as in group 3 but the affected roots were etched with neutral 24% EDTA as in group 2. For each of the four groups, one tooth was extracted immediately, and the second tooth was extracted after 14 days of healing for SEM evaluation. Fourteen days after surgery, all group 1 samples were devoid of any nanoparticles adherent to the root surfaces. Group 2 showed root surface areas 44.7% covered by a single layer of clot-blended grafted particles 14 days following graft application. After 14 days, group 3 samples appeared to retain fibrin strands devoid of grafted particles. Immediately extracted root samples of group 4 had adherent graft particles that covered a considerable area of the root surfaces (88.6%). Grafted particles appeared to cover all samples in a multilayered pattern. After 14 days, the group 4 extracted samples showed multilayered fibrin-covered nano/micro-sized graft particles adherent to the root surfaces (78.5%). The use of a composite graft consisting of nHA and microsized β-TCP after root surface treatment with 24% EDTA may be a suitable method to improve nHA retention in periodontal defects with subsequent graft bioreactivity.

Hyaluronan modulates TRPV1 channel opening, reducing peripheral nociceptor activity and pain

PubMed Central

Caires, Rebeca; Luis, Enoch; Taberner, Francisco J.; Fernandez-Ballester, Gregorio; Ferrer-Montiel, Antonio; Balazs, Endre A.; Gomis, Ana; Belmonte, Carlos; de la Peña, Elvira

2015-01-01

Hyaluronan (HA) is present in the extracellular matrix of all body tissues, including synovial fluid in joints, in which it behaves as a filter that buffers transmission of mechanical forces to nociceptor nerve endings thereby reducing pain. Using recombinant systems, mouse-cultured dorsal root ganglia (DRG) neurons and in vivo experiments, we found that HA also modulates polymodal transient receptor potential vanilloid subtype 1 (TRPV1) channels. HA diminishes heat, pH and capsaicin (CAP) responses, thus reducing the opening probability of the channel by stabilizing its closed state. Accordingly, in DRG neurons, HA decreases TRPV1-mediated impulse firing and channel sensitization by bradykinin. Moreover, subcutaneous HA injection in mice reduces heat and capsaicin nocifensive responses, whereas the intra-articular injection of HA in rats decreases capsaicin joint nociceptor fibres discharge. Collectively, these results indicate that extracellular HA reduces the excitability of the ubiquitous TRPV1 channel, thereby lowering impulse activity in the peripheral nociceptor endings underlying pain. PMID:26311398

Effect of foliar treatments on distribution of /sup 14/C-glyphosate in Convolvulus arvensis L

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lauridson, T.C.

1986-01-01

Field bindweed is a perennial weed which produces shoots from buds on its roots. Herbicides, such as glyphosate (N-(phosphonomethyl)glycine) used for control of field bindweed usually do not kill all shoot buds on the roots, thus field bindweed often reinfests areas within 3 to 6 weeks of treatment. This dissertation deals with the development of a technique to change glyphosate distribution in field bindweed roots and could result in less shoot regrowth after glyphosate application. In field studies eight plant growth regulators were applied in September, 3 days before 2.24 kg/ha of 2.4-D((2,4-dichlorophenoxy) acetic acid) or 1.68 kg/ha of glyphosate.more » Eight months later, regrowth of shoots was least where glyphosate was applied at 0.028 kg/ha as a pretreatment, followed by a standard rate of 1.68 kg/ha. In subsequent greenhouse studies, typical patterns of shoot growth and /sup 14/C-glyphosate distribution in isolated root sections taken from 15-week-old intact plants were determined. In subsequent growth chamber studies, plants were decapitated to observe the effect of shoot apical dominance on /sup 14/C-glyphosate translocation. After /sup 14/C-glyphosate was applied, intact plants had about twice as much /sup 14/C in distal root sections as in proximal or middle root sections. Decapitated plants had more /sup 14/C in proximal and middle root sections than in distal sections, and about twice as much /sup 14/C was translocated to roots of decapitated plants than intact plants. Eight concentrations of 2,4,-D or glyphosate from 1 to 5000 ppm were applied in logarithmic series to 6-week old plants.« less

Soil compaction related to grazing and its effects on herbaceous roots frequency and soil organic matter content in rangelands of SW Spain

NASA Astrophysics Data System (ADS)

Pulido, Manuel; Schnabel, Susanne; Francisco Lavado Contador, Joaquín; Miralles Mellado, Isabel

2016-04-01

Rangelands in SW Spain occupy a total surface area of approximately 6 million ha and constitute the most representative extensive ranching system of the Iberian Peninsula gathering more than 13 million livestock heads. They are characterised by an herbaceous layer, mostly composed of therophytic species, with a disperse tree cover, mainly holm oak and cork oak (Quercus ilex rotundifolia and Q. suber), interspersed with shrubs in many places. This type of land system is of ancient origin and experienced frequent changes in land use in the past, since agricultural, livestock and forestry activities have coexisted within the same farms. In recent decades, livestock farming has become dominant due, in part, to the subsidies of the Common Agriculture Policy. Since Spain joined the European Union in 1986 until the year 2000, the number of domestic animals doubled, particularly cattle, and consequently animal stocking rates have increased on average from 0.40 AU ha-1 up to 0.70 AU ha-1. This increase in animal stocking rates, along with a progressive substitution of cattle instead of sheep in many farms, has led to the occurrence of land degradation processes such as the reduction of grass cover or soil compaction in heavily grazed areas. Previous research has evidenced higher values of soil bulk density and resistance to penetration as well as larger bare surface areas in spring in fenced areas with animal stocking rates above 1 AU ha-1. However, a better understanding of how increasing bulk density or resistance to penetration influence the frequency of herbaceous roots and how a reduction in the frequency of roots affects soil organic matter content in rangelands is still unknown. Therefore, the main goal of this study was to determine possible relationships between the frequencies of herbaceous roots and soil organic matter content in order to understand the effect of excessive animal numbers on the depletion of soil fertility by reducing progressively the quantity of roots. The study was carried out in 22 fenced areas belonging to 10 privately-owned farms grazed under different intensities (range: 0.19 - 15.76 AU ha-1 year-1). A total number of 597 undisturbed core samples and 311 bulk samples were collected in order to determine bulk density and soil organic matter content, among other many properties. Resistance to soil penetration was quantified using Eijkelkamp Penetrologger in 890 random points at different depth (0-80 cm) and soil moisture content (dry and wet). The frequency of herbaceous roots was estimated for each soil horizon in 47 soil profiles, described according to FAO and categorized in 4 classes: none-few, common, abundant and many. All variables were pair-wise correlated and their mean values were compared between the different classes of root frequency. Results showed an inverse relationship between soil resistance to penetration and the frequency of herbaceous roots, i.e. the amount of roots lower in soils with high resistance to penetration. Soil horizons with none or few, common, abundant and many roots averaged 0.74%, 1.27%, 2.23% and 2.70% of SOM, respectively, showing significant differences between groups. Furthermore, SOM showed negative coefficients of correlation with resistance to penetration under dry (r=-0.34, p<0.05) and under wet conditions (r=-0.11, p<0.05) and bulk density (r=-0.31, p<0.05). The values herein observed confirm that soil compaction provoked by an excessive number of animals can decrease the content of soil organic matter by reducing the quantity of herbaceous roots although further research is still needed.

Ecosystem carbon density and allocation across a chronosequence of longleaf pine forests.

PubMed

Samuelson, Lisa J; Stokes, Thomas A; Butnor, John R; Johnsen, Kurt H; Gonzalez-Benecke, Carlos A; Martin, Timothy A; Cropper, Wendell P; Anderson, Pete H; Ramirez, Michael R; Lewis, John C

2017-01-01

Forests can partially offset greenhouse gas emissions and contribute to climate change mitigation, mainly through increases in live biomass. We quantified carbon (C) density in 20 managed longleaf pine (Pinus palustris Mill.) forests ranging in age from 5 to 118 years located across the southeastern United States and estimated above- and belowground C trajectories. Ecosystem C stock (all pools including soil C) and aboveground live tree C increased nonlinearly with stand age and the modeled asymptotic maxima were 168 Mg C/ha and 80 Mg C/ha, respectively. Accumulation of ecosystem C with stand age was driven mainly by increases in aboveground live tree C, which ranged from <1 Mg C/ha to 74 Mg C/ha and comprised <1% to 39% of ecosystem C. Live root C (sum of below-stump C, ground penetrating radar measurement of lateral root C, and live fine root C) increased with stand age and represented 4-22% of ecosystem C. Soil C was related to site index, but not to stand age, and made up 39-92% of ecosystem C. Live understory C, forest floor C, downed dead wood C, and standing dead wood C were small fractions of ecosystem C in these frequently burned stands. Stand age and site index accounted for 76% of the variation in ecosystem C among stands. The mean root-to-shoot ratio calculated as the average across all stands (excluding the grass-stage stand) was 0.54 (standard deviation of 0.19) and higher than reports for other conifers. Long-term accumulation of live tree C, combined with the larger role of belowground accumulation of lateral root C than in other forest types, indicates a role of longleaf pine forests in providing disturbance-resistant C storage that can balance the more rapid C accumulation and C removal associated with more intensively managed forests. Although other managed southern pine systems sequester more C over the short-term, we suggest that longleaf pine forests can play a meaningful role in regional forest C management. © 2016 by the Ecological Society of America.

Modeling the interaction and toxicity of Cu-Cd mixture to wheat roots affected by humic acids, in terms of cell membrane surface characteristics.

PubMed

Wang, Yi-Min; Zhou, Dong-Mei; Yuan, Xu-Yin; Zhang, Xiao-Hui; Li, Yi

2018-05-01

Responses of wheat (Triticum aestivum L.) seedling roots to the mixtures of copper (Cu), cadmium (Cd) and humic acids (HA) were investigated using the solution culture experiments, focusing on the interaction patterns between multiple metals and their influences on root proton release. A concentration-addition multiplication (CA) model was introduced into the modeling analysis. In comparison with metal ion activities in bulk-phase solutions, the incorporation of ion activities at the root cell membrane surfaces (CMs) (denoted as {Cu 2+ } 0 and {Cd 2+ } 0 ) into the CA model could significantly improve their correlation with RRE (relative root elongation) from 0.819 to 0.927. Modeling analysis indicated that the co-existence of {Cu 2+ } 0 significantly enhanced the rhizotoxicity of {Cd 2+ } 0 , while no significant effect of {Cd 2+ } 0 on the {Cu 2+ } 0 rhizotoxicity. 10 mg/L HA stimulated the root elongation even under metal stress. Although high concentration of metal ions inhibited the root proton release rate (ΔH + ), both the low concentration of metal ions and HA treatments increased the values of ΔH + . In HA-Cu-Cd mixtures, actions of metal ions on ΔH + values were varied intricately among treatments but well modeled by the CA model. We concluded from the CA models that the electrostatic effect is vitally important for explaining the effect of {Cu 2+ } 0 on the rhizotoxicity of {Cd 2+ } 0 , while it plays no unique role in understanding the influence of {Cd 2+ } 0 on the rhizotoxicity of {Cu 2+ } 0. Thus our study provide a novel way for modeling multiple metals behaviors in the environment and understanding the mechanisms of ion interactions. Copyright © 2018 Elsevier Ltd. All rights reserved.

Effects of Management Practices on Meloidogyne incognita and Snap Bean Yield.

PubMed

Smittle, D A; Johnson, A W

1982-01-01

Phenamiphos applied at 6.7 kg ai/ha through a solid set or a center pivot irrigation system with 28 mm of water effectively controlled root-knot nematodes, Meloidogyne incognita, and resulted in greater snap bean growth and yields irrespective of growing season, tillage method, or cover crop system. The percentage yield increases attributed to this method of M. incognita control over nontreated controls were 45% in the spring crop, and 90% and 409% in the fall crops following winter rye and fallow, respectively. Root galling was not affected by tillage systems or cover crop, but disk tillage resulted in over 50% reduction in bean yield compared with yields from the subsoil-bed tillage system.

Humic acids decrease uptake and distribution of trace metals, but not the growth of radish exposed to cadmium toxicity.

PubMed

Ondrasek, Gabrijel; Rengel, Zed; Romic, Davor

2018-04-30

Naturally-occurring highly-complexed and polymerised organics such as humic acids (HA), due to their large negative charge, play a crucial role in biogeochemistry of trace metals (TM). Toxic (Cd) as well as essential (Zn, Cu, Mn) TM bind strongly to HA, but how these organo-metalic forms influence metal uptake by plants is poorly understood. A solution culture study was conducted to characterize the effects of different concentrations of HA (0-225mg/L) on the growth and element uptake/distribution in roots, shoots and hypocotyls of radish (Raphanus sativus L.) exposed to Cd (0.5mg/L) contamination. After 10-d-exposure to applied treatments, Cd induced phytotoxicity; in contrast, different concentrations of HA had no influence on biomass, but decreased concentration of most TM in examined tissues (Cu by 4.2-fold, Zn by 2.2-fold, Cd by 1.6-fold and Mn by 34%) and their total plant accumulation (Cu by 73%, Cd by 39%, Zn by 29% and Mn by 22%). HA influenced the transport/distribution of TM, decreasing accumulation in roots and increasing their translocation/deposition in shoots, with no effect on TM content in edible hypocotyls. Chemical speciation modelling of the rooting medium confirmed predominance of free metallic forms in the control (no HA) and the pronounced organo-metal complexation in the HA treatments. The results provide evidence of strong capacity of HA to decrease phytoavailability and uptake of Cd, Zn, Cu and Mn while being non-toxic even at relatively high concentration (225mg/L). Thus, HA, as naturally present soil components, control mobility and phyto-extraction of most TM as well as their phyto-accumulation. Copyright © 2017 Elsevier Inc. All rights reserved.

Potential Carbon Negative Commercial Aviation through Land Management

NASA Technical Reports Server (NTRS)

Hendricks, Robert C.

2008-01-01

Brazilian terra preta soil and char-enhanced soil agricultural systems have demonstrated both enhanced plant biomass and crop yield and functions as a carbon sink. Similar carbon sinking has been demonstrated for both glycophyte and halophyte plants and plant roots. Within the assumption of 3.7 t-C/ha/yr soils and plant root carbon sinking, it is possible to provide carbon neutral U.S. commercial aviation using about 8.5% of U.S. arable lands. The total airline CO2 release would be offset by carbon credits for properly managed soils and plant rooting, becoming carbon neutral for carbon sequestered synjet processing. If these lands were also used to produce biomass fuel crops such as soybeans at an increased yield of 60 bu/acre (225gal/ha), they would provide over 3.15 10(exp 9) gallons biodiesel fuel. If all this fuel were refined into biojet it would provide a 16% biojet-84% synjet blend. This allows the U.S. aviation industry to become carbon negative (carbon negative commercial aviation through carbon credits). Arid land recovery could yield even greater benefits.

Biocontrol of verticillium wilt and colonization of cotton plants by an endophytic bacterial isolate.

PubMed

Li, C-H; Shi, L; Han, Q; Hu, H-L; Zhao, M-W; Tang, C-M; Li, S-P

2012-09-01

To explore biocontrol potential of 39 DAEB isolates (doubly antagonistic towards both Verticillium dahliae Kleb and Fusarium oxysporum) against verticillium wilt of cotton and to elucidate colonization and category characteristics of an endophytic bacterium with significant biocontrol activity. Thirty-nine antagonistic endophytic bacteria strains were tested for their ability to control verticillium wilt in cotton plants caused by a defoliating pathotype of V. dahliae 107 in cotton under controlled conditions. The biocontrol trial revealed that an endophytic bacterium, designated HA02, showed a significant biocontrol activity to V. dahliae 107. After cotton seedlings were inoculated with a gfp gene-tagged HA02 (HA02-gfp), HA02-gfp populations were higher in the root than in the stem; in addition, the HA02-gfp was distributed in the maturation zone of cotton root. Furthermore, HA02-gfp also colonized seedlings of maize, rape and soybean after the bacteria inoculation. Phylogenetic trees based on 16S rDNA sequences combined with morphological, physiological and identification showed that the bacterium belongs to the Enterobacter genus. Our results showed that only 1 of 39 DAEB isolates demonstrated more efficient biocontrol potential towards V. dahliae 107 in greenhouse and field trials. HA02-gfp mainly colonized cotton in roots. In addition, we quantitatively observed HA02 colonization in other hosts. HA02 belongs to the Enterobacter genus. This is the first study on biocontrol to defoliating pathotype of V. dahliae Kleb by endophytic bacteria. The HA02 showed effective biocontrol to V. dahliae 107 in greenhouse and field trials. Furthermore, we assessed the quantitative and qualitative colonization of HA02 in cotton seedlings. Our study provides basic information to further explore managing strategies to control this critical disease. © 2012 The Authors Journal of Applied Microbiology © 2012 The Society for Applied Microbiology.

Control of Heterodera carotae, Ditylenchus dipsaci, and Meloidogyne javanica with Fumigant and Nonfumigant Nematicides

PubMed Central

Greco, N.; Elia, F.; Brandonisio, A.

1986-01-01

Five field trials were conducted in Italy in 1983 and 1984 to test the efficacy of isazofos and benfuracarb in controlling Heterodera carotae on carrot, Ditylenchus dipsaci on onion, and Meloidogyne javanica on tomato. Methyl isothiocyanate (MIT) was tested against H. carotae and M. javanica. Single (10 kg a.i./ha) and split (5 + 5 kg a.i./ha) applications of isazofos gave yield increases of carrot and onion similar to those obtained with DD (300 liters/ha) and aldicarb (10 kg a.i./ha). Population densities of H. carotae in carrot roots at harvest and of M. javanica in tomato roots 2 months after transplanting were also suppressed by isazofos. Benfuracarb (10 kg a.i./ha increased onion yields in a field infested with D. dipsaci, but it was not effective against H. carotae or M. javanica. The efficacy of MIT at 400 and 600 liters/ha was similar to that of MIT + DD (Di-Trapex) at 300 liters/ha. Both nematicides inhibited hatch of H. carotae eggs and decreased the soil population density of M. javanica. PMID:19294191

Nutrient limitation in three lowland tropical forests in southern China receiving high nitrogen deposition: insights from fine root responses to nutrient additions.

PubMed

Zhu, Feifei; Yoh, Muneoki; Gilliam, Frank S; Lu, Xiankai; Mo, Jiangming

2013-01-01

Elevated nitrogen (N) deposition to tropical forests may accelerate ecosystem phosphorus (P) limitation. This study examined responses of fine root biomass, nutrient concentrations, and acid phosphatase activity (APA) of bulk soil to five years of N and P additions in one old-growth and two younger lowland tropical forests in southern China. The old-growth forest had higher N capital than the two younger forests from long-term N accumulation. From February 2007 to July 2012, four experimental treatments were established at the following levels: Control, N-addition (150 kg N ha(-1) yr(-1)), P-addition (150 kg P ha(-1) yr(-1)) and N+P-addition (150 kg N ha(-1) yr(-1) plus 150 kg P ha(-1) yr(-1)). We hypothesized that fine root growth in the N-rich old-growth forest would be limited by P availability, and in the two younger forests would primarily respond to N additions due to large plant N demand. Results showed that five years of N addition significantly decreased live fine root biomass only in the old-growth forest (by 31%), but significantly elevated dead fine root biomass in all the three forests (by 64% to 101%), causing decreased live fine root proportion in the old-growth and the pine forests. P addition significantly increased live fine root biomass in all three forests (by 20% to 76%). The combined N and P treatment significantly increased live fine root biomass in the two younger forests but not in the old-growth forest. These results suggest that fine root growth in all three study forests appeared to be P-limited. This was further confirmed by current status of fine root N:P ratios, APA in bulk soil, and their responses to N and P treatments. Moreover, N addition significantly increased APA only in the old-growth forest, consistent with the conclusion that the old-growth forest was more P-limited than the younger forests.

Prunus persica crop management as step toward AMF diversity conservation for the sustainable soil management

NASA Astrophysics Data System (ADS)

Alguacil, M. M.; Torrecillas, E.; Lozano, Z.; Garcia-Orenes, F.; Roldan, A.

2012-04-01

We investigated the diversity of arbuscular mycorrhizal fungi (AMF) in roots of Prunus persica under two fertilization treatments (CF: consisted of application of chicken manure (1400 kg.ha-1), urea (140 kg.ha-1), complex fertilizer 12-12-17/2 (280 kg.ha-1), and potassium sulfate (40 kg.ha-1) and IF: consisted of application of urea (140 kg.ha-1), complex fertilizer 12-12-17/2 (400 kg.ha-1) and potassium sulfate (70 kg.ha-1)) combined with integrated pest management (IM) or chemical pest management (CM), in a tropical agroecosystem in the north of Venezuela. Our goal was to ascertain how different fertilizers/pest management can modify the AMF diversity colonizing P. persica roots as an important step towards sustainable soil use and therefore protection of biodiversity. The AM fungal small-subunit (SSU) rRNA genes were subjected to PCR, cloning, sequencing and phylogenetic analyses. Twenty-one different phylotypes were identified, which were grouped in five families: Glomeraceae, Paraglomeraceae, Acaulosporaceae, Gigasporaceae and Archaeosporaceae. Sixteen of these sequence groups belonged to the genus Glomus, two to Paraglomus, one to Acaulospora, one to Scutellospora and one to Archaeospora. A different distribution of the AMF phylotypes as consequence of the difference between treatments was observed. Thus, the AMF communities of tree roots in the (IF+CM) treatment had the lowest diversity (H'=1.78) with the lowest total number of AMF sequence types (9). The trees from both (CF+IM) and (IF+IM) treatments had similar AMF diversity (H'?2.00); while the treatment (CF+CM) yielded the highest number of different AMF sequence types (17) and showed the highest diversity index (H'=2.69). In conclusion, the crop management including combination of organic and inorganic fertilization and chemical pest control appears to be the most suitable strategy with respect to reactivate the AMF diversity in the roots of this crop and thus, the agricultural and environmental sustainability in the agroecosystem.

Root Traits Enhancing Rice Grain Yield under Alternate Wetting and Drying Condition

PubMed Central

Sandhu, Nitika; Subedi, Sushil R.; Yadaw, Ram B.; Chaudhary, Bedanand; Prasai, Hari; Iftekharuddaula, Khandakar; Thanak, Tho; Thun, Vathany; Battan, Khushi R.; Ram, Mangat; Venkateshwarlu, Challa; Lopena, Vitaliano; Pablico, Paquito; Maturan, Paul C.; Cruz, Ma. Teresa Sta.; Raman, K. Anitha; Collard, Bertrand; Kumar, Arvind

2017-01-01

Reducing water requirements and lowering environmental footprints require attention to minimize risks to food security. The present study was conducted with the aim to identify appropriate root traits enhancing rice grain yield under alternate wetting and drying conditions (AWD) and identify stable, high-yielding genotypes better suited to the AWD across variable ecosystems. Advanced breeding lines, popular rice varieties and drought-tolerant lines were evaluated in a series of 23 experiments conducted in the Philippines, India, Bangladesh, Nepal and Cambodia in 2015 and 2016. A large variation in grain yield under AWD conditions enabled the selection of high-yielding and stable genotypes across locations, seasons and years. Water savings of 5.7–23.4% were achieved without significant yield penalty across different ecosystems. The mean grain yield of genotypes across locations ranged from 3.5 to 5.6 t/ha and the mean environment grain yields ranged from 3.7 (Cambodia) to 6.6 (India) t/ha. The best-fitting Finlay-Wilkinson regression model identified eight stable genotypes with mean grain yield of more than 5.0 t/ha across locations. Multidimensional preference analysis represented the strong association of root traits (nodal root number, root dry weight at 22 and 30 days after transplanting) with grain yield. The genotype IR14L253 outperformed in terms of root traits and high mean grain yield across seasons and six locations. The 1.0 t/ha yield advantage of IR14L253 over the popular cultivar IR64 under AWD shall encourage farmers to cultivate IR14L253 and also adopt AWD. The results suggest an important role of root architectural traits in term of more number of nodal roots and root dry weight at 10–20 cm depth on 22–30 days after transplanting (DAT) in providing yield stability and preventing yield reduction under AWD compared to continuous flooded conditions. Genotypes possessing increased number of nodal roots provided higher yield over IR64 as well as no yield reduction under AWD compared to flooded irrigation. The identification of appropriate root architecture traits at specific depth and specific growth stage shall help breeding programs develop better rice varieties for AWD conditions. PMID:29163604

Fine root dynamics and forest production across a calcium gradient in northern hardwood and conifer ecosystems

USGS Publications Warehouse

Park, B.B.; Yanai, R.D.; Fahey, T.J.; Bailey, S.W.; Siccama, T.G.; Shanley, J.B.; Cleavitt, N.L.

2008-01-01

Losses of soil base cations due to acid rain have been implicated in declines of red spruce and sugar maple in the northeastern USA. We studied fine root and aboveground biomass and production in five northern hardwood and three conifer stands differing in soil Ca status at Sleepers River, VT; Hubbard Brook, NH; and Cone Pond, NH. Neither aboveground biomass and production nor belowground biomass were related to soil Ca or Ca:Al ratios across this gradient. Hardwood stands had 37% higher aboveground biomass (P = 0.03) and 44% higher leaf litter production (P < 0.01) than the conifer stands, on average. Fine root biomass (<2 mm in diameter) in the upper 35 cm of the soil, including the forest floor, was very similar in hardwoods and conifers (5.92 and 5.93 Mg ha-1). The turnover coefficient (TC) of fine roots smaller than 1 mm ranged from 0.62 to 1.86 y-1 and increased significantly with soil exchangeable Ca (P = 0.03). As a result, calculated fine root production was clearly higher in sites with higher soil Ca (P = 0.02). Fine root production (biomass times turnover) ranged from 1.2 to 3.7 Mg ha-1 y-1 for hardwood stands and from 0.9 to 2.3 Mg ha-1 y -1 for conifer stands. The relationship we observed between soil Ca availability and root production suggests that cation depletion might lead to reduced carbon allocation to roots in these ecosystems. ?? 2008 Springer Science+Business Media, LLC.

Management of Root-knot Nematodes by Phenamiphos Applied through an Irrigation Simulator with Various Amounts of Water

PubMed Central

Johnson, A. W.; Young, J. R.; Wright, W. C.

1986-01-01

Phenamiphos (6.7 kg a.i./ha) was applied via an irrigation simulator to squash at planting (AP) and 2 weeks after planting (PP), and to corn AP and 1 week PP to manage root-knot nematodes (Meloidogyne incognita). The nematicide was applied with 0.25, 0.64, 1.27, and 1.91 cm surface water/ ha to a Lakeland sand in which the soil moisture was at or near field capacity. Based on efficacy and crop response, no additional benefits resulted when phenamiphos was applied in volumes of water greater than 0.25 crn/ha. The cost of applying each 0.25 cm of water over a hectare is approximately $1.08, or a 92% reduction in nematicide application cost over conventional methods ($13.50/ha). Low root-gall indices and high yields from squash and corn indicate more effective nematode management when phenamiphos was applied AP rather than PP. Results from this method of applying phenamiphos suggest that certain nematicides could be used as salvage alternatives when nematodes are detected in crops soon after planting. For multiple-pest management, nematicides, other compatible biocides, and fertilizers could be applied simultaneously with sprinkler irrigation. PMID:19294192

Recycling of wastes from fish beneficiation by composting: chemical characteristics of the compost and efficiency of their humic acids in stimulating the growth of lettuce.

PubMed

Busato, Jader Galba; de Carvalho, Caroline Moreira; Zandonadi, Daniel Basilio; Sodré, Fernando Fabriz; Mol, Alan Ribeiro; de Oliveira, Aline Lima; Navarro, Rodrigo Diana

2017-11-23

Waste from the beneficiation of fish was composted with crushed grass aiming to characterize their chemical composition and investigate the possibility of the use of the final compost as source of humic acids (HA) able to stimulate the growth of lettuce. Compost presented pH value, C/N ratio, and electrical conductivity that allow its use as an organic fertilizer. The element content was present in the following order of abundance in the compost: P > Ca > N > Mg > K > Fe > Zn > Mn > Mo > Cu, and the humus composition was similar to that observed in others kind of organic residues composted. The high content of oxygen pointed out a high level of oxidation of HA, in line with the predominance of phenolic acidity in the functional groups. The 13 C-NMR spectra showed marked resonances due to the presence of lipids and other materials resistant to degradation as methoxy substituent and N-alkyl groups. A concentration of 20 mg L -1 HA increased significantly both dry and wet root matter in lettuce but the CO 2 assimilation, stomatal conductance, and number of lateral roots of the plants were not affected. However, increases of 64% in the water-use efficiency was observed due to the HA addition, probably related to the root morphology alteration which resulted in 1.6-fold increase of lateral root average length and due to the higher H + extrusion activity. Reuse of residues from the fish beneficiation activity by composting may represent a safe tool to increase the value of recycled organic residues and generate HA with potential use as plant growth stimulants.

Effects of starter nitrogen fertilizer on soybean root activity, leaf photosynthesis and grain yield

PubMed Central

Gai, Zhijia; Zhang, Jingtao; Li, Caifeng

2017-01-01

The objective of this study was to examine the impact of starter nitrogen fertilizer on soybean root activity, leaf photosynthesis, grain yield and their relationship. To achieve this objective, field experiments were conducted in 2013 and 2014, using a randomized complete block design, with three replications. Nitrogen was applied at planting at rates of 0, 25, 50, and 75 kg N ha-1. In both years, starter nitrogen fertilizer benefited root activity, leaf photosynthesis, and consequently its yield. Statistically significant correlation was found among root activity, leaf photosynthetic rate, and grain yield at the developmental stage. The application of N25, N50, and N75 increased grain yield by 1.28%, 2.47%, and 1.58% in 2013 and by 0.62%, 2.77%, and 2.06% in 2014 compared to the N0 treatment. Maximum grain yield of 3238.91 kg ha-1 in 2013 and 3086.87 kg ha-1 in 2014 were recorded for N50 treatment. Grain yield was greater for 2013 than 2014, possibly due to more favorable environmental conditions. This research indicated that applying nitrogen as starter is necessary to increase soybean yield in Sangjiang River Plain in China. PMID:28388620

Performance of fenugreek bioinoculated with Rhizobium meliloti strains under semi-arid condition.

PubMed

Singh, N K; Patel, D B

2016-01-01

Rhizobium meliloti strains were isolated from the fields of S.D. Agricultural University (Gujarat, India) and were maintained in the Congo Red Yeast Extract Mannitol Agar medium. These strains were tested for their effectiveness for fenugreek crop grown under semi-arid condition. Among the six Rhizobium strains, FRS-7 strain showed best plant growth parameters like shoot length, shoot dry weight, shoot total nitrogen, root length, root dry weight, root total nitrogen, seed yield, 1000 grain weight, number of root nodules, and nodules fresh and dry weight. The performance of this strain was better as compared to 20 kgN ha(-1) treatment through urea and was even far better over control plot. Seed yields obtained with FRS-7 during two years were 10.14 and 9.66 q ha(-1); which was about 36.8% and 45.9% high over control. This strain resulted in saving of about 20 kgN ha(-1) accompanied with better crop yield and soil health. Results of the present experiments can be utilized in integrated nutrient management for cultivation of fenugreek in semi-arid areas to provide sustainability to agricultural productivity in such regions.

First report of root rot of cowpea caused by Fusarium equiseti in Georgia in the United States

USDA-ARS?s Scientific Manuscript database

Root rot was observed on cowpea in Tift County, Georgia, in May of 2015. The disease occurred on approximately 10% of cowpea plants in 2 fields (2 ha). Symptoms appeared as sunken reddish brown lesions on roots and stems under the soil line, secondary roots became dark brown and rotted, and infected...

An evaluation of government-recommended stocking systems for sustaining pastoral businesses and ecosystems of the Alpine Meadows of the Qinghai-Tibetan Plateau.

PubMed

Wang, Yingxin; Hodgkinson, Kenneth C; Hou, Fujiang; Wang, Zhaofeng; Chang, Shenghua

2018-04-01

China introduced the "Retire Livestock and Restore Grassland" policy in 2003. It was strengthened in 2011 by additional funding for on-farm structures. On the Qinghai-Tibetan Plateau (QTP), fences were erected, livestock excluded from degraded areas, rotational stocking introduced, nighttime shelters were built, forages grown, and seed sown. However, the effectiveness of these actions and their value to Tibetan herders has been questioned. We conducted a sheep stocking experiment for 5 years in an Alpine Meadow region of the QTP to evaluate stocking options recommended by Government. Cold and warm season stocking each at three rates (0, 8, and 16 sheep/ha) and continuous stocking at 0 and 4 sheep/ha were compared. We measured live weights of sheep, plant species richness and evenness, root biomass and carbon (C), nitrogen (N) and phosphorus (P) contents of the 0-10 cm of soil. We found that resting grassland from stocking during the warm season for later cold season stocking significantly reduced plant species richness and evenness and root biomass but not soil C, N, and P. During cold season stocking, live weights of sheep declined whether at a stocking rate of 8 or 16 per ha. In contrast, sheep continuously stocked on grassland at 4 per ha gained weight throughout both the warm and cold seasons and plant species richness and evenness were maintained. Warm season stocking at 8 and 16 sheep/ha increased plant species richness and root biomass but reduced plant species evenness. Resting these alpine grasslands from stocking in the warm season has adverse consequences for plant conservation. Fencing from stocking in the warm season is not justified by this study; all grassland should be judiciously stocked during the warm season to maintain plant species richness. Neither resting nor stocking during the cold season appears to have any adverse consequences but sheltering and in-door feeding of sheep during the cold season may be more profitable than cold season stocking with use of open nighttime yards.

Tree Age Effects on Fine Root Biomass and Morphology over Chronosequences of Fagus sylvatica, Quercus robur and Alnus glutinosa Stands

PubMed Central

Jagodzinski, Andrzej M.; Ziółkowski, Jędrzej; Warnkowska, Aleksandra; Prais, Hubert

2016-01-01

There are few data on fine root biomass and morphology change in relation to stand age. Based on chronosequences for beech (9–140 years old), oak (11–140 years) and alder (4–76 years old) we aimed to examine how stand age affects fine root biomass and morphology. Soil cores from depths of 0–15 cm and 16–30 cm were used for the study. In contrast to previously published studies that suggested that maximum fine root biomass is reached at the canopy closure stage of stand development, we found almost linear increases of fine root biomass over stand age within the chronosequences. We did not observe any fine root biomass peak in the canopy closure stage. However, we found statistically significant increases of mean fine root biomass for the average individual tree in each chronosequence. Mean fine root biomass (0–30 cm) differed significantly among tree species chronosequences studied and was 4.32 Mg ha-1, 3.71 Mg ha-1 and 1.53 Mg ha-1, for beech, oak and alder stands, respectively. The highest fine root length, surface area, volume and number of fine root tips (0–30 cm soil depth), expressed on a stand area basis, occurred in beech stands, with medium values for oak stands and the lowest for alder stands. In the alder chronosequence all these values increased with stand age, in the beech chronosequence they decreased and in the oak chronosequence they increased until ca. 50 year old stands and then reached steady-state. Our study has proved statistically significant negative relationships between stand age and specific root length (SRL) in 0–30 cm soil depth for beech and oak chronosequences. Mean SRLs for each chronosequence were not significantly different among species for either soil depth studied. The results of this study indicate high fine root plasticity. Although only limited datasets are currently available, these data have provided valuable insight into fine root biomass and morphology of beech, oak and alder stands. PMID:26859755

Compost Addition Enhanced Hyphal Growth and Sporulation of Arbuscular Mycorrhizal Fungi without Affecting Their Community Composition in the Soil

PubMed Central

Yang, Wei; Gu, Siyu; Xin, Ying; Bello, Ayodeji; Sun, Wenpeng; Xu, Xiuhong

2018-01-01

Arbuscular mycorrhizal (AM) fungi form symbiotic associations with most crop plant species in agricultural ecosystems, and are conspicuously influenced by various agricultural practices. To understand the impact of compost addition on AM fungi, we examined effect of four compost rates (0, 11.25, 22.5, and 45 Mg/ha) on the abundance and community composition of AM fungi in seedling, flowering, and mature stage of soybean in a 1-year compost addition experiment system in Northeast China. Soybean [Glycine max (L.) Merrill] was used as test plant. Moderate (22.5 Mg/ha) and high (45 Mg/ha) levels of compost addition significantly increased AM root colonization and extraradical hyphal (ERH) density compared with control, whereas low (11.5 Mg/ha) level of compost addition did not cause significant increase in AM root colonization and ERH density. AM fungal spore density was significantly enhanced by all the compost rates compared with control. The temporal variations analysis revealed that, AM root colonization in seedling stage was significantly lower than in flowering and mature stage. Although AM fungal operational taxonomic unit richness and community composition was unaffected by compost addition, some abundant AM fungal species showed significantly different response to compost addition. In mature stage, Rhizophagus fasciculatum showed increasing trend along with compost addition gradient, whereas the opposite was observed with Paraglomus sp. In addition, AM fungal community composition exhibited significant temporal variation during growing season. Further analysis indicated that the temporal variation in AM fungal community only occurred in control treatment, but not in low, moderate, and high level of compost addition treatments. Our findings highlighted the significant effects of compost addition on AM growth and sporulation, and emphasized that growth stage is a stronger determinant than 1-year compost addition in shaping AM fungal community in black soil of Northeast China. PMID:29467752

Compost Addition Enhanced Hyphal Growth and Sporulation of Arbuscular Mycorrhizal Fungi without Affecting Their Community Composition in the Soil.

PubMed

Yang, Wei; Gu, Siyu; Xin, Ying; Bello, Ayodeji; Sun, Wenpeng; Xu, Xiuhong

2018-01-01

Arbuscular mycorrhizal (AM) fungi form symbiotic associations with most crop plant species in agricultural ecosystems, and are conspicuously influenced by various agricultural practices. To understand the impact of compost addition on AM fungi, we examined effect of four compost rates (0, 11.25, 22.5, and 45 Mg/ha) on the abundance and community composition of AM fungi in seedling, flowering, and mature stage of soybean in a 1-year compost addition experiment system in Northeast China. Soybean [ Glycine max (L.) Merrill] was used as test plant. Moderate (22.5 Mg/ha) and high (45 Mg/ha) levels of compost addition significantly increased AM root colonization and extraradical hyphal (ERH) density compared with control, whereas low (11.5 Mg/ha) level of compost addition did not cause significant increase in AM root colonization and ERH density. AM fungal spore density was significantly enhanced by all the compost rates compared with control. The temporal variations analysis revealed that, AM root colonization in seedling stage was significantly lower than in flowering and mature stage. Although AM fungal operational taxonomic unit richness and community composition was unaffected by compost addition, some abundant AM fungal species showed significantly different response to compost addition. In mature stage, Rhizophagus fasciculatum showed increasing trend along with compost addition gradient, whereas the opposite was observed with Paraglomus sp. In addition, AM fungal community composition exhibited significant temporal variation during growing season. Further analysis indicated that the temporal variation in AM fungal community only occurred in control treatment, but not in low, moderate, and high level of compost addition treatments. Our findings highlighted the significant effects of compost addition on AM growth and sporulation, and emphasized that growth stage is a stronger determinant than 1-year compost addition in shaping AM fungal community in black soil of Northeast China.

Furylhydroquinones and miscellaneous compounds from the roots of Lithospermum erythrorhizon and their anti-inflammatory effect in HaCaT cells.

PubMed

Ahn, Jongmin; Chae, Hee-Sung; Chin, Young-Won; Kim, Jinwoong

2018-01-31

One new furylhydroquinone derivative (1) and seven known compounds (2-8) were isolated from the roots of Lithospermum erythrorhizon Sieb. et Zucc (Boraginaceae). The structure of 1 was elucidated by extensive spectroscopic methods using NMR and MS. The absolute configuration of shikonofuran J (1) was unambiguously determined by aid of comparison experimental ECD with predicted ECD spectra. All the isolates were tested for their inhibitory activities against IL-6 production in HaCaT cells stimulated by tumor necrosis factor (TNF)-α. It was found that gracicleistanthoside (5) and uridine (7) remarkably down-regulated the TNF-α-induced synthesis of interleukin-6 (IL-6), a pro-inflammatory cytokine associated with cutaneous inflammation, in HaCaT cells.

[Fine root dynamics and its relationship with soil fertility in tropical rainforests of Chocó].

PubMed

Quinto, Harley; Caicedo, Haylin; Thelis Perez, May; Moreno, Flavio

2016-12-01

The fine roots play an important role in the acquisition of water and minerals from the soil, the global carbon balance and mitigation of climate change. The dynamics (productivity and turnover) of fine roots is essential for nutrient cycling and carbon balance of forest ecosystems. The availability of soil water and nutrients has significantly determined the productivity and turnover of fine roots. It has been hypothesized that fine roots dynamics increases with the availability of soil resources in tropical forest ecosystems. To test this hypothesis in tropical rainforests of Chocó (ecosystems with the highest rainfall in the world), five one-ha permanent plots were established in the localities of Opogodó and Pacurita, where the productivity and turnover of fine roots were measured at 0-10 cm and 10-20 cm depth. The measurement of the fine root production was realized by the Ingrowth core method. The fine root turnover was measured like fine roots production divided mean annual biomass. In addition, soil fertility parameters (pH, nutrients, and texture) were measured and their association with productivity and turnover of fine roots was evaluated. It was found that the sites had nutrient-poor soils. The localities also differ in soil; Opogodó has sandy soils and flat topography, and Pacurita has clay soils, rich in aluminum and mountainous topography. In Opogodó fine root production was 6.50 ± 2.62 t/ha.yr (mean ± SD). In Pacurita, fine root production was 3.61 ± 0.88 t/ha.yr. Also in Opogodó, the fine root turnover was higher than in Pacurita (1.17 /y and 0.62 /y, respectively). Fine root turnover and production in the upper soil layers (10 cm upper soil) was considerably higher. Productivity and turnover of fine roots showed positive correlation with pH and contents of organic matter, total N, K, Mg, and sand; whereas correlations were negative with ECEC and contents of Al, silt, and clay. The percentage of sand was the parameter that best explained the variations of fine root production. The fine root turnover was negatively explained by soil Al availability. Results suggested the increase of fine root dynamics with soil fertility at a local scale, which also indicates that under the oligotrophic conditions of soils in tropical rainforests, fine roots tend to proliferate rapidly in small patches of soil rich in sand and nutrients.

Effect of phosphoric fertilizer and starter rates of nitrogen fertilizers on the phosphatase activity in the rhizosphere soil and nonlignified soybean roots under drought conditions

NASA Astrophysics Data System (ADS)

Emnova, E. E.; Daraban, O. V.; Bizgan, I. V.; Toma, S. I.

2014-02-01

In a small-plot field experiment, two soybean ( Glycine max L.) cultivars were grown on a calcareous chernozem under the drought conditions of 2012 with the preplanting application of simple superphosphate (Ps) at 60 kg/ha, urea (Nu) at 10 and 20 kg/ha, and ammonium nitrate (Nan) at 20 kg/ha. The phosphatase activity was measured in the rhizosphere soil (0- to 20-cm layer) and the fine nonlignified roots of soybean plants at the blossoming and pod-formation stages (the soil water content was 19 and 33% of the total water capacity, respectively). The maximum content of available phosphorus in the rhizosphere of both soybean cultivars (4.3-4.8 mg/100 g dry soil) was found at the simultaneous application of Ps and Nu20. Higher activities of the predominant phosphatases (alkaline phosphatase in the rhizosphere and acid phosphatase in the roots) were observed in the root-inhabited zone of the soil under the Indra cultivar compared to the Aura cultivar, which correlated with the lower content of available phosphorus in the rhizosphere soil (especially at the simultaneous application of Ps and Nu20) and the higher productivity of this cultivar in this treatment.

Effect of a Terminated Cover Crop and Aldicarb on Cotton Yield and Meloidogyne incognita Population Density

PubMed Central

Wheeler, T. A.; Leser, J. F.; Keeling, J. W.; Mullinix, B.

2008-01-01

Terminated small grain cover crops are valuable in light textured soils to reduce wind and rain erosion and for protection of young cotton seedlings. A three-year study was conducted to determine the impact of terminated small grain winter cover crops, which are hosts for Meloidogyne incognita, on cotton yield, root galling and nematode midseason population density. The small plot test consisted of the cover treatment as the main plots (winter fallow, oats, rye and wheat) and rate of aldicarb applied in-furrow at-plant (0, 0.59 and 0.84 kg a.i./ha) as subplots in a split-plot design with eight replications, arranged in a randomized complete block design. Roots of 10 cotton plants per plot were examined at approximately 35 days after planting. Root galling was affected by aldicarb rate (9.1, 3.8 and 3.4 galls/root system for 0, 0.59 and 0.84 kg aldicarb/ha), but not by cover crop. Soil samples were collected in mid-July and assayed for nematodes. The winter fallow plots had a lower density of M. incognita second-stage juveniles (J2) (transformed to Log10 (J2 + 1)/500 cm3 soil) than any of the cover crops (0.88, 1.58, 1.67 and 1.75 Log10(J2 + 1)/500 cm3 soil for winter fallow, oats, rye and wheat, respectively). There were also fewer M. incognita eggs at midseason in the winter fallow (3,512, 7,953, 8,262 and 11,392 eggs/500 cm3 soil for winter fallow, oats, rye and wheat, respectively). Yield (kg lint per ha) was increased by application of aldicarb (1,544, 1,710 and 1,697 for 0, 0.59 and 0.84 kg aldicarb/ha), but not by any cover crop treatments. These results were consistent over three years. The soil temperature at 15 cm depth, from when soils reached 18°C to termination of the grass cover crop, averaged 9,588, 7,274 and 1,639 centigrade hours (with a minimum threshold of 10°C), in 2005, 2006 and 2007, respectively. Under these conditions, potential reproduction of M. incognita on the cover crop did not result in a yield penalty. PMID:19259531

Effect of a Terminated Cover Crop and Aldicarb on Cotton Yield and Meloidogyne incognita Population Density.

PubMed

Wheeler, T A; Leser, J F; Keeling, J W; Mullinix, B

2008-06-01

Terminated small grain cover crops are valuable in light textured soils to reduce wind and rain erosion and for protection of young cotton seedlings. A three-year study was conducted to determine the impact of terminated small grain winter cover crops, which are hosts for Meloidogyne incognita, on cotton yield, root galling and nematode midseason population density. The small plot test consisted of the cover treatment as the main plots (winter fallow, oats, rye and wheat) and rate of aldicarb applied in-furrow at-plant (0, 0.59 and 0.84 kg a.i./ha) as subplots in a split-plot design with eight replications, arranged in a randomized complete block design. Roots of 10 cotton plants per plot were examined at approximately 35 days after planting. Root galling was affected by aldicarb rate (9.1, 3.8 and 3.4 galls/root system for 0, 0.59 and 0.84 kg aldicarb/ha), but not by cover crop. Soil samples were collected in mid-July and assayed for nematodes. The winter fallow plots had a lower density of M. incognita second-stage juveniles (J2) (transformed to Log(10) (J2 + 1)/500 cm(3) soil) than any of the cover crops (0.88, 1.58, 1.67 and 1.75 Log(10)(J2 + 1)/500 cm(3) soil for winter fallow, oats, rye and wheat, respectively). There were also fewer M. incognita eggs at midseason in the winter fallow (3,512, 7,953, 8,262 and 11,392 eggs/500 cm(3) soil for winter fallow, oats, rye and wheat, respectively). Yield (kg lint per ha) was increased by application of aldicarb (1,544, 1,710 and 1,697 for 0, 0.59 and 0.84 kg aldicarb/ha), but not by any cover crop treatments. These results were consistent over three years. The soil temperature at 15 cm depth, from when soils reached 18 degrees C to termination of the grass cover crop, averaged 9,588, 7,274 and 1,639 centigrade hours (with a minimum threshold of 10 degrees C), in 2005, 2006 and 2007, respectively. Under these conditions, potential reproduction of M. incognita on the cover crop did not result in a yield penalty.

Determination of mangrove change in Matang Mangrove Forest using multi temporal satellite imageries

NASA Astrophysics Data System (ADS)

Ibrahim, N. A.; Mustapha, M. A.; Lihan, T.; Ghaffar, M. A.

2013-11-01

Mangrove protects shorelines from damaging storm and hurricane winds, waves, and floods. Mangroves also help prevent erosion by stabilizing sediments with their tangled root systems. They maintain water quality and clarity, filtering pollutants and trapping sediments originating from land. However, mangrove has been reported to be threatened by land conversion for other activities. In this study, land use and land cover changes in Matang Mangrove Forest during the past 18 years (1993 to 2011) were determined using multi-temporal satellite imageries by Landsat TM and RapidEye. In this study, classification of land use and land cover approach was performed using the maximum likelihood classifier (MCL) method along with vegetation index differencing (NDVI) technique. Data obtained was evaluated through Kappa coefficient calculation for accuracy and results revealed that the classification accuracy was 81.25% with Kappa Statistics of 0.78. The results indicated changes in mangrove forest area to water body with 2,490.6 ha, aquaculture with 890.7 ha, horticulture with 1,646.1 ha, palm oil areas with 1,959.2 ha, dry land forest with 2,906.7 ha and urban settlement area with 224.1 ha. Combinations of these approaches were useful for change detection and for indication of the nature of these changes.

Biogeochemical cycling in terrestrial ecosystems of the Caatinga Biome.

PubMed

Menezes, R S C; Sampaio, E V S B; Giongo, V; Pérez-Marin, A M

2012-08-01

The biogeochemical cycles of C, N, P and water, the impacts of land use in the stocks and flows of these elements and how they can affect the structure and functioning of Caatinga were reviewed. About half of this biome is still covered by native secondary vegetation. Soils are deficient in nutrients, especially N and P. Average concentrations of total soil P and C in the top layer (0-20 cm) are 196 mg kg(-1) and 9.3 g kg(-1), corresponding to C stocks around 23 Mg ha(-1). Aboveground biomass of native vegetation varies from 30 to 50 Mg ha(-1), and average root biomass from 3 to 12 Mg ha(-1). Average annual productivities and biomass accumulation in different land use systems vary from 1 to 7 Mg ha(-1) year(-1). Biological atmospheric N2 fixation is estimated to vary from 3 to 11 kg N ha(-1) year-1 and 21 to 26 kg N ha(-1) year(-1) in mature and secondary Caatinga, respectively. The main processes responsible for nutrient and water losses are fire, soil erosion, runoff and harvest of crops and animal products. Projected climate changes in the future point to higher temperatures and rainfall decreases. In face of the high intrinsic variability, actions to increase sustainability should improve resilience and stability of the ecosystems. Land use systems based on perennial species, as opposed to annual species, may be more stable and resilient, thus more adequate to face future potential increases in climate variability. Long-term studies to investigate the potential of the native biodiversity or adapted exotic species to design sustainable land use systems should be encouraged.

First Assessment of Carbon Stock in the Belowground Biomass of Brazilian Mangroves.

PubMed

Santos, Daniel M C; Estrada, Gustavo C D; Fernandez, Viviane; Estevam, Marciel R M; Souza, Brunna T DE; Soares, Mário L G

2017-01-01

Studies on belowground roots biomass have increasingly reported the importance of the contribution of this compartment in carbon stock maintenance in mangrove forests. To date, there are no estimates of this contribution in Brazilian mangrove forests, although the country has the second largest area of mangroves worldwide. For this study, trenches dug in fringing forests in Guaratiba State Biological Reserve (Rio de Janeiro, Brazil) were used to evaluate the contribution of the different classes of roots and the vertical stratification of carbon stock. The total carbon stock average in belowground roots biomass in these forests was 104.41 ± 20.73 tC.ha-1. From that, an average of 84.13 ± 21.34 tC.ha-1 corresponded to the carbon stock only in fine roots, which have diameters smaller than 5 mm and are responsible for over 80% of the total belowground biomass. Most of the belowground carbon stock is concentrated in the first 40 cm below the surface (about 70%). The root:shoot ratio in this study is 1.14. These estimates demonstrate that the belowground roots biomass significantly contributes, more than 50%, to the carbon stock in mangrove forests. And the mangrove root biomass can be greater than that of other Brazilian ecosystems.

Heterogeneity and topsoil depletion due to tillage erosion and soil co-extraction with root vegetables: a serious threat to sustainable agricultural land use in the UK

NASA Astrophysics Data System (ADS)

Quine, Timothy; van Oost, Kristof

2010-05-01

The term soil erosion has become almost synonymous with water erosion and yet tillage erosion and soil loss with root crop harvest, although less visible, may be responsible for the majority of the on-site costs of soil erosion in many arable areas of the UK. The study reported here is a first attempt to model soil erosion associated with these processes in England and Wales, at the National scale. A GIS-based modelling approach in the Arc/Info environment is employed in order to meet the requirement for large-scale evaluation of erosion severity. Existing models that have been subject to independent test are used or adapted and widely available data is employed in model parameterisation. Tillage erosion is simulated using a diffusion-type model and a slope curvature index derived from coarse-scale topographic data. The curvature index is calibrated by statistical comparison to curvature values derived from a high resolution digital terrain model. Soil loss with root crop harvest is simulated using information concerning patterns of sugar beet and potato cultivation and estimation of soil moisture during the crop harvest season. Soil loss associated with root crop harvest may be as high as 1 t ha-1 year-1 if land is permanently used for root crops in a 3 year rotation. However, when the arable area of the UK is considered as a whole root crop harvest is responsible for a mean rate of soil loss of approximately 0.1 t ha-1 year-1. Tillage erosion is found to be the dominant process of soil redistribution and onsite erosion on arable land, in comparison with both soil loss through root crop harvest and with long-term water erosion rates. Mean gross rates of tillage erosion were found to be 3.7 t ha-1 year-1, representing approximately 7.4 t ha-1 year-1 erosion and the same rate of deposition. Soil redistribution at these rates is generating an heterogeneous soilscape in which continued functioning for food and fibre production may be jeopardized. These problems may be exacerbated by increased water stress in eroded soils if climate change does, as predicted, result in hotter and drier summers.

The role of phosphorylation in dentin phosphoprotein peptide absorption to hydroxyapatite surfaces: a molecular dynamics study

PubMed Central

Villarreal-Ramirez, Eduardo; Garduño-Juarez, Ramon; Gericke, Arne; Boskey, Adele

2015-01-01

Dentin phosphoprotein (DPP) is a protein expressed mainly in dentin and to a lesser extent in bone. DPP has a disordered structure, rich in glutamic acid, aspartic acid and phosphorylated serine/threonine residues. It has a high capacity for binding to calcium ions and to hydroxyapatite (HA) crystal surfaces. We used molecular dynamics (MD) simulations as a method for virtually screening interactions between DPP motifs and HA. The goal was to determine which motifs are absorbed to HA surfaces. For these simulations, we considered five peptides from the human DPP sequence. All-atom MD simulations were performed using GROMACS, the peptides were oriented parallel to the {100} HA crystal surface, the distance between the HA and the peptide was 3 nm. The system was simulated for 20 ns. Preliminary results show that for the unphosphorylated peptides, the acidic amino acids present an electrostatic attraction where their side chains are oriented towards HA. This attraction, however, is slow to facilitate bulk transport to the crystal surface. On the other hand, the phosphorylated (PP) peptides are rapidly absorbed on the surface of the HA with their centers of mass closer to the HA surface. More importantly, the root mean square fluctuation (RMSF) indicates that the average structures of the phosphorylated peptides are very inflexible and elongate, while that of the unphosphorylated peptides are flexible. Radius of gyration (Rg) analysis showed the compactness of un-phosphorylated peptides is lower than phosphorylated peptides. Phosphorylation of the DPP peptides is necessary for binding to HA surfaces. PMID:25158198

Nutrient Distribution Indicated Whole-Tree Harvesting as a Possible Factor Restricting the Sustainable Productivity of a Poplar Plantation System in China

PubMed Central

Ge, Xiaomin; Tian, Ye; Tang, Luozhong

2015-01-01

We evaluated the biomass and contents of five major macronutrients (N, P, K, Ca and Mg) in 10-year-old poplar trees (Populus deltoids Bartr. cv. “Lux”), and determined their nutrient use efficiencies (NUEs) at Zhoushan Forestry Farm (32°20′ N, 119°40′ E), Jiangsu province, in eastern China. The above- and below-ground biomass of poplar trees was 161.7 t ha-1, of which 53.3% was stemwood. The nutrient contents in the aboveground part were as follows: 415.1 kg N ha-1, 29.7 kg P ha-1, 352.0 kg K ha-1, 1083.0 kg Ca ha-1, and 89.8 kg Mg ha-1. The highest nutrient contents were in stembark, followed by branches, roots, stemwood, and foliage. The NUEs of the aboveground parts of poplar for N, P, K, Ca and Mg were 0.313, 4.377, 0.369, 0.120, 1.448 t dry biomass kg-1 nutrient, respectively, while those of stemwood were 1.294, 33.154, 1.253, 0.667, and 3.328 t dry biomass kg-1, respectively. The cycling coefficients, defined as the percentage of annual nutrient return in annual nutrient uptake, of N, P, K, Ca and Mg for the aboveground part were 87, 95, 69, 92, and 84%, respectively. Based on the NUE and nutrient cycling characteristics, shifting from whole-tree harvesting to stemwood-only harvesting and appropriately extending the harvest rotation could prevent site deterioration and support sustainable productivity of poplar plantation systems. PMID:25992549

Net soil respiration and greenhouse gas balance along a sequence of forest disturbance to smallholder rubber and oil palm plantations in Sumatra

NASA Astrophysics Data System (ADS)

Khusyu Aini, Fitri; Hergoualc'h, Kristell; Smith, Jo; Verchot, Louis; Martius, Christopher

2017-04-01

The rapid increase in demand for land to establish oil palm and rubber plantations has led to the conversion of forests, with potential impacts on greenhouse gas emissions and on climate change. This study evaluates the net greenhouse gas balance following forest change to other land uses, i.e. one year rubber plantation, twenty-year rubber plantation and eight year oil palm plantation on Sumatran mineral soils. None of the plantations had ever been fertilized previously. During this study they were fertilized to provide nitrogen at the recommended rate used by farmers (33.3 kg N ha-1 y-1). The ecosystem stores carbon in litterfall, standing litter biomass (undergrowth vegetation, leaves, twigs, litter on the soil surface), soil organic matter, root biomass, and standing tree biomass. It releases carbon to the atmosphere through soil respiration fluxes, negative values indicating that carbon is stored by the land use change and positive values indicating emissions to the atmosphere. Net soil respiration was assessed using a mass balance approach: standing litter and tree biomass were measured once; the rate of carbon accumulation from standing litter and tree biomass was calculated by dividing the stock by the age of plantation or the time since logging started in the disturbed forest. The carbon accumulation in standing litter, tree biomass in the forest and soil organic matter for all land-uses was estimated from available in the literature. Root biomass for each land-use system was calculated using the root:shoot ratio. The net soil respiration of carbon dioxide from the forest, disturbed forest, one year rubber plantation, twenty-year rubber plantation and oil palm plantation were calculated to be -6 (± 5), 12 (± 6), 11 (± 15), 10 (± 5), 39 (± 7) Mg ha-1 y-1, respectively. Soil nitrous oxide, methane and litterfall were measured for 14 months and respiration fluxes were measured for 5 months across land uses and different seasons. The measured emissions of greenhouse gases were similar across land use systems; for nitrous oxide in the forest, disturbed forest, one year rubber plantation, twenty-year rubber plantation and eight year oil palm plantation, respectively, 17.3 (± 0.2), 1.2 (± 0.1), 1.3 (± 0.2), 1.0 (± 0.1) and 1.0 (± 0.2) kg N ha-1 y-1; for methane, -1.4 (± 1.0), 0.4 (± 0.9), -1.7 (± 0.7), -0.2 (± 0.3) and 0.2 (± 0.7) kg C ha-1 y-1; and for carbon dioxide, 13 (± 1), 13 (± 1), 16 (± 2), 14 (± 1) and 17 (± 2) Mg C ha-1 y-1). The overall greenhouse gas balance in carbon dioxide equivalents was significantly lower in the forest (-5 (± 5) Mg ha-1 y-1) than in the oil palm plantation (40 (± 7) Mg ha-1 y-1). There was no significant difference in the overall greenhouse gas balance of the disturbed forest, one year rubber plantation and twenty-year rubber plantation (12 (± 17) Mg ha-1 y-1), but this was also significantly lower than in the oil palm plantation. The overall results support the assertion that the undisturbed forest conserves carbon dioxide and has a negative greenhouse gas balance, while oil palm plantations lead to net emissions. Keywords: land-use change, global warming potential, carbon flux change, methane, nitrous oxide, carbon dioxide

Humic Acid Confers HIGH-AFFINITY K+ TRANSPORTER 1-Mediated Salinity Stress Tolerance in Arabidopsis.

PubMed

Khaleda, Laila; Park, Hee Jin; Yun, Dae-Jin; Jeon, Jong-Rok; Kim, Min Gab; Cha, Joon-Yung; Kim, Woe-Yeon

2017-12-31

Excessive salt disrupts intracellular ion homeostasis and inhibits plant growth, which poses a serious threat to global food security. Plants have adapted various strategies to survive in unfavorable saline soil conditions. Here, we show that humic acid (HA) is a good soil amendment that can be used to help overcome salinity stress because it markedly reduces the adverse effects of salinity on Arabidopsis thaliana seedlings. To identify the molecular mechanisms of HA-induced salt stress tolerance in Arabidopsis, we examined possible roles of a sodium influx transporter HIGH-AFFINITY K+ TRANSPORTER 1 (HKT1). Salt-induced root growth inhibition in HKT1 overexpressor transgenic plants (HKT1-OX) was rescued by application of HA, but not in wild-type and other plants. Moreover, salt-induced degradation of HKT1 protein was blocked by HA treatment. In addition, the application of HA to HKT1-OX seedlings led to increased distribution of Na+ in roots up to the elongation zone and caused the reabsorption of Na+ by xylem and parenchyma cells. Both the influx of the secondary messenger calcium and its cytosolic release appear to function in the destabilization of HKT1 protein under salt stress. Taken together, these results suggest that HA could be applied to the field to enhance plant growth and salt stress tolerance via post-transcriptional control of the HKT1 transporter gene under saline conditions.

Hair analysis of histamine and several metabolites in C3H/HeNCrj mice by ultra performance liquid chromatography with electrospray ionization time-of-flight mass spectrometry (UPLC-ESI-TOF-MS): influence of hair cycle and age.

PubMed

Kawanishi, Hiroki; Toyo'oka, Toshimasa; Ito, Kenichi; Maeda, Munenori; Hamada, Tomoji; Fukushima, Takeshi; Kato, Masaru; Inagaki, Shinsuke

2007-03-01

According to a previous study, the concentration of HA in the hair of SD rats was similar in each rat and the variation in HA concentration was not so great. However, the concentration in human hair was fairly different in each person. As possible reasons for the higher variation in human hair, the differences in hair cycles and age in each person may be considerable. Based on this idea, the studies using C3H/HeNCrj mice who can synchronize their hair cycle were performed for resolution of the influence of hair cycle and age. The effects of hair cycle and age on the concentration of histamine (HA) and several metabolites, i.e., 1-methylhistamine (MHA), imidazole-4-acetic acid (IAA), and 1-methyl-4-imidazole-acetic acid (MIAA), in C3H/HeNCrj mice hair were investigated by ultra-performance liquid chromatography (UPLC) with electrospray ionization time-of-flight mass spectrometry (ESI-TOF-MS). HA and the metabolites were labeled with 4-(N,N-dimethylaminosulfonyl)-7-fluoro-2,1,3-benzoxadiazole (DBD-F) and 4-(N,N-dimethylaminosulfonyl)-7-piperazino-2,1,3-benzoxadiazole (DBD-PZ). The resulting derivatives were separated by UPLC and determined with ESI-TOF-MS. A good linearity was achieved from the calibration curves, obtained by plotting the peak area ratios of the analytes relative to the internal standard (IS), i.e., histamine-alpha,alpha,beta,beta-d4 (HA-d4) or 4-imidazolecarboxylic acid (ICA), against the injected amounts of each compound. The detection limits of HA, MHA, IAA, and MIAA on mass chromatograms were 0.21, 1.0, 0.17, and 0.11 pmol, respectively. The concentrations of HA and the metabolites in the hair shafts and hair root of C3H/HeNCrj mice were determined by this method. The concentration of HA in the hair shaft was relatively higher in the telogen phase. In contrast, the HA content in the anagen phase was increased only in the hair root of old mice. HA appears to possess some effect on hair growth, although the exact reason was not obvious. The HA metabolites, i.e., MHA, MIAA and IAA, were also determined the same as HA; however, the difference in the metabolite concentrations between the hair cycle and age was not clear in both hair shaft and hair root. Such studies of the effect of hair cycle and age on these concentrations are the first report. This analytical technique may be applicable to the determination of various biological compounds in hair.

Response of “Alamo” switchgrass tissue chemistry and biomass to nitrogen fertilization in West Tennessee, USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garten, Charles T.; Brice, Deanne J.; Castro, Hector F.

2011-01-01

Switchgrass (Panicum virgatum) is a perennial, warm-season grass that has been identified as a potential biofuel feedstock over a large part of North America. We examined above- and belowground responses to nitrogen fertilization in “Alamo” switchgrass grown in West Tennessee, USA. The fertilizer study included a spring and fall sampling of 5-year old switchgrass grown under annual applications of 0, 67, and 202 kg N ha -1 (as ammonium nitrate). Fertilization changed switchgrass biomass allocation as indicated by root:shoot ratios. End-of-growing season root:shoot ratios (mean ± SE) declined significantly (P ≤ 0.05) at the highest fertilizer nitrogen treatment (2.16 ±more » 0.08, 2.02 ± 0.18, and 0.88 ± 0.14, respectively, at 0, 67, and 202 kg N ha -1). Fertilization also significantly increased above- and belowground nitrogen concentrations and decreased plant C:N ratios. Data are presented for coarse live roots, fine live roots, coarse dead roots, fine dead roots, and rhizomes. At the end of the growing season, there was more carbon and nitrogen stored in belowground biomass than aboveground biomass. Finally, fertilization impacted switchgrass tissue chemistry and biomass allocation in ways that potentially impact soil carbon cycle processes and soil carbon storage.« less

Beneficial effects of humic acid on micronutrient availability to wheat

NASA Technical Reports Server (NTRS)

Mackowiak, C. L.; Grossl, P. R.; Bugbee, B. G.

2001-01-01

Humic acid (HA) is a relatively stable product of organic matter decomposition and thus accumulates in environmental systems. Humic acid might benefit plant growth by chelating unavailable nutrients and buffering pH. We examined the effect of HA on growth and micronutrient uptake in wheat (Triticum aestivum L.) grown hydroponically. Four root-zone treatments were compared: (i) 25 micromoles synthetic chelate N-(4-hydroxyethyl)ethylenediaminetriacetic acid (C10H18N2O7) (HEDTA at 0.25 mM C); (ii) 25 micromoles synthetic chelate with 4-morpholineethanesulfonic acid (C6H13N4S) (MES at 5 mM C) pH buffer; (iii) HA at 1 mM C without synthetic chelate or buffer; and (iv) no synthetic chelate or buffer. Ample inorganic Fe (35 micromoles Fe3+) was supplied in all treatments. There was no statistically significant difference in total biomass or seed yield among treatments, but HA was effective at ameliorating the leaf interveinal chlorosis that occurred during early growth of the nonchelated treatment. Leaf-tissue Cu and Zn concentrations were lower in the HEDTA treatment relative to no chelate (NC), indicating HEDTA strongly complexed these nutrients, thus reducing their free ion activities and hence, bioavailability. Humic acid did not complex Zn as strongly and chemical equilibrium modeling supported these results. Titration tests indicated that HA was not an effective pH buffer at 1 mM C, and higher levels resulted in HA-Ca and HA-Mg flocculation in the nutrient solution.

Root disease and other unforeseen variables that confound restoration efforts

Treesearch

William J. Otrosina; Shi-Jean S. Sung; Stanley J. Zarnoch; Brian T. Sullivan; Charles H. Walkinshaw

2002-01-01

Unanticipated disease problems thwarting restoration efforts can emerge in forest ecosystems. An example is the longleaf pine (Pinus palustris Mill.) ecosystem. This species once occupied nearly 30 million ha but now its range is reduced to approximately 1.5 million ha. Restoring longleaf pine to many sites in its former range is an important goal...

Acetylene reduction (nitrogen fixation) associated with corn inoculated with Spirillum.

PubMed

Barber, L E; Tjepkema, J D; Russell, S A; Evans, H J

1976-07-01

Sorghum and corn breeding lines were grown in soil in field and greenhouse experiments with and without an inoculum of N2-fixing in Spirillum strains from Brazil. Estimated rates of N2 fixation associated with field-grown corn and sorghum plants were less than 4 g of N2/ha per day. The mean estimated N2-fixation rates determined on segments of roots from corn inoculated with Spirillum and grown in the greenhouse at 24 to 27 degrees C were 15 g of N2/ha per day (16 inbreds), 25 g of N2/ha per day (six hybrids), and 165 g of N2/ha per day for one hybird which was heavily inoculated. The corresponding mean rates determined from measurements of in situ cultures of the same series of corn plants (i.e., 16 inbreds, six hybrids, and one heavily inoculated hybrid) were 0.4, 2.3, and 1.1 g of N2/ha per day, respectively. Lower rates of C2H2 reduction were associated with control corn cultures which had been treated with autoclaved Spirillum than with cultures inoculated with live Spirillum. No C2H2 reduction was detected in plant cultures treated with ammonium nitrate. Numbers of nitrogen-fixing bacteria on excised roots of corn plants increased an average of about 30-fold during an overnight preincubation period, and as a result acetylene reduction assays of root samples after preincubation failed to serve as a valid basis for estimating N2 fixation by corn in pot cultures. Plants grown without added nitrogen either with or without inoculum exhibited severe symptoms of nitrogen deficiency and in most cases produced significantly less dry weight than those supplied with fixed nitrogen. Although substantial rates of C2H2 reduction by excised corn roots were observed after preincubation under limited oxygen, the yield and nitrogen content of inoculated plants and the C2H2-reduction rates by inoculated pot cultures of corn, in situ, provided no evidence of appreciable N2 fixation.

Influence of nitrogen and phosphorus sources on mycorrhizal lettuces under organic farming

NASA Astrophysics Data System (ADS)

Scotti, Riccardo; Seguel, Alex; Cornejo, Pablo; Rao, Maria A.; Borie, Fernando

2010-05-01

Arbuscular mycorrhizal fungi (AMF) develop symbiotic associations with plants roots. These associations are very common in the natural environment and can provide a range of benefits to the host plant. AMF improve nutrition, enhance resistance to soil-borne pests and disease, increase resistance to drought and tolerance to heavy metals, and contribute to a better soil structure. However, agricultural intensive managements, such as the use of mineral fertilizes, pesticides, mouldboard tillage, monocultures and use of non-mycorrhizal crops, are detrimental to AMF. As a consequence, agroecosystems are impoverished in AMF and may not provide the full range of benefits to the crop. Organic farming systems may be less unfavourable to AMF because they exclude the use of water-soluble fertilisers and most pesticides, and generally they plan diverse crop rotations. The AMF develop the most common type of symbiosis in nature: about 90% of the plants are mycorrhizal and many agricultural crops are mycorrhizal. One of more mycorrhizal crops is lettuce, that is very widespread in intensive agricultural under greenhouse. Therefore, cultivated lettuce is know to be responsive to mycorrhizal colonization which can reach 80% of root length and contribute to phosphorus and nitrogen absorption by this plant specie. For this work four different lettuce cultivars (Romana, Milanesa, Grande Lagos and Escarola) were used to study mycorrhization under organic agricultural system, supplying compost from agricultural waste (1 kg m-2) as background fertilization for all plots, red guano as phosphorus source (75 U ha-1 and 150 U ha-1 of P2O5), lupine flour as nitrogen source (75 and 150 U/ha of N) and a combination of both. Lettuce plants were cultivated under greenhouse and after two months of growing, plants were harvested and dried and fresh weight of lettuce roots and shoots were evaluated. The number of spores, percentage of colonization, total mycelium and glomalin content were also evaluated as mycorrhizal parameters. The results showed a different response to mycorrhization of the four lettuce Cvs. In general, mycorrhized lettuce plants had a better response to lower level of nitrogen and phosphorus sources.

Modeling of phosphorus loads in sugarcane in a low-relief landscape using ontology-based simulation.

PubMed

Kwon, Ho-Young; Grunwald, Sabine; Beck, Howard W; Jung, Yunchul; Daroub, Samira H; Lang, Timothy A; Morgan, Kelly T

2010-01-01

Water flow and P dynamics in a low-relief landscape manipulated by extensive canal and ditch drainage systems were modeled utilizing an ontology-based simulation model. In the model, soil water flux and processes between three soil inorganic P pools (labile, active, and stable) and organic P are represented as database objects. And user-defined relationships among objects are used to automatically generate computer code (Java) for running the simulation of discharge and P loads. Our objectives were to develop ontology-based descriptions of soil P dynamics within sugarcane- (Saccharum officinarum L.) grown farm basins of the Everglades Agricultural Area (EAA) and to calibrate and validate such processes with water quality monitoring data collected at one farm basin (1244 ha). In the calibration phase (water year [WY] 99-00), observed discharge totaled 11,114 m3 ha(-1) and dissolved P 0.23 kg P ha(-1); and in the validation phase (WY 02-03), discharge was 10,397 m3 ha(-1) and dissolved P 0.11 kg P ha(-). During WY 99-00 the root mean square error (RMSE) for monthly discharge was 188 m3 ha(-1) and for monthly dissolved P 0.0077 kg P ha(-1); whereas during WY 02-03 the RMSE for monthly discharge was 195 m3 ha(-1) and monthly dissolved P 0.0022 kg P ha(-1). These results were confirmed by Nash-Sutcliffe Coefficient of 0.69 (calibration) and 0.81 (validation) comparing measured and simulated P loads. The good model performance suggests that our model has promise to simulate P dynamics, which may be useful as a management tool to reduce P loads in other similar low-relief areas.

The root application of a purified leonardite humic acid modifies the transcriptional regulation of the main physiological root responses to Fe deficiency in Fe-sufficient cucumber plants.

PubMed

Aguirre, Elena; Elena, Aguirre; Leménager, Diane; Diane, Leménager; Bacaicoa, Eva; Eva, Bacaicoa; Fuentes, Marta; Marta, Fuentes; Baigorri, Roberto; Roberto, Baigorri; Zamarreño, Angel Ma; García-Mina, José Ma

2009-03-01

The aim of this study is to investigate the effect of a well-characterized purified humic acid (non-measurable concentrations of the main plant hormones were detected) on the transcriptional regulation of the principal molecular agents involved in iron assimilation. To this end, non-deficient cucumber plants were treated with different concentrations of a purified humic acid (PHA) (2, 5, 100 and 250 mg of organic carbonL(-1)) and harvested 4, 24, 48, 76 and 92 h from the onset of the treatment. At harvest times, the mRNA transcript accumulation of CsFRO1 encoding for Fe(III) chelate-reductase (EC 1.16.1.7); CsHa1 and CsHa2 encoding for plasma membrane H+-ATPase (EC 3.6.3.6); and CsIRT1 encoding for Fe(II) high-affinity transporter, was quantified by real-time RT-PCR. Meanwhile, the respective enzyme activity of the Fe(III) chelate-reductase and plasma membrane H+-ATPase was also investigated. The results obtained indicated that PHA root treatments affected the regulation of the expression of the studied genes, but this effect was transient and differed (up-regulation or down-regulation) depending on the genes studied. Thus, principally the higher doses of PHA caused a transient increase in the expression of the CsHa2 isoform for 24 and 48 h whereas the CsHa1 isoform was unaffected or down-regulated. These effects were accompanied by an increase in the plasma membrane H+-ATPase activity for 4, 48 and 96 h. Likewise, PHA root treatments (principally the higher doses) up-regulated CsFRO1 and CsIRT1 expression for 48 and 72 h; whereas these genes were down-regulated by PHA for 96 h. These effects were associated with an increase in the Fe(III) chelate-reductase activity for 72 h. These effects were not associated with a significant decrease in the Fe root or leaf concentrations, although an eventual effect on the Fe root assimilation pattern cannot be ruled out. These results stress the close relationships between the effects of humic substances on plant development and iron nutrition. However, further studies are needed in order to elucidate if these effects at molecular level are caused by mechanisms involving hormone-like actions and/or nutritional factors.

Fine root dynamics along an elevational gradient in tropical Amazonian and Andean forests

NASA Astrophysics Data System (ADS)

Girardin, C. A. J.; Aragão, L. E. O. C.; Malhi, Y.; Huaraca Huasco, W.; Metcalfe, D. B.; Durand, L.; Mamani, M.; Silva-Espejo, J. E.; Whittaker, R. J.

2013-01-01

The key role of tropical forest belowground carbon stocks and fluxes is well recognised as one of the main components of the terrestrial ecosystem carbon cycle. This study presents the first detailed investigation of spatial and temporal patterns of fine root stocks and fluxes in tropical forests along an elevational gradient, ranging from the Peruvian Andes (3020 m) to lowland Amazonia (194 m), with mean annual temperatures of 11.8°C to 26.4 °C and annual rainfall values of 1900 to 1560 mm yr-1, respectively. Specifically, we analyse abiotic parameters controlling fine root dynamics, fine root growth characteristics, and seasonality of net primary productivity along the elevation gradient. Root and soil carbon stocks were measured by means of soil cores, and fine root productivity was recorded using rhizotron chambers and ingrowth cores. We find that mean annual fine root below ground net primary productivity in the montane forests (0-30 cm depth) ranged between 4.27±0.56 Mg C ha-1 yr-1 (1855 m) and 1.72±0.87 Mg C ha-1 yr-1 (3020 m). These values include a correction for finest roots (<0.6 mm diameter), which we suspect are under sampled, resulting in an underestimation of fine roots by up to 31% in current ingrowth core counting methods. We investigate the spatial and seasonal variation of fine root dynamics using soil depth profiles and an analysis of seasonal amplitude along the elevation gradient. We report a stronger seasonality of NPPFineRoot within the cloud immersion zone, most likely synchronised to seasonality of solar radiation. Finally, we provide the first insights into root growth characteristics along a tropical elevation transect: fine root area and fine root length increase significantly in the montane cloud forest. These insights into belowground carbon dynamics of tropical lowland and montane forests have significant implications for our understanding of the global tropical forest carbon cycle.

Phytoextraction of lead-contaminated soil using vetivergrass (Vetiveria zizanioides L.), cogongrass (Imperata cylindrica L.) and carabaograss (Paspalum conjugatum L.).

PubMed

Paz-Alberto, Annie Melinda; Sigua, Gilbert C; Baui, Bellrose G; Prudente, Jacqueline A

2007-11-01

The global problem concerning contamination of the environment as a consequence of human activities is increasing. Most of the environmental contaminants are chemical by-products and heavy metals such as lead (Pb). Lead released into the environment makes its way into the air, soil and water. Lead contributes to a variety of health effects such as decline in mental, cognitive and physical health of the individual. An alternative way of reducing Pb concentration from the soil is through phytoremediation. Phytoremediation is an alternative method that uses plants to clean up a contaminated area. The objectives of this study were: (1) to determine the survival rate and vegetative characteristics of three grass species such as vetivergrass, cogongrass and carabaograss grown in soils with different Pb levels; and (2) to determine and compare the ability of the three grass species as potential phytoremediators in terms of Pb accumulation by plants. The three test plants: vetivergrass (Vetiveria zizanioides L.); cogongrass (Imperata cylindrica L.); and carabaograss (Paspalum conjugatum L.) were grown in individual plastic bags containing soils with 75 mg kg(-1) (37.5 kg ha(-1)) and 150 mg kg(-1) (75 kg ha(-1)) of Pb, respectively. The Pb contents of the test plants and the soil were analyzed before and after experimental treatments using an atomic absorption spectrophotometer. This study was laid out following a 3 x 2 factorial experiment in a completely randomized design. On the vegetative characteristics of the test plants, vetivergrass registered the highest whole plant dry matter weight (33.85-39.39 Mg ha(-1)). Carabaograss had the lowest herbage mass production of 4.12 Mg ha(-1) and 5.72 Mg ha(-1) from soils added with 75 and 150 mg Pb kg(-1), respectively. Vetivergrass also had the highest percent plant survival which meant it best tolerated the Pb contamination in soils. Vetivergrass registered the highest rate of Pb absorption (10.16 +/- 2.81 mg kg(-1)). This was followed by cogongrass (2.34 +/- 0.52 mg kg(-1)) and carabaograss with a mean Pb level of 0.49 +/- 0.56 mg kg(-1). Levels of Pb among the three grasses (shoots + roots) did not vary significantly with the amount of Pb added (75 and 150 mg kg(-1)) to the soil. Vetivergrass yielded the highest biomass; it also has the greatest amount of Pb absorbed (roots + shoots). This can be attributed to the highly extensive root system of vetivergrass with the presence of an enormous amount of root hairs. Extensive root system denotes more contact to nutrients in soils, therefore more likelihood of nutrient absorption and Pb uptake. The efficiency of plants as phytoremediators could be correlated with the plants' total biomass. This implies that the higher the biomass, the greater the Pb uptake. Plants characteristically exhibit remarkable capacity to absorb what they need and exclude what they do not need. Some plants utilize exclusion mechanisms, where there is a reduced uptake by the roots or a restricted transport of the metals from root to shoots. Combination of high metal accumulation and high biomass production results in the most metal removal from the soil. The present study indicated that vetivergrass possessed many beneficial characteristics to uptake Pb from contaminated soil. It was the most tolerant and could grow in soil contaminated with high Pb concentration. Cogongrass and carabaograss are also potential phytoremediators since they can absorb small amount of Pb in soils, although cogongrass is more tolerant to Pb-contaminated soil compared with carabaograss. The important implication of our findings is that vetivergrass can be used for phytoextraction on sites contaminated with high levels of heavy metals, particularly Pb. High levels of Pb in localized areas are still a concern especially in urban areas with high levels of traffic, near Pb smelters, battery plants, or industrial facilities that burn fuel ending up in water and soils. The grasses used in the study, and particularly vetivergrass, can be used to phytoremediate urban soil with various contaminations by planting these grasses in lawns and public parks.

FOREST-BGC, A general model of forest ecosystem processes for regional applications. II. Dynamic carbon allocation and nitrogen budgets.

PubMed

Running, Steven W.; Gower, Stith T.

1991-01-01

A new version of the ecosystem process model FOREST-BGC is presented that uses stand water and nitrogen limitations to alter the leaf/root/stem carbon allocation fraction dynamically at each annual iteration. Water deficit is defined by integrating a daily soil water deficit fraction annually. Current nitrogen limitation is defined relative to a hypothetical optimum foliar N pool, computed as maximum leaf area index multiplied by maximum leaf nitrogen concentration. Decreasing availability of water or nitrogen, or both, reduces the leaf/root carbon partitioning ratio. Leaf and root N concentrations, and maximum leaf photosynthetic capacity are also redefined annually as functions of nitrogen availability. Test simulations for hypothetical coniferous forests were performed for Madison, WI and Missoula, MT, and showed simulated leaf area index ranging from 4.5 for a control stand at Missoula, to 11 for a fertilized stand at Madison, with Year 50 stem carbon biomasses of 31 and 128 Mg ha(-1), respectively. Total nitrogen incorporated into new tissue ranged from 34 kg ha(-1) year(-1) for the unfertilized Missoula stand, to 109 kg ha(-1) year(-1) for the fertilized Madison stand. The model successfully showed dynamic annual carbon partitioning controlled by water and nitrogen limitations.

Carbon cycling and net ecosystem production at an early stage of secondary succession in an abandoned coppice forest.

PubMed

Ohtsuka, Toshiyuki; Shizu, Yoko; Nishiwaki, Ai; Yashiro, Yuichiro; Koizumi, Hiroshi

2010-07-01

Secondary mixed forests are one of the dominant forest cover types in human-dominated temperate regions. However, our understanding of how secondary succession affects carbon cycling and carbon sequestration in these ecosystems is limited. We studied carbon cycling and net ecosystem production (NEP) over 4 years (2004-2008) in a cool-temperate deciduous forest at an early stage of secondary succession (18 years after clear-cutting). Net primary production of the 18-year-old forest in this study was 5.2 tC ha(-1 )year(-1), including below-ground coarse roots; this was partitioned into 2.5 tC ha(-1 )year(-1) biomass increment, 1.6 tC ha(-1 )year(-1) foliage litter, and 1.0 tC ha(-1 )year(-1) other woody detritus. The total amount of annual soil surface CO(2) efflux was 6.8 tC ha(-1 )year(-1), which included root respiration (1.9 tC ha(-1 )year(-1)) and heterotrophic respiration (RH) from soils (4.9 tC ha(-1 )year(-1)). The 18-year forest at this study site exhibited a great increase in biomass pool as a result of considerable total tree growth and low mortality of tree stems. In contrast, the soil organic matter (SOM) pool decreased markedly (-1.6 tC ha(-1 )year(-1)), although further study of below-ground detritus production and RH of SOM decomposition is needed. This young 18-year forest was a weak carbon sink (0.9 tC ha(-1 )year(-1)) at this stage of secondary succession. The NEP of this 18-year forest is likely to increase gradually because biomass increases with tree growth and with the improvement of the SOM pool through increasing litter and dead wood production with stand development.

Effects of biogas digestate on soil properties and plant growth

NASA Astrophysics Data System (ADS)

Gulyás, Miklós; Füleky, György

2013-04-01

Farming methods and food industries generate large amounts manure and other useful raw materials that need safe disposal. Following the international trends great numbers of biogas plants were opened during the last few years in Hungary. However this issue presents a number of new questions, including the subsequent use of anaerobic fermentation residues. So far we have only limited information about it's agricultural applications. Farmers and authorities are very skeptic because feedstocks are very different so the endproduct will be different, too. However, this endproduct can be applied as fertilizer. The aim of our work is to determine the effects of this product in plant-soil system. Digestate contains high amount of nitrogen which is present mainly ammonium form and this form can cause root depression and lower germination rates. Pot experiments were established with different rates of nitrogen content (80 kg ha-1N, 120 kg ha-1N, 170 kg ha-1N, and control). Maximum rates were determine by the Nitrate Directive. Soil moisture was 60% of maximum of water capacity. Digestate and distilled water were homogenized and added to 200g loamy soil. Rye-grass (Lolium perenne) was applied as a test plant. Treatments were randomized design and 10 replications. Three pot from each treatment were used to observe the germination and progress of plants. We investigated the effect of the digestate on nitrate- and ammonium-ion content of soil. The amount of nitrate- and ammonium-N of soil was determine with distillation. The ammonium-N levels increased with the doses on the first day but on the sixth-seventh day this amount totally falled down, because NH4-N transformed to NO3-N. Nitrate level increased continuously untill the tenth day, later decreased as the result of the plant and microbes consumption. The increasing doses inhibited the germination and root development of the plants. We experienced fewer roots, which were different form control.

Effect of water regimes and organic matters on transport of arsenic in summer rice (Oryza sativa L.).

PubMed

Rahaman, Sefaur; Sinha, Ashim Chandra; Mukhopadhyay, Dibyendu

2011-01-01

The arsenic contamination in soil-water-plant systems is a major concern of where, the groundwater is being contaminated with arsenic (above 0.01 mg/L) in the Indian subcontinent. The study was conducted with organic matter to find out the reducing effect on arsenic load to rice (cv. Khitish). It was observed that intermittent ponding reduced arsenic uptake (23.33% in root, 13.84% in shoot and 19.84% in leaf) at panicle initiation stage, instead of continuous ponding. A decreasing trend of arsenic accumulation (root > straw > husk > whole grain > milled grain) was observed in different plant parts at harvest. Combined applications of lathyrus + vermicompost + poultry manure reduced arsenic transport in plant parts (root, straw, husk, whole grains and milled grain) which was significantly at par (p > 0.05) with chopped rice straw (5 tons/ha) + lathyrus green manuring (5 tons/ha) in comparison to control and corresponding soils. A significant negative correlation of arsenic with phosphorus (grain P with arsenic in different parts R2= 0.627-0.726 at p > 0.01) was observed. Similarly, soil arsenic had a negative correlation with soil available phosphorus (R2 = 0.822 at p > 0.001) followed by soil nitrogen (R2 = 0.762 at p > 0.01) and soil potassium (R2 = 0.626 at p > 0.01). Hence, effective management of contaminated irrigation water along with organic matter could reduce the arsenic build up to plants and soil.

The role of beta-ketoacyl-acyl carrier protein synthase III in the condensation steps of fatty acid biosynthesis in sunflower.

PubMed

González-Mellado, Damián; von Wettstein-Knowles, Penny; Garcés, Rafael; Martínez-Force, Enrique

2010-05-01

The beta-ketoacyl-acyl carrier protein synthase III (KAS III; EC 2.3.1.180) is a condensing enzyme catalyzing the initial step of fatty acid biosynthesis using acetyl-CoA as primer. To determine the mechanisms involved in the biosynthesis of fatty acids in sunflower (Helianthus annuus L.) developing seeds, a cDNA coding for HaKAS III (EF514400) was isolated, cloned and sequenced. Its protein sequence is as much as 72% identical to other KAS III-like ones such as those from Perilla frutescens, Jatropha curcas, Ricinus communis or Cuphea hookeriana. Phylogenetic study of the HaKAS III homologous proteins infers its origin from cyanobacterial ancestors. A genomic DNA gel blot analysis revealed that HaKAS III is a single copy gene. Expression levels of this gene, examined by Q-PCR, revealed higher levels in developing seeds storing oil than in leaves, stems, roots or seedling cotyledons. Heterologous expression of HaKAS III in Escherichia coli altered their fatty acid content and composition implying an interaction of HaKAS III with the bacterial FAS complex. Testing purified HaKAS III recombinant protein by adding to a reconstituted E. coli FAS system lacking condensation activity revealed a novel substrate specificity. In contrast to all hitherto characterized plant KAS IIIs, the activities of which are limited to the first cycles of intraplastidial fatty acid biosynthesis yielding C6 chains, HaKAS III participates in at least four cycles resulting in C10 chains.

Fine root dynamics in a developing Populus deltoides plantation

Treesearch

Christel C. Kern; Jane M.-F. Johnson; Mark D. Coleman

2004-01-01

A closely spaced (1 x 1 m) cottonwood (Populus deltoides Bartr.) plantation was established to evaluate the effects of nutrient availability on fine root dynamics. Slow-release fertilizer (17:6:12 N,P,K plus micronutrients) was applied to 225-m2 plots at 0,50,10O and 200 kg N ha-1, and plots were...

Fine root dynamics in a developing Populus deltoides plantation

Treesearch

Christel C. Kern; Alexander L. Friend; Jane M. Johnson; Mark D. Coleman

2004-01-01

A closely spaced (1 x 1 m) cottonwood (Populus deltoides Bartr.) platation was established to evaluate the effects of nutrient availability on fine root dynamics. Slow-release fertilizer (17:6:12 N,P,K plus micronutrients) was applied to 225-m2 plots at 0, 50, 100, 200 kg N ha-1, and plots were monitored...

Long-Term Simulated Atmospheric Nitrogen Deposition Alters ...

EPA Pesticide Factsheets

Atmospheric nitrogen deposition has been suggested to increase forest carbon sequestration across much of the Northern Hemisphere; slower organic matter decomposition could contribute to this increase. At four sugar maple (Acer saccharum)-dominated northern hardwood forests, we previously observed that 10 years of chronic simulated nitrogen deposition (30 kg N ha-1 yr-1) increased soil organic carbon. Over three years at these sites, we investigated the effects of nitrogen additions on decomposition of two substrates with documented differences in biochemistry: leaf litter (more labile) and fine roots (more recalcitrant). Further, we combined decomposition rates with annual leaf and fine root litter production to estimate how nitrogen additions altered the accumulation of soil organic matter. Nitrogen additions marginally stimulated early-stage decomposition of leaf litter, a substrate with little acid-insoluble material (e.g., lignin). In contrast, nitrogen additions inhibited the late stage decomposition of fine roots, a substrate with high amount of acid insoluble material and a change consistent with observed decreases in lignin-degrading enzyme activities with nitrogen additions at these sites. At the ecosystem scale, the slower fine root decomposition led to additional root mass retention (g m-2), which explained 5, 48, and 52 % of previously-documented soil carbon accumulation due to nitrogen additions. Our results demonstrated that nitrogen deposition ha

Soil respiration and root biomass responses to burning in calabrian pine (Pinus brutia) stands in Edirne, Turkey.

PubMed

Tufekcioglu, Aydin; Kucuk, Mehmet; Bilmis, Tuncay; Altun, Lokman; Yilmaz, Murat

2010-01-01

In this study soil properties and root biomass responses to prescribed fire were investigated in 25-30 year-old calabrian pine (Pinus brutia Ten.) stands in Edirne, Turkey. The stands were established by planting and were subjected to prescribed burning in July 2005. Soil respiration rates were determined every two months using the soda-lime method over a two-year period. Fine (> or = 2 mm diameter) and small root (> 2-5 mm diameter) biomass were sampled approximately bimonthly using the sequential coring method. Soil respiration rates in burned sites were significantly higher than in control sites during the summer season but there was no significant difference in the other seasons. Soil respiration rates were correlated significantly with soil moisture and soil temperature. Fine and small root biomass were significantly lower in burned sites than in control sites. Mean fine root biomass values were 3204 kg ha(-1) for burned and 3772 kg ha(-1) for control sites. Annual soil CO2 releases totaled 515 g Cm(-2) for burned and 418 g C m(-2) for control sites. Our results indicate that, depending on site conditions, fire could be used successfully as a tool in the management of calabrian pine stands in the study area.

[Mitigating the repress of cinnamic acid to cucumber growth by microbial strain].

PubMed

Yu, Guo-hui; Xie, Yin-hua; Chen, Yan-hong; Chen, Yuan-feng; Cheng, Ping

2006-12-01

Cucumber is one of the most important vegetable species. Its continuous planting has become a common practice demand in many areas of China, but an obstacle from continuous planting made sustainable production of this crop to be prohibited. The self-toxic effect was considered as an important negative factor to continuous cropping cucumber. And cinnamic acid was found to be the main substance to cause self-toxic. Strain Ha8, which isolated from waste water estuary in Zhuhai city and has been authenticated as Cellulosimicrobium cellulans, was found to be able to degrade cinnamic acid, benzoic acid, paraaminobenzoic acid and phenol. Its biologic degrading rate to cinnamic acid was 64.1% and its total degrading rate to cinnamic acid was 79.32% . Therefore, strain Ha8 was used to mitigate the growth stress of cucumber caused by cinnamic acid in the research. In the experiment by hydroponic culturing method, it was found that the stem length, root length, stem weight, leaf weight, root weight, numbers of flower and harvest weight of cucumbers were lower than those untreated ones when added 2micromol/L or 10micromol/L cinnamic acid in culturing solution. But when added 10(7)cfu/L of strain Ha8 and 2micromol/L or 10micromol/L cinnamic acid in same culturing solution, these parameters were higher than those treated only by 2mircomol/L or 10micromol/L cinnamic acid. The result shown that strain Ha8 could mitigate the self-toxic effect caused by cinnamic acid. In edaphic culturing experiments, it was found that organic fertilizer mixed with strain Ha8 could mitigate the growth stress of cucumber caused by 100mg/kg cinnamic acid. When added 3mg/kg sterilized organic fertilizer with strain Ha8 (> or = 10(6)cfu/g dry organic fertilizer) in the culturing soil, the result was satisfied. This treatment could not only improve the growth of cucumber, enhance their root dehydrogenase activity and output, promote their nutrition absorption rate, but also adjust the microbial groups in nonrhizospheric soil of cucumber, increase the number of beneficial bacteria and actinomycete, decrease the number of fungi.

Hyaluronic Acid Improves Bone Formation in Extraction Sockets With Chronic Pathology: A Pilot Study in Dogs.

PubMed

Kim, Jung-Ju; Song, Hyun Young; Ben Amara, Heithem; Kyung-Rim, Kang; Koo, Ki-Tae

2016-07-01

Previous studies on ridge preservation focusing on fresh extraction sockets using graft materials for ridge preservation procedures have reported a delay in the tissue modeling and remodeling phases. The objective of this study is to evaluate the effect of hyaluronic acid (HA) on healing of infected sockets. Six beagle dogs were used in this study. Both mandibular third premolars were hemisected, and the distal roots were extracted. Subsequently, periodontal and endodontic lesions were induced at the remaining mesial root. After communication of the periodontal lesion, an endodontic periapical lesion was observed at 4 months, and the mesial roots of both the right and left sides were extracted. HA was applied into the socket of the test group, and no treatment was administered to the other group (control group). Three months after extraction of the mesial roots, the dogs were sacrificed, and histologic evaluations were performed. The sockets were filled by mineralized bone (47.80% ± 6.60%) and bone marrow (50.47% ± 6.38%) in the control group, whereas corresponding values were 63.29% ± 9.78% and 34.73% ± 8.97% for the test group, respectively. There was a statistically significant difference between the groups. Reversal lines and a copious lineup of osteoblasts were observed in the middle and apical parts of the sockets in the test group. An infected socket shows delayed healing of the socket wound, and HA, because of its osteoinductive, bacteriostatic, and anti-inflammatory properties, may improve bone formation and accelerate wound healing in infected sockets.

