Measuring the Impact of Language-Learning Software on Test Performance of Chinese Learners of English

ERIC Educational Resources Information Center

Nicholes, Justin

2016-01-01

This classroom quasi-experiment aimed to learn if and to what degree supplementing classroom instruction with Rosetta Stone (RS), Tell Me More (TMM), Memrise (MEM), or ESL WOW (WOW) impacted high-stakes English test performance in areas of university-level writing, reading, speaking, listening, and grammar. Seventy-eight (N = 78) Chinese learners…

If You Meet the Buddha on the Road with a Rosetta Stone: A Dialogue on Strategies of Inquiry and the New Rhetoric.

ERIC Educational Resources Information Center

Murphy, Christina

1985-01-01

Presents a dialogue between two adherents of the process centered paradigm of rhetoric: one a "classicist" who sees art as the knowledge necessary for producing preconceived results by conscious, directed actions, and the other a "romantic," who sees art as "magical" inspiration. (HTH)

New Coke, Rosetta Stones, and Functional Data Analysis: Recommendations for Developing and Validating New Measures of Depression

ERIC Educational Resources Information Center

Santor, Darcy A.

2006-01-01

In this article, the author outlines six recommendations that may guide the continued development and validation of measures of depression. These are (a) articulate and revise a formal theory of signs and symptoms; (b) differentiate complex theoretical goals from pragmatic evaluation needs; (c) invest heavily in new methods and analytic models;…

Forgetting of Foreign-Language Skills: A Corpus-Based Analysis of Online Tutoring Software

ERIC Educational Resources Information Center

Ridgeway, Karl; Mozer, Michael C.; Bowles, Anita R.

2017-01-01

We explore the nature of forgetting in a corpus of 125,000 students learning Spanish using the Rosetta Stone® foreign-language instruction software across 48 lessons. Students are tested on a lesson after its initial study and are then retested after a variable time lag. We observe forgetting consistent with power function decay at a rate that…

A Multiple Case Study Analysis of Digital Preservation Techniques Across Government, Private, and Public Service Organizations

DTIC Science & Technology

2008-03-01

capture archived encoded data. A black basalt slab with strange inscriptions on it, the Rosetta Stone was unearthed in July 1799 by Napoleon’s army...the bitstream. When you start thinking about 1s and 0s and when you start thinking about fiber optics, its just either on or off. So there is a

Polarization Observations of the Total Solar Eclipse of August 21, 2017

NASA Astrophysics Data System (ADS)

Burkepile, J.; Boll, A.; Casini, R.; de Toma, G.; Elmore, D. F.; Gibson, K. L.; Judge, P. G.; Mitchell, A. M.; Penn, M.; Sewell, S. D.; Tomczyk, S.; Yanamandra-Fisher, P. A.

2017-12-01

A total solar eclipse offers ideal sky conditions for viewing the solar corona. Light from the corona is composed of three components: the E-corona, made up of spectral emission lines produced by ionized elements in the corona; the K-corona, produced by photospheric light that is Thomson scattered by coronal electrons; and the F-corona, produced by sunlight scattered from dust particles in the near Sun environment and in interplanetary space. Polarized white light observations of the corona provide a way of isolating the K-corona to determine its structure, brightness, and density. This work focuses on broadband white light polarization observations of the corona during the upcoming solar eclipse from three different instruments. We compare coronal polarization brightness observations of the August 21, 2017 total solar eclipse from the NCAR/High Altitude Observatory (HAO) Rosetta Stone experiment using the 4-D Technology PolarCam camera with the two Citizen PACA_CATE17Pol telescopes that will acquire linear polarization observations of the eclipse and the NCAR/HAO K-Cor white light coronagraph observations from the Mauna Loa Solar Observatory in Hawaii. This comparison includes a discussion of the cross-calibration of the different instruments and reports the results of the coronal polarization brightness and electron density of the corona. These observations will be compared with results from previous coronal measurements taken at different phases of the solar cycle. In addition, we report on the performance of the three different polarimeters. The 4-D PolarCam uses a linear polarizer array, PACA_CATE17Pol uses a nematic liquid crystal retarder in a single beam configuration and K-Cor uses a pair of ferroelectric liquid crystal retarders in a dual-beam configuration. The use of the 4-D PolarCam camera in the Rosetta Stone experiment is to demonstrate the technology for acquiring high cadence polarization measurements. The Rosetta Stone experiment is funded through the NASA award NNH16ZDA001N-ISE. The Citizen Science approach to measuring the polarized solar corona during the eclipse is funded through NASA award NNX17AH76G. The NCAR Mauna Loa Solar Observatory is funded by the National Science Foundation.