Carbon stocks and fluxes in managed peatlands in northern Borneo

NASA Astrophysics Data System (ADS)

Arn Teh, Yit; Manning, Frances; Cook, Sarah; Zin Zawawi, Norliyana; Sii, Longwin; Hill, Timothy; Page, Susan; Whelan, Mick; Evans, Chris; Gauci, Vincent; Chocholek, Melanie; Khoon Kho, Lip

2017-04-01

Oil palm is the largest agricultural crop in the tropics and accounts for 13 % of current tropical land area. Patterns of land-atmosphere exchange from oil palm ecosystems therefore have potentially important implications for regional and global C budgets due to the large scale of land conversion. This is particularly true for oil palm plantations on peat because of the large C stocks held by tropical peat soils that are potential sensitivity to human disturbance. Here we report preliminary findings on C stocks and fluxes from a long-term, multi-scale project in Sarawak, Malaysia that aims to quantify the impacts of oil palm conversion on C and greenhouse gas fluxes from oil palm recently established on peat. Land-atmosphere fluxes were determined using a combination of top-down and bottom-up methods (eddy covariance, canopy/stem and soil flux measurements, net primary productivity). Fluvial fluxes were determined by quantifying rates of dissolved and particulate organic C export. Ecosystem C dynamics were determined using the intensive C plot method, which quantified all major C stocks and fluxes, including plant and soil stocks, leaf litterfall, aboveground biomass production, root production, stem/canopy respiration, root-rhizosphere respiration, and heterotrophic soil respiration. Preliminary analysis indicates that vegetative aboveground biomass in these 7 year old plantations was 8.9-11.9 Mg C ha-1, or approximately one-quarter of adjacent secondary forest. Belowground biomass was 5.6-6.5 Mg C ha-1; on par with secondary forests. Soil C stocks in the 0-30 cm depth was 233.1-240.8 Mg C ha-1, or 32-36% greater than soil C stocks in secondary forests at the same depth (176.8 Mg C ha-1). Estimates of vegetative aboveground and belowground net primary productivity were 1.3-1.7 Mg C ha-1 yr-1 and 0.8-0.9 Mg C ha-1 yr-1, respectively. Fruit brunch production was approximately 67 Mg C ha-1over 7 yearsor 9.6 Mg C ha-1 yr-1. Total soil respiration rates were 18 Mg C ha-1 yr-1, with 26 % accounted for by root-rhizosphere respiration and 74 % from heterotrophic soil respiration. This translates to a peat mineralization rate of 10 to 17 Mg C ha-1 yr-1 in the upper 35 cm soil depth above the water table. Fluvial C fluxes were 1.9 Mg C ha-1yr-1, or roughly three times the flux from secondary forest. Findings from the partitioned soil respiration and fluvial flux measurements indicate that peat mineralization may be occurring. However, it is unclear if this represents a net loss of C from the ecosystem, due to the apparent increase in soil C stocks following land conversion, rather than an expected net reduction in soil C. This unexpected finding implies that other processes may be offsetting C losses from heterotrophic decay and fluvial exchange.

Early changes in arbuscular mycorrhiza development in sugarcane under two harvest management systems.

PubMed

de Azevedo, Lucas Carvalho Basilio; Stürmer, Sidney Luiz; Lambais, Marcio Rodrigues

2014-01-01

Sugarcane (Saccharum spp.) is grown on over 8 million ha in Brazil and is used to produce ethanol and sugar. Some sugarcane fields are burned to facilitate harvesting, which can affect the soil microbial community. However, whether sugarcane pre-harvest burning affects the community of arbuscular mycorrhizal fungi (AMF) and symbioses development is not known. In this study, we investigated the early impacts of harvest management on AMF spore communities and root colonization in three sugarcane varieties, under two harvest management systems (no-burning and pre-harvest burning). Soil and root samples were collected in the field after the first harvest of sugarcane varieties SP813250, SP801842, and RB72454, and AMF species were identified based on spore morphology. Diversity indices were determined based on spore populations and root colonization determined as an indicator of symbioses development. Based on the diversity indices, spore number and species occurrence in soil, no significant differences were observed among the AMF communities, regardless of harvest management type, sugarcane variety or interactions between harvest management type and sugarcane variety. However, mycorrhiza development was stimulated in sugarcane under the no-burning management system. Our data suggest that the sugarcane harvest management system may cause early changes in arbuscular mycorrhiza development.

Early changes in arbuscular mycorrhiza development in sugarcane under two harvest management systems

PubMed Central

de Azevedo, Lucas Carvalho Basilio; Stürmer, Sidney Luiz; Lambais, Marcio Rodrigues

2014-01-01

Sugarcane (Saccharum spp.) is grown on over 8 million ha in Brazil and is used to produce ethanol and sugar. Some sugarcane fields are burned to facilitate harvesting, which can affect the soil microbial community. However, whether sugarcane pre-harvest burning affects the community of arbuscular mycorrhizal fungi (AMF) and symbioses development is not known. In this study, we investigated the early impacts of harvest management on AMF spore communities and root colonization in three sugarcane varieties, under two harvest management systems (no-burning and pre-harvest burning). Soil and root samples were collected in the field after the first harvest of sugarcane varieties SP813250, SP801842, and RB72454, and AMF species were identified based on spore morphology. Diversity indices were determined based on spore populations and root colonization determined as an indicator of symbioses development. Based on the diversity indices, spore number and species occurrence in soil, no significant differences were observed among the AMF communities, regardless of harvest management type, sugarcane variety or interactions between harvest management type and sugarcane variety. However, mycorrhiza development was stimulated in sugarcane under the no-burning management system. Our data suggest that the sugarcane harvest management system may cause early changes in arbuscular mycorrhiza development. PMID:25477936

Vertical distribution of soil extractable organic C and N contents and total C and N stocks in 78-year-old tree plantations in subtropical Australia.

PubMed

Zhou, Xiaoqi; Dong, Haibo; Lan, Zhongming; Bacon, Gary; Hao, Yanbin; Chen, Chengrong

2017-10-01

Few studies have focused on the effects of long-term forest plantations on the soil profile of carbon (C) and nitrogen (N) stocks. In this study, we selected 78-year-old tree plantations that included three coniferous tree species (i.e., slash pine, hoop pine and kauri pine) and a Eucalyptus species in subtropical Australia. We measured soil extractable organic C (EOC) and N (EON) contents and total C and N stocks under different tree species on the forest floor and along a soil profile to 100 cm depth. The results showed that Eucalyptus had significantly higher soil EOC contents (3.3 Mg ha -1 ) than the other tree species (EOC of 1.9-2.3 Mg ha -1 ) and had significantly higher EON (156 kg ha -1 ) contents than slash pine (107 kg ha -1 ). Eucalyptus had significantly higher soil C (58.9 Mg ha -1 ) and N (2.03 Mg ha -1 ) stocks than the other tree species (22.3-27.6 Mg C ha -1 and 0.71-1.23 Mg N ha -1 ) at 0-100 cm depth. There were no differences in soil C stocks at the 0-100 cm depth among the coniferous tree species. Forest floor C stocks had stronger effects on mineral soil total N stocks than fine root biomass, whereas fine root biomass exerted stronger effects on soil total C stocks at the 0-100 cm depth than forest floor C and N stocks. Our results addressed large differences in soil C and N stocks under different tree species, which can provide useful information for local forest management practices in this region.

High-resolution forest mapping for behavioural studies in the Nature Reserve ‘Les Nouragues’, French Guiana

PubMed Central

Ringler, Max; Mangione, Rosanna; Pašukonis, Andrius; Rainer, Gerhard; Gyimesi, Kristin; Felling, Julia; Kronaus, Hannes; Réjou-Méchain, Maxime; Chave, Jérôme; Reiter, Karl; Ringler, Eva

2015-01-01

For animals with spatially complex behaviours at relatively small scales, the resolution of a global positioning system (GPS) receiver location is often below the resolution needed to correctly map animals’ spatial behaviour. Natural conditions such as canopy cover, canyons or clouds can further degrade GPS receiver reception. Here we present a detailed, high-resolution map of a 4.6 ha Neotropical river island and a 8.3 ha mainland plot with the location of every tree >5 cm DBH and all structures on the forest floor, which are relevant to our study species, the territorial frog Allobates femoralis (Dendrobatidae). The map was derived using distance- and compass-based survey techniques, rooted on dGPS reference points, and incorporates altitudinal information based on a LiDAR survey of the area. PMID:27053943

Contribution of fine tree roots to the silicon cycle in a temperate forest ecosystem developed on three soil types

NASA Astrophysics Data System (ADS)

Turpault, Marie-Pierre; Calvaruso, Christophe; Kirchen, Gil; Redon, Paul-Olivier; Cochet, Carine

2018-04-01

The role of forest vegetation in the silicon (Si) cycle has been widely examined. However, to date, little is known about the specific role of fine roots. The main objective of our study was to assess the influence of fine roots on the Si cycle in a temperate forest in north-eastern France. Silicon pools and fluxes in vegetal solid and solution phases were quantified within each ecosystem compartment, i.e. in the atmosphere, above-ground and below-ground tree tissues, forest floor and different soil layers, on three plots, each with different soil types, i.e. Dystric Cambisol (DC), Eutric Cambisol (EC) and Rendzic Leptosol (RL). In this study, we took advantage of a natural soil gradient, from shallow calcic soil to deep moderately acidic soil, with similar climates, atmospheric depositions, species compositions and management. Soil solutions were measured monthly for 4 years to study the seasonal dynamics of Si fluxes. A budget of dissolved Si (DSi) was also determined for the forest floor and soil layers. Our study highlighted the major role of fine roots in the Si cycle in forest ecosystems for all soil types. Due to the abundance of fine roots mainly in the superficial soil layers, their high Si concentration (equivalent to that of leaves and 2 orders higher than that of coarse roots) and their rapid turnover rate (approximately 1 year), the mean annual Si fluxes in fine roots in the three plots were 68 and 110 kg ha-1 yr-1 for the RL and the DC, respectively. The turnover rates of fine roots and leaves were approximately 71 and 28 % of the total Si taken up by trees each year, demonstrating the importance of biological recycling in the Si cycle in forests. Less than 1 % of the Si taken up by trees each year accumulated in the perennial tissues. This study also demonstrated the influence of soil type on the concentration of Si in the annual tissues and therefore on the Si fluxes in forests. The concentrations of Si in leaves and fine roots were approximately 1.5-2.0 times higher in the Si-rich DC compared to the Si-poor RL. In terms of the DSi budget, DSi production was large in the three plots in the forest floor (9.9 to 12.7 kg ha-1 yr-1), as well as in the superficial soil layer (5.3 to 14.5 kg ha-1 yr-1), and decreased with soil depth. An immobilization of DSi was even observed at 90 cm depth in plot DC (-1.7 kg ha-1 yr-1). The amount of Si leached from the soil profile was relatively low compared to the annual uptake by trees (13 % in plot DC to 29 % in plot RL). The monthly measurements demonstrated that the seasonal dynamics of the DSi budget were mainly linked to biological activity. Notably, the peak of dissolved Si production in the superficial soil layer occurred during winter and probably resulted from fine-root decomposition. Our study reveals that biological processes, particularly those involving fine roots, play a predominant role in the Si cycle in temperate forest ecosystems, while the geochemical processes appear to be limited.

Dynamics of N-NH4 +, N-NO3 -, and total soil nitrogen in paddy field with azolla and biochar

NASA Astrophysics Data System (ADS)

Dewi, W. S.; Wahyuningsih, G. I.; Syamsiyah, J.; Mujiyo

2018-03-01

Nitrogen (N) is one of macronutrients which is dynamic in the soil and becomes constraint factor for rice crops. The addition of nitrogen fertilizers and its absorption in paddy field causes the dynamics of nitrogen, thus declines of N absorption efficiency. The aim of this research is to know influence Azolla, biochar and different varieties application on N-NH4 +, N-NO3 -, and total soil N in paddy field. This research was conducted in a screen house located in Jumantono Laboratory, Faculty of Agriculture, Universitas Sebelas Maret (UNS) with altitude 170 m asl from April to June 2016. Treatment factors that were examined consisted of azolla (0 and 10 tons/ha), biochar (0 and 2 tons/ha), and rice varieties (Cisadane, Memberamo, Ciherang, IR64). The results of this research showed that there was no interaction between azolla, biochar and varieties. Nevertheless, azolla treatment with dose of 10 tons/ha increased soil NH4 + content (41 days after planting, DAP) by 13.4% but tend to decrease at 70 and 90 DAP. Biochar treatment with dose of 2 ton/ha increases NO3 - soil content (70 DAP) by 1.7% but decreases total N soil by 5.8% (41 DAP) and 4.7% (90 DAP). Different rice varieties generated different soil NH4 + content (41 DAP) and rice root volume. Cisadane variety can increase soil NH4 + content (41 DAP) by 52.08% and root volume by 51.80% (90 DAP) compared with Ciherang variety. Organic rice field management with azolla and biochar affects the availability of N in the soil and increase N absorption efficiency through its role in increasing rice root volume.

Physiological characters of soybean cultivars with application of nitrogen sources under dry land conditions

NASA Astrophysics Data System (ADS)

Hasanah, Y.; Nisa, T. C.; Hapsoh; Hanum, H.

2018-02-01

The objective of this study was to evaluate the influence of nutrient N management on physiological characteristics of three different soybean cultivars under dry land conditions. The study was conducted under dry lands of Desa Sambirejo (Langkat Regency) in the dry season. The study was conducted with a Randomize Block Design with two factors and three replication. The research was used a randomized block design with 2 factors and 3 replications. The first factor was soybean cultivars (Anjasmoro, Wilis, Sinabung). The second factor was N source, with Urea (50 kg/ha), Bradyrhizobium sp., farmyard manure (10 ton/ha), a combination of Bradyrhizobium sp. + farmyard manure (5 ton/ha) and a control with no N. The parameter observed in this study was the content of root N, shoot Nitrogen, shoot Phosphor, shoot Potassium and total of chlorophyll content. The results suggest that Anjasmoro and Sinabung cultivars had higher physiological characteristics (root N, shoot P and shoot K) compared to Wilis. Nitrogen source of Urea gave a higher physiological characteristics (content of root N, shoot Phosphor and shoot Potassium) compared to different treatment of N source in this study. The interaction between Anjasmoro cultivar and Urea gave the highest of content of shoot Phosphor and shoot Potassium, otherwise the interaction between Sinabung cultivar and Bradyrhizobium sp. gave the highest of content of shoot Nitrogen.

Liana abundance, diversity, and distribution on Barro Colorado Island, Panama.

PubMed

Schnitzer, Stefan A; Mangan, Scott A; Dalling, James W; Baldeck, Claire A; Hubbell, Stephen P; Ledo, Alicia; Muller-Landau, Helene; Tobin, Michael F; Aguilar, Salomon; Brassfield, David; Hernandez, Andres; Lao, Suzanne; Perez, Rolando; Valdes, Oldemar; Yorke, Suzanne Rutishauser

2012-01-01

Lianas are a key component of tropical forests; however, most surveys are too small to accurately quantify liana community composition, diversity, abundance, and spatial distribution - critical components for measuring the contribution of lianas to forest processes. In 2007, we tagged, mapped, measured the diameter, and identified all lianas ≥1 cm rooted in a 50-ha plot on Barro Colorado Island, Panama (BCI). We calculated liana density, basal area, and species richness for both independently rooted lianas and all rooted liana stems (genets plus clones). We compared spatial aggregation patterns of liana and tree species, and among liana species that varied in the amount of clonal reproduction. We also tested whether liana and tree densities have increased on BCI compared to surveys conducted 30-years earlier. This study represents the most comprehensive spatially contiguous sampling of lianas ever conducted and, over the 50 ha area, we found 67,447 rooted liana stems comprising 162 species. Rooted lianas composed nearly 25% of the woody stems (trees and lianas), 35% of woody species richness, and 3% of woody basal area. Lianas were spatially aggregated within the 50-ha plot and the liana species with the highest proportion of clonal stems more spatially aggregated than the least clonal species, possibly indicating clonal stem recruitment following canopy disturbance. Over the past 30 years, liana density increased by 75% for stems ≥1 cm diameter and nearly 140% for stems ≥5 cm diameter, while tree density on BCI decreased 11.5%; a finding consistent with other neotropical forests. Our data confirm that lianas contribute substantially to tropical forest stem density and diversity, they have highly clumped distributions that appear to be driven by clonal stem recruitment into treefall gaps, and they are increasing relative to trees, thus indicating that lianas will play a greater role in the future dynamics of BCI and other neotropical forests.

Nebraska's groundwater legacy: Nitrate contamination beneath irrigated cropland

PubMed Central

Exner, Mary E; Hirsh, Aaron J; Spalding, Roy F

2014-01-01

A 31 year record of ∼44,000 nitrate analyses in ∼11,500 irrigation wells was utilized to depict the decadal expansion of groundwater nitrate contamination (N ≥ 10 mg/L) in the irrigated corn-growing areas of eastern and central Nebraska and analyze long-term nitrate concentration trends in 17 management areas (MAs) subject to N fertilizer and budgeting requirements. The 1.3 M contaminated hectares were characterized by irrigation method, soil drainage, and vadose zone thickness and lithology. The areal extent and growth of contaminated groundwater in two predominately sprinkler-irrigated areas was only ∼20% smaller beneath well-drained silt loams with thick clayey-silt unsaturated layers and unsaturated thicknesses >15 m (400,000 ha and 15,000 ha/yr) than beneath well and excessively well-drained soils with very sandy vadose zones (511,000 ha and 18,600 ha/yr). Much slower expansion (3700 ha/yr) occurred in the 220,000 contaminated hectares in the central Platte valley characterized by predominately gravity irrigation on thick, well-drained silt loams above a thin (∼5.3 m), sandy unsaturated zone. The only reversals in long-term concentration trends occurred in two MAs (120,500 ha) within this contaminated area. Concentrations declined 0.14 and 0.20 mg N/L/yr (p < 0.02) to ∼18.3 and 18.8 mg N/L, respectively, during >20 years of management. Average annual concentrations in 10 MAs are increasing (p < 0.05) and indicate that average nitrate concentrations in leachates below the root zone and groundwater concentrations have not yet reached steady state. While management practices likely have slowed increases in groundwater nitrate concentrations, irrigation and nutrient applications must be more effectively controlled to retain nitrate in the root zone. PMID:25558112

High organic inputs explain shallow and deep SOC storage in a long-term agroforestry system - combining experimental and modeling approaches

NASA Astrophysics Data System (ADS)

Cardinael, Rémi; Guenet, Bertrand; Chevallier, Tiphaine; Dupraz, Christian; Cozzi, Thomas; Chenu, Claire

2018-01-01

Agroforestry is an increasingly popular farming system enabling agricultural diversification and providing several ecosystem services. In agroforestry systems, soil organic carbon (SOC) stocks are generally increased, but it is difficult to disentangle the different factors responsible for this storage. Organic carbon (OC) inputs to the soil may be larger, but SOC decomposition rates may be modified owing to microclimate, physical protection, or priming effect from roots, especially at depth. We used an 18-year-old silvoarable system associating hybrid walnut trees (Juglans regia × nigra) and durum wheat (Triticum turgidum L. subsp. durum) and an adjacent agricultural control plot to quantify all OC inputs to the soil - leaf litter, tree fine root senescence, crop residues, and tree row herbaceous vegetation - and measured SOC stocks down to 2 m of depth at varying distances from the trees. We then proposed a model that simulates SOC dynamics in agroforestry accounting for both the whole soil profile and the lateral spatial heterogeneity. The model was calibrated to the control plot only. Measured OC inputs to soil were increased by about 40 % (+ 1.11 t C ha-1 yr-1) down to 2 m of depth in the agroforestry plot compared to the control, resulting in an additional SOC stock of 6.3 t C ha-1 down to 1 m of depth. However, most of the SOC storage occurred in the first 30 cm of soil and in the tree rows. The model was strongly validated, properly describing the measured SOC stocks and distribution with depth in agroforestry tree rows and alleys. It showed that the increased inputs of fresh biomass to soil explained the observed additional SOC storage in the agroforestry plot. Moreover, only a priming effect variant of the model was able to capture the depth distribution of SOC stocks, suggesting the priming effect as a possible mechanism driving deep SOC dynamics. This result questions the potential of soils to store large amounts of carbon, especially at depth. Deep-rooted trees modify OC inputs to soil, a process that deserves further study given its potential effects on SOC dynamics.

Effects of subsoiling on lateral roots, sucrose metabolizing enzymes, and soil ergosterol in two Jeffrey pine stands

Treesearch

W.J. Otrosina; Shi-Jean S. Sung; L.M. White

1996-01-01

We determined the effects of subsoiling on woody lateral roots and enzyme activities involved in stem carbon metabolism of 90- to 100-year-old Jeffrey pine (Pinus jeffreyi Grev. And Balf.) growing on the eastern side of the California Sierra Nevada Range.Twelve 1.0-ha plots were established on each of two sites. Four site treatments thinning and subsoiling entire...

Effect of Woody Debris abundance on daytime refuge use by cotton mice.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hinkelman, Travis, M.; Loeb, Susan, C.

Abstract - Daytime refuges are important to nocturnal rodents for protection from predators and environmental extremes. Because refuges of forest-dwelling rodents are often associated with woody debris, we examined refuge use by 37 radio-collared Peromyscus gossypinus (cotton mice) in experimental plots with different levels of woody debris. Treatment plots had six times (≈ 60 m3/ha) the volume of woody debris as control plots (≈ 10 m3/ha). Of 247 refuges, 159 were in rotting stumps (64%), 32 were in root boles (13%), 19 were in brush piles (8%), and 16 were in logs (6%); 10 refuges could not be identified. Stumpsmore » were the most common refuge type in both treatments, but the distribution of refuge types was significantly different between treatment and control plots. Root boles and brush piles were used more on treatment plots than on control plots, and logs were used more on control plots than on treatment plots. Refuge type and vegetation cover were the best predictors of refuge use by cotton mice; root bole refuges and refuges with less vegetation cover received greater-than-expected use by mice. Abundant refuges, particularly root boles, may improve habitat quality for cotton mice in southeastern pine forests.« less

Comparative Cytotoxicity of Glycyrrhiza glabra Roots from Different Geographical Origins Against Immortal Human Keratinocyte (HaCaT), Lung Adenocarcinoma (A549) and Liver Carcinoma (HepG2) Cells.

PubMed

Basar, Norazah; Oridupa, Olayinka Ayotunde; Ritchie, Kenneth J; Nahar, Lutfun; Osman, Nashwa Mostafa M; Stafford, Angela; Kushiev, Habibjon; Kan, Asuman; Sarker, Satyajit D

2015-06-01

Glycyrrhiza glabra L. (Fabaceae), commonly known as 'liquorice', is a well-known medicinal plant. Roots of this plant have long been used as a sweetening and flavouring agent in food and pharmaceutical products, and also as a traditional remedy for cough, upper and lower respiratory ailments, kidney stones, hepatitis C, skin disorder, cardiovascular diseases, diabetes, gastrointestinal ulcers and stomach ache. Previous pharmacological and clinical studies have revealed its antitussive, antiinflammatory, antiviral, antimicrobial, antioxidant, immunomodulatory, hepatoprotective and cardioprotective properties. While glycyrrhizin, a sweet-tasting triterpene saponin, is the principal bioactive compound, several bioactive flavonoids and isoflavonoids are also present in the roots of this plant. In the present study, the cytotoxicity of the methanol extracts of nine samples of the roots of G. glabra, collected from various geographical origins, was assessed against immortal human keratinocyte (HaCaT), lung adenocarcinoma (A549) and liver carcinoma (HepG2) cell lines using the in vitro 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyl tetrazoliumbromide cell toxicity/viability assay. Considerable variations in levels of cytotoxicity were observed among various samples of G. glabra. Copyright © 2015 John Wiley & Sons, Ltd.

Effects of midas® on nematodes in commercial floriculture production in Florida.

PubMed

Kokalis-Burelle, Nancy; Rosskopf, Erin N; Albano, Joseph P; Holzinger, John

2010-03-01

Cut flower producers currently have limited options for nematode control. Four field trials were conducted in 2006 and 2007 to evaluate Midas® (iodomethane:chloropicrin 50:50) for control of root-knot nematodes (Meloidogyne arenaria) on Celosia argentea var. cristata in a commercial floriculture production field in southeastern Florida. Midas (224 kg/ha) was compared to methyl bromide:chloropicrin (98:2, 224 kg/ha), and an untreated control. Treatments were evaluated for effects on Meloidogyne arenaria J2 and free-living nematodes in soil through each season, and roots at the end of each season. Plant growth and root disease were also assessed. Population levels of nematodes isolated from soil were highly variable in all trials early in the season, and generally rebounded by harvest, sometimes to higher levels in fumigant treatments than in the untreated control. Although population levels of nematodes in soil were not significantly reduced during the growing season, nematodes in roots and galling at the end of the season were consistently reduced with both methyl bromide and Midas compared to the untreated control. Symptoms of phytotoxicity were observed in Midas treatments during the first year and were attributed to Fe toxicity. Fertilization was adjusted during the second year to investigate potential fumigant/fertilizer interactions. Interactions occurred at the end of the fourth trial between methyl bromide and fertilizers with respect to root-knot nematode J2 isolated from roots and galling. Fewer J2 were isolated from roots treated with a higher level of Fe (3.05%) in the form of Fe sucrate, and galling was reduced in methyl bromide treated plots treated with this fertilizer compared to Fe EDTA. Reduced galling was also seen with Midas in Fe sucrate fertilized plots compared to Fe EDTA. This research demonstrates the difficulty of reducing high root-knot nematode population levels in soil in subtropical conditions in production fields that have been repeatedly fumigated. Although soil population density may remain stable, root population density and disease can be reduced.

Soil properties and root biomass responses to prescribed burning in young Corsican pine (Pinus nigra Arn.) stands.

PubMed

Tufekcioglu, Aydin; Kucuk, Mehmet; Saglam, Bulent; Bilgili, Ertugrul; Altun, Lokman

2010-05-01

Fire is an important tool in the management of forest ecosystems. Although both prescribed and wildland fires are common in Turkey, few studies have addressed the influence of such disturbances on soil properties and root biomass dynamics. In this study, soil properties and root biomass responses to prescribed fire were investigated in 25-year-old corsican pine (Pinus nigra Arn.) stands in Kastamonu, Turkey. The stands were established by planting and were subjected to prescribed burning in July 2003. Soil respiration rates were determined every two months using soda-lime method over a two-year period. Fine (0-2 mm diameter) and small root (2-5 mm diameter) biomass were sampled approximately bimonthly using sequential coring method. Mean daily soil respiration ranged from 0.65 to 2.19 g Cm(-2) d(-1) among all sites. Soil respiration rates were significantly higher in burned sites than in controls. Soil respiration rates were correlated significantly with soil moisture and soil temperature. Fine root biomass was significantly lower in burned sites than in control sites. Mean fine root biomass values were 4940 kg ha(-1) for burned and 5450 kg ha(-1) for control sites. Soil pH was significantly higher in burned sites than in control sites in 15-35 cm soil depth. Soil organic matter content did not differ significantly between control and burned sites. Our results indicate that, depending on site conditions, fire could be used successfully as a tool in the management of forest stands in the study area.

Tightly-Coupled Plant-Soil Nitrogen Cycling: Comparison of Organic Farms across an Agricultural Landscape

PubMed Central

Bowles, Timothy M.; Hollander, Allan D.; Steenwerth, Kerri; Jackson, Louise E.

2015-01-01

How farming systems supply sufficient nitrogen (N) for high yields but with reduced N losses is a central challenge for reducing the tradeoffs often associated with N cycling in agriculture. Variability in soil organic matter and management of organic farms across an agricultural landscape may yield insights for improving N cycling and for evaluating novel indicators of N availability. We assessed yields, plant-soil N cycling, and root expression of N metabolism genes across a representative set of organic fields growing Roma-type tomatoes (Solanum lycopersicum L.) in an intensively-managed agricultural landscape in California, USA. The fields spanned a three-fold range of soil carbon (C) and N but had similar soil types, texture, and pH. Organic tomato yields ranged from 22.9 to 120.1 Mg ha-1 with a mean similar to the county average (86.1 Mg ha-1), which included mostly conventionally-grown tomatoes. Substantial variability in soil inorganic N concentrations, tomato N, and root gene expression indicated a range of possible tradeoffs between yields and potential for N losses across the fields. Fields showing evidence of tightly-coupled plant-soil N cycling, a desirable scenario in which high crop yields are supported by adequate N availability but low potential for N loss, had the highest total and labile soil C and N and received organic matter inputs with a range of N availability. In these fields, elevated expression of a key gene involved in root N assimilation, cytosolic glutamine synthetase GS1, confirmed that plant N assimilation was high even when inorganic N pools were low. Thus tightly-coupled N cycling occurred on several working organic farms. Novel combinations of N cycling indicators (i.e. inorganic N along with soil microbial activity and root gene expression for N assimilation) would support adaptive management for improved N cycling on organic as well as conventional farms, especially when plant-soil N cycling is rapid. PMID:26121264

Tightly-Coupled Plant-Soil Nitrogen Cycling: Comparison of Organic Farms across an Agricultural Landscape.

PubMed

Bowles, Timothy M; Hollander, Allan D; Steenwerth, Kerri; Jackson, Louise E

2015-01-01

How farming systems supply sufficient nitrogen (N) for high yields but with reduced N losses is a central challenge for reducing the tradeoffs often associated with N cycling in agriculture. Variability in soil organic matter and management of organic farms across an agricultural landscape may yield insights for improving N cycling and for evaluating novel indicators of N availability. We assessed yields, plant-soil N cycling, and root expression of N metabolism genes across a representative set of organic fields growing Roma-type tomatoes (Solanum lycopersicum L.) in an intensively-managed agricultural landscape in California, USA. The fields spanned a three-fold range of soil carbon (C) and N but had similar soil types, texture, and pH. Organic tomato yields ranged from 22.9 to 120.1 Mg ha-1 with a mean similar to the county average (86.1 Mg ha-1), which included mostly conventionally-grown tomatoes. Substantial variability in soil inorganic N concentrations, tomato N, and root gene expression indicated a range of possible tradeoffs between yields and potential for N losses across the fields. Fields showing evidence of tightly-coupled plant-soil N cycling, a desirable scenario in which high crop yields are supported by adequate N availability but low potential for N loss, had the highest total and labile soil C and N and received organic matter inputs with a range of N availability. In these fields, elevated expression of a key gene involved in root N assimilation, cytosolic glutamine synthetase GS1, confirmed that plant N assimilation was high even when inorganic N pools were low. Thus tightly-coupled N cycling occurred on several working organic farms. Novel combinations of N cycling indicators (i.e. inorganic N along with soil microbial activity and root gene expression for N assimilation) would support adaptive management for improved N cycling on organic as well as conventional farms, especially when plant-soil N cycling is rapid.

Efficacy of Fluensulfone in a Tomato–Cucumber Double Cropping System

PubMed Central

Morris, Kelly A.; Langston, David B.; Dickson, Donald W.; Davis, Richard F.; Timper, Patricia; Noe, James P.

2015-01-01

Vegetable crops in the southeastern United States are commonly grown on plastic mulch with two crop cycles produced on a single mulch application. Field trials were conducted in 2013 and 2014 in two locations to evaluate the efficacy of fluensulfone for controlling Meloidogyne spp. when applied through drip irrigation to cucumber in a tomato–cucumber double-cropping system. In the spring tomato crop, 1,3-dichloropropene (1,3-D), fluensulfone, and a resistant cultivar significantly decreased root galling by 91%, 73%, and 97%, respectively, compared to the untreated control. Tomato plots from the spring were divided into split plots for the fall where the main plots were the spring treatment and the subplots were cucumber either treated with fluensulfone (3.0 kg a.i./ha. via drip irrigation) or left untreated. The fall application of fluensulfone improved cucumber vigor and reduced gall ratings compared to untreated subplots. Fluensulfone reduced damage from root-knot nematodes when applied to the first crop as well as provided additional protection to the second crop when it was applied through a drip system. PMID:26941459

Cover-crops - improvement of soil fertility and provision of biomass

NASA Astrophysics Data System (ADS)

Kirchmeyr, Franz; Szerencsits, Manfred

2017-04-01

Besides climate change, erosion, inadequate crop rotation and intensive tillage may turn arable land into marginal land. On the other hand, reclamation approaches which include arable farming methods may result only in short-term success if they do not consider their effects on humus content and erosion. Additionally, effective reclamation will also have to address the growing need for food production besides biomass provision. Therefore, we investigated if cover or catch crops (CC) may accomplish both goals: Improve soil quality and humus content even if CC-biomass is used for biogas production. Humus content and soil fertility: In comparison to complete fallow in a crop rotation with silage maize and cereals the humus balance can be improved from -50 to +280 kg humus carbon (C) ha-1 year-1 through additional CC (4.5 t DM ha-1) used for biogas production and an equivalent amount of digestate returned to the field. With a CC-yield of 2.5 t DM ha-1 the humus balance results in 220 kg C ha-1 year-1. It is still slightly higher if the same CC remains on the field as green manure (170 kg C ha-1 year-1). Additionally it is important to consider that 20 - 50 % of the assimilated carbon can be found in the plant roots and that roots and root exudates as well as CC harvest residues provide fresh organic matter for soil life. Furthermore, biomass production of cover crops was considerably higher, if they were used for biogas production because of earlier cultivation and later harvest than mulching. Erosion control: The risk of erosion can be reduced by approx. 50 % in comparison to complete fallow if CC with 2.5 t DM ha-1 remain on the field as green manure. A comparable reduction can be achieved, if CC with 4.5 t DM ha-1 are harvested for biogas production. Because of better weed suppression, tilth and soil structure of CC with higher biomass, it is more likely to apply conservation tillage and avoid ploughing. Without ploughing a CC with 4.5 t DM ha-1 used for biogas the risk of erosion can even be reduced by approx. 75 % in comparison to complete fallow with ploughing. Water balance and quality: On the plots of our field experiments approx. 30 % of the precipitation contributed to groundwater recharge in crop rotations without CC. With 2.5 t CC DM ha-1 remaining on the field as green manure groundwater recharge was reduced to approx. 27 % whereas 4.5 t DM CC ha-1 caused a reduction to approx. 25 %. On the long term it can be expected that reduced erosion and increased humus content may improve the water storage capacity of soils and in this way reduce surface runoff and the risk of flooding. Additionally we found that CC remaining as green manure reduced the total nitrate leaching by 6 %. CC used for biogas reduced total leaching in comparison to complete fallow by 26 %.

Carbon Budgets for Four Forests in Northern California

NASA Astrophysics Data System (ADS)

Mattson, K. G.; Zhang, J.; Cohn, E. P.

2016-12-01

Carbon pools and fluxes are being measured in the first two years in four forest types in Northern California as part of a long-term experiment where canopies will be experimentally thinned to test the effects of forest canopy on carbon cycling. All major pools of carbon have been quantified along with most fluxes between pools. The pools are not techincally difficult to measure or estimate, the fluxes can be more difficult. But using our field measures are in a bookkeeping model of carbon pools and annual fluxes we can develop reasonably accurate carbon cycles in these four forests. We use direct measures as much as possible (litterfall, soil CO2 efflux, wood decay, harvests, etc), then make reasonable assumptions for more difficult measures (e.g., annual gross primary production, tree mortality, root decomposition, soil carbon turnover), and finally make some estimates by difference (root mortality or soil carbon turnover). We are able to construct models that balance carbon pools similar to our measures. The four forest types range considerably in their carbon budgets and cycles. Above ground live biomass carbon pool ranges from 104Mg C ha-1 for the 50 year old Ponderosa Pine conversion stands to more than double that 265 for the True Fir stand found at higher elevation (greater than 6,000 feet). The Mixed Conifer (the most representative forest type) and the Oak Stand (up to 60 % basal area California black oak) are both mid way between at 140 and 155, respectively. The detrital carbon pools generally follow the above ground biomass trends and contain greater pool sizes (down to 100 cm soil depths). Approximately 2/3rds of the detrital carbon is stored in the mineral soil but significant amounts are also stored in the forest floors and woody debris. Live small roots are relatively small pools of about 5 Mg C ha-1 but active and nearly turnover each year. Live roots produce about half the soil CO2 efflux. Dead roots are generally twice the size of live roots and turnover at half the rate. Woody debris appears to be an important contributor to below ground carbon. We have derived a humification coefficient where 2/3 of the decomposed carbon leaves the system as CO2 but more importantly up 1/3 remains behind to enter the next pool.

A Parameterized Inversion Model for Soil Moisture and Biomass from Polarimetric Backscattering Coefficients

NASA Technical Reports Server (NTRS)

Truong-Loi, My-Linh; Saatchi, Sassan; Jaruwatanadilok, Sermsak

2012-01-01

A semi-empirical algorithm for the retrieval of soil moisture, root mean square (RMS) height and biomass from polarimetric SAR data is explained and analyzed in this paper. The algorithm is a simplification of the distorted Born model. It takes into account the physical scattering phenomenon and has three major components: volume, double-bounce and surface. This simplified model uses the three backscattering coefficients ( sigma HH, sigma HV and sigma vv) at low-frequency (P-band). The inversion process uses the Levenberg-Marquardt non-linear least-squares method to estimate the structural parameters. The estimation process is entirely explained in this paper, from initialization of the unknowns to retrievals. A sensitivity analysis is also done where the initial values in the inversion process are varying randomly. The results show that the inversion process is not really sensitive to initial values and a major part of the retrievals has a root-mean-square error lower than 5% for soil moisture, 24 Mg/ha for biomass and 0.49 cm for roughness, considering a soil moisture of 40%, roughness equal to 3cm and biomass varying from 0 to 500 Mg/ha with a mean of 161 Mg/ha

Confirmation and mechanism of glyphosate resistance in tall windmill grass (Chloris elata) from Brazil.

PubMed

Brunharo, Caio Acg; Patterson, Eric L; Carrijo, Daniela R; de Melo, Marcel Sc; Nicolai, Marcelo; Gaines, Todd A; Nissen, Scott J; Christoffoleti, Pedro J

2016-09-01

Overreliance on glyphosate as a single tool for weed management in agricultural systems in Brazil has selected glyphosate-resistant populations of tall windmill grass (Chloris elata Desv.). Two C. elata populations, one glyphosate resistant (GR) and one glyphosate susceptible (GS), were studied in detail for a dose-response experiment and for resistance mechanism. The dose causing 50% reduction in dry weight was 620 g a.e. ha(-1) for GR and 114 g ha(-1) for GS, resulting in an R/S ratio of 5.4. GS had significantly higher maximum (14) C-glyphosate absorption into the treated leaf (51.3%) than GR (39.5%), a difference of 11.8% in maximum absorption. GR also retained more (14) C-glyphosate in the treated leaf (74%) than GS (51%), and GR translocated less glyphosate (27%) to other plant parts (stems, roots and root exudation) than GS (36%). There were no mutations at the Pro106 codon in the gene encoding 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS). There was no difference in EPSPS genomic copy number or EPSPS transcription between GS and GR populations. Based on these data, reduced glyphosate absorption and increased glyphosate retention in the treated leaf contribute to glyphosate resistance in this C. elata population from Brazil. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.

The Prenylated Rab GTPase Receptor PRA1.F4 Contributes to Protein Exit from the Golgi Apparatus.

PubMed

Lee, Myoung Hui; Yoo, Yun-Joo; Kim, Dae Heon; Hanh, Nguyen Hong; Kwon, Yun; Hwang, Inhwan

2017-07-01

Prenylated Rab acceptor1 (PRA1) functions in the recruitment of prenylated Rab proteins to their cognate organelles. Arabidopsis ( Arabidopsis thaliana ) contains a large number of proteins belonging to the AtPRA1 family. However, their physiological roles remain largely unknown. Here, we investigated the physiological role of AtPRA1.F4, a member of the AtPRA1 family. A T-DNA insertion knockdown mutant of AtPRA1.F4 , atpra1.f4 , was smaller in stature than parent plants and possessed shorter roots, whereas transgenic plants overexpressing HA:AtPRA1.F4 showed enhanced development of secondary roots and root hairs. However, both overexpression and knockdown plants exhibited increased sensitivity to high-salt stress, lower vacuolar Na + /K + -ATPase and plasma membrane ATPase activities, lower and higher pH in the vacuole and apoplast, respectively, and highly vesiculated Golgi apparatus. HA:AtPRA1.F4 localized to the Golgi apparatus and assembled into high-molecular-weight complexes. atpra1.f4 plants displayed a defect in vacuolar trafficking, which was complemented by low but not high levels of HA : AtPRA1.F4 Overexpression of HA:AtPRA1.F4 also inhibited protein trafficking at the Golgi apparatus, albeit differentially depending on the final destination or type of protein: trafficking of vacuolar proteins, plasma membrane proteins, and trans-Golgi network (TGN)-localized SYP61 was strongly inhibited; trafficking of TGN-localized SYP51 was slightly inhibited; and trafficking of secretory proteins and TGN-localized SYP41 was negligibly or not significantly inhibited. Based on these results, we propose that Golgi-localized AtPRA1.F4 is involved in the exit of many but not all types of post-Golgi proteins from the Golgi apparatus. Additionally, an appropriate level of AtPRA1.F4 is crucial for its function at the Golgi apparatus. © 2017 American Society of Plant Biologists. All Rights Reserved.

Astragali radix: could it be an adjuvant for oxaliplatin-induced neuropathy?

PubMed Central

Di Cesare Mannelli, Lorenzo; Pacini, Alessandra; Micheli, Laura; Femia, Angelo Pietro; Maresca, Mario; Zanardelli, Matteo; Vannacci, Alfredo; Gallo, Eugenia; Bilia, Anna Rita; Caderni, Giovanna; Firenzuoli, Fabio; Mugelli, Alessandro; Ghelardini, Carla

2017-01-01

Neurotoxicity is a major side effect of platinum derivatives both during and after treatment. In the absence of effective pharmacological compounds, the opportunity to identify safe adjuvant treatments among medicinal plants seems appropriate. Astragali radix is an adaptogenic herbal product recently analyzed in platinum-treated cancer patients. With the aim of evaluating the anti-neuropathic profile of Astragali radix, a previously characterized aqueous (Aqu) and two hydroalcoholic (20%HA and 50%HA) extracts were tested in a rat model of oxaliplatin-induced neuropathy. Repeated administrations significantly reduced oxaliplatin-dependent hypersensitivity with 50%HA, the most effective, fully preventing mechanical and thermal hypersensitivity. Ex vivo, 50%HA reduced morphometric and molecular alterations induced by oxaliplatin in peripheral nerve and dorsal-root-ganglia. In the spinal cord and in brain areas, 50%HA significantly decreased activation of microglia and astrocytes. Furthermore, 50%HA prevented the nephro- and hepato-toxicity induced by the anticancer drug. The protective effect of 50%HA did not alter oxaliplatin-induced apoptosis in colon tumors of Pirc rats, an Apc-driven model of colon carcinogenesis. The hydroalcoholic extract (50%HA) of Astragali radix relieves pain and promotes the rescue mechanisms that protect nervous tissue from the damages triggering chronic pain. A safe profile strongly suggests the usefulness of this natural product in oxaliplatin-induced neuropathy. PMID:28186109

Influence of tree provenance on biogenic VOC emissions of Scots pine (Pinus sylvestris) stumps

NASA Astrophysics Data System (ADS)

Kivimäenpää, Minna; Magsarjav, Narantsetseg; Ghimire, Rajendra; Markkanen, Juha-Matti; Heijari, Juha; Vuorinen, Martti; Holopainen, Jarmo K.

2012-12-01

Resin-storing plant species such as conifer trees can release substantial amounts of volatile organic compounds (VOCs) into the atmosphere under stress circumstances that cause resin flow. Wounding can be induced by animals, pathogens, wind or direct mechanical damage e.g. during harvesting. In atmospheric modelling of biogenic VOCs, actively growing vegetation has been mostly considered as the source of emissions. Root systems and stumps of resin-storing conifer trees could constitute a significant store of resin after tree cutting. Therefore, we assessed the VOC emission rates from the cut surface of Scots pine stumps and estimated the average emission rates for an area with a density of 2000 stumps per ha. The experiment was conducted with trees of one Estonian and three Finnish Scots pine provenances covering a 1200 km gradient at a common garden established in central Finland in 1991. VOC emissions were dominated by monoterpenes and less than 0.1% of the total emission was sesquiterpenes. α-Pinene (7-92% of the total emissions) and 3-carene (0-76% of the total emissions) were the dominant monoterpenes. Proportions of α-pinene and camphene were significantly lower and proportions of 3-carene, sabinene, γ-terpinene and terpinolene higher in the southernmost Saaremaa provenance compared to the other provenances. Total terpene emission rates (standardised to +20 °C) from stumps varied from 27 to 1582 mg h-1 m-2 when measured within 2-3 h after tree cutting. Emission rates decreased rapidly to between 2 and 79 mg h-1 m-2 at 50 days after cutting. The estimated daily terpene emission rates on a hectare basis from freshly cut stumps at a cut tree density of 2000 per ha varied depending on provenance. Estimated emission ranges were 100-710 g ha-1 d-1 and 137-970 g ha-1 d-1 in 40 and in 60 year-old forest stands, respectively. Our result suggests that emission directly from stump surfaces could be a significant source of monoterpene emissions for a few weeks after logging in a Scots pine stand, but provenance properties strongly affect resin flow from root to stump surface.

Modification of plasma membrane proton pumps in cucumber roots as an adaptation mechanism to salt stress.

PubMed

Janicka-Russak, Małgorzata; Kabała, Katarzyna; Wdowikowska, Anna; Kłobus, Grażyna

2013-07-01

The effect of salt stress (50mM NaCl) on modification of plasma membrane (PM) H(+)-ATPase (EC 3.6.3.14) activity in cucumber roots was studied. Plants were grown under salt stress for 1, 3 or 6 days. In salt-stressed plants, weak stimulation of ATP hydrolytic activity of PM H(+)-ATPase and significant stimulation of proton transport through the plasma membrane were observed. The H(+)/ATP coupling ratio in the plasma membrane of plants subjected to salt stress significantly increased. The greatest stimulation of PM H(+)-ATPase was in 6-day stressed plants. Increased H2O2 accumulation under salt stress conditions in cucumber roots was also observed, with the greatest accumulation observed in 6-day stressed plants. Additionally, during the sixth day of salinity, there appeared heat shock proteins (HSPs) 17.7 and 101, suggesting that repair processes and adaptation to stress occurred in plants. Under salt stress conditions, fast post-translational modifications took place. Protein blot analysis with antibody against phosphothreonine and 14-3-3 proteins showed that, under salinity, the level of those elements increased. Additionally, under salt stress, activity changes of PM H(+)-ATPase can partly result from changes in the pattern of expression of PM H(+)-ATPase genes. In cucumber seedlings, there was increased expression of CsHA10 under salt stress and the transcript of a new PM H(+)-ATPase gene isoform, CsHA1, also appeared. Accumulation of the CsHA1 transcript was induced by NaCl exposure, and was not expressed at detectable levels in roots of control plants. The appearance of a new PM H(+)-ATPase transcript, in addition to the increase in enzyme activity, indicates the important role of the enzyme in maintaining ion homeostasis in plants under salt stress. Copyright © 2013 Elsevier GmbH. All rights reserved.

Transfer and Development of Pasteuria penetrans

PubMed Central

Kariuki, G. M.; Dickson, D. W.

2007-01-01

Pasteuria penetrans isolate P-20 has been attributed as the cause of soil suppressiveness to peanut root-knot nematode in Florida. In this study, P. penetrans was transferred from a suppressive site to a new site and established by growing susceptible hosts to the peanut root-knot nematode during both summer and winter seasons. When two soil fumigants, 1,3-dichloropropene (1,3-D) and chloropicrin, were applied broadcast at the rate of 168 liters/ha and 263 kg/ha, respectively, the bacterium was not adversely affected by 1,3-D but was adversely affected by chloropicrin. In autumn 2005, after the harvest of the second peanut crop, the greatest number of J2 was recorded in the chloropicrin-treated plots, followed by the non-fumigated plots and 1,3-D-fumigated plots. The percentage J2 encumbered with endospores, endospores per J2 and percentage of P. penetrans-infected females were greatest in the non-fumigated plots, followed by 1,3-D- and chloropicrin-fumigated plots. This study demonstrates that P. penetrans can be transferred from a suppressive site to a new site and increased to suppressive densities against the peanut root-knot nematode. PMID:19259476

Transfer and Development of Pasteuria penetrans.

PubMed

Kariuki, G M; Dickson, D W

2007-03-01

Pasteuria penetrans isolate P-20 has been attributed as the cause of soil suppressiveness to peanut root-knot nematode in Florida. In this study, P. penetrans was transferred from a suppressive site to a new site and established by growing susceptible hosts to the peanut root-knot nematode during both summer and winter seasons. When two soil fumigants, 1,3-dichloropropene (1,3-D) and chloropicrin, were applied broadcast at the rate of 168 liters/ha and 263 kg/ha, respectively, the bacterium was not adversely affected by 1,3-D but was adversely affected by chloropicrin. In autumn 2005, after the harvest of the second peanut crop, the greatest number of J2 was recorded in the chloropicrin-treated plots, followed by the non-fumigated plots and 1,3-D-fumigated plots. The percentage J2 encumbered with endospores, endospores per J2 and percentage of P. penetrans-infected females were greatest in the non-fumigated plots, followed by 1,3-D- and chloropicrin-fumigated plots. This study demonstrates that P. penetrans can be transferred from a suppressive site to a new site and increased to suppressive densities against the peanut root-knot nematode.

Mechanism of tolerance of blueberry (Vaccinium sp) to hexazinone

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baron, J.J.

1985-01-01

Hexazinone (3-cyclohexyl-6-(dimethylamino)-1-methyl-1,3,5-trazine-2,4(1H,3H)-dione) was applied as a soil drench to 1-year-old rooted hardwood cuttings of highbush (Vaccinium corymbosum L.) and rabbiteye (V. ashei Reade) blueberry plants. No differences in susceptibility to hexazinone were detected among 10 highbush and 3 rabbiteye cultivars grown in a fine sandy soil. The tolerance of two highbush and two rabbiteye cultivars to hexazinone were studied in low, medium, and high organic matter soils. Hexazinone at 1 or 2 kg/ha had no inhibitory effect on blueberry growth in the high organic matter soil, inhibited growth slightly on the medium organic matter soil, and caused severe injury inmore » the low organic matter soil. Hexazinone toxicity, absorption, translocation, metabolism, and effect on photosynthesis were investigated with highbush and rabbiteye blueberry and goldenrod (Solidago fistulosa Miller), which were growing in hydroponic culture. Highbush and rabbiteye blueberry plants were three times more tolerant to root applications of hexazinone than was goldenrod. Blueberry plants absorbed an average of 7.9% of the root applied /sup 14/C-hexazinone and the goldenrod absorbed an average of 10.1%. An average of 6.8% of the root absorbed hexazinone (/sup 14/C-label) was translocated from the root system of the blueberry plants to stem and leaves. Radioactivity in the goldenrod plants was equally distributed between the roots and shoots. The majority of the radioactivity in blueberry and goldenrod plants was recovered in the form of hexazinone. Root absorbed hexazinone caused a rapid inhibition of photosynthesis in intact goldenrod leaves at rates of 10 ..mu..M. Root absorbed hexazinone inhibited photosynthesis in intact blueberry leaves at hexazinone concentrations of 100 ..mu..M.« less

Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system?

PubMed

Higo, Masao; Sato, Ryohei; Serizawa, Ayu; Takahashi, Yuichi; Gunji, Kento; Tatewaki, Yuya; Isobe, Katsunori

2018-01-01

Understanding diversity of arbuscular mycorrhizal fungi (AMF) is important for optimizing their role for phosphorus (P) nutrition of soybeans ( Glycine max (L.) Merr.) in P-limited soils. However, it is not clear how soybean growth and P nutrition is related to AMF colonization and diversity of AMF communities in a continuous P-unfertilized cover cropping system. Thus, we investigated the impact of P-application and cover cropping on the interaction among AMF colonization, AMF diversity in soybean roots, soybean growth and P nutrition under a five-year P-unfertilized crop rotation. In this study, we established three cover crop systems (wheat, red clover and oilseed rape) or bare fallow in rotation with soybean. The P-application rates before the seeding of soybeans were 52.5 and 157.5 kg ha -1 in 2014 and 2015, respectively. We measured AMF colonization in soybean roots, soybean growth parameters such as aboveground plant biomass, P uptake at the flowering stage and grain yields at the maturity stage in both years. AMF community structure in soybean roots was characterized by specific amplification of small subunit rDNA. The increase in the root colonization at the flowering stage was small as a result of P-application. Cover cropping did not affect the aboveground biomass and P uptake of soybean in both years, but the P-application had positive effects on the soybean performance such as plant P uptake, biomass and grain yield in 2015. AMF communities colonizing soybean roots were also significantly influenced by P-application throughout the two years. Moreover, the diversity of AMF communities in roots was significantly influenced by P-application and cover cropping in both years, and was positively correlated with the soybean biomass, P uptake and grain yield throughout the two years. Our results indicated that P-application rather than cover cropping may be a key factor for improving soybean growth performance with respect to AMF diversity in P-limited cover cropping systems. Additionally, AMF diversity in roots can potentially contribute to soybean P nutrition even in the P-fertilized cover crop rotational system. Therefore, further investigation into the interaction of AMF diversity, P-application and cover cropping is required for the development of more effective P management practices on soybean growth performance.

Lithospermic acid derivatives from Lithospermum erythrorhizon increased expression of serine palmitoyltransferase in human HaCaT cells.

PubMed

Thuong, Phuong Thien; Kang, Keon Wook; Kim, Jeong Kee; Seo, Dae Bang; Lee, Sang Jun; Kim, Sung Han; Oh, Won Keun

2009-03-15

A MeOH extract of the dry root of Lithospermum erythrorhizon showed strong increasing effect on serine palmitoyltransferase (SPT) in normal human keratinocyte cells (HaCaT cells). Bioassay-guided separation on this extract using repeated chromatography resulted in the isolation of lithospermic acid (1) and two derivative esters, 9''-methyl lithospermate (2) and 9'-methyl lithospermate (3). Compounds 1-3 significantly increased SPT expressions in the relative quantity (%) of SPT1 mRNA as well as SPT2 mRNA. These constituents also raised the level of SPT protein in HaCaT cells in a dose-dependent manner, with the increased level of SPT protein in HaCaT cells of 55%, 23%, and 81% at the concentration of 100 microg/ml, respectively. This finding suggests that lithospermic acid and its derivatives from L. erythrorhizon might improve the permeability barrier by stimulating the protein level of SPT.

A comparison of two methods of heart rate variability assessment at high altitude.

PubMed

Boos, Christopher John; Bakker-Dyos, Josh; Watchorn, Jim; Woods, David Richard; O'Hara, John Paul; Macconnachie, Lee; Mellor, Adrian

2017-11-01

Heart rate variability (HRV) is a useful index of autonomic function and has been linked to the development of high altitude (HA) related illness. However, its assessment at HA has been undermined by the relative expense and limited portability of traditional HRV devices which have mandated at least a minute heart rate recording. In this study, the portable ithlete ™ HRV system, which uses a 55 s recording, was compared with a reference method of HRV which utilizes a 5 min electrocardiograph recording (CheckMyHeart ™ ). The root mean squares of successive R-R intervals (RMSSD) for each device was converted to a validated HRV score (lnRMSSD × 20) for comparison. Twelve healthy volunteers were assessed for HRV using the two devices across seven time points at HA over 10 days. There was no significant change in the HRV values with either the ithlete (P = 0·3) or the CheckMyHeart ™ (P = 0·19) device over the seven altitudes. There was also a strong overall correlation between the ithlete ™ and CheckMyHeart ™ device (r = 0·86; 95% confidence interval: 0·79-0·91). The HRV was consistently, though non-significantly higher with ithlete ™ than with the CheckMyHeart ™ device [mean difference (bias) 1·8 l; 95% CI -12·3 to 8·5]. In summary, the ithlete ™ and CheckMyHeart ™ system provide relatively similar results with good overall agreement at HA. © 2016 Crown Copyright. Clinical Physiology and Functional Imaging © 2016 Scandinavian Society of Clinical Physiology and Nuclear Medicine This article is published with the permission of the Controller of HMSO and the Queen's Printer for Scotland.

Can short-term pasture management increase C balance in the Atlantic Rainforest?

PubMed

da Rocha Junior, Paulo Roberto; Andrade, Felipe Vaz; Santos Satiro, Lucas; Donagemma, Guilherme Kangussú; de Sá Mendonça, Eduardo

2018-05-11

Few studies have shown the importance of different pasture management practices on C storage and the reduction of CO 2 -C emissions in tropical conditions. The objective of the present study was to determine short-term changes in C pools and C balance from different pasture management practices established in the Atlantic Rainforest. A field study was carried out in Alegre, ES, Brazil from September 2013 to August 2014 to investigate the first-year effect of pasture management practices on a Udult clayey soil. The different pasture management practices studied included the following: control (CON), chiseled (CHI), fertilized (FER), burned (BUR), integrated with crop-livestock (iCL) systems, and plowed and harrowed (PH). Monthly disturbed and undisturbed soil samples were taken at two different layers (0.00-0.05 and 0.05-0.20 m) for chemical, physical, and organic matter characterization. C inputs monitored in aboveground pools included plant aerial parts and litter, and belowground pools included roots and soil C stocks. C outputs monitored were CO 2 -C emissions, erosion water, and sediment. C balance was considered the difference between inputs and outputs in each treatment during four seasons. The spring and summer seasons had a strong influence on C inputs and outputs where there is significant difference between spring and summer, while the autumn and winter seasons had less influence. All pasture management practices exhibited positive C balance after 1 year. High values of C balance were verified in pastures fertilized (FER) (53.04 Mg ha -1  year -1 . Intermediate C balance was found in the burned (BUR) (40.84 Mg ha -1  year -1 ), traditional control (CON) (40.31 Mg ha -1  year -1 ), and in the plowing and harrowing (PH) (40.02 Mg ha -1  year -1 ) management practices. The practices of chiseled (40.00 Mg ha -1  year -1 ) and integrated crop-livestock systems (iCL) (59.06 Mg ha -1  year -1 ) resulted in low C balance.

Corn rootworms (Coleoptera: Chrysomelidae) in space and time

NASA Astrophysics Data System (ADS)

Park, Yong-Lak

Spatial dispersion is a main characteristic of insect populations. Dispersion pattern provides useful information for developing effective sampling and scouting programs because it affects sampling accuracy, efficiency, and precision. Insect dispersion, however, is dynamic in space and time and largely dependent upon interactions among insect, plant and environmental factors. This study investigated the spatial and temporal dynamics of corn rootworm dispersion at different spatial scales by using the global positioning system, the geographic information system, and geostatistics. Egg dispersion pattern was random or uniform in 8-ha cornfields, but could be aggregated at a smaller scale. Larval dispersion pattern was aggregated regardless of spatial scales used in this study. Soil moisture positively affected corn rootworm egg and larval dispersions. Adult dispersion tended to be aggregated during peak population period and random or uniform early and late in the season and corn plant phenology was a major factor to determine dispersion patterns. The dispersion pattern of root injury by corn rootworm larval feeding was aggregated and the degree of aggregation increased as the root injury increased within the range of root injury observed in microscale study. Between-year relationships in dispersion among eggs, larvae, adult, and environment provided a strategy that could predict potential root damage the subsequent year. The best prediction map for the subsequent year's potential root damage was the dispersion maps of adults during population peaked in the cornfield. The prediction map was used to develop site-specific pest management that can reduce chemical input and increase control efficiency by controlling pests only where management is needed. This study demonstrated the spatio-temporal dynamics of insect population and spatial interactions among insects, plants, and environment.

Medicago truncatula Mtha1-2 mutants loose metabolic responses to mycorrhizal colonization.

PubMed

Hubberten, Hans-Michael; Sieh, Daniela; Zöller, Daniela; Hoefgen, Rainer; Krajinski, Franziska

2015-01-01

Bidirectional nutrient transfer is one of the key features of the arbuscular mycorrhizal symbiosis. Recently we were able to identify a Medicago truncatula mutant (mtha1-2) that is defective in the uptake of phosphate from the periarbuscular space due to a lack of the energy providing proton gradient provided by the symbiosis specific proton ATPase MtHA1 In order to further characterize the impact of fungal colonization on the plant metabolic status, without the beneficial aspect of improved mineral nutrition, we performed leaf ion analyses in mutant and wildtype plants with and without fungal colonization. Although frequency of fungal colonization was unaltered, the mutant did not show a positive growth response to mycorrhizal colonization. This indicates that nutrient transfer into the plant cell fails in the truncated arbuscules due to lacking expression of a functional MtHA1 protein. The leaves of wildtype plants showed clear metabolic responses to root mycorrhizal colonization, whereas no changes of leaf metabolite levels of mycorrhizal mtha1-2 plants were detected, even though they were colonized. These results show that MtHa1 is indispensable for a functional mycorrhizal symbiosis and, moreover, suggest that fungal root colonization per se does not depend on nutrient transfer to the plant host.

Anthropogenic acidification effects in primeval forests in the Transcarpathian Mts., western Ukraine.

PubMed

Oulehle, F; Hleb, R; Houska, J; Samonil, P; Hofmeister, J; Hruska, J

2010-01-15

The precipitation chemistry, deposition, nutrient pools and composition of soils and soil water, as well as an estimate of historical deposition of sulphur (S) and inorganic nitrogen (N) for the period 1860-2008, were determined in primeval deciduous and coniferous forests at the sites Javornik and Pop Ivan, respectively. Measured S throughfall inputs of 10 kg ha(-1)year(-1) in 2008 were similar to those estimated for the period 1900-1950 at both sites. The highest estimated S inputs were in the 1980s. Measured bulk deposition of N in 2008 was lower at Pop Ivan (5.6 kg ha(-1)year(-1)) compared to Javornik (12 kg ha(-1)year(-1)). Significantly lower NO(3) deposition was both estimated and measured at Pop Ivan. Higher soil base cation concentrations were observed at well-buffered Javornik underlain by flysch (Ca pool of 2046 kg ha(-1) and base saturation of 29%) compared to Pop Ivan underlain by crystalline schist (Ca pool of 186 kg ha(-1) and base saturation of 6.5%). The soil pool of organic carbon (C) was higher at Pop Ivan (212 t ha(-1)) compared to Javornik (127 t ha(-1)). The C concentration was positively correlated with organic N in the soil (p<0.001) at both sites, but the mass average C/N ratio in the forest floor was lower at Javornik (22) than at Pop Ivan (26). High N leaching of 17 kg ha(-1)year(-1) at the 90 cm depth was measured in the soil water at Javornik, suggesting high mineralization and nitrification rates in old growth deciduous forests in the area. Despite relatively low Al concentrations in the soil water, a low soil water Bc/Al ratio (0.9) (Bc=Ca+Mg+K) was found in the upper mineral soil at Pop Ivan. This suggests that the spruce forest ecosystems in the area are vulnerable to anthropogenic acidification and to the adverse effects of Al on forest root systems. Copyright 2009 Elsevier B.V. All rights reserved.

Cacao Cultivation under Diverse Shade Tree Cover Allows High Carbon Storage and Sequestration without Yield Losses

PubMed Central

Abou Rajab, Yasmin; Leuschner, Christoph; Barus, Henry; Tjoa, Aiyen; Hertel, Dietrich

2016-01-01

One of the main drivers of tropical forest loss is their conversion to oil palm, soy or cacao plantations with low biodiversity and greatly reduced carbon storage. Southeast Asian cacao plantations are often established under shade tree cover, but are later converted to non-shaded monocultures to avoid resource competition. We compared three co-occurring cacao cultivation systems (3 replicate stands each) with different shade intensity (non-shaded monoculture, cacao with the legume Gliricidia sepium shade trees, and cacao with several shade tree species) in Sulawesi (Indonesia) with respect to above- and belowground biomass and productivity, and cacao bean yield. Total biomass C stocks (above- and belowground) increased fivefold from the monoculture to the multi-shade tree system (from 11 to 57 Mg ha-1), total net primary production rose twofold (from 9 to 18 Mg C ha-1 yr-1). This increase was associated with a 6fold increase in aboveground biomass, but only a 3.5fold increase in root biomass, indicating a clear shift in C allocation to aboveground tree organs with increasing shade for both cacao and shade trees. Despite a canopy cover increase from 50 to 93%, cacao bean yield remained invariant across the systems (variation: 1.1–1.2 Mg C ha-1 yr-1). The monocultures had a twice as rapid leaf turnover suggesting that shading reduces the exposure of cacao to atmospheric drought, probably resulting in greater leaf longevity. Thus, contrary to general belief, cacao bean yield does not necessarily decrease under shading which seems to reduce physical stress. If planned properly, cacao plantations under a shade tree cover allow combining high yield with benefits for carbon sequestration and storage, production system stability under stress, and higher levels of animal and plant diversity. PMID:26927428

Cacao Cultivation under Diverse Shade Tree Cover Allows High Carbon Storage and Sequestration without Yield Losses.

PubMed

Abou Rajab, Yasmin; Leuschner, Christoph; Barus, Henry; Tjoa, Aiyen; Hertel, Dietrich

2016-01-01

One of the main drivers of tropical forest loss is their conversion to oil palm, soy or cacao plantations with low biodiversity and greatly reduced carbon storage. Southeast Asian cacao plantations are often established under shade tree cover, but are later converted to non-shaded monocultures to avoid resource competition. We compared three co-occurring cacao cultivation systems (3 replicate stands each) with different shade intensity (non-shaded monoculture, cacao with the legume Gliricidia sepium shade trees, and cacao with several shade tree species) in Sulawesi (Indonesia) with respect to above- and belowground biomass and productivity, and cacao bean yield. Total biomass C stocks (above- and belowground) increased fivefold from the monoculture to the multi-shade tree system (from 11 to 57 Mg ha-1), total net primary production rose twofold (from 9 to 18 Mg C ha-1 yr-1). This increase was associated with a 6fold increase in aboveground biomass, but only a 3.5fold increase in root biomass, indicating a clear shift in C allocation to aboveground tree organs with increasing shade for both cacao and shade trees. Despite a canopy cover increase from 50 to 93%, cacao bean yield remained invariant across the systems (variation: 1.1-1.2 Mg C ha-1 yr-1). The monocultures had a twice as rapid leaf turnover suggesting that shading reduces the exposure of cacao to atmospheric drought, probably resulting in greater leaf longevity. Thus, contrary to general belief, cacao bean yield does not necessarily decrease under shading which seems to reduce physical stress. If planned properly, cacao plantations under a shade tree cover allow combining high yield with benefits for carbon sequestration and storage, production system stability under stress, and higher levels of animal and plant diversity.

Nitrous oxide fluxes from cultivated areas and rangeland: U.S. High Plains

USGS Publications Warehouse

Weeks, Edwin P.; McMahon, Peter B.

2007-01-01

Concentration profiles of N2O, a greenhouse gas, and the conservative trace gases SF6 and the chlorofluorocarbons CFC-11, CFC-12, CFC-113, and were measured periodically through thick vadose zones at nine sites in the U.S. High Plains. The CFC and SF6 measurements were used to calibrate a one-dimensional gas diffusion model, using the parameter identification program UCODE. The calibrated model was used with N2O measurements to estimate average annual N2O flux from both the root zone and the deep vadose zone to the atmosphere. Estimates of root-zone N 2O fluxes from three rangeland sites ranged from near 0 to about 0.2 kg N2O-N ha-1 yr-1, values near the low end of the ranges determined for native grass from other studies. Estimates of root-zone N2O fluxes from two fields planted to corn (Zea mays L.) of about 2 to 6 kg N2O-N ha-1 yr-1 are similar to those determined for corn in other studies. Estimates of N2O flux from Conservation Reserve grassland converted from irrigated corn indicate that production of N2O is substantially reduced following conversion from cropland. Small N2O fluxes from the water table or from deep in the vadose zone occurred at three sites, ranging from 0.004 to 0.02 kg N 2O-N ha-1 yr-1. Our estimates of N2O flux represent space- and time-averaged values that should be useful to more fully evaluate the significance of instantaneous point flux measurements. ?? Soil Science Society of America.

Extraction of hyaluronic acid (HA) from rooster comb and characterization using flow field-flow fractionation (FlFFF) coupled with multiangle light scattering (MALS).

PubMed

Kang, Dong Young; Kim, Won-Suk; Heo, In Sook; Park, Young Hun; Lee, Seungho

2010-11-01

Hyaluronic acid (HA) was extracted in a relatively large scale from rooster comb using a method similar to that reported previously. The extraction method was modified to simplify and to reduce time and cost in order to accommodate a large-scale extraction. Five hundred grams of frozen rooster combs yielded about 500 mg of dried HA. Extracted HA was characterized using asymmetrical flow field-flow fractionation (AsFlFFF) coupled online to a multiangle light scattering detector and a refractive index detector to determine the molecular size, molecular weight (MW) distribution, and molecular conformation of HA. For characterization of HA, AsFlFFF was operated by a simplified two-step procedure, instead of the conventional three-step procedure, where the first two steps (sample loading and focusing) were combined into one to avoid the adsorption of viscous HA onto the channel membrane. The simplified two-step AsFlFFF yielded reasonably good separations of HA molecules based on their MWs. The weight average MW (M(w) ) and the average root-mean-square (RMS) radius of HA extracted from rooster comb were 1.20×10(6) and 94.7 nm, respectively. When the sample solution was filtered through a 0.45 μm disposable syringe filter, they were reduced down to 3.8×10(5) and 50.1 nm, respectively. Copyright © 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Potential Regulatory Role of Gibberellic and Humic Acids in Sprouting of Chlorophytum borivilianum Tubers

PubMed Central

Puteh, Adam; Hassan, Siti Aishah

2014-01-01

Tubers of safed musli (Chlorophytum borivilianum) were immersed in three different concentrations of gibberellic acid (GA3) or humic acid (HA) prior to planting. The highest concentration of GA3 (20 mg L−1) and all concentrations of HA (5, 10, and 15%) appeared to hasten tuber sprouting and promote uniform sprouting pattern. The use of 20 mg L−1 GA3 or 15% HA successfully improved sprouting and mean sprouting time. Safed musli growth and development was improved through the increase in the number of leaves, total leaf area, leaf area index, and total fibrous root length. This directly influenced the number of new tubers formed. The use of 20 mg L−1 GA3 or 15% HA gave similar response with nonsignificant difference among them. However, due to the cost of production, the result from this study suggests that 15% HA should be used to obtain improved sprouting percentage, homogeneous stand establishment, efficient plant growth and development, and increased yield of safed musli. PMID:24688363

Effect of drought on fine roots productivity in poplar-based short rotation coppice

NASA Astrophysics Data System (ADS)

Mani Tripathi, Abhishek; Fischer, Milan; Berhongaray, Gonzalo; Orság, Matěj; Trnka, Miroslav

2015-04-01

Short rotation woody crops (SRWC) are alternative source of bioenergy, which apart from their 'carbon neutrality' have potential to store carbon (C) into soil and mitigate the increasing CO2 emission. Studies of below ground biomass of trees are divided into two types according to root diameter - analysis of fine roots (less than 2 mm) and coarse roots (more than 2 mm). Trees roots are spatially highly heterogeneous and it requires large number of samples to obtain a representative estimate of belowground biomass. For this study we used hybrid poplar clone J-105 (Populus nigra x P. maximowiczii) grown under short rotation coppice system in the region of Bohemian-Moravian Highland (49o32'N, 16o15'E and altitude 530 m a.s.l.) since April 2000. The plantation with planting density of 9,216 trees ha-1 was established on the former agricultural land and the length of the rotation cycle was set to 6-8 years. While mean annual rainfall was 609 mm with mean annual temperature 7.2oC during 1981-2013 significant increase of temperature and more frequent droughts are expected. In 2011, we established drought experiment based on throughfall exclusion system, reducing up to 70 % of throughfall precipitation. Thus 2 treatments with normal and lowered soil moisture levels were introduced. In January and February 2014, we cored 18 places including drought and control using root bipartite auger. The main goal of the study is to assess the response of fine roots productivity and fine roots vertical distribution on the reduced soil water availability. Results will be presented at the conference. Acknowledgements: This study was funded by research project IGA Mendel University 2014 "Study of below ground biomass in short rotation poplar coppice (J-105) in the Czech-Moravian Highlands", project PASED (KONTAKT II LH12037 ʺDevelopment of models for the assessment of abiotic stresses in selected energy woody plantsʺ and "Building up a multidisciplinary scientific team focused on drought" No. CZ.1.07/2.3.00/20.0248.

The effect of modifying rooting depths and nitrification inhibitors on nutrient uptake from organic biogas residues in maize

NASA Astrophysics Data System (ADS)

Dietrich, Charlotte C.; Koller, Robert; Nagel, Kerstin A.; Schickling, Anke; Schrey, Silvia D.; Jablonowski, Nicolai D.

2017-04-01

Optimizing the application of and nutrient uptake from organic nutrient sources, such as the nutrient-rich residues ("digestates") from the biogas industry, is becoming a viable option in remediating fertility on previously unsuitable soils for agricultural utilization. Proposedly, concurrent changes in root system architecture and functioning could also serve as the basis of future phytomining approaches. Herein, we evaluate the effect of spatial nutrient availability and nitrification on maize root architecture and nutrient uptake. We test these effects by applying maize-based digestate at a rate of 170 kg/ha in layers of varying depths (10, 25 and 40 cm) and through either the presence or absence of nitrification inhibitors. In order to regularly monitor above- and below-ground plant biomass production, we used the noninvasive phenotyping platform, GROWSCREEN-Rhizo at the Forschungszentrum Jülich, using rhizotrons (Nagel et al., 2012). Measured parameters included projected plant height and leaf area, as well as root length and spatial distribution. Additionally, root diameters were quantified after the destructive harvest, 21 days after sowing (DAS). Spatial nutrient availability significantly affected root system architecture, as for example root system size -the area occupied by roots- increased alongside nutrient layer depths. Fertilization also positively affected root length density (RLD). Within fertilized layers, the presence of nitrification inhibitors increased RLD by up to 30% and was most pronounced in the fine root biomass fraction (0.1 to 0.5mm). Generally, nitrification inhibitors promoted early plant growth by up to 45% across treatments. However, their effect varied in dependence of layer depths, leading to a time-delayed response in deeper layers, accounting for plants having to grow significantly longer roots in order to reach fertilized substrate. Nitrification inhibitors also initiated the comparatively early on-set of growth differences in shallower layers, where their effect on plant growth was temporarily most pronounced. At final harvest (21 DAS) however, effects of nitrification inhibitors on plant height were visible only in deeper layers. Furthermore, the statistically significant interaction between the factors time x layer depths x nitrification inhibitors underlined the dynamic influence of nitrification inhibitors on plant growth over time and across rooting depths. This study offers insights into optimizing nutrient uptake and plant productivity by (re-) using residues from the biogas industry. It is among the first to monitor and try to explain the dynamics of nitrification inhibitors on root system architecture over time. A modified N-fertilization application scheme might also serve as a promising tool in optimizing phytoremediation and phytomining techniques through predictably altering root structure in fertilized layers. References: Nagel, K. A. ; Putz, A. ; Gilmer, F. ; Heinz, K. ; Fischbach, A. ; Pfeifer, J. ; Faget, M. ; Blossfeld, S. ; Ernst, M. ; Dimaki, C. ; Kastenholz, B. ; Kleinert, A.-K. ; Galinski, A. ; Scharr, H. ; Fiorani, F. ; Schurr, U. (2012): GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons.
Functional plant biology 39(11), 891-904.

Physiological and morphological responses of Ischaemum rugosum Salisb. (wrinkled grass) to different nitrogen rates and rice seeding rates.

PubMed

Awan, Tahir Hussain; Chauhan, Bhagirath Singh; Cruz, Pompe C Sta

2014-01-01

Ischaemum rugosum is a competitive weed in direct-seeded rice systems. Developing integrated weed management strategies that promote the suppression of weeds by crop density, cultivar selection, and nutrition requires better understanding of the extent to which rice interferes with the growth of this weed and how it responds to resource limitation due to rice interference. The growth of I. rugosum was studied when grown with four rice seeding rates (0, 25, 50, and 100 kg ha(-1)) and four nitrogen (N) rates (0, 50, 100, and 150 kg ha(-1)). Compared to the weed plants grown alone, weed tiller number was reduced by 63-80%, leaf number by 68-77%, leaf area by 69-77%, leaf biomass by 72-84%, and inflorescence biomass by 81-93% at the rice seeding rates of 25-100 kg ha(-1). All these parameters increased with increasing rates of N from 0 to 150 kg ha(-1). At weed maturity, I. rugosum plants were 100% taller than rice at 0 kg N ha(-1), whereas, with added N, the weeds were only 50% taller than rice. Weed biomass increased by 82-160%, whereas rice biomass increased by 92-229%, with the application of 50-150 kg N ha(-1). Added N favored rice biomass production more than it did the weed. Rice interference reduced the height and biomass of I. rugosum, but did not suppress its growth completely. I. rugosum showed the ability to reduce the effects of rice interference by increasing leaf area, leaf weight ratio, and specific leaf area, and by decreasing the root-shoot weight ratio in comparison to the weed plants grown alone. The results suggest that rice crop interference alone may reduce I. rugosum growth but may not provide complete control of this weed. The need for integrated weed management practices to effectively control this weed species is highlighted.

Phytoextraction of soil trace elements by willow during a phytoremediation trial in Southern Québec, Canada.

PubMed

Courchesne, François; Turmel, Marie-Claude; Cloutier-Hurteau, Benoît; Constantineau, Simon; Munro, Lara; Labrecque, Michel

2017-06-03

The phytoextraction of the trace elements (TEs) As, Cd, Cu, Ni, Pb, and Zn by willow cultivars (Fish Creek, SV1 and SX67) was measured during a 3-year field trial in a mildly contaminated soil. Biomass ranged from 2.8 to 4.4 Mg/ha/year at 30,000 plants/ha. Shoots (62%) were the main component followed by leaves (23%) and roots (15%). Biomass was positively linked to soluble soil dissolved organic carbon, K, and Mg, while TEs, not Cd and Zn, had a negative effect. The TE concentration ranking was: Zn > Cu > Cd > Ni, Pb > As, and distribution patterns were: (i) minima in shoots (As, Ni), (ii) maxima in leaves (Cd, Zn), or (iii) maxima in roots (Cu, Pb). Correlations between soil and plant TE were significant for the six TEs in roots. The amounts extracted were at a maximum for Zn, whereas Fish Creek and SV1 extracted more TE than SX67. More than 60% (91-94% for Cd and Zn) of the total TE was in the aboveground parts. Uptake increased with time because of higher biomass. Fertilization, the selection of cultivars, and the use of complementary plants are required to improve productivity and Cd and Zn uptake.

Influence of Environmental Factors, Cultural Practices, and Herbicide Application on Seed Germination and Emergence Ecology of Ischaemum rugosum Salisb.

PubMed

Lim, Charlemagne Alexander A; Awan, Tahir Hussain; Sta Cruz, Pompe C; Chauhan, Bhagirath Singh

2015-01-01

Ischaemum rugosum Salisb. (Saramolla grass) is a noxious weed of rice that is difficult to control by chemical or mechanical means once established. A study was conducted to determine the effect of light, temperature, salt, drought, flooding, rice residue mulch, burial depth, and pre-emergence herbicides on seed germination and emergence of I. rugosum. Germination was stimulated by light and inhibited under complete darkness. Optimum temperature for germination was 30/20°C (97.5% germination). Germination reduced from 31 to 3.5% when the osmotic potential of the growing medium decreased from -0.1 to -0.6 MPa and no germination occurred at -0.8 MPa. Germination was 18 and 0.5% at 50 and 100 mM NaCl concentrations, respectively, but was completely inhibited at 150 mM or higher. Residue application at 1-6 t ha-1 reduced weed emergence by 35-88% and shoot biomass by 55-95%. The efficacy of pre-emergence herbicides increased with increasing application rates and decreased with increasing rice residue mulching. The efficacy of herbicides was in the order of oxadiazon> pendimethalin> pretilachlor. At 6 t ha-1, all herbicides, regardless of rates, did not differ from the control treatment. I. rugosum seeds buried at 2 cm or deeper did not emerge; however, they emerged by 4.5 and 0.5% at 0.5 and 1 cm depths, respectively, compared to the 39% germination for soil surface seeding. Flooding at 4 DAS or earlier reduced seedling emergence and shoot biomass while flooding at 8 DAS reduced only seedling emergence. The depth and timing of flooding independently reduced root biomass. Flooding at 4 and 6 cm depths reduced the root biomass. Relative to flooding on the day of sowing, flooding at 8 DAS increased root biomass by 89%. Similarly, flooding on the day of sowing and at 2 DAS reduced the root-shoot biomass ratio. Under the no-flood treatment, increasing rates of pretilachlor from 0.075 to 0.3 kg ai ha-1 reduced weed emergence by 61-79%. At the flooding depth of 2-4 cm, pretilachlor reduced weed emergence and shoot and root biomass, but the differences across rates were non-significant. Information generated in this study will be helpful in developing integrated weed management strategies for managing this weed.

Impact of axial root growth angles on nitrogen acquisition in maize depends on environmental conditions.

PubMed

Dathe, A; Postma, J A; Postma-Blaauw, M B; Lynch, J P

2016-09-01

Crops with reduced requirement for nitrogen (N) fertilizer would have substantial benefits in developed nations, while improving food security in developing nations. This study employs the functional structural plant model SimRoot to test the hypothesis that variation in the growth angles of axial roots of maize (Zea mays L.) is an important determinant of N capture. Six phenotypes contrasting in axial root growth angles were modelled for 42 d at seven soil nitrate levels from 10 to 250 kg ha(-1) in a sand and a silt loam, and five precipitation regimes ranging from 0·5× to 1·5× of an ambient rainfall pattern. Model results were compared with soil N measurements of field sites with silt loam and loamy sand textures. For optimal nitrate uptake, root foraging must coincide with nitrate availability in the soil profile, which depends on soil type and precipitation regime. The benefit of specific root architectures for efficient N uptake increases with decreasing soil N content, while the effect of soil type increases with increasing soil N level. Extreme root architectures are beneficial under extreme environmental conditions. Extremely shallow root systems perform well under reduced precipitation, but perform poorly with ambient and greater precipitation. Dimorphic phenotypes with normal or shallow seminal and very steep nodal roots performed well in all scenarios, and consistently outperformed the steep phenotypes. Nitrate uptake increased under reduced leaching conditions in the silt loam and with low precipitation. Results support the hypothesis that root growth angles are primary determinants of N acquisition in maize. With decreasing soil N status, optimal angles resulted in 15-50 % greater N acquisition over 42 d. Optimal root phenotypes for N capture varied with soil and precipitation regimes, suggesting that genetic selection for root phenotypes could be tailored to specific environments. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Nematicidal Activity of trans-2-Hexenal against Southern Root-Knot Nematode (Meloidogyne incognita) on Tomato Plants.

PubMed

Lu, Hongbao; Xu, Shuangyu; Zhang, Wenjuan; Xu, Chunmei; Li, Beixing; Zhang, Daxia; Mu, Wei; Liu, Feng

2017-01-25

Botanical nematicides have recently received increasing interest because of the high risks of some traditional nematicides to human health and the environment. This study evaluated the nematicidal activity of a plant volatile, trans-2-hexenal, against Meloidogyne incognita. This compound exhibited higher activity in a fumigation experiment than in the aqueous phase in vitro. Both in pot tests and in field trials, trans-2-hexenal showed significant efficacy against M. incognita while maintaining excellent plant growth, especially at doses of 1000 and 500 L ha -1 , which were superior to that of abamectin at 180 g ha -1 via hole application treatment but not significantly different from fumigation with 400 kg ha -1 of dazomet. Furthermore, plants treated with 500 L ha -1 trans-2-hexenal had fruit yields 20.2 and 45% greater than the control group. On this basis, trans-2-hexenal may be a potential alternative fumigation agent for controlling M. incognita on tomato crops.

Utilization of heavy metal-rich tannery sludge for sweet basil (Ocimum basilicum L.) cultivation.

PubMed

Chand, Sukhmal; Singh, Shweta; Singh, Vinay Kumar; Patra, D D

2015-05-01

Unlike food crops, essential oil-bearing crops in which the oil is extracted through hydro-distillation can be a suitable crop to be grown in heavy metal-polluted soils as the oil does not carry any heavy metal. In a field experiment conducted at CIMAP, Lucknow, India during 2011 and 2012, influence of six doses of tannery sludge viz 0, 10, 20, 30, 40, and 50 t ha(-1) were tested, taking sweet basil (Ocimum basilicum) as the test crop. Maximum herb yield was obtained with the application of sludge at 20 t ha(-1). While in root, accumulation of Cd and Pb increased significantly up to 20 t ha(-1), Cr accumulation increased with increasing the dose of tannery sludge reaching maximum at 50 t ha(-1). Essential oil yield of basil (Ocimum basilicum) was significantly affected due to sludge application. Quality of essential oil, in term of chemical constituents, however, was marginally influenced due to tannery sludge application.

Near infrared spectroscopy combined with multivariate analysis for monitoring the ethanol precipitation process of fraction I + II + III supernatant in human albumin separation

NASA Astrophysics Data System (ADS)

Li, Can; Wang, Fei; Zang, Lixuan; Zang, Hengchang; Alcalà, Manel; Nie, Lei; Wang, Mingyu; Li, Lian

2017-03-01

Nowadays, as a powerful process analytical tool, near infrared spectroscopy (NIRS) has been widely applied in process monitoring. In present work, NIRS combined with multivariate analysis was used to monitor the ethanol precipitation process of fraction I + II + III (FI + II + III) supernatant in human albumin (HA) separation to achieve qualitative and quantitative monitoring at the same time and assure the product's quality. First, a qualitative model was established by using principal component analysis (PCA) with 6 of 8 normal batches samples, and evaluated by the remaining 2 normal batches and 3 abnormal batches. The results showed that the first principal component (PC1) score chart could be successfully used for fault detection and diagnosis. Then, two quantitative models were built with 6 of 8 normal batches to determine the content of the total protein (TP) and HA separately by using partial least squares regression (PLS-R) strategy, and the models were validated by 2 remaining normal batches. The determination coefficient of validation (Rp2), root mean square error of cross validation (RMSECV), root mean square error of prediction (RMSEP) and ratio of performance deviation (RPD) were 0.975, 0.501 g/L, 0.465 g/L and 5.57 for TP, and 0.969, 0.530 g/L, 0.341 g/L and 5.47 for HA, respectively. The results showed that the established models could give a rapid and accurate measurement of the content of TP and HA. The results of this study indicated that NIRS is an effective tool and could be successfully used for qualitative and quantitative monitoring the ethanol precipitation process of FI + II + III supernatant simultaneously. This research has significant reference value for assuring the quality and improving the recovery ratio of HA in industrialization scale by using NIRS.

Near infrared spectroscopy combined with multivariate analysis for monitoring the ethanol precipitation process of fraction I+II+III supernatant in human albumin separation.

PubMed

Li, Can; Wang, Fei; Zang, Lixuan; Zang, Hengchang; Alcalà, Manel; Nie, Lei; Wang, Mingyu; Li, Lian

2017-03-15

Nowadays, as a powerful process analytical tool, near infrared spectroscopy (NIRS) has been widely applied in process monitoring. In present work, NIRS combined with multivariate analysis was used to monitor the ethanol precipitation process of fraction I+II+III (FI+II+III) supernatant in human albumin (HA) separation to achieve qualitative and quantitative monitoring at the same time and assure the product's quality. First, a qualitative model was established by using principal component analysis (PCA) with 6 of 8 normal batches samples, and evaluated by the remaining 2 normal batches and 3 abnormal batches. The results showed that the first principal component (PC1) score chart could be successfully used for fault detection and diagnosis. Then, two quantitative models were built with 6 of 8 normal batches to determine the content of the total protein (TP) and HA separately by using partial least squares regression (PLS-R) strategy, and the models were validated by 2 remaining normal batches. The determination coefficient of validation (R p 2 ), root mean square error of cross validation (RMSECV), root mean square error of prediction (RMSEP) and ratio of performance deviation (RPD) were 0.975, 0.501g/L, 0.465g/L and 5.57 for TP, and 0.969, 0.530g/L, 0.341g/L and 5.47 for HA, respectively. The results showed that the established models could give a rapid and accurate measurement of the content of TP and HA. The results of this study indicated that NIRS is an effective tool and could be successfully used for qualitative and quantitative monitoring the ethanol precipitation process of FI+II+III supernatant simultaneously. This research has significant reference value for assuring the quality and improving the recovery ratio of HA in industrialization scale by using NIRS. Copyright © 2016 Elsevier B.V. All rights reserved.

The sunflower transcription factor HaHB11 confers tolerance to water deficit and salinity to transgenic Arabidopsis and alfalfa plants.

PubMed

Cabello, Julieta V; Giacomelli, Jorge I; Gómez, María C; Chan, Raquel L

2017-09-10

Homeodomain-leucine zipper (HD-Zip) transcription factors are unique to the plant kingdom; members of subfamily I are known to be involved in abiotic stress responses. HaHB11 belongs to this subfamily and it was previously shown that it is able to confer improved yield and tolerance to flooding via a quiescent strategy. Here we show that HaHB11 expression is induced by ABA, NaCl and water deficit in sunflower seedlings and leaves. Arabidopsis transgenic plants expressing HaHB11, controlled either by its own promoter or by the constitutive 35S CaMV, presented rolled leaves and longer roots than WT when grown under standard conditions. In addition, these plants showed wider stems and more vascular bundles. To deal with drought, HaHB11 transgenic plants closed their stomata faster and lost less water than controls, triggering an enhanced tolerance to such stress condition and also to salinity stress. Concomitantly, ABA-synthesis and sensing related genes were differentially regulated in HaHB11 transgenic plants. Either under long-term salinity stress or mild drought stress, HaHB11 transgenic plants did not exhibit yield penalties. Moreover, alfalfa transgenic plants were generated which also showed enhanced drought tolerance. Altogether, the results indicated that HaHB11 was able to confer drought and salinity tolerance via a complex mechanism which involves morphological, physiological and molecular changes. Copyright © 2016 Elsevier B.V. All rights reserved.

Below and above-ground carbon distribution along a rainfall gradient. A case of the Zambezi teak forests, Zambia

NASA Astrophysics Data System (ADS)

Ngoma, Justine; Moors, Eddy; Kruijt, Bart; Speer, James H.; Vinya, Royd; Chidumayo, Emmanuel N.; Leemans, Rik

2018-02-01

Understanding carbon (C) stocks or biomass in forests is important to examine how forests mitigate climate change. To estimate biomass in stems, branches and roots takes intensive fieldwork to uproot, cut and weigh the mass of each component. Different models or equations are also required. Our research focussed on the dry tropical Zambezi teak forests and we studied their structure at three sites following a rainfall gradient in Zambia. We sampled 3558 trees at 42 plots covering a combined area of 15ha. Using data from destructive tree samples, we developed mixed-species biomass models to estimate above ground biomass for small (<5 cm diameter at breast height (DBH, 1.3 m above-ground)) and large (≥5 cm DBH) trees involving 90 and 104 trees respectively, that belonged to 12 species. A below-ground biomass model was developed from seven trees of three species (16-44 cm DBH) whose complete root systems were excavated. Three stump models were also derived from these uprooted trees. Finally, we determined the C fractions from 194 trees that belonged to 12 species. The analysis revealed that DBH was the only predictor that significantly correlated to both above-ground and below-ground biomass. We found a mean root-to-shoot ratio of 0.38:0.62. The C fraction in leaves ranged from 39% to 42%, while it varied between 41% and 46% in wood. The C fraction was highest at the Kabompo site that received the highest rainfall, and lowest at the intermediate Namwala site. The C stocks varied between 15 and 36 ton C ha-1 and these stocks where highest at the wetter Kabompo site and lowest at the drier Sesheke site. Our results indicate that the projected future rainfall decrease for southern Africa, will likely reduce the C storage potential of the Zambezi teak forests, thereby adversely affecting their mitigating role in climate change.

Irrigation and Nitrogen Regimes Promote the Use of Soil Water and Nitrate Nitrogen from Deep Soil Layers by Regulating Root Growth in Wheat.

PubMed

Liu, Weixing; Ma, Geng; Wang, Chenyang; Wang, Jiarui; Lu, Hongfang; Li, Shasha; Feng, Wei; Xie, Yingxin; Ma, Dongyun; Kang, Guozhang

2018-01-01

Unreasonably high irrigation levels and excessive nitrogen (N) supplementation are common occurrences in the North China Plain that affect winter wheat production. Therefore, a 6-yr-long stationary field experiment was conducted to investigate the effects of irrigation and N regimes on root development and their relationship with soil water and N use in different soil layers. Compared to the non-irrigated treatment (W0), a single irrigation at jointing (W1) significantly increased yield by 3.6-45.6%. With increases in water (W2, a second irrigation at flowering), grain yield was significantly improved by 14.1-45.3% compared to the W1 treatments during the drier growing seasons (2010-2011, 2012-2013, and 2015-2016). However, under sufficient pre-sowing soil moisture conditions, grain yield was not increased, and water use efficiency (WUE) decreased significantly in the W2 treatments during normal precipitation seasons (2011-2012, 2013-2014, and 2014-2015). Irrigating the soil twice inhibited root growth into the deeper soil depth profiles and thus weakened the utilization of soil water and NO 3 -N from the deep soil layers. N applications increased yield by 19.1-64.5%, with a corresponding increase in WUE of 66.9-83.9% compared to the no-N treatment (N0). However, there was no further increase in grain yield and the WUE response when N rates exceeded 240 and 180 kg N ha -1 , respectively. A N application rate of 240 kg ha -1 facilitated root growth in the deep soil layers, which was conducive to utilization of soil water and NO 3 -N and also in reducing the residual NO 3 -N. Correlation analysis indicated that the grain yield was significantly positively correlated with soil water storage (SWS) and nitrate nitrogen accumulation (SNA) prior to sowing. Therefore, N rates of 180-240 kg ha -1 with two irrigations can reduce the risk of yield loss that occurs due to reduced precipitation during the wheat growing seasons, while under better soil moisture conditions, a single irrigation at jointing was effective and more economical.

Effects of supplement with sanitary landfill leachate in gas exchange of sunflower (Helianthus annuus L.) seedlings under drought stress.

PubMed

Nunes Junior, Francisco H; Freitas, Valdineia S; Mesquita, Rosilene O; Braga, Brennda B; Barbosa, Rifandreo M; Martins, Kaio; Gondim, Franklin A

2017-10-01

Sanitary landfill leachate is one of the major problems arising from disposal of urban waste. Sanitary landfill leachate may, however, have use in agriculture. This study, therefore, aimed to analyze initial plant growth and gas exchange in sunflower seedlings supplemented with sanitary landfill leachate and subjected to drought stress through variables of root fresh mass (RFM), shoot fresh mass (SFM), total fresh mass (TFM), relative chlorophyll content (CL), stomatal conductance (g s ), transpiration rate (E), net photosynthetic rate (A), ratio of internal to external CO 2 concentration (Ci/Ca),water use efficiency (EUA), instantaneous carboxylation efficiency (A/Ci), and electron transport rate (ETR). The experimental design was a completely randomized 2 (irrigated and non-irrigated) × 4 (sand, sand + 100 kg N ha -1 organic fertilizer, sand + 100 kg N ha -1 sanitary landfill leachate, and sand + 150 kg N ha -1 sanitary landfill leachate) factorial with five replicates. Under drought stress conditions, leachate treatment supplemented with 100 kg N ha -1 exhibited higher plant fresh weights than those of the treatment containing 150 kg N ha -1 . Increases in fresh mass in plant treatments supplemented with 100 and 150 kg N ha -1 sanitary landfill leachate were related to higher photosynthetic rates.

Agricultural recycling of treatment-plant sludge: a case study for a vegetable-processing factory.

PubMed

Dolgen, Deniz; Alpaslan, M Necdet; Delen, Nafiz

2007-08-01

The present study evaluated the possibility of using the sludge produced by a vegetable-processing factory in agriculture. The sludge was amended with a soil mixture (i.e., a mixture of sand, soil, and manure) and was applied at 0, 165, 330, 495 and 660 t/ha to promote the growth of cucumbers. The effects of various sludge loadings on plant growth were assessed by counting plants and leaves, measuring stem lengths, and weighing the green parts and roots of the plants. We also compared heavy metal uptake by the plants for sludge loadings of 330, 495, and 660 t/ha with various recommended standards for vegetables. Our results showed that plant growth patterns were influenced to some extent by the sludge loadings. In general, the number of leaves, stem length, and dry weight of green parts exhibited a pronounced positive growth response compared with an unfertilized control, and root growth showed a lesser but still significant response at sludge loadings of 165 and 330 t/ha. The sludge application caused no significant increase in heavy metal concentrations in the leaves, though zinc (Zn) and iron (Fe) were found at elevated concentrations. However, despite the Zn and Fe accumulation, we observed no toxicity symptoms in the plants. This may be a result of cucumber's tolerance of high metal levels.

Rational Water and Nitrogen Management Improves Root Growth, Increases Yield and Maintains Water Use Efficiency of Cotton under Mulch Drip Irrigation

PubMed Central

Zhang, Hongzhi; Khan, Aziz; Tan, Daniel K. Y.; Luo, Honghai

2017-01-01

There is a need to optimize water-nitrogen (N) applications to increase seed cotton yield and water use efficiency (WUE) under a mulch drip irrigation system. This study evaluated the effects of four water regimes [moderate drip irrigation from the third-leaf to the boll-opening stage (W1), deficit drip irrigation from the third-leaf to the flowering stage and sufficient drip irrigation thereafter (W2), pre-sowing and moderate drip irrigation from the third-leaf to the boll-opening stage (W3), pre-sowing and deficit drip irrigation from the third-leaf to the flowering stage and sufficient drip irrigation thereafter (W4)] and N fertilizer at a rate of 520 kg ha-1 in two dressing ratios [7:3 (N1), 2:8 (N2)] on cotton root morpho-physiological attributes, yield, WUE and the relationship between root distribution and dry matter production. Previous investigations have shown a strong correlation between root activity and water consumption in the 40–120 cm soil layer. The W3 and especially W4 treatments significantly increased root length density (RLD), root volume density (RVD), root mass density (RMD), and root activity in the 40–120 cm soil layer. Cotton RLD, RVD, RMD was decreased by 13.1, 13.3, and 20.8%, respectively, in N2 compared with N1 at 70 days after planting (DAP) in the 0–40 cm soil layer. However, root activity in the 40–120 cm soil layer at 140 DAP was 31.6% higher in N2 than that in N1. Total RMD, RLD and root activity in the 40–120 cm soil were significantly and positively correlated with shoot dry weight. RLD and root activity in the 40–120 cm soil layer was highest in the W4N2 treatments. Therefore increased water consumption in the deep soil layers resulted in increased shoot dry weight, seed cotton yield and WUE. Our data can be used to develop a water-N management strategy for optimal cotton yield and high WUE. PMID:28611817

Evaluation of reforestation in the Lower Mississippi River Alluvial Valley

USGS Publications Warehouse

King, S.L.; Keeland, B.D.

1999-01-01

Only about 2.8 million ha of an estimated original 10 million ha of bottomland hardwood forests still exist in the Lower Mississippi River Alluvial Valley (LMAV) of the United States. The U.S. Fish and Wildlife Service, the U.S. Forest Service, and state agencies initiated reforestation efforts in the late 1980s to improve wildlife habitat. We surveyed restorationists responsible for reforestation in the LMAV to determine the magnitude of past and future efforts and to identify major limiting factors. Over the past 10 years, 77,698 ha have been reforested by the agencies represented in our survey and an additional 89,009 ha are targeted in the next 5 years. Oaks are the most commonly planted species and bare-root seedlings are the most commonly used planting stock. Problems with seedling availability may increase the diversity of plantings in the future. Reforestation in the LMAV is based upon principles of landscape ecology; however, local problems such as herbivory, drought, and flooding often limit success. Broad-scale hydrologic restoration is needed to fully restore the structural and functional attributes of these systems, but because of drastic and widespread hydrologic alterations and socioeconomic constraints, this goal is generally not realistic. Local hydrologic restoration and creation of specific habitat features needed by some wildlife and fish species warrant attention. More extensive analyses of plantings are needed to evaluate functional success. The Wetland Reserve Program is a positive development, but policies that provide additional financial incentives to landowners for reforestation efforts should be seriously considered.

Effects of land clearing techniques and tillage systems on runoff and soil erosion in a tropical rain forest in Nigeria.

PubMed

Ehigiator, O A; Anyata, B U

2011-11-01

This work reports runoff and soil loss from each of 14 sub-watersheds in a secondary rain forest in south-western Nigeria. The impact of methods of land clearing and post-clearing management on runoff and soil erosion under the secondary forest is evaluated. These data were acquired eighteen years after the deforestation of primary vegetation during the ' West bank' project of the International Institute for Tropical Agriculture (IITA). These data are presented separately for each season; however, statistical analyses for replicates were not conducted due to differences in their past management. Soil erosion was affected by land clearing and tillage methods. The maximum soil erosion was observed on sub-watersheds that were mechanically cleared with tree-pusher/root-rake attachments and tilled conventionally. A high rate of erosion was observed even when graded-channel terraces were constructed to minimize soil erosion. In general there was much less soil erosion on manually cleared than on mechanically cleared sub-watersheds (2.5 t ha(-1) yr(-1) versus 13.8 t ha(-1) yr(-1)) and from the application of no-tillage methods than from conventionally plowed areas (6.5 t ha(-1) yr(-1) versus 12.1 t ha(-1) yr(-1)). The data indicate that tillage methods and appropriate management of soils and crops play an important role in soil and water conservation and in decreasing the rate of decline of soil quality. Copyright © 2011 Elsevier Ltd. All rights reserved.

Toxicity, absorption, translocation, and metabolism of chlorimuron in yellow and purple nutsedge (Cyperus esculentus and C. rotundus)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reddy, K.N.

1987-01-01

Greenhouse, laboratory, and field studies were conducted to investigate the activity of soil and foliar applied chlorimuron on yellow and purple nutsedge. Soil-applied chlorimuron (10 to 60 g/ha) significantly decreased tuber sprouting, shoot emergence, and shoot growth in both yellow and purple nutsedge. Previous exposure to soil-applied chlorimuron was not effective in reducing parent tuber sprouting at any rate in yellow nutsedge, while in purple nutsedge parent tuber sprouting was reduced significantly at 60 g/ha. Shoots of both yellow and purple nutsedge propagules absorbed greater amounts of /sup 14/C than did roots and tubers. However, translocation of /sup 14/C wasmore » greater from the roots and tuber than from the shoot. Toxicity of foliar-applied chlorimuron (5 to 30 g/ha) was evident by stunted growth, leaf discoloration, and death in both species. Application of chlorimuron at 20 g/ha gave 84% control in yellow nutsedge and 100% control in purple nutsedge. Chlorimuron treatments reduced shoot dry weight, inhibited secondary shoot production, and killed parent tubers attached to treated plants, regardless of rats, in both species. Over 13% of the foliar-applied /sup 14/C recovered was absorbed and over 15% of that absorbed was translocated at 1 day after application in both species. This increased two-fold by 8 days after application. /sup 14/C translocation was both acropetal and basipetal. Over 68% of the absorbed /sup 14/C in yellow nutsedge and 63% in purple nutsedge was retained in the treated area at 8 days after application. Overall, the basal bulb, rhizomes, and tuber had the least amounts of /sup 14/C in both species.« less

Rhizobacteria in mycorrhizosphere improved plant health and yield of banana by offering proper nourishment and protection against diseases.

PubMed

Phirke, Niteen V; Kothari, Raman M; Chincholkar, Sudhir B

2008-12-01

The corporate R&D banana orchards of Musa paradisiaca (dwarf Cavendish AAA, var. shrimanti) on a medium black alluvial soil with low nutrients harboured diversified species of vesicular-arbuscular mycorrhizal (VAM) fungi. These fungi infected the roots severely (69.2%), showed elevated (69.8 g(-1) soil) spore density, increased soil bacterial density (245 x 10(8) cfu g(-1)), produced siderophores (58.2%) and reduced nematode population (2.3 g(-1)) in the mycorrhizosphere of plants for integrated plant nutrition management (IPNM) system as compared to traditional treatment of applying chemical fertilisers alone and other test treatments. The interactions of plant roots with native VAM and local and applied rhizobacteria in the matrix of soil conditioner enabled proper nourishment and protection of crop in IPNM treatment as compared to traditional way. Hence, exploitation of plant growth promoting rhizobacteria through judiciously designed IPNM system revealed the (a) relatively increased banana productivity (21.6%, 76 MT ha(-1)), (b) least occurrence of fusarial wilt and negligible evidence of Sigatoka, (c) saving of 50% chemical fertilisers and (d) permitted control over soil fertility in producer's favour over traditional cultivation practices. These findings are discussed in detail.

Biogeochemistry of fluoride in a plant-solution system

NASA Technical Reports Server (NTRS)

Mackowiak, C. L.; Grossl, P. R.; Bugbee, B. G.

2003-01-01

Fluoride (F-) pollutants can harm plants and the animals feeding on them. However, it is largely unknown how complexing and chelating agents affect F bioavailability. Two studies were conducted that measured F- bioavailability and uptake by rice (Oryza sativa L.). In the first study, rice was grown in solution culture (pH 5.0) with 0, 2, or 4 mM F- as KF to compare the interaction of F- with humic acid (HA) and with a conventional chelating agent, N-hydroxyethylenthylenediaminetriacetic acid (HEDTA). In the second study, F was supplied at 0, 0.5, 1.0, and 2.0 mM KF with an additional 2 mM F- treatment containing solution Ca at 2x (2 mM Ca) the level used in the first study, to test the effect added Ca had on F- availability and uptake. Total biomass was greatest with HEDTA and F- < 1 mM. Leaf and stem F concentrations increased exponentially as solution F- increased linearly, with nearly no F partitioning into the seed. Results suggest that F was taken up as HF0 while F- uptake was likely restricted. Additionally, F- competed with HA for Ca, thus preventing the formation of Ca-HA flocculents. The addition of soluble Ca resulted in the precipitation of CaF2 solids on the root surface, as determined by tissue analysis and energy dispersive X-ray spectroscopy.

Modelling of adaptation processes of crops to water and nitrogen stress

NASA Astrophysics Data System (ADS)

Kovács, Géza J.

In the early 1980s the author published interpretations of his observations on special adaptation processes of crops (“Zichy” experiment). Those days it was not yet possible to include these details into a crop model. The knowledge has grown about the systems of crops and their environment, now it is appropriate to test those hypothesis by systems models. The 4M system model used in this study was developed by RISSAC modelling team lead by the author. 4M is based on CERES model family and the advices of the “father” of CERES, J.T. Ritchie. 4M aims to include a lot of results from Hungarian agricultural research. Some observations of “Zichy” experiment needed explanations but there were shortages of information on some parts of the system in order to test the hypothesis. Observations were as it follows: (1) The growth of above ground maize biomass slowed down in both years after a heavy rainy period. (2) Following the rainy period there was a fast drop of nitrate content in the soil and (3) following this time the water content of soil decreased with a fast rate approaching the wilting point. (4) When maize reacted on the emerging water stress there was a second (and even deeper) slow down of growth of above ground biomass. (5) The consequences of the stormy period was more dramatic in the second year of the experiment (1979), there was 3 t ha -1 loss of biomass and 2.5 t ha -1 loss of grain yield relative to 1978. (6) There was a significant difference in the time of stormy rain: in 1978 it occurred post-anthesis while in 1979 it occurred just prior to anthesis. Hypothesis tested here were as it follows: (1) The cause of observed growth stress reaction was a fast nitrate leaching from the rooted zone. (2) The crops cannot take up all the mineral nitrogen measured in a soil probe, the major limit is the mass flow to the roots controlled by transpiration and nitrogen concentration of soil solution. (3) “Leaching of soil by a flush of rain leads to increased the rate of transpiration in a developed crop stand”. (4) The very well fertilized (“spoiled”) plants had weak root system. In N and water stress the plant changed its carbon distribution to the advantage of root growth, and as a result, the above ground growth slowed down. (5) Pre-anthesis N deficiency had set a limit for later compensation of yield that can be simulated by poor fertilization of grains. New process model components are introduced and tested here as it follows: (1) algorithm for N uptake using the concept of mass flow to the roots controlled by transpiration and nitrogen concentration of soil solution, (2) changes of distribution and redistribution pattern of assimilates to different plant organs influenced by nitrogen and water stress, (3) modification of grain numbers controlled by N stress prior to anthesis. Results showed that hypotheses 1 and 3 was false, hypothesis 2 is true but needs modifications taking the behavior of NH 4 into consideration, hypotheses 4 and 5 are true but more evidences are needed.

Efficacy of various application methods of fluensulfone for managing root-knot nematodes in vegetables

USDA-ARS?s Scientific Manuscript database

Fluensulfone is a new nematicide in the flouroalkenyl chemical group. A field experiment was conducted in 2012 and 2013 to evaluate the efficacy of various application methods of fluensulfone for control of Meloidogyne spp. in cucumber (Cucumis sativus). Treatments of fluensulfone (3.0 kg a.i./ha) ...

The ability of Helianthus annuus L. and Brassica juncea to uptake and translocate natural uranium and 226Ra under different milieu conditions.

PubMed

Vera Tomé, F; Blanco Rodríguez, P; Lozano, J C

2009-01-01

Seedlings of Helianthus annuus L. (HA) and Brassica juncea (BJ) were used to test the effect of the pH, the presence of phosphates, and the addition of ethylene-diamine-tetraacetic acid (EDTA) or citrate on the uptake and the translocation of uranium isotopes ((238)U, (235)U, and (234)U) and (226)Ra. The results indicated that the presence of phosphates generally reduces the uptake and transfer of uranium from the roots to the shoots of HA. In the case of BJ, while phosphate enhanced the retention of uranium by roots, the translocation was poorer. Likewise, for (226)Ra, the best translocation was in the absence of phosphates for both species. The addition of citrate increased the translocation of uranium for both species, but had no clear effect on the transfer of (226)Ra. The effect of EDTA was much more moderate both for uranium and for (226)Ra, and for both plant species. Only noticeable was a slightly better uptake of (226)Ra by BJ at neutral pH, although the translocation was lower.

Aquatic humic substances inhibit clastogenic events in germinating seeds of herbaceous plants.

PubMed

Ferrara, G; Loffredo, E; Senesi, N

2001-03-01

One humic acid (HA) and two fulvic acids (FAs) of aquatic origin have been tested for their capacity to inhibit clastogenic events caused by maleic hydrazide (MH) in germinating seeds of the herbaceous plant species Allium cepa and Vicia faba. Either HA or FA at concentrations of 50 and 500 mg L(-)(1) was interacted with 10 mg L(-)(1) MH for 24 h before addition to the seeds. The evaluation of genotoxic activity was made by counting micronuclei (MN) and aberrant anatelophases (AT) in root tip cells after treatment with HA or FA alone, MH alone, and interacted HA + MH and FA + MH. Regular AT were also counted as an index of mitotic activity. In all cases HA and FA interacted with MH showed an evident anticlastogenic action indicated by the marked reduction of genetic anomalies. In A. cepa, the anticlastogenic effect of HA and FA was more significant for aberrant AT than for MN, whereas the opposite was true in the case of V. faba. The protective effect exhibited for both anomalies by HA was slightly higher than that of the corresponding FA in A. cepa, whereas no significant differences between these HA and FA treatments were observed in the case of V. faba. The two FAs generally showed similar anticlastogenic behaviors with slight quantitative differences observed as a function of the type of anomaly and the plant species. The effects of HA and FA concentration differed depending on the type of anomaly observed, the plant species, and FA origin. In V. faba, cell division, that is, the number of regular AT, was generally depressed by HA and FA at either concentration with respect to the control. In A. cepa, HA and FA produced either stimulating or inhibiting effects on regular AT depending on their nature, origin, and concentration.

Influence of conventional biochar and ageing biochar application to arable soil on soil fertility and plant yield

NASA Astrophysics Data System (ADS)

Dvořáčková, Helena; Záhora, Jaroslav; Elbl, Jakub; Kynický, Jindřich; Hladký, Jan; Brtnický, Martin

2017-04-01

Biochar represents very controversial material which is product of pyrolysis. According to many studies biochar has positive effect on physical and chemical properties such as pH, conductivity, aggregates stability etc. Unfortunately biochar is product of combustion, so it can content toxic substance as are aromatic compound. These substances may have a negative effect on yield and microbial activities in soil. Our aim was eliminated concentration of toxic compound but preserved positive effect of biochar on soil properties. We was ageing/ activating of biochar in water environment and for soil inoculum we used native soil from landscape. Moreover two types of biochar was tested by pot experiment with seven variants, where conventional biochar from residual biomass and ageing biochar were applied in different doses: 10 t/ha, 20t/ha and 50 t/ha. Pots were placed in green house for 90 days and after the end of experiment the following parameters of soil fertility, health and quality were evaluated: content of soil organic matter, arbuscular mycorrhizal colonisation of Lactuca sativa L. roots, leaching of mineral nitrogen, changes in plant available nutrient content, EC and pH. Above all the total yield of indicator plant was observed. The significant (P < 0.05) differences in plant yield and soil properties were found. The application of conventional biochar didn't have positive effect on plant yield in comparison with ageing biochar. The positive effect of ageing biochar addition on soil fertility was directly proportional to the dose which were applied - increasing in dose of ageing biochar resulted in increase of plant yield. Moreover the special experimental containers were used, where we was able to monitor the development of root in soil with and without addition of biochar (conventional or ageing). The positive influence of ageing biochar addition into soil on development of Lactuca sativa L. roots was observed.

From berries to blocks: carbon stock quantification of a California vineyard.

PubMed

Morandé, Jorge Andres; Stockert, Christine M; Liles, Garrett C; Williams, John N; Smart, David R; Viers, Joshua H

2017-12-01

Quantifying terrestrial carbon (C) stocks in vineyards represents an important opportunity for estimating C sequestration in perennial cropping systems. Considering 7.2 M ha are dedicated to winegrape production globally, the potential for annual C capture and storage in this crop is of interest to mitigate greenhouse gas emissions. In this study, we used destructive sampling to measure C stocks in the woody biomass of 15-year-old Cabernet Sauvignon vines from a vineyard in California's northern San Joaquin Valley. We characterize C stocks in terms of allometric variation between biomass fractions of roots, aboveground wood, canes, leaves and fruits, and then test correlations between easy-to-measure variables such as trunk diameter, pruning weights and harvest weight to vine biomass fractions. Carbon stocks at the vineyard block scale were validated from biomass mounds generated during vineyard removal. Total vine C was estimated at 12.3 Mg C ha -1 , of which 8.9 Mg C ha -1 came from perennial vine biomass. Annual biomass was estimated at 1.7 Mg C ha -1 from leaves and canes and 1.7 Mg C ha -1 from fruit. Strong, positive correlations were found between the diameter of the trunk and overall woody C stocks (R 2  = 0.85), pruning weights and leaf and fruit C stocks (R 2  = 0.93), and between fruit weight and annual C stocks (R 2  = 0.96). Vineyard C partitioning obtained in this study provides detailed C storage estimations in order to understand the spatial and temporal distribution of winegrape C. Allometric equations based on simple and practical biomass and biometric measurements could enable winegrape growers to more easily estimate existing and future C stocks by scaling up from berries and vines to vineyard blocks.

Biomechanical effects of trees in a mountain temperate forest: implications for biogeomorphology, soil science, and forest dynamics

NASA Astrophysics Data System (ADS)

Šamonil, Pavel; Daněk, Pavel; Senecká, Anna; Adam, Dušan; Phillips, Jonathan D.

2017-04-01

Biomechanical effects of trees in forest soils represent a potentially significant factor in hillslope processes, pedocomplexity, and forest dynamics. However, these processes have been only rarely studied so far. Within this study we aim (i) to elaborate a detailed and widely applicable methodology of quantification of the main biomechanical effects of trees in soil, (ii) to reveal actual (minimal) frequencies, areas and volumes related to these effects in a mountain temperate old-growth forest. The research took place in the Boubín Primeval Forest in the Czech Republic. The fir-spruce-beech forest reserve belongs among the oldest protected areas in Europe. The reserve occupies NE slopes of an average inclination of about 14˚ on gneiss at an altitude of 930-1110 m a.s.l. We evaluated effects of all standing or lying trees of diameter at breast height (DBH) ≥ 10 cm in an area of 10.2 ha. In total, 4000 trees were studied from viewpoint of following features: treethrow, root mound, bioprotective function of standing as well as lying tree, baumstein, root baumstein, infilling stump, hole after trunk fall, stemwash, trunkwash. Any biomechanical phenomena were recorded in 59% of standing and 51% of lying dead trees (excluding the pervasive soil displacement by thickening trunk and roots and the converse infilling of the space freed during their decay with surrounding soil). Approximately one tenth of the trees expressed simultaneously opposing phenomena such as blocking of slope processes and their intensification. Different tree species and DBH categories exhibited significantly different structure of biomechanical effects in soil. Bioprotective function represented the most frequent process. However, concerning area and volume of affected soil, treethrows were an even more important phenomenon. Total area influenced by the studied biomechanical effects of current generation of trees was 343 m2ha-1. Additional 774 m2ha-1 were occupied by older treethrow pit-mounds with already decayed uprooted trunk. Total volume of soil associated with studied phenomena was 228 m3ha-1, predominated by material affected by treethrows followed by stump infilling. Other processes were not so frequent but still important in forest dynamics, biogeomorphology and soil genesis. We assume significant differences in the structure of biomechanical effects of trees in managed forests.

Application of poultry processing industry waste: a strategy for vegetation growth in degraded soil.

PubMed

do Nascimento, Carla Danielle Vasconcelos; Pontes Filho, Roberto Albuquerque; Artur, Adriana Guirado; Costa, Mirian Cristina Gomes

2015-02-01

The disposal of poultry processing industry waste into the environment without proper care, can cause contamination. Agricultural monitored application is an alternative for disposal, considering its high amount of organic matter and its potential as a soil fertilizer. This study aimed to evaluate the potential of poultry processing industry waste to improve the conditions of a degraded soil from a desertification hotspot, contributing to leguminous tree seedlings growth. The study was carried out under greenhouse conditions in a randomized blocks design and a 4 × 2 factorial scheme with five replicates. The treatments featured four amounts of poultry processing industry waste (D1 = control 0 kg ha(-1); D2 = 1020.41 kg ha(-1); D3 = 2040.82 kg ha(-1); D4 = 4081.63 kg ha(-1)) and two leguminous tree species (Mimosa caesalpiniaefolia Benth and Leucaena leucocephala (Lam.) de Wit). The poultry processing industry waste was composed of poultry blood, grease, excrements and substances from the digestive system. Plant height, biomass production, plant nutrient accumulation and soil organic carbon were measured forty days after waste application. Leguminous tree seedlings growth was increased by waste amounts, especially M. caesalpiniaefolia Benth, with height increment of 29.5 cm for the waste amount of 1625 kg ha(-1), and L. leucocephala (Lam.) de Wit, with maximum height increment of 20 cm for the waste amount of 3814.3 kg ha(-1). M. caesalpiniaefolia Benth had greater initial growth, as well as greater biomass and nutrient accumulation compared with L. leucocephala (Lam.) de Wit. However, belowground biomass was similar between the evaluated species, resulting in higher root/shoot ratio for L. leucocephala (Lam.) de Wit. Soil organic carbon did not show significant response to waste amounts, but it did to leguminous tree seedlings growth, especially L. leucocephala (Lam.) de Wit. Poultry processing industry waste contributes to leguminous tree seedlings growth, indicating that it can be part of a long-term strategy to increase soil organic carbon in degraded soil from a desertification hotspot. Copyright © 2014 Elsevier Ltd. All rights reserved.

Efficacy of Various Application Methods of Fluensulfone for Managing Root-knot Nematodes in Vegetables

PubMed Central

Morris, Kelly A.; Langston, David B.; Davis, Richard F.; Noe, James P.; Dickson, Don W.; Timper, Patricia

2016-01-01

Fluensulfone is a new nematicide in the flouroalkenyl chemical group. A field experiment was conducted in 2012 and 2013 to evaluate the efficacy of various application methods of fluensulfone for control of Meloidogyne spp. in cucumber (Cucumis sativus). Treatments of fluensulfone (3.0 kg a.i./ha) were applied either as preplant incorporation (PPI) or via different drip irrigation methods: drip without pulse irrigation (Drip NP), pulse irrigation 1 hr after treatment (Drip +1P), and treatment at the same time as pulse irrigation (Drip =P). The experiment had eight replications per treatment and also included a PPI treatment of oxamyl (22.5 kg a.i./ha) and a nontreated control. Compared to the control, neither the oxamyl nor the fluensulfone PPI treatments reduced root galling by Meloidogyne spp. in cucumber. Among the drip treatments, Drip NP and Drip +1P reduced root galling compared to the control. Cucumber yield was greater in all fluensulfone treatments than in the control. In a growth-chamber experiment, the systemic activity and phytotoxicity of fluensulfone were also evaluated on tomato (Solanum lycopersicum), eggplant (Solanum melongena), cucumber, and squash (Curcurbita pepo). At the seedling stage, foliage of each crop was sprayed with fluensulfone at 3, 6, and 12 g a.i./liter, oxamyl at 4.8 g a.i./liter, or water (nontreated control). Each plant was inoculated with Meloidogyne incognita juveniles 2 d after treatment. There were six replications per treatment and the experiment was conducted twice. Foliar applications of fluensulfone reduced plant vigor and dry weight of eggplant and tomato, but not cucumber or squash; application of oxamyl had no effect on the vigor or weight of any of the crops. Typically, only the highest rate of fluensulfone was phytotoxic to eggplant and tomato. Tomato was the only crop tested in which there was a reduction in the number of nematodes or galls when fluensulfone or oxamyl was applied to the foliage compared to the nontreated control. This study demonstrates that control of Meloidogyne spp. may be obtained by drip and foliar applications of fluensulfone; however, the systemic activity of fluensulfone is crop specific and there is a risk of phytotoxicity with foliar applications. PMID:27418698

A Multivariate Approach for Comparing and Classifying Streamwater Quality

NASA Astrophysics Data System (ADS)

Hooper, R. P.; McGlynn, B. L.; Hjerdt, K. N.; McDonnell, J. J.

2001-05-01

Few measures exist for objectively comparing the chemistry of streams. We develop a multivariate technique, based on an eigenvalue analysis of streamwater concentrations, to facilitate comparison of water quality among sites across basin scales. A correlation matrix is constructed to include only solutes that mix conservatively. An eigenvalue analysis of this matrix is performed at each site to determine the approximate rank of the data set. If the ranks of all sites are roughly equal, one site is chosen as the reference site. The reduced set of eigenvectors from this site is chosen as the basis for a new, lower dimensional coordinate system and the data from the other sites are projected into this coordinate system. To assess the relative orientation of data from the reference site to all of the other sites, the relative bias (RB) and relative root mean square error (RRMSE) are calculated between the original and the projected points. The new technique was applied to multiple sites within three experimental watersheds to assess the consistency of water quality across the basin scale. The three watersheds were: Panola Mountain, Georgia, USA (6 solutes, 8 sites, 3 to 1000 ha); Sleepers River, Vermont, USA (5 solutes, 7 sites, 3 to 840 ha); and Maimai, South Island, New Zealand (4 solutes, 4 sites, 3 to 300 ha). Data from all sites were roughly planar with the first two eigenvectors explaining more than 90% of the variation. The RRMSEs for the reference site were generally between 5 and 10% with <0.1% RB. At Maimai, the RRMSE was roughly equivalent between the test sites and the 17-ha reference site, 5-8%; the RB was less than 4% at all sites. At Sleepers River, Ca and Mg had larger RRMSE at smaller basins relative to the 41 ha reference site; there was no consistent pattern to the RB for these solutes. Mg, Na, and SiO2 exhibited larger RRMSE (10-20%) and had substantial bias (10%, -20%, and 10%, respectively) at the 840-ha site compared with the 41-ha site. At Panola, only the 17-ha site was similar to the 41-ha reference site in RRMSE and had an RB<10%. The 8-ha site had an RRMSE about twice that of the reference site; Ca exhibited a 20% RB and Mg, -16% RB. All other sites had RRMSEs and RBs greater than 50% for at least one solute. These results indicate that the same set of processes control stream chemistry across a broad range of basin scales at Maimai, but that different processes are expressed at different scales to some extent at Sleepers River and more strongly at Panola Mountain. We hypothesize that this gradient reflects the relatively short residence time in the wetter Maimai basins and the progressively longer residence time in the drier Sleepers River and Panola basins. This new multivariate approach may be a way to objectively sort and classify stream chemistry characteristics from diverse watersheds and across basin scales.

Fertilization, weed control, and pine litter influence loblolly pine stem productivity and root development

Treesearch

James D. Haywood; Allan E. Tiarks; Mary A. Sword

1997-01-01

Following site preparation, three cultural treatments and three open-pollinated loblolly pine (Pinus taeda L.) families were studied on a gently sloping Beauregard silt loam in central Louisiana. The treatments were: (1) fertilization (either broadcast application of 177 kg N and 151 kg P/ha or none); (2) herbicide application (either broadcast...

Empirical and simulated critical loads for nitrogen deposition in California mixed conifer forests

Treesearch

M.E. Fenn; S. Jovan; F. Yuan; L. Geiser; T. Meixner; B.S. Gimeno

2008-01-01

Empirical critical loads (CL) for N deposition were determined from changes in epiphytic lichen communities, elevated NO3 leaching in streamwater, and reduced fine root biomass in ponderosa pine (Pinus ponderosa Dougl. ex Laws.) at sites with varying N deposition. The CL for lichen community impacts of 3.1 kg ha-1 year

Belowground Processes in Nitrogen Fertilized Cottonwood and Loblolly Pine Plantations

Treesearch

Kye-Han Lee; Shibu Jose

2004-01-01

We measured soil respiration, fine root biomass production, and microbial biomass along a fertilization gradient (0, 56, 112, and 224 kg N ha-1 per year) in 7-year-old cottonwood and loblolly pine plantations, established on a well-drained, Redbay sandy loam (a fine-loamy, siliceous, thermic Rhodic Paleudlt), in northwest Florida. Annual soil...

Fall nitrogen fertilization and the biology of Pinus taeda seedling development

Treesearch

Shi-Jean S. Sung; C.C. Black; T.L. Kormanik; P.A. Counce

1997-01-01

In mid-September when stems and roots of nursery-grown loblolly pine (Pinus taeda L.) seedlings are actively accumulating dry weight (DW), an extra 10, 20, or 40 kg NH4NO3 ha-1 (10N, 20N, 4ON) was applied. Seedlings receiving no extra N (0N) were the controls. The temporal patterns...

Histological evaluation of human intrabony periodontal defects treated with an unsintered nanocrystalline hydroxyapatite paste.

PubMed

Horváth, Attila; Stavropoulos, Andreas; Windisch, Péter; Lukács, László; Gera, István; Sculean, Anton

2013-03-01

The aim of the study was to clinically and histologically evaluate the healing of human intrabony defects treated with open flap surgery (OFD) and application of a new, resorbable, fully synthetic, unsintered, nanocrystalline, phase-pure hydroxyapatite (nano-HA). Six patients, each of them displaying very advanced intrabony defects around teeth scheduled for extraction due to advanced chronic periodontitis and further prosthodontic considerations, were included in the study. Following local anaesthesia, mucoperiosteal flaps were reflected; the granulation tissue was removed, and the roots were meticulously debrided by hand and ultrasonic instruments. A notch was placed at the most apical extent of the calculus present on the root surface or at the most apical part of the defect (if no calculus was present) in order to serve as a reference for the histological evaluation. Following defect fill with nano-HA, the flaps were sutured by means of mattress sutures to allow primary intention healing. At 7 months after regenerative surgery, the teeth were extracted together with some of their surrounding soft and hard tissues and processed for histological analysis. The postoperative healing was uneventful in all cases. At 7 months following surgery, mean PPD reduction and mean CAL gain measured 4.0 ± 0.8 and 2.5 ± 0.8 mm, respectively. The histological analysis revealed a healing predominantly characterized by epithelial downgrowth. Limited formation of new cementum with inserting connective tissue fibers and bone regeneration occurred in three out of the six biopsies (i.e. 0-0.86 and 0-1.33 mm, respectively). Complete resorption of the nano-HA was found in four out of the six biopsies. A few remnants of the graft particles (either surrounded by newly formed mineralized tissue or encapsulated in connective tissue) were found in two out of the six biopsies. Within their limits, the present results indicate that nano-HA has limited potential to promote periodontal regeneration in human intrabony defects. The clinical outcomes obtained following surgery with OFD + nano-HA may not reflect true periodontal regeneration.

The architecture of Norway spruce ectomycorrhizae: three-dimensional models of cortical cells, fungal biomass, and interface for potential nutrient exchange.

PubMed

Stögmann, Bernhard; Marth, Andreas; Pernfuß, Barbara; Pöder, Reinhold

2013-08-01

Gathering realistic data on actual fungal biomass in ectomycorrhized fine root systems is still a matter of concern. Thus far, observations on architecture of ectomycorrhizae (ECMs) have been limited to analyses of two-dimensional (2-D) images of tissue sections. This unavoidably causes stereometrical problems that lead to inadequate assumptions about actual size of cells and their arrangement within ECM's functional compartments. Based on extensive morphological investigations of field samples, we modeled the architectural components of an average-sized Norway spruce ECM. In addition to our comprehensive and detailed quantitative data on cell sizes, we studied actual shape and size, in vivo arrangement, and potential nutrient exchange area of plant cortical cells (CCs) using computer-aided three-dimensional (3-D) reconstructions based on semithin serial sections. We extrapolated a factual fungal biomass in ECMs (Hartig net (HN) included) of 1.71 t ha(-1) FW (0.36 t ha(-1) DW) for the top 5 cm of soil for an autochthonous, montane, optimum Norway spruce stand in the Tyrolean Alps. The corresponding potential nutrient exchange area in ECMs including main axes of ECM systems, which is defined as the sum of interfaces between plant CCs and the HN, amounts to at least 3.2 × 10(5) m(2) ha(-1). This is the first study that determines the contribution of the HN to the total fungal biomass in ECMs as well as the quantification of its contact area. Our results may stimulate future research on fungal below-ground processes and their impact on the global carbon cycle.

National Soil Information System in Turkey

NASA Astrophysics Data System (ADS)

Emrah Erdogan, Hakki; Sahin, Mehmet; Sahin, Yuksel

2013-04-01

Land consolidation (LC) represents complexity if management, legal, economic and technical procedures realized in order to adjust the land structure according to actual human preferences and needs. It includes changes in ownership rights to land and other real estate property, exchange of parcels among owners, changes in parcel borders, parcel size and shape, joining and dividing of parcels, changes in land use, construction works as roads, bridges, water changes etc.. Since the subject of LC is agricultural lands, the quality of consolidation depends on the quality of soil data. General Directorate of Agrarian Reform (GDAR) is the responsible institution on land consolidation whole of Turkey. Under GDAR, National Soil Information System (NSIS) has been build up with base soil data in relevant scale (1:5000). NSIS contain detailed information on soil chemical and physical properties, current land use, parent material, land capability class, Storie Index Values. SI were used on land consolidation, land use planning and farm development services. LCC was used for land distribution, rental land; define of village settlement, consolidation, expropriation, reconstruction, reclamation, non-agricultural usage. LCC were also specified to subclasses in four different limited factors as i) flow and erosion risk ii) requirement of drainage and soil moisture iii) Limits of soil tillage and root (shallow soils, low water retention capacity, stony, salty .etc) iv) climatic limits. In this study, digital soil survey and mapping project located in Yumurtalik, Adana is presented as an example of NSIS data structure. The project cover an area of 45709 ha that include crop lands as an area of 28528 ha and other land use (urban, roads..etc) as an area of 17181 ha. Soil profiles were described in 45 different points and totally 1279 soil samples were collected in field study and the check bore hole were made in 3170 points.

Targeted delivery of hyaluronic acid to the ocular surface by a polymer-peptide conjugate system for dry eye disease.

PubMed

Lee, David; Lu, Qiaozhi; Sommerfeld, Sven D; Chan, Amanda; Menon, Nikhil G; Schmidt, Tannin A; Elisseeff, Jennifer H; Singh, Anirudha

2017-06-01

Hyaluronic acid (HA) solutions effectively lubricate the ocular surface and are used for the relief of dry eye related symptoms. However, HA undergoes rapid clearance due to limited adhesion, which necessitates frequent instillation. Conversely, highly viscous artificial tear formulations with HA blur vision and interfere with blinking. Here, we developed an HA-eye drop formulation that selectively binds and retains HA for extended periods of time on the ocular surface. We synthesized a heterobifunctional polymer-peptide system with one end binding HA while the other end binding either sialic acid-containing glycosylated transmembrane molecules on the ocular surface epithelium, or type I collagen molecule within the tissue matrix. HA solution was mixed with the polymer-peptide system and tested on both ex vivo and in vivo models to determine its ability to prolong HA retention. Furthermore, rabbit ocular surface tissues treated with binding peptides and HA solutions demonstrated superior lubrication with reduced kinetic friction coefficients compared to tissues treated with conventional HA solution. The results suggest that binding peptide-based solution can keep the ocular surface enriched with HA for prolonged times as well as keep it lubricated. Therefore, this system can be further developed into a more effective treatment for dry eye patients than a standard HA eye drop. Eye drop formulations containing HA are widely used to lubricate the ocular surface and relieve dry eye related symptoms, however its low residence time remains a challenge. We designed a polymer-peptide system for the targeted delivery of HA to the ocular surface using sialic acid or type I collagen as anchors for HA immobilization. The addition of the polymer-peptide system to HA eye drop exhibited a reduced friction coefficient, and it can keep the ocular surface enriched with HA for prolonged time. This system can be further developed into a more effective treatment for dry eye than a standard HA eye drop. Copyright © 2017 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Molecular cloning, phylogenetic analysis, and expression patterns of LATERAL SUPPRESSOR-LIKE and REGULATOR OF AXILLARY MERISTEM FORMATION-LIKE genes in sunflower (Helianthus annuus L.).

PubMed

Fambrini, Marco; Salvini, Mariangela; Pugliesi, Claudio

2017-03-01

The wild sunflower (Helianthus annuus) plants develop a highly branched form with numerous small flowering heads. The origin of a no branched sunflower, producing a single large head, has been a key event in the domestication process of this species. The interaction between hormonal factors and several genes organizes the initiation and outgrowth of axillary meristems (AMs). From sunflower, we have isolated two genes putatively involved in this process, LATERAL SUPPRESSOR (LS)-LIKE (Ha-LSL) and REGULATOR OF AXILLARY MERISTEM FORMATION (ROX)-LIKE (Ha-ROXL), encoding for a GRAS and a bHLH transcription factor (TF), respectively. Typical amino acid residues and phylogenetic analyses suggest that Ha-LSL and Ha-ROXL are the orthologs of the branching regulator LS and ROX/LAX1, involved in the growth habit of both dicot and monocot species. qRT-PCR analyses revealed a high accumulation of Ha-LSL transcripts in roots, vegetative shoots, and inflorescence shoots. By contrast, in internodal stems and young leaves, a lower amount of Ha-LSL transcripts was observed. A comparison of transcription patterns between Ha-LSL and Ha-ROXL revealed some analogies but also remarkable differences; in fact, the gene Ha-ROXL displayed a low expression level in all organs analyzed. In situ hybridization (ISH) analysis showed that Ha-ROXL transcription was strongly restricted to a small domain within the boundary zone separating the shoot apical meristem (SAM) and the leaf primordia and in restricted regions of the inflorescence meristem, beforehand the separation of floral bracts from disc flower primordia. These results suggested that Ha-ROXL may be involved to establish a cell niche for the initiation of AMs as well as flower primordia. The accumulation of Ha-LSL transcripts was not restricted to the boundary zones in vegetative and inflorescence shoots, but the mRNA activity was expanded in other cellular domains of primary shoot apical meristem as well as AMs. In addition, Ha-LSL transcript accumulation was also detected in leaves and floral primordia at early stages of development. These results were corroborated by qRT-PCR analyses that evidenced high levels of Ha-LSL transcripts in very young leaves and disc flowers, suggesting a role of Ha-LSL for the early outgrowth of lateral primordia.

Ecological role of the giant root-rat (Tachyoryctes macrocephalus) in the Afroalpine ecosystem.

PubMed

Šklíba, Jan; Vlasatá, Tereza; Lövy, Matěj; Hrouzková, Ema; Meheretu, Yonas; Sillero-Zubiri, Claudio; Šumbera, Radim

2017-07-01

Rodents with prevailing subterranean activity usually play an important role in the ecosystems of which they are a part due to the combined effect of herbivory and soil perturbation. This is the case for the giant root-rat Tachyoryctes macrocephalus endemic to the Afroalpine ecosystem of the Bale Mountains, Ethiopia. We studied the impact of root-rats on various ecosystem features within a 3.5-ha study locality dominated by Alchemilla pasture, which represents an optimal habitat for this species, in 2 periods of a year. The root-rats altered plant species composition, reducing the dominant forb, Alchemilla abyssinica, while enhancing Salvia merjame and a few other species, and reduced vegetation cover, but not the fresh plant biomass. Where burrows were abandoned by root-rats, other rodents took them over and A. abyssinica increased again. Root-rat burrowing created small-scale heterogeneity in soil compactness due to the backfilling of some unused burrow segments. Less compacted soil tended to be rich in nutrients, including carbon, nitrogen and phosphorus, which likely affected the plant growth on sites where the vegetation has been reduced as a result of root-rat foraging and burrowing. © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

Ecophysiological differences in tree carbon gain and water use for two fast growing loblolly pine ideotypes that differ in carbon allocation

NASA Astrophysics Data System (ADS)

Maier, C. A.; Johnsen, K. H.; Dougherty, P.; Albaugh, T.; Patterson, S.

2013-12-01

We examined the ecophysiological basis for differences in growth efficiency and water-use for two contrasting Pinus taeda (L.) ideotypes: a ';broad-crown' (BC) and a ';narrow crown' (NC) clone, which allocate more growth to leaves and wood, respectively. Tree growth, above and belowground biomass production, fine root turnover, light use efficiency (LUE), and transpiration on a ground (Et) and leaf (EL) basis were measured periodically over eight years. Silviculture treatments were a control consisting of shearing and bedding following local commercial operations and a mulch treatment where chipped logging residue (C/N≈700) was incorporated into the soil during bedding at a rate of 25 Mg ha-1. We hypothesized that: 1) the NC and BC clone would display similar aboveground productivity in the control treatment, but because of lower leaf area and thus lower nitrogen demand, the NC would display higher productivity than BC on the mulch treatment, 2) the NC would have higher LUE, and 3) the NC clone would have lower Et and EL. There were no treatment, clone, or interaction effects on stemwood production. At age eight, standing stem biomass was 80.7 and 86.0 Mg ha-1 (p=0.33), for the NC and BC, respectively. However, there were significant clone effects on carbon allocation. The BC had greater foliage (BC: 8.1, NC: 6.6 Mg ha-1, se=0.2, p=0.01) and branch (BC: 15.0, NC: 12.4 Mg ha-1, se=0.4, p<0.001) biomass, while the NC clone had greater taproot (BC: 14.8, NC: 17.1, Mg ha-1, se=0.4, p=0.003) and coarse root (>2mm) (BC: 9.7, NC: 11.23 Mg ha-1, se=0.2, P<0.001) biomass. In addition, the NC clone averaged on a monthly basis 30% more fine root biomass (<2mm) (BC: 42.4, NC: 61.0 g m-2, se=4.0, p=0.011). The BC clone had 16% more LAI (BC: 3.52×0.12, NC: 2.94×0.14 m2 m-2) at peak foliage biomass and had more leaf area to conducting sapwood area (AL/AS) (BC: 0.175 m2 cm-2, NC: 0.150 m2 cm-2) than the NC clone. Growth efficiency, defined as annual stem increment per unit leaf area was 5.36 and 4.70 Mg ha-1 yr-1 LAI-1 in the NC and BC, respectively (p<0.0001). There were no clone differences in LUE (NC: 1.41, BC 1.35 g MJ-1, p=0.48). Et of the BC clone was 22% (403 mm year-1) greater than the NC (315 mm year-1); however, most of this difference was due to greater water use by the BC clone during the winter and spring. There were no differences in Et during the summer months. For example, EL averaged 1.03×0.07 and 0.69×0.04 mm day-1 in March compared to 0.72×.07 and 0.61×0.05 mm day-1in August for the BC and NC, respectively. Our results show that the contrasting ideotypes had similar stem biomass production, but the NC ideotype produced more stemwood per unit leaf area, which confers greater nutrient use efficiency. In addition, the NC had significantly greater belowground carbon allocation, which could have long-term implications for soil carbon sequestration.

Estimates of future inundation of salt marshes in response to sea-level rise in and around Acadia National Park, Maine

USGS Publications Warehouse

Nielsen, Martha G.; Dudley, Robert W.

2013-01-01

Salt marshes are ecosystems that provide many important ecological functions in the Gulf of Maine. The U.S. Geological Survey investigated salt marshes in and around Acadia National Park from Penobscot Bay to the Schoodic Peninsula to map the potential for landward migration of marshes using a static inundation model of a sea-level rise scenario of 60 centimeters (cm; 2 feet). The resulting inundation contours can be used by resource managers to proactively adapt to sea-level rise by identifying and targeting low-lying coastal areas adjacent to salt marshes for conservation or further investigation, and to identify risks to infrastructure in the coastal zone. For this study, the mapping of static inundation was based on digital elevation models derived from light detection and ranging (LiDAR) topographic data collected in October 2010. Land-surveyed control points were used to evaluate the accuracy of the LiDAR data in the study area, yielding a root mean square error of 11.3 cm. An independent accuracy assessment of the LiDAR data specific to salt-marsh land surfaces indicated a root mean square error of 13.3 cm and 95-percent confidence interval of ± 26.0 cm. LiDAR-derived digital elevation models and digital color aerial photography, taken during low tide conditions in 2008, with a pixel resolution of 0.5 meters, were used to identify the highest elevation of the land surface at each salt marsh in the study area. Inundation contours for 60-cm of sea-level rise were delineated above the highest marsh elevation for each marsh. Confidence interval contours (95-percent,± 26.0 cm) were delineated above and below the 60-cm inundation contours, and artificial structures, such as roads and bridges, that may present barriers to salt-marsh migration were mapped. This study delineated 114 salt marshes totaling 340 hectares (ha), ranging in size from 0.11 ha (marshes less than 0.2 ha were mapped only if they were on Acadia National Park property) to 52 ha, with a median size of 1.0 ha. Inundation contours were mapped at 110 salt marshes. Approximately 350 ha of low-lying upland areas adjacent to these marshes will be inundated with 60 cm of sea-level rise. Many of these areas are currently freshwater wetlands. There are potential barriers to marsh migration at 27 of the 114 marshes. Although only 23 percent of the salt marshes in the study are on ANP property, about half of the upland areas that will be inundated are within ANP; most of the predicted inundated uplands (approximately 170 ha) include freshwater wetlands in the Northeast Creek and Bass Harbor Marsh areas. Most of the salt marshes analyzed do not have a significant amount of upland area available for migration. Seventy-five percent of the salt marshes have 20 meters or less of adjacent upland that would be inundated along most of their edges. All inundation contours, salt marsh locations, potential barriers, and survey data are stored in geospatial files for use in a geographic information system and are a part of this report.

Bioagents and silicon promoting fast early upland rice growth.

PubMed

de Sousa, Thatyane Pereira; de Souza, Alan Carlos Alves; de Filippi, Marta Cristina Corsi; Lanna, Anna Cristina; Cortês, Marcio Vinicius; Pinheiro, Hugo Alves; da Silva, Gisele Barata

2018-02-01

Upland rice can overcome major challenges through the insertion of silicate fertilization and the presence of plant growth-promoting microorganisms (PGPMs) during its cultivation, as these factors promote an increase in vigor and plant disease resistance. Two consecutive experiments were conducted to evaluate the beneficial effects of silicon fertilization combined with the PGPM, Pseudomonas fluorensces, Burkholderia pyrrocinia, and a pool of Trichoderma asperellum, in upland rice seedlings, cultivar BRS Primavera CL: (a) E1, selecting PGPM type and Si doses for rice growth promotion and leaf blast supression, and (b) E2, evaluating physiological characteristics correlated with mechanisms involved in the higher vegetative growth in highlighted treatments from E1. In E1, 2 Si t ha -1 combined with the application of T. asperellum pool or PGPM mixture increased 54% in root dry matter biomass and 35 and 65% in shoot and root lengths, respectively; it also suppressed 99% of rice blast severity. In E2, shoot and root dry matter biomass and length, photosynthetic rate, water use efficiency, total soluble sugar, and chloroplastidic pigments were superior in BRS Primavera CL seedlings treated with 2 Si t ha -1 and T. asperellum pool or PGPM mixture. Higher salicilic and jasmonic acid levels were found in seedlings treated with Si and T. asperellum pool, individually. These physiological characteristics may explain, in part, the higher vigor of upland rice seedlings promoted by the synergistic effect between silicate fertilization and beneficial microorganisms.

Annual methane budgets of sheep grazing systems were regulated by grazing intensities in the temperate continental steppe: A two-year case study

NASA Astrophysics Data System (ADS)

Ma, Lei; Zhong, Mengying; Zhu, Yuhao; Yang, Helong; Johnson, Douglas A.; Rong, Yuping

2018-02-01

Methane (CH4) emission from animal husbandry accounts for a large percentage of anthropogenic contributions to CH4 emissions. Fully understanding of grazing management effects on the CH4 budget is essential for mitigating CH4 emissions in the temperate grazing steppe systems. Annual CH4 budgets for the sheep grazed steppes at various grazing intensities, un-grazing (UG, 0 sheep ha-1year-1), defer grazing (DG, 1.0 sheep ha-1 year-1), moderate grazing (MG, 1.43 sheep ha-1year-1), and heavy grazing (HG, 2.43 sheep ha-1year-1) were assessed across 2012-2014 in the agro-pastoral region of northern China. Annual soil CH4 uptake averaged across 2012-2014 were 1.1 ± 0.1, 2.4 ± 0.2, 2.2 ± 0.2, and 1.3 ± 0.1 kg CH4-C ha-1 for UG, DG (only 2013-2014), MG and HG sites. Non-growing season CH4 uptake comprised 50.0 ± 4.3% of annual CH4 uptake in 2012-2013 and 37.7 ± 2.0% in 2013-2014. DG and MG significantly promoted annual soil CH4 uptake (P < 0.05), while there was no difference between HG and UG (P > 0.05). Bell-shaped relationship was presented between stocking rates and soil CH4 uptake (r2 = 0.59, P < 0.05). Annual soil CH4 uptake significant linearly and positively correlated with root biomass (r2 = 0.30, P < 0.05). Annual CH4 budgets for the grazed grasslands were -1.1 ± 0.1, 5.7 ± 0.6, 11.5 ± 1.5 and 15.5 ± 1.3 kg CH4-C ha-1 year-1 in UG, DG (only 2013-2014), MG and HG across 2012-2014. Soil CH4 uptake could offset 29.7 ± 5.6, 15.9 ± 4.3 and 6.8 ± 1.0% of total annual CH4 emissions from sheep, sheepfold and faeces in DG, MG, and HG. All grazed steppes are sources for atmospheric CH4 and the magnitude is regulated by grazing intensities. Sheep CH4 emissions for 1-g liveweight gain were 0.21, 0.32 and 0.37 g CH4-C in DG, MG and HG, respectively. DG is the recommended grazing management in this region to achieve greater herbage mass, higher sheep performance and lower CH4 emissions simultaneously.

Regulation and roles of the hyaluronan system in mammalian reproduction.

PubMed

Fouladi-Nashta, Ali A; Raheem, Kabir A; Marei, Waleed F; Ghafari, Fataneh; Hartshorne, Geraldine M

2017-02-01

Hyaluronan (HA) is a non-sulphated glycosaminoglycan polymer naturally occurring in many tissues and fluids of mammals, including the reproductive system. Its biosynthesis by HA synthase (HAS1-3) and catabolism by hyaluronidases (HYALs) are affected by ovarian steroid hormones. Depending upon its molecular size, HA functions both as a structural component of tissues in the form of high-molecular-weight HA or as a signalling molecule in the form of small HA molecules or HA fragments with effects mediated through interaction with its specific cell-membrane receptors. HA is produced by oocytes and embryos and in various segments of the reproductive system. This review provides information about the expression and function of members of the HA system, including HAS, HYALs and HA receptors. We examine their role in various processes from folliculogenesis through oocyte maturation, fertilisation and early embryo development, to pregnancy and cervical dilation, as well as its application in assisted reproduction technologies. Particular emphasis has been placed upon the role of the HA system in pre-implantation embryo development and embryo implantation, for which we propose a hypothetical sequential model. © 2017 Society for Reproduction and Fertility.

Biomass Retrieval from L-Band Polarimetric UAVSAR Backscatter and PRISM Stereo Imagery

NASA Technical Reports Server (NTRS)

Zhang, Zhiyu; Ni, Wenjian; Sun, Guoqing; Huang, Wenli; Ranson, Kenneth J.; Cook, Bruce D.; Guo, Zhifeng

2017-01-01

The forest above-ground biomass (AGB) and spatial distribution of vegetation elements have profound effects on the productivity and biodiversity of terrestrial ecosystems. In this paper, we evaluated biomass estimation from L-band Synthetic Aperture Radar (SAR) data acquired by National Aeronautics and Space Administration (NASA) Uninhabited Aerial Vehicle SAR (UAVSAR) and the improvement of accuracy by adding canopy height information derived from stereo imagery acquired by Japan Aerospace Exploration Agency (JAXA) Panchromatic Remote Sensing Instrument for Stereo Mapping (PRISM) on-board the Advanced Land Observing Satellite (ALOS). Various models for prediction of forest biomass from UAVSAR data were investigated at pixel sizes of 1/4 ha (50 m x 50 m) and 1 ha. The variance inflation factor (VIF) was calculated for each of the explanatory variables in multivariable regression models to assess the multi-collinearity between explanatory variables. In addition, the t-and p-values were used to interpret the significance of the coefficients of each explanatory variables. The R(exp. 2), Root Mean Square Error (RMSE), bias and Akaike information criterion (AIC), and leave-one-out cross-validation (LOOCV) and bootstrapping were used to validate models. At 1/4-ha scale, the R(exp. 2) and RMSE of biomass estimation from a model using a single track of polarimetric UAVSAR data were 0.59 and 52.08 Mg/ha. With canopy height from PRISM as additional independent variable, R(exp. 2) increased to 0.76 and RMSE decreased to 39.74 Mg/ha (28.24%). At 1-ha scale, the RMSE of biomass estimation based on UAVSAR data of a single track was 39.42 Mg/ha with a R(exp. 2) of 0.77. With the canopy height from PRISM, R(exp. 2) increased to 0.86 and RMSE decreased to 29.47 Mg/ha (20.18%). The models using UAVSAR data alone underestimated biomass at levels above approximately 150 Mg/ha showing the saturation phenomenon. Adding canopy height from PRISM stereo imagery significantly improved the biomass estimation and elevated the saturation level in estimating biomass. Combined use of UAVSAR data acquired from opposite directions (odd and even tracks) slightly improved the biomass estimation.Combined use of UAVSAR data acquired from opposite directions (odd and even tracks) slightly improved the biomass estimation at 1/4-ha scale, R(exp. 2) increased from 0.59 to 0.66 and RMSE reduced from 52.08 to 48.57 Mg/ha. Averaging multiple acquisitions of UAVSAR data from the same look azimuth direction did not improve biomass estimation. A biomass map derived from NASA's LVIS (Laser Vegetation Imaging System) wave-form data was used as a reference for evaluation of the biomass maps from these models. The study has also shown that the errors decreased when deciduous, evergreen, and mixed forests were modeled separately but the improvement was not significant

Animal responses to herbage allowance: Forage intake and body weight gain of sheep grazing the Inner Mongolian steppe - Results of a six-year study.

PubMed

Dickhoefer, U; Bösing, B M; Hasler, M; Hao, J; Lin, L; Müller, K; Wang, C; Glindemann, T; Tas, B; Gierus, M; Taube, F; Susenbeth, A

2016-05-01

An increasing human population and the growing demand for food of animal origin are leading to an intensification of sheep production and widespread overgrazing of the grassland steppe in Inner Mongolia. The aim of this study was to analyze the effect of herbage allowance (HA) on OM intake (OMI) and BW gain (BWG) of grazing sheep. In July to September 2005 to 2010, a grazing experiment was conducted in the Xilin River Basin using 15-mo-old female Mongolian fat-tailed sheep (31.5 kg BW [SE 0.2]). Six HA classes were tested on 4 experimental plots per HA class that were alternately used for grazing and haymaking each year (i.e., = 2 grazed plots per HA class and year). Mean HA ranged from 15.4 (SD 4.0) to 1.5 kg (SD 0.8) herbage DM/kg BW in HA class 1 to 6, respectively. In 6 sheep per plot (4 sheep in 2009 and 2010), OMI and BWG were determined. Titanium dioxide was used to determine fecal excretion, and digestibility of ingested OM was estimated from CP concentration in feces. Fecal grab samples were collected during 5 d each in July, August, and September. The animals were weighed monthly. Daily OMI of sheep ranged between 68 and 89 g/kg BW and was not affected by HA class ( = 0.373), so that total OMI per hectare was exponentially decreased with increasing HA (root mean square error [RMSE] ≤ 0.31 g/d; ≤ 0.003 for the slope estimates). The BWG of individual sheep increased with increasing HA in 2 of the 6 yr (RMSE 18.4 g/d; ≤ 0.175 for the positive slope estimates). Nevertheless, BWG per hectare strongly decreased with increasing HA (RMSE 0.25 g/d; ≤ 0.006 for the slope estimates). These data support the common practice of farmers to manage the grassland at low HA to allow for greater animal performance per unit of land area.

Effects of Organic Acids and Sylvite on Phytoextraction of 241Am Contaminated Soil.

PubMed

Wang, Ping; Du, Liang; Tan, Zhaoyi; Su, Rongbo; Li, Taowen

2017-03-01

Contamination of soil with Americium ( 241 Am) at nuclear sites in China poses a serious problem. We screened six plants, from five families, for their 241 Am-enrichment potential. Europium (Eu), which is morphologically and chemically similar to the highly toxic 241 Am, was used in its place. Moreover, the effects of sylvite, citric acid (CA), malic acid (MA), and humic acid (HA) on the absorption of 241 Am by the plants, and its transport within them, were evaluated along with their effect on plant biomass and 241 Am extraction volume. Barley and cabbage showed relatively stronger Eu accumulation capacities. Citric acid promoted the absorption of 241 Am by barley roots and its transport within the plants. The effects of sylvite were not obvious and those of HA were the weakest in case of sunflower; HA, however, maximally increased the biomass of the plants. Our results could provide the basis for future radionuclide phytoremediation of contaminated soils.

Changes in fine-root production, phenology and spatial distribution in response to N application in irrigated sweet cherry trees.

PubMed

Artacho, Pamela; Bonomelli, Claudia

2016-05-01

Factors regulating fine-root growth are poorly understood, particularly in fruit tree species. In this context, the effects of N addition on the temporal and spatial distribution of fine-root growth and on the fine-root turnover were assessed in irrigated sweet cherry trees. The influence of other exogenous and endogenous factors was also examined. The rhizotron technique was used to measure the length-based fine-root growth in trees fertilized at two N rates (0 and 60 kg ha(-1)), and the above-ground growth, leaf net assimilation, and air and soil variables were simultaneously monitored. N fertilization exerted a basal effect throughout the season, changing the magnitude, temporal patterns and spatial distribution of fine-root production and mortality. Specifically, N addition enhanced the total fine-root production by increasing rates and extending the production period. On average, N-fertilized trees had a length-based production that was 110-180% higher than in control trees, depending on growing season. Mortality was proportional to production, but turnover rates were inconsistently affected. Root production and mortality was homogeneously distributed in the soil profile of N-fertilized trees while control trees had 70-80% of the total fine-root production and mortality concentrated below 50 cm depth. Root mortality rates were associated with soil temperature and water content. In contrast, root production rates were primarily under endogenous control, specifically through source-sink relationships, which in turn were affected by N supply through changes in leaf photosynthetic level. Therefore, exogenous and endogenous factors interacted to control the fine-root dynamics of irrigated sweet cherry trees. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Effect of Long-Term 1093 K Exposure to Air or Vacuum on the Structure of Several Wrought Superalloys

NASA Technical Reports Server (NTRS)

Whittenberger, J. D.

1993-01-01

Long-term 1093 K heat treatments of three commercial superalloy sheet materials were undertaken in air -IAI and vacuum. With either exposure, significant precipitation of second phases occurred in the Co-base Haynes(R) Alloy 188 (HA 188) and the Ni-base Haynes(R) Alloy 230 (HA 230); however, much less precipitation was found in the exposed Ni-base alloy Inconel(R) 617 (IN 617). Although some grain growth occurred in HA 198, no changes in the grain size of either HA 230 or IN 617 were observed after 22,500 h at temperature. Oxidation during air heat treatments led to weight gain due to the formation of chromia + spinel scales and surface-connected grain boundary pits/oxides in all three superalloys. Both the weight gain and depth of intergranular attack were dependent on the square root of time, which is indicative of diffusion-controlled phenomena. Because many alloy samples had neighbors in close proximity, most vacuum heat treated specimens did not suffer significant loss of volatile elements. However, some exposed samples were subjected to unrestricted vacuum heat treatments, allowing estimates of volatilization to be made. Based on the data for HA 188, the weight loss during 1093 K vacuum exposure was diffusion controlled once the inhibiting effects of surface films on the as-received alloys were broken down.

Effect of Long-Term 1093 K Exposure to Air or Vacuum on the Structure of Several Wrought Superalloys

NASA Astrophysics Data System (ADS)

Whittenberger, J. D.

1993-10-01

Long-term 1093 K heat treatments of three commercial superalloy sheet materials were undertaken in air and vacuum. With either exposure, significant precipitation of second phases occurred in the Co-base Haynes® Alloy 188 (HA 188) and the Ni-base Haynes® Alloy 230 (HA 230); however, much less precipitation was found in the exposed Ni-base alloy Inconel® 617 (IN 617). Although some grain growth occurred in HA 188, no changes in the grain size of either HA 230 or IN 617 were observed after 22,500 h at temperature. Oxidation during air heat treatments led to weight gain due to the formation of chromia + spinel scales and surface-connected grain boundary pits/oxides in all three superalloys. Both the weight gain and depth of intergranular attack were dependent on the square root of time, which is indicative of diffusion-controlled phenomena. Because many alloy samples had neighbors in close proximity, dmost vacuum heat treated specimens did not suffer significant loss of volatile elements. However, some exposed samples were subjected to unrestricted vacuum heat treatments, allowing estimates of volatilization to be made. Based on the data for HA 188, the weight loss during 1093 K vacuum exposure was diffusion controlled once the inhibiting effects of surface films on the as-received alloys were broken down.

The legacy of forest harvest and burning on ecosystem carbon storage in the northern midwest, USA

NASA Astrophysics Data System (ADS)

Gough, C. M.; Vogel, C. S.; Harrold, K. H.; George, K. D.; Curtis, P. S.

2005-12-01

Over 90 % of the forested area in the upper Great Lakes region was harvested by the early 20th century. In many cases, harvests were followed by uncontrolled burns, similar to current patterns of disturbance in many developing countries. While afforestation in the northern midwest has resulted in increased regional carbon (C) storage, the rate of C storage by forests will depend on the severity of prior disturbance and consequent changes in site quality. We were interested in how long the legacy of poor management practices from the early 20th century would be reflected in forest C storage rates. We investigated C cycling and storage following disturbance in mixed deciduous forests of northern lower Michigan, USA. Study plots ranged in age from 6 to 68 yrs and were created following experimental clear-cut harvesting and fire disturbance. Annual C storage was estimated biometrically from measurements of wood, leaf, fine root, and woody debris mass, mass losses to herbivory, soil carbon content, and soil respiration. Maximum annual carbon storage, or net ecosystem production (NEP), in the disturbed stands was 50 % lower than that of adjacent, undisturbed forest. This decrease was caused by a reduction in site quality following disturbance. However, during regrowth the cut and burned forest rapidly became a net C sink, storing 0.86 Mg C ha-1 yr-1 after six yrs. Carbon storage reached a peak of 1.00 Mg C ha-1 yr-1 after 50 yrs and declined to 0.57 Mg C ha-1 yr-1 after 68 yrs. Above- and below-ground net primary production (NPP) averaged 42 and 59 % of total NPP, respectively, with fine root litter production accounting for 57 % of total NPP. Soil heterotrophic respiration was high, ranging from 4.55 Mg C ha-1 yr-1 in the 6-yr-old stand to 5.74 Mg C ha-1 yr-1 in the 50-yr-old stand. Soil C and coarse woody debris pools exhibited a U-shaped trend over time following disturbance. Mineral soil and coarse woody debris pools lost C at a combined annual rate of 1.10 Mg C ha-1 yr-1 in the 6-yr-old stand, but these pools accrued C at a rate of 0.30 Mg C ha--1 yr-1 in the 68-yr-old stand. Detritus inputs augmented soil C six years after harvest and this legacy C persisted in the oldest, 68-yr-old stand. This resulted in higher soil C than in an adjacent undisturbed mature forest. These results demonstrate that lasting decreases in site quality following disturbance result in long-term reductions in forest C storage.

The Effect of Sex on Heart Rate Variability at High Altitude.

PubMed

Boos, Christopher John; Vincent, Emma; Mellor, Adrian; O'Hara, John; Newman, Caroline; Cruttenden, Richard; Scott, Phylip; Cooke, Mark; Matu, Jamie; Woods, David Richard

2017-12-01

There is evidence suggesting that high altitude (HA) exposure leads to a fall in heart rate variability (HRV) that is linked to the development of acute mountain sickness (AMS). The effects of sex on changes in HRV at HA and its relationship to AMS are unknown. HRV (5-min single-lead ECG) was measured in 63 healthy adults (41 men and 22 women) 18-56 yr of age at sea level (SL) and during a HA trek at 3619, 4600, and 5140 m, respectively. The main effects of altitude (SL, 3619 m, 4600 m, and 5140 m) and sex (men vs women) and their potential interaction were assessed using a factorial repeated-measures ANOVA. Logistic regression analyses were performed to assess the ability of HRV to predict AMS. Men and women were of similar age (31.2 ± 9.3 vs 31.7 ± 7.5 yr), ethnicity, and body and mass index. There was main effect for altitude on heart rate, SD of normal-to-normal (NN) intervals (SDNN), root mean square of successive differences (RMSSD), number of pairs of successive NN differing by >50 ms (NN50), NN50/total number of NN, very low-frequency power, low-frequency (LF) power, high-frequency (HF) power, and total power (TP). The most consistent effect on post hoc analysis was reduction in these HRV measures between 3619 and 5140 m at HA. Heart rate was significantly lower and SDNN, RMSSD, LF power, HF power, and TP were higher in men compared with women at HA. There was no interaction between sex and altitude for any of the HRV indices measured. HRV was not predictive of AMS development. Increasing HA leads to a reduction in HRV. Significant differences between men and women emerge at HA. HRV was not predictive of AMS.

Effects of seabird nitrogen input on biomass and carbon accumulation after 50 years of primary succession on a young volcanic island, Surtsey

NASA Astrophysics Data System (ADS)

Leblans, N. I. W.; Sigurdsson, B. D.; Roefs, P.; Thuys, R.; Magnússon, B.; Janssens, I. A.

2014-11-01

What happens during primary succession after the first colonizers have occupied a pristine surface largely depends on how they ameliorate living conditions for other species. For vascular plants the onset of soil development and associated increase in nutrient (mainly nitrogen; N) and water availability is especially important. Here, we report the relationship between N accumulation and biomass and ecosystem carbon (C) stocks in a 50-year-old volcanic island, Surtsey, Iceland, where N stocks are still exceptionally low. However, a 28-year-old seagull colony on the island provided nutrient-enriched areas, which enabled us to assess the relationship between N stock and biomass and ecosystem C stocks across a much larger range in N stock. Further, we compared areas on shallow and deep tephra sands as we expected that deep-rooted systems would be more efficient in retaining N. The sparsely vegetated area outside the colony had accumulated 0.7 kg N ha-1 yr-1, which was ca. 50-60% of the estimated N input rate from wet deposition. This approximates values for systems under low N input and bare dune habitats. The seagulls have added, on average, 47 kg N ha-1 yr-1, which induced a shift from belowground to aboveground in ecosystem N and C stocks and doubled the ecosystem N-use efficiency, determined as the ratio of biomass and C storage per unit N input. Soil depth did not significantly affect total N stocks, which suggests a high N retention potential. Both total ecosystem biomass and C stocks were strongly correlated with N stock inside the colony, which indicated the important role of N during the first steps of primary succession. Inside the colony, the ecosystem biomass C stocks (17-27 ton C ha-1) had reached normal values for grasslands, while the soil organic carbon (SOC) stocks (4-10 ton C ha-1 were only a fraction of normal grassland values. Thus, it will take a long time until the SOC stock reaches equilibrium with the current primary production, during which conditions for new colonists may change.

Dryland soil hydrological processes and their impacts on the nitrogen balance in a soil-maize system of a freeze-thawing agricultural area.

PubMed

Ouyang, Wei; Chen, Siyang; Cai, Guanqing; Hao, Fanghua

2014-01-01

Understanding the fates of soil hydrological processes and nitrogen (N) is essential for optimizing the water and N in a dryland crop system with the goal of obtaining a maximum yield. Few investigations have addressed the dynamics of dryland N and its association with the soil hydrological process in a freeze-thawing agricultural area. With the daily monitoring of soil water content and acquisition rates at 15, 30, 60 and 90 cm depths, the soil hydrological process with the influence of rainfall was identified. The temporal-vertical soil water storage analysis indicated the local albic soil texture provided a stable soil water condition for maize growth with the rainfall as the only water source. Soil storage water averages at 0-20, 20-40 and 40-60 cm were observed to be 490.2, 593.8, and 358 m3 ha-1, respectively, during the growing season. The evapo-transpiration (ET), rainfall, and water loss analysis demonstrated that these factors increased in same temporal pattern and provided necessary water conditions for maize growth in a short period. The dry weight and N concentration of maize organs (root, leaf, stem, tassel, and grain) demonstrated the N accumulation increased to a peak in the maturity period and that grain had the most N. The maximum N accumulative rate reached about 500 mg m-2d-1 in leaves and grain. Over the entire growing season, the soil nitrate N decreased by amounts ranging from 48.9 kg N ha-1 to 65.3 kg N ha-1 over the 90 cm profile and the loss of ammonia-N ranged from 9.79 to 12.69 kg N ha-1. With soil water loss and N balance calculation, the N usage efficiency (NUE) over the 0-90 cm soil profile was 43%. The soil hydrological process due to special soil texture and the temporal features of rainfall determined the maize growth in the freeze-thawing agricultural area.

The allometry of coarse root biomass: log-transformed linear regression or nonlinear regression?

PubMed

Lai, Jiangshan; Yang, Bo; Lin, Dunmei; Kerkhoff, Andrew J; Ma, Keping

2013-01-01

Precise estimation of root biomass is important for understanding carbon stocks and dynamics in forests. Traditionally, biomass estimates are based on allometric scaling relationships between stem diameter and coarse root biomass calculated using linear regression (LR) on log-transformed data. Recently, it has been suggested that nonlinear regression (NLR) is a preferable fitting method for scaling relationships. But while this claim has been contested on both theoretical and empirical grounds, and statistical methods have been developed to aid in choosing between the two methods in particular cases, few studies have examined the ramifications of erroneously applying NLR. Here, we use direct measurements of 159 trees belonging to three locally dominant species in east China to compare the LR and NLR models of diameter-root biomass allometry. We then contrast model predictions by estimating stand coarse root biomass based on census data from the nearby 24-ha Gutianshan forest plot and by testing the ability of the models to predict known root biomass values measured on multiple tropical species at the Pasoh Forest Reserve in Malaysia. Based on likelihood estimates for model error distributions, as well as the accuracy of extrapolative predictions, we find that LR on log-transformed data is superior to NLR for fitting diameter-root biomass scaling models. More importantly, inappropriately using NLR leads to grossly inaccurate stand biomass estimates, especially for stands dominated by smaller trees.

Biomass and nutrient concentration of sweet corn roots and shoots under organic amendments application.

PubMed

Ahmad, Amjad A; Fares, Ali; Paramasivam, Sivapatham; Elrashidi, Moustafa A; Savabi, Reza M

2009-09-01

Two field experiments were conducted at the Waimanalo research station on the island of O'ahu, Hawaii to study the effect of chicken (CM) and dairy (DM) manures on biomass and nutrient concentration in sweet corn roots and shoots. Sweet corn (super sweet 10, Zea Mays L. subsp. mays) was grown for two consecutive growing seasons under four rates of application (0, 168, 337, and 672 kg ha(-1) total N equivalent) and one time (OTA) or two time (TTA) applications of organic manure types and rates. There were significant effects of types, rates, and number of manure applications on dry biomass and macro- and micro-nutrient concentration in roots and shoots tissues. Results of root tissue indicated a significant accumulation of N and C under CM and DM treatments compared with the control treatment. Manure application rates significantly increased the accumulation of N and C in root tissue. Dry weight of roots and shoots and both macro- and micro-nutrient contents in the plant tissues significantly increased under TTA treatment compared with OTA treatment. There was a significant correlation (r(2) = 0.46 to 0.81) between root biomass, macro-, and micro-nutrient contents during both growing seasons. The results of the study indicates that amending soils with CM at the highest application rate provided the best crop performance in terms of root and shoot biomass, crop N, C, and other macro- and micro-nutrients.

A novel redox-sensitive system based on single-walled carbon nanotubes for chemo-photothermal therapy and magnetic resonance imaging.

PubMed

Hou, Lin; Yang, Xiaomin; Ren, Junxiao; Wang, Yongchao; Zhang, Huijuan; Feng, Qianhua; Shi, Yuyang; Shan, Xiaoning; Yuan, Yujie; Zhang, Zhenzhong

2016-01-01

Recently, nanomaterials with multiple functions, such as drug carrier, magnetic resonance imaging (MRI) and optical imaging, and photothermal therapy, have become more and more popular in cancer research. In this work, a novel redox-sensitive system constructed from hyaluronic acid (HA), single-walled carbon nanotubes (SWCNTs), doxorubicin (DOX), and gadolinium (Gd) was successfully developed. Herein, HA-modified SWCNTs (SWCNTs-HA) was first synthesized, and then DOX was conjugated with HA by disulfide bond (SWCNTs-HA-ss-DOX). Finally, MRI contrast agents, Gd(3+)-ion loading occurred through the sidewall defects of SWCNTs, whose cytotoxicity could be sequestered within the SWCNTs. In vitro release of DOX showed that this system accomplished much faster drug release under reducing condition. Confocal microscopy analysis confirmed that Gd/SWCNTs-HA-ss-DOX were capable of simultaneously delivering DOX and SWCNTs into Michigan Cancer Foundation-7 cells via HA receptor-mediated endocytosis followed by rapid transport of cargoes into the cytosol. Enhanced cytotoxicity of Gd/SWCNTs-HA-ss-DOX further proved that the sensitive system was more potent for intracellular drug delivery as compared with the insensitive control. Meanwhile, tumor cell killing potency was improved when Gd/SWCNTs-HA-ss-DOX were combined with near-infrared irradiation, with IC50 of 0.61 µg/mL at 48 hours. In vivo investigation demonstrated that Gd/SWCNTs-HA-ss-DOX could effectively accumulate in tumor sites and possessed the greatest synergistic antitumor efficacy, especially under the 808 nm laser irradiation. More importantly, this system could be used as a contrast agent for MRI to identify the location and extent of tumor tissues. These results suggested that Gd/SWCNTs-HA-ss-DOX might be a promising system for targeting chemo-photothermal therapy and MRI diagnosis in future clinical anticancer applications.

Economics- and policy-driven organic carbon input enhancement dominates soil organic carbon accumulation in Chinese croplands.

PubMed

Zhao, Yongcun; Wang, Meiyan; Hu, Shuijin; Zhang, Xudong; Ouyang, Zhu; Zhang, Ganlin; Huang, Biao; Zhao, Shiwei; Wu, Jinshui; Xie, Deti; Zhu, Bo; Yu, Dongsheng; Pan, Xianzhang; Xu, Shengxiang; Shi, Xuezheng

2018-04-17

China's croplands have experienced drastic changes in management practices, such as fertilization, tillage, and residue treatments, since the 1980s. There is an ongoing debate about the impact of these changes on soil organic carbon (SOC) and its implications. Here we report results from an extensive study that provided direct evidence of cropland SOC sequestration in China. Based on the soil sampling locations recorded by the Second National Soil Survey of China in 1980, we collected 4,060 soil samples in 2011 from 58 counties that represent the typical cropping systems across China. Our results showed that across the country, the average SOC stock in the topsoil (0-20 cm) increased from 28.6 Mg C ha -1 in 1980 to 32.9 Mg C ha -1 in 2011, representing a net increase of 140 kg C ha -1 year -1 However, the SOC change differed among the major agricultural regions: SOC increased in all major agronomic regions except in Northeast China. The SOC sequestration was largely attributed to increased organic inputs driven by economics and policy: while higher root biomass resulting from enhanced crop productivity by chemical fertilizers predominated before 2000, higher residue inputs following the large-scale implementation of crop straw/stover return policy took over thereafter. The SOC change was negatively related to N inputs in East China, suggesting that the excessive N inputs, plus the shallowness of plow layers, may constrain the future C sequestration in Chinese croplands. Our results indicate that cropland SOC sequestration can be achieved through effectively manipulating economic and policy incentives to farmers.

Influence of Environmental Factors, Cultural Practices, and Herbicide Application on Seed Germination and Emergence Ecology of Ischaemum rugosum Salisb

PubMed Central

Lim, Charlemagne Alexander A.; Awan, Tahir Hussain; Sta. Cruz, Pompe C.; Chauhan, Bhagirath Singh

2015-01-01

Ischaemum rugosum Salisb. (Saramolla grass) is a noxious weed of rice that is difficult to control by chemical or mechanical means once established. A study was conducted to determine the effect of light, temperature, salt, drought, flooding, rice residue mulch, burial depth, and pre-emergence herbicides on seed germination and emergence of I. rugosum. Germination was stimulated by light and inhibited under complete darkness. Optimum temperature for germination was 30/20°C (97.5% germination). Germination reduced from 31 to 3.5% when the osmotic potential of the growing medium decreased from -0.1 to -0.6 MPa and no germination occurred at -0.8 MPa. Germination was 18 and 0.5% at 50 and 100 mM NaCl concentrations, respectively, but was completely inhibited at 150 mM or higher. Residue application at 1–6 t ha-1 reduced weed emergence by 35–88% and shoot biomass by 55–95%. The efficacy of pre-emergence herbicides increased with increasing application rates and decreased with increasing rice residue mulching. The efficacy of herbicides was in the order of oxadiazon> pendimethalin> pretilachlor. At 6 t ha-1, all herbicides, regardless of rates, did not differ from the control treatment. I. rugosum seeds buried at 2 cm or deeper did not emerge; however, they emerged by 4.5 and 0.5% at 0.5 and 1 cm depths, respectively, compared to the 39% germination for soil surface seeding. Flooding at 4 DAS or earlier reduced seedling emergence and shoot biomass while flooding at 8 DAS reduced only seedling emergence. The depth and timing of flooding independently reduced root biomass. Flooding at 4 and 6 cm depths reduced the root biomass. Relative to flooding on the day of sowing, flooding at 8 DAS increased root biomass by 89%. Similarly, flooding on the day of sowing and at 2 DAS reduced the root–shoot biomass ratio. Under the no-flood treatment, increasing rates of pretilachlor from 0.075 to 0.3 kg ai ha-1 reduced weed emergence by 61–79%. At the flooding depth of 2–4 cm, pretilachlor reduced weed emergence and shoot and root biomass, but the differences across rates were non-significant. Information generated in this study will be helpful in developing integrated weed management strategies for managing this weed. PMID:26368808

Effect of hyaluronic acid on morphological changes to dentin surfaces and subsequent effect on periodontal ligament cell survival, attachment, and spreading.

PubMed

Mueller, Andrea; Fujioka-Kobayashi, Masako; Mueller, Heinz-Dieter; Lussi, Adrian; Sculean, Anton; Schmidlin, Patrick R; Miron, Richard J

2017-05-01

Hyaluronic acid (HA) is a natural constituent of connective tissues and plays an important role in their development, maintenance, and regeneration. Recently, HA has been shown to improve wound healing. However, no basic in vitro study to date has investigated its mode of action. Therefore, the purpose of this study was to examine morphological changes of dentin surfaces following HA coating and thereafter investigate the influence of periodontal ligament (PDL) cell survival, attachment, and spreading to dentin discs. HA was coated onto dentin discs utilizing either non-cross-linked (HA) or cross-linked (HA cl) delivery systems. Morphological changes to dentin discs were then assessed using scanning electron microscopy (SEM). Thereafter, human PDL cells were seeded under three in vitro conditions including (1) dilution of HA (1:100), (2) dilution of HA (1:10), and (3) HA coated directly to dentin discs. Samples were then investigated for PDL cell survival, attachment, and spreading using a live/dead assay, cell adhesion assay, and SEM imaging, respectively. While control dentin discs demonstrated smooth surfaces both at low and high magnification, the coating of HA altered surface texture of dentin discs by increasing surface roughness. HA cl further revealed greater surface texture/roughness likely due to the cross-linking carrier system. Thereafter, PDL cells were seeded on control and HA coated dentin discs and demonstrated a near 100 % survival rate for all samples demonstrating high biocompatibility of HA at dilutions of both 1:100 and 1:10. Interestingly, non-cross-linked HA significantly increased cell numbers at 8 h, whereas cross-linked HA improved cell spreading as qualitatively assessed by SEM. The results from the present study demonstrate that both carrier systems for HA were extremely biocompatible and demonstrated either improved cell numbers or cell spreading onto dentin discs. Future in vitro and animal research is necessary to further characterize the optimal delivery system of HA for improved clinical use. HA is a highly biocompatible material that may improve PDL cell attachment or spreading on dentin.

Micropore surface area of alkali-soluble plant macromolecules (humic acids) drives their decomposition rates in soil.

PubMed

Papa, Gabriella; Spagnol, Manuela; Tambone, Fulvia; Pilu, Roberto; Scaglia, Barbara; Adani, Fabrizio

2010-02-01

Previous studies suggested that micropore surface area (MSA) of alkali-soluble bio-macromolecules of aerial plant residues of maize constitutes an important factor that explains their humification in soil, that is, preservation against biological degradation. On the other hand, root plant residue contributes to the soil humus balance, as well. Following the experimental design used in a previous paper published in this journal, this study shows that the biochemical recalcitrance of the alkali-soluble acid-insoluble fraction of the root plant material, contributed to the root maize humification of both Wild-type maize plants and its corresponding mutant brown midrib (bm3), this latter characterized by reduced lignin content. Humic acids (HAs) existed in root (root-HAs) were less degraded in soil than corresponding HAs existed in shoot (shoot-HAs): shoot-HAs bm3 (48%)>shoot-HAs Wild-type (37%)>root-HAs Wild-type (33%)>root-HAs bm3 (22%) (degradability shown in parenthesis). These differences were related to the MSA of HAs, that is, root-HAs having a higher MSA than shoot-HAs: shoot-HAs bm3 (41.43+/-1.2m(2)g(-1))

[Shabbetay Donnolo's medical work].

PubMed

Tamani, G

1999-01-01

Shabbetay ben Abraham, called Donnolo, of Oria in Puglia (913 - post 982), is best known as a doctor. His Sefer-ha-mirqahot (the book of mixtures), often called Sefer-ha-yaqar (The precious book), containing directions for preparing medicinal roots, is based upon Greek medicine and is not only the oldest European Hebrew medical work but also the earliest medical book written in Italy (and probably in any Christian land of the West) in any language after the fall of the Roman Empire, and thus has a singular importance. After describing the preparation of the various herbs for medicinal purposes, Donnolo goes on to give prescriptions for relieving constipation, the hardening of the arteries, and rheumatic pains. Some one hundred and twenty names of medicinal plants and minerals occur in the course of this work.

[Human stem cells from apical papilla can regenerate dentin-pulp complex].

PubMed

Xiong, Huacui; Chen, Ke; Huang, Yibin; Liu, Caiqi

2013-10-01

To regenerate dentin-pulp complex by tissue engineering with human stem cells from apical papilla cells (SCAP) as the seed cells. SCAP was separated from from normal human impacted third molars with immature roots by outgrowth culture. The cells were then cultured in the differentiation medium for 3 weeks or in normal medium for 60 days, and analyzed for mineralization potential by Alizarin red staining. The osteo/odontogenic markers including alkaline phosphatase (ALP), bone sialoprotein (BSP), osteocalcin (OC) and dentin sialoprotein (DSP) were investigated by immunofluorescence staining and reverse transcription-polymerase chain reaction. The co-cultured mixture of SCAP and HA/TCP, or HA/TCP alone was implanted subcutaneously on the back of nude mice for 8 weeks, and the implants were collected and examined by HE and immunohistochemical staining. Round alizarin red-positive nodules formed in the isolated cells after cell culture in the differentiation medium for 3 weeks or in normal medium for 60 days with positive staining for osteo/odontogenic markers. SCAP with HA/TCP could regenerate pulp-dentin complex-like tissue in nude mice. The cells near the dentin-like tissue were positive for DSP. No mineral tissue was found in mice receiving HA/TCP implantation. SCAP may serve as a promising seed cell for dentin-pulp complex tissue engineering.

Increases in snap bean and soybean seedling diseases associated with a chloride salt and changes in the micro-partitioning of tap root calcium

USDA-ARS?s Scientific Manuscript database

In a series of field experiments from 1995 through 2010, the incidence of seedling diseases of snap bean and soybean caused by Rhizoctonia solani, Macrophomina phaseolina, Pythium spp., and Fusarium spp. was greater with an application of KCl than with K2SO4 applied at 93 kg K/ha. To determine if th...

Carbon allocation and nitrogen acquisition in a developing Populus deltoides plantation

Treesearch

Mark D. Coleman; Christel C. Kern

2004-01-01

We established Populus deltoides Bartr. stands differing in nitrogen (N) availability and tested if: (1) N-induced carbon (C) allocation could be explained by develop- mental allocation controls; and (2) N uptake per unit root mass, i.e., specific N-uptake rate, increased with N availability. Closely spaced (1 × 1 m) stands were treated with 50, 100 and 200 kg N ha ­...

Net Primary Productivity and Edaphic Fertility in Two Pluvial Tropical Forests in the Chocó Biogeographical Region of Colombia

PubMed Central

Quinto-Mosquera, Harley

2017-01-01

The net primary productivity (NPP) of tropical forests is a key process of the carbon cycle and therefore for the mitigation of global climate change. It has been proposed that NPP is limited by the availability of soil nutrients in lowland tropical forests and that belowground NPP decreases as edaphic fertility increases. This hypothesis was evaluated in two localities (Opogodó and Pacurita) of the Chocó Biogeographical region, one of the rainiest of the world, where the aboveground (litter and wood) and belowground (fine and coarse roots) components of NPP were measured. Fertility parameters (pH, nutrients, and texture) were also determined and related to NPP. Total NPP was similar between locations (23.7 vs. 24.2 t ha-1 year-1 for Opogodó and Pacurita, respectively). However, components of NPP showed differences: in Pacurita, with steeper topography, NPP of wood and coarse roots were higher; therefore, differences of topography and drainage between localities probably affected the NPP of wood. On the other hand, soils of Opogodó, where NPP of fine roots was higher, showed higher contents of sand, N+, and organic matter (OM). With the increase of pH, OM, N+, K, Mg, and sand, the NPP of leaves and fine roots as well as the percentage of NPP belowground also increased, which suggests NPP limitation by multiple nutrients. The increase of NPP belowground with the availability of edaphic nutrients evidenced a redistribution of the aboveground and belowground components of NPP with the increase of soil fertility in oligotrophic systems, probably as a mechanism to improve the capture of resources. PMID:28114418

Net Primary Productivity and Edaphic Fertility in Two Pluvial Tropical Forests in the Chocó Biogeographical Region of Colombia.

PubMed

Quinto-Mosquera, Harley; Moreno, Flavio

2017-01-01

The net primary productivity (NPP) of tropical forests is a key process of the carbon cycle and therefore for the mitigation of global climate change. It has been proposed that NPP is limited by the availability of soil nutrients in lowland tropical forests and that belowground NPP decreases as edaphic fertility increases. This hypothesis was evaluated in two localities (Opogodó and Pacurita) of the Chocó Biogeographical region, one of the rainiest of the world, where the aboveground (litter and wood) and belowground (fine and coarse roots) components of NPP were measured. Fertility parameters (pH, nutrients, and texture) were also determined and related to NPP. Total NPP was similar between locations (23.7 vs. 24.2 t ha-1 year-1 for Opogodó and Pacurita, respectively). However, components of NPP showed differences: in Pacurita, with steeper topography, NPP of wood and coarse roots were higher; therefore, differences of topography and drainage between localities probably affected the NPP of wood. On the other hand, soils of Opogodó, where NPP of fine roots was higher, showed higher contents of sand, N+, and organic matter (OM). With the increase of pH, OM, N+, K, Mg, and sand, the NPP of leaves and fine roots as well as the percentage of NPP belowground also increased, which suggests NPP limitation by multiple nutrients. The increase of NPP belowground with the availability of edaphic nutrients evidenced a redistribution of the aboveground and belowground components of NPP with the increase of soil fertility in oligotrophic systems, probably as a mechanism to improve the capture of resources.

Response of rice genotypes to weed competition in dry direct-seeded rice in India.

PubMed

Mahajan, Gulshan; Ramesha, Mugalodi S; Chauhan, Bhagirath S

2014-01-01

The differential weed-competitive abilities of eight rice genotypes and the traits that may confer such attributes were investigated under partial weedy and weed-free conditions in naturally occurring weed flora in dry direct-seeded rice during the rainy seasons of 2011 and 2012 at Ludhiana, Punjab, India. The results showed genotypic differences in competitiveness against weeds. In weed-free plots, grain yield varied from 6.6 to 8.9 t ha(-1) across different genotypes; it was lowest for PR-115 and highest for the hybrid H-97158. In partial weedy plots, grain yield and weed biomass at flowering varied from 3.6 to 6.7 t ha(-1) and from 174 to 419 g m(-2), respectively. In partial weedy plots, grain yield was lowest for PR-115 and highest for PR-120. Average yield loss due to weed competition ranged from 21 to 46% in different rice genotypes. The study showed that early canopy closure, high leaf area index at early stage, and high root biomass and volume correlated positively with competitiveness. This study suggests that some traits (root biomass, leaf area index, and shoot biomass at the early stage) could play an important role in conferring weed competitiveness and these traits can be explored for dry-seeded rice.

Genetic analysis reveals efficient sexual spore dispersal at a fine spatial scale in Armillaria ostoyae, the causal agent of root-rot disease in conifers.

PubMed

Dutech, Cyril; Labbé, Frédéric; Capdevielle, Xavier; Lung-Escarmant, Brigitte

Armillaria ostoyae (sometimes named Armillaria solidipes) is a fungal species causing root diseases in numerous coniferous forests of the northern hemisphere. The importance of sexual spores for the establishment of new disease centres remains unclear, particularly in the large maritime pine plantations of southwestern France. An analysis of the genetic diversity of a local fungal population distributed over 500 ha in this French forest showed genetic recombination between genotypes to be frequent, consistent with regular sexual reproduction within the population. The estimated spatial genetic structure displayed a significant pattern of isolation by distance, consistent with the dispersal of sexual spores mostly at the spatial scale studied. Using these genetic data, we inferred an effective density of reproductive individuals of 0.1-0.3 individuals/ha, and a second moment of parent-progeny dispersal distance of 130-800 m, compatible with the main models of fungal spore dispersal. These results contrast with those obtained for studies of A. ostoyae over larger spatial scales, suggesting that inferences about mean spore dispersal may be best performed at fine spatial scales (i.e. a few kilometres) for most fungal species. Copyright © 2017 British Mycological Society. Published by Elsevier Ltd. All rights reserved.

Hyaluronic Acid-Based pH-Sensitive Polymer-Modified Liposomes for Cell-Specific Intracellular Drug Delivery Systems.

PubMed

Miyazaki, Maiko; Yuba, Eiji; Hayashi, Hiroshi; Harada, Atsushi; Kono, Kenji

2018-01-17

For the enhancement of therapeutic effects and reduction of side effects derived from anticancer drugs in cancer chemotherapy, it is imperative to develop drug delivery systems with cancer-specificity and controlled release function inside cancer cells. pH-sensitive liposomes are useful as an intracellular drug delivery system because of their abilities to transfer their contents into the cell interior through fusion or destabilization of endosome, which has weakly acidic environment. We earlier reported liposomes modified with various types of pH-sensitive polymers based on synthetic polymers and biopolymers as vehicles for intracellular drug delivery systems. In this study, hyaluronic acid (HA)-based pH-sensitive polymers were designed as multifunctional polymers having not only pH-sensitivity but also targeting properties to cells expressing CD44, which is known as a cancer cell surface marker. Carboxyl group-introduced HA derivatives of two types, MGlu-HA and CHex-HA, which have a more hydrophobic side chain structure than that of MGlu-HA, were synthesized by reaction with various dicarboxylic anhydrides. These polymer-modified liposomes were stable at neutral pH, but showed content release under weakly acidic conditions. CHex-HA-modified liposomes delivered their contents into CD44-expressing cells more efficiently than HA-modified or MGlu-HA-modified liposomes or unmodified liposomes, whereas the same liposomes were taken up only slightly by cells expressing CD44 proteins less. Competition assay using free HA or other polymers revealed that HA derivative-modified liposomes might be recognized by CD44. Therefore, HA-derivative-modified liposomes are useful as cell-specific intracellular drug delivery systems.

Expression of the high-affinity choline transporter, CHT1, in the neuronal and non-neuronal cholinergic system of human and rat skin.

PubMed

Haberberger, Rainer Viktor; Pfeil, Uwe; Lips, Katrin Susanne; Kummer, Wolfgang

2002-10-01

Choline is an essential component in acetylcholine biosynthesis, and is involved in cell signaling. It is unable to permeate the cell membrane and requires a transporter to enter the cell. Neurons that synthesize acetylcholine take up choline by a recently cloned high-affinity choline transporter (choline transporter 1) that is Na+-dependent and can be blocked by hemicholinium-3. The aim of this study was to determine the expression and to analyze the distribution of choline transporter 1 in human and rat skin. The mRNA for choline transporter 1 was detected in rat and human skin and in the human keratinocyte cell line HaCaT. A polyclonal anti-serum was developed against the N-terminal region of the human and rat protein. In rat and human skin, choline transporter 1 immunoreactivity was present in nerve fibers. In addition, keratinocytes, HaCaT cells and cells of the internal root sheath of the hair follicle contained choline transporter 1 immunoreactivity. The labeling patterns of nonconfluent vs confluent cultured cells and the distribution of choline transporter 1 along the epidermal layer suggest an association of choline transporter 1 with keratinocyte differentiation. In conclusion, this study shows the presence of the high-affinity choline transporter choline transporter 1 in nerve fibers and epithelial cells in the human and rat skin supporting the pivotal role of this transporter in both the neuronal and non-neuronal cholinergic system of the skin.

Activation of Oxygen and Hydrogen Peroxide by Copper(II) Coupled with Hydroxylamine for Oxidation of Organic Contaminants.

PubMed

Lee, Hongshin; Lee, Hye-Jin; Seo, Jiwon; Kim, Hyung-Eun; Shin, Yun Kyung; Kim, Jae-Hong; Lee, Changha

2016-08-02

This study reports that the combination of Cu(II) with hydroxylamine (HA) (referred to herein as Cu(II)/HA system) in situ generates H2O2 by reducing dissolved oxygen, subsequently producing reactive oxidants through the reaction of Cu(I) with H2O2. The external supply of H2O2 to the Cu(II)/HA system (i.e., the Cu(II)/H2O2/HA system) was found to further enhance the production of reactive oxidants. Both the Cu(II)/HA and Cu(II)/H2O2/HA systems effectively oxidized benzoate (BA) at pH between 4 and 8, yielding a hydroxylated product, p-hydroxybenzoate (pHBA). The addition of a radical scavenger, tert-butyl alcohol, inhibited the BA oxidation in both systems. However, electron paramagnetic resonance (EPR) spectroscopy analysis indicated that (•)OH was not produced under either acidic or neutral pH conditions, suggesting that the alternative oxidant, cupryl ion (Cu(III)), is likely a dominant oxidant.

A new strategy to sustained release of ocular drugs by one-step drug-loaded microcapsule manufacturing in hydrogel punctal plugs.

PubMed

Xie, Jiajun; Wang, Changjun; Ning, Qingyao; Gao, Qi; Gao, Changyou; Gou, Zhongru; Ye, Juan

2017-11-01

To design an injectable hyaluronate (HA)-based hydrogel system that contains drug-loaded microcapsules as resorbable plugs to deliver ocular drugs. In-situ drug-loaded, core-shell-structured chitosan (CS)@HA microcapsules were fabricated via HA hydrosol collecting in electrospun bead-rich CS fibers under continuous stirring. An injectable and cytocompatible hydrogel system with different degrees of chemical crosslinking maintained viscoelastic and sustained drug release for a long-term period of time at body temperature in vitro. With the addition of adipic dihydrazide (ADH) or 1-Ethyl-3-(3-dimethyllaminopropyl) carbodiimide hydrochloride (EDCI), HA hydrosols transited from liquid to solid state at the gel point, with the G'/G″ ratio varying between 1.43 and 5.32 as a function of crosslinker concentration in the hydrogel phase. Ofloxacin (OFL) release from the mechanically mixed hydrosol system (CS-HA-A0-E0) and the micro-encapsulated hydrosol formulation (CS@HA-A0-E0) were respectively over 80% and 51% of the total drug load leaching out within 24 h. As for the drug-mixed hydrogel systems with low (CS-HA-A0.06-E0.15) and high (CS-HA-A0.06-E0.30) crosslinking density, the OFL release rate reached 38.5 and 46.6% respectively, while the micro-encapsulated hydrogel systems with low (CS@HA-A0.06-E0.15) and high (CS@HA-A0.6-E0.30) showed only (11.9 ± 2.7)% and (17.4 ± 3.5)% drug release respectively. A one-step in-situ drug-capsulizing method is developed to fabricate a resorbable hydrogel punctal plug with extended drug release. The chemistry of the crosslinking reaction involves the formation of highly biocompatible HA derivatives. Thus, the hydrogel can be used directly in the tear drainage canalicular system.

Polynuclear aromatic hydrocarbon uptake by carrots grown in sludge-amended soil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wild, S.R.; Jones, K.C.

The uptake of polynuclear aromatic hydrocarbons (PAHs) from sewage sludge-amended soils by carrots (Daucus carota) was investigated. Carrots were grown in control soils and soils amended with three sludge application rates, 15, 55, and 180 t/ha. Applied sludge contained 17.2 mg [summation]PAH/kg, a concentration typical for a sludge derived from a rural area. Carrot foliage, root peels and root cores were analyzed for 15 PAH compounds. Carrots foliage PAH concentrations were unaffected by sludge applications (PAH loadings), but root peel PAH concentrations increased to a plateau concentration with increasing soil PAH levels. Low molecular weight PAH compounds dominate dindividual componentsmore » of the [summation]PAH load in the root tissues. The PAH concentrations detected in the root peels were all significantly lower than in the foliage, which receives PAH inputs from the atmosphere. Carrot core [summation]PAH concentrations were unaffected by sludge application, implying little or no transfer of PAHs from the peels to the core. About 70% of the PAH burden found in carrots was associated with the peels. Fresh weight carrot core concentrations were all <4.2 [mu]g/kg. Overall, this investigation suggests that the risks posed to human health by PAHs applied in sewage sludge to arable soils are minimal.« less

Contrasting effects of biochar versus manure on soil microbial communities and enzyme activities in an Aridisol.