Statistical analysis of dust signals observed by ROSINA/COPS onboard of the Rosetta spacecraft at comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Tzou, Chia-Yu; altwegg, kathrin; Bieler, Andre; Calmonte, Ursina; Gasc, Sébastien; Le Roy, Léna; Rubin, Martin

2016-10-01

ROSINA is the in situ Rosetta Orbiter Spectrometer for Ion and Neutral Analysis on board of Rosetta, one of the corner stone missions of the European Space Agency (ESA) to land and orbit the Jupiter family comet 67P/Churyumov-Gerasimenko (67P). ROSINA consists of two mass spectrometers and a pressure sensor. The Reflectron Time of Flight Spectrometer (RTOF) and the Double Focusing Mass Spectrometer (DFMS) complement each other in mass and time resolution.The Comet Pressure Sensor (COPS) provides density measurements of the neutral molecules in the cometary coma of 67P. COPS has two gauges, a nude gauge that measures the total neutral density and a ram gauge that measures the dynamic pressure from the comet. Combining the two COPS is also capable of providing gas dynamic information such as gas velocity and gas temperature of the coma.While Rosetta started orbiting around 67P in August 2014, COPS observed diurnal and seasonal variations of the neutral gas density in the coma. Surprisingly, additional to these major density variation patterns, COPS occasionally observed small spikes in the density that are associated with dust. These dust signals can be interpreted as a result of cometary dust releasing volatiles while heated up near COPS. A statistical analysis of dust signals detected by COPS will be presented.

A Rosetta Stone Relating Conventions In Photo-Meson Partial Wave Analyses

DOE Office of Scientific and Technical Information (OSTI.GOV)

A.M. Sandorfi, B. Dey, A. Sarantsev, L. Tiator, R. Workman

2012-04-01

A new generation of complete experiments in pseudoscalar meson photo-production is being pursued at several laboratories. While new data are emerging, there is some confusion regarding definitions of asymmetries and the conventions used in partial wave analyses (PWA). We present expressions for constructing asymmetries as coordinate-system independent ratios of cross sections, along with the names used for these ratios by different PWA groups.

Ube2V2 Is a Rosetta Stone Bridging Redox and Ubiquitin Codes, Coordinating DNA Damage Responses.

PubMed

Zhao, Yi; Long, Marcus J C; Wang, Yiran; Zhang, Sheng; Aye, Yimon

2018-02-28

Posttranslational modifications (PTMs) are the lingua franca of cellular communication. Most PTMs are enzyme-orchestrated. However, the reemergence of electrophilic drugs has ushered mining of unconventional/non-enzyme-catalyzed electrophile-signaling pathways. Despite the latest impetus toward harnessing kinetically and functionally privileged cysteines for electrophilic drug design, identifying these sensors remains challenging. Herein, we designed "G-REX"-a technique that allows controlled release of reactive electrophiles in vivo. Mitigating toxicity/off-target effects associated with uncontrolled bolus exposure, G-REX tagged first-responding innate cysteines that bind electrophiles under true k cat / K m conditions. G-REX identified two allosteric ubiquitin-conjugating proteins-Ube2V1/Ube2V2-sharing a novel privileged-sensor-cysteine. This non-enzyme-catalyzed-PTM triggered responses specific to each protein. Thus, G-REX is an unbiased method to identify novel functional cysteines. Contrasting conventional active-site/off-active-site cysteine-modifications that regulate target activity, modification of Ube2V2 allosterically hyperactivated its enzymatically active binding-partner Ube2N, promoting K63-linked client ubiquitination and stimulating H2AX-dependent DNA damage response. This work establishes Ube2V2 as a Rosetta-stone bridging redox and ubiquitin codes to guard genome integrity.