PubMed

Elzobair, Khalid A; Stromberger, Mary E; Ippolito, James A; Lentz, Rodrick D

2016-01-01

Biochar can increase microbial activity, alter microbial community structure, and increase soil fertility in arid and semi-arid soils, but at relatively high rates that may be impractical for large-scale field studies. This contrasts with organic amendments such as manure, which can be abundant and inexpensive if locally available, and thus can be applied to fields at greater rates than biochar. In a field study comparing biochar and manure, a fast pyrolysis hardwood biochar (22.4 Mg ha(-1)), dairy manure (42 Mg ha(-1) dry wt), a combination of biochar and manure at the aforementioned rates, or no amendment (control) was applied to an Aridisol (n=3) in fall 2008. Plots were annually cropped to corn (Zea maize L.). Surface soils (0-30 cm) were sampled directly under corn plants in late June 2009 and early August 2012, and assayed for microbial community fatty acid methyl ester (FAME) profiles and six extracellular enzyme activities involved in soil C, N, and P cycling. Arbuscular mycorrhizal (AM) fungal colonization was assayed in corn roots in 2012. Biochar had no effect on microbial biomass, community structure, extracellular enzyme activities, or AM fungi root colonization of corn. In the short-term, manure amendment increased microbial biomass, altered microbial community structure, and significantly reduced the relative concentration of the AM fungal biomass in soil. Manure also reduced the percent root colonization of corn by AM fungi in the longer-term. Thus, biochar and manure had contrasting short-term effects on soil microbial communities, perhaps because of the relatively low application rate of biochar. Copyright © 2015 Elsevier Ltd. All rights reserved.

A Miniature Swine Model for Stem Cell-Based De Novo Regeneration of Dental Pulp and Dentin-Like Tissue.

PubMed

Zhu, Xiaofei; Liu, Jie; Yu, Zongdong; Chen, Chao-An; Aksel, Hacer; Azim, Adham A; Huang, George T-J

2018-02-01

The goal of this study was to establish mini-swine as a large animal model for stem cell-based pulp regeneration studies. Swine dental pulp stem cells (sDPSCs) were isolated from mini-swine and characterized in vitro. For in vivo studies, we first employed both ectopic and semi-orthotopic study models using severe combined immunodeficiency mice. One is hydroxyapatite-tricalcium phosphate (HA/TCP) model for pulp-dentin complex formation, and the other is tooth fragment model for complete pulp regeneration with new dentin depositing along the canal walls. We found that sDPSCs are similar to their human counterparts exhibiting mesenchymal stem cell characteristics with ability to form colony forming unit-fibroblastic and odontogenic differentiation potential. sDPSCs formed pulp-dentin complex in the HA/TCP model and showed pulp regeneration capacity in the tooth fragment model. We then tested orthotopic pulp regeneration on mini-swine including the use of multi-rooted teeth. Using autologous sDPSCs carried by hydrogel and transplanted into the mini-swine root canal space, we observed regeneration of vascularized pulp-like tissue with a layer of newly deposited dentin-like (rD) tissue or osteodentin along the canal walls. In some cases, dentin bridge-like structure was observed. Immunohistochemical analysis detected the expression of nestin, dentin sialophosphoprotein, dentin matrix protein 1, and bone sialoprotein in odontoblast-like cells lining against the produced rD. We also tested the use of allogeneic sDPSCs for the same procedures. Similar findings were observed in allogeneic transplantation. This study is the first to show an establishment of mini-swine as a suitable large animal model utilizing multi-rooted teeth for further cell-based pulp regeneration studies.

Back to Acid Soil Fields: The Citrate Transporter SbMATE Is a Major Asset for Sustainable Grain Yield for Sorghum Cultivated on Acid Soils.

PubMed

Carvalho, Geraldo; Schaffert, Robert Eugene; Malosetti, Marcos; Viana, Joao Herbert Moreira; Menezes, Cicero Bezerra; Silva, Lidianne Assis; Guimaraes, Claudia Teixeira; Coelho, Antonio Marcos; Kochian, Leon V; van Eeuwijk, Fred A; Magalhaes, Jurandir Vieira

2015-12-17

Aluminum (Al) toxicity damages plant roots and limits crop production on acid soils, which comprise up to 50% of the world's arable lands. A major Al tolerance locus on chromosome 3, AltSB, controls aluminum tolerance in sorghum [Sorghum bicolor (L.) Moench] via SbMATE, an Al-activated plasma membrane transporter that mediates Al exclusion from sensitive regions in the root apex. As is the case with other known Al tolerance genes, SbMATE was cloned based on studies conducted under controlled environmental conditions, in nutrient solution. Therefore, its impact on grain yield on acid soils remains undetermined. To determine the real world impact of SbMATE, multi-trait quantitative trait loci (QTL) mapping in hydroponics, and, in the field, revealed a large-effect QTL colocalized with the Al tolerance locus AltSB, where SbMATE lies, conferring a 0.6 ton ha(-1) grain yield increase on acid soils. A second QTL for Al tolerance in hydroponics, where the positive allele was also donated by the Al tolerant parent, SC283, was found on chromosome 9, indicating the presence of distinct Al tolerance genes in the sorghum genome, or genes acting in the SbMATE pathway leading to Al-activated citrate release. There was no yield penalty for AltSB, consistent with the highly localized Al regulated SbMATE expression in the root tip, and Al-dependent transport activity. A female effect of 0.5 ton ha(-1) independently demonstrated the effectiveness of AltSB in hybrids. Al tolerance conferred by AltSB is thus an indispensable asset for sorghum production and food security on acid soils, many of which are located in developing countries. Copyright © 2016 Carvalho et al.

Nano-hydroxyapatite/β-CD/chitosan nanocomposite for potential applications in bone tissue engineering.

PubMed

Shakir, Mohammad; Jolly, Reshma; Khan, Mohd Shoeb; Rauf, Ahmar; Kazmi, Shadab

2016-12-01

Herein, we report the synthesis of a novel tri-component nanocomposite system incorporating β-cyclodextrin (β-CD) with nano-hydroxyapatite (n-HA) and chitosan (CS), (n-HA/β-CD/CS) at three different temperatures via co-precipitation method. The chemical interactions and surface morphology have been evaluated by TEM, SEM and AFM techniques revealing the agglomerated nanoparticles in CS/n-HA-HA binary system whereas the ternary systems produced needle shaped nanoparticles dispersed homogeneously at low temperature with more porous and rougher surface. The addition of β-CD in CS/n-HA at low temperature decreased the particle size and raised the thermal stability as compared to CS/n-HA. The comparative hemolytic, protein adsorption and platelet adhesion studies confirmed the better hemocompatibility of n-HA/β-CD/CS-(RT,HT,LT) nanocomposites relative to CS/n-HA. The cell viability has been evaluated in vitro using MG-63 cell line which revealed superior non toxicity of n-HA/β-CD/CS-LT nanocomposite in comparison to n-HA/β-CD/CS-(RT,HT) and CS/n-HA nanocomposites. Thus it may be concluded that the orchestrated organic/inorganic n-HA/β-CD/CS-(RT,HT,LT) nanocomposites exhibited relatively higher cell viability of human osteoblast cells, stimulated greater osteogenesis, controlled biodegradation, enhanced antibacterial activity with excellent in-vitro biomineralization and remarkable mechanical parameters as compared to CS/n-HA nanocomposite and thus may provide opportunities for potential use as an alternative biomaterial for Bone tissue engineering applications. Copyright © 2016 Elsevier B.V. All rights reserved.

Transcriptome Analysis of Salicylic Acid Treatment in Rehmannia glutinosa Hairy Roots Using RNA-seq Technique for Identification of Genes Involved in Acteoside Biosynthesis

PubMed Central

Wang, Fengqing; Zhi, Jingyu; Zhang, Zhongyi; Wang, Lina; Suo, Yanfei; Xie, Caixia; Li, Mingjie; Zhang, Bao; Du, Jiafang; Gu, Li; Sun, Hongzheng

2017-01-01

Rehmannia glutinosa is a common bulk medicinal material that has been widely used in China due to its active ingredients. Acteoside, one of the ingredients, has antioxidant, antinephritic, anti-inflammatory, hepatoprotective, immunomodulatory, and neuroprotective effects, is usually selected as a quality-control component for R. glutinosa herb in the Chinese Pharmacopeia. The acteoside biosynthesis pathway in R. glutinosa has not yet been clearly established. Herein, we describe the establishment of a genetic transformation system for R. glutinosa mediated by Agrobacterium rhizogenes. We screened the optimal elicitors that markedly increased acteoside accumulation in R. glutinosa hairy roots. We found that acteoside accumulation dramatically increased with the addition of salicylic acid (SA); the optimal SA dose was 25 μmol/L for hairy roots. RNA-seq was applied to analyze the transcriptomic changes in hairy roots treated with SA for 24 h in comparison with an untreated control. A total of 3,716, 4,018, and 2,715 differentially expressed transcripts (DETs) were identified in 0 h-vs.-12 h, 0 h-vs.-24 h, and 12 h-vs.-24 h libraries, respectively. KEGG pathway-based analysis revealed that 127 DETs were enriched in “phenylpropanoid biosynthesis.” Of 219 putative unigenes involved in acteoside biosynthesis, 54 were found to be up-regulated at at least one of the time points after SA treatment. Selected candidate genes were analyzed by quantitative real-time PCR (qRT-PCR) in hairy roots with SA, methyl jasmonate (MeJA), AgNO3 (Ag+), and putrescine (Put) treatment. All genes investigated were up-regulated by SA treatment, and most candidate genes were weakly increased by MeJA to some degree. Furthermore, transcription abundance of eight candidate genes in tuberous roots of the high-acteoside-content (HA) cultivar QH were higher than those of the low-acteoside-content (LA) cultivar Wen 85-5. These results will pave the way for understanding the molecular basis of acteoside biosynthesis in R. glutinosa, and can serve as a basis for future validation studies. PMID:28567046

Sunflower (Helianthus annuus L.).

PubMed

Radonic, Laura M; Lewi, Dalia M; López, Nilda E; Hopp, H Esteban; Escandón, Alejandro S; Bilbao, Marisa López

2015-01-01

Sunflower (Helianthus annuus L.) is still considered as a recalcitrant species to in vitro culture and transformation in spite of the publication of different protocols. Here we describe a routine transformation system of this crop which requires mature HA89 genotype seeds and Agrobacterium tumefaciens EHA105 strain for gene delivery, being both easily available. Selection of transformed shoots depends on root development in kanamycin-selective media, instead of shoot color, avoiding selection of escapes. The establishment of this protocol proved successful for the incorporation of both reporter and agronomic important genes and also for the evaluation of the specific expression patterns of different promoters in transgenic sunflower plants. Stable expression of the incorporated transgenes was confirmed by RT-PCR and GUS reporter gene visualization. Stable inheritance of transgenes was successfully followed until T2 generation in several independent lines.

Seasonal Soil Nitrogen Mineralization within an Integrated Crop and Livestock System in Western North Dakota, USA

NASA Astrophysics Data System (ADS)

Landblom, Douglas; Senturklu, Songul; Cihacek, Larry; Pfenning, Lauren; Brevik, Eric C.

2015-04-01

Protecting natural resources while maintaining or maximizing crop yield potential is of utmost importance for sustainable crop and livestock production systems. Since soil organic matter and its decomposition by soil organisms is at the very foundation of healthy productive soils, systems research at the North Dakota State University Dickinson Research Extension Center is evaluating seasonal soil nitrogen fertility within an integrated crop and livestock production system. The 5-year diverse crop rotation is: sunflower (SF) - hard red spring wheat (HRSW) - fall seeded winter triticale-hairy vetch (THV; spring harvested for hay)/spring seeded 7-species cover crop (CC) - Corn (C) (85-90 day var.) - field pea-barley intercrop (PBY). The HRSW and SF are harvested as cash crops and the PBY, C, and CC are harvested by grazing cattle. In the system, yearling beef steers graze the PBY and C before feedlot entry and after weaning, gestating beef cows graze the CC. Since rotation establishment, four crop years have been harvested from the crop rotation. All crops have been seeded using a JD 1590 no-till drill except C and SF. Corn and SF were planted using a JD 7000 no-till planter. The HRSW, PBY, and CC were seeded at a soil depth of 3.8 cm and a row width of 19.1 cm. Seed placement for the C and SF crops was at a soil depth of 5.1 cm and the row spacing was 0.762 m. The plant population goal/ha for C, SF, and wheat was 7,689, 50,587, and 7,244 p/ha, respectively. During the 3rd cropping year, soil bulk density was measured and during the 4th cropping year, seasonal nitrogen fertility was monitored throughout the growing season from June to October. Seasonal nitrate nitrogen (NO3-N), ammonium nitrogen (NH4-N), total season mineral nitrogen (NO3-N + NH4-N), cropping system NO3-N, and bulk density were measured in 3 replicated non-fertilized field plot areas within each 10.6 ha triple replicated crop fields. Within each plot area, 6 - 20.3 cm x 0.61 m aluminum irrigation pipes were pressed into the soil as enclosures to restrict root access to soil nitrogen. Soil samples were taken as close to 2-week intervals as possible from both inside and outside the enclosures. The crop rotation N values were also compared to triple replicated perennial native grassland plot areas (predominate sp. Western wheatgrass - Pascopyrum smithii, Blue grama - Bouteloua gracilis, Little bluestem - Schizachyrium scoparium, Switchgrass - Panicum virgatum). Trends identified for both NH4-N and NO3-N indicate that the values are relatively similar with respect to seasonal change over time. There was a greater amount of soil nitrogen accumulation inside the enclosures indicating that outside the enclosures roots scavenge nitrogen for plant growth and production. Seasonally, comparing the cropping system crops, NO3-N declined mid-July and then rebounded by mid-August and continued to increase until leveling off in September. Corn NO3-N, however, did not follow this pattern, but increased from early June to the end of June and remained high until the first of September. We will present the results of bulk density data and seasonal N fertility data providing evidence for the impact of previous CC on corn production. Probable explanation for the mid-summer nitrogen decline will be presented and justification for reduced fertilizer application will be discussed.

Water Wise Sustainable Farming in the Southeast USA: It's All About the Roots

NASA Astrophysics Data System (ADS)

Bartel, R. L., Jr.; Dourte, D. R.; George, S.

2014-12-01

Sod based crop rotation (SBR) is a relatively new system of practice that incorporates at least 2 years of a perennial grass followed by a peanut and then cotton rotation. After 15 years of research on farm scale sites, this system has been found to have many advantages over conventional 3 year peanut-cotton-cotton rotations. These benefits include: increased profits; dramatic reductions in irrigation demand, fertilizer (N,P) pesticide use, and energy consumption; and, better carbon sequestration potential. The SBR system works primarily due to enhancement of plant root growth and improvement to soil properties. To forecast the water savings potential of sod based rotation, we employ the Soil Water Assessment Tool (SWAT) model to simulate irrigation water demands over a 34 year period (1980-2013). We utilize data from a distributed network of weather stations to represent a range of climate conditions in the Florida, Georgia and Alabama area and data that represent a range of soil physical properties. The only calibration parameter adjusted in SWAT to distinguish between the new and conventional system of farming is rooting depth. Each model result providing 34 years of annual irrigation water requirements was fit to a cumulative probability distribution function to forecast the water savings potential of SBR. Depending upon soil type and weather station location, forecasted water savings using SBR ranged between 20.3 and 33.1 cm during a 10% chance drought year. With over 526,000 ha of irrigated conventional acres in cotton and peanut within the states of Alabama, Florida, Georgia, and South Carolina alone, this equates to a potential water savings of 1.07 billion to 1.74 billion m3 of water in a drought year. The cumulative mitigative effect of this system has yet to be realized through actual application in these states. However, even at low rates of application it is evident that SBR could significantly reduce the negative impacts of irrigation in the Southeast US as well as other locations where row crops grow in humid subtropical climates.

Topographic Control of Aboveground Carbon Pools Across an Environmental Gradient, Eastern Slope of the Rocky Mountains, Colorado.

NASA Astrophysics Data System (ADS)

Swetnam, T. L.; Brooks, P. D.; Gallo, E. L.; Barnard, H. R.; Harpold, A. A.

2015-12-01

Evaluating at high spatial-resolution the topographical and ecological structures of the critical zone (CZ) are now routine with aerial LiDAR. Here we evaluated the eco-hydrological differences of topographic metrics (the independent variables) versus individual tree and gridded aboveground carbon (AGC) pools (as dependent variables) at multiple length-scales across an elevation modified gradient of precipitation and temperature in the Boulder Creek CZ Observatory Watershed, Colorado USA. We describe the responses in AGC within the context of a three-zone eco-hydrological model, e.g. toe slope and valley bottoms (Zone 1), transitional hillslopes (Zone 2), and upper slopes to ridges (Zone 3). In a GIS we compared three separate zero-order basins: (1) the Betasso Preserve: 1,810-2,024 meters above mean sea level (m aμsl), area = 0.45 km2, n = 17,286 trees; (2) Upper and Lower Gordon Gulch: 2,446-2,737 m aμsl, area = 3.57 km2, n = 178,469 trees; and (3) Como Creek: 2,900m-3,560 m aμsl, area = 6.64 km2, n = 317,274 trees. In each of the three catchments Zone 1 held the greatest mean AGC (μ = 52.88-60.97 Mg C ha-1) and maximum AGC (99% confidence interval (CI, p = 0.01) = 152.95-184.95 Mg C ha-1) relative to Zone 2 (μ = 27.84-44.52 Mg C ha-1, 99% CI = 99.67-122.4 Mg C ha-1) and Zone 3 (μ = 12.63-30.33 Mg C ha-1, 99% CI = 62.16-92.65 Mg C ha-1). Topography with negative general curvatures (i.e. convergent shapes) had greater AGC (μ = 73.7-96.3 Mg C ha-1, 99% CI = 189.0-355.8 Mg C ha-1) than positive general curvatures (i.e. divergent shapes) (μ = 17.4-30.8 Mg C ha-1, 99% CI = 88.2-120.4 Mg C ha-1), but only when evaluated at longer length scales (<10 m). Larger AGC pools are postulated to be related to (1) increased soil depth which provides larger rooting zones and (2) access to groundwater along Zone 1, vs Zones 2 and 3 which have (a) shallower soils and (b) less or zero accessibility to groundwater.

Effect of grassland cutting frequency on soil carbon storage - a case study on public lawns in three Swedish cities

NASA Astrophysics Data System (ADS)

Poeplau, C.; Marstorp, H.; Thored, K.; Kätterer, T.

2016-04-01

Soils contain the largest terrestrial carbon pool and thus play a crucial role in the global carbon cycle. Grassland soils have particularly high soil organic carbon (SOC) stocks. In Europe (EU 25), grasslands cover 22 % of the land area. It is therefore important to understand the effects of grassland management and management intensity on SOC storage. City lawns constitute a unique study system in this context, since they provide a high functional diversity and thus a wide range of different management intensities per unit area. In this study we investigated frequently mown (on average eight times per season) utility lawns and rarely mown (once per season) meadow-like lawns at three multi-family housing areas in each of three Swedish cities: Uppsala, Malmö, and Gothenburg. The two different lawn types were compared regarding their aboveground net primary production (NPP) and SOC storage. In addition, root biomass was determined in Uppsala. We found significantly higher aboveground NPP and SOC concentrations and significantly lower soil C : N ratio for the utility lawns compared with the meadow-like lawns. On average, aboveground NPP was 24 % or 0.7 Mg C ha-1 yr-1 higher and SOC was 12 % or 7.8 Mg ha-1 higher. Differences in SOC were well explained by differences in aboveground NPP (R2 = 0.39), which indicates that the increase in productivity due to more optimum CO2-assimilating leaf area, leading to higher carbon input to the soil, was the major driver for soil carbon sequestration. Differences in soil C : N ratio indicated a more closed N cycle in utility lawns, which might have additionally affected SOC dynamics. We did not find any difference in root biomass between the two management regimes, and concluded that cutting frequency most likely only exerts an effect on SOC when cuttings are left on the surface.

Supporting Timely Humanitarian Assistance/Disaster Relief (HA/DR) Decisions Through Geospatial Intelligence (GEOINT) and Geographical Information Systems (GIS) Tools

DTIC Science & Technology

2014-05-22

attempted to respond to the advances in technology and the growing power of geographical information system (GIS) tools. However, the doctrine...Geospatial intelligence (GEOINT), Geographical information systems (GIS) tools, Humanitarian Assistance/Disaster Relief (HA/DR), 2010 Haiti Earthquake...Humanitarian Assistance/Disaster Relief (HA/DR) Decisions Through Geospatial Intelligence (GEOINT) and Geographical Information Systems (GIS) Tools

Comparison greenhouse gas (GHG) emissions and global warming potential (GWP) effect of energy use in different wheat agroecosystems in Iran.

PubMed

Yousefi, Mohammad; Mahdavi Damghani, Abdolmajid; Khoramivafa, Mahmud

2016-04-01

The aims of this study were to determine energy requirement and global warming potential (GWP) in low and high input wheat production systems in western of Iran. For this purpose, data were collected from 120 wheat farms applying questionnaires via face-to-face interviews. Results showed that total energy input and output were 60,000 and 180,000 MJ ha(-1) in high input systems and 14,000 and 56,000 MJ ha(-1) in low input wheat production systems, respectively. The highest share of total input energy in high input systems recorded for electricity power, N fertilizer, and diesel fuel with 36, 18, and 13 %, respectively, while the highest share of input energy in low input systems observed for N fertilizer, diesel fuel, and seed with 32, 31, and 27 %. Energy use efficiency in high input systems (3.03) was lower than of low input systems (3.94). Total CO2, N2O, and CH4 emissions in high input systems were 1981.25, 31.18, and 1.87 kg ha(-1), respectively. These amounts were 699.88, 0.02, and 0.96 kg ha(-1) in low input systems. In high input wheat production systems, total GWP was 11686.63 kg CO2eq ha(-1) wheat. This amount was 725.89 kg CO2eq ha(-1) in low input systems. The results show that 1 ha of high input system will produce greenhouse effect 17 times of low input systems. So, high input production systems need to have an efficient and sustainable management for reducing environmental crises such as change climate.

Nitrogen and phosphorus runoff losses from variable and constant intensity rainfall simulations on loamy sand under conventional and strip tillage systems.

PubMed

Franklin, D; Truman, C; Potter, T; Bosch, D; Strickland, T; Bednarz, C

2007-01-01

Further studies on the quality of runoff from tillage and cropping systems in the southeastern USA are needed to refine current risk assessment tools for nutrient contamination. Our objective was to quantify and compare effects of constant (Ic) and variable (Iv) rainfall intensity patterns on inorganic nitrogen (N) and phosphorus (P) losses from a Tifton loamy sand (Plinthic Kandiudult) cropped to cotton (Gossypium hirsutum L.) and managed under conventional (CT) or strip-till (ST) systems. We simulated rainfall at a constant intensity and a variable intensity pattern (57 mm h(-1)) and collected runoff continuously at 5-min intervals for 70 min. For cumulative runoff at 50 min, the Iv pattern lost significantly greater amounts (p < 0.05) of total Kjeldahl N (TKN) and P (TKP) (849 g N ha(-1) and 266 g P ha(-1) for Iv; 623 g N ha(-1) and 192 g P ha(-1) for Ic) than did the Ic pattern. However, at 70 min, no significant differences in total losses were evident for TKN or TKP from either rainfall intensity pattern. In contrast, total cumulative losses of dissolved reactive P (DRP) and NO3-N were greatest for ST-Ic, followed by ST-Iv, CT-Ic, and CT-Iv in diminishing order (69 g DRP ha(-1) and 361 g NO3-N ha(-1); 37 g DRP ha(-1) and 133 g NO3-N ha(-1); 3 g DRP ha(-1) and 58 g NO3-N ha(-1); 1 g DRP ha(-1) and 49 g NO3-N ha(-1)). Results indicate that constant-rate rainfall simulations may overestimate the amount of dissolved nutrients lost to the environment in overland flow from cropping systems in loamy sand soils. We also found that CT treatments lost significantly greater amounts of TKN and TKP than ST treatments and in contrast, ST treatments lost significantly greater amounts of DRP and NO3-N than CT treatments. These results indicate that ST systems may be losing more soluble fractions than CT systems, but only a fraction the total N (33%) and total P (11%) lost through overland flow from CT systems.

Automated Root Tracking with "Root System Analyzer"

NASA Astrophysics Data System (ADS)

Schnepf, Andrea; Jin, Meina; Ockert, Charlotte; Bol, Roland; Leitner, Daniel

2015-04-01

Crucial factors for plant development are water and nutrient availability in soils. Thus, root architecture is a main aspect of plant productivity and needs to be accurately considered when describing root processes. Images of root architecture contain a huge amount of information, and image analysis helps to recover parameters describing certain root architectural and morphological traits. The majority of imaging systems for root systems are designed for two-dimensional images, such as RootReader2, GiA Roots, SmartRoot, EZ-Rhizo, and Growscreen, but most of them are semi-automated and involve mouse-clicks in each root by the user. "Root System Analyzer" is a new, fully automated approach for recovering root architectural parameters from two-dimensional images of root systems. Individual roots can still be corrected manually in a user interface if required. The algorithm starts with a sequence of segmented two-dimensional images showing the dynamic development of a root system. For each image, morphological operators are used for skeletonization. Based on this, a graph representation of the root system is created. A dynamic root architecture model helps to determine which edges of the graph belong to an individual root. The algorithm elongates each root at the root tip and simulates growth confined within the already existing graph representation. The increment of root elongation is calculated assuming constant growth. For each root, the algorithm finds all possible paths and elongates the root in the direction of the optimal path. In this way, each edge of the graph is assigned to one or more coherent roots. Image sequences of root systems are handled in such a way that the previous image is used as a starting point for the current image. The algorithm is implemented in a set of Matlab m-files. Output of Root System Analyzer is a data structure that includes for each root an identification number, the branching order, the time of emergence, the parent identification number, the distance between branching point to the parent root base, the root length, the root radius and the nodes that belong to each individual root path. This information is relevant for the analysis of dynamic root system development as well as the parameterisation of root architecture models. Here, we show results of Root System Analyzer applied to analyse the root systems of wheat plants grown in rhizotrons. Different treatments with respect to soil moisture and apatite concentrations were used to test the effects of those conditions on root system development. Photographs of the root systems were taken at high spatial and temporal resolution and root systems are automatically tracked.

Semi-commercial scale production of carrageenan plant growth promoter by E-beam technology

NASA Astrophysics Data System (ADS)

Abad, Lucille V.; Dean, Giuseppe Filam O.; Magsino, Gil L.; Dela Cruz, Rafael Miguel M.; Tecson, Mariel G.; Abella, Matt Ezekiel S.; Hizon, Mark Gil S.

2018-02-01

The plant growth promoter (PGP) effect of different formulations of gamma-irradiated carrageenan solutions were tested on rice by foliar spraying. The best formulation was produced in large quantity for field application. Multilocation trials of around 1600 ha rice field in different regions of the Philippines indicated increase in yield of an average of around 20%. Increased resistance to tungro virus was also noted. Likewise, there was extensive root growth, increase in number of tillers, and development of sturdy stems that prevented lodging of rice plant. E-beam irradiation of carrageenan PGP was also studied to increase its throughput of production. Degradation of carrageenan by e-beam irradiation is inhibited by the formation of crosslinks. Optimisation by addition of hydrogen peroxide to improve degradation is discussed. A continuous flow liquid handling system has been fabricated to increase throughput of the carrageenan PGP. Using the optimized parameters, the system can produce a volume of approximately 1700 L/h.

Phytotoxicity assessment on corn stover biochar, derived from fast pyrolysis, based on seed germination, early growth, and potential plant cell damage.

PubMed

Li, Yang; Shen, Fei; Guo, Haiyan; Wang, Zhanghong; Yang, Gang; Wang, Lilin; Zhang, Yanzong; Zeng, Yongmei; Deng, Shihuai

2015-06-01

The potential phytotoxicity of water extractable toxicants in a typical corn stover biochar, the product of fast pyrolysis, was investigated using an aqueous biochar extract on a soil-less bioassay with tomato plants. The biochar dosage of 0.0-16.0 g beaker(-1) resulted in an inverted U-shaped dose-response relationship between biochar doasage and seed germination/seedling growth. This indicated that tomato growth was slightly stimulated by low dosages of biochar and inhibited with higher dosages of biochar. Additionally, antioxidant enzyme activities in the roots and leaves were enhanced at lower dosages, but rapidly decreased with higher dosages of biochar. With the increased dosages of biochar, the malondialdehyde content in the roots and leaves increased, in addition with the observed morphology of necrotic root cells, suggesting that serious damage to tomato seedlings occurred. EC50 of root length inhibition occurred with biochar dosages of 9.2 g beaker(-1) (3.5th day) and 16.7 g beaker(-1) (11th day) (equivalent to 82.8 and 150.3 t ha(-1), respectively), which implied that toxicity to the early growth of tomato can potentially be alleviated as the plant grows.

The release profiles of intact and enzymatically digested hyaluronic acid from semisolid formulations using multi-layer membrane system.

PubMed

Alkrad, Jamal Alyoussef; Mrestani, Yahya; Neubert, Reinhard H H

2003-07-01

A multi-layer membrane system was used to measure in vitro release of hydrophilic macromolecules such as hyaluronic acid (HA) from semisolid formulations. One enzymatically digested HA-derivative with molecular mass of 22 kDa (HA-D) and 1200 kDa intact HA (HA) were incorporated into three semisolid formulations: water-containing hydrophilic ointment (WHO), amphiphilic cream (AC) and water-containing wool wax alcohol ointment (WWO). Because of the high hydrophilic properties of HA-D and HA, the artificial model membranes consisted of collodion as the matrix and glycerol as the hydrophilic acceptor phase. The area under the concentration-time curve and the mean dissolution time were used as a quantitative parameter to characterise the rate and extent of release in vitro. This study showed that the HA-D and HA release as hydrophilic substances from WHO was higher than both from AC and WWO. It was observed that 83% of HA-D1 was released from WHO after 2 h; in contrast, only 10% was released from 2% HA from the same vehicle during the same time. In conclusion, the in vitro availability of enzymatically digested HA-D was higher for WHO than for the other formulations, AC and WWO. Similarly, the availability of HA-D was higher than that of HA from the same formulations.

Role of the HaHOG1 MAP Kinase in Response of the Conifer Root and But Rot Pathogen (Heterobasidion annosum) to Osmotic and Oxidative Stress

PubMed Central

Raffaello, Tommaso; Keriö, Susanna; Asiegbu, Fred O.

2012-01-01

The basidiomycete Heterobasidion annosum (Fr.) Bref. s.l. is a filamentous white rot fungus, considered to be the most economically important pathogen of conifer trees. Despite the severity of the tree infection, very little is known about the molecular and biochemical aspects related to adaptation to abiotic stresses. In this study, the osmotic and oxidative tolerance as well as the role of the HaHOG1 Mitogen Activated Protein Kinase (MAPK) gene were investigated. The transcript levels of the yeast orthologues GPD1, HSP78, STL1, GRE2 and the ATPase pumps ENA1, PMR1, PMC1 known to have an important role in osmotolerance were also quantified under salt osmotic conditions. The HaHOG1 gene was used for a heterologous expression and functional study in the Saccharomyces cerevisiae Δhog1 strain. Moreover, the phosphorylation level of HaHog1p was studied under salt osmotic and oxidative stress. The result showed that H. annosum displayed a decreased growth when exposed to an increased concentration of osmotic and oxidative stressors. GPD1, HSP78, STL1 and GRE2 showed an induction already at 10 min after exposure to salt stress. Among the ATPase pumps studied, PMC1 was highly induced when the fungus was exposed to 0.2 M CaCl2 for 60 min. The heterologous expression of the HaHOG1 sequence in yeast confirmed that the gene is able to restore the osmotolerance and oxidative tolerance in the S. cerevisiae hog1Δ mutant strain. The HaHog1p was strongly phosphorylated in the presence of NaCl, KCl, H2O2 but not in the presence of CaCl2 and MgCl2. The GFP-HaHog1p fusion protein accumulated in the nuclei of the S. cerevisiae hog1Δ cells when exposed to high osmotic conditions but not under oxidative stress. These results provide the first insights about the response of H. annosum to osmotic and oxidative stress and elucidate the role of the HaHOG1 gene in such conditions. PMID:22319614

Real-Time Tracking the Synthesis and Degradation of Albumin in Complex Biological Systems with a near-Infrared Fluorescent Probe.

PubMed

Jin, Qiang; Feng, Lei; Zhang, Shui-Jun; Wang, Dan-Dan; Wang, Fang-Jun; Zhang, Yi; Cui, Jing-Nan; Guo, Wen-Zhi; Ge, Guang-Bo; Yang, Ling

2017-09-19

In this study, a novel fluorescent detection system for biological sensing of human albumin (HA) was developed on the basis of the pseudoesterase activity and substrate preference of HA. The designed near-infrared (NIR) fluorescent probe (DDAP) could be effectively hydrolyzed by HA, accompanied by significant changes in both color and fluorescence spectrum. The sensing mechanism was fully investigated by fluorescence spectroscopy, NMR, and mass spectra. DDAP exhibited excellent selectivity and sensitivity toward HA over a variety of human plasma proteins, hydrolases, and abundant biomolecules found in human body. The probe has been successfully applied to measure native HA in diluted plasma samples and the secreted HA in the hepatocyte culture supernatant. DDAP has also been used for fluorescence imaging of HA reabsorption in living renal cells, and the results show that the probe exhibits good cell permeability, low cytotoxicity and high imaging resolution. Furthermore, DDAP has been successfully used for real-time tracking the uptaking and degradation of albumin in ex vivo mouse kidney models for the first time. All these results clearly demonstrated that DDAP-based assay held great promise for real-time sensing and tracking HA in complex biological systems, which would be very useful for basic researches and clinical diagnosis of HA-associated diseases.

Reduction of copper phytotoxicity by liming: A study of the root anatomy of young vines (Vitis labrusca L.).

PubMed

Ambrosini, Vítor Gabriel; Rosa, Daniel José; Corredor Prado, Jenny Paola; Borghezan, Marcelo; Bastos de Melo, George Wellington; Fonsêca de Sousa Soares, Cláudio Roberto; Comin, Jucinei José; Simão, Daniela Guimarães; Brunetto, Gustavo

2015-11-01

Frequent applications of copper (Cu)-based fungicides on vines causes the accumulation of this metal in vineyard soils, which can cause toxicity in young vines. However, liming may reduce these toxic effects. The present study aimed to evaluate the effects of Cu toxicity on the root anatomy of young vines and the alleviation of Cu toxicity by lime applications to contaminated sandy soil. The treatments consisted of the addition of lime (0.0, 1.5 and 3.0 Mg ha(-1)) and two Cu concentrations (0 and 50 mg kg(-1)) to Typic Hapludalf soil. Young vines 'Niágara Branca' (Vitis labrusca L.) were obtained by micropropagation and cultivated for 70 days. The young vines grown with Cu and without liming presented a disorganized root structure; reduced root cap size; increased diameter (47%), cortex area (128%), vascular cylinder area (93%), and number of cortical layers and cells containing phenolic compounds (132%); and reduced root (41%), stem (44%) and leaf dry mass (21%) and height increase (55%). Moreover, Cu exposure reduced Ca concentrations (13%) and increased Cu concentrations (371%) in the roots. Liming, primarily with the highest tested dose, increased the soil pH (from 4.4 to 5.4-6.1), decreased the Cu concentration in the soil (extracted by CaCl2), increased the calcium (Ca) and magnesium (Mg) uptake by plants, prevented root anatomical changes and benefited young vine growth in soil with higher Cu concentrations. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

Origin of the Words Denoting Some of the Most Ancient Old World Pulse Crops and Their Diversity in Modern European Languages

PubMed Central

Mikić, Aleksandar

2012-01-01

This preliminary research was aimed at finding the roots in various Eurasian proto-languages directly related to pulses and giving the words denoting the same in modern European languages. Six Proto-Indo-European roots were indentified, namely arnk(')- (‘a leguminous plant’), *bhabh- (‘field bean’), * (‘a kernel of leguminous plant’, ‘pea’), ghArs- (‘a leguminous plant’), *kek- (‘pea’) and *lent- (‘lentil’). No Proto-Uralic root was attested save hypothetically *kača (‘pea’), while there were two Proto-Altaic roots, *bŭkrV (‘pea’) and * (‘lentil’). The Proto-Caucasianx root * denoted pea, while another one, *hōwł(ā) (‘bean’, ‘lentil’) and the Proto-Basque root *iłha-r (‘pea’, ‘bean’, ‘vetch’) could have a common Proto-Sino-Caucasian ancestor, *hVwłV (‘bean’) within the hypothetic Dené-Caucasian language superfamily. The Modern Maltese preserved the memory of two Proto-Semitic roots, *'adaš- (‘lentil’) and *pūl- (‘field bean’). The presented results prove that the most ancient Eurasian pulse crops were well-known and extensively cultivated by the ancestors of all modern European nations. The attested lexicological continuum witnesses the existence of a millennia-long links between the peoples of Eurasia to their mutual benefit. This research is meant to encourage interdisciplinary concerted actions between plant scientists dealing with crop evolution and biodiversity, archaeobotanists and language historians. PMID:22973458

Influence of summer sowing dates, N fertilization and irrigation on autumn VSP accumulation and dynamics of spring regrowth in alfalfa (Medicago sativa L.).

PubMed

Justes, Eric; Thiébeau, Pascal; Avice, Jean-Christophe; Lemaire, Gilles; Volenec, Jeffrey J; Ourry, Alain

2002-01-01

Herbage yield of alfalfa (Medicago sativa L.) depends on forage management or environmental conditions that change C and N resource acquisition, and endogenous plants factors such as root organic reserves and number of active meristems. The aim of this work is to study the influence of two sowing dates in summer (12 July or 9 August), N fertilization (0 or 100 kg ha(-1)) and/or irrigation applied during the first year of alfalfa establishment on (i) the accumulation of N organic reserves (soluble proteins and more specifically vegetative storage protein) in taproots during autumn, (ii) the number of crown axillary meristems present at the end of winter and (iii) the dynamics of spring shoot growth. Delaying the sowing date for one month reduced root growth and root N storage, especially vegetative storage proteins (VSP) during autumn. Irrespective of sowing dates, N fertilization did not affect root biomass, number of crown buds, total root N, root soluble protein or VSP concentrations. By contrast, water deficiency during alfalfa establishment in the early summer reduced both root growth and N reserve accumulation. When spring growth resumed, there is a significant linear relationship between leaf area development and soluble protein and VSP concentrations in taproots, and also the number of crown buds. The results showed that an early sowing date and adequate water status during the summer allowed alfalfa plants to accumulate N reserves by increasing taproot mass and soluble protein concentrations, especially VSPs. This resulted in rapid shoot regrowth rates the following spring.

Combination of cupric ion with hydroxylamine and hydrogen peroxide for the control of bacterial biofilms on RO membranes.

PubMed

Lee, Hye-Jin; Kim, Hyung-Eun; Lee, Changha

2017-03-01

Combinations of Cu(II) with hydroxylamine (HA) and hydrogen peroxide (H 2 O 2 ) (i.e., Cu(II)/HA, Cu(II)/H 2 O 2 , and Cu(II)/HA/H 2 O 2 systems) were investigated for the control of P. aeruginosa biofilms on reverse osmosis (RO) membranes. These Cu(II)-based disinfection systems effectively inactivated P. aeruginosa cells, exhibiting different behaviors depending on the state of bacterial cells (planktonic or biofilm) and the condition of biofilm growth and treatment (normal or pressurized condition). The Cu(II)/HA and Cu(II)/HA/H 2 O 2 systems were the most effective reagents for the inactivation of planktonic cells. However, these systems were not effective in inactivating cells in biofilms on the RO membranes possibly due to the interactions of Cu(I) with extracellular polymeric substances (EPS), where biofilms were grown and treated in center for disease control (CDC) reactors. Different from the results using CDC reactors, in a pressurized cross-flow RO filtration unit, the Cu(II)/HA/H 2 O 2 treatment significantly inactivated biofilm cells formed on the RO membranes, successfully recovering the permeate flux reduced by the biofouling. The pretreatment of feed solutions by Cu(II)/HA and Cu(II)/HA/H 2 O 2 systems (applied before the biofilm formation) effectively mitigated the permeate flux decline by preventing the biofilm growth on the RO membranes. Copyright © 2016 Elsevier Ltd. All rights reserved.

Coastal landforms and accumulation of mangrove peat increase carbon sequestration and storage

PubMed Central

Garcillán, Pedro P.

2016-01-01

Given their relatively small area, mangroves and their organic sediments are of disproportionate importance to global carbon sequestration and carbon storage. Peat deposition and preservation allows some mangroves to accrete vertically and keep pace with sea-level rise by growing on their own root remains. In this study we show that mangroves in desert inlets in the coasts of the Baja California have been accumulating root peat for nearly 2,000 y and harbor a belowground carbon content of 900–34,00 Mg C/ha, with an average value of 1,130 (± 128) Mg C/ha, and a belowground carbon accumulation similar to that found under some of the tallest tropical mangroves in the Mexican Pacific coast. The depth–age curve for the mangrove sediments of Baja California indicates that sea level in the peninsula has been rising at a mean rate of 0.70 mm/y (± 0.07) during the last 17 centuries, a value similar to the rates of sea-level rise estimated for the Caribbean during a comparable period. By accreting on their own accumulated peat, these desert mangroves store large amounts of carbon in their sediments. We estimate that mangroves and halophyte scrubs in Mexico’s arid northwest, with less than 1% of the terrestrial area, store in their belowground sediments around 28% of the total belowground carbon pool of the whole region. PMID:27035950

Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.

PubMed

Liu, Wei; Li, Qiwei; Wang, Yi; Wu, Ting; Yang, Yafei; Zhang, Xinzhong; Han, Zhenhai; Xu, Xuefeng

2017-09-23

Ethylene regulates the plant's response to stress caused by iron (Fe) deficiency. However, specific roles of ERF proteins in response to Fe deficiency remain poorly understood. Here, we investigated the role of ERF72 in response to iron deficiency in Arabidopsis thaliana. In this study, the levels of the ethylene response factor AtERF72 increased in leaves and roots induced under the iron deficient conditions. erf72 mutant plants showed increased growth compared to wild type (WT) when grown in iron deficient medium for 5 d. erf72 mutants had increased root H + velocity and the ferric reductase activity, and increase in the expression of the iron deficiency response genes iron-regulated transporter 1 (IRT1) and H + -ATPase (HA2) levels in iron deficient conditions. Compared to WT plants, erf72 mutants retained healthy chloroplast structure with significantly higher Fe and Mg content, and decreased chlorophyll degradation gene pheophorbide a oxygenase (PAO) and chlorophyllase (CLH1) expression when grown in iron deficient media. Yeast one-hybrid analysis showed that ERF72 could directly bind to the promoter regions of iron deficiency responses genes IRT1, HA2 and CLH1. Based on our results, we suggest that ethylene released from plants under iron deficiency stress can activate the expression of ERF72, which responds to iron deficiency in the negative regulation. Copyright © 2017 Elsevier Inc. All rights reserved.

Crop residue incorporation for increasing SOC stock. Is it worth it?

NASA Astrophysics Data System (ADS)

Pituello, Chiara; Berti, Antonio; Morari, Francesco

2015-04-01

In the last fifty years, soil organic carbon (SOC) in North-Eastern Italy decreased at rates ranging from 0.02 to 0.58 t ha/year as a consequence of the intensification and simplification of cropping systems. Most recently, the removal of crop residue for bioenergy production raises concerns about its potential impact on SOC evolution. Crop residue incorporation has been included in the Recommended Management Practices (RMPs) for climate change mitigation, however, several doubts still remain on its actual effectiveness. Indeed, long term effects of residue incorporation on SOC stocks have been studied by many authors with apparently contrasting findings. Thus, given the pivotal role played by SOC on ecosystem services, investigating the effects of residues incorporation on soil quality constitutes a key step towards understanding soil processes and will help establish a rationale bioenergy production policy. For this purpose, soil samples were taken from a long-term field experiment started in 1970, with three types of soil: sand, silt-loam and clay. The experiment design adopted implied a crop rotation including maize, wheat, and potatoes with only two types of residues management: incorporation and removal. The levels of nitrogen application were six (0, 50, 100, 200, 300, 400 kg ha-1) with a factorial combination with the residues management. Residue incorporation affected significantly the carbon stock within the profile (0-70cm), with an average increase in carbon content from 60 to 67 t C ha-1 in 42 years (0.16 t C ha-1 y-1). In clay and silt-loam soils the C stock varied within the whole profile, with an increase in the upper layer (0-20 cm) ranging from 29% (silt-loam) to 60% (clay soil) of the total increment. Conversely, in sand soil the effect was found only in the upper horizon, where the incorporation of residues increased SOC of only 1.9 t ha-1. This indicates that in sand soil the increase of C is mainly attributable to the direct effect of residues input, while in the other two soils the accumulation depends both on direct effect and root-C input due to the enhancement of crop growth. The effectiveness of residue incorporation strongly depends on the type of soil, a factor which should be considered by the future bioenergy production policy.

Sequence analysis, expression profiles and function of thioredoxin 2 and thioredoxin reductase 1 in resistance to nucleopolyhedrovirus in Helicoverpa armigera

PubMed Central

Zhang, Songdou; Li, Zhen; Nian, Xiaoge; Wu, Fengming; Shen, Zhongjian; Zhang, Boyu; Zhang, Qingwen; Liu, Xiaoxia

2015-01-01

The thioredoxin system, including NADPH, thioredoxin (Trx), and thioredoxin reductase (TrxR), plays significant roles in maintaining intracellular redox homeostasis and protecting organisms against oxidative damage. In this study, the characteristics and functions of H. armigera HaTrx2 and HaTrxR1 were identified. Sequence analysis showed that HaTrx2 and HaTrxR1 were both highly conserved and shared high sequence identity with other insect counterparts. The mRNA of HaTrx2 was expressed the highest in 5th instar 96 h and was mainly detected in heads and epidermis. The expression of HaTrxR1 was highly concentrated in 5th instar 72 h and 96 h, and higher in malpighian tube, midgut and hemocyte than other examined tissues. HaTrx2 and HaTrxR1 were markedly induced by various types of stress. HaTrx2- or HaTrxR1-knockdown increased ROS production in hemocytes and also increased the lipid damage in NPV infected H. armigera larvae. Furthermore, interference with expression of HaTrx2 or HaTrxR1 transcripts in H. armigera larvae resulted in increased sensitivity to NPV infection and shortened LT50 values. Our findings indicated that HaTrx2 and HaTrxR1 contribute to the susceptibility of H. armigera to NPV and also provided the theoretical basis for the in-depth study of insect thioredoxin system. PMID:26502992

Growth, yield and movement of phosphate nutrients in soybean on P fertilizer, straw mulch and difference of plant spacing

NASA Astrophysics Data System (ADS)

Hanum, C.

2018-02-01

Soybean is one of the plants that require much amounts of phosphate. P nutrient, microclimate modification and plant spacing arrangement is the efforts to improve grain yield. The objective of the research was to study the effect of P fertilization, mulching straw and plant spacing on growth, yield and movement of P nutrient on soybean. The study was conducted at Cengkeh Turi Binjai using factorial randomized block design with 3 factors. The first factors was P fertilizer 0, 100, and 200 kg/ha, the second factor was thickness of rice straw mulch 0 and 5 cm, and third factors was plant spacing 30 cm x 15 cm, 40 cm x 20 cm, and 50 cm x 25 cm. The results of the research showed that phosphate fertilizer (200 kg/ha) significantly increased levels of phosphate in the shoot. Plant spacing (50 cm x 25 cm) increased root volume. The interaction of phosphate fertilizer (200 kg/ha) and spacing (50 cm x 25 cm) increased the phosphate level by 93.33% in shoot. Plant spacing (50 cm x 25 cm) produced the largest of 100 grains weight as compared to other plant spacing.

Effect of chemical and mechanical weed control on cassava yield, soil quality and erosion under cassava cropping system

NASA Astrophysics Data System (ADS)

Islami, Titiek; Wisnubroto, Erwin; Utomo, Wani

2016-04-01

Three years field experiments were conducted to study the effect of chemical and mechanical weed control on soil quality and erosion under cassava cropping system. The experiment were conducted at University Brawijaya field experimental station, Jatikerto, Malang, Indonesia. The experiments were carried out from 2011 - 2014. The treatments consist of three cropping system (cassava mono culture; cassava + maize intercropping and cassava + peanut intercropping), and two weed control method (chemical and mechanical methods). The experimental result showed that the yield of cassava first year and second year did not influenced by weed control method and cropping system. However, the third year yield of cassava was influence by weed control method and cropping system. The cassava yield planted in cassava + maize intercropping system with chemical weed control methods was only 24 t/ha, which lower compared to other treatments, even with that of the same cropping system used mechanical weed control. The highest cassava yield in third year was obtained by cassava + peanuts cropping system with mechanical weed control method. After three years experiment, the soil of cassava monoculture system with chemical weed control method possessed the lowest soil organic matter, and soil aggregate stability. During three years of cropping soil erosion in chemical weed control method, especially on cassava monoculture, was higher compared to mechanical weed control method. The soil loss from chemical control method were 40 t/ha, 44 t/ha and 54 t/ha for the first, second and third year crop. The soil loss from mechanical weed control method for the same years was: 36 t/ha, 36 t/ha and 38 t/ha. Key words: herbicide, intercropping, soil organic matter, aggregate stability.

Towards a balanced performance measurement system in a public health care organization.

PubMed

Yuen, Peter P; Ng, Artie W

2012-01-01

This article attempts to devise an integrated performance measurement framework to assess the Hong Kong Hospital Authority (HA) management system by harnessing previous performance measurement systems. An integrated evaluative framework based on the balanced score card (BSC) was developed and applied using the case study method and longitudinal data to evaluate the HA's performance management system. The authors unveil evolving HA performance indicators (P1). Despite the HA staffs explicit quality emphasis, cost control remains the primary focus in their performance measurements. RESEARCH LHNITATIONS/IMPLICATIONS: Data used in this study are from secondary sources, disclosed mostly by HA staff. This study shows public sector staff often attach too much importance to cost control and easily measurable activities at the expense of quality and other less easily measurable attributes'. A balanced performance measurement system, linked to health targets, with a complementary budgeting process that supports pertinent resource allocation is yet to be implemented in Hong Kong's public hospitals.

Peri-implant and systemic effects of high-/low-affinity bisphosphonate-hydroxyapatite composite coatings in a rabbit model with peri-implant high bone turnover

PubMed Central

2012-01-01

Background Hydroxyapatite (HA) coatings composed with bisphosphonates (BPs) which have high mineral-binding affinities have been confirmed to successfully enhance implant stability. However, few previous studies focused on HA coatings composed with low-affinity BPs or on systemic effects of locally released BPs. Methods In this long-term study, we developed two kinds of BP-HA composite coatings using either high-affinity BP (alendronate, ALN) or low-affinity BP (risedronate, RIS). Thirty-six rabbits were divided into three groups according to different coating applications (group I: HA, group II: ALN-HA, and group III: RIS-HA). Implants were inserted into the proximal region of the medullary cavity of the left tibiay. At insertion, 2 × 108 wear particles were injected around implants to induce a peri-implant high bone turnover environment. Both local (left tibias) and systemic (right tibias and lumbar vertebrae) inhibitory effect on bone resorption were compared, including bone-implant integration, bone architecture, bone mineral density (BMD), implant stability, and serum levels of bone turnover markers. Results The results indicated that ALN-HA composite coating, which could induce higher bone-implant contact (BIC) ratio, bone mass augmentation, BMD, and implant stability in the peri-implant region, was more potent on peri-implant bone, while RIS-HA composite coating, which had significant systemic effect, was more potent on non-peri-implant bone, especially lumbar vertebrae. Conclusions It is instructive and meaningful to further clinical studies that we could choose different BP-HA composite coatings according to the patient’s condition. PMID:22686414

Molecular dynamics simulations for the examination of mechanical properties of hydroxyapatite/ poly α-n-butyl cyanoacrylate under additive manufacturing.

PubMed

Wang, Yanen; Wei, Qinghua; Pan, Feilong; Yang, Mingming; Wei, Shengmin

2014-01-01

Molecular dynamics (MD) simulations emerged to be a helpful tool in the field of material science. In rapid prototyping artificial bone scaffolds process, the binder spraying volume and mechanism are very important for bone scaffolds mechanical properties. In this study, we applied MD simulations to investigating the binding energy of α-n-butyl cyanoacrylate (NBCA) on Hydroxyapatite (HA) crystallographic planes (001, 100 and 110), and to calculating and analyzing the mechanical properties and radial distribution function of the HA(110)/NBCA mixed system. The simulation results suggested that HA (110) has the highest binding energy with NBCA owing to the high planar atom density, and the mechanical properties of HA(110)/NBCA mixed system is stronger than pure HA system. Therefore, the multi-grade strength bone scaffold could be fabricated through spraying various volume NBCA binders during 3D printing process. By calculating the radial distribution function of HA(110)/NBCA, the essence of the interface interaction were successfully elucidated. The forming situation parameters can be referred to calculation results. There exists a strong interaction between HA crystallographic plane (110) and NBCA, it is mainly derived from the hydrogen bonds between O atoms which connect with C atoms of NBCA and H atoms in HA crystal. Furthermore, a strong adsorption effect can be demonstrated between HA and NBCA.

Root architecture simulation improves the inference from seedling root phenotyping towards mature root systems

PubMed Central

Zhao, Jiangsan; Rewald, Boris; Leitner, Daniel; Nagel, Kerstin A.; Nakhforoosh, Alireza

2017-01-01

Abstract Root phenotyping provides trait information for plant breeding. A shortcoming of high-throughput root phenotyping is the limitation to seedling plants and failure to make inferences on mature root systems. We suggest root system architecture (RSA) models to predict mature root traits and overcome the inference problem. Sixteen pea genotypes were phenotyped in (i) seedling (Petri dishes) and (ii) mature (sand-filled columns) root phenotyping platforms. The RSA model RootBox was parameterized with seedling traits to simulate the fully developed root systems. Measured and modelled root length, first-order lateral number, and root distribution were compared to determine key traits for model-based prediction. No direct relationship in root traits (tap, lateral length, interbranch distance) was evident between phenotyping systems. RootBox significantly improved the inference over phenotyping platforms. Seedling plant tap and lateral root elongation rates and interbranch distance were sufficient model parameters to predict genotype ranking in total root length with an RSpearman of 0.83. Parameterization including uneven lateral spacing via a scaling function substantially improved the prediction of architectures underlying the differently sized root systems. We conclude that RSA models can solve the inference problem of seedling root phenotyping. RSA models should be included in the phenotyping pipeline to provide reliable information on mature root systems to breeding research. PMID:28168270

Production of trichodiene by Trichoderma harzianum alters the perception of this biocontrol strain by plants and antagonized fungi.

PubMed

Malmierca, Mónica G; McCormick, Susan P; Cardoza, Rosa E; Alexander, Nancy J; Monte, Enrique; Gutiérrez, Santiago

2015-08-01

Trichothecenes are phytotoxic sesquiterpenic mycotoxins that can act as virulence factors in plant diseases. Harzianum A (HA) is a non-phytotoxic trichothecene produced by Trichoderma arundinaceum. The first step in HA biosynthesis is the conversion of farnesyl diphosphate to trichodiene (TD), a volatile organic compound (VOC), catalysed by a sesquiterpene synthase encoded by the tri5 gene. Expression of tri5 in the biocontrol strain Trichoderma harzianum CECT 2413 resulted in production of TD in parallel with a reduction of ergosterol biosynthesis and an unexpected increase in the level of squalene. Transformants expressing tri5 displayed low chitinase activity and induced expression of Botrytis cinerea BOT genes, although their total antagonistic potential against phytopathogenic fungi was not reduced. VOCs released by the tri5-transformant induced expression of tomato defence genes related to salicylic acid (SA), and TD itself strongly induced the expression of SA-responsive genes and reduced the development of lateral roots. Together, these results suggest that TD acts as a signalling VOC in the interactions of Trichoderma with plants and other microorganisms by modulating the perception of this fungus to a given environment. Moreover, the TD ability to induce systemic defences indicates that complex trichothecene structures may not be necessary for inducing such responses. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Transport features of nano-hydroxylapatite (n-HA) embedded silicone rubber (SR) systems: influence of SR/n-HA interaction, degree of reinforcement and morphology.

PubMed

M, Bindu; G, Unnikrishnan

2017-09-27

We report the transport characteristics of silicone rubber/nano-hydroxylapatite (SR/n-HA) systems at room temperature with reference to the effects of n-HA loading, morphology and penetrant nature, using toluene, xylene, ethyl acetate and butyl acetate in the liquid phase and methanol, ethanol, 1-propanol, 2-propanol and butanol in the vapour phase as probe molecules. The interaction between the n-HA particles and SR matrix has been confirmed by FTIR analysis. As the n-HA content in the SR matrix increased, the penetrant uptake has been found to decrease. The observations have been correlated with the density and void content of the systems. Scanning electron microscopy images have been found to be complementary to the observed transport features. The reinforcement effect of n-HA particles on the SR matrix has been verified by Kraus equation. Molecular mass between the cross links has been observed to decrease with an increase in n-HA loading. The results have been compared with affine, phantom network, parallel, series and Maxwell models. The transport data have been complemented by observations on biological fluid uptake with urea, d-glucose, KI, saline water, phosphate buffer and artificial urine as the media.

Hypothalamic Tuberomammillary Nucleus Neurons: Electrophysiological Diversity and Essential Role in Arousal Stability.

PubMed

Fujita, Akie; Bonnavion, Patricia; Wilson, Miryam H; Mickelsen, Laura E; Bloit, Julien; de Lecea, Luis; Jackson, Alexander C

2017-09-27

Histaminergic (HA) neurons, found in the posterior hypothalamic tuberomammillary nucleus (TMN), extend fibers throughout the brain and exert modulatory influence over numerous physiological systems. Multiple lines of evidence suggest that the activity of HA neurons is important in the regulation of vigilance despite the lack of direct, causal evidence demonstrating its requirement for the maintenance of arousal during wakefulness. Given the strong correlation between HA neuron excitability and behavioral arousal, we investigated both the electrophysiological diversity of HA neurons in brain slices and the effect of their acute silencing in vivo in male mice. For this purpose, we first validated a transgenic mouse line expressing cre recombinase in histidine decarboxylase-expressing neurons ( Hdc -Cre) followed by a systematic census of the membrane properties of both HA and non-HA neurons in the ventral TMN (TMNv) region. Through unsupervised hierarchical cluster analysis, we found electrophysiological diversity both between TMNv HA and non-HA neurons, and among HA neurons. To directly determine the impact of acute cessation of HA neuron activity on sleep-wake states in awake and behaving mice, we examined the effects of optogenetic silencing of TMNv HA neurons in vivo We found that acute silencing of HA neurons during wakefulness promotes slow-wave sleep, but not rapid eye movement sleep, during a period of low sleep pressure. Together, these data suggest that the tonic firing of HA neurons is necessary for the maintenance of wakefulness, and their silencing not only impairs arousal but is sufficient to rapidly and selectively induce slow-wave sleep. SIGNIFICANCE STATEMENT The function of monoaminergic systems and circuits that regulate sleep and wakefulness is often disrupted as part of the pathophysiology of many neuropsychiatric disorders. One such circuit is the posterior hypothalamic histamine (HA) system, implicated in supporting wakefulness and higher brain function, but has been difficult to selectively manipulate owing to cellular heterogeneity in this region. Here we use a transgenic mouse to interrogate both the characteristic firing properties of HA neurons and their specific role in maintaining wakefulness. Our results demonstrate that the acute, cell type-specific silencing of HA neurons during wakefulness is sufficient to not only impair arousal but to rapidly and selectively induce slow-wave sleep. This work furthers our understanding of HA-mediated mechanisms that regulate behavioral arousal. Copyright © 2017 the authors 0270-6474/17/379575-19$15.00/0.

Hypothalamic Tuberomammillary Nucleus Neurons: Electrophysiological Diversity and Essential Role in Arousal Stability

PubMed Central

Fujita, Akie; Mickelsen, Laura E.; Bloit, Julien

2017-01-01

Histaminergic (HA) neurons, found in the posterior hypothalamic tuberomammillary nucleus (TMN), extend fibers throughout the brain and exert modulatory influence over numerous physiological systems. Multiple lines of evidence suggest that the activity of HA neurons is important in the regulation of vigilance despite the lack of direct, causal evidence demonstrating its requirement for the maintenance of arousal during wakefulness. Given the strong correlation between HA neuron excitability and behavioral arousal, we investigated both the electrophysiological diversity of HA neurons in brain slices and the effect of their acute silencing in vivo in male mice. For this purpose, we first validated a transgenic mouse line expressing cre recombinase in histidine decarboxylase-expressing neurons (Hdc-Cre) followed by a systematic census of the membrane properties of both HA and non-HA neurons in the ventral TMN (TMNv) region. Through unsupervised hierarchical cluster analysis, we found electrophysiological diversity both between TMNv HA and non-HA neurons, and among HA neurons. To directly determine the impact of acute cessation of HA neuron activity on sleep–wake states in awake and behaving mice, we examined the effects of optogenetic silencing of TMNv HA neurons in vivo. We found that acute silencing of HA neurons during wakefulness promotes slow-wave sleep, but not rapid eye movement sleep, during a period of low sleep pressure. Together, these data suggest that the tonic firing of HA neurons is necessary for the maintenance of wakefulness, and their silencing not only impairs arousal but is sufficient to rapidly and selectively induce slow-wave sleep. SIGNIFICANCE STATEMENT The function of monoaminergic systems and circuits that regulate sleep and wakefulness is often disrupted as part of the pathophysiology of many neuropsychiatric disorders. One such circuit is the posterior hypothalamic histamine (HA) system, implicated in supporting wakefulness and higher brain function, but has been difficult to selectively manipulate owing to cellular heterogeneity in this region. Here we use a transgenic mouse to interrogate both the characteristic firing properties of HA neurons and their specific role in maintaining wakefulness. Our results demonstrate that the acute, cell type-specific silencing of HA neurons during wakefulness is sufficient to not only impair arousal but to rapidly and selectively induce slow-wave sleep. This work furthers our understanding of HA-mediated mechanisms that regulate behavioral arousal. PMID:28874450

Analysis of CD44-Hyaluronan Interactions in an Artificial Membrane System

PubMed Central

Wolny, Patricia M.; Banerji, Suneale; Gounou, Céline; Brisson, Alain R.; Day, Anthony J.; Jackson, David G.; Richter, Ralf P.

2010-01-01

CD44 is a major cell surface receptor for the large polydisperse glycosaminoglycan hyaluronan (HA). Binding of the long and flexible HA chains is thought to be stabilized by the multivalent nature of the sugar molecule. In addition, high and low molecular weight forms of HA provoke distinct proinflammatory and anti-inflammatory effects upon binding to CD44 and can deliver either proliferative or antiproliferative signals in appropriate cell types. Despite the importance of such interactions, however, neither the stoichiometry of multivalent HA binding at the cell surface nor the molecular basis for functional distinction between different HA size categories is understood. Here we report on the design of a supported lipid bilayer system that permits quantitative analysis of multivalent binding through presentation of CD44 in a stable, natively oriented manner and at controlled density. Using this system in combination with biophysical techniques, we show that the amount of HA binding to bilayers that are densely coated with CD44 increases as a function of HA size, with half-maximal saturation at ∼30 kDa. Moreover, reversible binding was confined to the smaller HA species (molecular weight of ≤10 kDa), whereas the interaction was essentially irreversible with larger polymers. The amount of bound HA decreased with decreasing receptor surface density, but the stability of binding was not affected. From a physico-chemical perspective, the binding properties of HA share many similarities with the typical behavior of a flexible polymer as it adsorbs onto a homogeneously attractive surface. These findings provide new insight into the multivalent nature of CD44-HA interactions and suggest a molecular basis for the distinct biological properties of different size fractions of hyaluronan. PMID:20663884

Temperature and magnetic field responsive hyaluronic acid particles with tunable physical and chemical properties

NASA Astrophysics Data System (ADS)

Ekici, Sema; Ilgin, Pinar; Yilmaz, Selahattin; Aktas, Nahit; Sahiner, Nurettin

2011-01-01

We report the preparation and characterization of thiolated-temperature-responsive hyaluronic acid-cysteamine-N-isopropyl acrylamide (HA-CYs-NIPAm) particles and thiolated-magnetic-responsive hyaluronic acid (HA-Fe-CYs) particles. Linear hyaluronic acid (HA) crosslinked with divinyl sulfone as HA particles was prepared using a water-in-oil micro emulsion system which were then oxidized HA-O with NaIO4 to develop aldehyde groups on the particle surface. HA-O hydrogel particles were then reacted with cysteamine (CYs) which interacted with aldehydes on the HA surface to form HA particles with cysteamine (HA-CYs) functionality on the surface. HA-CYs particles were further exposed to radical polymerization with NIPAm to obtain temperature responsive HA-CYs-NIPAm hydrogel particles. To acquire magnetic field responsive HA composites, magnetic iron particles were included in HA to form HA-Fe during HA particle preparation. HA-Fe hydrogel particles were also chemically modified. The prepared HA-CYs-NIPAm demonstrated temperature dependent size variations and phase transition temperature. HA-CYs-NIPAm and HA-Fe-CYs particles can be used as drug delivery vehicles. Sulfamethoxazole (SMZ), an antibacterial drug, was used as a model drug for temperature-induced release studies from these particles.

Grain Yield and Quality of Foxtail Millet (Setaria italica L.) in Response to Tribenuron-Methyl.

PubMed

Ning, Na; Yuan, Xiangyang; Dong, Shuqi; Wen, Yinyuan; Gao, Zhenpan; Guo, Meijun; Guo, Pingyi

2015-01-01

Foxtail millet (Setaria italica L.) is cultivated around the world for human and animal consumption. There is no suitable herbicide available for weed control in foxtail millet fields during the post-emergence stage. In this study, we investigated the effect and safety of the post-emergence herbicide tribenuron-methyl (TBM) on foxtail millet in terms of grain yield and quality using a split-plot field design. Field experiments were conducted using two varieties in 2013 and 2014, i.e., high-yielding hybrid Zhangzagu 10 and high-quality conventional Jingu 21. TBM treatments at 11.25 to 90 g ai ha(-1) reduced root and shoot biomass and grain yield to varying degrees. In each of the two years, grain yield declined by 50.2% in Zhangzagu 10 with a herbicide dosage of 45 g ai ha(-1) and by 45.2% in Jingu 21 with a herbicide dosage of 22.5 g ai ha(-1) (recommended dosage). Yield reduction was due to lower grains per panicle, 1000-grain weight, panicle length, and panicle diameter. Grain yield was positively correlated with grains per panicle and 1000-grain weight, but not with panicles ha(-1). With respect to grain protein content at 22.5 g ai ha(-1,) Zhangzagu 10 was similar to the control, whereas Jingu 21 was markedly lower. An increase in TBM dosage led to a decrease in grain Mn, Cu, Fe, and Zn concentrations. In conclusion, the recommended dosage of TBM was relatively safe for Zhangzagu 10, but not for Jingu 21. Additionally, the hybrid variety Zhangzagu 10 had a greater tolerance to TBM than the conventional variety Jingu 21.

Effects of seabird nitrogen input on biomass and carbon accumulation after 50 years of primary succession on a young volcanic island, Surtsey

NASA Astrophysics Data System (ADS)

Leblans, N. I. W.; Sigurdsson, B. D.; Roefs, P.; Thuys, R.; Magnússon, B.; Janssens, I. A.

2014-05-01

What happens during primary succession after the first colonizers have occupied a pristine surface largely depends on how they ameliorate living conditions for other species. For vascular plants the onset of soil development and associated increase in nutrient (mainly nitrogen, N) and water availability is especially important. Here, we report the relation between N accumulation and biomass- and ecosystem carbon (C) stocks in a 50 year old volcanic island, Surtsey, in Iceland, where N stocks are still exceptionally low. However, 27 year old seagull colony on the island provided nutrient-enriched areas, which enabled us to assess the relationship between N stock and biomass- and ecosystem C stocks across a much larger range in N stock. Further, we compared areas on shallow and deep tephra sands as we expected that deep-rooted systems would be more efficient in retaining N. The sparsely vegetated area outside the colony was more efficient in N retention than we expected and had accumulated 0.7 kg N ha-1 yr-1, which was ca. 60% of the estimated N input rate from wet deposition. The seagulls have added, on average, 47 kg N ha-1 yr-1, which induced a shift from belowground to aboveground in ecosystem N and C stocks and doubled the ecosystem "N use efficiency", determined as the ratio of biomass and C storage per unit N input. Soil depth did not significantly affect total N stocks, which suggests a high N retention potential. Both total ecosystem biomass and C stocks were strongly correlated with N stock inside the colony, which indicated the important role of N during the first steps of primary succession. Inside the colony, the ecosystem biomass C stocks (17-27 kg C ha-1) had reached normal values for grasslands, while the soil organic carbon stocks (SOC; 4-10 kg C ha-1) were only a fraction of normal grassland values. Thus, it will take a long time until the SOC stock reaches equilibrium with the current primary production; during which conditions for new colonists may change.

Spatial assessment of soil organic carbon and physicochemical properties in a horticultural orchard at arid zone of India using geostatistical approaches.

PubMed

Singh, Akath; Santra, Priyabrata; Kumar, Mahesh; Panwar, Navraten; Meghwal, P R

2016-09-01

Soil organic carbon (SOC) is a major indicator of long-term sustenance of agricultural production system. Apart from sustaining productivity, SOC plays a crucial role in context of climate change. Keeping in mind these potentials, spatial variation of SOC contents of a fruit orchard comprising several arid fruit plantations located at arid region of India is assessed in this study through geostatistical approaches. For this purpose, surface and subsurface soil samples from 175 locations from a fruit orchard spreading over 14.33 ha area were collected along with geographical coordinates. SOC content and soil physicochemical properties of collected soil samples were determined followed by geostatistical analysis for mapping purposes. Average SOC stock density of the orchard was 14.48 Mg ha(-1) for 0- to 30-cm soil layer ranging from 9.01 Mg ha(-1) in Carissa carandas to 19.52 Mg ha(-1) in Prosopis cineraria block. Range of spatial variation of SOC content was found about 100 m, while two other soil physicochemical properties, e.g., pH and electrical conductivity (EC) also showed similar spatial trend. This indicated that minimum sampling distance for future SOC mapping programme may be kept lower than 100 m for better accuracy. Ordinary kriging technique satisfactorily predicted SOC contents (in percent) at unsampled locations with root-mean-squared residual (RMSR) of 0.35-0.37. Co-kriging approach was found slightly superior (RMSR = 0.26-0.28) than ordinary kriging for spatial prediction of SOC contents because of significant correlations of SOC contents with pH and EC. Uncertainty of SOC estimation was also presented in terms of 90 % confidence interval. Spatial estimates of SOC stock through ordinary kriging or co-kriging approach were also found with low uncertainty of estimation than non-spatial estimates, e.g., arithmetic averaging approach. Among different fruit block plantations of the orchard, the block with Prosopis cineraria ('khejri') has higher SOC stock density than others.

Root architecture simulation improves the inference from seedling root phenotyping towards mature root systems.

PubMed

Zhao, Jiangsan; Bodner, Gernot; Rewald, Boris; Leitner, Daniel; Nagel, Kerstin A; Nakhforoosh, Alireza

2017-02-01

Root phenotyping provides trait information for plant breeding. A shortcoming of high-throughput root phenotyping is the limitation to seedling plants and failure to make inferences on mature root systems. We suggest root system architecture (RSA) models to predict mature root traits and overcome the inference problem. Sixteen pea genotypes were phenotyped in (i) seedling (Petri dishes) and (ii) mature (sand-filled columns) root phenotyping platforms. The RSA model RootBox was parameterized with seedling traits to simulate the fully developed root systems. Measured and modelled root length, first-order lateral number, and root distribution were compared to determine key traits for model-based prediction. No direct relationship in root traits (tap, lateral length, interbranch distance) was evident between phenotyping systems. RootBox significantly improved the inference over phenotyping platforms. Seedling plant tap and lateral root elongation rates and interbranch distance were sufficient model parameters to predict genotype ranking in total root length with an RSpearman of 0.83. Parameterization including uneven lateral spacing via a scaling function substantially improved the prediction of architectures underlying the differently sized root systems. We conclude that RSA models can solve the inference problem of seedling root phenotyping. RSA models should be included in the phenotyping pipeline to provide reliable information on mature root systems to breeding research. © The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Probing vocal fold fibroblast response to hyaluronan in 3D contexts.

PubMed

Munoz-Pinto, Dany J; Jimenez-Vergara, Andrea Carolina; Gelves, L Marcela; McMahon, Rebecca E; Guiza-Arguello, Viviana; Hahn, Mariah S

2009-11-01

A number of treatments are being investigated for vocal fold (VF) scar, including designer implants. The aim of the present study was to validate a 3D model system for probing the effects of various bioactive moieties on VF fibroblast (VFF) behavior toward rational implant design. We selected poly(ethylene glycol) diacrylate (PEGDA) hydrogels as our base-scaffold due to their broadly tunable material properties. However, since cells encapsulated in PEGDA hydrogels are generally forced to take on rounded/stellate morphologies, validation of PEGDA gels as a 3D VFF model system required that the present work directly parallel previous studies involving more permissive scaffolds. We therefore chose to focus on hyaluronan (HA), a polysaccharide that has been a particular focus of the VF community. Toward this end, porcine VFFs were encapsulated in PEGDA hydrogels containing consistent levels of high Mw HA (HA(HMW)), intermediate Mw HA (HA(IMW)), or the control polysaccharide, alginate, and cultured for 7 and 21 days. HA(HMW) promoted sustained increases in active ERK1/2 relative to HA(IMW). Furthermore, VFFs in HA(IMW) gels displayed a more myofibroblast-like phenotype, higher elastin production, and greater protein kinase C (PkC) levels at day 21 than VFFs in HA(HMW) and alginate gels. The present results are in agreement with a previous 3D study of VFF responses to HA(IMW) relative to alginate in collagen-based scaffolds permissive of cell elongation, indicating that PEGDA hydrogels may serve as an effective 3D model system for probing at least certain aspects of VFF behavior. Copyright 2009 Wiley Periodicals, Inc.

Colonization and community structure of arbuscular mycorrhizal fungi in maize roots at different depths in the soil profile respond differently to phosphorus inputs on a long-term experimental site.

PubMed

Wang, Chao; White, Philip J; Li, Chunjian

2017-05-01

Effects of soil depth and plant growth stages on arbuscular mycorrhizal fungal (AMF) colonization and community structure in maize roots and their potential contribution to host plant phosphorus (P) nutrition under different P-fertilizer inputs were studied. Research was conducted on a long-term field experiment over 3 years. AMF colonization was assessed by AM colonization rate and arbuscule abundances and their potential contribution to host P nutrition by intensity of fungal alkaline phosphatase (ALP)/acid phosphatase (ACP) activities and expressions of ZmPht1;6 and ZmCCD8a in roots from the topsoil and subsoil layer at different growth stages. AMF community structure was determined by specific amplification of 18S rDNA. Increasing P inputs up to 75-100 kg ha -1  yr -1 increased shoot biomass and P content but decreased AMF colonization and interactions between AMF and roots. AM colonization rate, intensity of fungal ACP/ALP activities, and expression of ZmPht1;6 in roots from the subsoil were greater than those from topsoil at elongation and silking but not at the dough stage when plants received adequate or excessive P inputs. Neither P input nor soil depth influenced the number of AMF operational taxonomic units (OTUs) present in roots, but P-fertilizer input, in particular, influenced community composition and relative AMF abundance. In conclusion, although increasing P inputs reduce AMF colonization and influence AMF community structure, AMF can potentially contribute to plant P nutrition even in well-fertilized soils, depending on the soil layer in which roots are located and the growth stage of host plants.

Sewage sludge used as organic manure in Moroccan sunflower culture: Effects on certain soil properties, growth and yield components.

PubMed

Mohamed, Bourioug; Mounia, Krouna; Aziz, Abouabdillah; Ahmed, Harraq; Rachid, Bouabid; Lotfi, Aleya

2018-06-15

The wastewater treatment and sludge production sectors in Morocco are recent. Considered as waste, no management strategy for sewage sludge (SS) has been implemented. Thus, its disposal definitely represents a major environmental problem since sludge is either incinerated, used as landfill or simply deposited near wastewater treatment plants. The objective of this study was to determine the effects of dehydrated SS on certain soil properties (pH, electrical conductivity (EC), Mineral nitrogen, available phosphate P 2 O 5 , and soluble potassium K 2 O), and also on growth and yield components of the sunflower (Helianthus annuus L.). An experiment was conducted using six treatment rates (0; 0 + NPK; 15; 30; 60 and 120 t ha -1 ). The results showed that soil pH was significantly affected by SS, becoming less alkaline compared to the control, while electrical conductivity increased significantly when the applied doses were above 30 t ha -1 . Also, a significant enrichment in mineral N and available phosphorus was detected in amended soil. However, no differences were found between pots having received the mineral fertilization and the SS at 15 t ha -1 . Stem height growth of the sunflower seedlings receiving SS increased significantly compared to the two controls. For both the aerial and root parts, significant increases in dry biomass accumulation were observed compared to the unamended plants. Net CO 2 assimilation (A n ) increased, while stomatal conductance (g sw ) and transpiration rates (T r ) decreased with increasing SS rates. SS application at 15 t ha -1 presented similar values of the yield components compared to plants fertilized chemically. However, grain yield (in quintals ha -1 ) was noted to be 2.4, 5 and 8 times higher in treatments receiving SS respectively at the rate of 30, 60 and 120 t ha -1 . Copyright © 2018 Elsevier B.V. All rights reserved.

Impact of Variety and Agronomic Factors on Crude Protein and Total Lysine in Chicory; N(ε)-Carboxymethyl-lysine-Forming Potential during Drying and Roasting.

PubMed

Loaëc, Grégory; Niquet-Léridon, Céline; Henry, Nicolas; Jacolot, Philippe; Jouquand, Céline; Janssens, Myriam; Hance, Philippe; Cadalen, Thierry; Hilbert, Jean-Louis; Desprez, Bruno; Tessier, Frédéric J

2015-12-02

During the heat treatment of coffee and its substitutes some compounds potentially deleterious to health are synthesized by the Maillard reaction. Among these, N(ε)-carboxymethyl-lysine (CML) was detected at high levels in coffee substitutes. The objective of this study was to evaluate the impact of changes in agricultural practice on the lysine content present in chicory roots and try to limit CML formation during roasting. Of the 24 varieties analyzed, small variations in lysine content were observed, 213 ± 8 mg/100 g dry matter (DM). The formation of lysine tested in five commercial varieties was affected by the nitrogen treatment with mean levels of 176 ± 2 mg/100 g DM when no fertilizer was added and 217 ± 7 mg/100 g DM with a nitrogen supply of 120 kg/ha. The lysine content of fresh roots was significantly correlated to the concentration of CML formed in roasted roots (r = 0.51; p < 0.0001; n = 76).

Evaluation of a Biostimulant (Pepton) Based in Enzymatic Hydrolyzed Animal Protein in Comparison to Seaweed Extracts on Root Development, Vegetative Growth, Flowering, and Yield of Gold Cherry Tomatoes Grown under Low Stress Ambient Field Conditions

PubMed Central

Polo, Javier; Mata, Pedro

2018-01-01

The objectives of this experiment were to determine the effects of different application rates of an enzyme hydrolyzed animal protein biostimulant (Pepton) compared to a standard application rate of a biostimulant derived from seaweed extract (Acadian) on plant growth parameters and yield of gold cherry tomatoes (Solanum lycopersicum L.). Biostimulant treatments were applied starting at 15 days after transplant and every 2 weeks thereafter for a total of 5 applications. One treatment group received no biostimulant (Control). Three treatment groups (Pepton-2, Pepton-3, Pepton-4) received Pepton at different application rates equivalent to 2, 3, or 4 kg/ha applied by foliar (first 2 applications) and by irrigation (last 3 applications). Another treatment group (Acadian) received Acadian at 1.5 L/ha by irrigation for all five applications. All groups received the regular fertilizer application for this crop at transplantation, flowering, and fruiting periods. There were four plots per treatment group. Each plot had a surface area of 21 m2 that consisted of two rows that were 7 m long and 1.5 m wide. Plant height, stem diameter, distance from head to bouquet flowering, fruit set distance between the entire cluster and cluster flowering fruit set, leaf length, and number of leaves per plant was recorded for 20 plants (5 plants per plot) at 56 and 61 days after the first application. Root length and diameter of cherry tomatoes were determined at harvest from 20 randomly selected plants. Harvesting yield per plot was registered and production per hectare was calculated. Both biostimulants improved (P < 0.05) all vegetative parameters compared with the control group. There was a positive linear (P < 0.001) effect of Pepton application rate for all parameters. The calculated yield was 7.8 and 1 Ton/ha greater that represent 27 and 2.9% higher production for Pepton applied at 4 kg/ha compared to the control and to Acadian, respectively. In conclusion, Pepton was effective improving yield of gold cherry tomatoes under the low stress ambient growing conditions of this experiment. Probably short-chain peptides present in Pepton are involved in endogenous hormones and metabolic mediators that could explain the results obtained in this study. PMID:29403513

Carbon stocks and dynamics at different successional stages in an Afromontane tropical forest

NASA Astrophysics Data System (ADS)

Nyirambangutse, Brigitte; Zibera, Etienne; Uwizeye, Félicien K.; Nsabimana, Donat; Bizuru, Elias; Pleijel, Håkan; Uddling, Johan; Wallin, Göran

2017-03-01

As a result of different types of disturbance, forests are a mixture of stands at different stages of ecological succession. Successional stage is likely to influence forest productivity and carbon storage, linking the degree of forest disturbance to the global carbon cycle and climate. Although tropical montane forests are an important part of tropical forest ecosystems (ca. 8 %, elevation > 1000 m a.s.l.), there are still significant knowledge gaps regarding the carbon dynamics and stocks of these forests, and how these differ between early (ES) and late successional (LS) stages. This study examines the carbon (C) stock, relative growth rate (RGR) and net primary production (NPP) of ES and LS forest stands in an Afromontane tropical rainforest using data from inventories of quantitatively important ecosystem compartments in fifteen 0.5 ha plots in Nyungwe National Park in Rwanda. The total C stock was 35 % larger in LS compared to ES plots due to significantly larger above-ground biomass (AGB; 185 and 76 Mg C ha-1 in LS and ES plots), while the soil and root C stock (down to 45 cm depth in the mineral soil) did not significantly differ between the two successional stages (178 and 204 Mg C ha-1 in LS and ES plots). The main reasons for the difference in AGB were that ES trees had significantly lower stature and wood density compared to LS trees. However, ES and LS stands had similar total NPP (canopy, wood and roots of all plots ˜ 9.4 Mg C ha-1) due to counterbalancing effects of differences in AGB (higher in LS stands) and RGR (higher in ES stands). The AGB in the LS plots was considerably higher than the average value reported for old-growth tropical montane forest of south-east Asia and Central and South America at similar elevations and temperatures, and of the same magnitude as in tropical lowland forest of these regions. The results of this study highlight the importance of accounting for disturbance regimes and differences in wood density and allometry of tree species dominating at different successional stages in an attempt to quantify the C stock and sink strength of tropical montane forests and how they may differ among continents.

Differences in net global warming potential and greenhouse gas intensity between major rice-based cropping systems in China.

PubMed

Xiong, Zhengqin; Liu, Yinglie; Wu, Zhen; Zhang, Xiaolin; Liu, Pingli; Huang, Taiqing

2015-12-02

Double rice (DR) and upland crop-single rice (UR) systems are the major rice-based cropping systems in China, yet differences in net global warming potential (NGWP) and greenhouse gas intensity (GHGI) between the two systems are poorly documented. Accordingly, a 3-year field experiment was conducted to simultaneously measure methane (CH4) and nitrous oxide (N2O) emissions and changes in soil organic carbon (SOC) in oil rape-rice-rice and wheat-rice (representing DR and UR, respectively) systems with straw incorporation (0, 3 and 6 t/ha) during the rice-growing seasons. Compared with the UR system, the annual CH4, N2O, grain yield and NGWP were significantly increased in the DR system, though little effect on SOC sequestration or GHGI was observed without straw incorporation. Straw incorporation increased CH4 emission and SOC sequestration but had no significant effect on N2O emission in both systems. Averaged over the three study years, straw incorporation had no significant effect on NGWP and GHGI in the UR system, whereas these parameters were greatly increased in the DR system, i.e., by 108% (3 t/ha) and 180% (6 t/ha) for NGWP and 103% (3 t/ha) and 168% (6 t/ha) for GHGI.

Differences in net global warming potential and greenhouse gas intensity between major rice-based cropping systems in China

PubMed Central

Xiong, Zhengqin; Liu, Yinglie; Wu, Zhen; Zhang, Xiaolin; Liu, Pingli; Huang, Taiqing

2015-01-01

Double rice (DR) and upland crop-single rice (UR) systems are the major rice-based cropping systems in China, yet differences in net global warming potential (NGWP) and greenhouse gas intensity (GHGI) between the two systems are poorly documented. Accordingly, a 3-year field experiment was conducted to simultaneously measure methane (CH4) and nitrous oxide (N2O) emissions and changes in soil organic carbon (SOC) in oil rape-rice-rice and wheat-rice (representing DR and UR, respectively) systems with straw incorporation (0, 3 and 6 t/ha) during the rice-growing seasons. Compared with the UR system, the annual CH4, N2O, grain yield and NGWP were significantly increased in the DR system, though little effect on SOC sequestration or GHGI was observed without straw incorporation. Straw incorporation increased CH4 emission and SOC sequestration but had no significant effect on N2O emission in both systems. Averaged over the three study years, straw incorporation had no significant effect on NGWP and GHGI in the UR system, whereas these parameters were greatly increased in the DR system, i.e., by 108% (3 t/ha) and 180% (6 t/ha) for NGWP and 103% (3 t/ha) and 168% (6 t/ha) for GHGI. PMID:26626733

Differences in net global warming potential and greenhouse gas intensity between major rice-based cropping systems in China

NASA Astrophysics Data System (ADS)

Xiong, Zhengqin; Liu, Yinglie; Wu, Zhen; Zhang, Xiaolin; Liu, Pingli; Huang, Taiqing

2015-12-01

Double rice (DR) and upland crop-single rice (UR) systems are the major rice-based cropping systems in China, yet differences in net global warming potential (NGWP) and greenhouse gas intensity (GHGI) between the two systems are poorly documented. Accordingly, a 3-year field experiment was conducted to simultaneously measure methane (CH4) and nitrous oxide (N2O) emissions and changes in soil organic carbon (SOC) in oil rape-rice-rice and wheat-rice (representing DR and UR, respectively) systems with straw incorporation (0, 3 and 6 t/ha) during the rice-growing seasons. Compared with the UR system, the annual CH4, N2O, grain yield and NGWP were significantly increased in the DR system, though little effect on SOC sequestration or GHGI was observed without straw incorporation. Straw incorporation increased CH4 emission and SOC sequestration but had no significant effect on N2O emission in both systems. Averaged over the three study years, straw incorporation had no significant effect on NGWP and GHGI in the UR system, whereas these parameters were greatly increased in the DR system, i.e., by 108% (3 t/ha) and 180% (6 t/ha) for NGWP and 103% (3 t/ha) and 168% (6 t/ha) for GHGI.

STXM/C 1s-NEXAFS study of Eu(III) and Uranyl humic acid aggregates at different pH

NASA Astrophysics Data System (ADS)

Plaschke, M.; Rothe, J.; Denecke, M. A.; Geckeis, H.

2010-04-01

Humic acids (HA) are chemically heterogeneous and structurally ill-defined biopolymers which are able to bind traces of actinides or lanthanides. Due to their dimensions in the colloidal size range they may affect transport of these elements in aquatic systems. Eu(III)- and UO22+-HA aggregates have been investigated by Scanning Transmission X-ray Microscopy (STXM) and C 1s-NEXAFS under systematic variation of pH. In the Eu(III)- and UO22+-HA systems aggregate morphologies at near neutral pH were similar to those observed in previous studies: optically dense zones (high absorption at the carbon K-edge) are embedded in a matrix of less dense material. C 1s-NEXAFS signatures observed in the different zones, i.e., the intensity of the characteristic complexation feature previously experimentally described and recently theoretically characterized, strongly depends on sample pH. In the alkaline regime (pH 9) with added carbonate, co-precipitation of Eu(III)-carbonate (or ternary carbonate/(oxo)hydroxide complexes) with the Eu(III)-HA majority fraction is observed but Eu(III) binding to HA over carbonate in the dense zones seems to be favoured. The UO22+-HA system exhibits in alkaline solution more compact morphologies combined with a strong metal ion complexation effect in the NEXAFS. Eu(III) and UO22+ polyacrylic acid (PAA) aggregates used as HA model systems show similar spectral trends; these aggregates exhibit highly branched morphologies without segregation into zones with different NEXAFS signatures. The chemical environment such as pH or the type of metal cation strongly influences both HA aggregate morphologies and NEXAFS spectral signatures. These can, in turn, be used as indicators of the strength of lanthanide or actinide ion bound HA interaction.

Structure-Property-Function Relationship in Humic Substances to Explain the Biological Activity in Plants

PubMed Central

García, Andrés Calderín; de Souza, Luiz Gilberto Ambrosio; Pereira, Marcos Gervasio; Castro, Rosane Nora; García-Mina, José María; Zonta, Everaldo; Lisboa, Francy Junior Gonçalves; Berbara, Ricardo Luis Louro

2016-01-01

Knowledge of the structure-property-function relationship of humic substances (HSs) is key for understanding their role in soil. Despite progress, studies on this topic are still under discussion. We analyzed 37 humic fractions with respect to their isotopic composition, structural characteristics, and properties responsible for stimulating plant root parameters. We showed that regardless of the source of origin of the carbon (C3 or C4), soil-extracted HSs and humic acids (HAs) are structurally similar to each other. The more labile and functionalized HS fraction is responsible for root emission, whereas the more recalcitrant and less functionalized HA fraction is related to root growth. Labile structures promote root stimulation at lower concentrations, while recalcitrant structures require higher concentrations to promote a similar stimulus. These findings show that lability and recalcitrance, which are derived properties of humic fractions, are related to the type and intensity of their bioactivity. In summary, the comparison of humic fractions allowed a better understanding of the relationship between the source of origin of plant carbon and the structure, properties, and type and intensity of the bioactivity of HSs in plants. In this study, scientific concepts are unified and the basis for the agronomic use of HSs is established. PMID:26862010

Benchmark map of forest carbon stocks in tropical regions across three continents.

PubMed

Saatchi, Sassan S; Harris, Nancy L; Brown, Sandra; Lefsky, Michael; Mitchard, Edward T A; Salas, William; Zutta, Brian R; Buermann, Wolfgang; Lewis, Simon L; Hagen, Stephen; Petrova, Silvia; White, Lee; Silman, Miles; Morel, Alexandra

2011-06-14

Developing countries are required to produce robust estimates of forest carbon stocks for successful implementation of climate change mitigation policies related to reducing emissions from deforestation and degradation (REDD). Here we present a "benchmark" map of biomass carbon stocks over 2.5 billion ha of forests on three continents, encompassing all tropical forests, for the early 2000s, which will be invaluable for REDD assessments at both project and national scales. We mapped the total carbon stock in live biomass (above- and belowground), using a combination of data from 4,079 in situ inventory plots and satellite light detection and ranging (Lidar) samples of forest structure to estimate carbon storage, plus optical and microwave imagery (1-km resolution) to extrapolate over the landscape. The total biomass carbon stock of forests in the study region is estimated to be 247 Gt C, with 193 Gt C stored aboveground and 54 Gt C stored belowground in roots. Forests in Latin America, sub-Saharan Africa, and Southeast Asia accounted for 49%, 25%, and 26% of the total stock, respectively. By analyzing the errors propagated through the estimation process, uncertainty at the pixel level (100 ha) ranged from ± 6% to ± 53%, but was constrained at the typical project (10,000 ha) and national (>1,000,000 ha) scales at ca. ± 5% and ca. ± 1%, respectively. The benchmark map illustrates regional patterns and provides methodologically comparable estimates of carbon stocks for 75 developing countries where previous assessments were either poor or incomplete.

Hyaluronan-decorated liposomes as drug delivery systems for cutaneous administration.

PubMed

Franzé, Silvia; Marengo, Alessandro; Stella, Barbara; Minghetti, Paola; Arpicco, Silvia; Cilurzo, Francesco

2018-01-15

The work aimed to evaluate the feasibility to design hyaluronic acid (HA) decorated flexible liposomes to enhance the skin penetration of nifedipine. Egg phosphatidylcholine (e-PC) based transfersomes (Tween 80) and transethosomes (ethanol) were prepared. HA was reacted with 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (HA-DPPE) and two molar ratios (0.5 and 3%) of conjugate with respect to e-PC were tested. The presence of HA significantly increased the packing order of the bilayer (as verified by differential scanning calorimetry), reducing both the encapsulation efficiency and the flexibility of the decorated liposomes in a dose-dependent manner. In fact, at the highest HA content the constant of deformability (K, N/mm) increased and the carriers remained on the skin surface after topical application. The stiffening effect of HA was counterbalanced by the addition of ethanol as fluidizing agent that allowed to maintain the highest HA concentration, meanwhile reducing the K value of the vesicles. HA-transethosomes allowed a suitable nifedipine permeation (J ∼ 30 ng/cm 2 /h) and significantly improved the drug penetration, favouring the formation of a drug depot in the epidermis. These data suggest the potentialities of HA-transethosomes as drug delivery systems intended for the treatment of cutaneous pathologies and underline the importance of studying the effect of surface functionalization on carrier deformability to rationalize the design of such systems. Copyright © 2017 Elsevier B.V. All rights reserved.

Low nitrogen fertilization adapts rice root microbiome to low nutrient environment by changing biogeochemical functions.

PubMed

Ikeda, Seishi; Sasaki, Kazuhiro; Okubo, Takashi; Yamashita, Akifumu; Terasawa, Kimihiro; Bao, Zhihua; Liu, Dongyan; Watanabe, Takeshi; Murase, Jun; Asakawa, Susumu; Eda, Shima; Mitsui, Hisayuki; Sato, Tadashi; Minamisawa, Kiwamu

2014-01-01

Reduced fertilizer usage is one of the objectives of field management in the pursuit of sustainable agriculture. Here, we report on shifts of bacterial communities in paddy rice ecosystems with low (LN), standard (SN), and high (HN) levels of N fertilizer application (0, 30, and 300 kg N ha(-1), respectively). The LN field had received no N fertilizer for 5 years prior to the experiment. The LN and HN plants showed a 50% decrease and a 60% increase in biomass compared with the SN plant biomass, respectively. Analyses of 16S rRNA genes suggested shifts of bacterial communities between the LN and SN root microbiomes, which were statistically confirmed by metagenome analyses. The relative abundances of Burkholderia, Bradyrhizobium and Methylosinus were significantly increased in root microbiome of the LN field relative to the SN field. Conversely, the abundance of methanogenic archaea was reduced in the LN field relative to the SN field. The functional genes for methane oxidation (pmo and mmo) and plant association (acdS and iaaMH) were significantly abundant in the LN root microbiome. Quantitative PCR of pmoA/mcrA genes and a (13)C methane experiment provided evidence of more active methane oxidation in the rice roots of the LN field. In addition, functional genes for the metabolism of N, S, Fe, and aromatic compounds were more abundant in the LN root microbiome. These results suggest that low-N-fertilizer management is an important factor in shaping the microbial community structure containing key microbes for plant associations and biogeochemical processes in paddy rice ecosystems.

Trade-offs between high yields and greenhouse gas emissions in irrigation wheat cropland in China

NASA Astrophysics Data System (ADS)

Cui, Z. L.; Wu, L.; Ye, Y. L.; Ma, W. Q.; Chen, X. P.; Zhang, F. S.

2014-04-01

Although the concept of producing higher yields with reduced greenhouse gas (GHG) emissions is a goal that attracts increasing public and scientific attention, the trade-off between high yields and GHG emissions in intensive agricultural production is not well understood. Here, we hypothesize that there exists a mechanistic relationship between wheat grain yield and GHG emission, and that could be transformed into better agronomic management. A total 33 sites of on-farm experiments were investigated to evaluate the relationship between grain yield and GHG emissions using two systems (conventional practice, CP; high-yielding systems, HY) of intensive winter wheat (Triticum aestivum L.) in China. Furthermore, we discussed the potential to produce higher yields with lower GHG emissions based on a survey of 2938 farmers. Compared to the CP system, grain yield was 39% (2352 kg ha-1) higher in the HY system, while GHG emissions increased by only 10%, and GHG emission intensity was reduced by 21%. The current intensive winter wheat system with farmers' practice had a median yield and maximum GHG emission rate of 6050 kg ha-1 and 4783 kg CO2 eq ha-1, respectively; however, this system can be transformed to maintain yields while reducing GHG emissions by 26% (6077 kg ha-1, and 3555 kg CO2 eq ha-1). Further, the HY system was found to increase grain yield by 39% with a simultaneous reduction in GHG emissions by 18% (8429 kg ha-1, and 3905 kg CO2 eq ha-1, respectively). In the future, we suggest moving the trade-off relationships and calculations from grain yield and GHG emissions to new measures of productivity and environmental protection using innovative management technologies.