ESA Unveils Its New Comet Chaser.

NASA Astrophysics Data System (ADS)

1999-07-01

The objective is to study one of these primordial objects at close quarters by placing a lander on its surface and chasing, with an orbiter, the comet for millions of kilometres through space. Comets - among the oldest (4.6 billion years!) and last altered objects in the solar system - are regarded as the building blocks from which the planets formed. Thus the Rosetta's discoveries will allow the scientists to learn more about birth and evolution of the planets and about the origin of life on the Earth. The final design of the Rosetta orbiter will be revealed for the first time at the Royal Society in London on 1 July when a 1:4 scale model will be unveiled by ESA's Director of Science, Prof.. Roger Bonnet. (The full size version of the spacecraft is 32 metres across, so large that it would stretch the entire width of a football pitch. Almost 90 of this is accounted for by the giant solar panels which are needed to provide electrical power in the dark depths of the Solar System). "Rosetta is a mission of major scientific importance," said Prof. Bonnet. "It will build on the discoveries made by Giotto and confirm ESA's leading role in the exploration of the Solar System and the Universe as a whole." The timing of this event has been chosen to coincide with the London meeting of the Rosetta Science Working Team and the second Earth flyby of the now non-operational Giotto spacecraft. In addition, the opening of the British Museum's 'Cracking Codes' Exhibition, for which the Rosetta Stone is the centrepiece, is set to take place on 10 July. The Rosetta mission. Rosetta is the third Cornerstone in ESA's 'Horizon 2000' long-term scientific programme. It will be launched by Ariane 5 rocket from Kourou spaceport in French Guiana in January 2003. In order to gain sufficient speed to reach the distant comet, Rosetta will require gravity assists from the Earth (twice) and Mars. After swinging around Mars in May 2005, Rosetta will return to Earth's vicinity in October 2005 and October 2007 before heading away from the Sun towards Comet Wirtanen. As it bounces around the Solar System, Rosetta will also make two excursions into the main asteroid belt, where it will obtain the first close-up images and information on two contrasting objects, 4979 Otawara and 140 Siwa. Scientists believe Otawara is less than 20 km across, whereas Siwa is probably 110 km in diameter, much larger than any asteroid which has so far been visited by spacecraft. Rosetta will fly to within 1,000 km of Otawara in July 2006, followed by a similar rendezvous with Siwa two years later. However, the most difficult phase of the mission will be the final rendezvous with the fast-moving comet (the foreseen date for the rendezvous manoeuvre is 27 November 2011, close approach is set for 20 May 2012 and orbit insertion around the nucleus is set for 28 May 2012). Thus, after a 5.3 billion km space odyssey, Rosetta will make first contact with Wirtanen about 675 million km from the Sun. At this distance, sunlight is 20 times weaker than on Earth, and the comet's nucleus will still be frozen and inactive. Once the navigation team are able to determine the comet's exact location from images returned by the spacecraft camera, a series of braking manoeuvres will allow Rosetta to match speed and direction with its target. After about seven months of edging closer, Rosetta will eventually close to within 2 km of Wirtanen's frozen nucleus. From its close orbit above the tiny nucleus, Rosetta will be able to send back the most detailed images and information ever obtained of a comet. When a suitable landing site has been chosen, about a month after global mapping starts, the orbiter will release a 100 kg lander onto the comet's solid surface. Touchdown must be quite slow - less than one metre per second - to allow for the almost negligible gravitational pull of the tiny nucleus. In order to ensure that the lander does not bounce and disappear into space, an anchoring harpoon will be fired into the surface immediately on impact. By this time, the warmth of the Sun will probably have begun to vapourise parts of the nucleus, initiating some form of surface outgassing. For a period of about a month, data from the lander's eight experiments will be relayed to Earth via the orbiter. They will send back unique information on the nature and composition of the nucleus. Samples for chemical analysis will be taken of the organic crust and ices to a depth of at least 20 cm. Other instruments will measure characteristics such as near-surface strength, density, texture, porosity and thermal properties. Meanwhile, as Comet Wirtanen approaches the Sun, the Rosetta orbiter will fly alongside it, mapping its surface and studying changes in its activity. As its icy nucleus evaporates, 12 experiments on the orbiter will map its surface and study the dust and gas particles it ejects. For the first time, scientists will be able to monitor at close quarters the dramatic changes which take place as a comet plunges sunwards at a speed of 46,000 kph. The stream of data will include a mass of new information about the comet's changes in behaviour as it approaches the Sun, including: * variations in the temperature of the nucleus, * changing intensity and