The validation of forensic DNA extraction systems to utilize soil contaminated biological evidence.

PubMed

Kasu, Mohaimin; Shires, Karen

2015-07-01

The production of full DNA profiles from biological evidence found in soil has a high failure rate due largely to the inhibitory substance humic acid (HA). Abundant in various natural soils, HA co-extracts with DNA during extraction and inhibits DNA profiling by binding to the molecular components of the genotyping assay. To successfully utilize traces of soil contaminated evidence, such as that found at many murder and rape crime scenes in South Africa, a reliable HA removal extraction system would often be selected based on previous validation studies. However, for many standard forensic DNA extraction systems, peer-reviewed publications detailing the efficacy on soil evidence is either lacking or is incomplete. Consequently, these sample types are often not collected or fail to yield suitable DNA material due to the use of unsuitable methodology. The aim of this study was to validate the common forensic DNA collection and extraction systems used in South Africa, namely DNA IQ, FTA elute and Nucleosave for processing blood and saliva contaminated with HA. A forensic appropriate volume of biological evidence was spiked with HA (0, 0.5, 1.5 and 2.5 mg/ml) and processed through each extraction protocol for the evaluation of HA removal using QPCR and STR-genotyping. The DNA IQ magnetic bead system effectively removed HA from highly contaminated blood and saliva, and generated consistently acceptable STR profiles from both artificially spiked samples and crude soil samples. This system is highly recommended for use on soil-contaminated evidence over the cellulose card-based systems currently being preferentially used for DNA sample collection. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Heterogeneous Electrochemical Immunoassay of Hippuric Acid on the Electrodeposited Organic Films

PubMed Central

Choi, Young-Bong; Kim, Nam-Hyuk; Kim, Seung-Hoi; Tae, Gun-Sik; Kim, Hyug-Han

2014-01-01

By directly coordinating hippuric acid (HA) to the ferrate (Fe) as an electron transfer mediator, we synthesized a Fe-HA complex, which shows a good electrochemical signal and thus enables the electrochemical immunoanalysis for HA. We electrodeposited organic films containing imidazole groups on the electrode surface and then bonded Ni ion (positive charge) to induce immobilization of Fe-HA (negative charge) through the electrostatic interaction. The heterogeneous competitive immunoassay system relies on the interaction between immobilized Fe-HA antigen conjugate and free HA antigen to its antibody (anti-HA). The electric signal becomes weaker due to the hindered electron transfer reaction when a large-sized HA antibody is bound onto the Fe-HA. However, in the presence of HA, the electric signal increases because free HA competitively reacts with the HA antibody prior to actual reaction and thus prevents the HA antibody from interacting with Fe-HA at the electrode surface. This competition reaction enabled an electrochemical quantitative analysis of HA concentration with a detection limit of 0.5 μg mL−1, and thus allowed us to develop a simple and rapid electrochemical immunosensor. PMID:25313491

Nitrogen Use Efficiency of California Almond Orchards Using Advanced Farming Practices

NASA Astrophysics Data System (ADS)

Smart, David; Schellenberg, Daniel; Saa Silva, Sebastian; Muhammad, Saiful; Sanden, Blake; Brown, Patrick

2014-05-01

Mobilization of reactive nitrogen species (NH3, NH4+, NOx, N2O, NO2- and NO3-) is perceived as one of the foremost challenges for modern agricultural production systems. Yet information to address the question of how advanced nitrogen (N) management alters reactive N mobilization is lacking. During 2009 to 2012 we monitored spatially constrained N2O emissions and potential leachable NO3-, along with yield-N content to examine their contribution to nitrogen use efficiency (NUE, fruit-N exported/fertilizer-N applied) for a modern, high yielding almond production system. This modern production system schedules irrigation to match evapotranspiration (ETc) estimated from the Penman-Montieth calculation of a reference evapotranspiration (ETo) times a seasonal crop coefficient (Kc) which was verified using eddy covariance and surface renewal latent heat flux estimates. Split N-fertilizer applications were targeted to tree-N demand and root proliferation. These production systems demand upwards of 300 kg N ha-1. NUE was found to be nearly 80% at an N application level allowing for economic sustainability of the system (308 kg N ha-1). When mobilization of N2O and NO3- were included in the NUE assessment, these systems were still highly sustainable in terms of N applied. We also monitored production and consumption of the greenhouse gases of carbon dioxide (CO2) and methane (CH4). These systems had relatively low levels of N2O emissions with emissions of N2O as a fraction of N-fertilizer applied being consistently less than IPCC Tier 1 emissions factors, and lower than the average estimated for most continental US farming systems. The system also demonstrated a capacity for net CH4 oxidation over the course of a season that occurred mainly in the driveways between tree rows that are kept dry over the course of the season in this arid environment. Our study indicated that tight management of water resources and targeted applications of N-fertilizer resulted in net positive greenhouse gas consumption overall.

The key players of the primary root growth and development also function in lateral roots in Arabidopsis.

PubMed

Tian, Huiyu; Jia, Yuebin; Niu, Tiantian; Yu, Qianqian; Ding, Zhaojun

2014-05-01

The core regulators which are required for primary root growth and development also function in lateral root development or lateral root stem cell niche maintenance. The primary root systems and the lateral root systems are the two important root systems which are vital to the survival of plants. Though the molecular mechanism of the growth and development of both the primary root systems and the lateral root systems have been extensively studied individually in Arabidopsis, there are not so much evidence to show that if both root systems share common regulatory mechanisms. AP2 family transcription factors such as PLT1 (PLETHORA1) and PLT2, GRAS family transcription factors such as SCR (SCARECROW) and SHR (SHORT ROOT) and WUSCHEL-RELATED HOMEOBOX transcription factor WOX5 have been extensively studied and found to be essential for primary root growth and development. In this study, through the expression pattern analysis and mutant examinations, we found that these core regulators also function in lateral root development or lateral root stem cell niche maintenance.

Ingestion of Lactobacillus strain reduces anxiety and improves cognitive function in the hyperammonemia rat.

PubMed

Luo, Jia; Wang, Tao; Liang, Shan; Hu, Xu; Li, Wei; Jin, Feng

2014-03-01

Evidence suggests that the hyperammonemia (HA)-induced neuroinflammation and alterations in the serotonin (5-HT) system may contribute to cognitive decline and anxiety disorder during hepatic encephalopathy (HE). Probiotics that maintain immune system homeostasis and regulate the 5-HT system may be potential treatment for HA-mediated neurological disorders in HE. In this study, we tested the efficacy of probiotic Lactobacillus helveticus strain NS8 in preventing cognitive decline and anxiety-like behavior in HA rats. Chronic HA was induced by intraperitoneal injection of ammonium acetate for four weeks in male Sprague-Dawley rats. HA rats were then given Lactobacillus helveticus strain NS8 (10(9) CFU mL(-1)) in drinking water as a daily supplementation. The Morris water maze task assessed cognitive function, and the elevated plus maze test evaluated anxiety-like behavior. Neuroinflammation was assessed by measuring the inflammatory markers: inducible nitric oxide synthase, prostaglandin E2, and interleukin-1 β in the brain. 5-HT system activity was evaluated by measuring 5-HT and its metabolite, 5-HIAA, and the 5-HT precursor, tryptophan. Probiotic treatment of HA rats significantly reduced the level of inflammatory markers, decreased 5-HT metabolism, restored cognitive function and improved anxiety-like behavior. These results indicate that probiotic L. helveticus strain NS8 is beneficial for the treatment of cognitive decline and anxiety-like behavior in HA rats.

Eco-efficient agriculture for producing higher yields with lower greenhouse gas emissions: a case study of intensive irrigation wheat production in China

NASA Astrophysics Data System (ADS)

Cui, Z. L.; Ye, Y. L.; Ma, W. Q.; Chen, X. P.; Zhang, F. S.

2013-10-01

Although the concept of producing higher yields with reduced greenhouse gas (GHG) emissions is a goal that attracts increasing public and scientific attention, the tradeoff between crop productivity and GHG emissions in intensive agricultural production is not well understood. In this study, we investigated 33 sites of on-farm experiments to evaluate the tradeoff between grain yield and GHG emissions using two systems (conventional practice, CP; high-yielding systems, HY) of intensive irrigation wheat (Triticum aestivum L.) in China. Furthermore, we discussed the potential to produce higher yields with lower GHG emissions based on a survey of 2938 farmers. However, in both the HY and CP systems, wheat grain yield response to GHG emissions fit a linear-plateau model, whereas the curve for grain yield from the HY system was always higher than that from the CP system. Compared to the CP system, grain yield was 44% (2.6 Mg ha-1) higher in the HY system, while GHG emissions increased by only 2.5%, and GHG emission intensity was reduced by 29%. The current intensive irrigation wheat system with farmers' practice had a median yield and maximum GHG emission rate of 6.05 Mg ha-1 and 4783 kg CO2 eq ha-1, respectively; however, this system can be transformed to maintain yields while reducing GHG emissions by 40% (5.96 Mg ha-1, and 2890 kg CO2 eq ha-1). Further, the HY system was found to increase grain yield by 41% with a simultaneous reduction in GHG emissions by 38% (8.55 Mg ha-1, and 2961 kg CO2 eq ha-1, respectively). In the future, we suggest moving the tradeoff relationships and calculations from grain yield and GHG emissions, to new measures of productivity and environmental protection using innovative management technologies. This shift in focus is critical to achieve food and environmental security.

Hyaluronan (HA) interacting proteins RHAMM and hyaluronidase impact prostate cancer cell behavior and invadopodia formation in 3D HA-based hydrogels.

PubMed

Gurski, Lisa A; Xu, Xian; Labrada, Lyana N; Nguyen, Ngoc T; Xiao, Longxi; van Golen, Kenneth L; Jia, Xinqiao; Farach-Carson, Mary C

2012-01-01

To study the individual functions of hyaluronan interacting proteins in prostate cancer (PCa) motility through connective tissues, we developed a novel three-dimensional (3D) hyaluronic acid (HA) hydrogel assay that provides a flexible, quantifiable, and physiologically relevant alternative to current methods. Invasion in this system reflects the prevalence of HA in connective tissues and its role in the promotion of cancer cell motility and tissue invasion, making the system ideal to study invasion through bone marrow or other HA-rich connective tissues. The bio-compatible cross-linking process we used allows for direct encapsulation of cancer cells within the gel where they adopt a distinct, cluster-like morphology. Metastatic PCa cells in these hydrogels develop fingerlike structures, "invadopodia", consistent with their invasive properties. The number of invadopodia, as well as cluster size, shape, and convergence, can provide a quantifiable measure of invasive potential. Among candidate hyaluronan interacting proteins that could be responsible for the behavior we observed, we found that culture in the HA hydrogel triggers invasive PCa cells to differentially express and localize receptor for hyaluronan mediated motility (RHAMM)/CD168 which, in the absence of CD44, appears to contribute to PCa motility and invasion by interacting with the HA hydrogel components. PCa cell invasion through the HA hydrogel also was found to depend on the activity of hyaluronidases. Studies shown here reveal that while hyaluronidase activity is necessary for invadopodia and inter-connecting cluster formation, activity alone is not sufficient for acquisition of invasiveness to occur. We therefore suggest that development of invasive behavior in 3D HA-based systems requires development of additional cellular features, such as activation of motility associated pathways that regulate formation of invadopodia. Thus, we report development of a 3D system amenable to dissection of biological processes associated with cancer cell motility through HA-rich connective tissues.

Generalized Lotka—Volterra systems connected with simple Lie algebras

NASA Astrophysics Data System (ADS)

Charalambides, Stelios A.; Damianou, Pantelis A.; Evripidou, Charalambos A.

2015-06-01

We devise a new method for producing Hamiltonian systems by constructing the corresponding Lax pairs. This is achieved by considering a larger subset of the positive roots than the simple roots of the root system of a simple Lie algebra. We classify all subsets of the positive roots of the root system of type An for which the corresponding Hamiltonian systems are transformed, via a simple change of variables, to Lotka-Volterra systems. For some special cases of subsets of the positive roots of the root system of type An, we produce new integrable Hamiltonian systems.

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

PubMed Central

Rellán-Álvarez, Rubén; Lobet, Guillaume; Lindner, Heike; Pradier, Pierre-Luc; Sebastian, Jose; Yee, Muh-Ching; Geng, Yu; Trontin, Charlotte; LaRue, Therese; Schrager-Lavelle, Amanda; Haney, Cara H; Nieu, Rita; Maloof, Julin; Vogel, John P; Dinneny, José R

2015-01-01

Root systems develop different root types that individually sense cues from their local environment and integrate this information with systemic signals. This complex multi-dimensional amalgam of inputs enables continuous adjustment of root growth rates, direction, and metabolic activity that define a dynamic physical network. Current methods for analyzing root biology balance physiological relevance with imaging capability. To bridge this divide, we developed an integrated-imaging system called Growth and Luminescence Observatory for Roots (GLO-Roots) that uses luminescence-based reporters to enable studies of root architecture and gene expression patterns in soil-grown, light-shielded roots. We have developed image analysis algorithms that allow the spatial integration of soil properties, gene expression, and root system architecture traits. We propose GLO-Roots as a system that has great utility in presenting environmental stimuli to roots in ways that evoke natural adaptive responses and in providing tools for studying the multi-dimensional nature of such processes. DOI: http://dx.doi.org/10.7554/eLife.07597.001 PMID:26287479

GLO-Roots: An imaging platform enabling multidimensional characterization of soil-grown root systems

DOE PAGES

Rellan-Alvarez, Ruben; Lobet, Guillaume; Lindner, Heike; ...

2015-08-19

Root systems develop different root types that individually sense cues from their local environment and integrate this information with systemic signals. This complex multi-dimensional amalgam of inputs enables continuous adjustment of root growth rates, direction, and metabolic activity that define a dynamic physical network. Current methods for analyzing root biology balance physiological relevance with imaging capability. To bridge this divide, we developed an integrated-imaging system called Growth and Luminescence Observatory for Roots (GLO-Roots) that uses luminescence-based reporters to enable studies of root architecture and gene expression patterns in soil-grown, light-shielded roots. We have developed image analysis algorithms that allow themore » spatial integration of soil properties, gene expression, and root system architecture traits. We propose GLO-Roots as a system that has great utility in presenting environmental stimuli to roots in ways that evoke natural adaptive responses and in providing tools for studying the multi-dimensional nature of such processes.« less

Longleaf Pine Root System Development and Seedling Quality in Response to Copper Root Pruning and Cavity Size

Treesearch

Mary Anne Sword Sayer; Shi-Jean Susana Sung; James D. Haywood

2011-01-01

Cultural practices that modify root system structure in the plug of container-grown seedlings have the potential to improve root system function after planting. Our objective was to assess how copper root pruning affects the quality and root system development of longleaf pine seedlings grown in three cavity sizes in a greenhouse. Copper root pruning increased seedling...

Acanthocephalans from fishes and amphibians in Vietnam, with descriptions of five new species

PubMed Central

2014-01-01

Eight species of acanthocephalans are reported, and five are new. Specimens of Neoechinorhynchus (Hebesoma) manubrianus Amin, Ha & Ha, 2011 were similar to the original description. Neoechinorhynchus (Hebesoma) spiramuscularis n. sp. (Neoechinorhynchidae), from Xenocypris davidi, has a unique proboscis receptacle wrapped in a spiral muscular layer, and an undulating flask-shaped lemnisci, as well as double para-receptacle structures. Heterosentis mongcai n. sp. (Arhythmacanthidae), from Acreichthys sp., has a small fusiform trunk with an unarmed cone and anterior trunk spines, and a proboscis with two circles of rooted apical hooks and 3–4 circles of rooted posterior spines as well as a para-receptacle-like structure at the posterior end. The poorly known Filisoma indicum Van Cleave, 1928 is fully described and illustrated for the first time. Acanthocephalus parallelcementglandatus n. sp. (Echinorhynchidae), from Clarias batrachus, is distinguished from other species of Acanthocephalus by its small fusiform trunk and parallel tubular cement glands. Pseudoacanthocephalus coniformis n. sp. (Echinorhynchidae), from Hylarana sp., is distinguished from other species by having an anterior trunk collar and staggered prominent filiform cement glands, among other features. Cathayacanthus spinitruncatus n. sp. (Rhadinorhynchidae), from Leiognathus equulus, is distinguished from the only two known species of the genus by having a very long and slender proboscis with more than 50 hooks per row and a totally spined trunk. The generic diagnosis of Cathayacanthus Golvan, 1969 is emended. Rhadinorhynchus johnstoni Golvan, 1969 (Rhadinorhynchidae) perfectly fits the only complete description of that species from the Fiji Islands. PMID:25331738

Hydroxyapatite-magnetite-MWCNT nanocomposite as a biocompatible multifunctional drug delivery system for bone tissue engineering.

PubMed

Pistone, Alessandro; Iannazzo, Daniela; Panseri, Silvia; Montesi, Monica; Tampieri, Anna; Galvagno, Signorino

2014-10-24

New magnetic hydroxyapatite-based nanomaterials as bone-specific systems for controlled drug delivery have been synthesized. The synthesized hydroxyapatite, HA, decorated with magnetite nanoparticles by a deposition method (HA/Fe3O4) and the nanocomposite system obtained using magnetic multi-walled carbon nanotubes (HA/MWCNT/Fe3O4) as a filler for HA have been characterized by chemical and morphological analyses, and their biological behavior was investigated. The systems have also been doped with clodronate in order to combine the effect of bone biomineralization induced by hydroxyapatite-based composites with the decrease of osteoclast formation induced by the drug. An analysis of the preosteoclastic RAW264.7 cell proliferation by MTT assay confirmed the high biocompatibility of the three systems. TRAP staining of RAW 264.7 conditioned with sRAKL to induce osteoclastogenesis, cultured in the presence of the systems doped and undoped with clodronate, showed the inhibitory effect of clodronate after we counted the MNC TRAP(+)cells but only in the osteoclast formation; in particular, the system HA/Fe3O4-Clo exerted a high inhibitory effect compared to the drug alone. These results demonstrate that the synthesized nanocomposites are a biocompatible magnetic drug delivery system and can represent a useful multimodal platform for applications in bone tissue engineering.

[Aconitine analogues in wild Aconitum plants: contents toxicity to mice and decrease by boiling].

PubMed

Kasahara, Yoshimasa; Itou, Takeshi; Numazawa, Toshiaki; Wada, Akinobu

2013-01-01

Simultaneous determination of four aconitine analogues (ACs) (AC; aconitine, HA; hypaconitine, JA; jesaconitine, MA; mesaconitine) in leaves and roots of wild Aconitum plants (Aconitum japonicum THUNBERG, Aconitum okuyamae Nakai) was carried out to elucidate the relation between toxicity to mice and ACs content determind by liquid chromatography tandem mass spectrometry. The total amounts of ACs in leaves, roots, petals and nectaries of Aconitum japonicum collected at Sagae-shi Tashiro were 5.9 μg/g, 928.1 μg/g, 46.1 μg/g, and 69.8 μg/g, respectively. Despite the high contents in nectary, commercial honey contained no ACs. Extract of wild Aconitum japonicum roots which contained ACs (2.69 mg/g) was administered to 5 mice orally at 1.0 g/kg (fresh root equivalent), and 2 mice died. On the other hand, 3 of 5 mice died after being given the standard AC (3.0 mg/kg, p.o.). These findings confirmed good coincidence between toxicity and quantitative values. Mice given extract of Aconitum okuyamae root (100 g/kg, p.o.) without ACs showed no toxic symptoms. Residual ACs in Aconitum leaves were examined after boiling. The remaining percentage of ACs in leaves after 0.5 minutes boiling was 31.6%, and the amount in the boiling water was 54.5%. MA is converted into benzoylmesaconine by hydrolysis (by boiling). Therefore food poisoning caused by Aconitum plants is explained by detection of benzoylmesaconine formed during food preparation.

MDR1 siRNA loaded hyaluronic acid-based CD44 targeted nanoparticle systems circumvent paclitaxel resistance in ovarian cancer

PubMed Central

Yang, Xiaoqian; lyer, Arun K.; Singh, Amit; Choy, Edwin; Hornicek, Francis J.; Amiji, Mansoor M.; Duan, Zhenfeng

2015-01-01

Development of multidrug resistance (MDR) is an almost universal phenomenon in patients with ovarian cancer, and this severely limits the ultimate success of chemotherapy in the clinic. Overexpression of the MDR1 gene and corresponding P-glycoprotein (Pgp) is one of the best known MDR mechanisms. MDR1 siRNA based strategies were proposed to circumvent MDR, however, systemic, safe, and effective targeted delivery is still a major challenge. Cluster of differentiation 44 (CD44) targeted hyaluronic acid (HA) based nanoparticle has been shown to successfully deliver chemotherapy agents or siRNAs into tumor cells. The goal of this study is to evaluate the ability of HA-PEI/HA-PEG to deliver MDR1 siRNA and the efficacy of the combination of HA-PEI/HA-PEG/MDR1 siRNA with paclitaxel to suppress growth of ovarian cancer. We observed that HA-PEI/HA-PEG nanoparticles can efficiently deliver MDR1 siRNA into MDR ovarian cancer cells, resulting in down-regulation of MDR1 and Pgp expression. Administration of HA-PEI/HA-PEG/MDR1 siRNA nanoparticles followed by paclitaxel treatment induced a significant inhibitory effect on the tumor growth, decreased Pgp expression and increased apoptosis in MDR ovarian cancer mice model. Our findings suggest that CD44 targeted HA-PEI/HA-PEG/MDR1 siRNA nanoparticles can serve as a therapeutic tool with great potentials to circumvent MDR in ovarian cancer. PMID:25687880

MDR1 siRNA loaded hyaluronic acid-based CD44 targeted nanoparticle systems circumvent paclitaxel resistance in ovarian cancer

NASA Astrophysics Data System (ADS)

Yang, Xiaoqian; Lyer, Arun K.; Singh, Amit; Choy, Edwin; Hornicek, Francis J.; Amiji, Mansoor M.; Duan, Zhenfeng

2015-02-01

Development of multidrug resistance (MDR) is an almost universal phenomenon in patients with ovarian cancer, and this severely limits the ultimate success of chemotherapy in the clinic. Overexpression of the MDR1 gene and corresponding P-glycoprotein (Pgp) is one of the best known MDR mechanisms. MDR1 siRNA based strategies were proposed to circumvent MDR, however, systemic, safe, and effective targeted delivery is still a major challenge. Cluster of differentiation 44 (CD44) targeted hyaluronic acid (HA) based nanoparticle has been shown to successfully deliver chemotherapy agents or siRNAs into tumor cells. The goal of this study is to evaluate the ability of HA-PEI/HA-PEG to deliver MDR1 siRNA and the efficacy of the combination of HA-PEI/HA-PEG/MDR1 siRNA with paclitaxel to suppress growth of ovarian cancer. We observed that HA-PEI/HA-PEG nanoparticles can efficiently deliver MDR1 siRNA into MDR ovarian cancer cells, resulting in down-regulation of MDR1 and Pgp expression. Administration of HA-PEI/HA-PEG/MDR1 siRNA nanoparticles followed by paclitaxel treatment induced a significant inhibitory effect on the tumor growth, decreased Pgp expression and increased apoptosis in MDR ovarian cancer mice model. Our findings suggest that CD44 targeted HA-PEI/HA-PEG/MDR1 siRNA nanoparticles can serve as a therapeutic tool with great potentials to circumvent MDR in ovarian cancer.

Distinct modes of adventitious rooting in Arabidopsis thaliana.

PubMed

Correa, L da Rocha; Troleis, J; Mastroberti, A A; Mariath, J E A; Fett-Neto, A G

2012-01-01

The literature describes different rooting protocols for Arabidopsis thaliana as models to study adventitious rooting, and results are generally perceived as comparable. However, there is a lack of investigations focusing on the distinct features, advantages and limitations of each method in the study of adventitious rooting with both wild-type (WT) ecotypes and their respective mutants. This investigation was undertaken to evaluate the adventitious rooting process in three different experimental systems, all using A. thaliana, analysing the same rooting parameters after transient exposure to auxin (indole-3-acetic acid) and control conditions: excised leaves, de-rooted plants and etiolated seedlings. The founding tissues and sites of origin of roots differed depending on the system used, whereas all rooting patterns were of the direct type (i.e., without callus formation). None of the systems had an absolute requirement for exogenous auxin, although rooting was enhanced by this phytohormone, with the exception of de-rooted plants, which had adventitious rooting strongly inhibited by exogenous auxin. Root elongation was much favoured in isolated leaves. Auxin-overproducing mutants could not be used in the detached leaf system due to precocious senescence; in the de-rooted plant system, these mutants had a WT-like rooting response, whereas the expression of the 'rooty' phenotype was only evident in the etiolated seedling system. Adventitious rooting of etiolated WT seedlings in the presence of exogenous auxin was inhibited by exogenous flavonoids, which act as auxin transport inhibitors; surprisingly, the flavonoid-deficient mutant chs had a lower rooting response compared to WT. Although Arabidopsis is an excellent model system to study adventitious rooting, physiological and developmental responses differed significantly, underlining the importance of avoiding data generalisation on rooting responses derived from different experimental systems with this species. © 2011 German Botanical Society and The Royal Botanical Society of the Netherlands.

Gamma ray-induced synthesis of hyaluronic acid/chondroitin sulfate-based hydrogels for biomedical applications

NASA Astrophysics Data System (ADS)

Zhao, Linlin; Gwon, Hui-Jeong; Lim, Youn-Mook; Nho, Young-Chang; Kim, So Yeon

2015-01-01

Hyaluronic acid (HA)/chondroitin sulfate (CS)/poly(acrylic acid) (PAAc) hydrogel systems were synthesized by gamma-ray irradiation without the use of additional initiators or crosslinking agents to achieve a biocompatible hydrogel system for skin tissue engineering. HA and CS derivatives with polymerizable residues were synthesized. Then, the hydrogels composed of glycosaminoglycans, HA, CS, and a synthetic ionic polymer, PAAc, were prepared using gamma-ray irradiation through simultaneous free radical copolymerization and crosslinking. The physicochemical properties of the HA/CS/PAAc hydrogels having various compositions were investigated to evaluate their feasibility as artificial skin substitutes. The gel fractions of the HA/CS/PAAc hydrogels increased in absorbed doses up to 15 kGy, and they exhibited 91-93% gel fractions under 15 kGy radiation. All of the HA/CS/PAAc hydrogels exhibited relatively high water contents of over 90% and reached an equilibrium swelling state within 24 h. The enzymatic degradation kinetics of the HA/CS/PAAc hydrogels depended on both the concentration of the hyaluronidase solution and the ratio of HA/CS/PAAc. The in vitro drug release profiles of the HA/CS/PAAc hydrogels were significantly influenced by the interaction between the ionic groups in the hydrogels and the ionic drug molecules as well as the swelling of the hydrogels. From the cytotoxicity results of human keratinocyte (HaCaT) cells cultured with extracts of the HA/CS/PAAc hydrogels, all of the HA/CS/PAAc hydrogel samples tested showed relatively high cell viabilities of more than 82%, and did not induce any significant adverse effects on cell viability.

Influence of addition order and contact time on thorium(IV) retention by hematite in the presence of humic acids.

PubMed

Reiller, Pascal; Casanova, Florence; Moulin, Valérie

2005-03-15

The influence of addition order and contact time in the system hematite (alpha-Fe2O3)-humic acid (HA)-thorium(IV) (Th(IV)) was studied in batch experiments. Th(IV) is considered here as a chemical analogue of other actinides (IV). The sorption isotherms were acquired varying pH in the range 2-10 and HA concentration in the range 1-100 mg/L. As already observed by numerous authors, Th(IV) retention was hindered when HA and hematite were equilibrated beforehand during 24 h. As it has been observed in a previous study, this effect was drastic when the ratio between humic and surface (iron oxide) sites exceeds a critical value. However, when HA was added after a 24-h equilibration of the hematite-Th(IV) system, Th(IV) was barely desorbed from the iron oxide surface. Furthermore, no drastic effect of the ratio between humic and surface sites could be evidenced, as the increase of HA concentration only results in a slight monotonic decrease in Th(IV) retention. Increasing contact time between components of the systems only indicated slight Th(IV) retention variation. This was interpreted as a consequence of slow kinetic controls of both the Th(IV)-HA complexation and HA-hematite sorption.

Redox potential: An indicator of site productivity in forest management

NASA Astrophysics Data System (ADS)

Sajedi, Toktam; Prescott, Cindy; Lavkulich, Les

2010-05-01

Redox potential (Eh) is an integrated soil measurement that reflects several environmental conditions in the soil associated with aeration, moisture and carbon (organic matter) dynamics. Its measurement can be related to water table fluctuations, precipitation and landscape gradients, organic matter decomposition rates, nutrient dynamics, biological diversity and plant species distribution. Redox is an excellent indicator of soil biological processes, as it is largely a reflection of microbial activities which to a large extent govern carbon dynamics and nutrient cycling. Redox thus serves as an ecological indicator of site productivity at the ecosystem scale and may be used for management purposes as its magnitude can be altered by activities such as harvesting and drainage. A threshold value of 300 mv has been documented as the critical value below which anaerobic conditions in the soil develop. However, redox measurements and its impacts on ecosystem processes such as nutrient cycling and productivity, especially in forest ecosystems, have not received the attention that this "master" variable deserves, On northern Vancouver Island, Canada, regenerating stands of western redcedar-western hemlock (CH) sites exhibit symptoms of nutrient deficiencies and slow growth, but this phenomenon does not occur on adjacent western hemlock- amabalis fir (HA) sites. We tested the hypothesis that differences in nutrient supply and distribution of plant species was caused by differences in moisture regime and redox potential. Redox potential, pH, soil aeration depth (steel rods), organic matter thickness, bulk density, soil carbon store, plant species distribution and richness were measured at five old-growth and five 10-year-old cutover blocks. Results of investigations confirmed that CH forests were wetter, had redox values lower than the critical 300mv and a shallower aerated zone, compared with adjacent regenerating HA sites. Fifty percent of the CH plots had redox values less than +300 mv in the forest floor; whereas only 15 percent of the HA plots had such low values. Composition of the forest understory species was related to soil moisture/aeration. Soil aeration was the most important soil variable influencing plant species composition, explaining 25% of the plant community variability. Eh was always greater than +300 mv in the mineral soil of old growth HA forests but below +300 mv in HA clearcuts, suggesting paludification; however it was below or at this threshold in both CH forests and clearcuts. The reduction in measured redox without a noticeable change in the watertable in HA sites suggests that harvesting HA forests shifts the ecosystem towards more anaerobic conditions more similar to CH sites. In a complimentary study, the significance of redox was assessed in a cedar swamp cutover by exploring the relationships between soil redox potential and tree growth, and mineralization of C and soil C store along a gradient of moisture caused by drainage. Drainage improved aeration in the rooting zone, expressed as redox, and above- and below ground C storage; however C mineralization measured as CO2 evolution was not affected. Tree growth was positively correlated with redox potential. Our results indicate that drainage could be a useful silvicultural practice for improving the productivity of these ecosystems and that it may be possible to improve tree growth without stimulating loss of soil C. This requires that drainage improve aeration in the rooting zone while maintaining redox levels of less than +300 mV in the bulk soil, indicating that redox measurements should be incorporated into silviculture interventions to improve productivity of these forests.

Low Cost Remediation of Mining Sites with Biosolids

NASA Astrophysics Data System (ADS)

Daniels, Walter; Evanylo, Gregory; Stuczynski, Tomasz

2010-05-01

This paper will present collective results of 25 years of research by the authors into the use of municipal biosolids (sewage sludge) and other residuals to reclaim sites disturbed by a range of mining and construction activities. Loading rate experiments and demonstrations have been conducted on areas drastically disturbed by coal mining, sand mining, heavy mineral mining, urbanization, airport construction and heavy metal processing. At all sites, the post-mining soils were devoid of organic matter, very low in nutrients and frequently quite acidic. At all sites, addition of biosolids at higher than agronomic rates resulted in complete stabilization of the resultant mine soils and vigorous stable vegetation that persisted for > 5 years and has allowed enhanced invasion of native herbaceous species. Application of higher rates is not compatible with establishment of certain native tree species (e.g. Pinus sp.), however, due to adverse effects of soluble salts, nutrient enrichment and enhanced competition by grasses. An underlying goal of this program has been to develop approaches that use higher than agronomic rates of biosolids while simultaneously minimizing losses of N and P to local ground- and surface-waters. In the early 1980's, working on USA coal mining spoils, we determined that that approximately 100 Mg/ha of secondary cake biosolids was optimal for revegetation with herbaceous species, but water quality monitoring was not a concern at that time. This finding raised concerns, however, that the large amounts of total N applied (> 2500 kg/ha) would lead to nitrate-N contamination of local waters. Subsequent work in the early 1990's indicated that similar rates of biosolids could be mixed with woodchips (high palatable C source) and land-applied to large (> 100 ha) coal mining sites with no losses of nitrate-N to surface or ground-water due to microbial immobilization of the applied N. Follow-up work at three sand mining (sand & gravel and mineral sands) sites in eastern Virginia indicated that non C-amended biosolids could be applied at loading rates of up to 75 Mg/ha without significant local ground-water effects, but that significant elevation of nitrate-N in shallow root-zone (75 cm) percolates was observed the first winter after application. Addition of palatable C (as sawdust) to adjust the applied biosolids C:N ratio to 25:1 significantly reduced nitrate-N in root-zone percolates and would allow for higher loading rates where indicated. Lime-stabilized biosolids (100 Mg/ha; 15 to 25% CCE) have also been used to permanently stabilize and revegetate large areas (> 100 ha) acid-sulfate (pH < 3.5) soils disturbed by construction in eastern Virginia with minimal local water quality effects. Parallel studies at our sites in the USA have indicated no significant heavy metal leaching or plant uptake risks as long as sludge quality and soil pH are controlled. Finally, long-term (10 yr) results from Katowice, Poland, indicate that high rates (> 250 Mg/ha) of biosolids co-applied with waste limes can be utilized to permanently stabilize and revegetate a wide range of phytotoxic and heavily contaminated Pb/Zn smelter slags and processing tailings. Biosolids are generally available at very low cost for land rehabilitation since their cost of transport and application is usually born by the producer or source municipality. Their use is particularly cost-effective when lime-stabilized materials are applied to strongly acidic or metalliferous sites.

Root anatomy, morphology, and longevity among root orders in Vaccinium corymbosum (Ericaceae).

PubMed

Valenzuela-Estrada, Luis R; Vera-Caraballo, Vivianette; Ruth, Leah E; Eissenstat, David M

2008-12-01

Understanding root processes at the whole-plant or ecosystem scales requires an accounting of the range of functions within a root system. Studying root traits based on their branching order can be a powerful approach to understanding this complex system. The current study examined the highly branched root system of the ericoid plant, Vaccinium corymbosum L. (highbush blueberry) by classifying its root orders with a modified version of the morphometric approach similar to that used in hydrology for stream classification. Root anatomy provided valuable insight into variation in root function across orders. The more permanent portion of the root system occurred in 4th- and higher-order roots. Roots in these orders had radial growth; the lowest specific root length, N:C ratios, and mycorrhizal colonization; the highest tissue density and vessel number; and the coarsest root diameter. The ephemeral portion of the root system was mainly in the first three root orders. First- and 2nd-order roots were nearly anatomically identical, with similar mycorrhizal colonization and diameter, and also, despite being extremely fine, median lifespans were not very short (115-120 d; estimated with minirhizotrons). Our research underscores the value of examining root traits by root order and its implications to understanding belowground processes.

Matching soil salinization and cropping systems in communally managed irrigation schemes

NASA Astrophysics Data System (ADS)

Malota, Mphatso; Mchenga, Joshua

2018-03-01

Occurrence of soil salinization in irrigation schemes can be a good indicator to introduce high salt tolerant crops in irrigation schemes. This study assessed the level of soil salinization in a communally managed 233 ha Nkhate irrigation scheme in the Lower Shire Valley region of Malawi. Soil samples were collected within the 0-0.4 m soil depth from eight randomly selected irrigation blocks. Irrigation water samples were also collected from five randomly selected locations along the Nkhate River which supplies irrigation water to the scheme. Salinity of both the soil and the irrigation water samples was determined using an electrical conductivity (EC) meter. Analysis of the results indicated that even for very low salinity tolerant crops (ECi < 2 dS/m), the irrigation water was suitable for irrigation purposes. However, root-zone soil salinity profiles depicted that leaching of salts was not adequate and that the leaching requirement for the scheme needs to be relooked and always be adhered to during irrigation operation. The study concluded that the crop system at the scheme needs to be adjusted to match with prevailing soil and irrigation water salinity levels.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lui, E.; Moya, Monica L.

This study seeks to validate the reproducibility of previous bioprinting work at Lawrence Livermore National Laboratory (LLNL) on a new Aerotech motion controller system and to modify an existing bioink, fibrin, by adding varying percent volumes of hyaluronic acid (HA). Endothelial and fibroblast cells bioprinted in fibrin gels using the Aerotech system were confirmed to be more than 77 percent viable after one day, and all bioprinted samples retained sterility after one week of culture. To characterize cell behavior in fibrin with HA addition, static co-­culture gels with varying percent volumes of HA were cultured in vitro for one week.more » Resulting confocal microscope images showed increased cell network formation in all concentrations of HA compared to the control (no HA), and rheological tests mimicking static gel compositions displayed positive correlations between gelation time, gel stiffness (G’), and hyaluronic acid concentration. Although the current data is insufficient to quantitatively associate HA concentration with the level of cell vascularization, future work will aim to develop a targeted HA concentration in fibrin for maximum cell network formation, to optimize the printing process parameters for this new bioink composition, and to analyze cell viability in bioprinted fibrin-­HA structures.« less

YUCCA9-Mediated Auxin Biosynthesis and Polar Auxin Transport Synergistically Regulate Regeneration of Root Systems Following Root Cutting

PubMed Central

Xu, Dongyang; Miao, Jiahang; Yumoto, Emi; Yokota, Takao; Asahina, Masashi; Watahiki, Masaaki

2017-01-01

Abstract Recovery of the root system following physical damage is an essential issue for plant survival. An injured root system is able to regenerate by increases in lateral root (LR) number and acceleration of root growth. The horticultural technique of root pruning (root cutting) is an application of this response and is a common garden technique for controlling plant growth. Although root pruning is widely used, the molecular mechanisms underlying the subsequent changes in the root system are poorly understood. In this study, root pruning was employed as a model system to study the molecular mechanisms of root system regeneration. Notably, LR defects in wild-type plants treated with inhibitors of polar auxin transport (PAT) or in the auxin signaling mutant auxin/indole-3-acetic acid19/massugu2 were recovered by root pruning. Induction of IAA19 following root pruning indicates an enhancement of auxin signaling by root pruning. Endogenous levels of IAA increased after root pruning, and YUCCA9 was identified as the primary gene responsible. PAT-related genes were induced after root pruning, and the YUCCA inhibitor yucasin suppressed root regeneration in PAT-related mutants. Therefore, we demonstrate the crucial role of YUCCA9, along with other redundant YUCCA family genes, in the enhancement of auxin biosynthesis following root pruning. This further enhances auxin transport and activates downstream auxin signaling genes, and thus increases LR number. PMID:29016906

[Three-dimensional morphological modeling and visualization of wheat root system].

PubMed

Tan, Feng; Tang, Liang; Hu, Jun-Cheng; Jiang, Hai-Yan; Cao, Wei-Xing; Zhu, Yan

2011-01-01

Crop three-dimensional (3D) morphological modeling and visualization is an important part of digital plant study. This paper aimed to develop a 3D morphological model of wheat root system based on the parameters of wheat root morphological features, and to realize the visualization of wheat root growth. According to the framework of visualization technology for wheat root growth, a 3D visualization model of wheat root axis, including root axis growth model, branch geometric model, and root axis curve model, was developed firstly. Then, by integrating root topology, the corresponding pixel was determined, and the whole wheat root system was three-dimensionally re-constructed by using the morphological feature parameters in the root morphological model. Finally, based on the platform of OpenGL, and by integrating the technologies of texture mapping, lighting rendering, and collision detection, the 3D visualization of wheat root growth was realized. The 3D output of wheat root system from the model was vivid, which could realize the 3D root system visualization of different wheat cultivars under different water regimes and nitrogen application rates. This study could lay a technical foundation for further development of an integral visualization system of wheat plant.

Carbon sequestration in croplands is mainly driven by management leading to increased net primary production - evidence from long-term field experiments in Northern Europe

NASA Astrophysics Data System (ADS)

Kätterer, Thomas; Bolinder, Martin Anders; Börjesson, Gunnar; Kirchmann, Holger; Poeplau, Christopher

2014-05-01

Sustainable intensification of agriculture in regions with high production potential is a prerequisite for providing services for an increasing human population, not only food, animal feed, fiber and biofuel but also to promote biodiversity and the beauty of landscapes. We investigated the effect of different management practices on soil fertility and carbon sequestration in long-term experiments, mainly from Northern Europe. In addition, a meta-analysis on the effect of catch crops was conducted. Improved management of croplands was found to be a win-win strategy resulting in both increased soil fertility and carbon sequestration. We quantified the effect of different management practices such as N fertilization, organic amendments, catch crops and ley-arable rotations versus continuous annual cropping systems on soil carbon stocks. Increasing net primary productivity (NPP) was found to be the main driver for higher soil carbon storage. Mineral N fertilization increased soil carbon stocks by 1-2 kg C ha-1 for each kg of N applied to cropland. Ley-arable rotations, being a combination of annual and perennial crops, are expected to have C stocks intermediate between those of continuous grass- and croplands. A summary of data from 15 long-term sites showed that on average 0.5 Mg ha-1 yr-1 (range 0.3 to 1.1; median 0.4 Mg ha-1 yr-1) more carbon was retained in soils in ley-arable compared to exclusively annual systems, depending on species composition, management, soil depth and the duration of the studies. The annual C accumulation rate for catch crops determined in the meta-analysis was well within that range (0.32±0.08 Mg C ha-1 yr-1). Retention factors calculated for straw, manure, sawdust, peat, sewage sludge and composted household waste varied widely in a decadal time scale. Retention of root and rhizodeposit carbon was higher than for above-ground crop residues. We conclude that NPP is the major driver for C sequestration and emphasize that increased soil carbon stocks not always lead to net sequestration of atmospheric CO2 and that C sequestration not always leads to mitigation of greenhouse gas emissions. The consequences of different land use and management are discussed, taking into account two critical boundaries - the limited area of agricultural land on Earth and requirements to produce sufficient food, fibres and energy for a growing population.

A model framework to represent plant-physiology and rhizosphere processes in soil profile simulation models

NASA Astrophysics Data System (ADS)

Vanderborght, J.; Javaux, M.; Couvreur, V.; Schröder, N.; Huber, K.; Abesha, B.; Schnepf, A.; Vereecken, H.

2013-12-01

Plant roots play a crucial role in several key processes in soils. Besides their impact on biogeochemical cycles and processes, they also have an important influence on physical processes such as water flow and transport of dissolved substances in soils. Interaction between plant roots and soil processes takes place at different scales and ranges from the scale of an individual root and its directly surrounding soil or rhizosphere over the scale of a root system of an individual plant in a soil profile to the scale of vegetation patterns in landscapes. Simulation models that are used to predict water flow and solute transport in soil-plant systems mainly focus on the individual plant root system scale, parameterize single-root scale phenomena, and aggregate the root system scale to the vegetation scale. In this presentation, we will focus on the transition from the single root to the root system scale. Using high resolution non-invasive imaging techniques and methods, gradients in soil properties and states around roots and their difference from the bulk soil properties could be demonstrated. Recent developments in plant sciences provide new insights in the mechanisms that control water fluxes in plants and in the adaptation of root properties or root plasticity to changing soil conditions. However, since currently used approaches to simulate root water uptake neither resolve these small scale processes nor represent processes and controls within the root system, transferring this information to the whole soil-plant system scale is a challenge. Using a simulation model that describes flow and transport processes in the soil, resolves flow and transport towards individual roots, and describes flow and transport within the root system, such a transfer could be achieved. We present a few examples that illustrate: (i) the impact of changed rhizosphere hydraulic properties, (ii) the effect of root hydraulic properties and root system architecture, (iii) the regulation of plant transpiration by root-zone produced plant hormones, and (iv) the impact of salt accumulation at the soil-root interface on root water uptake. We further propose a framework how this process knowledge could be implemented in root zone simulation models that do not resolve small scale processes.

Water and Land Use Efficiency in Current and Potential Future US Corn and Brazilian Sugarcane Ethanol Systems

NASA Astrophysics Data System (ADS)

Warner, E. S.; Zhang, Y.; Newmark, R. L.

2012-12-01

Biofuels represent an opportunity for domestic fuel production from renewable energy sources with potential environmental and social benefits such as reducing greenhouse gas (GHG) and promoting rural development. However, as demand for biofuel continues to increase worldwide, concerns about land competition between food and fuel, excessive water usage and other unintended environmental consequences have grown. Through a comparative study between US corn ethanol and Brazilian sugarcane ethanol, we examine the energy, land, water and GHG performance of the two largest industrial fuel ethanol production systems in the world. Our comparisons include current and potential future systems with improved agronomic practices, crop yields, ethanol conversion processes, and utilization of agricultural residues. Our results suggest that the average water footprints of US corn ethanol and Brazilian sugarcane ethanol are fairly close (108 and 110 m3/GJ of ethanol, respectively) while the variations can range from 50 to 250 m3/GJ for sugarcane ethanol and 50 to380 m3/GJ for corn ethanol. Results emphasize the need to examine the water footprint within the context of local and regional climatic variability, water availability, competing uses (e.g. agricultural, industrial, and municipal water needs) and other ecosystem constraints. Research is under way (at the National Renewable Energy Laboratory and other institutions) to develop models to analyze water supply and demand at the watershed-scale for current and future biomass production, and to understand the tradeoffs among water supply, demand and quality due to more intensive agricultural practices and expansion of biofuels. Land use efficiency metrics, with regards to life cycle GHG emissions (without land use change) savings through gasoline displacement with ethanol, illustrate the progression of the biofuel industry and the importance of maximizing bioenergy production by utilizing both the crops and the residues. A recent average sugarcane ethanol system producing ethanol and electricity can save about 13 Mg CO2eq/ha of land compared to 12 in the early 2000s, while a recent average corn ethanol system saves about 6.2 Mg CO2eq/ha compared to near zero GHG savings in the early 2000s. The net energy balance (i.e., energy produced minus energy consumed) per ha for a recent average sugarcane ethanol system producing both ethanol and electricity is about 160 GJ/ha compared to 140 GJ/ha in early 2000s, while the recent average corn ethanol system achieves a net energy production of about 90 GJ/ha compares to only 30 GJ/ha in the early 2000s. The land use efficiency of corn and sugarcane ethanol systems, especially future systems, can vary depending on factors such as the assumed technologies, the suite of co-products produced, field practices, and technological learning. For example, projected future (2020) advanced sugarcane ethanol systems could save 22 Mg CO2eq/ha while an advanced corn ethanol system using integrated gasification of corn stover for electricity production could save 9.3Mg CO2eq/ha. Future advanced sugarcane ethanol systems could produce 210 GJ of net energy/ha while an advanced corn ethanol system using integrated gasification of corn stover for electricity production could achieve 110 GJ/ha.

Performance of a convective, infrared and combined infrared- convective heated conveyor-belt dryer.

PubMed

El-Mesery, Hany S; Mwithiga, Gikuru

2015-05-01

A conveyor-belt dryer was developed using a combined infrared and hot air heating system that can be used in the drying of fruits and vegetables. The drying system having two chambers was fitted with infrared radiation heaters and through-flow hot air was provided from a convective heating system. The system was designed to operate under either infrared radiation and cold air (IR-CA) settings of 2000 W/m(2) with forced ambient air at 30 °C and air flow of 0.6 m/s or combined infrared and hot air convection (IR-HA) dryer setting with infrared intensity set at 2000 W/m(2) and hot at 60 °C being blown through the dryer at a velocity of 0.6 m/s or hot air convection (HA) at an air temperature of 60 °C and air flow velocity 0.6 m/s but without infrared heating. Apple slices dried under the different dryer settings were evaluated for quality and energy requirements. It was found that drying of apple (Golden Delicious) slices took place in the falling rate drying period and no constant rate period of drying was observed under any of the test conditions. The IR-HA setting was 57.5 and 39.1 % faster than IR-CA and HA setting, respectively. Specific energy consumption was lower and thermal efficiency was higher for the IR-HA setting when compared to both IR-CA and HA settings. The rehydration ratio, shrinkage and colour properties of apples dried under IR-HA conditions were better than for either IR-CA or HA.

A Pipeline for 3D Digital Optical Phenotyping Plant Root System Architecture

NASA Astrophysics Data System (ADS)

Davis, T. W.; Shaw, N. M.; Schneider, D. J.; Shaff, J. E.; Larson, B. G.; Craft, E. J.; Liu, Z.; Kochian, L. V.; Piñeros, M. A.

2017-12-01

This work presents a new pipeline for digital optical phenotyping the root system architecture of agricultural crops. The pipeline begins with a 3D root-system imaging apparatus for hydroponically grown crop lines of interest. The apparatus acts as a self-containing dark room, which includes an imaging tank, motorized rotating bearing and digital camera. The pipeline continues with the Plant Root Imaging and Data Acquisition (PRIDA) software, which is responsible for image capturing and storage. Once root images have been captured, image post-processing is performed using the Plant Root Imaging Analysis (PRIA) command-line tool, which extracts root pixels from color images. Following the pre-processing binarization of digital root images, 3D trait characterization is performed using the next-generation RootReader3D software. RootReader3D measures global root system architecture traits, such as total root system volume and length, total number of roots, and maximum rooting depth and width. While designed to work together, the four stages of the phenotyping pipeline are modular and stand-alone, which provides flexibility and adaptability for various research endeavors.

Involvement of the cholinergic system of CA1 on harmane-induced amnesia in the step-down passive avoidance test.

PubMed

Nasehi, Mohammad; Sharifi, Shahrbano; Zarrindast, Mohammad Reza

2012-08-01

β-carboline alkaloids such as harmane (HA) are naturally present in the human food chain. They are derived from the plant Peganum harmala and have many cognitive effects. In the present study, effects of the nicotinic system of the dorsal hippocampus (CA1) on HA-induced amnesia and exploratory behaviors were examined. One-trial step-down and hole-board paradigms were used to assess memory retention and exploratory behaviors in adult male mice. Pre-training (15 mg/kg) but not pre-testing intraperitoneal (i.p.) administration of HA decreased memory formation but did not alter exploratory behaviors. Moreover, pre-testing administration of nicotine (0.5 µg/mouse, intra-CA1) decreased memory retrieval, but induced anxiogenic-like behaviors. On the other hand, pre-test intra-CA1 injection of ineffective doses of nicotine (0.1 and 0.25 µg/mouse) fully reversed HA-induced impairment of memory after pre-training injection of HA (15 mg/kg, i.p.) which did not alter exploratory behaviors. Furthermore, pre-testing administration of mecamylamine (0.5, 1 and 2 µg/mouse, intra-CA1) did not alter memory retrieval but fully reversed HA-induced impairment of memory after pre-training injection of HA (15 mg/kg, i.p.) which had no effect on exploratory behaviors. In conclusion, the present findings suggest the involvement of the nicotinic cholinergic system in the HA-induced impairment of memory formation.

Nitrogen Fertilization Effects on Productivity and Nitrogen Loss in Three Grass-Based Perennial Bioenergy Cropping Systems

PubMed Central

Duran, Brianna E. L.; Duncan, David S.; Oates, Lawrence G.; Kucharik, Christopher J.; Jackson, Randall D.

2016-01-01

Nitrogen (N) fertilization can greatly improve plant productivity but needs to be carefully managed to avoid harmful environmental impacts. Nutrient management guidelines aimed at reducing harmful forms of N loss such as nitrous oxide (N2O) emissions and nitrate (NO3-) leaching have been tailored for many cropping systems. The developing bioenergy industry is likely to make use of novel cropping systems, such as polycultures of perennial species, for which we have limited nutrient management experience. We studied how a switchgrass (Panicum virgatum) monoculture, a 5-species native grass mixture and an 18-species restored prairie responded to annual fertilizer applications of 56 kg N ha-1 in a field-scale agronomic trial in south-central Wisconsin over a 2-year period. We observed greater fertilizer-induced N2O emissions and sub-rooting zone NO3- concentrations in the switchgrass monoculture than in either polyculture. Fertilization increased aboveground net primary productivity in the polycultures, but not in the switchgrass monoculture. Switchgrass was generally more productive, while the two polycultures did not differ from each other in productivity or N loss. Our results highlight differences between polycultures and a switchgrass monoculture in responding to N fertilization. PMID:26991790

Contribution to the feeding ecology of the banded puffer fish Colomesus psittacus (Tetraodontidae) in north Brazilian mangrove creeks.

PubMed

Krumme, U; Keuthen, H; Saint-Paul, U; Villwock, W

2007-08-01

Stomach contents were examined from 102 banded puffer, Colomesus psittacus (Tetraodontidae), caught from intertidal mangrove creeks at diurnal neap tides between June and September, 1997 (early dry season) near Bragança (north Brazil). The study found that C. psittacus were specialized predators of Cirripedia (Balanus spp.) and Brachyuran crabs (Uca spp., Pachygrapsus gracilis) (mean: 58 and 38% by dry weight, respectively), emphasizing a short food chain in the mangrove system. Cirripedia and Brachyura dominated the diet in all size classes, however, the prey spectrum narrowed with fish size. The mean daily consumption of Cirripedia and Brachyura was 6.2% body weight of C. psittacus. On average C. psittacus consumed 100.3 g x ha(-1) x d(-1) of Cirripedia and 178.7 g x ha(-1) x d(-1) of Brachyura (wet weight). The predation on Brachyuran crabs--a significant driver of fluxes of organic matter and energy in the system--provides C. psittacus with an important ecological function in the mangrove food web. A plant-animal interaction is proposed where C. psittacus exerts a mutually beneficial cleaning function on the Aufwuchs (Cirripedia and associated epibiota) of Rhizophora mangle stilt roots. Our results and those of other studies suggest that C. psittacus encounter optimum foraging conditions in the mangrove at high inundations at daylight (spring tide-day) whereas darkness and low inundations are linked to poor foraging conditions (neap tide-night). The C. psittacus resource could be used as an alternative income in the region in terms of i) sustainable catch and filet processing for exports to East Asia, ii) developing certified aquaculture methods for breeding puffers for the aquarium trade.

Prediction of plantar shear stress distribution by artificial intelligence methods.

PubMed

Yavuz, Metin; Ocak, Hasan; Hetherington, Vincent J; Davis, Brian L

2009-09-01

Shear forces under the human foot are thought to be responsible for various foot pathologies such as diabetic plantar ulcers and athletic blisters. Frictional shear forces might also play a role in the metatarsalgia observed among hallux valgus (HaV) and rheumatoid arthritis (RA) patients. Due to the absence of commercial devices capable of measuring shear stress distribution, a number of linear models were developed. All of these have met with limited success. This study used nonlinear methods, specifically neural network and fuzzy logic schemes, to predict the distribution of plantar shear forces based on vertical loading parameters. In total, 73 subjects were recruited; 17 had diabetic neuropathy, 14 had HaV, 9 had RA, 11 had frequent foot blisters, and 22 were healthy. A feed-forward neural network (NN) and adaptive neurofuzzy inference system (NFIS) were built. These systems were then applied to a custom-built platform, which collected plantar pressure and shear stress data as subjects walked over the device. The inputs to both models were peak pressure, peak pressure-time integral, and time to peak pressure, and the output was peak resultant shear. Root-mean-square error (RMSE) values were calculated to test the models' accuracy. RMSE/actual shear ratio varied between 0.27 and 0.40 for NN predictions. Similarly, NFIS estimations resulted in a 0.28-0.37 ratio for local peak values in all subject groups. On the other hand, error percentages for global peak shear values were found to be in the range 11.4-44.1. These results indicate that there is no direct relationship between pressure and shear magnitudes. Future research should aim to decrease error levels by introducing shear stress dependent variables into the models.

Root Systems of Individual Plants, and the Biotic and Abiotic Factors Controlling Their Depth and Distribution: a Synthesis Using a Global Database.

NASA Astrophysics Data System (ADS)

Tumber-Davila, S. J.; Schenk, H. J.; Jackson, R. B.

2017-12-01

This synthesis examines plant rooting distributions globally, by doubling the number of entries in the Root Systems of Individual Plants database (RSIP) created by Schenk and Jackson. Root systems influence many processes, including water and nutrient uptake and soil carbon storage. Root systems also mediate vegetation responses to changing climatic and environmental conditions. Therefore, a collective understanding of the importance of rooting systems to carbon sequestration, soil characteristics, hydrology, and climate, is needed. Current global models are limited by a poor understanding of the mechanisms affecting rooting, carbon stocks, and belowground biomass. This improved database contains an extensive bank of records describing the rooting system of individual plants, as well as detailed information on the climate and environment from which the observations are made. The expanded RSIP database will: 1) increase our understanding of rooting depths, lateral root spreads and above and belowground allometry; 2) improve the representation of plant rooting systems in Earth System Models; 3) enable studies of how climate change will alter and interact with plant species and functional groups in the future. We further focus on how plant rooting behavior responds to variations in climate and the environment, and create a model that can predict rooting behavior given a set of environmental conditions. Preliminary results suggest that high potential evapotranspiration and seasonality of precipitation are indicative of deeper rooting after accounting for plant growth form. When mapping predicted deep rooting by climate, we predict deepest rooting to occur in equatorial South America, Africa, and central India.

Quantifying above- and belowground biomass carbon loss with forest conversion in tropical lowlands of Sumatra (Indonesia).

PubMed

Kotowska, Martyna M; Leuschner, Christoph; Triadiati, Triadiati; Meriem, Selis; Hertel, Dietrich

2015-10-01

Natural forests in South-East Asia have been extensively converted into other land-use systems in the past decades and still show high deforestation rates. Historically, lowland forests have been converted into rubber forests, but more recently, the dominant conversion is into oil palm plantations. While it is expected that the large-scale conversion has strong effects on the carbon cycle, detailed studies quantifying carbon pools and total net primary production (NPPtotal ) in above- and belowground tree biomass in land-use systems replacing rainforest (incl. oil palm plantations) are rare so far. We measured above- and belowground carbon pools in tree biomass together with NPPtotal in natural old-growth forests, 'jungle rubber' agroforests under natural tree cover, and rubber and oil palm monocultures in Sumatra. In total, 32 stands (eight plot replicates per land-use system) were studied in two different regions. Total tree biomass in the natural forest (mean: 384 Mg ha(-1) ) was more than two times higher than in jungle rubber stands (147 Mg ha(-1) ) and >four times higher than in monoculture rubber and oil palm plantations (78 and 50 Mg ha(-1) ). NPPtotal was higher in the natural forest (24 Mg ha(-1)  yr(-1) ) than in the rubber systems (20 and 15 Mg ha(-1)  yr(-1) ), but was highest in the oil palm system (33 Mg ha(-1)  yr(-1) ) due to very high fruit production (15-20 Mg ha(-1)  yr(-1) ). NPPtotal was dominated in all systems by aboveground production, but belowground productivity was significantly higher in the natural forest and jungle rubber than in plantations. We conclude that conversion of natural lowland forest into different agricultural systems leads to a strong reduction not only in the biomass carbon pool (up to 166 Mg C ha(-1) ) but also in carbon sequestration as carbon residence time (i.e. biomass-C:NPP-C) was 3-10 times higher in the natural forest than in rubber and oil palm plantations. © 2015 John Wiley & Sons Ltd.

The Importance of Juvenile Root Traits for Crop Yields

NASA Astrophysics Data System (ADS)

White, Philip; Adu, Michael; Broadley, Martin; Brown, Lawrie; Dupuy, Lionel; George, Timothy; Graham, Neil; Hammond, John; Hayden, Rory; Neugebauer, Konrad; Nightingale, Mark; Ramsay, Gavin; Thomas, Catherine; Thompson, Jacqueline; Wishart, Jane; Wright, Gladys

2014-05-01

Genetic variation in root system architecture (RSA) is an under-exploited breeding resource. This is partly a consequence of difficulties in the rapid and accurate assessment of subterranean root systems. However, although the characterisation of root systems of large plants in the field are both time-consuming and labour-intensive, high-throughput (HTP) screens of root systems of juvenile plants can be performed in the field, glasshouse or laboratory. It is hypothesised that improving the root systems of juvenile plants can accelerate access to water and essential mineral elements, leading to rapid crop establishment and, consequently, greater yields. This presentation will illustrate how aspects of the juvenile root systems of potato (Solanum tuberosum L.) and oilseed rape (OSR; Brassica napus L.) correlate with crop yields and examine the reasons for such correlations. It will first describe the significant positive relationships between early root system development, phosphorus acquisition, canopy establishment and eventual yield among potato genotypes. It will report the development of a glasshouse assay for root system architecture (RSA) of juvenile potato plants, the correlations between root system architectures measured in the glasshouse and field, and the relationships between aspects of the juvenile root system and crop yields under drought conditions. It will then describe the development of HTP systems for assaying RSA of OSR seedlings, the identification of genetic loci affecting RSA in OSR, the development of mathematical models describing resource acquisition by OSR, and the correlations between root traits recorded in the HTP systems and yields of OSR in the field.

Rhizoslides: paper-based growth system for non-destructive, high throughput phenotyping of root development by means of image analysis.

PubMed

Le Marié, Chantal; Kirchgessner, Norbert; Marschall, Daniela; Walter, Achim; Hund, Andreas

2014-01-01

A quantitative characterization of root system architecture is currently being attempted for various reasons. Non-destructive, rapid analyses of root system architecture are difficult to perform due to the hidden nature of the root. Hence, improved methods to measure root architecture are necessary to support knowledge-based plant breeding and to analyse root growth responses to environmental changes. Here, we report on the development of a novel method to reveal growth and architecture of maize root systems. The method is based on the cultivation of different root types within several layers of two-dimensional, large (50 × 60 cm) plates (rhizoslides). A central plexiglass screen stabilizes the system and is covered on both sides with germination paper providing water and nutrients for the developing root, followed by a transparent cover foil to prevent the roots from falling dry and to stabilize the system. The embryonic roots grow hidden between a Plexiglas surface and paper, whereas crown roots grow visible between paper and the transparent cover. Long cultivation with good image quality up to 20 days (four fully developed leaves) was enhanced by suppressing fungi with a fungicide. Based on hyperspectral microscopy imaging, the quality of different germination papers was tested and three provided sufficient contrast to distinguish between roots and background (segmentation). Illumination, image acquisition and segmentation were optimised to facilitate efficient root image analysis. Several software packages were evaluated with regard to their precision and the time investment needed to measure root system architecture. The software 'Smart Root' allowed precise evaluation of root development but needed substantial user interference. 'GiaRoots' provided the best segmentation method for batch processing in combination with a good analysis of global root characteristics but overestimated root length due to thinning artefacts. 'WhinRhizo' offered the most rapid and precise evaluation of root lengths in diameter classes, but had weaknesses with respect to image segmentation and analysis of root system architecture. A new technique has been established for non-destructive root growth studies and quantification of architectural traits beyond seedlings stages. However, automation of the scanning process and appropriate software remains the bottleneck for high throughput analysis.

Salt marsh ecosystem biogeochemical responses to nutrient enrichment: a paired 15N tracer study.

PubMed

Drake, D C; Peterson, Bruce J; Galván, Kari A; Deegan, Linda A; Hopkinson, Charles; Johnson, J Michael; Koop-Jakobsen, K; Lemay, Lynsey E; Picard, Christian

2009-09-01

We compared processing and fate of dissolved NO3- in two New England salt marsh ecosystems, one receiving natural flood tide concentrations of approximately 1-4 micromol NO3-/ L and the other receiving experimentally fertilized flood tides containing approximately 70-100 micromol NO3-/ L. We conducted simultaneous 15NO3- (isotope) tracer additions from 23 to 28 July 2005 in the reference (8.4 ha) and fertilized (12.4 ha) systems to compare N dynamics and fate. Two full tidal cycles were intensively studied during the paired tracer additions. Resulting mass balances showed that essentially 100% (0.48-0.61 mol NO3-N.ha(-1).h(-1)) of incoming NO3- was assimilated, dissimilated, sorbed, or sedimented (processed) within a few hours in the reference system when NO3- concentrations were 1.3-1.8 micromol/L. In contrast, only 50-60% of incoming NO3- was processed in the fertilized system when NO3- concentrations were 84-96 micromol/L; the remainder was exported in ebb tidewater. Gross NO3- processing was approximately 40 times higher in the fertilized system at 19.34-24.67 mol NO3-N.ha(-1).h(-1). Dissimilatory nitrate reduction to ammonium was evident in both systems during the first 48 h of the tracer additions but <1% of incoming 15NO3- was exported as 15NH4+. Nitrification rates calculated by 15NO3- dilution were 6.05 and 4.46 mol.ha(-1).h(-1) in the fertilized system but could not be accurately calculated in the reference system due to rapid (<4 h) NO3- turnover. Over the five-day paired tracer addition, sediments sequestered a small fraction of incoming NO3-, although the efficiency of sequestration was 3.8% in the reference system and 0.7% in the fertilized system. Gross sediment N sequestration rates were similar at 13.5 and 12.6 mol.ha(-1).d(-1), respectively. Macrophyte NO3- uptake efficiency, based on tracer incorporation in aboveground tissues, was considerably higher in the reference system (16.8%) than the fertilized system (2.6%), although bulk uptake of NO3- by plants was lower in the reference system (1.75 mol NO3-.ha(-1).d(-1)) than the fertilized system (approximately 10 mol NO3-.ha(-1).d(-1)). Nitrogen processing efficiency decreased with NO3- load in all pools, suggesting that the nutrient processing capacity of the marsh ecosystem was exceeded in the fertilized marsh.

Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems

PubMed Central

2013-01-01

This paper presents an original spit-and-combine imaging procedure that enables the complete vectorization of complex root systems grown in rhizotrons. The general principle of the method is to (1) separate the root system into a small number of large pieces to reduce root overlap, (2) scan these pieces one by one, (3) analyze separate images with a root tracing software and (4) combine all tracings into a single vectorized root system. This method generates a rich dataset containing morphological, topological and geometrical information of entire root systems grown in rhizotrons. The utility of the method is illustrated with a detailed architectural analysis of a 20-day old maize root system, coupled with a spatial analysis of water uptake patterns. PMID:23286457

Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems.

PubMed

Lobet, Guillaume; Draye, Xavier

2013-01-04

: This paper presents an original spit-and-combine imaging procedure that enables the complete vectorization of complex root systems grown in rhizotrons. The general principle of the method is to (1) separate the root system into a small number of large pieces to reduce root overlap, (2) scan these pieces one by one, (3) analyze separate images with a root tracing software and (4) combine all tracings into a single vectorized root system. This method generates a rich dataset containing morphological, topological and geometrical information of entire root systems grown in rhizotrons. The utility of the method is illustrated with a detailed architectural analysis of a 20-day old maize root system, coupled with a spatial analysis of water uptake patterns.

High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development.

PubMed

Clark, Randy T; Famoso, Adam N; Zhao, Keyan; Shaff, Jon E; Craft, Eric J; Bustamante, Carlos D; McCouch, Susan R; Aneshansley, Daniel J; Kochian, Leon V

2013-02-01

High-throughput phenotyping of root systems requires a combination of specialized techniques and adaptable plant growth, root imaging and software tools. A custom phenotyping platform was designed to capture images of whole root systems, and novel software tools were developed to process and analyse these images. The platform and its components are adaptable to a wide range root phenotyping studies using diverse growth systems (hydroponics, paper pouches, gel and soil) involving several plant species, including, but not limited to, rice, maize, sorghum, tomato and Arabidopsis. The RootReader2D software tool is free and publicly available and was designed with both user-guided and automated features that increase flexibility and enhance efficiency when measuring root growth traits from specific roots or entire root systems during large-scale phenotyping studies. To demonstrate the unique capabilities and high-throughput capacity of this phenotyping platform for studying root systems, genome-wide association studies on rice (Oryza sativa) and maize (Zea mays) root growth were performed and root traits related to aluminium (Al) tolerance were analysed on the parents of the maize nested association mapping (NAM) population. © 2012 Blackwell Publishing Ltd.

The Uncertainty of Biomass Estimates from Modeled ICESat-2 Returns Across a Boreal Forest Gradient

NASA Technical Reports Server (NTRS)

Montesano, P. M.; Rosette, J.; Sun, G.; North, P.; Nelson, R. F.; Dubayah, R. O.; Ranson, K. J.; Kharuk, V.

2014-01-01

The Forest Light (FLIGHT) radiative transfer model was used to examine the uncertainty of vegetation structure measurements from NASA's planned ICESat-2 photon counting light detection and ranging (LiDAR) instrument across a synthetic Larix forest gradient in the taiga-tundra ecotone. The simulations demonstrate how measurements from the planned spaceborne mission, which differ from those of previous LiDAR systems, may perform across a boreal forest to non-forest structure gradient in globally important ecological region of northern Siberia. We used a modified version of FLIGHT to simulate the acquisition parameters of ICESat-2. Modeled returns were analyzed from collections of sequential footprints along LiDAR tracks (link-scales) of lengths ranging from 20 m-90 m. These link-scales traversed synthetic forest stands that were initialized with parameters drawn from field surveys in Siberian Larix forests. LiDAR returns from vegetation were compiled for 100 simulated LiDAR collections for each 10 Mg · ha(exp -1) interval in the 0-100 Mg · ha(exp -1) above-ground biomass density (AGB) forest gradient. Canopy height metrics were computed and AGB was inferred from empirical models. The root mean square error (RMSE) and RMSE uncertainty associated with the distribution of inferred AGB within each AGB interval across the gradient was examined. Simulation results of the bright daylight and low vegetation reflectivity conditions for collecting photon counting LiDAR with no topographic relief show that 1-2 photons are returned for 79%-88% of LiDAR shots. Signal photons account for approximately 67% of all LiDAR returns, while approximately 50% of shots result in 1 signal photon returned. The proportion of these signal photon returns do not differ significantly (p greater than 0.05) for AGB intervals greater than 20 Mg · ha(exp -1). The 50m link-scale approximates the finest horizontal resolution (length) at which photon counting LiDAR collection provides strong model fits and minimizes forest structure uncertainty in the synthetic Larix stands. At this link-scale AGB greater than 20 Mg · ha(exp -1) has AGB error from 20-50% at the 95% confidence level. These results suggest that the theoretical sensitivity of ICESat-2 photon counting LiDAR measurements alone lack the ability to consistently discern differences in inferred AGB at 10 Mg · ha(exp -1) intervals in sparse forests characteristic of the taiga-tundra ecotone.

Hyaluronic acid based hydrogel system for soft tissue regeneration and drug delivery

NASA Astrophysics Data System (ADS)

Jha, Amit Kumar

We have developed hyaluronic acid (HA)-based, biomimetic hydrogel matrices that are hierarchically structured, mechanically robust and biologically active. Specifically, HA-based hydrogel particles (HGPs) with controlled sizes, defined porosity, and improved stability were synthesized using different inverse emulsion systems and crosslinking chemistries. The resultant particles either contained residual functional groups or were rendered reactive by subsequent chemical modifications. HA-based doubly crosslinked networks (DXNs) were synthesized via covalent crosslinking of HA HGPs with soluble HA macromers carrying mutually reactive functional groups. These hybrid matrices are hierarchical in nature, consisting of densely crosslinked HGPs integrated in a loosely connected secondary matrix. Their mechanical properties and degradation kinetics can be readily tuned by varying the particle size, functional group density, intra- and interparticle crosslinking. To improve the biological functions of HA HGPs, perlecan domain I (PlnDI), a basement membrane proteoglycan that has strong affinity for various heparin binding growth factors (HBGFs), was successfully conjugated to the particles through the core protein via a flexible poly(ethylene glycol) (PEG) linker. The immobilized PlnDI maintains its ability to bind bone morphogenetic proteins (BMP-2) and modulates its in vitro release. A similar, sustained release of BMP-2 was achieved by encapsulating BMP-2-loaded HGPs within a photocrosslinked HA matrix. When encapsulated in HA DXNs, primary bovine chondrocytes were able to maintain their phenotype, proliferate readily and produce abundant glycosaminoglycan. Finally, cell-adhesive HA DXNs were fabricated by encapsulating gelatin-decorated HA HGPs in a secondary HA matrix. Human MSCs were shown to adhere to the composite matrix through the focal adhesion sites clustered on particle surface. The cell-adhesive composite matrices supported hMSC proliferation and migration into the gels. Human MSCs were undifferentiated during the early time points of culture, however differentiated into osteoblast phenotype after 28 days of culture. In summary, the HA-based hydrogel matrices are hierarchically structured, mechanically robust and enzymatically stable, capable of mediating cellular functions through the spatial and temporal presentation of defined biological cues. These hydrogel systems are promising candidates for soft tissue regeneration.

Separation of soil respiration: a site-specific comparison of partition methods

NASA Astrophysics Data System (ADS)

Comeau, Louis-Pierre; Lai, Derrick Y. F.; Jinglan Cui, Jane; Farmer, Jenny

2018-06-01

Without accurate data on soil heterotrophic respiration (Rh), assessments of soil carbon (C) sequestration rate and C balance are challenging to produce. Accordingly, it is essential to determine the contribution of the different sources of the total soil CO2 efflux (Rs) in different ecosystems, but to date, there are still many uncertainties and unknowns regarding the soil respiration partitioning procedures currently available. This study compared the suitability and relative accuracy of five different Rs partitioning methods in a subtropical forest: (1) regression between root biomass and CO2 efflux, (2) lab incubations with minimally disturbed soil microcosm cores, (3) root exclusion bags with hand-sorted roots, (4) root exclusion bags with intact soil blocks and (5) soil δ13C-CO2 natural abundance. The relationship between Rh and soil moisture and temperature was also investigated. A qualitative evaluation table of the partition methods with five performance parameters was produced. The Rs was measured weekly from 3 February to 19 April 2017 and found to average 6.1 ± 0.3 Mg C ha-1 yr-1. During this period, the Rh measured with the in situ mesh bags with intact soil blocks and hand-sorted roots was estimated to contribute 49 ± 7 and 79 ± 3 % of Rs, respectively. The Rh percentages estimated with the root biomass regression, microcosm incubation and δ13C-CO2 natural abundance were 54 ± 41, 8-17 and 61 ± 39 %, respectively. Overall, no systematically superior or inferior Rs partition method was found. The paper discusses the strengths and weaknesses of each technique with the conclusion that combining two or more methods optimizes Rh assessment reliability.

Root evolution at the base of the lycophyte clade: insights from an Early Devonian lycophyte

PubMed Central

Matsunaga, Kelly K. S.; Tomescu, Alexandru M. F.

2016-01-01

Background and Aims The evolution of complex rooting systems during the Devonian had significant impacts on global terrestrial ecosystems and the evolution of plant body plans. However, detailed understanding of the pathways of root evolution and the architecture of early rooting systems is currently lacking. We describe the architecture and resolve the structural homology of the rooting system of an Early Devonian basal lycophyte. Insights gained from these fossils are used to address lycophyte root evolution and homology. Methods Plant fossils are preserved as carbonaceous compressions at Cottonwood Canyon (Wyoming), in the Lochkovian–Pragian (∼411 Ma; Early Devonian) Beartooth Butte Formation. We analysed 177 rock specimens and documented morphology, cuticular anatomy and structural relationships, as well as stratigraphic position and taphonomic conditions. Key Results The rooting system of the Cottonwood Canyon lycophyte is composed of modified stems that bear fine, dichotomously branching lateral roots. These modified stems, referred to as root-bearing axes, are produced at branching points of the above-ground shoot system. Root-bearing axes preserved in growth position exhibit evidence of positive gravitropism, whereas the lateral roots extend horizontally. Consistent recurrence of these features in successive populations of the plant preserved in situ demonstrates that they represent constitutive structural traits and not opportunistic responses of a flexible developmental programme. Conclusions This is the oldest direct evidence for a rooting system preserved in growth position. These rooting systems, which can be traced to a parent plant, include some of the earliest roots known to date and demonstrate that substantial plant–substrate interactions were under way by Early Devonian time. The morphological relationships between stems, root-bearing axes and roots corroborate evidence that positive gravitropism and root identity were evolutionarily uncoupled in lycophytes, and challenge the hypothesis that roots evolved from branches of the above-ground axial system, suggesting instead that lycophyte roots arose as a novel organ. PMID:26921730

Enhancement of Fenton oxidation for removing organic matter from hypersaline solution by accelerating ferric system with hydroxylamine hydrochloride and benzoquinone.

PubMed

Peng, Siwei; Zhang, Weijun; He, Jie; Yang, Xiaofang; Wang, Dongsheng; Zeng, Guisheng

2016-03-01

Fenton oxidation is generally inhibited in the presence of a high concentration of chloride ions. This study investigated the feasibility of using benzoquinone (BQ) and hydroxylamine hydrochloride (HA) as Fenton enhancers for the removal of glycerin from saline water under ambient temperature by accelerating the ferric system. It was found that organics removal was not obviously affected by chloride ions of low concentration (less than 0.1mol/L), while the mineralization rate was strongly inhibited in the presence of a large amount of chloride ions. In addition, ferric hydrolysis-precipitation was significantly alleviated in the presence of HA and BQ, and HA was more effective in reducing ferric ions into ferrous ions than HA, while the H2O2 decomposition rate was higher in the BQ-Fenton system. Electron spin resonance analysis revealed that OH production was reduced in high salinity conditions, while it was enhanced after the addition of HA and BQ (especially HA). This study provided a possible solution to control and alleviate the inhibitory effect of chloride ions on the Fenton process for organics removal. Copyright © 2015. Published by Elsevier B.V.

The influence of cover crops and tillage on actual and potential soil erosion in an olive grove

NASA Astrophysics Data System (ADS)

Sastre, Blanca; Bienes, Ramón; García-Díaz, Andrés; Panagopoulos, Thomas; José Marqués, Maria

2014-05-01

The study was carried out in an olive grove in central Spain (South of Madrid; Tagus River Basin). In this semi-arid zone, the annual mean temperature is 13.8 ºC and the annual precipitation is 395 mm. Olive groves are planted in an erosion prone area due to steep slopes up to 15%. Soil is classified as Typic Haploxerept with clay loam texture. The land studied was formerly a vineyard, but it was replaced by the studied olive grove in 2004. It covers approximately 3 ha and olive trees are planted every 6 x 7 metres. They were usually managed by tillage to decrease weed competition. This conventional practice results in a wide surface of bare soil prone to erosion processes. In the long term soil degradation may lead to increase the desertification risk in the area. Storms have important consequences in this shallow and vulnerable soil, as more than 90 Mg ha-1 have been measured after one day with 40 mm of rainfall. In order to avoid this situation, cover crops between the olive trees were planted three years ago: sainfoin (Onobrychis viciifolia), barley (Hordeum vulgare), and purple false brome (Brachypodium distachyon), and they were compared with annual spontaneous vegetation after a minimum tillage treatment (ASV). The results regarding erosion control were positive. We observed (Oct. 2012/Sept. 2013) annual soil loss up to 11 Mg ha-1 in ASV, but this figure was reduced in the sown covers, being 8 Mg ha-1 in sainfoin treatment, 3,7 Mg ha-1 in barley treatment, and only 1,5 Mg ha-1 in false brome treatment. Those results are used to predict the risk of erosion in long term. Moreover, soil organic carbon (SOC) increased with treatments, this is significant as it reduces soil erodibility. The increases were found both in topsoil (up to 5 cm) and more in depth, in the root zone (from 5 to 10 cm depth). From higher to lower SOC values we found the false brome (1.05%), barley (0.92%), ASV (0.79%) and sainfoin (0.71%) regarding topsoil. In the root zone (5-10 cm depth) we found 0.76% in false brome and ASV, 0.70% in barley and 0.58% in sainfoin. Other important variable to estimate erosion processes is soil permeability. During the period of study there were no significant differences between treatments. An average of 45±20 mm h-1 was measured. This study addresses the comparison between soil erosion rates measured on the ground with soil erosion risk estimated by models. Mapping soil risk can provide the evidence to demonstrate that economic investments in research, good practices and agri-environment payments are worth to achieve sustainable land management. The use of case studies is usually recommended to help in the dissemination of research. This case also includes the influence of treatments in production and quality of olive oil to respond to the needs of land users.

Morphological and molecular identification of the ectomycorrhizal association of Lactarius fumosibrunneus and Fagus grandifolia var. mexicana trees in eastern Mexico.

PubMed

Garay-Serrano, Edith; Bandala, Victor Manuel; Montoya, Leticia

2012-11-01

A population of Fagus grandifolia var. mexicana (covering ca. 4.7 ha) is established in a montane cloud forest refuge at Acatlan Volcano in eastern Mexico (Veracruz State), and it represents one of only ten populations of this species known to occur in the country (each stand covers ca. 2-35 ha in extension) and one of the southernmost in the continent. Sporocarps of several ectomycorrhizal macrofungi have been observed in the area, and among them, individuals of the genus Lactarius are common in the forest. However, the morphological and molecular characterization of ectomycorrhizae is still in development. Currently, two species of Lactarius have been previously documented in the area. Through the phylogenetic analysis of the internal transcribed spacer (ITS) region from basidiomes and ectomycorrhizae, we identified the Lactarius fumosibrunneus ectomycorrhiza. The host, F. grandifolia var. mexicana, was determined comparing the amplified ITS sequence from ectomycorrhizal root tips in the GenBank database with Basic Local Alignment Search Tool. The mycorrhizal system of L. fumosibrunneus is monopodial-pyramidal, characterized by its shiny, white to silver and pruinose surface, secreting a white latex when damaged, composed of three plectenchymatous mantle layers, with diverticulated terminal elements at the outer mantle. It lacks emanating hyphae, rhizomorphs, and sclerotia. A detailed morphological and anatomical description, illustrations, and photographs of the ectomycorrhiza are presented. The comparison of L. fumosibrunneus and other Lactarius belonging to subgenus Plinthogalus is presented.

Wound healing effects of deoxyshikonin isolated from Jawoongo: In vitro and in vivo studies.

PubMed

Park, Jun Yeon; Kwak, Jin Ho; Kang, Ki Sung; Jung, Eun Bee; Lee, Dong-Soo; Lee, Sanghyun; Jung, Yujung; Kim, Ki Hyun; Hwang, Gwi Seo; Lee, Hye Lim; Yamabe, Noriko; Kim, Su-Nam

2017-03-06

Jawoongo is a traditional drug ointment (with a traditional botanic formula) used for the treatment of burns and wounds in Korea. One of the components of Jawoongo is Lithospermi Radix (LR, the dried root of Lithospermum erythrorhizon Siebold & Zucc., also known as Zicao or Gromwell), which contains deoxyshikonin and its derivatives. The aim of the present study was to investigate the effects of deoxyshikonin on wound healing. The effects of LR extract and deoxyshikonin on tube formation and migration were measured in human umbilical vein vascular endothelial cells (HUVEC) and HaCaT cells, respectively. We evaluated protein expression of mitogen-activated protein kinase (MAPK) activation by Western blotting. The wound healing effects of deoxyshikonin was assessed in a mouse model of cutaneous wounds. The results showed that deoxyshikonin enhanced tube formation in HUVEC and migration in HaCaT cells. From the western blot analysis, we found that deoxyshikonin stimulated the phosphorylation of p38 and extracellular signal-regulated kinase (ERK) in HaCaT cells. Moreover, 20µm deoxyshikonin-treated groups showed accelerated wound closure compared with the controls in a mouse model of cutaneous wounds. In conclusion, the current data indicate that deoxyshikonin treatment elevated tube formation in HUVECs, and that deoxyshikonin-induced proliferation and migration in HaCaT cells were mediated by the activation of ERK and p38 MAPKs, respectively. Collectively, these data suggest that deoxyshikonin in Jawoongo must be an active compound for may be wound healing. Copyright © 2017 Elsevier Ireland Ltd. All rights reserved.

Benchmark map of forest carbon stocks in tropical regions across three continents

PubMed Central

Saatchi, Sassan S.; Harris, Nancy L.; Brown, Sandra; Lefsky, Michael; Mitchard, Edward T. A.; Salas, William; Zutta, Brian R.; Buermann, Wolfgang; Lewis, Simon L.; Hagen, Stephen; Petrova, Silvia; White, Lee; Silman, Miles; Morel, Alexandra

2011-01-01

Developing countries are required to produce robust estimates of forest carbon stocks for successful implementation of climate change mitigation policies related to reducing emissions from deforestation and degradation (REDD). Here we present a “benchmark” map of biomass carbon stocks over 2.5 billion ha of forests on three continents, encompassing all tropical forests, for the early 2000s, which will be invaluable for REDD assessments at both project and national scales. We mapped the total carbon stock in live biomass (above- and belowground), using a combination of data from 4,079 in situ inventory plots and satellite light detection and ranging (Lidar) samples of forest structure to estimate carbon storage, plus optical and microwave imagery (1-km resolution) to extrapolate over the landscape. The total biomass carbon stock of forests in the study region is estimated to be 247 Gt C, with 193 Gt C stored aboveground and 54 Gt C stored belowground in roots. Forests in Latin America, sub-Saharan Africa, and Southeast Asia accounted for 49%, 25%, and 26% of the total stock, respectively. By analyzing the errors propagated through the estimation process, uncertainty at the pixel level (100 ha) ranged from ±6% to ±53%, but was constrained at the typical project (10,000 ha) and national (>1,000,000 ha) scales at ca. ±5% and ca. ±1%, respectively. The benchmark map illustrates regional patterns and provides methodologically comparable estimates of carbon stocks for 75 developing countries where previous assessments were either poor or incomplete. PMID:21628575

The Effects of Tree Species on Soil Organic Carbon Content and Distribution in South Korea.

NASA Astrophysics Data System (ADS)

Oh, N. H.; Cha, J. Y.; Cha, Y. K.

2016-12-01

Soil organic carbon (SOC) content of forests is controlled by the dynamic balance between photosynthesis and respiration. Changes of tree species can affect the SOC content both directly by alteration in quantity and quality of newly photosynthesized inputs, and indirectly by changes in soil conditions such as root distribution and soil microbial communities. Although many studies have been conducted on the effects of tree species on SOC, the results are mixed possibly due to the locality and the scales of the studies. This can be overcome by systematic analysis on extensively collected samples of forest floors and soils. We investigated the impacts of tree species, dominantly pines (Pinus) and oaks (Quercus), on SOC stock and distribution in South Korea by conducting ANOVA and GLM analyses using the Korean National Forest Inventory data collected from 640 plots during 2007-2010. The trees used in the data were relatively young with 67% of them being less than 40 years old because of a nation-wide reforestation program started in the 1970s. The results demonstrated a clear contrast between Pinus and Quercus, depending on soil horizons. Forest floor SOC under Pinus was 6.98 ton C/ha, significantly higher than 5.30 ton C/ha under Quercus. In contrast, SOC in mineral soils was 51.31 ton C/ha under Pinus, significantly lower than 64.76 ton C/ha under Quercus. The total SOC content including both forest floor and mineral soils was significantly higher under Quercus than Pinus, suggesting that Quercus has a potential to sequester more atmospheric CO2 in the forests in Korea.

Effects of Trichothecene Production on the Plant Defense Response and Fungal Physiology: Overexpression of the Trichoderma arundinaceum tri4 Gene in T. harzianum.

PubMed

Cardoza, R E; McCormick, S P; Malmierca, M G; Olivera, E R; Alexander, N J; Monte, E; Gutiérrez, S

2015-09-01

Trichothecenes are fungal sesquiterpenoid compounds, the majority of which have phytotoxic activity. They contaminate food and feed stocks, resulting in potential harm to animals and human beings. Trichoderma brevicompactum and T. arundinaceum produce trichodermin and harzianum A (HA), respectively, two trichothecenes that show different bioactive properties. Both compounds have remarkable antibiotic and cytotoxic activities, but in addition, trichodermin is highly phytotoxic, while HA lacks this activity when analyzed in vivo. Analysis of Fusarium trichothecene intermediates led to the conclusion that most of them, with the exception of the hydrocarbon precursor trichodiene (TD), have a detectable phytotoxic activity which is not directly related to the structural complexity of the intermediate. In the present work, the HA intermediate 12,13-epoxytrichothec-9-ene (EPT) was produced by expression of the T. arundinaceum tri4 gene in a transgenic T. harzianum strain that already produces TD after transformation with the T. arundinaceum tri5 gene. Purified EPT did not show antifungal or phytotoxic activity, while purified HA showed both antifungal and phytotoxic activities. However, the use of the transgenic T. harzianum tri4 strain induced a downregulation of defense-related genes in tomato plants and also downregulated plant genes involved in fungal root colonization. The production of EPT by the transgenic tri4 strain raised levels of erg1 expression and reduced squalene accumulation while not affecting levels of ergosterol. Together, these results indicate the complex interactions among trichothecene intermediates, fungal antagonists, and host plants. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Effects of Trichothecene Production on the Plant Defense Response and Fungal Physiology: Overexpression of the Trichoderma arundinaceum tri4 Gene in T. harzianum

PubMed Central

Cardoza, R. E.; McCormick, S. P.; Malmierca, M. G.; Olivera, E. R.; Alexander, N. J.; Monte, E.

2015-01-01

Trichothecenes are fungal sesquiterpenoid compounds, the majority of which have phytotoxic activity. They contaminate food and feed stocks, resulting in potential harm to animals and human beings. Trichoderma brevicompactum and T. arundinaceum produce trichodermin and harzianum A (HA), respectively, two trichothecenes that show different bioactive properties. Both compounds have remarkable antibiotic and cytotoxic activities, but in addition, trichodermin is highly phytotoxic, while HA lacks this activity when analyzed in vivo. Analysis of Fusarium trichothecene intermediates led to the conclusion that most of them, with the exception of the hydrocarbon precursor trichodiene (TD), have a detectable phytotoxic activity which is not directly related to the structural complexity of the intermediate. In the present work, the HA intermediate 12,13-epoxytrichothec-9-ene (EPT) was produced by expression of the T. arundinaceum tri4 gene in a transgenic T. harzianum strain that already produces TD after transformation with the T. arundinaceum tri5 gene. Purified EPT did not show antifungal or phytotoxic activity, while purified HA showed both antifungal and phytotoxic activities. However, the use of the transgenic T. harzianum tri4 strain induced a downregulation of defense-related genes in tomato plants and also downregulated plant genes involved in fungal root colonization. The production of EPT by the transgenic tri4 strain raised levels of erg1 expression and reduced squalene accumulation while not affecting levels of ergosterol. Together, these results indicate the complex interactions among trichothecene intermediates, fungal antagonists, and host plants. PMID:26150463

Selection, Design and Applications of Solid Binding Peptides for Controlled Biomineralization

NASA Astrophysics Data System (ADS)

Gungormus, Mustafa

The regulated formation of inorganic minerals in living systems is called biomineralization. The mineralization processes of biogenic minerals are strictly regulated by a specific set of biomolecules, typically by proteins. Biologically formed calcium phosphates (hydroxyapatite (HA) in particular) are almost always nano-dimensional and nano-crystalline and are formed in vivo under mild conditions. The importance of understanding the molecular mechanisms underlying biological mineralization is underscored by the diseases associated with ectopic calcification or defects of skeletal mineralization. Proteins that mediate the mineralization process offer us a template for understanding how to potentially enhance the treatment of calcified tissue defects. However, the complexity and the number of proteins involved even in a rather simple biomineralization process can be daunting. The goal of this research was to identify short peptides through peptide-display libraries and demonstrate the utility of these peptides in better understanding the molecular mechanisms underlying biomineralization and as potential therapeutic agents in repairing calcified tissue defects. Using the phage-peptide display library, we have identified peptides that have affinity to HA and can regulate the formation of HA crystals. Utilizing the sequence knowledge obtained, we have identified putative functional domains within amelogenin; a naturally existing mineralization related protein, which, in turn, may provide a better understanding of the formation of dental enamel. These peptides also have the potential to be used to repair calcified tissue defects. To investigate this, we have developed and tested in vitro a hydrogel scaffold with pre-determined functionalities. We have also demonstrated the feasibility of obtaining significant re-mineralization of incipient dental root lesions ex vivo in a relatively short time using the mineralization-directing peptides. The approaches developed through this research may offer clinically acceptable novel procedures to treat calcified tissue defects because the developed peptide is safe to use and promotes the mineralization in a short period of time offered by none of the existing treatment options.

Estimation of Nitrogen Pools in Irrigated Potato Production on Sandy Soil Using the Model SUBSTOR

PubMed Central

Prasad, Rishi; Hochmuth, George J.; Boote, Kenneth J.

2015-01-01

Recent increases in nitrate concentrations in the Suwannee River and associated springs in northern Florida have raised concerns over the contributions of non-point sources. The Middle Suwannee River Basin (MSRB) is of special concern because of prevalent karst topography, unconfined aquifers and sandy soils which increase vulnerability of the ground water contamination from agricultural operations- a billion dollar industry in this region. Potato (Solanum tuberosum L.) production poses a challenge in the area due to the shallow root system of potato plants, and low water and nutrient holding capacity of the sandy soils. A four-year monitoring study for potato production on sandy soil was conducted on a commercial farm located in the MSRB to identify major nitrogen (N) loss pathways and determine their contribution to the total environmental N load, using a partial N budget approach and the potato model SUBSTOR. Model simulated environmental N loading rates were found to lie within one standard deviation of the observed values and identified leaching loss of N as the major sink representing 25 to 38% (or 85 to 138 kg ha-1 N) of the total input N (310 to 349 kg ha-1 N). The crop residues left in the field after tuber harvest represented a significant amount of N (64 to 110 kg ha-1N) and posed potential for indirect leaching loss of N upon their mineralization and the absence of subsequent cover crops. Typically, two months of fallow period exits between harvest of tubers and planting of the fall row crop (silage corn). The fallow period is characterized by summer rains which pose a threat to N released from rapidly mineralizing potato vines. Strategies to reduce N loading into the groundwater from potato production must focus on development and adoption of best management practices aimed on reducing direct as well as indirect N leaching losses. PMID:25635904

Root production method system

Treesearch

Wayne Lovelace

2002-01-01

The RPM system (Root Production Method) is a multistep production system of container tree production that places primary emphasis on the root system because the root system ultimately determines the tree's survival and performance in its outplanted environment. This particular container production system has been developed to facilitate volume production, in a...

Evaluation of spatial filtering on the accuracy of wheat area estimate

NASA Technical Reports Server (NTRS)

Dejesusparada, N. (Principal Investigator); Moreira, M. A.; Chen, S. C.; Delima, A. M.

1982-01-01

A 3 x 3 pixel spatial filter for postclassification was used for wheat classification to evaluate the effects of this procedure on the accuracy of area estimation using LANDSAT digital data obtained from a single pass. Quantitative analyses were carried out in five test sites (approx 40 sq km each) and t tests showed that filtering with threshold values significantly decreased errors of commission and omission. In area estimation filtering improved the overestimate of 4.5% to 2.7% and the root-mean-square error decreased from 126.18 ha to 107.02 ha. Extrapolating the same procedure of automatic classification using spatial filtering for postclassification to the whole study area, the accuracy in area estimate was improved from the overestimate of 10.9% to 9.7%. It is concluded that when single pass LANDSAT data is used for crop identification and area estimation the postclassification procedure using a spatial filter provides a more accurate area estimate by reducing classification errors.

Agarose and Polyacrylamide Gel Electrophoresis Methods for Molecular Mass Analysis of 5–500 kDa Hyaluronan

PubMed Central

Bhilocha, Shardul; Amin, Ripal; Pandya, Monika; Yuan, Han; Tank, Mihir; LoBello, Jaclyn; Shytuhina, Anastasia; Wang, Wenlan; Wisniewski, Hans-Georg; de la Motte, Carol; Cowman, Mary K.

2011-01-01

Agarose and polyacrylamide gel electrophoresis systems for the molecular mass-dependent separation of hyaluronan (HA) in the size range of approximately 5–500 kDa have been investigated. For agarose-based systems, the suitability of different agarose types, agarose concentrations, and buffers systems were determined. Using chemoenzymatically synthesized HA standards of low polydispersity, the molecular mass range was determined for each gel composition, over which the relationship between HA mobility and logarithm of the molecular mass was linear. Excellent linear calibration was obtained for HA molecular mass as low as approximately 9 kDa in agarose gels. For higher resolution separation, and for extension to molecular masses as low as approximately 5 kDa, gradient polyacrylamide gels were superior. Densitometric scanning of stained gels allowed analysis of the range of molecular masses present in a sample, and calculation of weight-average and number-average values. The methods were validated for polydisperse HA samples with viscosity-average molecular masses of 112, 59, 37, and 22 kDa, at sample loads of 0.5 µg (for polyacrylamide) to 2.5 µg (for agarose). Use of the methods for electrophoretic mobility shift assays was demonstrated for binding of the HA-binding region of aggrecan (recombinant human aggrecan G1-IGD-G2 domains) to a 150 kDa HA standard. PMID:21684248

Effects of beer factory sludge on soil properties and growth of sugar beet (Beta vulgaris saccharifera L.).