location of gas and dust jets on the nucleus, * the amount of gas and dust emitted from the nucleus, * the size, composition and impact velocity of dust particles, * the nature of the comet's interaction with the charged particles of the solar wind. By mission's end in July 2013, Rosetta will have spent almost two years chasing the comet for millions of kilometres through space. It will also have returned a treasure trove of data, which will enable us to learn more about how the planets formed and where we came from. Why Rosetta? Space exploration is all about discovering the unknown. Just as, 200 years ago, the discovery of the Rosetta Stone eventually enabled Champollion to unravel the mysteries of ancient Egyptian hieroglyphics, so Rosetta will help scientists to unravel the mysteries of comets. Hieroglyphics were the building blocks of the Egyptian language. Comets are the most primitive objects in the Solar System, the building blocks from which the planets formed. Virtually unchanged after 4.6 billion years in the deep freeze of the outer Solar System, they still contain ices and dust from the original solar nebula. They also contain complex organic compounds which some scientists believe may have been the first building blocks for life on Earth. 200 years ago, the discovery of a slab of volcanic basalt near the Egyptian town of Rashid (Rosetta) led to a revolution in our understanding of the past. By comparing the inscriptions on the 'Rosetta Stone', historians were able to decipher Egyptian hieroglyphics for the first time. Just as the Rosetta Stone provided the key to an ancient civilisation, so the European Space Agency's Rosetta spacecraft will allow scientists to unlock the mysteries of the oldest building blocks of our Solar System - the comets. The legacy of Giotto. For centuries, comets have inspired awe and wonder. Many ancient civilisations saw them as portents of death and disaster, omens of great social and political upheavals. Shrouded in thin, luminous veils with tails streaming behind them, these 'long-haired stars' were given the name 'comets' by the ancient Greeks (the Greek word kome meant 'hair'). When ESA's Giotto spacecraft arrived at Halley's Comet in 1986, no one knew what a comet nucleus was really like. The problem was that it is impossible to see the solid heart of a comet from the Earth. As soon as the nucleus moves close enough to us for detailed observation, it is obscured from view by a shroud of gas and dust. The most popular theory about the nature of comets was put forward by American astronomer Fred Whipple, who believed they were like dirty snowballs - large chunks of water ice and dust mixed with ammonia, methane and carbon dioxide. As they approach the Sun, their outer ices begin to vapourise, releasing large amounts of dust and gas to form the surrounding coma and wispy tails. Today, largely thanks to data from Giotto and the Russian Vega spacecraft, we now know that Whipple's model was fairly accurate. A comet nucleus resembles a fluffy snowball, usually only a few kilometres across, coated with a crust of black (probably organic) material and spouting jets of vapourised ice. However, despite these advances, scientists want to learn more about these occasional visitors to the inner Solar System. Why is it important to study comets? Comets formed about 4.5 billion years ago, and so they are among the oldest, most primitive objects in our Solar System. Billions of these giant chunks of ice still linger in the depths of space, the remnants of a vast swarm of objects which once surrounded our Sun and eventually came together to form planets. During the early history of our planet, the Solar System was like a gigantic shooting gallery with comets and asteroids continually crashing into the Earth. Some of the water which makes up the oceans may have originated in these ancient comet collisions. Previous studies have shown that comets carry complex organic molecules, compounds which are rich in carbon, hydrogen, oxygen and nitrogen. Intriguingly, these are the elements, which make up nucleic acids and amino acids, essential ingredients for life as we know it. Did life on Earth begin with the help of cometary seeding? If so, it almost certainly began in a similar way somewhere else. Fortunately, comets rarely strike the Earth today. One of the most recent episodes which has been linked to a small comet occurred at Tunguska in Siberia in 1908. When the incoming object exploded in mid-air, trees were flattened for hundreds of kilometres around. Rosetta's target is the periodic Comet Wirtanen, a chunk of dirty ice less than 1 km across which orbits the Sun once every 5 and a half years. Wirtanen was chosen for the mission because it is much easier to reach than most comets and its path is predictable. Since its discovery in 1948, it has been well observed by ground-based instruments, so its orbit is well known. In recent years the comet's orbit has been altered by the gravitational pull of Jupiter so that it passes close to the Earth's orbit and never strays too far from the Sun. After multiple approaches to the Sun, Wirtanen has lost most of its volatile ices, so outgassing activity remains quite low. This will make it easier for the instruments on board the Rosetta orbiter and lander to image and study the comet's surface.

Concluding Remarks II

NASA Astrophysics Data System (ADS)

Ziółkowski, Janusz

2003-12-01

The program of the conference was prepared so well (thanks to the organizers) that we got complete and competent reviews in all important fields of high energy cosmic sources. It is not easy to select just a few topics and any choice will be, necessarily, arbitrary. I decided to make brief comments on cosmology, on gamma ray bursts and on X-ray flashes. My personal nomination for the hit of the conference goes this year to the ``Rosetta stone" of gamma ray bursts (term used by Elena Pian): GRB030329 = SN 2003dh.

Orbital period determination in an eclipsing dwarf nova HT Cas

NASA Astrophysics Data System (ADS)

Bąkowska, Karolina; Olech, Arkadiusz

2014-09-01

HT Cassiopeiae was discovered over seventy years ago (Hoffmeister 1943). Unfortunately, for 35 years this object did not receive any attention, until the eclipses of HT Cas were observed by Bond. After a first analysis, Patterson (1981) called HT Cas "a Rosetta stone among dwarf novae". Since then, the literature on this star is still growing, reaching several dozens of publications. We present an orbital period determination of HT Cas during the November 2010 super-outburst, but also during a longer time span, to check its stability.

[Relational database for urinary stone ambulatory consultation. Assessment of initial outcomes].

PubMed

Sáenz Medina, J; Páez Borda, A; Crespo Martinez, L; Gómez Dos Santos, V; Barrado, C; Durán Poveda, M

2010-05-01

To create a relational database for monitoring lithiasic patients. We describe the architectural details and the initial results of the statistical analysis. Microsoft Access 2002 was used as template. Four different tables were constructed to gather demographic data (table 1), clinical and laboratory findings (table 2), stone features (table 3) and therapeutic approach (table 4). For a reliability analysis of the database the number of correctly stored data was gathered. To evaluate the performance of the database, a prospective analysis was conducted, from May 2004 to August 2009, on 171 stone free patients after treatment (EWSL, surgery or medical) from a total of 511 patients stored in the database. Lithiasic status (stone free or stone relapse) was used as primary end point, while demographic factors (age, gender), lithiasic history, upper urinary tract alterations and characteristics of the stone (side, location, composition and size) were considered as predictive factors. An univariate analysis was conducted initially by chi square test and supplemented by Kaplan Meier estimates for time to stone recurrence. A multiple Cox proportional hazards regression model was generated to jointly assess the prognostic value of the demographic factors and the predictive value of stones characteristics. For the reliability analysis 22,084 data were available corresponding to 702 consultations on 511 patients. Analysis of data showed a recurrence rate of 85.4% (146/171, median time to recurrence 608 days, range 70-1758). In the univariate and multivariate analysis, none of the factors under consideration had a significant effect on recurrence rate (p=ns). The relational database is useful for monitoring patients with urolithiasis. It allows easy control and update, as well as data storage for later use. The analysis conducted for its evaluation showed no influence of demographic factors and stone features on stone recurrence.