PubMed

Kütük, Cihat; Cayci, Gökhan; Baran, Abdullah; Başkan, Oguz; Hartmann, Roger

2003-10-01

The possible use of beer factory sludge (BFS) for an agricultural purpose was investigated with sugar beet (Beta vulgaris saccharifera L.). BFS was air dried and sieved through a 4 mm mesh before application to a soil (Typic Xerofluvent). Afterwards, the BFS was mixed with soil at a rate 0, 10, 20, 40, 80 and 160 tonnes ha(-1). The mixtures were than put into pots and kept in the greenhouse for an incubation of five months. During the incubation, pH, the electrical conductivity, the organic matter content, NH4+-N and NO3--N content were regularly measured. At the end of the incubation period, sugar beet seeds were sown into the same pots. After a growing period of six-months the sugar beet plants were harvested, and yield and quality parameters were determined. BFS increased leaf and root yield. However, the effect of BFS on leaf growth was more pronounced than on root growth. The highest sugar content, refined sugar content and refined sugar yield were obtained with the application rate of 10 tonnes BFS per hectare. Ten tonnes of BSF per hectare was the most suitable on the basis of root quality parameters and root yield. However BFS should be applied to the soil six or seven months in advance due to the high level of nitrogen released through mineralization.

Patterns of nocturnal rehydration in root tissues of Vaccinium corymbosum L. under severe drought conditions

PubMed Central

Valenzuela-Estrada, Luis R.; Richards, James H.; Diaz, Andres; Eissensat, David M.

2009-01-01

Although roots in dry soil layers are commonly rehydrated by internal hydraulic redistribution during the nocturnal period, patterns of tissue rehydration are poorly understood. Rates of nocturnal rehydration were examined in roots of different orders in Vaccinium corymbosum L. ‘Bluecrop’ (Northern highbush blueberry) grown in a split-pot system with one set of roots in relatively moist soil and the other set of roots in dry soil. Vaccinium is noted for a highly branched and extremely fine root system. It is hypothesized that nocturnal root tissue rehydration would be slow, especially in the distal root orders because of their greater hydraulic constraints (smaller vessel diameters and fewer number of vessels). Vaccinium root hydraulic properties delayed internal water movement. Even when water was readily available to roots in the wet soil and transpiration was minimal, it took a whole night-time period of 12 h for the distal finest roots (1st to 4th order) under dry soil conditions to reach the same water potentials as fine roots in moist soil (1st to 4th order). Even though roots under dry soil equilibrated with roots in moist soil, the equilibrium point reached before sunrise was about –1.2 MPa, indicating that tissues were not fully rehydrated. Using a single-branch root model, it was estimated that individual roots exhibiting the lowest water potentials in dry soil were 1st order roots (distal finest roots of the root system). However, considered at the branch level, root orders with the highest hydraulic resistances corresponded to the lowest orders of the permanent root system (3rd-, 4th-, and 5th-order roots), thus indicating possible locations of hydraulic safety control in the root system of this species. PMID:19188275

Patterns of nocturnal rehydration in root tissues of Vaccinium corymbosum L. under severe drought conditions.

PubMed

Valenzuela-Estrada, Luis R; Richards, James H; Diaz, Andres; Eissensat, David M

2009-01-01

Although roots in dry soil layers are commonly rehydrated by internal hydraulic redistribution during the nocturnal period, patterns of tissue rehydration are poorly understood. Rates of nocturnal rehydration were examined in roots of different orders in Vaccinium corymbosum L. 'Bluecrop' (Northern highbush blueberry) grown in a split-pot system with one set of roots in relatively moist soil and the other set of roots in dry soil. Vaccinium is noted for a highly branched and extremely fine root system. It is hypothesized that nocturnal root tissue rehydration would be slow, especially in the distal root orders because of their greater hydraulic constraints (smaller vessel diameters and fewer number of vessels). Vaccinium root hydraulic properties delayed internal water movement. Even when water was readily available to roots in the wet soil and transpiration was minimal, it took a whole night-time period of 12 h for the distal finest roots (1st to 4th order) under dry soil conditions to reach the same water potentials as fine roots in moist soil (1st to 4th order). Even though roots under dry soil equilibrated with roots in moist soil, the equilibrium point reached before sunrise was about -1.2 MPa, indicating that tissues were not fully rehydrated. Using a single-branch root model, it was estimated that individual roots exhibiting the lowest water potentials in dry soil were 1st order roots (distal finest roots of the root system). However, considered at the branch level, root orders with the highest hydraulic resistances corresponded to the lowest orders of the permanent root system (3rd-, 4th-, and 5th-order roots), thus indicating possible locations of hydraulic safety control in the root system of this species.

Using thermodynamics to assess biotic and abiotic impediments to root water uptake

NASA Astrophysics Data System (ADS)

Bechmann, Marcel; Hildebrandt, Anke; Kleidon, Axel

2016-04-01

Root water uptake has been the subject of extensive research, dealing with understanding the processes limiting transpiration and understanding strategies of plants to avoid water stress. Many of those studies use models of water flow from the soil through the plant into the atmosphere to learn about biotic and abiotic factors affecting plant water relations. One important question in this context is to identify those processes that are most limiting to water transport, and specifically whether these processes lie within the plant or the soil? Here, we propose to use a thermodynamic formulation of root water uptake to answer this question. The method allows us to separate the energy exported at the root collar into a sum of energy fluxes related to all processes along the flow path, notably including the effect of increasing water retention in drier soils. Evaluation of the several contributions allows us to identify and rank the processes by how much these impede water flow from the soil to the atmosphere. The application of this approach to a complex 3-dimensional root water uptake model reveals insights on the role of root versus soil resistances to limit water flow. We investigate the efficiency of root water uptake in an ensemble of root systems with varying root hydraulic properties. While root morphology is kept the same, root radial and axial resistances are artificially varied. Starting with entirely young systems (uptake roots, high radial, low axial conductance) we increasingly add older roots (transport roots, high axial, low radial conductance) to improve transport within root systems. This yields a range of root hydraulic architectures, where the extremes are limited either by radial uptake capacity or low capacity to transport water along the root system. We model root water uptake in this range of root systems with a 3-dimensional root water uptake model in two different soils, applying constant flux boundary conditions in a dry down experiment and evaluate energy fluxes afterwards. The results show that a minimum of energy is exported in mixed root systems, but a wide range of root systems act near the optimum. A great loss of efficiency only occurs in the extreme cases (only young or only old roots). In all systems near the optimum root water uptake is impeded equally by abiotic and biotic factors in moist conditions, whereas abiotic factors become the limiting factor in dry conditions. The abiotic factors depend on the soil type and are either due to the water retention function or water flow towards individual roots. Small changes in the distribution of root resistance shift the impediments from radial to axial flow path within the root, but without much affecting overall energy export. This suggests that abiotic factors are a dominant control for efficient root water uptake, while morphology only has a comparatively smaller effect, as long as the root system contains a minimum mixture of uptake and transport roots.

Can diversity in root architecture explain plant water use efficiency? A modeling study

PubMed Central

Tron, Stefania; Bodner, Gernot; Laio, Francesco; Ridolfi, Luca; Leitner, Daniel

2015-01-01

Drought stress is a dominant constraint to crop production. Breeding crops with adapted root systems for effective uptake of water represents a novel strategy to increase crop drought resistance. Due to complex interaction between root traits and high diversity of hydrological conditions, modeling provides important information for trait based selection. In this work we use a root architecture model combined with a soil-hydrological model to analyze whether there is a root system ideotype of general adaptation to drought or water uptake efficiency of root systems is a function of specific hydrological conditions. This was done by modeling transpiration of 48 root architectures in 16 drought scenarios with distinct soil textures, rainfall distributions, and initial soil moisture availability. We find that the efficiency in water uptake of root architecture is strictly dependent on the hydrological scenario. Even dense and deep root systems are not superior in water uptake under all hydrological scenarios. Our results demonstrate that mere architectural description is insufficient to find root systems of optimum functionality. We find that in environments with sufficient rainfall before the growing season, root depth represents the key trait for the exploration of stored water, especially in fine soils. Root density, instead, especially near the soil surface, becomes the most relevant trait for exploiting soil moisture when plant water supply is mainly provided by rainfall events during the root system development. We therefore concluded that trait based root breeding has to consider root systems with specific adaptation to the hydrology of the target environment. PMID:26412932

Can diversity in root architecture explain plant water use efficiency? A modeling study.

PubMed

Tron, Stefania; Bodner, Gernot; Laio, Francesco; Ridolfi, Luca; Leitner, Daniel

2015-09-24

Drought stress is a dominant constraint to crop production. Breeding crops with adapted root systems for effective uptake of water represents a novel strategy to increase crop drought resistance. Due to complex interaction between root traits and high diversity of hydrological conditions, modeling provides important information for trait based selection. In this work we use a root architecture model combined with a soil-hydrological model to analyze whether there is a root system ideotype of general adaptation to drought or water uptake efficiency of root systems is a function of specific hydrological conditions. This was done by modeling transpiration of 48 root architectures in 16 drought scenarios with distinct soil textures, rainfall distributions, and initial soil moisture availability. We find that the efficiency in water uptake of root architecture is strictly dependent on the hydrological scenario. Even dense and deep root systems are not superior in water uptake under all hydrological scenarios. Our results demonstrate that mere architectural description is insufficient to find root systems of optimum functionality. We find that in environments with sufficient rainfall before the growing season, root depth represents the key trait for the exploration of stored water, especially in fine soils. Root density, instead, especially near the soil surface, becomes the most relevant trait for exploiting soil moisture when plant water supply is mainly provided by rainfall events during the root system development. We therefore concluded that trait based root breeding has to consider root systems with specific adaptation to the hydrology of the target environment.

Sorghum root-system classification in contrasting P environments reveals three main rooting types and root-architecture-related marker-trait associations.

PubMed

Parra-Londono, Sebastian; Kavka, Mareike; Samans, Birgit; Snowdon, Rod; Wieckhorst, Silke; Uptmoor, Ralf

2018-02-12

Roots facilitate acquisition of macro- and micronutrients, which are crucial for plant productivity and anchorage in the soil. Phosphorus (P) is rapidly immobilized in the soil and hardly available for plants. Adaptation to P scarcity relies on changes in root morphology towards rooting systems well suited for topsoil foraging. Root-system architecture (RSA) defines the spatial organization of the network comprising primary, lateral and stem-derived roots and is important for adaptation to stress conditions. RSA phenotyping is a challenging task and essential for understanding root development. In this study, 19 traits describing RSA were analysed in a diversity panel comprising 194 sorghum genotypes, fingerprinted with a 90-k single-nucleotide polymorphism (SNP) array and grown under low and high P availability. Multivariate analysis was conducted and revealed three different RSA types: (1) a small root system; (2) a compact and bushy rooting type; and (3) an exploratory root system, which might benefit plant growth and development if water, nitrogen (N) or P availability is limited. While several genotypes displayed similar rooting types in different environments, others responded to P scarcity positively by developing more exploratory root systems, or negatively with root growth suppression. Genome-wide association studies revealed significant quantitative trait loci (P < 2.9 × 10-6) on chromosomes SBI-02, SBI-03, SBI-05 and SBI-09. Co-localization of significant and suggestive (P < 5.7 × 10-5) associations for several traits indicated hotspots controlling root-system development on chromosomes SBI-02 and SBI-03. Sorghum genotypes with a compact, bushy and shallow root system provide potential adaptation to P scarcity in the field by allowing thorough topsoil foraging, while genotypes with an exploratory root system may be advantageous if N or water is the limiting factor, although such genotypes showed highest P uptake levels under the artificial conditions of the present study. © The Author(s) 2018. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Manganese-superoxide dismutase (MnSOD), a role player in seahorse (Hippocampus abdominalis) antioxidant defense system and adaptive immune system.

PubMed

Perera, N C N; Godahewa, G I; Lee, Seongdo; Kim, Myoung-Jin; Hwang, Jee Youn; Kwon, Mun Gyeong; Hwang, Seong Don; Lee, Jehee

2017-09-01

Manganese superoxide dismutase (MnSOD) is a metaloenzyme that catalyzes dismutation of the hazardous superoxide radicals into less hazardous H 2 O 2 and H 2 O. Here, we identified a homolog of MnSOD from big belly seahorse (Hippocampus abdominalis; HaMnSOD) and characterized its structural and functional features. HaMnSOD transcript possessed an open reading frame (ORF) of 672 bp which codes for a peptide of 223 amino acids. Pairwise alignment showed that HaMnSOD shared highest identity with rock bream MnSOD. Results of the phylogenetic analysis of HaMnSOD revealed a close proximity with rock bream MnSOD which was consistent with the result of homology alignment. The intense expression of HaMnSOD was observed in the ovary, followed by the heart and the brain. Further, immune related responses of HaMnSOD towards pathogenic stimulation were observed through bacterial and viral challenges. Highest HaMnSOD expression in response to stimulants Edwardsiella tarda, Streptococcus iniae, lipopolysaccharide (LPS), and polyinosinic-polycytidylic acid (Poly I:C) was observed in the late stage in the blood tissue. Xanthine/xanthine oxidase assay (XOD assay) indicated the ROS-scavenging ability of purified recombinant HaMnSOD (rHaMnSOD). The optimum conditions for the SOD activity of rHaMnSOD were pH 9 and the 25 °C. Collectively, the results obtained through the expressional analysis profiles and the functional assays provide insights into potential immune related and antioxidant roles of HaMnSOD in the big belly seahorse. Copyright © 2017 Elsevier Ltd. All rights reserved.

Single Plant Root System Modeling under Soil Moisture Variation

NASA Astrophysics Data System (ADS)

Yabusaki, S.; Fang, Y.; Chen, X.; Scheibe, T. D.

2016-12-01

A prognostic Virtual Plant-Atmosphere-Soil System (vPASS) model is being developed that integrates comprehensively detailed mechanistic single plant modeling with microbial, atmospheric, and soil system processes in its immediate environment. Three broad areas of process module development are targeted: Incorporating models for root growth and function, rhizosphere interactions with bacteria and other organisms, litter decomposition and soil respiration into established porous media flow and reactive transport models Incorporating root/shoot transport, growth, photosynthesis and carbon allocation process models into an integrated plant physiology model Incorporating transpiration, Volatile Organic Compounds (VOC) emission, particulate deposition and local atmospheric processes into a coupled plant/atmosphere model. The integrated plant ecosystem simulation capability is being developed as open source process modules and associated interfaces under a modeling framework. The initial focus addresses the coupling of root growth, vascular transport system, and soil under drought scenarios. Two types of root water uptake modeling approaches are tested: continuous root distribution and constitutive root system architecture. The continuous root distribution models are based on spatially averaged root development process parameters, which are relatively straightforward to accommodate in the continuum soil flow and reactive transport module. Conversely, the constitutive root system architecture models use root growth rates, root growth direction, and root branching to evolve explicit root geometries. The branching topologies require more complex data structures and additional input parameters. Preliminary results are presented for root model development and the vascular response to temporal and spatial variations in soil conditions.

Evaluation of a commercial Bacillus thuringiensis var. israelensis formulation for the control of chironomid midge larvae (Diptera: Chironomidae) in establishing rice crops in south-eastern Australia.

PubMed

Stevens, Mark M; Hughes, Peter A; Mo, Jianhua

2013-01-01

A commercial formulation of Bacillus thuringiensis var. israelensis (B.t.i.) was evaluated for its potential to control chironomid midge larvae in newly sown rice crops in south-eastern Australia. Two replicated small-plot field trials were conducted using product application rates of 0.5-6 kg/ha. In trial 1 application rates between 2 and 6 kg product/ha all significantly (P<0.05) reduced populations of target Chironominae/Orthocladiinae by between 71% and 93% over the 19 day post-treatment monitoring period. Trial 2 was conducted using lower application rates (0.5-2 kg product/ha) and only the 2 kg product/ha rate significantly (P<0.05) reduced numbers of the target group (81% reduction) despite lower application rates resulting in target group suppression of 38-62%. Identification of larvae to species level from selected samples indicated that populations of Chironomus tepperi, the principal pest species that attacks the roots of rice seedlings, were reduced at all application rates; elimination of C. tepperi was achieved in trial 1 at an application rate of 2 kg/ha. Consistent with other studies, non-target Tanypodinae were not adversely affected by B.t.i., and in some treatments populations of Tanypodinae exceeded control levels by up to 73%. In the first trial, which was conducted under relatively high pest pressure, plant establishment was significantly (P<0.05) increased (120-157%) by Vectobac® WDG application rates of 2-6 kg/ha. No significant increase in plant establishment relative to the controls was identified in the second trial, when pest pressure was substantially lower and minimal damage occurred in the control bays. Overall, our results demonstrate that B.t.i. may be an economically viable alternative to broad-spectrum synthetic pesticides for the control of phytophagous midge larvae in establishing rice crops where members of the Chironominae, the group most susceptible to B.t.i., are the principal species of concern. The high specificity of B.t.i. for nematoceran Diptera should lead to reduced impacts on non-target organisms. Copyright © 2012 Elsevier Inc. All rights reserved.

Changes in Carbon Storage and Net Carbon Exchange After a Shelterwood Harvest at Howland Forest, Maine

NASA Astrophysics Data System (ADS)

Scott, N. A.; Rodrigues, C. A.; Hughes, H.; Lee, J. T.; Davidson, E. A.; Dail, D. B.; Goltz, S. M.; Malerba, P.; Hollinger, D. Y.

2003-12-01

While many forests are actively sequestering carbon, little research has examined the direct effects of forest management practices on carbon sequestration. This is a critical issue in North America, where a large proportion of forests are managed. At the Howland Forest in Maine, we are using eddy covariance, biometric techniques and modeling to evaluate changes in carbon storage following a shelterwood cut that removed just under 30% of aboveground biomass. This management regime is becoming increasingly common throughout the region. Prior to harvest, the stand contained about 76 Mg C ha-1 (30 m2ha-1 basal area) in above- and below-ground live biomass. Harvesting removed about 15 Mg C ha-1 (SEM=2.1), and created about 5.3 Mg C ha-1 (SEM=1.1) of aboveground and 5.2 Mg C ha-1 (SEM=0.7) of root/stump detritus. Leaf-area index and litterfall declined by about 40% with harvest. Approximately half of the harvested wood was used for paper products (half-life of 3.5 years) and half for longer-lived wood products (half-life of 45 years). In a nearby, unharvested stand, eddy covariance measurements indicated that net ecosystem exchange (NEE) averages about 1.8 Mg C ha-1 y-1. A comparison of NEE at unharvested and harvested stands, both pre- and post-harvest, indicated that NEE declined following the harvest by about 18%, which is less than expected based on basal area and LAI changes. Both daily uptake and nocturnal respiration declined after harvest. Soil respiration declined slightly with harvest, suggesting no major soil C loss after harvest; harvesting had little effect on soil moisture and temperature. When decay of paper and wood products is included in a preliminary carbon budget, we predict that the forest will be a net C source to the atmosphere for at least 5 years, assuming pre-harvest growth rates of trees. How quickly the carbon balance becomes positive will depend largely on whether post-harvest tree growth rates increase.

Hyaluronic Acid and Its Derivatives in Coating and Delivery Systems: Applications in Tissue Engineering, Regenerative Medicine and Immunomodulation.

PubMed

Knopf-Marques, Helena; Pravda, Martin; Wolfova, Lucie; Velebny, Vladimir; Schaaf, Pierre; Vrana, Nihal Engin; Lavalle, Philippe

2016-11-01

As an Extracellular Matrix (ECM) component, Hyaluronic acid (HA) plays a multi-faceted role in cell migration, proliferation and differentiation at micro level and system level events such as tissue water homeostasis. Among its biological functions, it is known to interact with cytokines and contribute to their retention in ECM microenvironment. In addition to its biological functions, it has advantageous physical properties which result in the industrial endeavors in the synthesis and extraction of HA for variety of applications ranging from medical to cosmetic. Recently, HA and its derivatives have been the focus of active research for applications in biomedical device coatings, drug delivery systems and in the form of scaffolds or cell-laden hydrogels for tissue engineering. A specific reason for the increase in use of HA based structures is their immunomodulatory and regeneration inducing capacities. In this context, this article reviews recent literature on modulation of the implantable biomaterial microenvironment by systems based on HA and its derivatives, particularly hydrogels and microscale coatings that are able to deliver cytokines in order to reduce the adverse immune reactions and promote tissue healing. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Pursuing Intracellular Pathogens with Hyaluronan. From a 'Pro-Infection' Polymer to a Biomaterial for 'Trojan Horse' Systems.

PubMed

Montanari, Elita; Di Meo, Chiara; Oates, Angela; Coviello, Tommasina; Matricardi, Pietro

2018-04-18

Hyaluronan (HA) is among the most important bioactive polymers in mammals, playing a key role in a number of biological functions. In the last decades, it has been increasingly studied as a biomaterial for drug delivery systems, thanks to its physico-chemical features and ability to target and enter certain cells. The most important receptor of HA is ‘Cluster of Differentiation 44’ (CD44), a cell surface glycoprotein over-expressed by a number of cancers and heavily involved in HA endocytosis. Moreover, CD44 is highly expressed by keratinocytes, activated macrophages and fibroblasts, all of which can act as ‘reservoirs’ for intracellular pathogens. Interestingly, both CD44 and HA appear to play a key role for the invasion and persistence of such microorganisms within the cells. As such, HA is increasingly recognised as a potential target for nano-carriers development, to pursuit and target intracellular pathogens, acting as a ‘Trojan Horse’. This review describes the biological relationship between HA, CD44 and the entry and survival of a number of pathogens within the cells and the subsequent development of HA-based nano-carriers for enhancing the intracellular activity of antimicrobials.

Topical treatments of Saussurea costus root and Thuja orientalis L. synergistically alleviate atopic dermatitis-like skin lesions by inhibiting protease-activated receptor-2 and NF-κB signaling in HaCaT cells and Nc/Nga mice.

PubMed

Yang, Hye Jeong; Kim, Min Jung; Kang, Suna; Moon, Na Rang; Kim, Da Sol; Lee, Na Ra; Kim, Kang Sung; Park, Sunmin

2017-03-06

The root of Saussurea costus (Aucklandia lappa Decne, Aucklandiae Radix, SC) and Thuja orientalis L. (TOL) have been traditionally used as anti-inflammatory agents in Korea. However, they have not been studied for the efficacy of atopic dermatitis (AD) treatment, a chronic inflammatory skin disease. We investigated the efficacy of topical applications with 1,3-butyleneglycol extracts of SC and TOL to alleviate the symptoms of AD. HaCaT cells and the dorsal skin of Nc/Nga mice had a local exposure of house mite extracts and 2,4-dinitrochlorobenzene (DNCB), respectively. After lesions developed, we topically applied 1,3-butylen glycol (vehicle; control), SC (30%), TOL (30%), or SC (15%)+TOL (15%) to the skin lesions for 5 weeks. The normal-control was not exposed to DNCB. The skin thickness, mast cell infiltration, serum immunoglobulin E (IgE) and IgG1 and gene expressions of interleukin (IL)-4, IL-13, and IFN-γ in the dorsal skin and HaCaT cells were measured. Chlorogenic acid (129.6±10.2μg/g) for SC and catechin and apigenin (93.4±13.2 and 16.9±1.3μg/g, respectively) for TOL were used as indicator compounds for the strength of the extracts. SC+TOL decreased the expression of protease-activated receptor-2 and ICAM-1 and the release of TNF-α and IL-6 in HaCaT cells activated by 3μg/mL house mite extracts in comparison to either of SC or TOL alone. In Nc/Nga mice challenged with DNCB, SC+TOL synergistically attenuated clinical symptoms of AD such as erythema, hemorrhage, edema, excoriation and dryness in the dorsal skin better than either SC or TOL alone. Histological analysis of the dorsal skin also showed that SC+TOL treatment significantly and additively decreased the inflammatory cellular infiltrate, including mast cells and eosinophils in comparison to either of SC or TOL. SC+TOL also decreased serum IgE and IgG1 levels and the expression of IFN-γ, IL-4, and IL-13 mRNA in dorsal skin in DNCB-treated Nc/Nga mice. SC+TOL relieved the symptoms of AD by reducing pro-inflammatory activity and over-activated immune responses. These data suggest that SC+TOL may be an effective alternative intervention for the management of AD. Copyright © 2017 Elsevier Ireland Ltd. All rights reserved.

Acanthocephalans from fishes and amphibians in Vietnam, with descriptions of five new species.

PubMed

Amin, Omar Mohamed; Heckmann, Richard Anderson; Van Ha, Nguyen

2014-01-01

Eight species of acanthocephalans are reported, and five are new. Specimens of Neoechinorhynchus (Hebesoma) manubrianus Amin, Ha & Ha, 2011 were similar to the original description. Neoechinorhynchus (Hebesoma) spiramuscularis n. sp. (Neoechinorhynchidae), from Xenocypris davidi, has a unique proboscis receptacle wrapped in a spiral muscular layer, and an undulating flask-shaped lemnisci, as well as double para-receptacle structures. Heterosentis mongcai n. sp. (Arhythmacanthidae), from Acreichthys sp., has a small fusiform trunk with an unarmed cone and anterior trunk spines, and a proboscis with two circles of rooted apical hooks and 3-4 circles of rooted posterior spines as well as a para-receptacle-like structure at the posterior end. The poorly known Filisoma indicum Van Cleave, 1928 is fully described and illustrated for the first time. Acanthocephalus parallelcementglandatus n. sp. (Echinorhynchidae), from Clarias batrachus, is distinguished from other species of Acanthocephalus by its small fusiform trunk and parallel tubular cement glands. Pseudoacanthocephalus coniformis n. sp. (Echinorhynchidae), from Hylarana sp., is distinguished from other species by having an anterior trunk collar and staggered prominent filiform cement glands, among other features. Cathayacanthus spinitruncatus n. sp. (Rhadinorhynchidae), from Leiognathus equulus, is distinguished from the only two known species of the genus by having a very long and slender proboscis with more than 50 hooks per row and a totally spined trunk. The generic diagnosis of Cathayacanthus Golvan, 1969 is emended. Rhadinorhynchus johnstoni Golvan, 1969 (Rhadinorhynchidae) perfectly fits the only complete description of that species from the Fiji Islands. © O.M. Amin et al., published by EDP Sciences, 2014.

Root evolution at the base of the lycophyte clade: insights from an Early Devonian lycophyte.

PubMed

Matsunaga, Kelly K S; Tomescu, Alexandru M F

2016-04-01

The evolution of complex rooting systems during the Devonian had significant impacts on global terrestrial ecosystems and the evolution of plant body plans. However, detailed understanding of the pathways of root evolution and the architecture of early rooting systems is currently lacking. We describe the architecture and resolve the structural homology of the rooting system of an Early Devonian basal lycophyte. Insights gained from these fossils are used to address lycophyte root evolution and homology. Plant fossils are preserved as carbonaceous compressions at Cottonwood Canyon (Wyoming), in the Lochkovian-Pragian (∼411 Ma; Early Devonian) Beartooth Butte Formation. We analysed 177 rock specimens and documented morphology, cuticular anatomy and structural relationships, as well as stratigraphic position and taphonomic conditions. The rooting system of the Cottonwood Canyon lycophyte is composed of modified stems that bear fine, dichotomously branching lateral roots. These modified stems, referred to as root-bearing axes, are produced at branching points of the above-ground shoot system. Root-bearing axes preserved in growth position exhibit evidence of positive gravitropism, whereas the lateral roots extend horizontally. Consistent recurrence of these features in successive populations of the plant preserved in situ demonstrates that they represent constitutive structural traits and not opportunistic responses of a flexible developmental programme. This is the oldest direct evidence for a rooting system preserved in growth position. These rooting systems, which can be traced to a parent plant, include some of the earliest roots known to date and demonstrate that substantial plant-substrate interactions were under way by Early Devonian time. The morphological relationships between stems, root-bearing axes and roots corroborate evidence that positive gravitropism and root identity were evolutionarily uncoupled in lycophytes, and challenge the hypothesis that roots evolved from branches of the above-ground axial system, suggesting instead that lycophyte roots arose as a novel organ. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Environmental Control of Root System Biology.

PubMed

Rellán-Álvarez, Rubén; Lobet, Guillaume; Dinneny, José R

2016-04-29

The plant root system traverses one of the most complex environments on earth. Understanding how roots support plant life on land requires knowing how soil properties affect the availability of nutrients and water and how roots manipulate the soil environment to optimize acquisition of these resources. Imaging of roots in soil allows the integrated analysis and modeling of environmental interactions occurring at micro- to macroscales. Advances in phenotyping of root systems is driving innovation in cross-platform-compatible methods for data analysis. Root systems acclimate to the environment through architectural changes that act at the root-type level as well as through tissue-specific changes that affect the metabolic needs of the root and the efficiency of nutrient uptake. A molecular understanding of the signaling mechanisms that guide local and systemic signaling is providing insight into the regulatory logic of environmental responses and has identified points where crosstalk between pathways occurs.

Modelling Root Systems Using Oriented Density Distributions

NASA Astrophysics Data System (ADS)

Dupuy, Lionel X.

2011-09-01

Root architectural models are essential tools to understand how plants access and utilize soil resources during their development. However, root architectural models use complex geometrical descriptions of the root system and this has limitations to model interactions with the soil. This paper presents the development of continuous models based on the concept of oriented density distribution function. The growth of the root system is built as a hierarchical system of partial differential equations (PDEs) that incorporate single root growth parameters such as elongation rate, gravitropism and branching rate which appear explicitly as coefficients of the PDE. Acquisition and transport of nutrients are then modelled by extending Darcy's law to oriented density distribution functions. This framework was applied to build a model of the growth and water uptake of barley root system. This study shows that simplified and computer effective continuous models of the root system development can be constructed. Such models will allow application of root growth models at field scale.

An image processing and analysis tool for identifying and analysing complex plant root systems in 3D soil using non-destructive analysis: Root1.

PubMed

Flavel, Richard J; Guppy, Chris N; Rabbi, Sheikh M R; Young, Iain M

2017-01-01

The objective of this study was to develop a flexible and free image processing and analysis solution, based on the Public Domain ImageJ platform, for the segmentation and analysis of complex biological plant root systems in soil from x-ray tomography 3D images. Contrasting root architectures from wheat, barley and chickpea root systems were grown in soil and scanned using a high resolution micro-tomography system. A macro (Root1) was developed that reliably identified with good to high accuracy complex root systems (10% overestimation for chickpea, 1% underestimation for wheat, 8% underestimation for barley) and provided analysis of root length and angle. In-built flexibility allowed the user interaction to (a) amend any aspect of the macro to account for specific user preferences, and (b) take account of computational limitations of the platform. The platform is free, flexible and accurate in analysing root system metrics.

Hyaluronic acid-modified zirconium phosphate nanoparticles for potential lung cancer therapy.

PubMed

Li, Ranwei; Liu, Tiecheng; Wang, Ke

2017-02-01

Novel tumor-targeting zirconium phosphate (ZP) nanoparticles modified with hyaluronic acid (HA) were developed (HA-ZP), with the aim of combining the drug-loading property of ZP and the tumor-targeting ability of HA to construct a tumor-targeting paclitaxel (PTX) delivery system for potential lung cancer therapy. The experimental results indicated that PTX loading into the HA-ZP nanoparticles was as high as 20.36%±4.37%, which is favorable for cancer therapy. PTX-loaded HA-ZP nanoparticles increased the accumulation of PTX in A549 lung cancer cells via HA-mediated endocytosis and exhibited superior anticancer activity in vitro. In vivo anticancer efficacy assay revealed that HA-ZP nanoparticles possessed preferable anticancer abilities, which exhibited minimized toxic side effects of PTX and strong tumor-suppression potential in clinical application.

Natural genetic variation of root system architecture from Arabidopsis to Brachypodium: towards adaptive value.

PubMed

Pacheco-Villalobos, David; Hardtke, Christian S

2012-06-05

Root system architecture is a trait that displays considerable plasticity because of its sensitivity to environmental stimuli. Nevertheless, to a significant degree it is genetically constrained as suggested by surveys of its natural genetic variation. A few regulators of root system architecture have been isolated as quantitative trait loci through the natural variation approach in the dicotyledon model, Arabidopsis. This provides proof of principle that allelic variation for root system architecture traits exists, is genetically tractable, and might be exploited for crop breeding. Beyond Arabidopsis, Brachypodium could serve as both a credible and experimentally accessible model for root system architecture variation in monocotyledons, as suggested by first glimpses of the different root morphologies of Brachypodium accessions. Whether a direct knowledge transfer gained from molecular model system studies will work in practice remains unclear however, because of a lack of comprehensive understanding of root system physiology in the native context. For instance, apart from a few notable exceptions, the adaptive value of genetic variation in root system modulators is unknown. Future studies should thus aim at comprehensive characterization of the role of genetic players in root system architecture variation by taking into account the native environmental conditions, in particular soil characteristics.

Increasing Soil Calcium Availability Alters Forest Soil Carbon Stocks

NASA Astrophysics Data System (ADS)

Melvin, A.; Goodale, C. L.

2011-12-01

Acid deposition in the Northeastern U.S. has been linked to a loss of soil base cations, especially calcium (Ca). While much research has addressed the effects of Ca depletion on soil and stream acidification, few studies have investigated its effects on ecosystem carbon (C) balance. We studied the long-term effects of increased Ca availability on C cycling in a northern hardwood forest in the Adirondack Park, NY. In 1989, calcium carbonate (lime) was added to ~ 100 ha of the Woods Lake Watershed to ameliorate the effects of soil Ca depletion. An additional 100 ha were maintained as controls. We hypothesized that the lime addition would improve forest health and that this improvement would be evident in increased tree biomass, leaf litter, and fine root production. Within the forest floor, we anticipated that the increased pH associated with liming would stimulate microbial activity resulting in increased decomposition and basal soil respiration, and reduced C stocks. Additionally, we hypothesized that increased Ca availability could enhance Ca-OM complexation in the upper mineral soils, leading to increased C stocks in these horizons. Eighteen years after liming, soil pH and exchangeable Ca pools remained elevated in the forest floor and upper mineral soil of the limed plots. Forest floor C stocks were significantly larger in limed plots (68 vs. 31 t C ha-1), and were driven primarily by greater C accumulation in the forest floor Oa horizon. Mineral soil C stocks did not differ between limed and control soils. Liming did not affect tree growth, however a net decline in biomass was observed across the entire watershed. There was a trend for larger fine root and foliar litter inputs in limed plots relative to controls, but the observed forest floor accumulation appears to be driven primarily by a suppression of decomposition. Liming reduced basal soil respiration rates by 17 and 43 % in the Oe and Oa horizons, respectively. This research suggests that Ca may stabilize soil organic matter and that long-term Ca depletion caused by acid deposition could have large, unexpected effects on ecosystem C dynamics.

Getting to the roots of it: Genetic and hormonal control of root architecture

PubMed Central

Jung, Janelle K. H.; McCouch, Susan

2013-01-01

Root system architecture (RSA) – the spatial configuration of a root system – is an important developmental and agronomic trait, with implications for overall plant architecture, growth rate and yield, abiotic stress resistance, nutrient uptake, and developmental plasticity in response to environmental changes. Root architecture is modulated by intrinsic, hormone-mediated pathways, intersecting with pathways that perceive and respond to external, environmental signals. The recent development of several non-invasive 2D and 3D root imaging systems has enhanced our ability to accurately observe and quantify architectural traits on complex whole-root systems. Coupled with the powerful marker-based genotyping and sequencing platforms currently available, these root phenotyping technologies lend themselves to large-scale genome-wide association studies, and can speed the identification and characterization of the genes and pathways involved in root system development. This capability provides the foundation for examining the contribution of root architectural traits to the performance of crop varieties in diverse environments. This review focuses on our current understanding of the genes and pathways involved in determining RSA in response to both intrinsic and extrinsic (environmental) response pathways, and provides a brief overview of the latest root system phenotyping technologies and their potential impact on elucidating the genetic control of root development in plants. PMID:23785372

Kinetics and equilibrium studies for the removal of heavy metals in both single and binary systems using hydroxyapatite

NASA Astrophysics Data System (ADS)

Ramesh, S. T.; Rameshbabu, N.; Gandhimathi, R.; Nidheesh, P. V.; Srikanth Kumar, M.

2012-09-01

Removal of heavy metals is very important with respect to environmental considerations. This study investigated the sorption of copper (Cu) and zinc (Zn) in single and binary aqueous systems onto laboratory prepared hydroxyapatite (HA) surfaces. Batch experiments were carried out using synthetic HA at 30 °C. Parameters that influence the adsorption such as contact time, adsorbent dosage and pH of solution were investigated. The maximum adsorption was found at contact time of 12 and 9 h, HA dosage of 0.4 and 0.7 g/l and pH of 6 and 8 for Cu and Zn, respectively, in single system. Adsorption kinetics data were analyzed using the pseudofirst-, pseudosecond-order and intraparticle diffusion models. The results indicated that the adsorption kinetic data were best described by pseudosecond-order model. Langmuir and Freundlich isotherm models were applied to analyze adsorption data, and Langmuir isotherm was found to be applicable to this adsorption system, in terms of relatively high regression values. The removal capacity of HA was found to be 125 mg of Cu/g, 30.3 mg of Zn/g in single system and 50 mg of Cu/g, 15.16 mg of Zn/g in binary system. The results indicated that the HA used in this work proved to be effective material for removing Cu and Zn from aqueous solutions.

CFIRP: What we learned in the first ten years

USGS Publications Warehouse

Chambers, C.L.; McComb, W.C.; Tappeiner, J. C.; Kellogg, L.D.; Johnson, R.L.; Spycher, G.

1999-01-01

In response to public dissatisfaction with forest management methods, we initiated the College of Forestry Integrated Research Project (CFIRP) to test alternative silvicultural systems in Douglas-fir (Pseudotsuga menziesii stands in western Oregon. We compared costs and biological and human responses among a control and three replicated silvicultural alternatives to clearcutting that retained structural features found in old Douglas-fir forests. Treatments were applied within 8- to 15-ha stands and attempted to mimic crown fires (modified clearcut), windthrow (green tree retention), and small-scale impacts such as root rot diseases (small patch group selection). We also compared costs in three unreplicated treatments (large patch group selection, wedge cut, and strip cut). Each treatment included differences in the pattern of retained dead trees (snags), as either scattered individuals or as clumps. Good communication among researchers and managers, a long-term commitment to the project, and careful documentation of research sites and data are important to the success of long-term silvicultural research projects. To date, over 30 publications have resulted from the project.

Fabrication of Novel Hydrogel with Berberine-Enriched Carboxymethylcellulose and Hyaluronic Acid as an Anti-Inflammatory Barrier Membrane

PubMed Central

Huang, Yu-Chih; Huang, Kuen-Yu; Yang, Bing-Yuan

2016-01-01

An antiadhesion barrier membrane is an important biomaterial for protecting tissue from postsurgical complications. However, there is room to improve these membranes. Recently, carboxymethylcellulose (CMC) incorporated with hyaluronic acid (HA) as an antiadhesion barrier membrane and drug delivery system has been reported to provide excellent tissue regeneration and biocompatibility. The aim of this study was to fabricate a novel hydrogel membrane composed of berberine-enriched CMC prepared from bark of the P. amurense tree and HA (PE-CMC/HA). In vitro anti-inflammatory properties were evaluated to determine possible clinical applications. The PE-CMC/HA membranes were fabricated by mixing PE-CMC and HA as a base with the addition of polyvinyl alcohol to form a film. Tensile strength and ultramorphology of the membrane were evaluated using a universal testing machine and scanning electron microscope, respectively. Berberine content of the membrane was confirmed using a UV-Vis spectrophotometer at a wavelength of 260 nm. Anti-inflammatory property of the membrane was measured using a Griess reaction assay. Our results showed that fabricated PE-CMC/HA releases berberine at a concentration of 660 μg/ml while optimal plasticity was obtained at a 30 : 70 PE-CMC/HA ratio. The berberine-enriched PE-CMC/HA had an inhibited 60% of inflammation stimulated by LPS. These results suggest that the PE-CMC/HA membrane fabricated in this study is a useful anti-inflammatory berberine release system. PMID:28119926

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.

PubMed

Uga, Yusaku; Sugimoto, Kazuhiko; Ogawa, Satoshi; Rane, Jagadish; Ishitani, Manabu; Hara, Naho; Kitomi, Yuka; Inukai, Yoshiaki; Ono, Kazuko; Kanno, Noriko; Inoue, Haruhiko; Takehisa, Hinako; Motoyama, Ritsuko; Nagamura, Yoshiaki; Wu, Jianzhong; Matsumoto, Takashi; Takai, Toshiyuki; Okuno, Kazutoshi; Yano, Masahiro

2013-09-01

The genetic improvement of drought resistance is essential for stable and adequate crop production in drought-prone areas. Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle. DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity. Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction. Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar. Our experiments suggest that control of root system architecture will contribute to drought avoidance in crops.

Responses of soybean to ammonium and nitrate supplied in combination to the whole root system or separately in a split-root system

NASA Technical Reports Server (NTRS)

Chaillou, S.; Rideout, J. W.; Raper, C. D. Jr; Raper CD, J. r. (Principal Investigator)

1994-01-01

To address the questions of whether allocation of carbohydrates to roots is influenced by ionic form of nitrogen absorbed and whether allocation of carbohydrates to roots in turn influences proportionality between NH4+ and NO3- uptake from mixed sources, NH4+ and NO3- were supplied separately to halves of a split-root hydroponic system and were supplied in combination to a whole-root system. Dry matter accumulation in the split-root system was 18% less in the NH4(+)-fed axis than in the NO3(-)-fed axis. This, however, does not indicate that partitioning of carbohydrate between the two axes was different. Most of the reduction in dry matter accumulation in the NH4(+)-fed axis can be accounted for by the retransport of CH2O equivalents from the root back to the shoot with amino acids produced by NH4+ assimilation. Uptake of NH4+ or NO3- by the respective halves of the split-root system was proportional to the estimated allocation of carbohydrate to that half. When NH4+ and NO3- were supplied to separate halves of the split-root system, the cumulative NH4+ to NO3- uptake ratio was 0.81. When supplied in combination to the whole-root system, the cumulative NH4+ to NO3- uptake ratio was 1.67. Thus, while the shoot may affect total nitrogen uptake through the export of carbohydrates to roots, the shoot (common for halves of the split-root system) apparently does not exert a direct effect on proportionality of NH4+ and NO3- uptake by roots. For whole roots supplied with both NH4+ and NO3-, the restriction in uptake of NO3- may involve a stimulation of NO3- efflux rather than an inhibition of NO3- influx. While only the net uptake of NH4+ and NO3- was measured by ion chromatography, monitoring at approximately hourly intervals during the first 3 days of treatment revealed irregularly occurring intervals of both depletion (net influx) and enrichment (net efflux) in solutions. In the case of NH4+, numbers of net efflux events were similar (21 to 24 out of 65 sequential sampling intervals) whether NH4+ was supplied with NO3- to whole-root systems or separately to an axis of the split-root system. In the case of NO3-, however, the number of net efflux events increased from 8 when NO3- was supplied to a separate axis of the split-root system to between 19 and 24 when NO3- was supplied with NH4+ to whole-root systems.

A statistical approach to root system classification

PubMed Central

Bodner, Gernot; Leitner, Daniel; Nakhforoosh, Alireza; Sobotik, Monika; Moder, Karl; Kaul, Hans-Peter

2013-01-01

Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for “plant functional type” identification in ecology can be applied to the classification of root systems. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. The study demonstrates that principal component based rooting types provide efficient and meaningful multi-trait classifiers. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems) is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Rooting types emerging from measured data, mainly distinguished by diameter/weight and density dominated types. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement techniques are essential. PMID:23914200

A statistical approach to root system classification.

PubMed

Bodner, Gernot; Leitner, Daniel; Nakhforoosh, Alireza; Sobotik, Monika; Moder, Karl; Kaul, Hans-Peter

2013-01-01

Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for "plant functional type" identification in ecology can be applied to the classification of root systems. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. The study demonstrates that principal component based rooting types provide efficient and meaningful multi-trait classifiers. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems) is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Rooting types emerging from measured data, mainly distinguished by diameter/weight and density dominated types. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement techniques are essential.

The efficiency of different irrigation solutions and techniques for the removal of triple antibiotic paste from simulated immature root canals.

PubMed

Ustun, Y; Düzgün, S; Aslan, T; Aktı, A

2018-03-01

The purpose of this study was to evaluate the efficiencies of different irrigation protocols in the removal of triple antibiotic paste (TAP) from root canals. A total of 127 extracted human maxillary incisor teeth were prepared. Then, root-end resection of 3 mm was accomplished to simulate immature apex model. The root canals were filled with TAP, after 21 days, randomly divided into nine groups according to irrigation systems and solutions (n = 13). Conventional irrigation (CI) groups - Group 1: Root canal irrigation was performed with CI by Peracetic acid (PAA) solution, Group 2: Root canal irrigation was performed with CI by etidronic acid 1-hydroxyethylidene-1, 1-bisphosphonate (HEBP) + sodium hypochlorite (NaOCl) solution, Group 3: Root canal irrigation was performed with CI by ethylenediaminetetraacetic acid (EDTA)/NaOCl solutions. Vibringe system groups - Group 4: Root canal irrigation was performed with Vibringe system by PAA solution, Group 5: Root canal irrigation was performed with Vibringe system by HEBP + NaOCl solution, Group 6: Root canal irrigation was performed with Vibringe system by EDTA/NaOCl solution. EndoVac system groups - Group 7: Root canal irrigation was performed with EndoVac system by PAA solution, Group 8: Root canal irrigation was performed with EndoVac system by HEBP + NaOCl solution, Group 9: Root canal irrigation was performed with EndoVac system by EDTA/NaOCl solution. Control Group: (n = 0). Samples were sectioned vertically, and the amount of remaining medicament was scored for each root half and data were statistically analyzed. Among the irrigation systems, CI groups showed the highest scores at both apical and coronal parts (P < 0.05). In comparisons among the solutions, at the apical part, PAA groups showed the highest scores (P < 0.05). At the coronal part, EDTA + NaOCl groups showed the lowest score values (P < 0.05). The use of irrigation systems improved the removal of TAP from the simulated immature root canals. Also, as an irrigation solution EDTA gives more promising results than PAA and HEBP solutions.

Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster.

PubMed

Danjon, Frédéric; Caplan, Joshua S; Fortin, Mathieu; Meredieu, Céline

2013-01-01

Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account for the fact that root systems are comprised of multiple types of roots. We assessed whether the relationship between CSD and Vd varies as a function of root type. Additionally, we sought to identify a more accurate and time-efficient method for estimating missing root volume than is currently available. We used a database that described the 3D root architecture of Pinus pinaster root systems (5, 12, or 19 years) from a stand in southwest France. We determined the relationship between CSD and Vd for 10,000 root segments from intact root branches. Models were specified that did and did not account for root type. The relationships were then applied to the diameters of 11,000 broken root ends to estimate the volume of missing roots. CSD was nearly linearly related to the square root of Vd, but the slope of the curve varied greatly as a function of root type. Sinkers and deep roots tapered rapidly, as they were limited by available soil depth. Distal shallow roots tapered gradually, as they were less limited spatially. We estimated that younger trees lost an average of 17% of root volume when excavated, while older trees lost 4%. Missing volumes were smallest in the central parts of root systems and largest in distal shallow roots. The slopes of the curves for each root type are synthetic parameters that account for differentiation due to genetics, soil properties, or mechanical stimuli. Accounting for this differentiation is critical to estimating root loss accurately.

Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster

PubMed Central

Danjon, Frédéric; Caplan, Joshua S.; Fortin, Mathieu; Meredieu, Céline

2013-01-01

Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account for the fact that root systems are comprised of multiple types of roots. We assessed whether the relationship between CSD and Vd varies as a function of root type. Additionally, we sought to identify a more accurate and time-efficient method for estimating missing root volume than is currently available. We used a database that described the 3D root architecture of Pinus pinaster root systems (5, 12, or 19 years) from a stand in southwest France. We determined the relationship between CSD and Vd for 10,000 root segments from intact root branches. Models were specified that did and did not account for root type. The relationships were then applied to the diameters of 11,000 broken root ends to estimate the volume of missing roots. CSD was nearly linearly related to the square root of Vd, but the slope of the curve varied greatly as a function of root type. Sinkers and deep roots tapered rapidly, as they were limited by available soil depth. Distal shallow roots tapered gradually, as they were less limited spatially. We estimated that younger trees lost an average of 17% of root volume when excavated, while older trees lost 4%. Missing volumes were smallest in the central parts of root systems and largest in distal shallow roots. The slopes of the curves for each root type are synthetic parameters that account for differentiation due to genetics, soil properties, or mechanical stimuli. Accounting for this differentiation is critical to estimating root loss accurately. PMID:24167506

Impact of water allocation strategies to manage groundwater resources in Western Australia: Equity and efficiency considerations

NASA Astrophysics Data System (ADS)

Iftekhar, Md Sayed; Fogarty, James

2017-05-01

In many parts of the world groundwater is being depleting at an alarming rate. Where groundwater extraction is licenced, regulators often respond to resource depletion by reducing all individual licences by a fixed proportion. This approach can be effective in achieving a reduction in the volume of water extracted, but the approach is not efficient. In water resource management the issue of the equity-efficiency trade-off has been explored in a number of contexts, but not in the context of allocation from a groundwater system. To contribute to this knowledge gap we conduct an empirical case study for Western Australia's most important groundwater system: the Gnangara Groundwater System (GGS). Resource depletion is a serious issue for the GGS, and substantial reductions in groundwater extraction are required to stabilise the system. Using an individual-based farm optimization model we study both the overall impact and the distributional impact of a fixed percentage water allocation cut to horticulture sector licence holders. The model is parameterised using water licence specific data on farm area and water allocation. The modelling shows that much of the impact of water allocation reductions can be mitigated through changing the cropping mix and the irrigation technology used. The modelling also shows that the scope for gains through the aggregation of holdings into larger farms is much greater than the potential losses due to water allocation reductions. The impact of water allocation cuts is also shown to impact large farms more than small farms. For example, the expected loss in net revenue per ha for a 10-ha farm is around three times the expected loss per ha for a 1-ha farm; and the expected loss per ha for a 25-ha farm is around five times the expected loss per ha for a 1-ha farm.

Energy budgeting and carbon footprint of transgenic cotton-wheat production system through peanut intercropping and FYM addition.

PubMed

Singh, Raman Jeet; Ahlawat, I P S

2015-05-01

Two of the most pressing sustainability issues are the depletion of fossil energy resources and the emission of atmospheric green house gases like carbon dioxide to the atmosphere. The aim of this study was to assess energy budgeting and carbon footprint in transgenic cotton-wheat cropping system through peanut intercropping with using 25-50% substitution of recommended dose of nitrogen (RDN) of cotton through farmyard manure (FYM) along with 100% RDN through urea and control (0 N). To quantify the residual effects of previous crops and their fertility levels, a succeeding crop of wheat was grown with varying rates of nitrogen, viz. 0, 50, 100, and 150 kg ha(-1). Cotton + peanut-wheat cropping system recorded 21% higher system productivity which ultimately helped to maintain higher net energy return (22%), energy use efficiency (12%), human energy profitability (3%), energy productivity (7%), carbon outputs (20%), carbon efficiency (17%), and 11% lower carbon footprint over sole cotton-wheat cropping system. Peanut addition in cotton-wheat system increased the share of renewable energy inputs from 18 to 21%. With substitution of 25% RDN of cotton through FYM, share of renewable energy resources increased in the range of 21% which resulted into higher system productivity (4%), net energy return (5%), energy ratio (6%), human energy profitability (74%), energy productivity (6%), energy profitability (5%), and 5% lower carbon footprint over no substitution. The highest carbon footprint (0.201) was recorded under control followed by 50 % substitution of RDN through FYM (0.189). With each successive increase in N dose up to 150 kg N ha(-1) to wheat, energy productivity significantly reduced and share of renewable energy inputs decreased from 25 to 13%. Application of 100 kg N ha(-1) to wheat maintained the highest grain yield (3.71 t ha(-1)), net energy return (105,516 MJ ha(-1)), and human energy profitability (223.4) over other N doses applied to wheat. Application of 50 kg N ha(-1) to wheat maintained the least carbon footprint (0.091) followed by 100 kg N ha(-1) (0.100). Our study indicates that system productivity as well as energy and carbon use efficiencies of transgenic cotton-wheat production system can be enhanced by inclusion of peanut as an intercrop in cotton and substitution of 25% RDN of cotton through FYM, as well as application of 100 kg N ha(-1) to succeeding wheat crop.

Adult root structure of Mediterranean shrubs: relationship with post-fire regenerative syndrome.

PubMed

Saura-Mas, S; Lloret, F

2014-01-01

Life-history attributes can impose differences on root system structures and properties related to nutrient and water uptake. Here, we assess whether plants with different post-fire regenerative strategies (resprouters, seeders and seeder-resprouters) differ in the topological and morphological properties of their root systems (external path, altitude, magnitude, topological index, specific root length, root length, root-to-shoot biomass ratio, length of the main axis of the root system and link length). To achieve these objectives, we sampled individuals from eight woody species in a shrubland located in the western Mediterranean Basin. We sampled the adult root systems using manual field excavation with the aid of an air compressor. The results indicate that resprouters have a higher root-to-shoot ratio, confirming their higher ability to store water, starch and nutrients and to invest in the belowground biomass. Moreover, this pattern would allow them to explore deeper parts of the soil layers. Seeder species would benefit from a higher specific root length, pointing to increased relative root growth and water uptake rates. This study confirms that seeders and resprouters may differ in nutrient and water uptake ability according to the characteristics of their root system. Species that can both resprout and establish seedlings after fire had different patterns of root system structure; in particular, root:shoot ratio was more similar to resprouters and specific root length was closer to seeders, supporting the distinct functional performance of this type of species. © 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.

Osteoinductive-nanoscaled silk/HA composite scaffolds for bone tissue engineering application.

PubMed

Huang, Xiaowei; Bai, Shumeng; Lu, Qiang; Liu, Xi; Liu, Shanshan; Zhu, Hesun

2015-10-01

Osteoinductive silk/hydroxyapatite (HA) composite scaffolds for bone regeneration were prepared by combining silk with HA/silk core-shell nanoparticles. The HA/silk nanoparticles were directly dispersed in silk solution to form uniform silk/HA blend and then composite scaffolds after a freeze-drying process. The HA/silk nanoparticles uniformly distributed in silk scaffolds at nanometer scale at varying HA content up to 40%, and substantially improved the compressive strength of the scaffolds produced. Rat bone mesenchymal stem cells (rBMSCs) were cultured in these scaffolds and cell proliferation was analyzed by confocal microscopy and DNA assay. Gene expression and biochemical assays were employed to study the influence of increasing HA/silk nanoparticles on in vitro osteogenic differentiation of rBMSCs. Increasing HA/silk nanoparticles inside silk scaffolds improved the growth and osteogenic capability of rBMSCs in the absence of osteogenic growth factors, and also significantly increased the calcium and collagen I deposition. In addition, compared to silk/HA composite scaffolds containing HA aggregates, the scaffolds loaded with HA/silk nanoparticles showed remarkably higher stiffness and better osteogenic property at same HA content, implying a preferable microenvironment for rBMSCs. These results suggest that the osteogenic property as well as mechanical property of silk/HA scaffolds could be further improved through fabricating their structure and topography at nanometer scale, providing more suitable systems for bone regeneration. © 2014 Wiley Periodicals, Inc.

Chlorhexidine-loaded hydroxyapatite microspheres as an antimicrobial delivery system and its effect on in vivo osteo-conductive properties.

PubMed

Soriano-Souza, Carlos Alberto; Rossi, Andre L; Mavropoulos, Elena; Hausen, Moema A; Tanaka, Marcelo N; Calasans-Maia, Mônica D; Granjeiro, Jose M; Rocha-Leão, Maria Helena M; Rossi, Alexandre M

2015-04-01

Hydroxyapatite (HA) has been investigated as a delivery system for antimicrobial and antibacterial agents to simultaneously stimulate bone regeneration and prevent infection. Despite evidence supporting the bactericidal efficiency of these HA carriers, few studies have focused on the effect of this association on bone regeneration. In this work, we evaluated the physico-chemical properties of hydroxyapatite microspheres loaded with chlorhexidine (CHX) at two different concentrations, 0.9 and 9.1 μgCHX/cm2 HA, and characterized their effects on in vitro osteoblast viability and bone regeneration. Ultraviolet-visible spectroscopy, scanning and transmission electron microscopy associated with energy-dispersive X-ray spectroscopy and electron energy loss spectroscopy were used to characterize the association of CHX and HA nanoparticles. The high CHX loading dose induced formation of organic CHX plate-like aggregates on the HA surface, whereas a Langmuir film was formed at the low CHX surface concentration. Quantitative evaluation of murine osteoblast viability parameters, including adhesion, mitochondrial activity and membrane integrity of cells exposed to HA/CHX extracts, revealed a cytotoxic effect for both loading concentrations. Histomorphological analysis upon implantation into the dorsal connective tissues and calvaria of rats for 7 and 42 days showed that the high CHX concentration induced the infiltration of inflammatory cells, resulting in retarded bone growth. Despite a strong decrease in in vitro cell viability, the low CHX loading dose did not impair the biocompatibility and osteoconductivity of HA during bone repair. These results indicate that high antimicrobial doses may activate a strong local inflammatory response and disrupt the long-term osteoconductive properties of CHX-HA delivery systems.

Underground tuning: quantitative regulation of root growth.

PubMed

Satbhai, Santosh B; Ristova, Daniela; Busch, Wolfgang

2015-02-01

Plants display a high degree of phenotypic plasticity that allows them to tune their form and function to changing environments. The plant root system has evolved mechanisms to anchor the plant and to efficiently explore soils to forage for soil resources. Key to this is an enormous capacity for plasticity of multiple traits that shape the distribution of roots in the soil. Such root system architecture-related traits are determined by root growth rates, root growth direction, and root branching. In this review, we describe how the root system is constituted, and which mechanisms, pathways, and genes mainly regulate plasticity of the root system in response to environmental variation. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Properties and in vitro drug release of hyaluronic acid-hydroxyethyl cellulose hydrogels for transdermal delivery of isoliquiritigenin.

PubMed

Kong, Bong Ju; Kim, Ayoung; Park, Soo Nam

2016-08-20

In the present study, the properties of hydrogel systems based on hyaluronic acid (HA)-hydroxyethyl cellulose (HEC) were investigated for effective transdermal delivery of isoliquiritigenin (ILTG). Hydrogels were synthesized by chemical cross-linking, and network structures were characterised using scanning electron microscopy (SEM) and surface area analyser. Texture properties and swelling of HA-HEC hydrogels were found to be closely linked to cross-linker concentration and swelling medium. Water in HA-HEC hydrogels was found to exist mostly in the form of free water. The viscoelasticity and the network stabilization of the hydrogels were analysed via rheological studies. The release kinetics of the hydrogel followed Fickian diffusion mechanism. In an in vitro skin penetration study, the system substantially improved the delivery of ILTG into the skin. These results indicate that the hydrogel system composed of HA and HEC has potential as a transdermal delivery system, with cross-linking density and the swelling medium influencing the properties. Copyright © 2016 Elsevier Ltd. All rights reserved.

Seasonal changes of whole root system conductance by a drought-tolerant grape root system.

PubMed

Alsina, Maria Mar; Smart, David R; Bauerle, Taryn; de Herralde, Felicidad; Biel, Carme; Stockert, Christine; Negron, Claudia; Save, Robert

2011-01-01

The role of root systems in drought tolerance is a subject of very limited information compared with above-ground responses. Adjustments to the ability of roots to supply water relative to shoot transpiration demand is proposed as a major means for woody perennial plants to tolerate drought, and is often expressed as changes in the ratios of leaf to root area (A(L):A(R)). Seasonal root proliferation in a directed manner could increase the water supply function of roots independent of total root area (A(R)) and represents a mechanism whereby water supply to demand could be increased. To address this issue, seasonal root proliferation, stomatal conductance (g(s)) and whole root system hydraulic conductance (k(r)) were investigated for a drought-tolerant grape root system (Vitis berlandieri×V. rupestris cv. 1103P) and a non-drought-tolerant root system (Vitis riparia×V. rupestris cv. 101-14Mgt), upon which had been grafted the same drought-sensitive clone of Vitis vinifera cv. Merlot. Leaf water potentials (ψ(L)) for Merlot grafted onto the 1103P root system (-0.91±0.02 MPa) were +0.15 MPa higher than Merlot on 101-14Mgt (-1.06±0.03 MPa) during spring, but dropped by approximately -0.4 MPa from spring to autumn, and were significantly lower by -0.15 MPa (-1.43±0.02 MPa) than for Merlot on 101-14Mgt (at -1.28±0.02 MPa). Surprisingly, g(s) of Merlot on the drought-tolerant root system (1103P) was less down-regulated and canopies maintained evaporative fluxes ranging from 35-20 mmol vine(-1) s(-1) during the diurnal peak from spring to autumn, respectively, three times greater than those measured for Merlot on the drought-sensitive rootstock 101-14Mgt. The drought-tolerant root system grew more roots at depth during the warm summer dry period, and the whole root system conductance (k(r)) increased from 0.004 to 0.009 kg MPa(-1) s(-1) during that same time period. The changes in k(r) could not be explained by xylem anatomy or conductivity changes of individual root segments. Thus, the manner in which drought tolerance was conveyed to the drought-sensitive clone appeared to arise from deep root proliferation during the hottest and driest part of the season, rather than through changes in xylem structure, xylem density or stomatal regulation. This information can be useful to growers on a site-specific basis in selecting rootstocks for grape clonal material (scions) grafted to them.

[Root system distribution and biomechanical characteristics of Bambusa oldhami].

PubMed

Zhou, Ben-Zhi; Xu, Sheng-Hua; An, Yan-Fei; Xu, Sheng-Hua

2014-05-01

To determine the mechanism of soil stabilizing through Bambusa oldhami root system, the vertical distribution of B. oldhami root system in soil was investigated, and the tensile strength of individual root and soil shear strength were measured in B. oldhami forest. The dry mass, length, surface area and volume of the B. oldhami root system decreased with the increasing soil depth, with more than 90% of the root system occurring in the 0-40 cm soil layer. The root class with D 1 mm occupied the highest percentage of the total in terms of root length, accounting for 79.6%, but the lowest percentage of the total in terms of root volume, accounting for 8.2%. The root class with D >2 mm was the opposite, and the root class with D= 1-2 mm stayed in between. The maximum tensile resistance of B. oldhami root, either with 12% moisture content or a saturated moisture content, increased with the increasing root diameter, while the tensile strength decreased with the increasing root diameter in accordance with power function. Tensile strength of the root, with either of the two moisture contents, was significantly different among the diameter classes, with the highest tensile strength occurring in the root with D < or = 1 mm and the lowest in the root with D > or = 2 mm. The tensile strength of root with 12% moisture content was significantly higher than that with the saturated moisture content, and less effect of moisture content on root tensile strength would occur in thicker roots. The shear strengths of B. oldhami forest soil and of bare soil both increased with the increasing soil depth. The shear strength of B. oldhami forest soil had a linear positive correlation with the root content in soil, and was significantly higher than that of bare soil. The shear strength increment in B. oldhami forest was positively correlated with the root content in soil according to an exponential function, but not related significantly with soil depth.

Low phosphate alters lateral root setpoint angle and gravitropism.

PubMed

Bai, Hanwen; Murali, Bhavna; Barber, Kevin; Wolverton, Chris

2013-01-01

Lateral roots, responsible for water and nutrient uptake, maintain nonvertical angles throughout development. Soil phosphate is one limiting nutrient for plant growth that is known to induce changes to root system architecture, such as increased lateral root formation. This study seeks to determine whether phosphate concentration affects lateral root orientation in addition to its previously described influences on root architecture. Images of intact Arabidopsis root systems were recorded for 24 h, and lateral root tip angles were measured for wild-type and mutant pgm-1 and pin3-1 roots on a full or low phosphate medium. Setpoint angles of unstimulated root systems were determined, as were gravitropic responses of lateral roots over time. The root system setpoint angles of wild-type and mutant pin3-1 roots showed a shift toward a more vertical orientation on low orthophosphate (Pi) medium. The gravitropic responses of both pgm-1 and pin3-1 roots on low Pi medium was elevated relative to control Pi medium. Mutations in two phosphate transporters with high levels of expression in the root showed a gravitropic response similar to wild-type roots grown on low Pi, supporting a role for Pi status in regulating lateral root gravitropism. Lateral root orientation and gravitropism are affected by Pi status and may provide an important additional parameter for describing root responses to low Pi. The data also support the conclusion that gravitropic setpoint angle reacts to nutrient status and is under dynamic regulation.

Cloning, biochemical characterization and expression of a sunflower (Helianthus annuus L.) hexokinase associated with seed storage compounds accumulation.

PubMed

Troncoso-Ponce, M A; Rivoal, J; Dorion, S; Moisan, M-C; Garcés, R; Martínez-Force, E

2011-03-01

A full-length hexokinase cDNA, HaHXK1, was cloned and characterized from Helianthus annuus L. developing seeds. Based on its sequence and phylogenetic relationships, HaHXK1 is a membrane-associated (type-B) hexokinase. The predicted structural model resembles known hexokinase structures, folding into two domains of unequal size: a large and a small one separated by a deep cleft containing the residues involved in the enzyme active site. A truncated version, without the 24 N-terminal residues, was heterologously expressed in Escherichia coli, purified to electrophoretic homogeneity using immobilized metal ion affinity chromatography and biochemically characterized. The purified enzyme behaved as a monomer on size exclusion chromatography and had a specific activity of 19.3 μmol/min/mg protein, the highest specific activity ever reported for a plant hexokinase. The enzyme had higher affinity for glucose and mannose relative to fructose, but the enzymatic efficiency was higher with glucose. Recombinant HaHXK1 was inhibited by ADP and was insensitive either to glucose-6-phosphate or to trehalose-6-phosphate. Its expression profile showed higher levels in heterotrophic tissues, developing seeds and roots, than in photosynthetic ones. A time course of HXK activity and expression in seeds showed that the highest HXK levels are found at the early stages of reserve compounds, lipids and proteins accumulation. Copyright © 2010 Elsevier GmbH. All rights reserved.

Partitioning Carbon Dioxide Emission and Assessing Dissolved Organic Carbon Leaching of a Drained Peatland Cultivated with Pineapple at Saratok, Malaysia

PubMed Central

Lim Kim Choo, Liza Nuriati; Ahmed, Osumanu Haruna

2014-01-01

Pineapples (Ananas comosus (L.) Merr.) cultivation on drained peats could affect the release of carbon dioxide (CO2) into the atmosphere and also the leaching of dissolved organic carbon (DOC). Carbon dioxide emission needs to be partitioned before deciding on whether cultivated peat is net sink or net source of carbon. Partitioning of CO2 emission into root respiration, microbial respiration, and oxidative peat decomposition was achieved using a lysimeter experiment with three treatments: peat soil cultivated with pineapple, bare peat soil, and bare peat soil fumigated with chloroform. Drainage water leached from cultivated peat and bare peat soil was also analyzed for DOC. On a yearly basis, CO2 emissions were higher under bare peat (218.8 t CO2 ha/yr) than under bare peat treated with chloroform (205 t CO2 ha/yr), and they were the lowest (179.6 t CO2 ha/yr) under cultivated peat. Decreasing CO2 emissions under pineapple were attributed to the positive effects of photosynthesis and soil autotrophic activities. An average 235.7 mg/L loss of DOC under bare peat suggests rapid decline of peat organic carbon through heterotrophic respiration and peat decomposition. Soil CO2 emission depended on moderate temperature fluctuations, but it was not affected by soil moisture. PMID:25215335

Carbon emissions from decomposition of fire-killed trees following a large wildfire in Oregon, United States

NASA Astrophysics Data System (ADS)

Campbell, John L.; Fontaine, Joseph B.; Donato, Daniel C.

2016-03-01

A key uncertainty concerning the effect of wildfire on carbon dynamics is the rate at which fire-killed biomass (e.g., dead trees) decays and emits carbon to the atmosphere. We used a ground-based approach to compute decomposition of forest biomass killed, but not combusted, in the Biscuit Fire of 2002, an exceptionally large wildfire that burned over 200,000 ha of mixed conifer forest in southwestern Oregon, USA. A combination of federal inventory data and supplementary ground measurements afforded the estimation of fire-caused mortality and subsequent 10 year decomposition for several functionally distinct carbon pools at 180 independent locations in the burn area. Decomposition was highest for fire-killed leaves and fine roots and lowest for large-diameter wood. Decomposition rates varied somewhat among tree species and were only 35% lower for trees still standing than for trees fallen at the time of the fire. We estimate a total of 4.7 Tg C was killed but not combusted in the Biscuit Fire, 85% of which remains 10 years after. Biogenic carbon emissions from fire-killed necromass were estimated to be 1.0, 0.6, and 0.4 Mg C ha-1 yr-1 at 1, 10, and 50 years after the fire, respectively; compared to the one-time pyrogenic emission of nearly 17 Mg C ha-1.

Effects of nitrogen application rates on net annual global warming potential and greenhouse gas intensity in double-rice cropping systems of the Southern China.

PubMed

Chen, Zhongdu; Chen, Fu; Zhang, Hailin; Liu, Shengli

2016-12-01

The net global warming potential (NGWP) and net greenhouse gas intensity (NGHGI) of double-rice cropping systems are not well documented. We measured the NGWP and NGHGI including soil organic carbon (SOC) change and indirect emissions (IE) from double-crop rice fields with fertilizing systems in Southern China. These experiments with three different nitrogen (N) application rates since 2012 are as follows: 165 kgN ha -1 for early rice and 225 kgN ha -1 for late rice (N1), which was the local N application rates as the control; 135 kgN ha -1 for early rice and 180 kgN ha -1 for late rice (N2, 20 % reduction); and 105 kgN ha -1 for early rice and 135 kgN ha -1 for late rice (N3, 40 % reduction). Results showed that yields increased with the increase of N application rate, but without significant difference between N1 and N2 plots. Annual SOC sequestration rate under N1 was estimated to be 1.15 MgC ha -1  year -1 , which was higher than those under other fertilizing systems. Higher N application tended to increase CH 4 emissions during the flooded rice season and significantly increased N 2 O emissions from drained soils during the nonrice season, ranking as N1 > N2 > N3 with significant difference (P < 0.05). Two-year average IE has a huge contribution to GHG emissions mainly coming from the higher N inputs in the double-rice cropping system. Reducing N fertilizer usage can effectively decrease the NGWP and NGHGI in the double-rice cropping system, with the lowest NGHGI obtained in the N2 plot (0.99 kg CO 2 -eq kg -1 yield year -1 ). The results suggested that agricultural economic viability and GHG mitigation can be simultaneously achieved by properly reducing N fertilizer application in double-rice cropping systems.

Harm avoidance in adolescents modulates late positive potentials during affective picture processing.

PubMed

Zhang, Wenhai; Lu, Jiamei; Ni, Ziyin; Liu, Xia; Wang, Dahua; Shen, Jiliang

2013-08-01

Research in adults has shown that individual differences in harm avoidance (HA) modulate electrophysiological responses to affective stimuli. To determine whether HA in adolescents modulates affective information processing, we collected event-related potentials from 70 adolescents while they viewed 90 pictures from the Chinese affective picture system. Multiple regressions revealed that HA negatively predicted late positive potential (LPP) for positive pictures and positively predicted for negative pictures; however, HA did not correlate with LPP for neutral pictures. The results suggest that at the late evaluative stage, high-HA adolescents display attentional bias to negative pictures while low-HA adolescents display attentional bias to negative pictures. Moreover, these dissociable attentional patterns imply that individual differences in adolescents' HA modulate the late selective attention mechanism of affective information. Copyright © 2013. Published by Elsevier Ltd.

To what extent may changes in the root system architecture of Arabidopsis thaliana grown under contrasted homogenous nitrogen regimes be explained by changes in carbon supply? A modelling approach.

PubMed

Brun, François; Richard-Molard, Céline; Pagès, Loïc; Chelle, Michaël; Ney, Bertrand

2010-05-01

Root system architecture adapts to low nitrogen (N) nutrition. Some adaptations may be mediated by modifications of carbon (C) fluxes. The objective of this study was to test the hypothesis that changes in root system architecture under different N regimes may be accounted for by using simple hypotheses of C allocation within the root system of Arabidopsis thaliana. With that purpose, a model during vegetative growth was developed that predicted the main traits of root system architecture (total root length, lateral root number, and specific root length). Different experimental data sets crossing three C levels and two N homogenous nutrition levels were generated. Parameters were estimated from an experiment carried out under medium C and high N conditions. They were then checked under other CxN conditions. It was found that the model was able to simulate correctly C effects on root architecture in both high and low N nutrition conditions, with the same parameter values. It was concluded that C flux modifications explained the major part of root system adaptation to N supply, even if they were not sufficient to simulate some changes, such as specific root length.

Next Generation Image-Based Phenotyping of Root System Architecture

NASA Astrophysics Data System (ADS)

Davis, T. W.; Shaw, N. M.; Cheng, H.; Larson, B. G.; Craft, E. J.; Shaff, J. E.; Schneider, D. J.; Piñeros, M. A.; Kochian, L. V.

2016-12-01

The development of the Plant Root Imaging and Data Acquisition (PRIDA) hardware/software system enables researchers to collect digital images, along with all the relevant experimental details, of a range of hydroponically grown agricultural crop roots for 2D and 3D trait analysis. Previous efforts of image-based root phenotyping focused on young cereals, such as rice; however, there is a growing need to measure both older and larger root systems, such as those of maize and sorghum, to improve our understanding of the underlying genetics that control favorable rooting traits for plant breeding programs to combat the agricultural risks presented by climate change. Therefore, a larger imaging apparatus has been prototyped for capturing 3D root architecture with an adaptive control system and innovative plant root growth media that retains three-dimensional root architectural features. New publicly available multi-platform software has been released with considerations for both high throughput (e.g., 3D imaging of a single root system in under ten minutes) and high portability (e.g., support for the Raspberry Pi computer). The software features unified data collection, management, exploration and preservation for continued trait and genetics analysis of root system architecture. The new system makes data acquisition efficient and includes features that address the needs of researchers and technicians, such as reduced imaging time, semi-automated camera calibration with uncertainty characterization, and safe storage of the critical experimental data.

Human Augmentics: augmenting human evolution.

PubMed

Kenyon, Robert V; Leigh, Jason

2011-01-01

Human Augmentics (HA) refers to technologies for expanding the capabilities, and characteristics of humans. One can think of Human Augmentics as the driving force in the non-biological evolution of humans. HA devices will provide technology to compensate for human biological limitations either natural or acquired. The strengths of HA lie in its applicability to all humans. Its interoperability enables the formation of ecosystems whereby augmented humans can draw from other realms such as "the Cloud" and other augmented humans for strength. The exponential growth in new technologies portends such a system but must be designed for interaction through the use of open-standards and open-APIs for system development. We discuss the conditions needed for HA to flourish with an emphasis on devices that provide non-biological rehabilitation.

Do root hydraulic properties change during the early vegetative stage of plant development in barley (Hordeum vulgare)?

PubMed Central

Suku, Shimi; Knipfer, Thorsten; Fricke, Wieland

2014-01-01

Background and Aims As annual crops develop, transpirational water loss increases substantially. This increase has to be matched by an increase in water uptake through the root system. The aim of this study was to assess the contributions of changes in intrinsic root hydraulic conductivity (Lp, water uptake per unit root surface area, driving force and time), driving force and root surface area to developmental increases in root water uptake. Methods Hydroponically grown barley plants were analysed during four windows of their vegetative stage of development, when they were 9–13, 14–18, 19–23 and 24–28 d old. Hydraulic conductivity was determined for individual roots (Lp) and for entire root systems (Lpr). Osmotic Lp of individual seminal and adventitious roots and osmotic Lpr of the root system were determined in exudation experiments. Hydrostatic Lp of individual roots was determined by root pressure probe analyses, and hydrostatic Lpr of the root system was derived from analyses of transpiring plants. Key Results Although osmotic and hydrostatic Lp and Lpr values increased initially during development and were correlated positively with plant transpiration rate, their overall developmental increases (about 2-fold) were small compared with increases in transpirational water loss and root surface area (about 10- to 40-fold). The water potential gradient driving water uptake in transpiring plants more than doubled during development, and potentially contributed to the increases in plant water flow. Osmotic Lpr of entire root systems and hydrostatic Lpr of transpiring plants were similar, suggesting that the main radial transport path in roots was the cell-to-cell path at all developmental stages. Conclusions Increase in the surface area of root system, and not changes in intrinsic root hydraulic properties, is the main means through which barley plants grown hydroponically sustain an increase in transpirational water loss during their vegetative development. PMID:24287810

Do root hydraulic properties change during the early vegetative stage of plant development in barley (Hordeum vulgare)?

PubMed

Suku, Shimi; Knipfer, Thorsten; Fricke, Wieland

2014-02-01

As annual crops develop, transpirational water loss increases substantially. This increase has to be matched by an increase in water uptake through the root system. The aim of this study was to assess the contributions of changes in intrinsic root hydraulic conductivity (Lp, water uptake per unit root surface area, driving force and time), driving force and root surface area to developmental increases in root water uptake. Hydroponically grown barley plants were analysed during four windows of their vegetative stage of development, when they were 9-13, 14-18, 19-23 and 24-28 d old. Hydraulic conductivity was determined for individual roots (Lp) and for entire root systems (Lp(r)). Osmotic Lp of individual seminal and adventitious roots and osmotic Lp(r) of the root system were determined in exudation experiments. Hydrostatic Lp of individual roots was determined by root pressure probe analyses, and hydrostatic Lp(r) of the root system was derived from analyses of transpiring plants. Although osmotic and hydrostatic Lp and Lp(r) values increased initially during development and were correlated positively with plant transpiration rate, their overall developmental increases (about 2-fold) were small compared with increases in transpirational water loss and root surface area (about 10- to 40-fold). The water potential gradient driving water uptake in transpiring plants more than doubled during development, and potentially contributed to the increases in plant water flow. Osmotic Lp(r) of entire root systems and hydrostatic Lp(r) of transpiring plants were similar, suggesting that the main radial transport path in roots was the cell-to-cell path at all developmental stages. Increase in the surface area of root system, and not changes in intrinsic root hydraulic properties, is the main means through which barley plants grown hydroponically sustain an increase in transpirational water loss during their vegetative development.

Hyaluronic acid modified pH-sensitive liposomes for targeted intracellular delivery of doxorubicin.

PubMed

Paliwal, Shivani Rai; Paliwal, Rishi; Agrawal, Govind Prasad; Vyas, Suresh Prasad

2016-12-01

Surface-modified pH-sensitive liposomal system may be useful for intracellular delivery of chemotherapeutics. Achieving site-specific targeting with over-expressed hyaluronic acid (HA) receptors along with using pH sensitive liposome carrier for intracellular drug delivery was the aim of this study. Stealth HA-targeted pH-sensitive liposomes (SL-pH-HA) were developed and evaluated to achieve effective intracellular delivery of doxorubicin (DOX) vis-a-vis enhanced antitumor activity. The in vitro release studies demonstrated that the release of DOX from SL-pH-HA was pH-dependent, i.e. faster at mildly acidic pH ∼5, compared to physiological pH ∼7.4. SLpH-HA was evaluated for their cytotoxicity potential on CD44 receptor expressing MCF-7 cells. The half maximal inhibitory concentration (IC50) of SL-pH-HA and SL-HA were about 1.9 and 2.5 μM, respectively, after 48 h of incubation. The quantitative uptake study revealed higher localization of targeted liposomes in the receptor positive cells, which was further confirmed by fluorescent microscopy. The antitumor efficacy of the DOX-loaded HA-targeted pH-sensitive liposomes was also verified in a tumor xenograft mouse model. DOX was efficiently delivered to the tumor site by active targeting via HA and CD44 receptor interaction. The major side-effect of conventional DOX formulation, i.e. cardiotoxicity was also estimated by measuring serum enzyme levels of LDH and CPK and found to be minimized with developed formulation. Overall, HA targeted pH-sensitive liposomes were significantly more potent than the non-targeted liposomes in cells expressing high levels of CD44. Results strongly implies the promise of such liposomal system as an intracellular drug delivery carrier developed for potential anticancer treatment.

Soybean (Glycine max L.) N-Turnover Effects on Sustainable Agriculture

NASA Astrophysics Data System (ADS)

László, Márton, ,, Dr.

2010-05-01

A lysimeter N-experiment was carried out over a period of three years (1986-1988) in Hungary on a slightly calcareous Ramann sandy-loam brown forest soil. In a trial without seed inoculation, the effect of N-fertiliser was studied on yield and N-uptake and the mineral (NO3+ NO2 ) N-content of 0-90 cm soil-layer of soybean. On the given soil with regulated optimal water supply the highest quantity of 200 kg/ha N-dose seemed to give alredy over-fertilization and lowered in its tendency the grain and pod yield. About one third of the dry matter production without roots and foliage at harvest was given by the grain yield, which ranged between 1.8-5.4 t/ha, depending on the treatment applied and on years. The N-content was accumulated chiefly in the grain, its concentration exceeded about 7-10 times the N-content of roots and stalk. The half of the total N-uptake, on an average 102-256 kg/ha, was built in the grain. The highest N-yield = 631 kg/ha was achieved in 1988 by 150 kg/ha N-fertilization per year. In the first years the N-uptake of the plants agreed with the total supply (mineral reserve of soil + given in the form of fertilizer + precipitation N), while in the 3th year a double amount was recorded. The mineral reserve of N in the soil did not decrease at the end of the trial. Presumably, the soil of soybean in monoculture lost gradually its "Rhisobium japonicum sterility", the biological N-fixation increased with the time. In the first years without seed inoculation however, soybean may be in need of N-fertilization. Key Words: soybean, nitrogen, sustainable agriculture Introduction Soya is an important crop and is now grown all over the world (Márton et al. 1998, Márton et al. 1998, Kádár and Márton 1999, Márton and Kádár 1999, Márton and Kádár 1998). This crop originated in the Far East and has been grown in China for more than four thousand years. It has for long been regarded as one of the five sacred grains with rice, wheat, barley and millet on account of its exceptional food value. Nowadays of planted area, it comes fifth after wheat, rice, maize and barley. World soya production is twice as great as that of all other grain legumes. It is a legume able to fix the atmospheric nitrogen it needs for growth through the agency of specific (Rhisobium japonicum) bacteria (Haberlandt 1878, Kurnik et al. 1987, Bódis et al. 1988). Soya is an exelent preparatory crop. It improves soil structure, it leaves considerable residues of nitrogen for the following crop (Walter et al. 1970, Marcus-Wuner 1983, Márton et al. 1990, Németh 1995): it is a first-class entry for winter wheat. It is harvested in good time to allow cultivations for winter wheat and also leaves the ground in good condition for direct drilling. It is a good break crop in cereal rotations, limiting the build-up of fungal diseases. Soya is a reliable crop, tolerant of temporary water excess, more tolerant of cold than sorghum at shooting and flowering and it is more drought resistant than maize. Soya is demanding crop and responds well to physical and chemical soil improvement. The grain of present-day varieties contains on average 40-43 % protein and 21 % oil in dry matter. The various uses for soybeans can be summarised thus: a; whole grain, ground or unground after cooking, for human and animal foods, b; oil in human nutrition, c; special oilseed cakes for human diet (low-fat flour) and on a larger scale, for animal nutrition as a complement to forages and cereals. In the subject of much soybean research has been to find means of improving yields (Norman 1963, Walter et al. 1970, Caldwell 1973, Hinson and Hartwig 1977, Mengel and Kirkby 1982, Marcus-Wuner 1983, Márton et al. 1990, Németh 1995). Among the means for yield improvement fertilizers (nitrogen) occupy a prime position. The nitrogen is indispensable to the plant, being a yield and an essential constituent of amino acids, proteins and nucleic acids (Fauconnier 1986). Soya uses some 300 kg/ha N, a large proportion of which is contained in grain protein (grain contains about 40% protein or 6% N). Sources of this N are residues in the soil, symbiotic fixation by root nodules and some times N fertilizer. High rates of N fertilizer suppress N2 fixation and most specialists recommend either no fertilizer nitrogen or a modest application of 30-50 kg/ha either at sowing or just before flowering. Some writers have noted a favourable effect of N applied at that time on N2 fixation, root nodule weight and activity (Eaglesham et al. 1983). For this reasons we were analysed in Hungary the effects of nitrogen fertilizer on yield and N-turnover of soybean in lysimeters. Materials and Methods A lysimeter N-experiment was carried out over a period of three years (1986-1988) in Hungary on a slightly calcareous Ramann sandy-loam brown forest soil. In a trial without seed inoculation, the effect of N-fertiliser was studied on yield and N-uptake and the mineral (NO3+ NO2 ) N-content of 0-90 cm soil-layer of soybean. The characteristics of the soil before trial were the followings: pH(H2O) 7.2, pH(KCl) 7.0, humus 1.3%, CaCO3 2.1%, silty clay 27%, easily soluble phosphorus and potassium content (AL-P2O5 80 ppm, AL-K2O 100 ppm) referred to as a medium supplied soil. The lysimeter had a soil volume of 4m3 and a growing surface of 4 m2. The basic fertiliZation with 100 kg/ha P2O5 and 120 kg/ha K2O was applied each year. N-treatments was applied at rates of 0, 40, 80, 120 kg/ha in 1986 and 0, 100, 150 and 200 kg/ha in 1987 and 1988 in the form of NH4NO3. There were thus 4 treatments x 3 replications = 12 lysimeters in all. The plant density of soya, sown without inoculation, was adjusted to 500 000 plants/ha. The water supply was optimalized to 70% field water capacity. The samples of the soil were analysed for the macro and microelements. The mineral (NO3+ NO2 ) N-content of the soil were determined by the BREMNER-KEENEY method (1966). The mass of the individual plant parts (roots, stem, leaves, pod, seeds / 6-6 plants) were analyzed separetly for the major macroelements in order to trace the nutrient uptake of the plants. The datas of experiments were estimated by MANOVA. Results and Discussion The most important results of the trial can be summarized as follows. On the given soil with regulated optimal water supply the highest quantity of 200 kg/ha N-dose seemed to give alredy over-fertilization and lowered in its tendency the grain and pod yield (table 1). About one third of the dry matter production without roots and foliage at harvest was given by the grain yield, which ranged between 1.8-5.4 t/ha, depending on the treatment applied and on years. The N-content was accumulated chiefly in the grain, its concentration exceeded about 7-10 times the N-content of roots and stalk (table 2). The half of the total N-uptake, on an average 102-256 kg/ha, was built in the grain. The highest N-yield = 631 kg/ha was achieved in 1988 by 150 kg/ha N-fertilization per year (table 3). In the first years the N-uptake of the plants agreed with the total supply (mineral reserve of soil + given in the form of fertilizer + precipitation N), while in the 3th year a double amount was recorded (table 4). The mineral reserve of N in the soil did not decrease at the end of the trial. Presumably, the soil of soybean in monoculture lost gradually its "Rhisobium japonicum sterility", the biological N-fixation increased with the time. In the first years without seed inoculation however, soybean may be in need of N-fertilization. References Bódis, L.-Kralovanszky, U.P. (1988): A szója. Mezőgazdasági Kiadó, Budapest. Caldwell, B.E. (1973): Soybeans: improvement, production and uses. Editor, Am. Soc. of Agron. Madison. Wisc. 92 p. Eaglesham, A.R.J.-Hassouna, S.-Seegers, R. (1983): Fertilizer N effects on N2 fixation by cowpea and soybean. Agron. J. 75: 61-66. Fauconnier, D. (1986): Fertilizers for yield and quality. 9. 60 p. IPI-Bulletin. Paris. Haberlandt, F. (1878): Die Sojabohne. Ergebnisse der Studien und Versuche über die Anbauwürdigkeit dieser neu einzuführenden Culturpflanze. Gerolds' Sohn. Wien. Hinson, K.-Hartwig, E.E. (1977): Soybean production in the topics. FAO. Rome. 680 p. Kádár, I.-Márton, L. (1999): Mineral nutrient cycle of soya. Agroch. and soil science. 48: 50-67. Kurnik, E.-Szabó, L. (1987): A szója. Magyarország Kulturflórája, III. kötet, 18. füzet. Akadémiai Kiadó. Budapest. Marcus-Wyner, L.-Rains, D.W. (1983): Patterns of ammonium absorption and acetylene deduction during soybean developmental growht. Physiol. Pl. 59. K., 1. sz. 79-82. Copenhagen. Márton, L.-Kismányoky, T.-Kádár, I. (1990): Testing the N-supply and N-turnover of soyabean in lysimeters. Plant production. 39: 55-64. Márton, L.-Fazekas, M.-Chrappán, Gy. (1998): Egy új pillangós. Magy. Mezőgazdaság. 53. 9. 22. Márton, L.-Szüts, G.-Kádár, I. (1998): Effect of N supplies on the protein and amino acid contents of soya flour. Plant production. 47: 417-422. Márton, L.-Kádár, I. (1999): N-mütrágyázás hatása a szója levelének klorofill és karotinoid tartalmára, valamint hozamára. Agrokémia és Talajtan. In press. Márton, L.-Kádár, I. (1998): Effect of nitrogen supplies on the yield components of soya. Plant production. 47: 677-687. Mengel, K.-Kirkby, E.A. (1982): Principles of plant nutrition. Int. Potash Inst. Bern. 655 p. Németh, T. (1995): Talajaink szervesanyag-tartalma és nitrogénforgalma. MTA Talajtani és Agrokémiai Kutató Intézete. Budapest. Norman, A. (1963): The soybean genetics, breeding, physiology, nutrition management. Acad. press. NY. 239 p. Walter, O.S.-Samuel, R.A. (1980): Modern soybean production. Champ, Illinois. USA. 192 p. Table 1. Effect of N-fertilization on the yield of soybean. Lysimeter trial, Keszthely, 1986-88. Air-dried weight, kg/ha at harvest. N kg/ha Main root Stalk Foliage Pod Grain Total At the and of August 1986. 0 672 1870 2448 750 1814 7554 40 790 2406 3952 1238 2108 10494 80 828 3044 5045 1325 2666 12908 120 837 3876 4703 2077 3006 14499 LSD5% 360 1320 994 960 740 4320 Average 782 2799 4037 1348 2398 11364 At the begining of September 1987. 0 510 2285 2665 1431 2679 9570 100 690 2740 2765 2106 3756 12056 150 990 3640 3695 3328 5443 17096 200 995 3965 3360 2552 4130 15002 LSD5% 450 1920 345 740 1920 5440 Average 796 3158 3121 2354 4002 13431 At the begining of September 1988. 0 718 6368 4160 603 3100 14949 100 750 6340 4260 792 3575 15718 150 1060 8560 7995 1700 4355 23670 200 508 9105 5725 925 4185 20448 LSD5% 480 3240 445 530 495 6120 Average 759 7593 5535 1005 3804 18696 Table 2. Effect of fertilization on N-content of soybean. Lysimeter trial, Keszthely, 1986-88. N% in air-dried weight N kg/ha Main root Stalk Foliage Pod Grain At the and of August 1986. 0 0.45 0.53 1.38 0.93 4.24 40 0.39 0.39 1.66 1.02 4.19 80 0.38 0.33 2.13 1.03 4.15 120 0.38 0.34 3.17 1.05 4.37 LSD5% 0.06 0.16 0.55 0.20 0.16 Average 0.40 0.40 2.08 1.01 4.24 At the begining of September 1987. 0 0.54 0.50 1.85 0.49 6.34 100 0.58 0.58 2.12 0.50 6.22 150 0.54 0.58 2.32 0.54 6.28 200 0.56 0.69 2.64 0.63 6.45 LSD5% 0.10 0.25 0.17 0.20 0.55 Average 0.56 0.59 2.23 0.54 6.32 At the begining of September 1988. 0 0.82 1.00 2.32 1.50 6.74 100 0.82 1.06 2.59 1.69 6.82 150 0.92 1.10 2.52 1.72 6.82 200 0.72 1.06 2.12 1.60 6.58 LSD5% 0.11 0.20 0.19 0.48 0.16 Average 0.82 1.06 2.39 1.63 6.74 Table 3. Effect of N-fertilization on N-uptake of soybean. Lysimeter trial, Keszthely, 1986-88. N kg/ha N kg/ha Main root Stalk Foliage Pod Grain Total At the and of August 1986. 0 3.0 9.9 33.7 7.0 76.9 131 40 3.1 9.5 65.4 12.6 88.3 179 80 3.2 10.1 107.6 13.7 110.7 245 120 3.2 13.3 149.2 21.8 131.2 319 LSD5% 1.1 3.5 22.4 4.8 32.4 66 Average 3.1 10.7 89.0 13.8 101.8 218 At the begining of September 1987. 0 2.8 11.5 49.3 7.0 170.0 240 100 4.0 15.8 58.7 10.4 233.7 323 150 5.4 21.2 85.9 17.8 341.6 472 200 5.6 27.2 88.8 16.1 266.4 404 LSD5% 1.6 9.4 8.8 4.4 112.2 104 Average 4.4 18.9 70.7 12.8 252.9 360 At the begining of September 1988. 0 5.9 63.6 96.7 9.0 208.8 384 100 6.1 67.2 110.3 13.4 244.0 441 150 9.8 93.7 201.1 29.1 297.0 631 200 3.7 96.1 121.1 14.8 275.6 511 LSD5% 4.2 24.7 20.8 8.4 72.4 140 Average 6.4 80.2 132.3 16.6 256.4 492 Table 4. N-turnover of soybean. Lysimeter trial, Keszthely, 1986-88. N kg/ha Given by N-fertilizer In soil be-fore fert. Input byprecip. Total(supply) Uptake byplant Found in soil at harvest Balance *EDM In 1986 0 124 10 134 131 +3 206 40 119 10 169 179 -10 174 80 136 10 226 245 -19 154 120 178 10 308 319 -11 143 LSD5% 62 - 72 66 - 16 Average 139 10 209 218 -9 169 In 1987 0 232 19 251 240 +11 203 100 220 19 339 323 +16 201 150 231 19 400 472 -72 252 200 227 19 446 404 +42 248 LSD5% 42 - 59 104 - 64 Average 228 19 359 360 -1 226 In 1988 0 140 11 151 384 -233 136 100 145 11 256 441 -185 127 150 157 11 318 631 -313 178 200 166 11 377 511 -134 210 LSD5% 35 - 41 140 - 69 Average 152 11 276 492 -216 163 Comments: Leaching of N was between 0-8 kg/ha independently of treatments, so it was not taken into consideration at calculations. *Extraction Destillation Method by BREMNER-KEENEY (1966) Address: László Márton Research Institute for Soil Science and Agricultural Chemistry Hungarian Academy of Sciences. Budapest. II. Herman O. u. 15. 1022. Hungary. Tel/Fax:0036-1-3558491. E-mail:marton@rissac.hu

Nitrogen economics of root foraging: Transitive closure of the nitrate–cytokinin relay and distinct systemic signaling for N supply vs. demand

PubMed Central

Ruffel, Sandrine; Krouk, Gabriel; Ristova, Daniela; Shasha, Dennis; Birnbaum, Kenneth D.; Coruzzi, Gloria M.

2011-01-01

As sessile organisms, root plasticity enables plants to forage for and acquire nutrients in a fluctuating underground environment. Here, we use genetic and genomic approaches in a “split-root” framework—in which physically isolated root systems of the same plant are challenged with different nitrogen (N) environments—to investigate how systemic signaling affects genome-wide reprogramming and root development. The integration of transcriptome and root phenotypes enables us to identify distinct mechanisms underlying “N economy” (i.e., N supply and demand) of plants as a system. Under nitrate-limited conditions, plant roots adopt an “active-foraging strategy”, characterized by lateral root outgrowth and a shared pattern of transcriptome reprogramming, in response to either local or distal nitrate deprivation. By contrast, in nitrate-replete conditions, plant roots adopt a “dormant strategy”, characterized by a repression of lateral root outgrowth and a shared pattern of transcriptome reprogramming, in response to either local or distal nitrate supply. Sentinel genes responding to systemic N signaling identified by genome-wide comparisons of heterogeneous vs. homogeneous split-root N treatments were used to probe systemic N responses in Arabidopsis mutants impaired in nitrate reduction and hormone synthesis and also in decapitated plants. This combined analysis identified genetically distinct systemic signaling underlying plant N economy: (i) N supply, corresponding to a long-distance systemic signaling triggered by nitrate sensing; and (ii) N demand, experimental support for the transitive closure of a previously inferred nitrate–cytokinin shoot–root relay system that reports the nitrate demand of the whole plant, promoting a compensatory root growth in nitrate-rich patches of heterogeneous soil. PMID:22025711

A scanner system for high-resolution quantification of variation in root growth dynamics of Brassica rapa genotypes.

PubMed

Adu, Michael O; Chatot, Antoine; Wiesel, Lea; Bennett, Malcolm J; Broadley, Martin R; White, Philip J; Dupuy, Lionel X

2014-05-01

The potential exists to breed for root system architectures that optimize resource acquisition. However, this requires the ability to screen root system development quantitatively, with high resolution, in as natural an environment as possible, with high throughput. This paper describes the construction of a low-cost, high-resolution root phenotyping platform, requiring no sophisticated equipment and adaptable to most laboratory and glasshouse environments, and its application to quantify environmental and temporal variation in root traits between genotypes of Brassica rapa L. Plants were supplied with a complete nutrient solution through the wick of a germination paper. Images of root systems were acquired without manual intervention, over extended periods, using multiple scanners controlled by customized software. Mixed-effects models were used to describe the sources of variation in root traits contributing to root system architecture estimated from digital images. It was calculated that between one and 43 replicates would be required to detect a significant difference (95% CI 50% difference between traits). Broad-sense heritability was highest for shoot biomass traits (>0.60), intermediate (0.25-0.60) for the length and diameter of primary roots and lateral root branching density on the primary root, and lower (<0.25) for other root traits. Models demonstrate that root traits show temporal variations of various types. The phenotyping platform described here can be used to quantify environmental and temporal variation in traits contributing to root system architecture in B. rapa and can be extended to screen the large populations required for breeding for efficient resource acquisition.

Intensive ground vegetation growth mitigates the carbon loss after forest disturbance.

PubMed

Zehetgruber, Bernhard; Kobler, Johannes; Dirnböck, Thomas; Jandl, Robert; Seidl, Rupert; Schindlbacher, Andreas

2017-01-01

Slow or failed tree regeneration after forest disturbance is increasingly observed in the central European Alps, potentially amplifying the carbon (C) loss from disturbance. We aimed at quantifying C dynamics of a poorly regenerating disturbance site with a special focus on the role of non-woody ground vegetation. Soil CO 2 efflux, fine root biomass, ground vegetation biomass, tree increment and litter input were assessed in (i) an undisturbed section of a ~ 110 years old Norway spruce stand, (ii) in a disturbed section which was clear-cut six years ago (no tree regeneration), and (iii) in a disturbed section which was clear-cut three years ago (no tree regeneration). Total soil CO 2 efflux was similar across all stand sections (8.5 ± 0.2 to 8.9 ± 0.3 t C ha -1  yr. -1 ). The undisturbed forest served as atmospheric C sink (2.1 t C ha -1  yr. -1 ), whereas both clearings were C sources to the atmosphere. The source strength three years after disturbance (-5.5 t C ha -1  yr. -1 ) was almost twice as high as six years after disturbance (-2.9 t C ha -1  yr. -1 ), with declining heterotrophic soil respiration and the high productivity of dense graminoid ground vegetation mitigating C loss. C loss after disturbance decreases with time and ground vegetation growth. Dense non-woody ground vegetation cover can hamper tree regeneration but simultaneously decrease the ecosystem C loss. The role of ground vegetation should be more explicitly taken into account in forest C budgets assessing disturbance effects.

The Rhizobium sp. strain NGR234 systemically suppresses arbuscular mycorrhizal root colonization in a split-root system of barley (Hordeum vulgare).

PubMed

Khaosaad, Thanasan; Staehelin, Christian; Steinkellner, Siegrid; Hage-Ahmed, Karin; Ocampo, Juan Antonio; Garcia-Garrido, Jose Manuel; Vierheilig, Horst

2010-11-01

Nitrogen-fixing bacteria (rhizobia) form a nodule symbiosis with legumes, but also induce certain effects on non-host plants. Here, we used a split-root system of barley to examine whether inoculation with Rhizobium sp. strain NGR234 on one side of a split-root system systemically affects arbuscular mycorrhizal (AM) root colonization on the other side. Mutant strains of NGR234 deficient in Nod factor production (strain NGRΔnodABC), perception of flavonoids (strain NGRΔnodD1) and secretion of type 3 effector proteins (strain NGRΩrhcN) were included in this study. Inoculation resulted in a systemic reduction of AM root colonization with all tested strains. However, the suppressive effect of strain NGRΩrhcN was less pronounced. Moreover, levels of salicylic acid, an endogenous molecule related to plant defense, were increased in roots challenged with rhizobia. These data indicate that barley roots perceived NGR234 and that a systemic regulatory mechanism of AM root colonization was activated. The suppressive effect appears to be Nod factor independent, but enhanced by type 3 effector proteins of NGR234. Copyright © Physiologia Plantarum 2010.

C-shaped root canal in a maxillary first molar: a case report.

PubMed

Yilmaz, Z; Tuncel, B; Serper, A; Calt, S

2006-02-01

This case report presents an unusual C-shaped root canal system in a maxillary first molar tooth. Although C-shaped root canals are most frequently seen in the mandibular second molar, they may also appear in maxillary molars. A literature search revealed only a few case reports of C-shaped root canal systems in maxillary molars. The present case describes a C-shaped canal in the buccal root of a maxillary first molar. The endodontic access cavity displayed two canal orifices, one leading to the canal system in the buccal root, the other into the palatal root canal system. In the buccal root, what appeared to be the mesial and distal canals joined to form a single C-shaped canal. --Careful examination of radiographs and the internal anatomy of teeth is essential.-- The location and morphology of root canals should be identified at high magnification under the microscope.

Case study of developing an integrated water and nitrogen scheme for agricultural systems on the North China Plain

NASA Astrophysics Data System (ADS)

Liu, Y.; Tao, F.; Luo, Y.; Ma, J.

2013-12-01

Appropriate irrigation and nitrogen fertilization, along with suitable crop management strategies, are essential prerequisites for optimum yields in agricultural systems. This research attempts to provide a scientific basis for sustainable agricultural production management for the North China Plain and other semi-arid regions. Based on a series of 72 treatments over 2003-2008, an optimized water and nitrogen scheme for winter wheat/summer maize cropping system was developed. Integrated systems incorporating 120 mm of water with 80 kg N ha-1 N fertilizer were used to simulate winter wheat yields in Hebei and 120 mm of water with 120 kg N ha-1 were used to simulate winter wheat yields in Shandong and Henan provinces in 2000-2007. Similarly, integrated treatments of 40 kg N ha-1 N fertilizer were used to simulate summer maize yields in Hebei, and 80 kg N ha-1 was used to simulate summer maize yields in Shandong and Henan provinces in 2000-2007. Under the optimized scheme, 341.74 107 mm ha-1 of water and 575.79 104 Mg of urea fertilizer could be saved per year under the wheat/maize rotation system. Despite slight drops in the yields of wheat and maize in some areas, water and fertilizer saving has tremendous long-term eco-environmental benefits.

Adaptation of fine roots to annual fertilization and irrigation in a 13-year-old Pinus pinaster stand.

PubMed

Bakker, M R; Jolicoeur, E; Trichet, P; Augusto, L; Plassard, C; Guinberteau, J; Loustau, D

2009-02-01

Effects of fertilization and irrigation on fine roots and fungal hyphae were studied in 13-year-old maritime pine (Pinus pinaster Aït. in Soland), 7 years after the initiation of the treatments. The fertilization trials consisted of a phosphorus treatment, a complete fertilizer treatment (N, P, K, Ca and Mg), and an unfertilized treatment (control). Fertilizers were applied annually and were adjusted according to foliar target values. Two irrigation regimes (no irrigation and irrigation of a set amount each day) were applied from May to October. Root samples to depths of 120 cm were collected in summer of 2005, and the biomass of small roots (diameter 2-20 mm) and fine roots (diameter

Influence of humic acid on the removal of arsenate and arsenic by ferric chloride: effects of pH, As/Fe ratio, initial As concentration, and co-existing solutes.

PubMed

Kong, Yanli; Kang, Jing; Shen, Jimin; Chen, Zhonglin; Fan, Leitao

2017-01-01

The influence of humic acid (HA) on the removal of arsenic by FeCl 3 was systematically studied in this paper. Jar tests were performed to investigate the influence on arsenic during FeCl 3 coagulation of the pH adjusting method, the initial As/Fe ratio, the equilibrium As concentration, and co-occurring anions and cations. Compared with results in HA-free systems, the removal trends of arsenic in HA solutions were quite different. It was found that As(V) removal was higher at low equilibrium concentration, yet the opposite was true for As(III) removal. The presence of HA influenced the effective number of active sites for arsenic removal by FeCl 3 flocculation. In addition, in the presence of HA, the impacts of co-existing solutions on arsenic removal were also different from that of an HA-free system. This study examined the influence of co-occurring anions, such as phosphate, sulfate, and silicate on arsenic removal, depending on their ability to compete for sorption sites and to hinder or facilitate the aggregation of ferric hydroxide flocs. The presence of Ca 2+ or Cd 2+ significantly increased arsenic removal at higher pH. Low concentrations of dissolved HA and high concentrations of colloid affected the adsorption of arsenic onto iron oxide. The influence of HA on the adsorption of arsenic onto iron oxide primarily depended on the relative content of the dissolved and mineral combination states of HA and the interface combination forms.

Anti-Fas conjugated hyaluronic acid microsphere gels for neural stem cell delivery.

PubMed

Shendi, Dalia; Albrecht, Dirk R; Jain, Anjana

2017-02-01

Central nervous system (CNS) injuries and diseases result in neuronal damage and loss of function. Transplantation of neural stem cells (NSCs) has been shown to improve locomotor function after transplantation. However, due to the immune and inflammatory response at the injury site, the survival rate of the engrafted cells is low. Engrafted cell viability has been shown to increase when transplanted within a hydrogel. Hyaluronic acid (HA) hydrogels have natural anti-inflammatory properties and the backbone can be modified to introduce bioactive agents, such as anti-Fas, which we have previously shown to promote NSC survival while suppressing immune cell activity in bulk hydrogels in vitro. Although bulk HA hydrogels have shown to promote stem cell survival, microsphere gels for NSC encapsulation and delivery may have additional advantages. In this study, a flow-focusing microfluidic device was used to fabricate either vinyl sulfone-modified HA (VS-HA) or anti-Fas-conjugated HA (anti-Fas HA) microsphere gels encapsulated with NSCs. The majority of encapsulated NSCs remained viable for at least 24 h in the VS-HA and anti-Fas HA microsphere gels. Moreover, T-cells cultured in suspension with the anti-Fas HA microsphere gels had reduced viability after contact with the microsphere gels compared to the media control and soluble anti-Fas conditions. This approach can be adapted to encapsulate various cell types for therapeutic strategies in other physiological systems in order to increase survival by reducing the immune response. © 2016 Wiley Periodicals, Inc. J Biomed Mater Res Part A: 105A: 608-618, 2017. © 2016 Wiley Periodicals, Inc.

Developing suitable methods for effective characterization of electrical properties of root segments

NASA Astrophysics Data System (ADS)

Ehosioke, Solomon; Phalempin, Maxime; Garré, Sarah; Kemna, Andreas; Huisman, Sander; Javaux, Mathieu; Nguyen, Frédéric

2017-04-01

The root system represents the hidden half of the plant which plays a key role in food production and therefore needs to be well understood. Root system characterization has been a great challenge because the roots are buried in the soil. This coupled with the subsurface heterogeneity and the transient nature of the biogeochemical processes that occur in the root zone makes it difficult to access and monitor the root system over time. The traditional method of point sampling (root excavation, monoliths, minirhizotron etc.) for root investigation does not account for the transient nature and spatial variability of the root zone, and it often disturbs the natural system under investigation. The quest to overcome these challenges has led to an increase in the application of geophysical methods. Recent studies have shown a correlation between bulk electrical resistivity and root mass density, but an understanding of the contribution of the individual segments of the root system to that bulk signal is still missing. This study is an attempt to understand the electrical properties of roots at the segment scale (1-5cm) for more effective characterization of electrical signal of the full root architecture. The target plants were grown in three different media (pot soil, hydroponics and a mixture of sand, perlite and vermiculite). Resistance measurements were carried out on a single segment of each study plant using a voltmeter while the diameter was measured using a digital calliper. The axial resistance was calculated using the measured resistance and the geometric parameters. This procedure was repeated for each plant replica over a period of 75 days which enabled us to study the effects of age, growth media, diameter and length on the electrical response of the root segments of the selected plants. The growth medium was found to have a significant effect on the root electrical response, while the effect of root diameter on their electrical response was found to vary among the plants. More work is still required to further validate these results and also to develop better systems to study the electrical behaviour of root segments. Findings from our review entitled "an overview of the geophysical approach to root investigation", suggest that SIP and EIT geophysical methods could be very useful for root investigations, thus more work is in progress to develop these systems for assessing the root electrical response at various scales.

Understanding the development of roots exposed to contaminants and the potential of plant-associated bacteria for optimization of growth

PubMed Central

Remans, Tony; Thijs, Sofie; Truyens, Sascha; Weyens, Nele; Schellingen, Kerim; Keunen, Els; Gielen, Heidi; Cuypers, Ann; Vangronsveld, Jaco

2012-01-01

Background and Scope Plant responses to the toxic effects of soil contaminants, such as excess metals or organic substances, have been studied mainly at physiological, biochemical and molecular levels, but the influence on root system architecture has received little attention. Nevertheless, the precise position, morphology and extent of roots can influence contaminant uptake. Here, data are discussed that aim to increase the molecular and ecological understanding of the influence of contaminants on root system architecture. Furthermore, the potential of plant-associated bacteria to influence root growth by their growth-promoting and stress-relieving capacities is explored. Methods Root growth parameters of Arabidopsis thaliana seedlings grown in vertical agar plates are quantified. Mutants are used in a reverse genetics approach to identify molecular components underlying quantitative changes in root architecture after exposure to excess cadmium, copper or zinc. Plant-associated bacteria are isolated from contaminated environments, genotypically and phenotypically characterized, and used to test plant root growth improvement in the presence of contaminants. Key Results The molecular determinants of primary root growth inhibition and effects on lateral root density by cadmium were identified. A vertical split-root system revealed local effects of cadmium and copper on root development. However, systemic effects of zinc exposure on root growth reduced both the avoidance of contaminated areas and colonization of non-contaminated areas. The potential for growth promotion and contaminant degradation of plant-associated bacteria was demonstrated by improved root growth of inoculated plants exposed to 2,4-di-nitro-toluene (DNT) or cadmium. Conclusions Knowledge concerning the specific influence of different contaminants on root system architecture and the molecular mechanisms by which this is achieved can be combined with the exploitation of plant-associated bacteria to influence root development and increase plant stress tolerance, which should lead to more optimal root systems for application in phytoremediation or safer biomass production. PMID:22634257

Understanding the development of roots exposed to contaminants and the potential of plant-associated bacteria for optimization of growth.

PubMed

Remans, Tony; Thijs, Sofie; Truyens, Sascha; Weyens, Nele; Schellingen, Kerim; Keunen, Els; Gielen, Heidi; Cuypers, Ann; Vangronsveld, Jaco

2012-07-01

Plant responses to the toxic effects of soil contaminants, such as excess metals or organic substances, have been studied mainly at physiological, biochemical and molecular levels, but the influence on root system architecture has received little attention. Nevertheless, the precise position, morphology and extent of roots can influence contaminant uptake. Here, data are discussed that aim to increase the molecular and ecological understanding of the influence of contaminants on root system architecture. Furthermore, the potential of plant-associated bacteria to influence root growth by their growth-promoting and stress-relieving capacities is explored. Root growth parameters of Arabidopsis thaliana seedlings grown in vertical agar plates are quantified. Mutants are used in a reverse genetics approach to identify molecular components underlying quantitative changes in root architecture after exposure to excess cadmium, copper or zinc. Plant-associated bacteria are isolated from contaminated environments, genotypically and phenotypically characterized, and used to test plant root growth improvement in the presence of contaminants. The molecular determinants of primary root growth inhibition and effects on lateral root density by cadmium were identified. A vertical split-root system revealed local effects of cadmium and copper on root development. However, systemic effects of zinc exposure on root growth reduced both the avoidance of contaminated areas and colonization of non-contaminated areas. The potential for growth promotion and contaminant degradation of plant-associated bacteria was demonstrated by improved root growth of inoculated plants exposed to 2,4-di-nitro-toluene (DNT) or cadmium. Knowledge concerning the specific influence of different contaminants on root system architecture and the molecular mechanisms by which this is achieved can be combined with the exploitation of plant-associated bacteria to influence root development and increase plant stress tolerance, which should lead to more optimal root systems for application in phytoremediation or safer biomass production.

The Influence of Plant Root Systems on Subsurface Flow: Implications for Slope Stability

EPA Science Inventory

Although research has explained how plant roots mechanically stabilize soils, in this article we explore how root systems create networks of preferential flow and thus influence water pressures in soils to trigger landslides. Root systems may alter subsurface flow: Hydrological m...

A simple and cost-effective method for cable root detection and extension measurement in estuary wetland forests

NASA Astrophysics Data System (ADS)

Vovides, Alejandra G.; Marín-Castro, Beatriz; Barradas, Guadalupe; Berger, Uta; López-Portillo, Jorge

2016-12-01

This work presents the development of a low-cost method to measure the length cable roots of black mangrove (Avicennia germinans) trees to define the boundaries of central part of the anchoring root system (CPRS) without the need to fully expose root systems. The method was tested to locate and measure the length shallow woody root systems. An ultrasonic Doppler fetal monitor (UD) and a stock of steel rods (SR) were used to probe root locations without removing sediments from the surface, measure their length and estimate root-soil plate dimensions. The method was validated by comparing measurements with root lengths taken through direct measurement of excavated cable roots and from root-soil plate radii (exposed root-soil material when a tree tips over) of five up-rooted trees with stem diameters (D130) ranging between 10 and 50 cm. The mean CPRS radius estimated with the use of the Doppler was directly correlated with tree stem diameter and was not significantly different from the root-soil plate mean radius measured from up-rooted trees or from CPRS approximated by digging trenches. Our method proved to be effective and reliable in following cable roots for large amounts of trees of both black and white mangrove trees. In a period of 40 days of work, three people were capable of measuring 648 roots belonging to 81 trees, out of which 37% were found grafted to other tree roots. This simple method can be helpful in following shallow root systems with minimal impact and help map root connection networks of grafted trees.

Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply.

PubMed

Wang, Xiaohua; Chen, Yanling; Thomas, Catherine L; Ding, Guangda; Xu, Ping; Shi, Dexu; Grandke, Fabian; Jin, Kemo; Cai, Hongmei; Xu, Fangsen; Yi, Bin; Broadley, Martin R; Shi, Lei

2017-08-01

Breeding crops with ideal root system architecture for efficient absorption of phosphorus is an important strategy to reduce the use of phosphate fertilizers. To investigate genetic variants leading to changes in root system architecture, 405 oilseed rape cultivars were genotyped with a 60K Brassica Infinium SNP array in low and high P environments. A total of 285 single-nucleotide polymorphisms were associated with root system architecture traits at varying phosphorus levels. Nine single-nucleotide polymorphisms corroborate a previous linkage analysis of root system architecture quantitative trait loci in the BnaTNDH population. One peak single-nucleotide polymorphism region on A3 was associated with all root system architecture traits and co-localized with a quantitative trait locus for primary root length at low phosphorus. Two more single-nucleotide polymorphism peaks on A5 for root dry weight at low phosphorus were detected in both growth systems and co-localized with a quantitative trait locus for the same trait. The candidate genes identified on A3 form a haplotype 'BnA3Hap', that will be important for understanding the phosphorus/root system interaction and for the incorporation into Brassica napus breeding programs. © The Author 2017. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

Characterizing root system characteristics with Electrical resistivity Tomography: a virtual rhizotron simulation

NASA Astrophysics Data System (ADS)

Rao, Sathyanarayan; Ehosioke, Solomon; Lesparre, Nolwenn; Nguyen, Frédéric; Javaux, Mathieu

2017-04-01

Electrical Resistivity Tomography (ERT) is more and more used for monitoring soil water content in a cropped soil. Yet, the impact of roots on the signal is often neglected and a topic of controversy. In several studies related to soil-root system, it has been showed that the measured root mass density statistically correlates with the electrical conductivity (EC) data obtained from ERT. In addition, some studies suggest that some roots are more electrically conductive than soil for most water content. Thus, higher EC of roots suggest that it might have a measurable impact on ERT signals. In this work, virtual rhizotrons are simulated using the software package called R-SWMS that solves water and solute transport in plant root-soil system, including root growth. The distribution of water content obtained from R-SWMS simulation is converted into EC data using pedo-physical models. The electrical properties of roots and rhizosphere are explicitly included in the EC data to form a conductivity map (CM) with a very detailed spatial resolution. Forward ERT simulations is then carried out for CM generated for various root architectures and soil conditions to study the impact of roots on ERT forward (current and voltage patterns) and inverse solutions. It is demonstrated that under typical injection schemes with lateral electrodes, root system is hardly measurable. However, it is showed that adding electrodes and constraints on the ERT inversion based on root architecture help quantifying root system mass and extent.

Phosphate Availability Alters Architecture and Causes Changes in Hormone Sensitivity in the Arabidopsis Root System1

PubMed Central

López-Bucio, José; Hernández-Abreu, Esmeralda; Sánchez-Calderón, Lenin; Nieto-Jacobo, María Fernanda; Simpson, June; Herrera-Estrella, Luis

2002-01-01

The postembryonic developmental program of the plant root system is plastic and allows changes in root architecture to adapt to environmental conditions such as water and nutrient availability. Among essential nutrients, phosphorus (P) often limits plant productivity because of its low mobility in soil. Therefore, the architecture of the root system may determine the capacity of the plant to acquire this nutrient. We studied the effect of P availability on the development of the root system in Arabidopsis. We found that at P-limiting conditions (<50 μm), the Arabidopsis root system undergoes major architectural changes in terms of lateral root number, lateral root density, and primary root length. Treatment with auxins and auxin antagonists indicate that these changes are related to an increase in auxin sensitivity in the roots of P-deprived Arabidopsis seedlings. It was also found that the axr1-3, axr2-1, and axr4-1 Arabidopsis mutants have normal responses to low P availability conditions, whereas the iaa28-1 mutant shows resistance to the stimulatory effects of low P on root hair and lateral root formation. Analysis of ethylene signaling mutants and treatments with 1-aminocyclopropane-1-carboxylic acid showed that ethylene does not promote lateral root formation under P deprivation. These results suggest that in Arabidopsis, auxin sensitivity may play a fundamental role in the modifications of root architecture by P availability. PMID:12011355

Streaming potential method for characterizing interaction of electrical double layers between rice roots and Fe/Al oxide-coated quartz in situ.

PubMed

Liu, Zhao-Dong; Wang, Hai-Cui; Li, Jiu-Yu; Xu, Ren-Kou

2017-10-01

The interaction between rice roots and Fe/Al oxide-coated quartz was investigated through zeta potential measurements and column leaching experiments in present study. The zeta potentials of rice roots, Fe/Al oxide-coated quartz, and the binary systems containing rice roots and Fe/Al oxide-coated quartz were measured by a specially constructed streaming potential apparatus. The interactions between rice roots and Fe/Al oxide-coated quartz particles were evaluated/deduced based on the differences of zeta potentials between the binary systems and the single system of rice roots. The zeta potentials of the binary systems moved in positive directions compared with that of rice roots, suggesting that there were overlapping of diffuse layers of electric double layers on positively charged Fe/Al oxide-coated quartz and negatively charged rice roots and neutralization of positive charge on Fe/Al oxide-coated quartz with negative charge on rice roots. The greater amount of positive charges on Al oxide led to the stronger interaction of Al oxide-coated quartz with rice roots and the more shift of zeta potential compared with Fe oxide. The overlapping of diffuse layers on Fe/Al oxide-coated quartz and rice roots was confirmed by column leaching experiments. The greater overlapping of diffuse layers on Al oxide and rice roots led to more simultaneous adsorptions of K + and NO 3 - and greater reduction in leachate electric conductivity when the column containing Al oxide-coated quartz and rice roots was leached with KNO 3 solution, compared with the columns containing rice roots and Fe oxide-coated quartz or quartz. When the KNO 3 solution was replaced with deionized water to flush the columns, more K + and NO 3 - were desorbed from the binary system containing Al oxide-coated quartz and rice roots than from other two binary systems, suggesting that the stronger electrostatic interaction between Al oxide and rice roots promoted the desorption of K + and NO 3 - from the binary system and enhanced overlapping of diffuse layers on these oppositely charged surfaces compared with other two binary systems. In conclusion, the overlapping of diffuse layers occurred between positively charged Fe/Al oxides and rice roots, which led to neutralization of opposite charge and affected adsorption and desorption of ions onto and from the charged surfaces of Fe/Al oxides and rice roots.

Mesoporous silica nanoparticles functionalized with hyaluronic acid. Effect of the biopolymer chain length on cell internalization.

PubMed

Nairi, Valentina; Magnolia, Silvia; Piludu, Marco; Nieddu, Mariella; Caria, Cristian Antonio; Sogos, Valeria; Vallet-Regì, Maria; Monduzzi, Maura; Salis, Andrea

2018-02-12

Mesoporous silica nanoparticles (MSNs) were functionalized with amino groups (MSN-NH 2 ) and then with hyaluronic acid, a biocompatible biopolymer which can be recognized by CD44 receptors in tumor cells, to obtain a targeting drug delivery system. To this purpose, three hyaluronic acid samples differing for the molecular weight, namely HA S (8-15 kDa), HA M (30-50 kDa) and HA L (90-130 kDa), were used. The MSN-HA S , MSN-HA M , and MSN-HA L materials were characterized through zeta potential and dynamic light scattering measurements at pH = 7.4 and T = 37 °C to simulate physiological conditions. While zeta potential showed an increasing negative value with the increase of the HA chain length, an anomalous value of the hydrodynamic diameter was observed for MSN-HA L , which was smaller than that of MSN-HA S and MSN-HA M samples. The cellular uptake of MSN-HA samples on HeLa cells at 37 °C was studied by optical and electron microscopy. HA chain length affected significantly the cellular uptake that occurred at a higher extent for MSN-NH 2 and MSN-HA S than for MSN-HA M and MSN-HA L samples. Cellular uptake experiments carried out at 4 °C showed that the internalization process was inhibited for MSN-HA samples but not for MSN-NH 2 . This suggests the occurrence of two different mechanisms of internalization. For MSN-NH 2 the uptake is mainly driven by the attractive electrostatic interaction with membrane phospholipids, while MSN-HA internalization involves CD44 receptors overexpressed in HeLa cells. Copyright © 2018 Elsevier B.V. All rights reserved.

Affinity of the interface between hydroxyapatite (0001) and titanium (0001) surfaces: a first-principles investigation.

PubMed

Sun, Jin P; Dai, Jianhong; Song, Yan; Wang, You; Yang, Rui

2014-12-10

A basic understanding of the affinity between the hydroxyapatite (HA) and α-Ti surfaces is obtained through electronic structure calculations by first-principles method. The surface energies of HA(0001), HA (011̅0), HA (101̅1), and Ti(0001) surfaces have been calculated. The HA(0001) presents the most thermodynamically stable of HA. The HA/Ti interfaces were constructed by two kinds of interface models, the single interface (denoted as SI) and the double-interface (denoted as DI). Two methods, the full relaxation and the UBER, were applied to determine the interfacial separation and the atomic arrangement in the interfacial zone. The works of adhesion of interfaces with various stoichiometric HA surfaces were evaluated. For the HA(0001)/Ti(0001) interfaces, the work of adhesion is strongly dependent on the chemical environment of the HA surface. The values are -2.33, -1.52, and -0.80 J/m(2) for the none-, single-, and double-Ca terminated HA/Ti interfaces, respectively. The influence of atomic relaxation on the work of adhesion and interface separation is discussed. Full relaxation results include -1.99 J/m(2) work of adhesion and 0.220 nm separation between HA and Ti for the DI of 1-Ca-HA/Ti interface, while they are -1.14 J/m(2) and 0.235 nm by partial relaxation. Analysis of electronic structure reveals that charge transfer between HA and Ti slabs occurs during the formation of the HA/Ti interface. The transfer generates the Ti-O or Ti-Ca bonds across the interface and drives the HA/Ti interface system to metallic characteristic. The energetically favorable interfaces are formed when the outmost layer of HA comprises more O atoms at the interface.

HDPE-HA composites synthetized by in situ polymerization with different filler content

NASA Astrophysics Data System (ADS)

Hermán, V.; Karam, A.; Albano, C.; Romero, K.; González, G.

2012-07-01

In Situ ethylene polymerization was used to synthesize high density polyethylene - hydroxyapatite (HDPE-HA) composites, employing Cp2ZrCl2/MAO as catalytic system. A good dispersion of HA into the HDPE matrix was obtained when the following synthesis conditions were combined: high stirring velocities (2000 rpm), low quantities of solvent (100 mL), and 10 °C. Under these conditions different filler content was used to synthetized HDPE-HA composites. An interaction between HA and HDPE was obtained by FTIR. On the other hand, thermal analysis indicated that no significant differences were observed between HDPE and the composites.

Ecotoxicity evaluation of an amended soil contaminated with uranium and radium using sensitive plants

NASA Astrophysics Data System (ADS)

Abreu, M. M.; Lopes, J.; Magalhães, M. C. F.; Santos, E.

2012-04-01

In the centre-north granitic regions of Portugal, during the twenty century radium and uranium were exploited from approximately 60 mines. The closure of all uranium mines, in 2001, raised concerns regarding the possible chemical and radiological effects on the inhabitants health around the mine areas. The main objective of this work was to evaluate the effect of organic amendments and organic hydroxiapatite in the ecotoxicity reduction of agricultural soils contaminated with uranium and radium, by germination and growth tests of two sensitive plants (Lactuca sativa L. and Zea mays L.). Pot experiments, under controlled conditions, were undertaken during two months of incubation at 70% of the soil water-holding capacity. Fluvisol from Urgeiriça region containing large concentration of Utotal (635 mg/kg) and 226Ra (2310 Bq/kg) was used. The soil available fraction, extracted with ammonium acetate, corresponds to 90% and 25% of total concentration of Utotal and 226Ra, respectively. Fine ground bone (FB) and sheep manure (OM) single or mixtures were used as amendments. Four treatments, plus control were carried out in triplicate: (A) soil+40 Mg/ha of FB; (B) soil+70 Mg/ha of OM; (C) soil+70 Mg/ha of OM+40 Mg/ha of FB; (D) soil+70 Mg/ha of OM+20 Mg/ha of FB. After the incubation moist soils were kept at 4-5 °C and subsamples were used for leachates extraction following DIN 38414-S4 method. Maize and lettuce seeds were sown in filter paper moistened with the leachates aqueous solutions and in the moist soil for germination and growth tests. Seedlings after three days of germination were used for growth tests in hydroponic, during seven days, using the leachates. Five seeds per replicate were used. Soil presented: pH(H2O)=5.15, EC=7.3 µS/cm; and Corgnic=12.5 g/kg. After two months of incubation soil pH increased to a maximum of 6.53 in amended samples, and EC showed a dramatic increase when compared to the control (0.398 dS/m), from 1.5 dS/m (treatment-A) to 4.7 dS/m (treatment-D). A decrease of the available fraction of uranium (90-99%) and radium (70-78%) in the four treatments, compared to the control samples, was observed after incubation. Leachates presented the following characteristics: pH (5.7-6.9); EC (74-1490 µS/cm); Ra (0.43-1.38 Bq/L); U (0.55-2.71 mg/L); Na (1.3-20.8 mg/L); K (1.3-82.9 mg/L); and P (0.02-2.31 g/L). Germination of both species was influenced by substrata being, in general, higher on filter paper than in soil, where it is smaller for lettuce than for maize, especially for treatments. Whatever the substrata, biomass (both species) differences among control and treatments were not observed, except for lettuce growing on soil, where control is greater than treatment-B. In hydroponics some differences concerning shoots and roots elongation was observed among species and treatments: aerial part - similar for maize, greater values for lettuce in treatments B, C and D; roots - similar for lettuce, greater values for maize in treatment-C. Lettuce and maize in control and in the three substrata did not show any ecotoxic symptoms due to high uranium and radium concentrations.

Accounting for sap flow from different parts of the root system improves the prediction of xylem ABA concentration in plants grown with heterogeneous soil moisture.

PubMed

Dodd, Ian C; Egea, Gregorio; Davies, William J

2008-01-01

When soil moisture is heterogeneous, sap flow from, and ABA status of, different parts of the root system impact on leaf xylem ABA concentration ([X-ABA]leaf). The robustness of a model for predicting [X-ABA]leaf was assessed. 'Two root-one shoot' grafted sunflower (Helianthus annuus L.) plants received either deficit irrigation (DI, each root system received the same irrigation volumes) or partial rootzone drying (PRD, only one root system was watered and the other dried the soil). Irrespective of whether relative sap flow was assessed using sap flow sensors in vivo or by pressurization of de-topped roots, each root system contributed similarly to total sap flow during DI, while sap flow from roots in drying soil declined linearly with soil water potential (Psisoil) during PRD. Although Psisoil of the irrigated pot determined the threshold Psisoil at which sap flow from roots in drying soil decreased, the slope of this decrease was independent of the wet pot Psisoil. Irrespective of whether sap was collected from the wet or dry root system of PRD plants, or a DI plant, root xylem ABA concentration increased as Psisoil declined. The model, which weighted ABA contributions of each root system according to the sap flow from each, almost perfectly explained [X-ABA] immediately above the graft union. That the model overestimated measured [X-ABA]leaf may result from changes in [X-ABA] along the transport pathway or an artefact of collecting xylem sap from detached leaves. The implications of declining sap flow through partially dry roots during PRD for the control of stomatal behaviour and irrigation scheduling are discussed.

RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation.

PubMed

Jeudy, Christian; Adrian, Marielle; Baussard, Christophe; Bernard, Céline; Bernaud, Eric; Bourion, Virginie; Busset, Hughes; Cabrera-Bosquet, Llorenç; Cointault, Frédéric; Han, Simeng; Lamboeuf, Mickael; Moreau, Delphine; Pivato, Barbara; Prudent, Marion; Trouvelot, Sophie; Truong, Hoai Nam; Vernoud, Vanessa; Voisin, Anne-Sophie; Wipf, Daniel; Salon, Christophe

2016-01-01

In order to maintain high yields while saving water and preserving non-renewable resources and thus limiting the use of chemical fertilizer, it is crucial to select plants with more efficient root systems. This could be achieved through an optimization of both root architecture and root uptake ability and/or through the improvement of positive plant interactions with microorganisms in the rhizosphere. The development of devices suitable for high-throughput phenotyping of root structures remains a major bottleneck. Rhizotrons suitable for plant growth in controlled conditions and non-invasive image acquisition of plant shoot and root systems (RhizoTubes) are described. These RhizoTubes allow growing one to six plants simultaneously, having a maximum height of 1.1 m, up to 8 weeks, depending on plant species. Both shoot and root compartment can be imaged automatically and non-destructively throughout the experiment thanks to an imaging cabin (RhizoCab). RhizoCab contains robots and imaging equipment for obtaining high-resolution pictures of plant roots. Using this versatile experimental setup, we illustrate how some morphometric root traits can be determined for various species including model (Medicago truncatula), crops (Pisum sativum, Brassica napus, Vitis vinifera, Triticum aestivum) and weed (Vulpia myuros) species grown under non-limiting conditions or submitted to various abiotic and biotic constraints. The measurement of the root phenotypic traits using this system was compared to that obtained using "classic" growth conditions in pots. This integrated system, to include 1200 Rhizotubes, will allow high-throughput phenotyping of plant shoots and roots under various abiotic and biotic environmental conditions. Our system allows an easy visualization or extraction of roots and measurement of root traits for high-throughput or kinetic analyses. The utility of this system for studying root system architecture will greatly facilitate the identification of genetic and environmental determinants of key root traits involved in crop responses to stresses, including interactions with soil microorganisms.

Characterizing the Physics of Plant Root Gravitropism: A Systems Modeling Approach

DTIC Science & Technology

1999-01-01

with its root directly downward, the root and stem undergo a gravitropic response. Statoliths (gravity-sensing organelles) within the root cap respond...this study is to model the plant root gravitropic response using classical controls and system identification principles. Specific objectives of this

Long-term effects of liming on health and growth of a Masson pine stand damaged by soil acidification in Chongqing, China.

PubMed

Li, Zhiyong; Wang, Yanhui; Liu, Yuan; Guo, Hao; Li, Tao; Li, Zhen-Hua; Shi, Guoan

2014-01-01

In the last decades, the Masson pine (Pinus massoniana) forests in Chongqing, southwest China, have increasingly declined. Soil acidification was believed to be an important cause. Liming is widely used as a measure to alleviate soil acidification and its damage to trees, but little is known about long-term effects of liming on the health and growth of declining Masson pine forests. Soil chemical properties, health condition (defoliation and discoloration), and growth were evaluated following application of limestone powder (0 (unlimed control), 1, 2, 3, and 4 t ha(-1)) in an acidified and declining Masson pine stand at Tieshanping (TSP) of Chongqing. Eight years after liming, in the 0-20 cm and 20-40 cm mineral soil layers, soil pH values, exchangeable calcium (Ca) contents, and Ca/Al molar ratios increased, but exchangeable aluminum (Al) levels decreased, and as a result, length densities of living fine roots of Masson pine increased, with increasing dose. Mean crown defoliation of Masson pines (dominant, codominant and subdominant pines, according to Kraft classes 1-3) decreased with increasing dose, and it linearly decreased with length densities of living fine roots. However, Masson pines (Kraft classes 1-3) in all treatments showed no symptoms of discoloration. Mean current-year twig length, twig dry weight, needle number per twig, needle length per twig, and needle dry weight per twig increased with increasing dose. Over 8 years, mean height increment of Masson pines (Kraft classes 1-3) increased from 5.5 m in the control to 5.8, 6.9, 8.3, and 9.5 m in the 1, 2, 3, and 4 t ha(-1) lime treatments, and their mean DBH (diameter at breast height) increment increased from 3.1 to 3.2, 3.8, 4.9, and 6.2 cm, respectively. The values of all aboveground growth parameters linearly increased with length densities of living fine roots. Our results show that liming improved tree health and growth, and these effects increased with increasing dose.

Quantification of extraradical soil mycelium and ectomycorrhizas of Boletus edulis in a Scots pine forest with variable sporocarp productivity.

PubMed

De la Varga, Herminia; Agueda, Beatriz; Martínez-Peña, Fernando; Parladé, Javier; Pera, Joan

2012-01-01

The availability of most edible ectomycorrhizal mushrooms depends on their natural fructification. Sporocarp formation of these fungi is linked to habitat characteristics and climate conditions, but these data alone do not explain all the trends of fungal fruiting and dynamics. It could be hypothesized that the amount of soil mycelia could also be related to the production of carpophores. Soil samples (five cylinders of 250 cm(3) per plot) were taken monthly, from September to November, in five fenced permanent plots (5 × 5 m) in Pinar Grande (Soria, Spain), a Pinus sylvestris stand situated in the north of the Sistema Ibérico mountain range. Plots were chosen to establish a gradient of Boletus edulis productivity from 0 to 38.5 kg/ha year, according to the mean fresh weight of sporocarps collected during the last 10 years. B. edulis ectomycorrhizal root tips were identified in each soil sample according to its morphology and counted. DNA extractions were performed with the PowerSoil(TM) DNA Isolation Kit and quantification of extraradical soil mycelium by real-time polymerase chain reaction using specific primers and a TaqMan® probe. The concentration of soil mycelium of B. edulis (mg mycelium/g soil) did not differ significantly between plots (p = 0.1397), and sampling time (p = 0.7643) within the fructification period. The number of mycorrhizal short roots per soil volume showed significant differences between the plots (p = 0.0050) and the three sampling times (p < 0.0001). No significant correlation between the number of mycorrhizas and the productivity of the plot (kg of B. edulis/ha year) was detected (p = 0.615). A statistically significant positive correlation (p = 0.0481) was detected between the concentration of mycelia of B. edulis in the soil samples and the presence of short roots mycorrhizal with B. edulis in these samples. The productivity of the plots, in terms of sporocarps produced during the last 10 years, was not correlated either with the concentration of soil mycelium or with the presence or abundance of ectomycorrhizas.

A novel poloxamers/hyaluronic acid in situ forming hydrogel for drug delivery: rheological, mucoadhesive and in vitro release properties.

PubMed

Mayol, Laura; Quaglia, Fabiana; Borzacchiello, Assunta; Ambrosio, Luigi; La Rotonda, Maria I

2008-09-01

The influence of hyaluronic acid (HA) on the gelation properties of poloxamers blends has been studied with the aim of engineering thermosensitive and mucoadhesive polymeric platforms for drug delivery. The gelation temperature (T(gel)), viscoelastic properties and mucoadhesive force of the systems were investigated and optimised by means of rheological analyses. Poloxamers micellar diameter was evaluated by photon correlation spectroscopy (PCS). Moreover in order to explore the feasibility of these platforms for drug delivery, the optimised systems were loaded with acyclovir and its release properties studied in vitro. By formulating poloxamers/HA platforms, at specific concentrations, it was possible to obtain a thermoreversible gel with a T(gel) close to body temperature. The addition of HA did not hamper the self assembling process of poloxamers just delaying the gelation temperature of few Celsius degrees. Furthermore, HA presence led to a strong increase of the poloxamer rheological properties thus indicating possible HA interactions with micelles through secondary bonds, such as hydrogen ones, which reinforce the gel structure. These interactions could also explain PCS results which show, in systems containing HA, aggregates with hydrodynamic diameters much higher than those of poloxamer micelles. Mucoadhesion experiments showed a rheological synergism between poloxamers/HA gels and mucin dispersion which led to a change of the flow behaviour from a quite Newtonian one of the separate solutions to a pseudoplastic one of their mixture. In vitro release experiments indicated that the optimised platform was able to prolong and control acyclovir release for more than 6h.

Hyaluronic acid and Arg-Gly-Asp peptide modified Graphene oxide with dual receptor-targeting function for cancer therapy.

PubMed

Guo, Yufeng; Xu, Haixing; Li, Yiping; Wu, Fengzheng; Li, Yixuan; Bao, Yun; Yan, Xiumei; Huang, Zhijun; Xu, Peihu

2017-07-01

Graphene oxide (GO) modified with hyaluronic acid (HA) and Arg-gly-asp peptide (RGD) was designed as a dual-receptor targeting drug delivery system to enhance the specificity and efficiency of anticancer drug delivery. Firstly, GO-HA-RGD conjugate was characterized to reveal its structure and morphology. Whereafter, doxorubicin (Dox) as a model drug was loaded on GO-HA-RGD carrier, which displayed a high loading rate (72.9%, GO:Dox (w/w) = 1:1), pH-response and sustained drug release behavior. Cytotoxicity experiments showed that GO-HA-RGD possessed excellent biocompatibility towards SKOV-3 and HOSEpiC cells. Additionally, the GO-HA-RGD/Dox had a stronger cytotoxicity for SKOV-3 cells than either GO-HA/Dox (single receptor) or GO/Dox (no receptor). Moreover, celluar uptake studies illustrated that GO-HA-RGD conjugate could be effectively taken up by SKOV-3 cells via a synergic effect of CD44-HA and integrin-RGD mediated endocytosis. Hence, GO-HA-RGD nanocarrier is able to be a promising platform for targeted cancer therapeutic.

A bioactive implant in situ and long-term releases combined drugs for treatment of osteoarticular tuberculosis.

PubMed

Zhou, Chao-Xi; Li, Litao; Ma, Yi-Guang; Li, Bing-Nan; Li, Guang; Zhou, Zhihang; Shi, Feng; Weng, Jie; Zhang, Cong; Wang, Fenghua; Cui, Xu; Wang, Lei; Wang, Hao

2018-05-24

Anti-tuberculosis chemotherapy with a long duration and adequate dosing is the mainstay for treatment of osteoarticular tuberculosis (TB). However, it is difficult for systemic administration to reach adequate local drug concentrations and achieve effective treatment. Herein, a hydroxyapatite (HA) scaffold implant combined with a drug-releasing system was designed to achieve in situ and long-term anti-TB drug release and highly efficient therapeutic activity in vitro and in vivo. The clinical anti-TB drugs hydrophilic isoniazid (INH) and hydrophobic rifampicin (RFP) were molecularly dispersed into polyvinyl alcohol (PVA) through immersion-curing techniques and were steadily adhered onto the surfaces of HA scaffolds (HA-drug@PVA). The HA-drug@PVA scaffolds showed a long-term, sustained drug release profile and killed proliferating Mycobacteriumin vitro. In vivo experimental results revealed that the HA-drug@PVA scaffolds provided over 10- and 100-fold higher concentrations in muscles and bones, respectively, as well as a much lower concentration (<0.025) in blood. Furthermore, the HA-drug@PVA scaffold implanted in an osteoarticular TB rabbit model showed obvious bone regeneration and fusion due to the inhibition of TB-associated inflammatory changes. The excellent therapeutic effects indicate that in situ implant materials combined with a long-term drug release system are promising for the treatment of osteoarticular TB and other osteoarticular infections. Copyright © 2018. Published by Elsevier Ltd.

Influence of hyaluronic acid on bacterial and fungal species, including clinically relevant opportunistic pathogens.

PubMed

Ardizzoni, Andrea; Neglia, Rachele G; Baschieri, Maria C; Cermelli, Claudio; Caratozzolo, Manuela; Righi, Elena; Palmieri, Beniamino; Blasi, Elisabetta

2011-10-01

Hyaluronic acid (HA) has several clinical applications (aesthetic surgery, dermatology, orthopaedics and ophtalmology). Following recent evidence, suggesting antimicrobial and antiviral properties for HA, we investigated its effects on 15 ATCC strains, representative of clinically relevant bacterial and fungal species. The in vitro system employed allowed to assess optical density of broth cultures as a measure of microbial load in a time-dependent manner. The results showed that different microbial species and, sometimes, different strains belonging to the same species, are differently affected by HA. In particular, staphylococci, enterococci, Streptococcus mutans, two Escherichia coli strains, Pseudomonas aeruginosa, Candida glabrata and C. parapsilosis displayed a HA dose-dependent growth inhibition; no HA effects were detected in E. coli ATCC 13768 and C. albicans; S. sanguinis was favoured by the highest HA dose. Therefore, the influence of HA on bacteria and fungi warrants further studies aimed at better establishing its relevance in clinical applications.

[Effects of arbuscular mycorrhizal fungi on root system morphology and sucrose and glucose contents of Poncirus trifoliata].

PubMed

Zou, Ying-Ning; Wu, Qiang-Sheng; Li, Yan; Huang, Yong-Ming

2014-04-01

The effects of inoculation with Glomus mosseae, G. versiforme, and their mixture on plant growth, root system morphology, and sucrose and glucose contents of trifoliate orange (Poncirus trifoliata L.) were studied by pot culture. The results showed that all the inoculated treatments significantly increased the plant height, stem diameter, leaf number, and shoot and root biomass. In addition, the mycorrhizal treatments significantly increased the number of 1st, 2nd, and 3rd lateral roots. Inoculation with arbuscular mycorrhizal fungi significantly increased the root projected area, surface area, volume, and total root length (mainly 0-1 cm root length), but decreased the root average diameter. Meanwhile, G. versiforme showed the best effects. Mycorrhizal inoculation significantly increased the leaf sucrose and root glucose contents, but decreased the leaf glucose and root sucrose contents. Owing to the 'mycorrhizal carbon pool' in roots, inoculation with arbuscular mycorrhizal fungi resulted in high glucose content and low sucrose content of roots, which would facilitate the root growth and development, thereby the establishment of better root system morphology of host plants.

Construction of an unmanned aerial vehicle remote sensing system for crop monitoring

NASA Astrophysics Data System (ADS)

Jeong, Seungtaek; Ko, Jonghan; Kim, Mijeong; Kim, Jongkwon

2016-04-01

We constructed a lightweight unmanned aerial vehicle (UAV) remote sensing system and determined the ideal method for equipment setup, image acquisition, and image processing. Fields of rice paddy (Oryza sativa cv. Unkwang) grown under three different nitrogen (N) treatments of 0, 50, or 115 kg/ha were monitored at Chonnam National University, Gwangju, Republic of Korea, in 2013. A multispectral camera was used to acquire UAV images from the study site. Atmospheric correction of these images was completed using the empirical line method, and three-point (black, gray, and white) calibration boards were used as pseudo references. Evaluation of our corrected UAV-based remote sensing data revealed that correction efficiency and root mean square errors ranged from 0.77 to 0.95 and 0.01 to 0.05, respectively. The time series maps of simulated normalized difference vegetation index (NDVI) produced using the UAV images reproduced field variations of NDVI reasonably well, both within and between the different N treatments. We concluded that the UAV-based remote sensing technology utilized in this study is potentially an easy and simple way to quantitatively obtain reliable two-dimensional remote sensing information on crop growth.

The impact of cultivar diversity in bioenergy feedstock production systems on soil carbon sequestration rates

NASA Astrophysics Data System (ADS)

De Graaff, M.; Morris, G.; Jastrow, J. D.; SIX, J. W.

2013-12-01

Land-use change for bioenergy production can create greenhouse gas (GHG) emissions through disturbance of soil carbon (C) pools, but native species with extensive root systems may rapidly repay the GHG debt, particularly when grown in diverse mixtures, by enhancing soil C sequestration upon land-use change. Native bioenergy candidate species, switchgrass (Panicum virgatum L.) and big bluestem (Andropogon gerardii) show extensive within-species variation, and our preliminary data show that increased cultivar diversity can enhance yield. We aim to assess how shifting C3-dominated nonnative perennial grasslands to C4-dominated native perennial grasslands for use as bioenergy feedstock affects soil C stocks, and how within-species diversity in switchgrass and big bluestem affects soil C sequestration rates. Our experiment is conducted at the Fermilab National Environmental Research Park, and compares different approaches for perennial feedstock production ranging across a biodiversity gradient, where diversity is manipulated at both the species- and cultivar level, and nitrogen (N) is applied at two levels (0 and 67 kg/ha). Preliminary results indicate that switchgrass and big bluestem differentially affect soil C sequstration, and that increasing diversity may enhance soil C sequestration rates.

Greenhouse gas emissions and carbon sequestration by agroforestry systems in southeastern Brazil.

PubMed

Torres, Carlos Moreira Miquelino Eleto; Jacovine, Laércio Antônio Gonçalves; Nolasco de Olivera Neto, Sílvio; Fraisse, Clyde William; Soares, Carlos Pedro Boechat; de Castro Neto, Fernando; Ferreira, Lino Roberto; Zanuncio, José Cola; Lemes, Pedro Guilherme

2017-12-01

Agrosilvopastoral and silvopastoral systems can increase carbon sequestration, offset greenhouse gas (GHG) emissions and reduce the carbon footprint generated by animal production. The objective of this study was to estimate GHG emissions, the tree and grass aboveground biomass production and carbon storage in different agrosilvopastoral and silvopastoral systems in southeastern Brazil. The number of trees required to offset these emissions were also estimated. The GHG emissions were calculated based on pre-farm (e.g. agrochemical production, storage, and transportation), and on-farm activities (e.g. fertilization and machinery operation). Aboveground tree grass biomass and carbon storage in all systems was estimated with allometric equations. GHG emissions from the agroforestry systems ranged from 2.81 to 7.98 t CO 2 e ha -1 . Carbon storage in the aboveground trees and grass biomass were 54.6, 11.4, 25.7 and 5.9 t C ha -1 , and 3.3, 3.6, 3.8 and 3.3 t C ha -1 for systems 1, 2, 3 and 4, respectively. The number of trees necessary to offset the emissions ranged from 17 to 44 trees ha -1 , which was lower than the total planted in the systems. Agroforestry systems sequester CO 2 from the atmosphere and can help the GHG emission-reduction policy of the Brazilian government.

Canal Transportation, Unprepared Areas, and Dentin Removal after Preparation with BT-RaCe and ProTaper Next Systems.

PubMed

Brasil, Sabrina C; Marceliano-Alves, Marília F; Marques, Márcia L; Grillo, João P; Lacerda, Mariane F L S; Alves, Flávio R F; Siqueira, José F; Provenzano, José C

2017-10-01

This study compared the shaping ability of ProTaper Next (Dentsply Sirona, Tulsa, OK) and BT-RaCe (FKG Dentaire, La Chaux-de-Fonds, Switzerland) instrument systems in the mesial canals of mandibular molars using micro-computed tomographic (micro-CT) imaging. A total of 17 type IV mesial roots of extracted first mandibular molars were scanned using micro-CT imaging before and after root canal preparation with the 2 instrument systems. Both systems were used in the same root but alternating the mesial canals from root to root. The following parameters were analyzed: root canal volume, surface area, unprepared surface areas, transportation, canal/root width ratio, and preparation time. There were no statistically significant differences between the 2 systems for all evaluated parameters (P > .05). The unprepared surface areas for the full canal length and the apical 5-mm segment were 33% and 14% for BT-RaCe and 31% and 14% for ProTaper Next, respectively. After preparation, all root canals had a diameter that was not larger than 35% of the root diameter at the coronal and middle segments. The 2 systems showed no differences in any of the evaluated shaping parameters. None of the tested systems put the roots at risk of fracture because of excessive dentin removal. Copyright © 2017 American Association of Endodontists. Published by Elsevier Inc. All rights reserved.

Nitrogen Fertilization Effects on Productivity and Nitrogen Loss in Three Grass-Based Perennial Bioenergy Cropping Systems

DOE PAGES

Duran, Brianna E. L.; Duncan, David S.; Oates, Lawrence G.; ...

2016-03-18

Nitrogen (N) fertilization can greatly improve plant productivity but needs to be carefully managed to avoid harmful environmental impacts. Nutrient management guidelines aimed at reducing harmful forms of N loss such as nitrous oxide (N 2O) emissions and nitrate (NO 3 -) leaching have been tailored for many cropping systems. The developing bioenergy industry is likely to make use of novel cropping systems, such as polycultures of perennial species, for which we have limited nutrient management experience. We studied how a switchgrass (Panicum virgatum) monoculture, a 5-species native grass mixture and an 18- species restored prairie responded to annual fertilizermore » applications of 56 kg N ha -1 in a fieldscale agronomic trial in south-central Wisconsin over a 2-year period.We observed greater fertilizer-induced N 2O emissions and sub-rooting zone NO 3 - concentrations in the switchgrass monoculture than in either polyculture. Fertilization increased aboveground net primary productivity in the polycultures, but not in the switchgrass monoculture. Switchgrass was generally more productive, while the two polycultures did not differ from each other in productivity or N loss. In conclusion, our results highlight differences between polycultures and a switchgrass monoculture in responding to N fertilization.« less

Nutrient cycling associated with the seagrass Halophila ovalis in the Swan-Canning Estuary based on seasonal variations in biomass and tissue nutrients

NASA Astrophysics Data System (ADS)

Connell, E. L.; Walker, D. I.

2001-09-01

Halophila ovalis occupies about 20% (461 ha) of the Swan-Canning Estuary. To assess the role of this plant in the biogeochemical cycling of the estuary, its biomass, nutrient dynamics and oxygen release from its roots to the sediment were investigated. This paper describes a conceptual model developed to extrapolate these findings to the whole estuary.The model follows changes in H. ovalis meadows in the Swan-Canning Estuary on a seasonal basis over an annual cycle. Total maximum seagrass biomass was estimated as 346 t dry weight (DW) in summer, declining in winter. In spring, although H. ovalis biomass did not increase, tissue nutrient concentrations were higher when external nutrient concentrations were high. From spring to summer, when external nutrient concentrations in the water column were severely depleted, shoot to root-rhizome biomass ratios changed from 1 : 1 in winter to 1 : 1·5 in summer. Plant tissue nutrients also decreased in root-rhizomes and increased in shoots, indicating an allocation of internal nutrient resources to the shoots for growth. Despite depletion of nitrogen in the water column, ammonium was still available in the sediment. Ammonium concentrations in the sediment porewater decreased in summer, suggesting H. ovalis meadows were a sink for ammonium. With an increase in biomass in summer, including the density of roots, oxygen release from H. ovalis roots subsequently increased. H. ovalis meadows act as a substantial sink for nutrients in the Swan-Canning Estuary in spring and summer. In winter, when there are large losses of plant biomass, H. ovalis meadows become a source of nutrients to the estuary.

Nano-hydroxyapatite/chitosan-starch nanocomposite as a novel bone construct: Synthesis and in vitro studies.

PubMed

Shakir, Mohammad; Jolly, Reshma; Khan, Mohd Shoeb; Iram, Noor e; Khan, Haris M

2015-09-01

A novel ternary nanocomposite system incorporating hydroxyapatite, chitosan and starch (n-HA/CS-ST) has been synthesized by co-precipitation method at room temperature, addressing the issues of biocompatibility, mechanical strength and cytotoxicity required for bone tissue engineering. The interactions, crystallite size, surface morphology and thermal stability against n-HA/CS nanocomposite have been obtained by comparing the results of FTIR, SEM, TEM, DLS, XRD and TGA/DTA. A comparative study of bioactivity and thermal stability of n-HA/CS and n-HA/CS-ST nanocomposites revealed that the incorporation of starch as templating agent enhanced these properties in n-HA/CS-ST nanocomposite. A lower swelling rate of n-HA/CS-ST relative to n-HA/CS indicates a higher mechanical strength supportive of bone tissue ingrowths. The MTT assay on murine fibroblast L929 and human osteoblasts-like MG-63 cells and in vitro bioactivity of n-HA/CS-ST matrix referred superior non-toxic nature of n-HA/CS-ST nanocomposite and greater possibility of osteointegration in vivo respectively. Furthermore n-HA/CS-ST exhibited improved antibacterial property against both Gram-positive and Gram-negative bacteria relative to n-HA/CS. Copyright © 2015. Published by Elsevier B.V.

Released fraction of polychlorinated biphenyls from soil-biosolid system using a leaching procedure and its comparison with bioavailable fraction determined by wheat plant uptake.

PubMed

Jachero, Lourdes; Leiva, Claudio; Ahumada, Inés; Richter, Pablo

2017-11-01

The bioavailability of polychlorinated biphenyls (PCBs) in soils amended with biosolids was estimated using an aqueous leaching process of the compounds combined with rotating disk sorptive extraction (RDSE), and compared with bioavailability determined through of PCB absorption in wheat plants growing in the same soil-biosolid matrix. The matrices consisted of soil amended with biosolids at doses of 30, 90, and 200 Mg/ha, which increase concomitantly the organic matter content of the matrix. Considering that PCBs were natively absent in both the biosolids and soil used, the compounds were spiked in the biosolids and aged for 10 days. For each biosolid dose, the aqueous leaching profile was studied and equilibrium time was calculated to be 33 h. The leaching fractions determined by RDSE, considering total PCBs studied, were 12, 7, and 6% and the bioavailable fractions absorbed by the wheat root were found to be 0.5, 0.3, and 0.2% for 30, 90, and 200 Mg/ha doses, respectively. Both fractions leachable and bioavailable decrease with both increasing hydrophobicity of the compound (Kow) and increasing in the biosolid dose. It was found that both fractions (leaching and bioavailable) correlated according to the bivariate least squares regression, represented by a coefficient of correlation of 0.86. Therefore, the application of the chemical method involving a leaching procedure is an alternative to estimate the bioavailable fraction of PCBs in wheat plants in a simpler and in a shorter time.

Root architecture impacts on root decomposition rates in switchgrass

NASA Astrophysics Data System (ADS)

de Graaff, M.; Schadt, C.; Garten, C. T.; Jastrow, J. D.; Phillips, J.; Wullschleger, S. D.

2010-12-01

Roots strongly contribute to soil organic carbon accrual, but the rate of soil carbon input via root litter decomposition is still uncertain. Root systems are built up of roots with a variety of different diameter size classes, ranging from very fine to very coarse roots. Since fine roots have low C:N ratios and coarse roots have high C:N ratios, root systems are heterogeneous in quality, spanning a range of different C:N ratios. Litter decomposition rates are generally well predicted by litter C:N ratios, thus decomposition of roots may be controlled by the relative abundance of fine versus coarse roots. With this study we asked how root architecture (i.e. the relative abundance of fine versus coarse roots) affects the decomposition of roots systems in the biofuels crop switchgrass (Panicum virgatum L.). To understand how root architecture affects root decomposition rates, we collected roots from eight switchgrass cultivars (Alamo, Kanlow, Carthage, Cave-in-Rock, Forestburg, Southlow, Sunburst, Blackwell), grown at FermiLab (IL), by taking 4.8-cm diameter soil cores from on top of the crown and directly next to the crown of individual plants. Roots were carefully excised from the cores by washing and analyzed for root diameter size class distribution using WinRhizo. Subsequently, root systems of each of the plants (4 replicates per cultivar) were separated in 'fine' (0-0.5 mm), 'medium' (0.5-1 mm) and 'coarse' roots (1-2.5 mm), dried, cut into 0.5 cm (medium and coarse roots) and 2 mm pieces (fine roots), and incubated for 90 days. For each of the cultivars we established five root-treatments: 20g of soil was amended with 0.2g of (1) fine roots, (2) medium roots, (3) coarse roots, (4) a 1:1:1 mixture of fine, medium and coarse roots, and (5) a mixture combining fine, medium and coarse roots in realistic proportions. We measured CO2 respiration at days 1, 3, 7, 15, 30, 60 and 90 during the experiment. The 13C signature of the soil was -26‰, and the 13C signature of plants was -12‰, enabling us to differentiate between root-derived C and native SOM-C respiration. We found that the relative abundance of fine, medium and coarse roots were significantly different among cultivars. Root systems of Alamo, Kanlow and Cave-in-Rock were characterized by a large abundance of coarse-, relative to fine roots, whereas Carthage, Forestburg and Blackwell had a large abundance of fine, relative to coarse roots. Fine roots had a 28% lower C:N ratio than medium and coarse roots. These differences led to different root decomposition rates. We conclude that root architecture should be taken into account when predicting root decomposition rates; enhanced understanding of the mechanisms of root decomposition will improve model predictions of C input to soil organic matter.

Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems.

PubMed

Lynch, Jonathan P

2013-07-01

A hypothetical ideotype is presented to optimize water and N acquisition by maize root systems. The overall premise is that soil resource acquisition is optimized by the coincidence of root foraging and resource availability in time and space. Since water and nitrate enter deeper soil strata over time and are initially depleted in surface soil strata, root systems with rapid exploitation of deep soil would optimize water and N capture in most maize production environments. • THE IDEOTYPE: Specific phenes that may contribute to rooting depth in maize include (a) a large diameter primary root with few but long laterals and tolerance of cold soil temperatures, (b) many seminal roots with shallow growth angles, small diameter, many laterals, and long root hairs, or as an alternative, an intermediate number of seminal roots with steep growth angles, large diameter, and few laterals coupled with abundant lateral branching of the initial crown roots, (c) an intermediate number of crown roots with steep growth angles, and few but long laterals, (d) one whorl of brace roots of high occupancy, having a growth angle that is slightly shallower than the growth angle for crown roots, with few but long laterals, (e) low cortical respiratory burden created by abundant cortical aerenchyma, large cortical cell size, an optimal number of cells per cortical file, and accelerated cortical senescence, (f) unresponsiveness of lateral branching to localized resource availability, and (g) low K(m) and high Vmax for nitrate uptake. Some elements of this ideotype have experimental support, others are hypothetical. Despite differences in N distribution between low-input and commercial maize production, this ideotype is applicable to low-input systems because of the importance of deep rooting for water acquisition. Many features of this ideotype are relevant to other cereal root systems and more generally to root systems of dicotyledonous crops.

DigR: a generic model and its open source simulation software to mimic three-dimensional root-system architecture diversity.

PubMed

Barczi, Jean-François; Rey, Hervé; Griffon, Sébastien; Jourdan, Christophe

2018-04-18

Many studies exist in the literature dealing with mathematical representations of root systems, categorized, for example, as pure structure description, partial derivative equations or functional-structural plant models. However, in these studies, root architecture modelling has seldom been carried out at the organ level with the inclusion of environmental influences that can be integrated into a whole plant characterization. We have conducted a multidisciplinary study on root systems including field observations, architectural analysis, and formal and mathematical modelling. This integrative and coherent approach leads to a generic model (DigR) and its software simulator. Architecture analysis applied to root systems helps at root type classification and architectural unit design for each species. Roots belonging to a particular type share dynamic and morphological characteristics which consist of topological and geometric features. The DigR simulator is integrated into the Xplo environment, with a user interface to input parameter values and make output ready for dynamic 3-D visualization, statistical analysis and saving to standard formats. DigR is simulated in a quasi-parallel computing algorithm and may be used either as a standalone tool or integrated into other simulation platforms. The software is open-source and free to download at http://amapstudio.cirad.fr/soft/xplo/download. DigR is based on three key points: (1) a root-system architectural analysis, (2) root type classification and modelling and (3) a restricted set of 23 root type parameters with flexible values indexed in terms of root position. Genericity and botanical accuracy of the model is demonstrated for growth, branching, mortality and reiteration processes, and for different root architectures. Plugin examples demonstrate the model's versatility at simulating plastic responses to environmental constraints. Outputs of the model include diverse root system structures such as tap-root, fasciculate, tuberous, nodulated and clustered root systems. DigR is based on plant architecture analysis which leads to specific root type classification and organization that are directly linked to field measurements. The open source simulator of the model has been included within a friendly user environment. DigR accuracy and versatility are demonstrated for growth simulations of complex root systems for both annual and perennial plants.

Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform1[C][W][OA

PubMed Central

Clark, Randy T.; MacCurdy, Robert B.; Jung, Janelle K.; Shaff, Jon E.; McCouch, Susan R.; Aneshansley, Daniel J.; Kochian, Leon V.

2011-01-01

A novel imaging and software platform was developed for the high-throughput phenotyping of three-dimensional root traits during seedling development. To demonstrate the platform’s capacity, plants of two rice (Oryza sativa) genotypes, Azucena and IR64, were grown in a transparent gellan gum system and imaged daily for 10 d. Rotational image sequences consisting of 40 two-dimensional images were captured using an optically corrected digital imaging system. Three-dimensional root reconstructions were generated and analyzed using a custom-designed software, RootReader3D. Using the automated and interactive capabilities of RootReader3D, five rice root types were classified and 27 phenotypic root traits were measured to characterize these two genotypes. Where possible, measurements from the three-dimensional platform were validated and were highly correlated with conventional two-dimensional measurements. When comparing gellan gum-grown plants with those grown under hydroponic and sand culture, significant differences were detected in morphological root traits (P < 0.05). This highly flexible platform provides the capacity to measure root traits with a high degree of spatial and temporal resolution and will facilitate novel investigations into the development of entire root systems or selected components of root systems. In combination with the extensive genetic resources that are now available, this platform will be a powerful resource to further explore the molecular and genetic determinants of root system architecture. PMID:21454799

Formulation of humic-based soil conditioners

NASA Astrophysics Data System (ADS)

Amanova, M. A.; Mamytova, G. A.; Mamytova, B. A.; Kydralieva, K. A.; Jorobekova, Sh. J.

2009-04-01

The goal of the study is to prepare soil conditioners (SC) able to carry out the following functions: (i) the chemical conditioning of soil mainly comprising the adjustment of pH, (ii) the balancing of inorganic nutrients, (iii) the physical conditioning of soil mainly comprising the improvement of water permeability, air permeability and water retention properties, and (iv) improvement of the ecological system concerning of useful microorganisms activity in the soil. The SC was made of a mixture of inorganic ingredients, a chemical composition and physical and chemical properties of which promoted improvement of physical characteristic of soil and enrichment by its mineral nutritious elements. In addition to aforesaid ingredients, this soil conditioner contains agronomical-valued groups of microorganisms having the function promoting the growth of the crop. As organic component of SC humic acids (HA) was used. HA serve many major functions that result in better soil and plant health. In soil, HA can increase microbial and mycorrhizal activity while enhancing nutrient uptake by plant roots. HA work as a catalyst by stimulating root and plant growth, it may enhance enzymatic activity that in turn accelerates cell division which can lead to increased yields. HA can help to increase crop yields, seed germination, and much more. In short, humic acids helps keep healthy plants health. The first stage goal was to evaluate mineral and organic ingredients for formulation of SC. Soil conditioners assessed included ash and slag. The use of slags has been largelly used in agriculture as a source of lime and phosphoric acid. The silicic acid of slags reduces Al-acitivity thus, promoting a better assimilation of P-fertilizer by plants. Additionally, silicic acid is also known to improve soil moisture capacity, thus enhancing soil water availability to plants. Physico-chemical characteristics of ash and slag were determined, as a total - about 20 samples. Results include: Chemical composition of (i) ash: 53-54% SiO2; 26-27% Al2O3; 3-5% Fe2O3; 1.7-2.9% CaO; 1.3-2.3% MgO; 0.5-0.8% Na2O; 1.0-1.5% K2O and; (ii), slag: 17-20% SiO2; 15-20% Al2O3; 30-40% CaO; 1-6% Fe2O3; 4-11% MgO. Of all samples assessed, per 5 samples from various regions with various compositions (high, average and low content of metal oxides) were selected and tested as component of SC in vegetative pot and field experiments, i.e., to study the immobilization processes including microorganisms and inorganic ingredients. This study helped to elucidate the influence of ash and slag composition on microbial development. The next stage was (i) to evaluate microbial activity of selected soils from Kyrgyzstan, (ii) to isolate microorganisms exhibiting antagonistic activity against pathogenic microorganisms present in the soil and, (iii) to utilize microbes as nutrient sources. Candidate microbial cultures were isolated from soils/crops and assessed as plant growth promoting microorganisms. The characteristics of the physiological groups of microorganisms were also investigated. Of different physiological groups of microorganisms selected, ca, 3 consortia of agronomical-valued microbial groups from undisturbed soils was selected as component of soil conditioners. Microorganisms, namely oligonitrophils, ammonifiers, nitrifiers, were tested based on beneficial bioactivity including plant biomass and stem length on commercial onion and lettuce crops. Our results demonstrate that all the combinations ash/slag, humic acids and consortium of beneficial agronomical-valued microbial groups into one environmentally friendly soil conditioner possessed equal or higher growth-promoting potential in relation to lettuce. However, our results demonstrated clearly that among studied scope of soil conditioners only one of them could be recommended for further study in terms of practical applications. Namely, it was mixture consisting of humic acids, ash and oligonitrophils as soil conditioning agent. Acknowledgement. This research was supported by the grant of ISTC KR-993.2.

Nursery Cultural Practices and Morphological Arrtibutes of Longleaf Pine Bare-Root Stock as Indicators of Early Field Performance

Treesearch

Glyndon E. Hatchell; H. David Muse

1990-01-01

Longleaf pine seedlings performed satisfactorily after planting on deep sands in South Carolina in dry years when: (1) They were vertically root-pruned in the nursery. (2) They had 14 or more first-order lateral roots and nonfibrous root systems. (3) They had six or more first-order lateral roots and highly fibrous root systems.

Assessment of nitrous oxide and methane emissions for California agriculture

NASA Astrophysics Data System (ADS)

Horwath, W. R.; Burger, M.; Assa, Y.; Wilson, T. J.

2012-12-01

The California Global Warming Solutions Act of 2006 (AB 32) mandates comprehensive strategies to reduce nitrous oxide (N2O) and methane (CH4) emissions. In agriculture crop production, sources of N2O are related to nitrogen fertilization while CH4 emission is associated with rice production. More than half the GHG emissions from agriculture are attributed to N2O production. Currently, baseline N2O emission data for most cropping systems in the State is lacking. Estimates of CH4 emission in rice have been established from previous studies, but a lack of information exists for its expansion into the San Joaquin Delta to address subsidence issues. The paucity of N2O emission data has hampered biogeochemical modeling efforts. The objectives of this assessment are to (1) measure annual N2O and CH4 emissions for major California crops (vineyards, almonds, tomato, wheat, alfalfa, lettuce, and rice) under typical management practices, (2) characterize the effects of environmental factors on the temporal profile of N2O and CH4 emissions, and (3) determine N2O emission factors. The growth of rice in Delta peat soils produced highly variable CH4 emissions depending on tillage intensity. In 2010, standard tillage produced 184 kg CH4-C/ha while in 2011 after deep plowing placing rice residue deeper into the soil, only 26 kg CH4-C/ha was observed. In processing tomato systems, an average 2.5 kg N2O-N/ha was emitted with standard fertilization (160 kg N / ha), similar to background emissions and those from a drip irrigated system, while 4.0 to 5.8 kg N2O-N /ha y-1 was emitted at fertilizer rates of 225 and 300 kg N /ha (see Fig. 1 for example of temporal sources of emissions). About half the annual emissions were emitted within 3 d after the first seasonal rainfall event. In other tomato studies, estimated losses of fertilizer N as N2O were 0.38 ± 0.03 kg/ha y-1 in a drip irrigated system and 1.79 ± 0.21 kg/ha y-1 in furrow irrigated system, which was equivalent to 0.19% and 0.73% of the added fertilizer, respectively. In a lettuce production system, annual N2O emissions were about 1 kg N2O-N /ha y-1. In a wheat system, emissions during the growing season in the rainy season were between 1.0 and 1.5 kg N2O-N, with highest emissions occurring after anhydrous ammonium applications. Older alfalfa fields were larger sources of N2O. This two-year dataset will serve as the basis for developing mitigation practices.igure 1. Nitrous oxide emissions in tomato systems in 2009/10 during the rainy season, between starter and sidedress application of fertilizers, during the growing season and after the first rainfall after harvest.

Developing landscape habitat models for rare amphibians with small geographic ranges: a case study of Siskiyou Mountains salamanders in the western USA

Treesearch

Nobuya Suzuki; Deanna H. Olson; Edward C. Reilly

2007-01-01

To advance the development of conservation planning for rare species with small geographic ranges, we determined habitat associations of Siskiyou Mountains salamanders (Plethodon stormi) and developed habitat suitability models at fine (10 ha), medium (40 ha), and broad (202 ha) spatial scales using available geographic information systems data and...

Extended state observer-based motion synchronisation control for hybrid actuation system of large civil aircraft

NASA Astrophysics Data System (ADS)

Wang, Xingjian; Shi, Cun; Wang, Shaoping

2017-07-01

Hybrid actuation system with dissimilar redundant actuators, which is composed of a hydraulic actuator (HA) and an electro-hydrostatic actuator (EHA), has been applied on modern civil aircraft to improve the reliability. However, the force fighting problem arises due to different dynamic performances between HA and EHA. This paper proposes an extended state observer (ESO)-based motion synchronisation control method. To cope with the problem of unavailability of the state signals, the well-designed ESO is utilised to observe the HA and EHA state variables which are unmeasured. In particular, the extended state of ESO can estimate the lumped effect of the unknown external disturbances acting on the control surface, the nonlinear dynamics, uncertainties, and the coupling term between HA and EHA. Based on the observed states of ESO, motion synchronisation controllers are presented to make HA and EHA to simultaneously track the desired motion trajectories, which are generated by a trajectory generator. Additionally, the unknown disturbances and the coupling terms can be compensated by using the extended state of the proposed ESO. Finally, comparative simulation results indicate that the proposed ESO-based motion synchronisation controller can achieve great force fighting reduction between HA and EHA.

Eu(III) uptake on rectorite in the presence of humic acid: a macroscopic and spectroscopic study.

PubMed

Chen, Changlun; Yang, Xin; Wei, Juan; Tan, Xiaoli; Wang, Xiangke

2013-03-01

This work contributed to the comprehension of humic acid (HA) effect on Eu(III) uptake to Na-rectorite by batch sorption experiments, model fitting, scanning electron microscopy, powder X-ray diffraction, Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, and extended X-ray absorption fine structure (EXAFS) spectroscopy. At low pH, the presence of HA enhanced Eu(III) sorption on Na-rectorite, while reduced Eu(III) sorption at high pH. The experimental data of Eu(III) sorption in the absence and presence of HA were simulated by the diffuse-layer model well with the aid of FITEQL 3.2 software. The basal spacing of rectorite became large after Eu(III) and HA sorption on Na-rectorite. Some of Eu(III) ions and HA might be intercalated into the interlayer space of Na-rectorite. EXAFS analysis showed that the R(Eu-O) (the bond distance of Eu and O in the first shell of Eu) and N values (coordination number) of Eu(III)-HA-rectorite system were smaller than those of Eu(III)-rectorite system. Copyright © 2012 Elsevier Inc. All rights reserved.

GiA Roots: software for the high throughput analysis of plant root system architecture.

PubMed

Galkovskyi, Taras; Mileyko, Yuriy; Bucksch, Alexander; Moore, Brad; Symonova, Olga; Price, Charles A; Topp, Christopher N; Iyer-Pascuzzi, Anjali S; Zurek, Paul R; Fang, Suqin; Harer, John; Benfey, Philip N; Weitz, Joshua S

2012-07-26

Characterizing root system architecture (RSA) is essential to understanding the development and function of vascular plants. Identifying RSA-associated genes also represents an underexplored opportunity for crop improvement. Software tools are needed to accelerate the pace at which quantitative traits of RSA are estimated from images of root networks. We have developed GiA Roots (General Image Analysis of Roots), a semi-automated software tool designed specifically for the high-throughput analysis of root system images. GiA Roots includes user-assisted algorithms to distinguish root from background and a fully automated pipeline that extracts dozens of root system phenotypes. Quantitative information on each phenotype, along with intermediate steps for full reproducibility, is returned to the end-user for downstream analysis. GiA Roots has a GUI front end and a command-line interface for interweaving the software into large-scale workflows. GiA Roots can also be extended to estimate novel phenotypes specified by the end-user. We demonstrate the use of GiA Roots on a set of 2393 images of rice roots representing 12 genotypes from the species Oryza sativa. We validate trait measurements against prior analyses of this image set that demonstrated that RSA traits are likely heritable and associated with genotypic differences. Moreover, we demonstrate that GiA Roots is extensible and an end-user can add functionality so that GiA Roots can estimate novel RSA traits. In summary, we show that the software can function as an efficient tool as part of a workflow to move from large numbers of root images to downstream analysis.

Technological advances in endodontics: treatment of a mandibular molar with internal root resorption using a reciprocating single-file system.

PubMed

de Souza, Samir Noronha; Marques, André Augusto Franco; Sponchiado-Júnior, EmÍlio Carlos; Roberti Garcia, Lucas da Fonseca; da Frota, Matheus Franco; de Carvalho, Fredson Márcio Acris

2017-01-01

The field of endodontics has become increasingly successful due to technological advances that allow clinicians to solve clinical cases that would have been problematic a few years ago. Despite such advances, endodontic treatment of teeth with internal root resorption remains challenging. This article presents a clinical case in which a reciprocating single-file system was used for endodontic treatment of a mandibular molar with internal root resorption. Radiographic examination revealed the presence of internal root resorption in the distobuccal root canal of the mandibular right first molar. A reciprocating single-file system was used for root canal instrumentation and final preparation, and filling was obtained through a thermal compaction technique. No painful symptoms or periapical lesions were observed in 12 months of follow-up. The results indicate that a reciprocating single-file system is an adequate alternative for root canal instrumentation, particularly in teeth with internal root resorption.

The potential of agricultural practices to increase C storage in cropped soils: an assessment for France

NASA Astrophysics Data System (ADS)

Chenu, Claire; Angers, Denis; Métay, Aurélie; Colnenne, Caroline; Klumpp, Katja; Bamière, Laure; Pardon, Lenaic; Pellerin, Sylvain

2014-05-01

Though large progress has been achieved in the last decades, net GHG emissions from the agricultural sector are still more poorly quantified than in other sectors. In this study, we examined i) technical mitigation options likely to store carbon in agricultural soils, ii) their potential of additional C storage per unit surface area and iii) applicable areas in mainland France. We considered only agricultural practices being technically feasible by farmers and involving no major change in either production systems or production levels. Moreover, only currently available techniques with validated efficiencies and presenting no major negative environmental impacts were taken into account. Four measures were expected to store additional C in agricultural soils: - Reducing tillage: either a switch to continuous direct seeding, direct seeding with occasional tillage once every five years, or continuous superficial (<15 cm) tillage. - Introducing cover crops in cropping systems: sown between two cash crops on arable farms, in orchards and vineyards (permanent or temporary cover cropping) . - Expanding agroforestry systems; planting of tree lines in cultivated fields and grasslands, and hedges around the field edges. - Increasing the life time of temporary sown grasslands: increase of life time to 5 years. The recent literature was reviewed in order to determine long term (>20yrs) C storage rates (MgC ha-1 y-1,) of cropping systems with and without the proposed practice. Then we analysed the conditions for potential application, in terms of feasibility, acceptance, limitation of yield losses and of other GHG emissions. According to the literature, additional C storage rates were 0.15 (0-0.3) MgC ha-1 y-1 for continuous direct seeding, 0.10 (0-0.2) MgC ha-1 y-1for occasional tillage one year in five, and 0.0 MgC ha-1 y-1 for superficial tillage. Cover crops were estimated to store 0.24 (0.13-0.37) MgC ha-1 y-1 between cash crops and 0.49 (0.23-0.72) MgC ha-1 y-1 when associated with vineyards. Hedges (i.e 60 m ha-1) stored 0.15 (0.05-0.26) Mg C ha-1 y-1. Very few estimates were available for temperate agroforestry system, and we proposed a value of 1.01 (0.11-1.36) Mg C ha-1 y-1for C stored in soil and in the tree biomass for systems comprising 30-50 trees ha-1. Increasing the life time of temporary sown grassland increased C stocls by 0.11 (0.07-0.22) Mg C ha-1 y-1. In general, practices with increased C inputs to soil through additional plant biomass (agroforestry, hedges and cover crops) resulted in higher additional C storage rates, while the reduction of soil organic matter mineralisation through reduced tillage seemed less effective. When applied to the French agricultural sector, excluding areas with soils with major technical constraints or negative environmental consequences (e.g. poorly aerated soils with high N2O emissions), the measures considered here allowed to increase French soil C stocks by 0 to more than 1 Tg C y-1. However, our estimates are associated with high uncertainties, due to the high variability in soil C storage associated with pedo-climatic conditions and cropping systems, and on the very few studies available for some practices such as agroforestry under temperate conditions.

Water availability determines the richness and density of fig trees within Brazilian semideciduous forest landscapes

NASA Astrophysics Data System (ADS)

Coelho, Luís Francisco Mello; Ribeiro, Milton Cezar; Pereira, Rodrigo Augusto Santinelo

2014-05-01

The success of fig trees in tropical ecosystems is evidenced by the great diversity (+750 species) and wide geographic distribution of the genus. We assessed the contribution of environmental variables on the species richness and density of fig trees in fragments of seasonal semideciduous forest (SSF) in Brazil. We assessed 20 forest fragments in three regions in Sao Paulo State, Brazil. Fig tree richness and density was estimated in rectangular plots, comprising 31.4 ha sampled. Both richness and fig tree density were linearly modeled as function of variables representing (1) fragment metrics, (2) forest structure, and (3) landscape metrics expressing water drainage in the fragments. Model selection was performed by comparing the AIC values (Akaike Information Criterion) and the relative weight of each model (wAIC). Both species richness and fig tree density were better explained by the water availability in the fragment (meter of streams/ha): wAICrichness = 0.45, wAICdensity = 0.96. The remaining variables related to anthropic perturbation and forest structure were of little weight in the models. The rainfall seasonality in SSF seems to select for both establishment strategies and morphological adaptations in the hemiepiphytic fig tree species. In the studied SSF, hemiepiphytes established at lower heights in their host trees than reported for fig trees in evergreen rainforests. Some hemiepiphytic fig species evolved superficial roots extending up to 100 m from their trunks, resulting in hectare-scale root zones that allow them to efficiently forage water and soil nutrients. The community of fig trees was robust to variation in forest structure and conservation level of SSF fragments, making this group of plants an important element for the functioning of seasonal tropical forests.

Plant responses to a phytomanaged urban technosol contaminated by trace elements and polycyclic aromatic hydrocarbons.

PubMed

Marchand, Lilian; Sabaris, Celestino-Quintela; Desjardins, Dominic; Oustrière, Nadège; Pesme, Eric; Butin, Damien; Wicart, Gaetan; Mench, Michel

2016-02-01

Medicago sativa was cultivated at a former harbor facility near Bordeaux (France) to phytomanage a soil contaminated by trace elements (TE) and polycyclic aromatic hydrocarbons (PAH). In parallel, a biotest with Phaseolus vulgaris was carried out on potted soils from 18 sub-sites to assess their phytotoxicity. Total soil TE and PAH concentrations, TE concentrations in the soil pore water, the foliar ionome of M. sativa (at the end of the first growth season) and of Populus nigra growing in situ, the root and shoot biomass and the foliar ionome of P. vulgaris were determined. Despite high total soil TE, soluble TE concentrations were generally low, mainly due to alkaline soil pH (7.8-8.6). Shoot dry weight (DW) yield and foliar ionome of P. vulgaris did not reflect the soil contamination, but its root DW yield decreased at highest soil TE and/or PAH concentrations. Foliar ionomes of M. sativa and P. nigra growing in situ were generally similar to the ones at uncontaminated sites. M. sativa contributed to bioavailable TE stripping by shoot removal (in g ha(-1) harvest(-1)): As 0.9, Cd 0.3, Cr 0.4, Cu 16.1, Ni 2.6, Pb 4, and Zn 134. After 1 year, 72 plant species were identified in the plant community across three subsets: (I) plant community developed on bare soil sowed with M. sativa; (II) plant community developed in unharvested plots dominated by grasses; and (III) plant community developed on unsowed bare soil. The shoot DW yield (in mg ha(-1) harvest(-1)) varied from 1.1 (subset I) to 6.9 (subset II). For subset III, the specific richness was the lowest in plots with the highest phytotoxicity for P. vulgaris.

Soil-test N recommendations augmented with PEST-optimized RZWQM simulations

USGS Publications Warehouse

Malone, R.W.; Jaynes, D.B.; Ma, Liwang; Nolan, B.T.; Meek, D.W.; Karlen, D.L.

2010-01-01

Improved understanding of year-to-year late-spring soil nitrate test (LSNT) variability could help make it more attractive to producers. We test the ability of the Root Zone Water Quality Model (RZWQM) to simulate watershed-scale variability due to the LSNT, and we use the optimized model to simulate long-term field N dynamics under related conditions. Autoregressive techniques and the automatic parameter calibration program PEST were used to show that RZWQM simulates significantly lower nitrate concentration in discharge from LSNT treatments compared with areas receiving fall N fertilizer applications within the tile-drained Walnut Creek, Iowa, watershed (>5 mg N L-1 difference for the third year of the treatment, 1999). This result is similar to field-measured data from a paired watershed experiment. A statistical model we developed using RZWQM simulations from 1970 to 2005 shows that early-season precipitation and early-season temperature account for 90% of the interannual variation in LSNT-based fertilizer N rates. Long-term simulations with similar average N application rates for corn (Zea mays L.) (151 kg N ha-1) show annual average N loss in tile flow of 20.4, 22.2, and 27.3 kg N ha -1 for LSNT, single spring, and single fall N applications. These results suggest that (i) RZWQM is a promising tool to accurately estimate the water quality effects of LSNT; (ii) the majority of N loss difference between LSNT and fall applications is because more N remains in the root zone for crop uptake; and (iii) year-to-year LSNT-based N rate differences are mainly due to variation in early-season precipitation and temperature. Copyright ?? 2010 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Morphological evaluation of maxillary second molars with fused roots: a micro-CT study.

PubMed

Ordinola-Zapata, R; Martins, J N R; Bramante, C M; Villas-Boas, M H; Duarte, M H; Versiani, M A

2017-12-01

To evaluate the internal and external morphologies of fused-rooted maxillary second molars by means of micro-computed tomography (micro-CT) analysis. A total of 100 fused-rooted maxillary second molars from a Brazilian subpopulation were divided into six groups according to the root morphology. The samples were scanned at a resolution of 19.6 μm and evaluated with regard to the external morphology of the roots, the root canal configuration, the percentage frequency of C-shaped canals and isthmuses, as well as the morphology of the root canal system at 1, 2 and 3 mm from the anatomical apex of the fused roots. The most prevalent root canal fusions were type 1, mesiobuccal root fused with distobuccal root (32%), followed by type 3, DB root fused with P root (27%), and type 4, MB root fused with DB root, and P root fused with MB or DB roots (21%). The prevalence of C-shaped root canal systems were 22%. Depending on the type of root fusion, the percentage frequency of isthmuses in the apical level varied from 9.3% to 42.8%, whilst the presence of apical deltas ranged from 18.5% to 57.1% of teeth. The root canal system of maxillary second molars with fused roots may have a high incidence of merging canals, isthmuses, apical deltas and C-shaped configurations. © 2017 International Endodontic Journal. Published by John Wiley & Sons Ltd.

Effects of nitrogen with and without acidified sulphur on an ectomycorrhizal community in a Sitka spruce (Picea sitchensis Bong. Carr) forest.

PubMed

Carfrae, J A; Skene, K R; Sheppard, L J; Ingleby, K; Crossley, A

2006-05-01

This preliminary study investigated the effects of enhanced nitrogen (NH4NO3 at 48 kg ha(-1) y(-1)), sulphur (Na2SO4 at 50 kg ha(-1) y(-1)), acidified nitrogen and sulphur (H2SO4 + NH4NO3) at pre-stated doses (pH 2.5), and acidified nitrogen and sulphur deposition at double these doses on the ectomycorrhizal community associated with a 13-year-old Sitka spruce (Picea sitchensis) forest. Sulphur deposition had little impact on below ground ectomycorrhizal diversity, but stimulated sporocarp production. Nitrogen inputs increased below ground colonisation compared to acidified nitrogen and sulphur, largely due to an increase in Tylospora fibrillosa colonisation. Sporocarp production and ectomycorrhizal root colonisation by Lactarius rufus were reduced in the nitrogen treated plots. These observations suggest that nitrogen deposition to a young plantation may suppress ectomycorrhizal fungi producing large sporocarps. It is proposed that enhanced nitrogen deposition increases ectomycorrhizal nitrogen assimilation, consuming more carbon and leaving less for extrametrical mycelium and sporocarp development.

The Hair Growth-Promoting Effect of Rumex japonicus Houtt. Extract

PubMed Central

Lee, Hyunkyoung; Kim, Na-Hyun; Yang, Hyeryeon; Bae, Seong Kyeong; Heo, Yunwi; Choudhary, Indu; Kwon, Young Chul; Byun, Jae Kuk; Yim, Hyeong Jun; Noh, Byung Seung; Heo, Jeong-Doo; Kim, Euikyung

2016-01-01

Rumex japonicus Houtt. is traditionally used as a medicinal plant to treat patients suffering from skin disease in Korea. However, the beneficial effect of Rumex japonicus Houtt. on hair growth has not been thoroughly examined. Therefore, the present study aims to investigate the hair growth-promoting effect of Rumex japonicus (RJ) Houtt. root extract using human dermal papilla cells (DPCs), HaCaT cells, and C57BL/6 mice model. RJ induced antiapoptotic and proliferative effects on DPCs and HaCaT cells by increasing Bcl-2/Bax ratio and activating cellular proliferation-related proteins, ERK and Akt. RJ also increased β-catenin via the inhibition of GSK-3β. In C57BL/6 mice model, RJ promoted the anagen induction and maintained its period. Immunohistochemistry analysis demonstrated that RJ upregulated Ki-67 and β-catenin expressions, suggesting that the hair growth effect of RJ may be mediated through the reinforcement of hair cell proliferation. These results provided important insights for the possible mechanism of action of RJ and its potential as therapeutic agent to promote hair growth. PMID:27974900

Comparison of machine-learning methods for above-ground biomass estimation based on Landsat imagery

NASA Astrophysics Data System (ADS)

Wu, Chaofan; Shen, Huanhuan; Shen, Aihua; Deng, Jinsong; Gan, Muye; Zhu, Jinxia; Xu, Hongwei; Wang, Ke

2016-07-01

Biomass is one significant biophysical parameter of a forest ecosystem, and accurate biomass estimation on the regional scale provides important information for carbon-cycle investigation and sustainable forest management. In this study, Landsat satellite imagery data combined with field-based measurements were integrated through comparisons of five regression approaches [stepwise linear regression, K-nearest neighbor, support vector regression, random forest (RF), and stochastic gradient boosting] with two different candidate variable strategies to implement the optimal spatial above-ground biomass (AGB) estimation. The results suggested that RF algorithm exhibited the best performance by 10-fold cross-validation with respect to R2 (0.63) and root-mean-square error (26.44 ton/ha). Consequently, the map of estimated AGB was generated with a mean value of 89.34 ton/ha in northwestern Zhejiang Province, China, with a similar pattern to the distribution mode of local forest species. This research indicates that machine-learning approaches associated with Landsat imagery provide an economical way for biomass estimation. Moreover, ensemble methods using all candidate variables, especially for Landsat images, provide an alternative for regional biomass simulation.

Multi-year evaluation of stocking rate and animal genotype on milk production per hectare within intensive pasture-based production systems.

PubMed

Coffey, E L; Delaby, L; Fleming, C; Pierce, K M; Horan, B

2018-03-01

The objective of this experiment was to evaluate the effect of stocking rate (SR) and animal genotype (BR) on milk production, body weight (BW), and body condition score (BCS) within intensive pasture-based systems. A total of 533 lactation records, from 246 elite genetic merit dairy cows were available for analysis; 68 Holstein-Friesian (HF) and 71 Jersey × Holstein-Friesian (JxHF) crossbred cows in each of 4 consecutive years (2013-2016, inclusive). Cows from each BR were randomly allocated to 1 of 3 whole-farm comparative SR treatments, low (LSR; 1,200 kg of BW/ha), medium (MSR; 1,400 kg of BW/ha), and high (HSR; 1,600 kg of BW/ha), and remained in the same SR treatments for the duration of the experiment. The effects of SR, BR, and their interaction on milk production/cow and per hectare, BW, BCS, and grazing characteristics were analyzed. Total pasture utilization per hectare consumed in the form of grazed pasture increased linearly as SR increased: least in LSR (10,237 kg of dry matter/ha), intermediate in MSR (11,016 kg of dry matter/ha), and greatest in HSR (11,809 kg of dry matter/ha). Milk and milk solids (MS) yield per hectare was greatest for HSR (15,942 and 1,354 kg, respectively), intermediate for MSR (14,191 and 1,220 kg, respectively), and least for LSR (13,186 and 1,139 kg, respectively) with similar trends evident for fat, protein, and lactose yield/ha. At higher SR (MSR and HSR), MS yield per kg of BW per ha was reduced (0.85 and 0.82 kg of MS/kg of BW, respectively) compared with LSR (0.93 kg of MS/kg of BW/ha). Holstein-Friesian cows achieved fewer grazing days per hectare (-37 d), and produced more milk (+561 kg/ha) but less fat plus protein (-57 kg/ha) compared with JxHF cows; the JxHF cows were lighter. At similar BW per hectare, JxHF cows produced more fat plus protein/ha during the grazing season at low (1,164 vs. 1,113 kg), medium (1,254 vs. 1,185 kg), and high (1,327 vs. 1,380 kg) SR. In addition, JxHF cows produced more fat plus protein per kg of BW/ha (0.90 kg) compared with HF cows (0.84 kg). The results highlight the superior productive efficiency of high genetic potential crossbred dairy cows within intensive pasture-based production systems. Copyright © 2018 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Synthesis and Characterization of Rhodamine B-ethylenediamine-hyaluronan Acid as Potential Biological Functional Materials

NASA Astrophysics Data System (ADS)

Li, Y. L.; Wang, W. X.; Wang, Y.; Zhang, W. B.; Gong, H. M.; Liu, M. X.

2018-05-01

The purpose of this study is to synthesize and characterize fluorescent polymers, rhodamine B-ethylenediamine-hyaluronan acid (RhB-EA-HA). RhB-EA-HA was successfully synthesized by ester ammonolysis reaction and amidation reaction. Moreover, the structural properties of RhB-EA-HA were characterized by 1H-NMR spectra, UV-vis spectrometry and Fourier transform infrared spectroscopy (FT-IR). RhB-EA-HA can be grafted on the surface of silica nanomaterials, which may be potential biological functional materials for drug delivery system.

Progress toward heterologous expression of active G-protein-coupled receptors in Saccharomyces cerevisiae: Linking cellular stress response with translocation and trafficking

PubMed Central

O'Malley, Michelle A; Mancini, J Dominic; Young, Carissa L; McCusker, Emily C; Raden, David; Robinson, Anne S

2009-01-01

High-level expression of mammalian G-protein-coupled receptors (GPCRs) is a necessary step toward biophysical characterization and high-resolution structure determination. Even though many heterologous expression systems have been used to express mammalian GPCRs at high levels, many receptors are improperly trafficked or are inactive in these systems. En route to engineering a robust microbial host for GPCR expression, we have investigated the expression of 12 GPCRs in the yeast Saccharomyces cerevisiae, where all receptors are expressed at the mg/L scale. However, only the human adenosine A2a (hA2aR) receptor is active for ligand-binding and located primarily at the plasma membrane, whereas other tested GPCRs are mainly retained within the cell. Selective receptors associate with BiP, an ER-resident chaperone, and activated the unfolded protein response (UPR) pathway, which suggests that a pool of receptors may be folded incorrectly. Leader sequence cleavage of the expressed receptors was complete for the hA2aR, as expected, and partially cleaved for hA2bR, hCCR5R, and hD2LR. Ligand-binding assays conducted on the adenosine family (hA1R, hA2aR, hA2bR, and hA3R) of receptors show that hA2aR and hA2bR, the only adenosine receptors that demonstrate leader sequence processing, display activity. Taken together, these studies point to translocation as a critical limiting step in the production of active mammalian GPCRs in S. cerevisiae. PMID:19760666

Hyaluronan influence on the onset of chondrogenic differentiation of mesenchymal stem cells.

PubMed

Dvorakova, Jana; Velebny, Vladimir; Kubala, Lukas

2008-10-01

Hyaluronan (HA) is an abundant component of chondrogenic tissue hence it is often used as a fundamental constituent in cartilage tissue substitutes. However, effects of different molecular weight HA on chondrogenic differentiation are not clear. The aim was to evaluate modulation of mesenchymal stem cell (MSC) early chondrogenesis by HA of molecular weights 100, 600 and 1 500 kDa. HA was applied on MSCs cultured in a pellet system for one, two and three weeks. Chondrogenesis was evaluated by determinations of gene expression of transcription factor Sox-9 and extracellular matrix proteins collagen type II and XI, aggrecan, and COMP by Real-Time PCR and completed with histological analysis. Upon chondrogenic induction, the respective pellets revealed active transcription of the chondrogenic genes together with proceeding accumulation of glycosaminoglycan (GAG) rich extracellular matrix. Sox-9 was also expressed in non-chondrogenic MSC controls. HA treated pellets were not significantly influenced on day 7 of culture. However, on day 14, lowered expression in some of the extracellular matrix proteins appeared together with a moderately smaller amount of GAG content in pellet sections. Nevertheless, the analysis on day 21 has demonstrated that HA did not affect the outcome of the differentiation by the end of the culture. Any difference regarding the molecular weight of the HA was not found. It could be speculated that HA induced a time shift in the phase of the dominant matrix protein onset which was in full compensated by the end of the evaluated time period. Thus, data suggest that HA of any tested molecular weight does not significantly modulate chondrogenesis of MSCs in pellet system.