Urban Soil Hydrology: bridging the data gap with a nationwide field study

NASA Astrophysics Data System (ADS)

Schifman, L. A.; Shuster, W.

2016-12-01

Urban communities generally rely on hydrologic models or tools for assessing suitable sites for green infrastructure. These rainfall-runoff models, e.g. National Stormwater Calculator (NSWC), query soil hydrologic information from national databases, e.g. Soil Survey Geographic Database (SSURGO), or are estimated via pedotransfer-based algorithms like USDA Rosetta. As part of urban soil hydrologic assessments we have collected soil textural and hydrologic data in 12 cities throughout the United States and compared these measurements to NSWC and SSURGO queried infiltration rates (Kunsat) and Rosetta-estimated drainage rates (Ksat and Kunsat). We found that soil hydrologic parameters obtained through pedotransfer functions and queries to soil databases are not representative of field-measured values (RMSE range from 6.2 to 15.2 for infiltration and from 13.2 to 16.3 for drainage). Although the NSWC queries SSURGO, we found that SSURGO overestimates infiltration and NSWC underestimates with MEs of 4.9, and -1.4, respectively. In Rosetta, we found that pedotransfer functions overestimated drainage rates (MEs 1.8 to 3.8). In an attempt to improve drainage estimates using Rosetta the soil texture was adjusted in soils with an apparent portion of finer sands. Here, sand included: very coarse, coarse, and medium sand, whereas silt included fine, and very fine sand and silt, with the justification that fine sands behave similarly to silt. These adjusted estimates resulted in generally underestimating drainage and still not suitable for use in planning for stormwater detention (e.g., infiltrative green infrastructure). With this work we highlight the importance of obtaining field measured values when assessing sites for green infrastructure planning instead of relying on estimates, as the discrepancies in sensitive parameters such as Kunsat and Ksat, implications for parameter selection in error propagation through rainfall-runoff models, and consequences for over- or under-design of stormwater control measures for detention.

Tiny Hiccups To Titanic Explosions: Tackling Transients in Anomalous X-ray Pulsars

NASA Astrophysics Data System (ADS)

Kaspi, Victoria

2006-09-01

Recently discovered transient events in Anomalous X-ray Pulsars (AXPs) may be a Rosetta Stone for understanding the persistent emission from magnetars. They also may hold the key to quantifying the number of magnetars in the Galaxy. Here we request Chandra TOO time to observe any AXP following a rare transient event, including a major outburst or a long-duration flare. Specifically, the requested observations will determine the pulsed fraction and spectral evolution of a transient AXP event as the source relaxes back to quiescence, in order to quantitatively test the "twisted magnetosphere" model for magnetars, and establish the basic phenomenology of transient AXP events.

TINY HICCUPS TO TITANIC EXPLOSIONS: Tackling Transients in Anomalous X-ray Pulsars

NASA Astrophysics Data System (ADS)

Kaspi, Victoria

2007-09-01

Recently discovered transient events in Anomalous X-ray Pulsars (AXPs) may be a Rosetta Stone for understanding the persistent emission from magnetars. They also may hold the key to quantifying the number of magnetars in the Galaxy. Here we request Chandra TOO time to observe any AXP following a rare transient event, including a major outburst or a long-duration flare. Specifically, the requested observations will determine the pulsed fraction and spectral evolution of a transient AXP event as the source relaxes back to quiescence, in order to quantitatively test the "twisted magnetosphere" model for magnetars, and establish the basic phenomenology of transient AXP events.