Multifunctional targeted liposomal drug delivery for efficient glioblastoma treatment

PubMed Central

Belhadj, Zakia; Zhan, Changyou; Ying, Man; Wei, Xiaoli; Xie, Cao; Yan, Zhiqiang; Lu, Weiyue

2017-01-01

Glioblastoma multiforme (GBM) has been considered to be the most malignant brain tumors. Due to the existence of various barriers including the blood–brain barrier (BBB) and blood–brain tumor barrier (BBTB) greatly hinder the accumulation and deep penetration of chemotherapeutics, the treatment of glioma remains to be the most challenging task in clinic. In order to circumvent these hurdles, we developed a multifunctional liposomal glioma-targeted drug delivery system (c(RGDyK)/pHA-LS) modified with cyclic RGD (c(RGDyK)) and p-hydroxybenzoic acid (pHA) in which c(RGDyK) could target integrin αvβ3 overexpressed on the BBTB and glioma cells and pHA could target dopamine receptors on the BBB. In vitro, c(RGDyK)/pHA-LS could target glioblastoma cells (U87), brain capillary endothelial cells (bEnd.3) and umbilical vein endothelial cells (HUVECs) through a comprehensive pathway. Besides, c(RGDyK)/pHA-LS could also increase the cytotoxicity of doxorubicin encapsulated in liposomes on glioblastoma cells, and was able to penetrate inside the glioma spheroids after traversing the in vitro BBB and BBTB. In vivo, we demonstrated the targeting ability of c(RGDyK)/pHA-LS to intracranial glioma. As expected, c(RGDyK)/pHA-LS/DOX showed a median survival time of 35 days, which was 2.31-, 1.76- and 1.5-fold higher than that of LS/DOX, c(RGDyK)-LS/DOX, and pHA-LS/DOX, respectively. The findings here suggested that the multifunctional glioma-targeted drug delivery system modified with both c(RGDyK) and pHA displayed strong antiglioma efficiency in vitro and in vivo, representing a promising platform for glioma therapy. PMID:28978003

A national scale estimation of soil carbon stocks of Pinus densiflora forests in Korea: a modelling approach

NASA Astrophysics Data System (ADS)

Yi, K.; Park, C.; Ryu, S.; Lee, K.; Yi, M.; Kim, C.; Park, G.; Kim, R.; Son, Y.

2011-12-01

Soil carbon (C) stocks of Pinus densiflora forests in Korea were estimated using a generic forest soil C dynamics model based on the process of dead organic matter input and decomposition. Annual input of dead organic matter to the soil was determined by stand biomass and turnover rates of tree components (stem, branch, twig, foliage, coarse root, and fine root). The model was designed to have a simplified structure consisting of three dead organic matter C (DOC) pools (aboveground woody debris (AWD), belowground woody debris (BWD), and litter (LTR) pool) and one soil organic C (SOC) pool. C flows in the model were regulated by six turnover rates of stem, branch, twig, foliage, coarse root, and fine root, and four decay rates of AWD, BWD, LTR, and SOC. To simulate the soil C stocks of P. densiflora forests, statistical data of forest land area (1,339,791 ha) and growing stock (191,896,089 m3) sorted by region (nine provinces and seven metropolitan cities) and stand age class (11 to 20- (II), 21 to 30- (III), 31 to 40- (IV), 41 to 50- (V), and 51 to 60-year-old (VI)) were used. The growing stock of each stand age class was calculated for every region and representable site index was also determined by consulting the yield table. Other model parameters related to the stand biomass, annual input of dead organic matter and decomposition were estimated from previous studies conducted on P. densiflora forests in Korea, which were also applied for model validation. As a result of simulation, total soil C stock of P. densiflora forests were estimated as 53.9 MtC and soil C stocks per unit area ranged from 28.71 to 47.81 tC ha-1 within the soil depth of 30 cm. Also, soil C stocks in the P. densiflora forests of age class II, III, IV, V, and VI were 16,780,818, 21,450,812, 12,677,872, 2,366,939, and 578,623 tC, respectively, and highly related to the distribution of age classes. Soil C stocks per unit area initially decreased with stand age class and started to increase after the stand age class of V. Regional soil C stocks ranged from 9,805 to 15,595,802 tC, and were generally proportional to the forest land area. Our results suggest an approach to estimate soil C stock on a national scale by using a computer model and manipulating the existing statistical data.

Estimation of tree root distribution using electrical resistivity tomography

NASA Astrophysics Data System (ADS)

Schmaltz, Elmar; Uhlemann, Sebastian

2016-04-01

Trees influence soil-mantled slopes mechanically by anchoring in the soil with coarse roots. Forest-stands play an important role in mechanical reinforcement to reduce the susceptibility to slope failures. However, the effect of stabilisation of roots is connected with the distribution of roots in the ground. The architecture and distribution of tree roots is diverse and strongly dependent on species, plant age, stand density, relief, nutrient supply as well as climatic and pedologic conditions. Particularly trees growing on inclined slopes show shape-shifting root systems. Geophysical techniques are commonly used to non-invasively study hydrological and geomorphological subsurface properties, by imaging contrasting physical properties of the ground. This also poses the challenge for geophysical imaging of root systems, as properties, such as electrical resistivity, of dry and wet roots fall within the range of soils. The objective of this study is whether electrical resistivity tomography (ERT) allows a reliable reproduction of root systems of alone-standing trees on diverse inclined slopes. In this regard, we set the focus on the branching of secondary roots of two common walnut trees (Juglans regia L.) that were not disturbed in the adjacencies and thus expected to develop their root systems unhindered. Walnuts show a taproot-cordate root system with a strong tap-root in juvenile age and a rising cordate rooting with increasing age. Hence, mature walnuts can exhibit a root system that appears to be deformed or shifted respectively when growing at hillslope locations. We employed 3D ERT centred on the tree stem, comprising dipole-dipole measurements on a 12-by-41 electrode grid with 0.5 m and 1.0m electrode spacing in x- and y-direction respectively. Data were inverted using a 3D smoothness constrained non-linear least-squares algorithm. First results show that the general root distribution can be estimated from the resistivity models and that shape-shifting effects of secondary roots of the two Juglans regia in differently inclined ambiences can be imaged using 3D ERT. The results of this study can yield a grasp about the dimension of root architecture of single trees by using non-invasive geophysical techniques and give evidence about how roots influence the soil mantle mechanically and hydrologically according to the spatial distribution of their coarse roots.

Hyaluronan--a review of the recent patent literature.

PubMed

Moore, A R

2000-02-01

A review of patent literature surrounding the use of hyaluronan (HA) and its derivatives, or agents capable of modulating endogenous levels, is presented. Indications are many and varied and include arthritis, abnormal wound healing, neoplasia, prevention of surgical adhesions and dermatological disorders. In many cases, it is the physicochemical and biological properties of HA itself that have been exploited. For example, HA and/or its derivatives have been suggested as a synovial fluid replacement, a vehicle for topical application of drugs, a matrix for sustained drug release and a putative drug delivery system (targeting HA receptors at sites of pathology). In each of these examples, the lack of toxicity of HA and its biocompatability are important considerations.

Water Deficit Enhances C Export to the Roots in Arabidopsis thaliana Plants with Contribution of Sucrose Transporters in Both Shoot and Roots1[OPEN

PubMed Central

Durand, Mickaël; Porcheron, Benoît; Maurousset, Laurence; Lemoine, Rémi; Pourtau, Nathalie

2016-01-01

Root high plasticity is an adaptation to its changing environment. Water deficit impairs growth, leading to sugar accumulation in leaves, part of which could be available to roots via sucrose (Suc) phloem transport. Phloem loading is widely described in Arabidopsis (Arabidopsis thaliana), while unloading in roots is less understood. To gain information on leaf-to-root transport, a soil-based culture system was developed to monitor root system architecture in two dimensions. Under water deficit (50% of soil water-holding capacity), total root length was strongly reduced but the depth of root foraging and the shape of the root system were less affected, likely to improve water uptake. 14CO2 pulse-chase experiments confirmed that water deficit enhanced carbon (C) export to the roots, as suggested by the increased root-to-shoot ratio. The transcript levels of AtSWEET11 (for sugar will eventually be exported transporter), AtSWEET12, and AtSUC2 (for Suc carrier) genes, all three involved in Suc phloem loading, were significantly up-regulated in leaves of water deficit plants, in accordance with the increase in C export from the leaves to the roots. Interestingly, the transcript levels of AtSUC2 and AtSWEET11 to AtSWEET15 were also significantly higher in stressed roots, underlying the importance of Suc apoplastic unloading in Arabidopsis roots and a putative role for these Suc transporters in Suc unloading. These data demonstrate that, during water deficit, plants respond to growth limitation by allocating relatively more C to the roots to maintain an efficient root system and that a subset of Suc transporters is potentially involved in the flux of C to and in the roots. PMID:26802041

Influence of arbuscular mycorrhizae on the root system of maize plants under salt stress.

PubMed

Sheng, Min; Tang, Ming; Chen, Hui; Yang, Baowei; Zhang, Fengfeng; Huang, Yanhui

2009-07-01

Salt stress has become a severe global problem, and salinity is one of the most important abiotic factors limiting plant growth and yield. It is known that arbuscular mycorrhizal (AM) fungi decrease plant yield losses under salinity. With the aim of determining whether AM inoculation would give an advantage to root development under salt stress, a greenhouse experiment was carried out with AM or without AM fungi. Maize plants were grown in a sand and soil mixture with 5 NaCl levels (0, 0.5, 1.0, 1.5, and 2.0 g/kg dry substrate) for 55 days, following 15 days of nonsaline pretreatment. At all salt levels, mycorrhizal plants had higher dry shoot and root mass, higher root activity, and lower root to shoot ratios than non-mycorrhizal plants. In salt-free soil, root length, root surface area, root volume, and number of root tips and forks were significantly larger in mycorrhizal plants than in non-mycorrhizal plants, whereas, under salt stress, average root diameter and root volume of mycorrhizal plants were larger than those of non-mycorrhizal plants. Regardless of the NaCl level, mycorrhizal plants had lower specific root length, lower percentage of root length in the 0-0.2 mm diameter class, and higher percentage of root length in both the 0.2-0.4 mm and 0.4-0.6 mm diameter classes, which suggests that the root system shows a significant shift towards a thicker root system when maize plants were inoculated with Glomus mosseae (Nicolson & Gerdemann). The results presented here indicate that the improvements in root activity and the coarse root system of mycorrhizal maize may help in alleviating salt stress on the plant.

Cavity size and copper root pruning affect production and establishment of container-grown longleaf pine seedlings

Treesearch

Marry Anne Sword Sayer; James D. Haywood; Shi-Jean Susana Sung

2009-01-01

With six container types, we tested the effects of cavity size (i.e., 60, 93, and 170 ml) and copper root pruning on the root system development of longleaf pine (Pinus palustris Mill.) seedlings grown in a greenhouse. We then evaluated root egress during a root growth potential test and assessed seedling morphology and root system development 1 year after planting in...

Plant roots: understanding structure and function in an ocean of complexity

PubMed Central

Ryan, Peter R.; Delhaize, Emmanuel; Watt, Michelle; Richardson, Alan E.

2016-01-01

Background The structure and function of plant roots and their interactions with soil are exciting scientific frontiers that will ultimately reveal much about our natural systems, global water and mineral and carbon cycles, and help secure food supplies into the future. This Special Issue presents a collection of papers that address topics at the forefront of our understanding of root biology. Scope These papers investigate how roots cope with drought, nutrient deficiencies, toxicities and soil compaction as well as the interactions that roots have with soil microorganisms. Roots of model plant species, annual crops and perennial species are studied in short-term experiments through to multi-year trials. Spatial scales range from the gene up to farming systems and nutrient cycling. The diverse, integrated approaches described by these studies encompass root genetics as applied to soil management, as well as documenting the signalling processes occurring between roots and shoots and between roots and soil. Conclusions This Special Issue on roots presents invited reviews and research papers covering a span of topics ranging from fundamental aspects of anatomy, growth and water uptake to roots in crop and pasture systems. Understanding root structure and function and adaptation to the abiotic and biotic stresses encountered in field conditions is important for sustainable agricultural production and better management of natural systems.

Construction of Hyaluronic Tetrasaccharide Clusters Modified Polyamidoamine siRNA Delivery System.

PubMed

Ma, Yingcong; Sha, Meng; Cheng, Shixuan; Yao, Wang; Li, Zhongjun; Qi, Xian-Rong

2018-06-14

The CD44 protein, as a predominant receptor for hyaluronan (HA), is highly expressed on the surface of multiple tumor cells. HA, as a targeting molecule for a CD44-contained delivery system, increases intracellular drug concentration in tumor tissue. However, due to the weak binding ability of hyaluronan oligosaccharide to CD44, targeting for tumor drug delivery has been restricted. In this study, we first use a HA tetrasaccharide cluster as the target ligand to enhance the binding ability to CD44. A polyamidoamine (PAMAM) dendrimer was modified by a HA tetrasaccharide cluster as a nonviral vector for small interfering RNA (siRNA) delivery. The dendrimer/siRNA nanocomplexes increased the cellular uptake capacity of siRNA through the CD44 receptor-mediated endocytosis pathway, allowing the siRNA to successfully escape the endosome/lysosome. Compared with the control group, nanocomplexes effectively reduced the expression of GFP protein and mRNA in MDA-MB-231-GFP cells. This delivery system provides a foundation to increase the clinical applications of PAMAM nanomaterials.

Root-Contact/Pressure-Plate Assembly For Hydroponic System

NASA Technical Reports Server (NTRS)

Morris, Carlton E.; Loretan, Philip A.; Bonsi, Conrad K.; Hill, Walter A.

1994-01-01

Hydroponic system includes growth channels equipped with rootcontact/pressure-plate assemblies. Pump and associated plumbing circulate nutrient liquid from reservoir, along bottom of growth channels, and back to reservoir. Root-contact/pressure-plate assembly in each growth channel stimulates growth of roots by applying mild contact pressure. Flat plate and plate connectors, together constitute pressure plate, free to move upward to accommodate growth of roots. System used for growing sweetpotatoes and possibly other tuber and root crops.

Theoretical Issues of Validity in the Measurement of Aided Speech Reception Threshold in Noise for Comparing Nonlinear Hearing Aid Systems.

PubMed

Naylor, Graham

2016-07-01

Adaptive Speech Reception Threshold in noise (SRTn) measurements are often used to make comparisons between alternative hearing aid (HA) systems. Such measurements usually do not constrain the signal-to-noise ratio (SNR) at which testing takes place. Meanwhile, HA systems increasingly include nonlinear features that operate differently in different SNRs, and listeners differ in their inherent SNR requirements. To show that SRTn measurements, as commonly used in comparisons of alternative HA systems, suffer from threats to their validity, to illustrate these threats with examples of potentially invalid conclusions in the research literature, and to propose ways to tackle these threats. An examination of the nature of SRTn measurements in the context of test theory, modern nonlinear HAs, and listener diversity. Examples from the audiological research literature were used to estimate typical interparticipant variation in SRTn and to illustrate cases where validity may have been compromised. There can be no doubt that SRTn measurements, when used to compare nonlinear HA systems, in principle, suffer from threats to their internal and external/ecological validity. Interactions between HA nonlinearities and SNR, and interparticipant differences in inherent SNR requirements, can act to generate misleading results. In addition, SRTn may lie at an SNR outside the range for which the HA system is designed or expected to operate in. Although the extent of invalid conclusions in the literature is difficult to evaluate, examples of studies were nevertheless identified where the risk of each form of invalidity is significant. Reliable data on ecological SNRs is becoming available, so that ecological validity can be assessed. Methodological developments that can reduce the risk of invalid conclusions include variations on the SRTn measurement procedure itself, manipulations of stimulus or scoring conditions to place SRTn in an ecologically relevant range, and design and analysis approaches that take account of interparticipant differences. American Academy of Audiology.

Energy balances and greenhouse gas emissions of crude palm oil production system in Indonesia (Case study: Mill P, PT X, Sumatera Island)

NASA Astrophysics Data System (ADS)

Andarani, Pertiwi; Nugraha, Winardi Dwi; Wieddya

2017-03-01

Indonesia is one of the largest palm oil producers in the world. The total exported crude palm oil (CPO) and its derivatives in 2015 reached about 26.40 million tons or increase at 21% compared to the previous year (2014). However, the further expansion of the CPO production system could potentially have environmental impacts. The objective of this study is to analyze the energy balances and greenhouse gas emissions at mill P, PT X located in Sumatera Island. System analysis approaches was applied to this study and the assessment was focused on a CPO production system in PT XYZ located on the Sumatera Island. The system boundary was determined based on the field study. The data collection consisted of all the input and output energy which involving all input materials (including fertilizers, herbicides, pesticides, water, etc.) and energy consumption (consumption of diesel, electricity, etc.) starting from plantation activities (at the oil palm plantation) to the conversion process (at the palm oil mill). The energy output from biodiesel was 480.46 GJ/ha (2014) and decreased to 450.79 GJ/ha (2015). Surplus energy from biogas was 15.21 GJ/ha (2014) and 13.57 GJ/ha (2015). The NEP was 494.56 GJ/ha and decreased to 317.84 GJ/ha. Meanwhile, the NER decreased from 3.27 (2014) to 3.17 (2015). The NEP in this mill is significantly higher than other related studies of similar palm oil production system in other companies. The emission of the activities in the palm estate increased from 12.50 kgCO2eq/ton FFB to 22.057 kgCO2eq/ton FFB. In the palm oil mill, the emission decreased from 2,509.93 kgCO2eq/ton CPO to 2,057.14 kgCO2eq/ton CPO.

Environmental and eelgrass response to dike removal: Nisqually River Delta (2010–14)

USGS Publications Warehouse

Takesue, Renee K.

2016-10-03

Restoration of tidal flows to formerly diked marshland can alter land-to-sea fluxes and patterns of accumulation of terrestrial sediment and organic matter, and these tidal flows can also affect existing nearshore habitats. Dikes were removed from 308 hectares (ha) of the Nisqually National Wildlife Refuge on the Nisqually River Delta in south Puget Sound, Washington, in fall 2009 to improve habitat for wildlife, such as juvenile salmon. Ecologically important intertidal and subtidal eelgrass (Zostera marina) beds grow on the north and west margins of the delta. The goal of this study was to understand long-term changes in eelgrass habitat and their relation to dike removal. Sediment and eelgrass properties were monitored annually in May from 2010 to 2014 at two sites on the west side of the Nisqually River Delta along McAllister Creek, a spring-fed creek near two restored tidal channels. In May 2014, the mean canopy height of eelgrass was the same as in previous years in an 8-ha bed extending to the Nisqually River Delta front, but mean canopy height was 20 percent lower in a 0.3-ha eelgrass bed closer to the restored marsh when compared to mean canopy height of eelgrass in May 2010, 6 months after dike removal was completed. Over 5 years, the amount of eelgrass leaf area per square meter (m2) in the 8-ha bed increased slightly, and surface-sediment grain size became finer. In contrast, in the 0.3-ha bed, eelgrass leaf area per m2 decreased by 45 percent, and surface sediment coarsened. Other potential stressors, including sediment pore water reduction-oxidation potential (redox) and hydrogen sulfide (H2S) concentration in the eelgrass rhizosphere, or root zone, were below levels that negatively affect eelgrass growth and therefore did not appear to be environmental stressors on plants. Eelgrass biomass partitioning, though less favorable in the 8-ha eelgrass bed compared to the 0.3-ha one, was well above the critical above-ground to below-ground biomass ratio of 2:1 for Z. marina, an indication that these plants were not at risk of a carbon deficit during low-light conditions. After 5 years, nearshore changes associated with the restoration of tidal flows to formerly diked marshes of the Nisqually River Delta appeared to have little impact on the large eelgrass bed extending from Luhr Beach to the Nisqually River Delta front; however, restoration appears to be contributing to the decline of a small eelgrass bed closer to the restoration area.

Rheological study of in-situ crosslinkable hydrogels based on hyaluronanic acid, collagen and sericin.

PubMed

Vulpe, Raluca; Le Cerf, Didier; Dulong, Virginie; Popa, Marcel; Peptu, Catalina; Verestiuc, Liliana; Picton, Luc

2016-12-01

The elaboration of chemically crosslinked hydrogels based on collagen (C), hyaluronanic acid (HA) and sericin (S) with different polymer ratios was investigated by in-situ rheology. This reaction was performed via amide or ester bond reaction activated by carbodiimide, in pure water. Prior to molecule crosslinking, the rheological behaviour of the biopolymers (alone or in mixture) was characterized in a semi-dilute concentration regime. Both flow and dynamic measurements showed that uncrosslinked collagen alone appears to be rather elastic with yield stress properties, whereas uncrosslinked HA alone appears to be rather shear thinning and viscoelastic in agreement with entangled polymer behaviour. Sericin exhibited Newtonian low viscosity behaviour according to its very low molar mass. Before crosslinking, HA exhibited viscoelastic behaviour at concentrations above the critical entangled concentration (C*) in the mixtures, thus HA shows promise as a matrix for future crosslinked networks, whereas sericin did not significantly modify the rheology. During the reaction, followed by rheology, the kinetics were slower for pure HA systems compared with the mixtures (i.e., with added collagen and/or to a lesser extent sericin). At the same time, the final network of hydrogels (i.e., the elastic modulus) was more structured in the mixture based systems. This result is explained by ester bonds (the only possibility for pure HA systems), which are less favourable and reactive than amide bonds (possible with sericin and collagen). The presence of collagen in the HA matrix reinforced the hydrogel network. SEM studies confirmed the structure of the hydrogels, and in vitro degradability was globally consistent with the effect of the selected enzyme according to the hydrogel composition. All the elaborated hydrogels were non-cytotoxic in vitro. Copyright © 2016 Elsevier B.V. All rights reserved.

The ligand-binding profile of HARE: hyaluronan and chondroitin sulfates A, C, and D bind to overlapping sites distinct from the sites for heparin, acetylated low-density lipoprotein, dermatan sulfate, and CS-E.

PubMed

Harris, Edward N; Weigel, Paul H

2008-08-01

The hyaluronic acid receptor for endocytosis (HARE)/ Stabilin-2 is the primary systemic scavenger receptor for hyaluronan (HA), the chondroitin sulfates (CS), dermatan sulfate (DS), and nonglycosaminoglycan (GAG) ligands such as acetylated low-density lipoprotein (AcLDL), pro-collagen propeptides, and advanced glycation end products. We recently discovered that HARE is also a systemic scavenger receptor for heparin (Hep) (Harris EN, Weigel JA, Weigel PH. 2008. The human hyaluronan receptor for endocytosis [HARE/Stabilin-2] is a systemic clearance receptor for heparin. J Biol Chem. 283:17341-17350). Our goal was to map the binding sites of eight different ligands within HARE. We used biotinylated GAGs and radio-iodinated streptavidin or AcLDL to assess the binding activities of ligands directly or indirectly (by competition with unlabeled ligands) in endocytosis assays using stable cell lines expressing the 315 or 190 kDa HA receptor for endocytosis (315- or 190-HARE) isoforms, and ELISA-like assays, with purified recombinant soluble 190-HARE ecto-domain. For example, Hep binding to HARE was competed by DS, CS-E, AcLDL, and dextran sulfate, but not by other CS types, HA, dextran, or heparosan. (125)I-AcLDL binding to HARE was partially competed by Hep and dextran sulfate, but not competed by HA. Two ligands, DS and CS-E, competed with both Hep and HA to some degree. Hep and HA binding or endocytosis is mutually inclusive; binding of these two GAGs occurs with functionally separate, noncompetitive, and apparently noninteracting domains. Thus, HARE binds to HA and Hep simultaneously. Although the domain(s) responsible for Hep binding remains unknown, the Link domain was required for HARE binding to HA, CS-A, CS-C, and CS-D. These results enable us to outline, for the first time, a binding activity map for multiple ligands of HARE.

The ligand-binding profile of HARE: hyaluronan and chondroitin sulfates A, C, and D bind to overlapping sites distinct from the sites for heparin, acetylated low-density lipoprotein, dermatan sulfate, and CS-E

PubMed Central

Harris, Edward N.; Weigel, Paul H.

2008-01-01

The hyaluronic acid receptor for endocytosis (HARE)/ Stabilin-2 is the primary systemic scavenger receptor for hyaluronan (HA), the chondroitin sulfates (CS), dermatan sulfate (DS), and nonglycosaminoglycan (GAG) ligands such as acetylated low-density lipoprotein (AcLDL), pro-collagen propeptides, and advanced glycation end products. We recently discovered that HARE is also a systemic scavenger receptor for heparin (Hep) (Harris EN, Weigel JA, Weigel PH. 2008. The human hyaluronan receptor for endocytosis [HARE/Stabilin-2] is a systemic clearance receptor for heparin. J Biol Chem. 283:17341–17350). Our goal was to map the binding sites of eight different ligands within HARE. We used biotinylated GAGs and radio-iodinated streptavidin or AcLDL to assess the binding activities of ligands directly or indirectly (by competition with unlabeled ligands) in endocytosis assays using stable cell lines expressing the 315 or 190 kDa HA receptor for endocytosis (315- or 190-HARE) isoforms, and ELISA-like assays, with purified recombinant soluble 190-HARE ecto-domain. For example, Hep binding to HARE was competed by DS, CS-E, AcLDL, and dextran sulfate, but not by other CS types, HA, dextran, or heparosan. 125I-AcLDL binding to HARE was partially competed by Hep and dextran sulfate, but not competed by HA. Two ligands, DS and CS-E, competed with both Hep and HA to some degree. Hep and HA binding or endocytosis is mutually inclusive; binding of these two GAGs occurs with functionally separate, noncompetitive, and apparently noninteracting domains. Thus, HARE binds to HA and Hep simultaneously. Although the domain(s) responsible for Hep binding remains unknown, the Link domain was required for HARE binding to HA, CS-A, CS-C, and CS-D. These results enable us to outline, for the first time, a binding activity map for multiple ligands of HARE. PMID:18499864

Soil degradation in farmlands of California's San Joaquin Valley resulting from drought-induced land-use changes

NASA Astrophysics Data System (ADS)

Scudiero, Elia; Skaggs, Todd; Anderson, Ray; Corwin, Dennis

2016-04-01

Irrigation in California's Central Valley (USA) has decreased significantly due to water shortages resulting from the current drought, which began in 2010. In particular, fallow fields in the west side of the San Joaquin Valley (WSJV), which is the southwest portion of the Central Valley, increased from around 12% in the years before the drought (2007-2010) to 20-25% in the following years (2011-2015). We monitored and mapped drought-induced edaphic changes in salinity at two scales: (i) field scale (32.4-ha field in Kings County) and (ii) water district scale (2400 ha at -former- Broadview Water District in Fresno County). At both scales drought-induced land-use changes (i.e., shift from irrigated agriculture to fallow) drastically decreased soil quality by increasing salinity (and sodicity), especially in the root-zone (top 1.2 m). The field study monitors the spatial (three dimensions) changes of soil salinity (and sodicity) in the root-zone during 10 years of irrigation with drainage water followed by 4 years of no applied irrigation water (only rainfall) due to drought conditions. Changes of salinity (and other edaphic properties), through the soil profile (down to 1.2 m, at 0.3-m increments), were monitored and modeled using geospatial apparent electrical conductivity measurements and extensive soil sampling in 1999, 2002, 2004, 2009, 2011, and 2013. Results indicate that when irrigation was applied, salts were leached from the root-zone causing a remarkable improvement in soil quality. However, in less than two years after termination of irrigation, salinity in the soil profile returned to original levels or higher across the field. At larger spatial scales the effect of drought-induced land-use change on root-zone salinity is also evident. Up to spring 2006, lands in Broadview Water District (BWD) were used for irrigated agriculture. Water rights were then sold and the farmland was retired. Soil quality decreased since land retirement, especially during the drought years. Root-zone soil salinity was mapped in 1991 using geospatial apparent electrical conductivity measurements and extensive soil sampling and in 2013 using recent root-zone remote sensing salinity map for the WSJV (developed and published by the U.S. Salinity Laboratory, USDA-ARS), which was calibrated and (independently) validated, including fields from the BWD. Results reveal dramatic increases in soil salinity for all the fields that were originally non-saline and slightly-saline in 1991. Additionally, time-series analysis of very-high resolution ortho-imagery (from Google Earth and USGS) suggests that surface soil quality drastically decreased especially during the drought years. Our research shows how terminating irrigation in California's Central Valley can lead to substantial soil salinization in a very short time. Salinization in WSJV due to the termination of irrigation is a consequence of the complex multi-scale interaction of geomorphologic, topographic, and anthropogenic factors requiring yearly monitoring to adequately assess the impacts of drought for use in field- and basin-scale water management decisions. Among other concerns, increased salinity and sodicity affect vegetation growth and may lead to increased soil erosion and very-fine dust formation creating health and environmental hazards.

Jatropha curcas L. Root Structure and Growth in Diverse Soils

PubMed Central

Valdés-Rodríguez, Ofelia Andrea; Sánchez-Sánchez, Odilón; Pérez-Vázquez, Arturo; Caplan, Joshua S.; Danjon, Frédéric

2013-01-01

Unlike most biofuel species, Jatropha curcas has promise for use in marginal lands, but it may serve an additional role by stabilizing soils. We evaluated the growth and structural responsiveness of young J. curcas plants to diverse soil conditions. Soils included a sand, a sandy-loam, and a clay-loam from eastern Mexico. Growth and structural parameters were analyzed for shoots and roots, although the focus was the plasticity of the primary root system architecture (the taproot and four lateral roots). The sandy soil reduced the growth of both shoot and root systems significantly more than sandy-loam or clay-loam soils; there was particularly high plasticity in root and shoot thickness, as well as shoot length. However, the architecture of the primary root system did not vary with soil type; the departure of the primary root system from an index of perfect symmetry was 14 ± 5% (mean ± standard deviation). Although J. curcas developed more extensively in the sandy-loam and clay-loam soils than in sandy soil, it maintained a consistent root to shoot ratio and root system architecture across all types of soil. This strong genetic determination would make the species useful for soil stabilization purposes, even while being cultivated primarily for seed oil. PMID:23844412

Jatropha curcas L. root structure and growth in diverse soils.

PubMed

Valdés-Rodríguez, Ofelia Andrea; Sánchez-Sánchez, Odilón; Pérez-Vázquez, Arturo; Caplan, Joshua S; Danjon, Frédéric

2013-01-01

Unlike most biofuel species, Jatropha curcas has promise for use in marginal lands, but it may serve an additional role by stabilizing soils. We evaluated the growth and structural responsiveness of young J. curcas plants to diverse soil conditions. Soils included a sand, a sandy-loam, and a clay-loam from eastern Mexico. Growth and structural parameters were analyzed for shoots and roots, although the focus was the plasticity of the primary root system architecture (the taproot and four lateral roots). The sandy soil reduced the growth of both shoot and root systems significantly more than sandy-loam or clay-loam soils; there was particularly high plasticity in root and shoot thickness, as well as shoot length. However, the architecture of the primary root system did not vary with soil type; the departure of the primary root system from an index of perfect symmetry was 14 ± 5% (mean ± standard deviation). Although J. curcas developed more extensively in the sandy-loam and clay-loam soils than in sandy soil, it maintained a consistent root to shoot ratio and root system architecture across all types of soil. This strong genetic determination would make the species useful for soil stabilization purposes, even while being cultivated primarily for seed oil.

Effect of humic acid on the sorption of perfluorooctane sulfonate (PFOS) and perfluorobutane sulfonate (PFBS) on boehmite.

PubMed

Wang, Fei; Shih, Kaimin; Leckie, James O

2015-01-01

The sorption of PFOS and PFBS on boehmite was significantly retarded by the competitive sorption of humic acid (HA), implying that PFOS and PFBS are likely more mobile in water and groundwater systems enriched with HA. The sorption behavior of PFOS and PFBS on the HA-modified boehmite surface were also found to differ due to their different chain lengths. For a partially HA-modified boehmite surface, the isotherm study showed that PFOS had a much higher maximum sorption capacity than PFBS and that PFOS might possess additional surface interactions besides electrostatic interaction. For a HA-saturated boehmite, a linear sorption isotherm was found for PFOS while nearly no PFBS sorption was observed. This indicates that sorption behavior between PFOS and the sorbed HA on boehmite was dominated by hydrophobic interactions, instead of electrostatic interaction. In addition, a conceptual model combining hydrophobic and electrostatic interaction was established to explain the sorption behavior of PFOS and PFBS on HA-modified boehmite. Finally, the results revealed that the sorption of PFOS and PFBS on HA-modified boehmite is pH-dependent. The neutralization of negative sites on HA-modified boehmite reduced the electrostatic repulsion and enhanced the partitioning of PFBS on the sorbed HA. Copyright © 2014 Elsevier Ltd. All rights reserved.

Hypothalamic amenorrhea: from diagnosis to therapeutical approach.

PubMed

Genazzani, A D; Chierchia, E; Santagni, S; Rattighieri, E; Farinetti, A; Lanzoni, C

2010-05-01

Among secondary amenorrheas, hypothalamic amenorrhea (HA) is the one with no evidence of endocrine/systemic causal factors. HA is mainly related to various stressors affecting neuroendocrine control of the reproductive axis. In clinical practice, HA is mainly associated with metabolic, physical, or psychological stress. Stress is the adaptive response of our body through all its homeostatic systems, to external and/or internal stimuli that activate specific and nonspecific physiological pathways. HA occurs generally after severe stressed conditions/situations such as dieting, heavy training, or intense emotional events, all situations that can induce amenorrhea with or without body weight loss and HA is a secondary amenorrhea with a diagnosis of exclusion. In fact, the diagnosis is essentially based on a good anamnestic investigation. It has to be investigated using the clinical history of the patient: occurrence of menarche, menstrual cyclicity, time and modality of amenorrhea, and it has to be excluded any endocrine disease or any metabolic (i.e., diabetes) and systemic disorders. It is necessary to identify any stressed situation induced by loss, family or working problems, weight loss or eating disorders, or physical training or agonist activity. Peculiar, though not specific, endocrine investigations might be proposed but no absolute parameter can be proposed since HA is greatly dependent from individual response to stressors and/or the adaptive response to stress. This chapter aims to give insights into diagnosis and putative therapeutic strategies. Copyright 2010 Elsevier Masson SAS. All rights reserved.

Quality aspects of ex vivo root canal treatments done by undergraduate dental students using four different endodontic treatment systems.

PubMed

Jungnickel, Luise; Kruse, Casper; Vaeth, Michael; Kirkevang, Lise-Lotte

2018-04-01

To evaluate factors associated with treatment quality of ex vivo root canal treatments performed by undergraduate dental students using different endodontic treatment systems. Four students performed root canal treatment on 80 extracted human teeth using four endodontic treatment systems in designated treatment order following a Latin square design. Lateral seal and length of root canal fillings was radiographically assessed; for lateral seal, a graded visual scale was used. Treatment time was measured separately for access preparation, biomechanical root canal preparation, obturation and for the total procedure. Mishaps were registered. An ANOVA mirroring the Latin square design was performed. Use of machine-driven nickel-titanium systems resulted in overall better quality scores for lateral seal than use of the manual stainless-steel system. Among systems with machine-driven files, scores did not significantly differ. Use of machine-driven instruments resulted in shorter treatment time than manual instrumentation. Machine-driven systems with few files achieved shorter treatment times. With increasing number of treatments, root canal-filling quality increased, treatment time decreased; a learning curve was plotted. No root canal shaping file separated. The use of endodontic treatment systems with machine-driven files led to higher quality lateral seal compared to the manual system. The three contemporary machine-driven systems delivered comparable results regarding quality of root canal fillings; they were safe to use and provided a more efficient workflow than the manual technique. Increasing experience had a positive impact on the quality of root canal fillings while treatment time decreased.

Contrasting Effects of Cattle Manure Applications and Root-Induced Changes on Heavy Metal Dynamics in the Rhizosphere of Soybean in an Acidic Haplic Fluvisol: A Chronological Pot Experiment.

PubMed

Chu, Qingnan; Sha, Zhimin; Osaki, Mitsuru; Watanabe, Toshihiro

2017-04-19

To characterize the dynamic mobilization of heavy metals (HM) in a crop-soil system affected by cattle manure (CM) application, soybean [Glycine max L. Merr. cv. Toyoharuka] crops were exposed in a chronological pot experiment to three CM application rates and sampled at two vegetative stages and two reproductive stages. A sequential extraction procedure for metal fractionation, soil pH, microbial activity, and plant HM uptake was determined. In non-rhizopshere soil, with CM application a liming effect was detected, and increased microbial activity was detected at the reproductive stage. CM application shifted Cd from available state to oxide-bound pool in non-rhizosphere soil; however, shifts in Cd from an oxide-bound pool to the available state were observed in rhizosphere soil. CM application stabilized the available Zn and Pb to oxide-bound Zn and organic-bound Pb in both non-rhizosphere and rhizosphere soils, and the stabilizing degree increased with higher CM application rates. The promoted Zn immobilization in the rhizosphere was due to the liming effects induced by added CM that counteracted the root-induced acidification. On the basis of a stepwise multiple regression analysis, the shift of Cd and Pb fractionation was mainly related to microbial activity. Adding manure inhibited Zn and Pb uptake but promoted Cd uptake by soybean, and a greater influence was detected at the reproductive stage, at which CM application increased the root Cd-absorbing power but did not significantly affect the Zn- and Pb-absorbing powers. In an agricultural context, long-term CM application, even at the recommended rate of 10.13 Mg ha -1 , may cause a soybean Zn deficiency and high Pb accumulation in Haplic Fluvisols, although CM is often considered as an environmentally friendly fertilizer.

Cytokinin-induced promotion of root meristem size in the fern Azolla supports a shoot-like origin of euphyllophyte roots.

PubMed

de Vries, Jan; Fischer, Angela Melanie; Roettger, Mayo; Rommel, Sophie; Schluepmann, Henriette; Bräutigam, Andrea; Carlsbecker, Annelie; Gould, Sven Bernhard

2016-01-01

The phytohormones cytokinin and auxin orchestrate the root meristem development in angiosperms by determining embryonic bipolarity. Ferns, having the most basal euphyllophyte root, form neither bipolar embryos nor permanent embryonic primary roots but rather an adventitious root system. This raises the questions of how auxin and cytokinin govern fern root system architecture and whether this can tell us something about the origin of that root. Using Azolla filiculoides, we characterized the influence of IAA and zeatin on adventitious fern root meristems and vasculature by Nomarski microscopy. Simultaneously, RNAseq analyses, yielding 36,091 contigs, were used to uncover how the phytohormones affect root tip gene expression. We show that auxin restricts Azolla root meristem development, while cytokinin promotes it; it is the opposite effect of what is observed in Arabidopsis. Global gene expression profiling uncovered 145 genes significantly regulated by cytokinin or auxin, including cell wall modulators, cell division regulators and lateral root formation coordinators. Our data illuminate both evolution and development of fern roots. Promotion of meristem size through cytokinin supports the idea that root meristems of euphyllophytes evolved from shoot meristems. The foundation of these roots was laid in a postembryonically branching shoot system. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Stocks and fluxes of carbon associated with land use change in Southeast Asian tropical peatlands: A review

NASA Astrophysics Data System (ADS)

Hergoualc'h, Kristell; Verchot, Louis V.

2011-06-01

The increasing and alarming trend of degradation and deforestation of tropical peat swamp forests may contribute greatly to climate change. Estimates of carbon (C) losses associated with land use change in tropical peatlands are needed. To assess these losses we examined C stocks and peat C fluxes in virgin peat swamp forests and tropical peatlands affected by six common types of land use. Phytomass C loss from the conversion of virgin peat swamp forest to logged forest, fire-damaged forest, mixed croplands and shrublands, rice field, oil palm plantation, and Acacia plantation were calculated using the stock difference method and estimated at 116.9 ± 39.8, 151.6 ± 36.0, 204.1 ± 28.6, 214.9 ± 28.4, 188.1 ± 29.8, and 191.7 ± 28.5 Mg C ha-1, respectively. Total C loss from uncontrolled fires ranged from 289.5 ± 68.1 Mg C ha-1 in rice fields to 436.2 ± 77.0 Mg C ha-1 in virgin peat swamp forest. We assessed the effects of land use change on C stocks in the peat by looking at how the change in vegetation cover altered the main C inputs (litterfall and root mortality) and outputs (heterotrophic respiration, CH4 flux, fires, and soluble and physical removal) before and after conversion. The difference between the soil input-output balances in the virgin peat swamp forest and in the oil palm plantation gave an estimate of peat C loss of 10.8 ± 3.5 Mg C ha-1 yr-1. Peat C loss from other land use conversions could not be assessed due to lack of data, principally on soil heterotrophic respiration rates. Over 25 years, the conversion of tropical virgin peat swamp forest into oil palm plantation represents a total C loss from both biomass and peat of 427.2 ± 90.7 Mg C ha-1 or 17.1 ± 3.6 Mg C ha-1 yr-1. In all situations, peat C loss contributed more than 63% to total C loss, demonstrating the urgent need in terms of the atmospheric greenhouse gas burden to protect tropical virgin peat swamp forests from land use change and fires.

Engineering of pulsed laser deposited calcium phosphate biomaterials in controlled atmospheres

NASA Astrophysics Data System (ADS)

Drukteinis, Saulius E.

Synthetic calcium phosphates (CAP) such as hydroxyapatite (HA) have been used as regenerative bone graft materials and also as thin films to improve the integration of biomedical implant devices within skeletal tissue. Pulsed laser deposition (PLD) can deposit crystalline HA with significant adhesion on titanium biomaterials. However, there are PLD processing constraints due to the complex physical and chemical interactions occurring simultaneously during PLD, which influence ablation plume formation and development. In this investigation PLD CAP films were engineered with a focus on novel decoupling of partial pressure of H2O (g) ( PH2O ) from total background pressure, in combination with substrate heat treatment and laser energy density control. Characterization of these films was performed with X-ray Diffraction, Scanning Electron Microscopy, Energy Dispersive X-ray Spectroscopy, Fourier Transform Infrared Spectroscopy, and Optical Profilometry. In vitro cellular adhesion testing was also performed using osteoblast (MC3T3) cell lines to evaluate adhesion of bone-forming cells on processed PLD CAP samples. Preferred a-axis orientation films were deposited in H2O (g) saturated atmospheres with reduced laser fluence (< 4 J/cm2). Crystalline HA/tetracalcium phosphate (TTCP) films were deposited in H2O ( g)-deficient atmospheres with higher laser fluence (> 3 J/cm 2). Varied PH2O resulted in control of biphasic HA/TTCP composition with increasing TTCP at lower PH2O . These were dense continuous films composed of micron-scale particles. Cellular adhesion assays did not demonstrate a significant difference between osteoblast adhesion density on HA films compared with biphasic HA/TTCP films. Room temperature PLD at varied PH2O combined with furnace heat treatment resulted in controlled variation in surface amplitude parameters including surface roughness (S a), root mean square (Sq), peak to valley height (St), and ten-point height ( Sz). These discontinuous films were composed of nano-scale particles and resulted in significant osteoblast adhesion compared to control samples or to PLD CAP films deposited on heated substrates. Surface amplitude parameters (Sa, Sq, St, and Sz) correlated with osteoblast adhesion. This new approach of control over H2O ( g) operating atmospheres enabled the deposition of unique PLD CAP films with potential use as thin films for biomedical implants or as regenerative bone graft materials. Keywords: hydroxyapatite, pulsed laser deposition, biomaterials.

Digestate as nutrient source for biomass production of sida, lucerne and maize

NASA Astrophysics Data System (ADS)

Bueno Piaz Barbosa, Daniela; Nabel, Moritz; Horsch, David; Tsay, Gabriela; Jablonowski, Nicolai

2014-05-01

Biogas as a renewable energy source is supported in many countries driven by climate and energy policies. Nowadays, Germany is the largest biogas producer in the European Union. A sustainable resource management has to be considered within this growing scenario of biogas production systems and its environmental impacts. In this respect, studies aiming to enhance the management of biogas residues, which represents a valuable source of nutrients and organic fertilization, are needed. Our objective was to evaluate the digestate (biogas residue after fermentation process) application as nutrient source for biomass production of three different plants: sida (Sida hermaphrodita - Malvaceae), lucerne (Medicago sativa - Fabaceae) and maize (Zea mays - Poaceae). The digestate was collected from an operating biogas facility (fermenter volume 2500m³, ADRW Natur Power GmbH & Co.KG Titz/Ameln, Germany) composed of maize silage as the major feedstock, and minor amounts of chicken manure, with a composition of 3,29% N; 1,07% P; 3,42% K; and 41,2% C. An arable field soil (Endogleyic Stagnosol) was collected from 0-30 cm depth and 5 mm sieved. The fertilizer treatments of the plants were established in five replicates including digestate (application amount equivalent to 40 t ha-1) and NPK fertilizer (application amount equivalent to 200:100:300 kg ha-1) applications, according to the recommended agricultural doses, and a control (no fertilizer application). The digestate and the NPK fertilizer were thoroughly mixed with the soil in a rotatory shaker for 30 min. The 1L pots were filled with the fertilized soil and the seedlings were transplanted and grown for 30 days under greenhouse conditions (16 h day/8 h night: 24ºC/18ºC; 60% air humidity). After harvesting, the leaf area was immediately measured, and the roots were washed to allow above and below-ground biomass determination. Subsequently, shoots and roots were dried at 60ºC for 48 hours. The biomass and leaf area of sida, lucerne and maize presented similar performance for both digestate and the NPK fertilizer applications, which were greater than the control, showing a positive fertilizing effect of the digestate for plant biomass production. Considering the biomass production obtained with the digestate application for sida, lucerne and maize, the results give support for further field experiments which aim to evaluate the fertilizing and conditioning effect of digestates.

Maximizing root/rhizosphere efficiency to improve crop productivity and nutrient use efficiency in intensive agriculture of China.

PubMed

Shen, Jianbo; Li, Chunjian; Mi, Guohua; Li, Long; Yuan, Lixing; Jiang, Rongfeng; Zhang, Fusuo

2013-03-01

Root and rhizosphere research has been conducted for many decades, but the underlying strategy of root/rhizosphere processes and management in intensive cropping systems remain largely to be determined. Improved grain production to meet the food demand of an increasing population has been highly dependent on chemical fertilizer input based on the traditionally assumed notion of 'high input, high output', which results in overuse of fertilizers but ignores the biological potential of roots or rhizosphere for efficient mobilization and acquisition of soil nutrients. Root exploration in soil nutrient resources and root-induced rhizosphere processes plays an important role in controlling nutrient transformation, efficient nutrient acquisition and use, and thus crop productivity. The efficiency of root/rhizosphere in terms of improved nutrient mobilization, acquisition, and use can be fully exploited by: (1) manipulating root growth (i.e. root development and size, root system architecture, and distribution); (2) regulating rhizosphere processes (i.e. rhizosphere acidification, organic anion and acid phosphatase exudation, localized application of nutrients, rhizosphere interactions, and use of efficient crop genotypes); and (3) optimizing root zone management to synchronize root growth and soil nutrient supply with demand of nutrients in cropping systems. Experiments have shown that root/rhizosphere management is an effective approach to increase both nutrient use efficiency and crop productivity for sustainable crop production. The objectives of this paper are to summarize the principles of root/rhizosphere management and provide an overview of some successful case studies on how to exploit the biological potential of root system and rhizosphere processes to improve crop productivity and nutrient use efficiency.

Evaluation of instrumentation systems in reducing E. faecalis from root canals: TF adaptive and ProTaper next versus single file systems.

PubMed

Karataş, Ertuğrul; Gültekin, Esra; Arslan, Hakan; Kirici, Damla Özsu; Alsancak, Meltem; Topçu, Meltem Çolak

2015-03-01

To compare the effect of the TF Adaptive, ProTaper Next, OneShape, WaveOne, Reciproc, (SAF) on the reduction of E. faecalis in experimentally infected root canals. 70 human mandibular incisor teeth with straight roots and single root canals were selected for this experiment and the root canals of the selected teeth were infected with E. faecalis. After contamination, all the root canals were randomly divided into 7 groups: control, ProTaper Next, TF Adaptive, SAF, WaveOne, Reciproc, and OneShape. After the irrigation procedures, samples were taken from root canals with paper points and incubated in blood agar plates. The colonies grown on the blood agar were counted and interpreted as colony forming units per milliliter. Analysis of results showed that all instrumentation systems were more effective in reducing the number of bacteria than the control (P<.001). The ProTaper Next, TF Adaptive, WaveOne, Reciproc, and OneShape systems were significantly more effective than the SAF system in reducing E. faecalis within the root canals (P<.001). All instrumentation systems used in this study provided a significant reduction in bacterial populations.

Endodontic implications of the variability of the root canal systems of posterior teeth.

PubMed

Biggs, J T; Benenati, F W

1995-01-01

Variations in the morphology of roots and root canal systems create challenges which the dental practitioner must be able to recognize. Endodontic therapy is predictable and successful only to the extent that the root canal system can be debrided, disinfected and sealed against future contamination. In order to accomplish these goals it is necessary to become familiar with the variability of the system we seek to treat.

Nitrate foraging by Arabidopsis roots is mediated by the transcription factor TCP20 through the systemic signaling pathway

PubMed Central

Guan, Peizhu; Wang, Rongchen; Nacry, Philippe; Breton, Ghislain; Kay, Steve A.; Pruneda-Paz, Jose L.; Davani, Ariea; Crawford, Nigel M.

2014-01-01

To compete for nutrients in diverse soil microenvironments, plants proliferate lateral roots preferentially in nutrient-rich zones. For nitrate, root foraging involves local and systemic signaling; however, little is known about the genes that function in the systemic signaling pathway. By using nitrate enhancer DNA to screen a library of Arabidopsis transcription factors in the yeast one-hybrid system, the transcription factor gene TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR1-20 (TCP20) was identified. TCP20, which belongs to an ancient, plant-specific gene family that regulates shoot, flower, and embryo development, was implicated in nitrate signaling by its ability to bind DNA in more than 100 nitrate-regulated genes. Analysis of insertion mutants of TCP20 showed that they had normal primary and lateral root growth on homogenous nitrate media but were impaired in preferential lateral root growth (root foraging) on heterogeneous media in split-root plates. Inhibition of preferential lateral root growth was still evident in the mutants even when ammonium was uniformly present in the media, indicating that the TCP20 response was to nitrate. Comparison of tcp20 mutants with those of nlp7 mutants, which are defective in local control of root growth but not in the root-foraging response, indicated that TCP20 function is independent of and distinct from NLP7 function. Further analysis showed that tcp20 mutants lack systemic control of root growth regardless of the local nitrate concentrations. These results indicate that TCP20 plays a key role in the systemic signaling pathway that directs nitrate foraging by Arabidopsis roots. PMID:25288754

Extension of the root-locus method to a certain class of fractional-order systems.

PubMed

Merrikh-Bayat, Farshad; Afshar, Mahdi; Karimi-Ghartemani, Masoud

2009-01-01

In this paper, the well-known root-locus method is developed for the special subset of linear time-invariant systems commonly known as fractional-order systems. Transfer functions of these systems are rational functions with polynomials of rational powers of the Laplace variable s. Such systems are defined on a Riemann surface because of their multi-valued nature. A set of rules for plotting the root loci on the first Riemann sheet is presented. The important features of the classical root-locus method such as asymptotes, roots condition on the real axis and breakaway points are extended to the fractional case. It is also shown that the proposed method can assess the closed-loop stability of fractional-order systems in the presence of a varying gain in the loop. Moreover, the effect of perturbation on the root loci is discussed. Three illustrative examples are presented to confirm the effectiveness of the proposed algorithm.

Enhanced top soil carbon stocks under organic farming.

PubMed

Gattinger, Andreas; Muller, Adrian; Haeni, Matthias; Skinner, Colin; Fliessbach, Andreas; Buchmann, Nina; Mäder, Paul; Stolze, Matthias; Smith, Pete; Scialabba, Nadia El-Hage; Niggli, Urs

2012-10-30

It has been suggested that conversion to organic farming contributes to soil carbon sequestration, but until now a comprehensive quantitative assessment has been lacking. Therefore, datasets from 74 studies from pairwise comparisons of organic vs. nonorganic farming systems were subjected to metaanalysis to identify differences in soil organic carbon (SOC). We found significant differences and higher values for organically farmed soils of 0.18 ± 0.06% points (mean ± 95% confidence interval) for SOC concentrations, 3.50 ± 1.08 Mg C ha(-1) for stocks, and 0.45 ± 0.21 Mg C ha(-1) y(-1) for sequestration rates compared with nonorganic management. Metaregression did not deliver clear results on drivers, but differences in external C inputs and crop rotations seemed important. Restricting the analysis to zero net input organic systems and retaining only the datasets with highest data quality (measured soil bulk densities and external C and N inputs), the mean difference in SOC stocks between the farming systems was still significant (1.98 ± 1.50 Mg C ha(-1)), whereas the difference in sequestration rates became insignificant (0.07 ± 0.08 Mg C ha(-1) y(-1)). Analyzing zero net input systems for all data without this quality requirement revealed significant, positive differences in SOC concentrations and stocks (0.13 ± 0.09% points and 2.16 ± 1.65 Mg C ha(-1), respectively) and insignificant differences for sequestration rates (0.27 ± 0.37 Mg C ha(-1) y(-1)). The data mainly cover top soil and temperate zones, whereas only few data from tropical regions and subsoil horizons exist. Summarizing, this study shows that organic farming has the potential to accumulate soil carbon.

Synopsis of Precision Landing and Hazard Avoidance (PL&HA) Capabilities for Space Exploration

NASA Technical Reports Server (NTRS)

Robertson, Edward A.

2017-01-01

Until recently, robotic exploration missions to the Moon, Mars, and other solar system bodies relied upon controlled blind landings. Because terrestrial techniques for terrain relative navigation (TRN) had not yet been evolved to support space exploration, landing dispersions were driven by the capabilities of inertial navigation systems combined with surface relative altimetry and velocimetry. Lacking tight control over the actual landing location, mission success depended on the statistical vetting of candidate landing areas within the predicted landing dispersion ellipse based on orbital reconnaissance data, combined with the ability of the spacecraft to execute a controlled landing in terms of touchdown attitude, attitude rates, and velocity. In addition, the sensors, algorithms, and processing technologies required to perform autonomous hazard detection and avoidance in real time during the landing sequence were not yet available. Over the past decade, NASA has invested substantial resources on the development, integration, and testing of autonomous precision landing and hazard avoidance (PL&HA) capabilities. In addition to substantially improving landing accuracy and safety, these autonomous PL&HA functions also offer access to targets of interest located within more rugged and hazardous terrain. Optical TRN systems are baselined on upcoming robotic landing missions to the Moon and Mars, and NASA JPL is investigating the development of a comprehensive PL&HA system for a Europa lander. These robotic missions will demonstrate and mature PL&HA technologies that are considered essential for future human exploration missions. PL&HA technologies also have applications to rendezvous and docking/berthing with other spacecraft, as well as proximity navigation, contact, and retrieval missions to smaller bodies with microgravity environments, such as asteroids.

Integration of root phenes revealed by intensive phenotyping of root system architecture, anatomy, and physiology in cereals

NASA Astrophysics Data System (ADS)

York, Larry

2015-04-01

Food insecurity is among the greatest challenges humanity will face in the 21st century. Agricultural production in much of the world is constrained by the natural infertility of soil which restrains crops from reaching their yield potential. In developed nations, fertilizer inputs pollute air and water and contribute to climate change and environmental degradation. In poor nations low soil fertility is a primary constraint to food security and economic development. Water is almost always limiting crop growth in any system. Increasing the acquisition efficiency of soil resources is one method by which crop yields could be increased without the use of more fertilizers or irrigation. Cereals are the most widely grown crops, both in terms of land area and in yield, so optimizing uptake efficiency of cereals is an important goal. Roots are the primary interface between plant and soil and are responsible for the uptake of soil resources. The deployment of roots in space and time comprises root system architecture (RSA). Cereal RSA is a complex phenotype that aggregates many elemental phenes (elemental units of phenotype). Integration of root phenes will be determined by interactions through their effects on soil foraging and plant metabolism. Many architectural, metabolic, and physiological root phenes have been identified in maize, including: nodal root number, nodal root growth angle, lateral root density, lateral root length, aerenchyma, cortical cell size and number, and nitrate uptake kinetics. The utility of these phenes needs confirmation in maize and in other cereals. The maize root system is composed of an embryonic root system and nodal roots that emerge in successive whorls as the plant develops, and is similar to other cereals. Current phenotyping platforms often ignore the inner whorls and instead focus on the most visible outer whorls after excavating a maize root crown from soil. Here, an intensive phenotyping platform evaluating phenes of all nodal root whorls in maize is introduced, and field work demonstrated how the variation within the root crown has functional significance for nitrogen acquisition. Nodal root number was decomposed to more elemental phenes including the number of nodes and the occupancies of each node. Simulations demonstrated that root systems forming fewer nodal roots and with delayed emergence perform well in low nitrogen soils. Nitrate uptake kinetics (NUK) also varied within the maize root system, and simulations showing a lack of interaction between NUK and RSA reflects a knowledge gap in the costs of NUK at the molecular level. Finally, maize RSA among hybrids from different era periods over the past 100 years suggests evolution towards more nitrogen efficient root phene states. This work will be discussed within the context of next-generation root phenotyping of cereals, the dilemma between extensive and intensive phenotyping, and the need for linking across scales and methods.

Tumor targeting profiling of hyaluronan-coated lipid based-nanoparticles

NASA Astrophysics Data System (ADS)

Mizrahy, Shoshy; Goldsmith, Meir; Leviatan-Ben-Arye, Shani; Kisin-Finfer, Einat; Redy, Orit; Srinivasan, Srimeenakshi; Shabat, Doron; Godin, Biana; Peer, Dan

2014-03-01

Hyaluronan (HA), a naturally occurring high Mw (HMw) glycosaminoglycan, has been shown to play crucial roles in cell growth, embryonic development, healing processes, inflammation, and tumor development and progression. Low Mw (LMw, <10 kDa) HA has been reported to provoke inflammatory responses, such as induction of cytokines, chemokines, reactive nitrogen species and growth factors. Herein, we prepared and characterized two types of HA coated (LMw and HMw) lipid-based targeted and stabilized nanoparticles (tsNPs) and tested their binding to tumor cells expressing the HA receptor (CD44), systemic immunotoxicity, and biodistribution in tumor bearing mice. In vitro, the Mw of the surface anchored HA had a significant influence on the affinity towards CD44 on B16F10 murine melanoma cells. LMw HA-tsNPs exhibited weak binding, while binding of tsNPs coated with HMw HA was characterized by high binding. Both types of tsNPs had no measured effect on cytokine induction in vivo following intravenous administration to healthy C57BL/6 mice suggesting no immune activation. HMw HA-tsNPs showed enhanced circulation time and tumor targeting specificity, mainly by accumulating in the tumor and its vicinity compared with LMw HA-tsNPs. Finally, we show that methotrexate (MTX), a drug commonly used in cancer chemotherapy, entrapped in HMw HA-tsNPs slowly diffused from the particles with a half-life of 13.75 days, and improved the therapeutic outcome in a murine B16F10 melanoma model compared with NPs suggesting an active cellular targeting beyond the Enhanced Permeability and Retention (EPR) effect. Taken together, these findings have major implications for the use of high molecular weight HA in nanomedicine as a selective and safe active cellular targeting moiety.Hyaluronan (HA), a naturally occurring high Mw (HMw) glycosaminoglycan, has been shown to play crucial roles in cell growth, embryonic development, healing processes, inflammation, and tumor development and progression. Low Mw (LMw, <10 kDa) HA has been reported to provoke inflammatory responses, such as induction of cytokines, chemokines, reactive nitrogen species and growth factors. Herein, we prepared and characterized two types of HA coated (LMw and HMw) lipid-based targeted and stabilized nanoparticles (tsNPs) and tested their binding to tumor cells expressing the HA receptor (CD44), systemic immunotoxicity, and biodistribution in tumor bearing mice. In vitro, the Mw of the surface anchored HA had a significant influence on the affinity towards CD44 on B16F10 murine melanoma cells. LMw HA-tsNPs exhibited weak binding, while binding of tsNPs coated with HMw HA was characterized by high binding. Both types of tsNPs had no measured effect on cytokine induction in vivo following intravenous administration to healthy C57BL/6 mice suggesting no immune activation. HMw HA-tsNPs showed enhanced circulation time and tumor targeting specificity, mainly by accumulating in the tumor and its vicinity compared with LMw HA-tsNPs. Finally, we show that methotrexate (MTX), a drug commonly used in cancer chemotherapy, entrapped in HMw HA-tsNPs slowly diffused from the particles with a half-life of 13.75 days, and improved the therapeutic outcome in a murine B16F10 melanoma model compared with NPs suggesting an active cellular targeting beyond the Enhanced Permeability and Retention (EPR) effect. Taken together, these findings have major implications for the use of high molecular weight HA in nanomedicine as a selective and safe active cellular targeting moiety. Electronic supplementary information (ESI) available. See DOI: 10.1039/c3nr06102g

Extrapolation of forest community types with a geographic information system

Treesearch

W.K. Clatterbuck; J. Gregory

1991-01-01

A geographic information system (GIS) was used to project eight forest community types from a 1,190-acre (482-ha) intensively sampled area to an unsampled 19,887-acre (8,054-ha) adjacent area with similar environments on the Western Highland Rim of Tennessee. Both physiographic and vegetative parameters were used to distinguish, extrapolate, and map communities.

A conceptual approach to approximate tree root architecture in infinite slope models

NASA Astrophysics Data System (ADS)

Schmaltz, Elmar; Glade, Thomas

2016-04-01

Vegetation-related properties - particularly tree root distribution and coherent hydrologic and mechanical effects on the underlying soil mantle - are commonly not considered in infinite slope models. Indeed, from a geotechnical point of view, these effects appear to be difficult to be reproduced reliably in a physically-based modelling approach. The growth of a tree and the expansion of its root architecture are directly connected with both intrinsic properties such as species and age, and extrinsic factors like topography, availability of nutrients, climate and soil type. These parameters control four main issues of the tree root architecture: 1) Type of rooting; 2) maximum growing distance to the tree stem (radius r); 3) maximum growing depth (height h); and 4) potential deformation of the root system. Geometric solids are able to approximate the distribution of a tree root system. The objective of this paper is to investigate whether it is possible to implement root systems and the connected hydrological and mechanical attributes sufficiently in a 3-dimensional slope stability model. Hereby, a spatio-dynamic vegetation module should cope with the demands of performance, computation time and significance. However, in this presentation, we focus only on the distribution of roots. The assumption is that the horizontal root distribution around a tree stem on a 2-dimensional plane can be described by a circle with the stem located at the centroid and a distinct radius r that is dependent on age and species. We classified three main types of tree root systems and reproduced the species-age-related root distribution with three respective mathematical solids in a synthetic 3-dimensional hillslope ambience. Thus, two solids in an Euclidian space were distinguished to represent the three root systems: i) cylinders with radius r and height h, whilst the dimension of latter defines the shape of a taproot-system or a shallow-root-system respectively; ii) elliptic paraboloids represent a cordate-root-system with radius r, height h and a constant, species-independent curvature. This procedure simplifies the classification of tree species into the three defined geometric solids. In this study we introduce a conceptual approach to estimate the 2- and 3-dimensional distribution of different tree root systems, and to implement it in a raster environment, as it is used in infinite slope models. Hereto we used the PCRaster extension in a python framework. The results show that root distribution and root growth are spatially reproducible in a simple raster framework. The outputs exhibit significant effects for a synthetically generated slope on local scale for equal time-steps. The preliminary results depict an initial step to develop a vegetation module that can be coupled with hydro-mechanical slope stability models. This approach is expected to yield a valuable contribution to the implementation of vegetation-related properties, in particular effects of root-reinforcement, into physically-based approaches using infinite slope models.

Carbon, water and energy balances of an Eucalyptus grandis plantation in Brazil: effects of clearcut and stand age

NASA Astrophysics Data System (ADS)

Nouvellon, Y.; Stape, J. L.; Le Maire, G.; Bonnefond, J.; Rocha, H.; Campoe, O.; Bouillet, J.; Laclau, J.

2013-12-01

Eucalypt grandis plantations in Brazil are among the most productive forests of the world, reaching mean annual increments of about 50 m3/ha/yr over short (6 yr) rotations. These high productions are generally associated with high water-use, but little is known on the effects of management practices on their carbon (C), water and energy budgets. We investigated the effects of stand age and clear cutting on the C and water balances through continuous eddy-covariance measurements of latent (LE), sensible heat (H), and CO2 fluxes over a 5 yrs period encompassing two successive rotations: 2 yrs before and 3 yrs after clear cutting and replanting. The water table depth, soil temperature and soil water content (SWC, till 10 m deep) were also continuously monitored. Leaf area index (LAI) was measured at 3-month intervals, and the soil exploration by fine roots was investigated. For the last 2 yrs before clearcutting the first rotation, LAI was ~3.5 and fine roots were found down to a depth of 16 m. No percolation was observed below 5 m, and the 5-10 m soil layer was water-depleted. Actual evapotranspiration (AET) was approximately equal to annual precipitation (1350 mm). H was very low, except during some dry events characterized by sharp increases in the bowen ratio (H/LE). Clearcut resulted in an increase in soil temperature and H, and a strong decrease in AET, allowing gravitational water to reach 6, 8 and 10 m depths about 1.5, 2.5, and 3.5 months after clearcutting, respectively, in this sandy soil. From the clearcut (Oct 2009) to the end of the first rainy season (May 2010), the water table had raised from -18.5 to -15 m. The third year after clearcutting and replanting, AET was higher than rainfall, leading to soil water-depletion till 10 m deep. This rapid depletion of soil water was consistent with the fast exploration of the soil by fine roots (root front at 6-7 m deep at age 1 yr) and the fast increase in LAI (reaching 5 at age 2.5 yr). Clearcutting turned the forest from a strong C sink (NEP of ~1 tC/ha/month) to a C source (NEP decreased down to ~ -1.6 tC/ha/month during replanting, about 1 month after the clearcut), but the plantation rapidly turned back to a C sink (C neutrality (NEP = 0) reached 7 months after clearcutting, and then NEP was always positive) due the rapid increase in LAI. The water balance of these eucalypt plantations is thus characterized by three successive phases: 1) the first year of the rotation, AETrainfall, resulting in water depletion in soil layers down to a depth of 10 m, and 3) from age 3 yrs to the end of the rotation, AET=rainfall. Our results suggest that process based models should take into account soil water dynamics in very deep soil layers to make reliable predictions of the effects of forest disturbances on C and water fluxes in deep tropical soils.

Air lateral root pruning affects longleaf pine seedling root system morphology

Treesearch

Shi-Jean Susana Sung; Dave Haywood

2016-01-01

Longleaf pine (Pinus palustris) seedlings were cultured with air lateral root pruning (side-vented containers, VT) or without (solid-walled containers, SW). Seedling root system morphology and growth were assessed before planting and 8 and 14 months after planting. Although VT seedlings had greater root collar diameter than the SW before planting,...

Root growth and physiology of potted and field-grown trembling aspen exposed to tropospheric ozone

Treesearch

M.D. Coleman; R.E. Dickson; J.G. Isebrands; D.F. Karnosky

1996-01-01

We studied root growth and respiration of potted plants and field-grown aspen trees (Populus tremuloides Michx.) exposed to ambient or twice-ambient ozone. Root dry weight of potted plants decreased up to 45% after 12 weeks of ozone treatment, and root system respiration decreased by 27%. The ozone-induced decrease in root system respiration of...

Ha-ras(val12) induces HSP70b transcription via the HSE/HSF1 system, but HSP70b expression is suppressed in Ha-ras(val12)-transformed cells.

PubMed

Stanhill, A; Levin, V; Hendel, A; Shachar, I; Kazanov, D; Arber, N; Kaminski, N; Engelberg, D

2006-03-09

Heat shock proteins (Hsps) are overexpressed in many tumors, but are downregulated in some tumors. To check for a direct effect of Ha-Ras(val12) on HSP70 transcription, we transiently expressed the oncoprotein in Rat1 fibroblasts and monitored its effect on HSP70b promoter-driven reporter gene. We show that expression of Ha-Ras(val12) induced this promoter. Promoter analysis via systematic deletions and point mutations revealed that Ha-Ras(val12) induces HSP70b transcription via heat shock elements (HSEs). Also, Ha-Ras(val12) induction of HSE-mediated transcription was dramatically reduced in HSF1-/- cells. Yet, residual effect of Ha-Ras(val12) that was still measured in HSF1-/- cells suggests that some of the Ha-Ras(val12) effect is Hsf1-independent. When HSF1-/- cells, stably expressing Ha-Ras(val12), were grown on soft agar only small colonies were formed suggesting a role for heat shock factor 1 (Hsf1) in Ha-Ras(val12)-mediated transformation. Although Ha-ras(Val12) seems to be an inducer of HSP70's expression, we found that in Ha-ras(Val12-)transformed fibroblasts expression of this gene is suppressed. This suppression is correlated with higher sensitivity of Ha-ras(val12)-transformed cells to heat shock. We suggest that Ha-ras(Val12) is involved in Hsf1 activation, thereby inducing the cellular protective response. Cells that repress this response are perhaps those that acquire the capability to further proliferate and become transformed clones.

Proliferation and ajmalicine biosynthesis of Catharanthus roseus (L). G. Don adventitious roots in self-built temporary immersion system

NASA Astrophysics Data System (ADS)

Phuc, Vo Thanh; Trung, Nguyen Minh; Thien, Huynh Tri; Tien, Le Thi Thuy

2017-09-01

Periwinkle (Catharanthus roseus (L.) G. Don) is a medicinal plant containing about 130 types of alkaloids that have important pharmacological effects. Ajmalicine in periwinkle root is an antihypertensive drug used in treatment of high blood pressure. Adventitious roots obtained from periwinkle leaves of in vitro shoots grew well in quarter-strength MS medium supplemented with 0.3 mg/l IBA and 20 g/l sucrose. Dark condition was more suitable for root growth than light. However, callus formation also took place in addition to the growth of adventitious roots. Temporary immersion system was applied in the culture of adventitious roots in order to reduce the callus growth rate formed in shake flask cultures. The highest growth index of roots was achieved using the system with 5-min immersion every 45 min (1.676 ± 0.041). The roots cultured in this system grew well without callus formation. Ajmalicine content was highest in the roots cultured with 5-min immersion every 180 min (950 μg/g dry weight).

Increasing water productivity, nitrogen economy, and grain yield of rice by water saving irrigation and fertilizer-N management.

PubMed

Aziz, Omar; Hussain, Saddam; Rizwan, Muhammad; Riaz, Muhammad; Bashir, Saqib; Lin, Lirong; Mehmood, Sajid; Imran, Muhammad; Yaseen, Rizwan; Lu, Guoan

2018-06-01

The looming water resources worldwide necessitate the development of water-saving technologies in rice production. An open greenhouse experiment was conducted on rice during the summer season of 2016 at Huazhong Agricultural University, Wuhan, China, in order to study the influence of irrigation methods and nitrogen (N) inputs on water productivity, N economy, and grain yield of rice. Two irrigation methods, viz. conventional irrigation (CI) and "thin-shallow-moist-dry" irrigation (TSMDI), and three levels of nitrogen, viz. 0 kg N ha -1 (N 0 ), 90 kg N ha -1 (N 1 ), and 180 kg N ha -1 (N 2 ), were examined with three replications. Study data indicated that no significant water by nitrogen interaction on grain yield, biomass, water productivity, N uptake, NUE, and fertilizer N balance was observed. Results revealed that TSMDI method showed significantly higher water productivity and irrigation water applications were reduced by 17.49% in TSMDI compared to CI. Thus, TSMDI enhanced root growth and offered significantly greater water saving along with getting more grain yield compared to CI. Nitrogen tracer ( 15 N) technique accurately assessed the absorption and distribution of added N in the soil crop environment and divulge higher nitrogen use efficiency (NUE) influenced by TSMDI. At the same N inputs, the TSMDI was the optimal method to minimize nitrogen leaching loss by decreasing water leakage about 18.63%, which are beneficial for the ecological environment.

Effect of synthetic and natural water-absorbing soil amendments on photosynthesis characteristics and tuber nutritional quality of potato in a semi-arid region.

PubMed

Xu, Shengtao; Zhang, Lei; McLaughlin, Neil B; Mi, Junzhen; Chen, Qin; Liu, Jinghui

2016-02-01

The effect of water-absorbing soil amendments on photosynthesis characteristics and tuber nutritional quality was investigated in a field experiment in a semi-arid region in northern China in 2010-2012. Treatments included two synthetic water-absorbing amendments, potassium polyacrylate (PAA) and polyacrylamide (PAM), and one natural amendment, humic acid (HA), both as single amendments and compound amendments (HA combined with PAA or PAM), and a no amendment control. Soil amendments had a highly significant effect (P ≤ 0.01) on photosynthesis characteristics, dry biomass, crop root/shoot (R/S) ratio and tuber nutritional quality. They improved both dry biomass above ground and dry biomass underground in the whole growing season by 4.6-31.2 and 1.1-83.1% respectively in all three years. Crop R/S ratio was reduced in the early growing season by 2.0-29.4% and increased in the later growing season by 2.3-32.6%. Soil amendments improved leaf soil plant analysis development value, net photosynthesis rate, stomatal conductance and transpiration rate by 1.4-17.0, 5.1-45.9, 2.4-90.6 and 2.0-22.6% respectively and reduced intercellular CO2 concentration by 2.1-19.5% in all three years. Amendment treatment with PAM + HA always had the greatest effect on photosynthesis characteristics and tuber nutritional quality among all amendment treatments and thus merits further research. © 2015 Society of Chemical Industry.

Motion representation of the long fingers: a proposal for the definitions of new anatomical frames.

PubMed

Coupier, Jérôme; Moiseev, Fédor; Feipel, Véronique; Rooze, Marcel; Van Sint Jan, Serge

2014-04-11

Despite the availability of the International Society of Biomechanics (ISB) recommendations for the orientation of anatomical frames, no consensus exists about motion representations related to finger kinematics. This paper proposes novel anatomical frames for motion representation of the phalangeal segments of the long fingers. A three-dimensional model of a human forefinger was acquired from a non-pathological fresh-frozen hand. Medical imaging was used to collect phalangeal discrete positions. Data processing was performed using a customized software interface ("lhpFusionBox") to create a specimen-specific model and to reconstruct the discrete motion path. Five examiners virtually palpated two sets of landmarks. These markers were then used to build anatomical frames following two methods: a reference method following ISB recommendations and a newly-developed method based on the mean helical axis (HA). Motion representations were obtained and compared between examiners. Virtual palpation precision was around 1mm, which is comparable to results from the literature. The comparison of the two methods showed that the helical axis method seemed more reproducible between examiners especially for secondary, or accessory, motions. Computed Root Mean Square distances comparing methods showed that the ISB method displayed a variability 10 times higher than the HA method. The HA method seems to be suitable for finger motion representation using discrete positions from medical imaging. Further investigations are required before being able to use the methodology with continuous tracking of markers set on the subject's hand. Copyright © 2014 Elsevier Ltd. All rights reserved.

Total glucosides of paeony (TGP) inhibits the production of inflammatory cytokines in oral lichen planus by suppressing the NF-κB signaling pathway.

PubMed

Wang, Yanni; Zhang, Han; Du, Guanhuan; Wang, Yufeng; Cao, Tianyi; Luo, Qingqiong; Chen, Junjun; Chen, Fuxiang; Tang, Guoyao

2016-07-01

Total glucosides of paeony (TGP) is a bioactive compound extracted from paeony roots and has been widely used to ameliorate inflammation in several autoimmune and inflammatory diseases. However, the anti-inflammatory effect of TGP on oral lichen planus (OLP), a chronic inflammatory oral condition characterized by T-cell infiltration and abnormal epithelial keratinization cycle remains unclear. In this study, we found that TLR4 was highly expressed and activation of the NF-κB signaling pathway was obviously observed in the OLP tissues. Moreover, there was significant higher mRNA expression of inflammatory cytokines interleukin-6 (IL-6) and tumor necrosis factor-α (TNF-α) in OLP keratinocytes than normal oral epithelial keratinocytes. With the help of the cell culture model by stimulating the keratinocyte HaCaT cells with lipopolysaccharides (LPS), we mimicked the local inflammatory environment of OLP. And we further confirmed that TGP could inhibit LPS-induced production of IL-6 and TNF-α in HaCaT cells via a dose-dependent manner. TGP treatment decreased the phosphorylation of IκBα and NF-κB p65 proteins, thus leading to less nuclear translocation of NF-κB p65 in HaCaT cells. Therefore, our data suggested that TGP may be a new potential candidate for the therapy of OLP. Copyright © 2016 Elsevier B.V. All rights reserved.

Modelling the root system architecture of Poaceae. Can we simulate integrated traits from morphological parameters of growth and branching?

PubMed

Pagès, Loïc; Picon-Cochard, Catherine

2014-10-01

Our objective was to calibrate a model of the root system architecture on several Poaceae species and to assess its value to simulate several 'integrated' traits measured at the root system level: specific root length (SRL), maximum root depth and root mass. We used the model ArchiSimple, made up of sub-models that represent and combine the basic developmental processes, and an experiment on 13 perennial grassland Poaceae species grown in 1.5-m-deep containers and sampled at two different dates after planting (80 and 120 d). Model parameters were estimated almost independently using small samples of the root systems taken at both dates. The relationships obtained for calibration validated the sub-models, and showed species effects on the parameter values. The simulations of integrated traits were relatively correct for SRL and were good for root depth and root mass at the two dates. We obtained some systematic discrepancies that were related to the slight decline of root growth in the last period of the experiment. Because the model allowed correct predictions on a large set of Poaceae species without global fitting, we consider that it is a suitable tool for linking root traits at different organisation levels. © 2014 INRA. New Phytologist © 2014 New Phytologist Trust.

A complete system for 3D reconstruction of roots for phenotypic analysis.

PubMed

Kumar, Pankaj; Cai, Jinhai; Miklavcic, Stanley J

2015-01-01

Here we present a complete system for 3D reconstruction of roots grown in a transparent gel medium or washed and suspended in water. The system is capable of being fully automated as it is self calibrating. The system starts with detection of root tips in root images from an image sequence generated by a turntable motion. Root tips are detected using the statistics of Zernike moments on image patches centred on high curvature points on root boundary and Bayes classification rule. The detected root tips are tracked in the image sequence using a multi-target tracking algorithm. Conics are fitted to the root tip trajectories using a novel ellipse fitting algorithm which weighs the data points by its eccentricity. The conics projected from the circular trajectory have a complex conjugate intersection which are image of the circular points. Circular points constraint the image of the absolute conics which are directly related to the internal parameters of the camera. The pose of the camera is computed from the image of the rotation axis and the horizon. The silhouettes of the roots and camera parameters are used to reconstruction the 3D voxel model of the roots. We show the results of real 3D reconstruction of roots which are detailed and realistic for phenotypic analysis.

7 CFR 201.56-11 - Knotweed family, Polygonaceae.

Code of Federal Regulations, 2010 CFR

2010-01-01

...) Germination habit: Epigeal dicot. (2) Food reserves: Cotyledons, starchy endosperm. (3) Shoot system: The... development within the test period. (4) Root system: A primary root, with secondary roots developing within... conducting tissue. (ii) Malformed, such as markedly shortened, curled, or thickened. (iii) Watery. (4) Root...

7 CFR 201.56-11 - Knotweed family, Polygonaceae.

Code of Federal Regulations, 2011 CFR

2011-01-01

...) Germination habit: Epigeal dicot. (2) Food reserves: Cotyledons, starchy endosperm. (3) Shoot system: The... development within the test period. (4) Root system: A primary root, with secondary roots developing within... conducting tissue. (ii) Malformed, such as markedly shortened, curled, or thickened. (iii) Watery. (4) Root...

The Tennessee study: factors affecting treatment outcome and healing time following nonsurgical root canal treatment.

PubMed

Azim, A A; Griggs, J A; Huang, G T-J

2016-01-01

To determine factors that may influence treatment outcome and healing time following root canal treatment. Root filled and restored teeth by pre-doctoral students were included in this study. Teeth/roots were followed-up regularly, and treatment outcome was evaluated at every follow-up appointment (healed, healing, uncertain or unsatisfactory). Host (age, immune condition, pulp/periapical diagnosis, tooth/root type, location and anatomy) and treatment factors (master apical file size, apical extension, voids and density of root filling) were recorded from patient dental records. Univariate, bivariate and multivariate analyses were performed to determine the impact of the factors on treatment outcomes and healing times. A total of 422 roots from 291 teeth met the inclusion criteria with a mean follow-up period of 2 years. The preoperative pulp condition, procedural errors during treatment, apical extension and density of root fillings significantly affected the treatment outcome. The average time required for a periapical lesion to heal was 11.78 months. The healing time increased in patients with compromised healing, patients older than 40 years, roots with Weine type II root canal systems, root canal systems prepared to a master apical file size <35, and roots with overextended fillings (P < 0.1). Multiple host and treatment factors affected the healing time and outcome of root canal treatment. Follow-up protocols should consider these factors before concluding the treatment outcome: patient's age, immune condition, as well as roots with overextended fillings, root canal systems with smaller apical preparations (size <35) or roots with complex canal systems. Intervention may be recommended if the treatment quality was inadequate or if patients became symptomatic. © 2015 International Endodontic Journal. Published by John Wiley & Sons Ltd.

Design of novel multifunctional targeting nano-carrier drug delivery system based on CD44 receptor and tumor microenvironment pH condition.

PubMed

Chen, Daquan; Lian, Shengnan; Sun, Jingfang; Liu, Zongliang; Zhao, Feng; Jiang, Yongtao; Gao, Mingming; Sun, Kaoxiang; Liu, Wanhui; Fu, Fenghua

2016-01-01

In this study, to develop a multifunctional targeting nano-carrier drug delivery system for cancer therapy, the novel pH-sensitive ketal based oligosaccharides of hyaluronan (oHA) conjugates were synthesized by chemical conjugation of hydrophobic menthone 1,2-glycerol ketal (MGK) to the backbone of oHA with the histidine as the linker of proton sponge effect. The multifunctional oHA conjugates, oHA-histidine-MGK (oHM) carried the pH-sensitive MGK as hydrophobic moieties and oHA as the target of CD44 receptor. The oHM could self-assemble to nano-sized spherical shape with the average diameters of 128.6 nm at pH 7.4 PBS conditions. The oHM nanoparticles (oHMN) could release encapsulated curcumin (Cur) with 82.6% at pH 5.0 compared with 49.3% at pH 7.4. The results of cytotoxicity assay indicated that encapsulated Cur in oHMN (Cur-oHMN) were stable and have less toxicity compared to Cur suspension. The anti-tumor efficacy in vivo suggested that Cur-oHMN suppressed tumor growth most efficiently. These results present the promising potential of oHMN as a stable and effective nano-sized pH-sensitive drug delivery system for cancer treatment.

Mesoporous silica nanoparticle-based intelligent drug delivery system for bienzyme-responsive tumour targeting and controlled release.

PubMed

Zhang, Yang; Xu, Juan

2018-01-01

This paper proposes a novel type of multifunctional envelope-type mesoporous silica nanoparticle (MSN) to achieve cancer cell targeting and drug-controlled release. In this system, MSNs were first modified by active targeting moiety hyaluronic acid (HA) for breast cancer cell targeting and hyaluronidases (Hyal)-induced intracellular drug release. Then gelatin, a proteinaceous biopolymer, was grafted onto the MSNs to form a capping layer via glutaraldehyde-mediated cross-linking. To shield against unspecific uptake of cells and prolong circulation time, the nanoparticles were further decorated with poly(ethylene glycol) polymers (PEG) to obtain MSN@HA-gelatin-PEG (MHGP). Doxorubicin (DOX), as a model drug, was loaded into PEMSN to assess the breast cancer cell targeting and drug release behaviours. In vitro study revealed that PEG chains protect the targeting ligand and shield against normal cells. After reaching the breast cancer cells, MMP-2 overpressed by cells hydrolyses gelatin layer to deshield PEG and switch on the function of HA. As a result, DOX-loaded MHGP was selectively trapped by cancer cells through HA receptor-mediated endocytosis and subsequently release DOX due to Hyal-catalysed degradation of HA. This system presents successful bienzyme-responsive targeting drug delivery in an optimal fashion and provides potential applications for targeted cancer therapy.

Estimation of runoff mitigation by morphologically different cover crop root systems

NASA Astrophysics Data System (ADS)

Yu, Yang; Loiskandl, Willibald; Kaul, Hans-Peter; Himmelbauer, Margarita; Wei, Wei; Chen, Liding; Bodner, Gernot

2016-07-01

Hydrology is a major driver of biogeochemical processes underlying the distinct productivity of different biomes, including agricultural plantations. Understanding factors governing water fluxes in soil is therefore a key target for hydrological management. Our aim was to investigate changes in soil hydraulic conductivity driven by morphologically different root systems of cover crops and their impact on surface runoff. Root systems of twelve cover crop species were characterized and the corresponding hydraulic conductivity was measured by tension infiltrometry. Relations of root traits to Gardner's hydraulic conductivity function were determined and the impact on surface runoff was estimated using HYDRUS 2D. The species differed in both rooting density and root axes thickness, with legumes distinguished by coarser axes. Soil hydraulic conductivity was changed particularly in the plant row where roots are concentrated. Specific root length and median root radius were the best predictors for hydraulic conductivity changes. For an intensive rainfall simulation scenario up to 17% less rainfall was lost by surface runoff in case of the coarsely rooted legumes Melilotus officinalis and Lathyrus sativus, and the densely rooted Linum usitatissimum. Cover crops with coarse root axes and high rooting density enhance soil hydraulic conductivity and effectively reduce surface runoff. An appropriate functional root description can contribute to targeted cover crop selection for efficient runoff mitigation.

How does undergraduate college biology students' level of understanding, in regard to the role of the seed plant root system, relate to their level of understanding of photosynthesis?

NASA Astrophysics Data System (ADS)

Njeng'ere, James Gicheha

This research study investigated how undergraduate college biology students' level of understanding of the role of the seed plant root system relates to their level of understanding of photosynthesis. This research was conducted with 65 undergraduate non-majors biology who had completed 1 year of biology at Louisiana State University in Baton Rouge and Southeastern Louisiana University in Hammond. A root probe instrument was developed from some scientifically acceptable propositional statements about the root system, the process of photosynthesis, as well as the holistic nature of the tree. These were derived from research reviews of the science education and the arboriculture literature. This was administered to 65 students selected randomly from class lists of the two institutions. Most of the root probe's items were based on the Live Oak tree. An in-depth, clinical interview-based analysis was conducted with 12 of those tested students. A team of root experts participated by designing, validating and answering the same questions that the students were asked. A "systems" lens as defined by a team of college instructors, root experts (Shigo, 1991), and this researcher was used to interpret the results. A correlational coefficient determining students' level of understanding of the root system and their level of understanding of the process of photosynthesis was established by means of Pearson's r correlation (r = 0.328) using the SAS statistical analysis (SAS, 1987). From this a coefficient of determination (r2 = 0.104) was determined. Students' level of understanding of the Live Oak root system (mean score 5.94) was not statistically different from their level of understanding of the process of photosynthesis (mean score 5.54) as assessed by the root probe, t (129) = 0.137, p > 0.05 one tailed-test. This suggests that, to some degree, level of the root system limits level of understanding of photosynthesis and vice versa. Analysis of quantitative and qualitative data revealed that students who applied principles of systems thinking performed better than those who did not. Students' understanding of the root system of the Live Oak tree was hindered by understanding of, plant food, the nonwoody roots, and the tree as a system.

Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots

PubMed Central

Passot, Sixtine; Gnacko, Fatoumata; Moukouanga, Daniel; Lucas, Mikaël; Guyomarc’h, Soazig; Ortega, Beatriz Moreno; Atkinson, Jonathan A.; Belko, Marème N.; Bennett, Malcolm J.; Gantet, Pascal; Wells, Darren M.; Guédon, Yann; Vigouroux, Yves; Verdeil, Jean-Luc; Muller, Bertrand; Laplaze, Laurent

2016-01-01

Pearl millet plays an important role for food security in arid regions of Africa and India. Nevertheless, it is considered an orphan crop as it lags far behind other cereals in terms of genetic improvement efforts. Breeding pearl millet varieties with improved root traits promises to deliver benefits in water and nutrient acquisition. Here, we characterize early pearl millet root system development using several different root phenotyping approaches that include rhizotrons and microCT. We report that early stage pearl millet root system development is characterized by a fast growing primary root that quickly colonizes deeper soil horizons. We also describe root anatomical studies that revealed three distinct types of lateral roots that form on both primary roots and crown roots. Finally, we detected significant variation for two root architectural traits, primary root lenght and lateral root density, in pearl millet inbred lines. This study provides the basis for subsequent genetic experiments to identify loci associated with interesting early root development traits in this important cereal. PMID:27379124

A role for the root cap in root branching revealed by the non-auxin probe naxillin.

PubMed

De Rybel, Bert; Audenaert, Dominique; Xuan, Wei; Overvoorde, Paul; Strader, Lucia C; Kepinski, Stefan; Hoye, Rebecca; Brisbois, Ronald; Parizot, Boris; Vanneste, Steffen; Liu, Xing; Gilday, Alison; Graham, Ian A; Nguyen, Long; Jansen, Leentje; Njo, Maria Fransiska; Inzé, Dirk; Bartel, Bonnie; Beeckman, Tom

2012-09-01

The acquisition of water and nutrients by plant roots is a fundamental aspect of agriculture and strongly depends on root architecture. Root branching and expansion of the root system is achieved through the development of lateral roots and is to a large extent controlled by the plant hormone auxin. However, the pleiotropic effects of auxin or auxin-like molecules on root systems complicate the study of lateral root development. Here we describe a small-molecule screen in Arabidopsis thaliana that identified naxillin as what is to our knowledge the first non-auxin-like molecule that promotes root branching. By using naxillin as a chemical tool, we identified a new function for root cap-specific conversion of the auxin precursor indole-3-butyric acid into the active auxin indole-3-acetic acid and uncovered the involvement of the root cap in root branching. Delivery of an auxin precursor in peripheral tissues such as the root cap might represent an important mechanism shaping root architecture.

A role for the root cap in root branching revealed by the non-auxin probe naxillin

PubMed Central

De Rybel, Bert; Audenaert, Dominique; Xuan, Wei; Overvoorde, Paul; Strader, Lucia C; Kepinski, Stefan; Hoye, Rebecca; Brisbois, Ronald; Parizot, Boris; Vanneste, Steffen; Liu, Xing; Gilday, Alison; Graham, Ian A; Nguyen, Long; Jansen, Leentje; Njo, Maria Fransiska; Inzé, Dirk; Bartel, Bonnie; Beeckman, Tom

2013-01-01

The acquisition of water and nutrients by plant roots is a fundamental aspect of agriculture and strongly depends on root architecture. Root branching and expansion of the root system is achieved through the development of lateral roots and is to a large extent controlled by the plant hormone auxin. However, the pleiotropic effects of auxin or auxin-like molecules on root systems complicate the study of lateral root development. Here we describe a small-molecule screen in Arabidopsis thaliana that identified naxillin as what is to our knowledge the first non-auxin-like molecule that promotes root branching. By using naxillin as a chemical tool, we identified a new function for root cap-specific conversion of the auxin precursor indole-3-butyric acid into the active auxin indole-3-acetic acid and uncovered the involvement of the root cap in root branching. Delivery of an auxin precursor in peripheral tissues such as the root cap might represent an important mechanism shaping root architecture. PMID:22885787

Influence of organic and inorganic sources of nutrients on the functional diversity of microbial communities in the vegetable cropping system of the Indo-Gangetic plains.

PubMed

Manjunath, Mallappa; Kumar, Upendra; Yadava, Raj Bahadur; Rai, Awadhesh Bahadur; Singh, Bijendra

2018-05-31

The aim of the present study was to assess the effects of different organic and inorganic fertilizers on the functional diversity of soil microbial community under a vegetable production system. The Biolog ® Eco-plate technique and indices, such as average well-colour development (AWCD), McIntosh and Shannon diversity were employed to study the diversity of soil microorganisms. The AWCD, i.e. overall utilization of carbon sources, suggested that different organic treatments had a significant impact on the metabolic activity of soil microorganisms. After 120h, the highest AWCD values were observed in poultry manure (2.5 t·ha -1 )+vermicompost (3.5 t·ha -1 ) (0.63) and farm yard manure (FYM) (10 t·ha -1 )+vermicompost (3.5 t·ha -1 ) (0.61). After 72h, the highest value of the McIntosh diversity index was recorded in poultry manure (2.5 t·ha -1 )+vermicompost (3.5 t·ha -1 ) (3.87), followed by poultry manure (2.5 t·ha -1 )+vermicompost (3.5 t·ha -1 )+biofertilizers (Azotobacter 500 g·ha -1 applied as seed treatment) (3.12). In the case of the Shannon diversity index, the highest values were noticed in organic treatments; however, there was no significant differences between organic and inorganic treatments. Biplot analysis showed a clear differentiation of organic treatments from the inorganic control. The amino acids, phenolics and polymer utilizing microorganisms were dominant in organic treatments. Inorganic control recorded the lowest values of the microbial diversity indices. Through this study, we have identified the best combination of organic nutrients, i.e. poultry manure (2.5 t·ha -1 )+vermicompost (3.5 t·ha -1 ) for the stimulation of metabolically active soil microbial communities. Copyright © 2018 Académie des sciences. Published by Elsevier Masson SAS. All rights reserved.

Induction of systemic resistance of benzothiadiazole and humic Acid in soybean plants against fusarium wilt disease.

PubMed

Abdel-Monaim, Montaser Fawzy; Ismail, Mamdoh Ewis; Morsy, Kadry Mohamed

2011-12-01

The ability of benzothiadiazole (BTH) and/or humic acid (HA) used as seed soaking to induce systemic resistance against a pathogenic strain of Fusarium oxysporum was examined in four soybean cultivars under greenhouse conditions. Alone and in combination the inducers were able to protect soybean plants against damping-off and wilt diseases compared with check treatment. These results were confirmed under field conditions in two different locations (Minia and New Valley governorates). The tested treatments significantly reduced damping-off and wilt diseases and increased growth parameters, except the number of branches per plant and also increased seed yield. Application of BTH (0.25 g/L) + HA (4 g/L) was the most potent in this respect. Soybean seed soaking in BTH + HA produced the highest activities of the testes of oxidative enzymes followed by BTH in the four soybean cultivars. HA treatment resulted in the lowest increases of these oxidative enzymes. Similar results were obtained with total phenol but HA increased total phenol more than did BTH in all tested cultivars.

The effect of four different irrigation systems in the removal of a root canal sealer.

PubMed

Grischke, J; Müller-Heine, A; Hülsmann, M

2014-09-01

The aim of this study was to compare the efficiency of sonic, ultrasonic, and hydrodynamic devices in the removal of a root canal sealer from the surface and from simulated irregularities of root canals. Fifty-three root canals with two standardized grooves in the apical and coronal parts of longitudinally split roots were covered with AH Plus root canal sealer. Compared were the effects of (control) syringe irrigation, (1) CanalBrush, (2) passive ultrasonic irrigation, (3) EndoActivator, and (4) RinsEndo on the removal of the sealer. The specimens were divided into four groups (N = 12) and one control group (N = 5) via randomization. The amount of remaining sealer in the root canal irregularities was evaluated under a microscope using a 4-grade scoring system, whereas the remaining sealer on the root canal surface was evaluated with a 7-grade scoring system. Passive ultrasonic irrigation is more effective than the other tested irrigation systems or syringe irrigation in removing sealer from root canal walls (p < 0.01). None of the techniques had a significant effect on cleaning the lateral grooves. Within the limitations of this study protocol ultrasonic irrigation shows a superior effect on sealer removal from the root canal surface during endodontic retreatment. Cleaning of lateral grooves seems not to be possible with one of the techniques investigated. Incomplete removal of root canal sealer during re-treatment may cause treatment failure. Passive Ultrasonic irrigation seems to be the most effective system to remove sealer from a root canal.

Use of Chenopodium murale L. transgenic hairy root in vitro culture system as a new tool for allelopathic assays.

PubMed

Mitić, Nevena; Dmitrović, Slavica; Djordjević, Mirka; Zdravković-Korać, Snežana; Nikolić, Radomirka; Raspor, Martin; Djordjević, Tatjana; Maksimović, Vuk; Zivković, Suzana; Krstić-Milošević, Dijana; Stanišić, Mariana; Ninković, Slavica

2012-08-15

We investigated Chenopodium murale transgenic hairy root in vitro culture system as a new tool for allelopathic assays. Transgenic hairy roots were induced by Agrobacterium rhizogenes A4M70GUS from roots, cotyledons, leaves, and internodes of C. murale seedlings. Roots were found to be the best target explants, providing transformation efficiency of up to 11.1%. Established hairy root clones differed in their morphology and growth potential. Molecular characterization of these clones was carried out by PCR, RT-PCR and histochemical GUS analyses. No differences in rol gene expression were observed. Liquid culture system of characterized hairy root clones was maintained for over 2 years. Six hairy root clones were selected for assaying the allelopathic effect of their growth medium against germination and seedling elongation of wheat and lettuce test plants. The inhibitory potential varied depending on the hairy root clone. Some transgenic clones showed significantly higher inhibition compared to wild-type roots. These results revealed that hairy roots as an independent system synthesize some bioactive substances with allelopathic activity and exude them into the growth medium. Concentrations of caffeic, ferulic and p-coumaric acids (0.07-2.85 μmol/L) identified by HPLC analysis in the growth media were at least 1000 times lower than the inhibitory active concentration (5 mmol/L) of pure grade phenolic acids, suggesting that they have a limited role in the allelopathic phenomena of C. murale. The presented hairy root system appears to be a suitable tool for further investigation of the potential and nature of root-mediated allelopathic interference of C. murale. Copyright © 2012 Elsevier GmbH. All rights reserved.