Hi-tech in space - Rosetta - a space sophisticate

NASA Astrophysics Data System (ADS)

2004-02-01

The European Space Agency’s Rosetta mission will be getting under way in February 2004. The Rosetta spacecraft will be pairing up with Comet 67P/Churyumov-Gerasimenko and accompanying it on its journey, investigating the comet’s composition and the dynamic processes at work as it flies sunwards. The spacecraft will even deposit a lander on the comet. “This will be our first direct contact with the surface of a comet,” said Dr Manfred Warhaut, Operations Manager for the Rosetta mission at ESA's European Space Operations Centre (ESOC) in Darmstadt, Germany. The trip is certainly not short: Rosetta will need ten years just to reach the comet. This places extreme demands on its hardware; when the probe meets up with the comet, all instruments must be fully operational, especially since it will have been in “hibernation” for 2 and a half years of its journey. During this ‘big sleep’, all systems, scientific instruments included, are turned off. Only the on-board computer remains active. Twelve cubic metres of technical wizardry Rosetta’s hardware fits into a sort of aluminium box measuring just 12 cubic metres. The scientific payload is mounted in the upper part, while the subsystems - on-board computer, transmitter and propulsion system - are housed below. The lander is fixed to the opposite side of the probe from the steerable antenna. As the spacecraft orbits the comet, the scientific instruments will at all times be pointed towards its surface; the antenna and solar panels will point towards the Earth and Sun respectively. For trajectory and attitude control and for the major braking manœuvres, Rosetta is equipped with 24 thrusters each delivering 10 N. That corresponds to the force needed here on Earth to hold a bag containing 10 apples. Rosetta sets off with 1650 kg of propellant on board, accounting for more than half its mass at lift-off. Just 20% of total mass is available for scientific purposes. So when developing the research instruments the same rule applied as for supermodels: make every gram count. The calculation seems to have worked out right: the main probe will be carrying 11 scientific instruments and the Rosetta lander a further ten. They will analyse the composition and structure of the comet’s nucleus and study its interaction with the solar wind and the interplanetary plasma. Rosetta - unplugged “To provide the probe with the power it needs in space, we have given it the biggest solar panels ever carried by a European satellite,” Manfred Warhaut explained. “ These cells are its only source of electricity.” They span 32 metres tip to tip while, at 64 m2 the surface area is comparable to that of a two-bedroom flat. The panels may be rotated through 180° to catch the maximum amount of sunlight. These dimensions are also essential because when Rosetta meets Churyumov-Gerasimenko it will be 675 million kilometres away from the Sun. At that distance solar radiation is very weak and the solar collectors will supply only 440 W of power - compared with 8000 W towards the end of the mission when the two companions come closest to the Sun (at some 150 million kilometres from our star distance). “The probe is also equipped with a set of four 10-amp-hour batteries to maintain power supply while Rosetta flies in the shadow of the comet.” Rosetta lander - standing on its own three legs The Rosetta lander is another of the mission’s technical highlights. Using its scientific instruments, its job will be to investigate the comet’s surface on location. Thanks to a mechanical arm, the lander will operate in a two-metre radius. The soft landing is a particular problem given the extremely weak gravitational force exerted by the very small comet nucleus; the lander, weighing in at 100 kg on Earth, will on the comet be as light as a sheet of paper . If there were the slightest recoil, it would bounce back uncontrollably like a rubber ball. To make sure this doesn’t happen, the lander’s three legs are equipped with special shock-absorbers which take up most of the kinetic energy. The legs are also fitted with ice pitons; these bore into the ground immediately on touchdown. At the same moment, the lander fires a harpoon to anchor it to the ground - an opportunity also to investigate the mechanical properties of the surface. “If everything goes according to plan, the mission results could well fundamentally expand our knowledge of comets, just as the Rosetta Stone, after which the probe is named, helped unravel the mystery of Egyptian hieroglyphics,” said Manfred Warhaut. For further information on Rosetta and ESA projects, please consult our portal at: http://www.esa.int/science or directly at http://www.esa.int/rosetta

The Rosetta video approach: An overview and lessons learned so far

NASA Astrophysics Data System (ADS)

Zender, J.; Schwehm, G.; Wilke, M.

2008-01-01

After an interplanetary cruise of 10 years, the Rosetta spacecraft and Philae lander, will arrive in 2014 at comet Churyomov-Gerasimenkov. All involved parties are aware of the knowledge decrease during these years and the potential complications that might arise during problem resolution before or during cometary operations. The Rosetta Science Operations Center (RSOC) supports the Rosetta orbiter experimenters in the preservation of their knowledge. The author will present the overall efforts that are done within the RSOC team to ensure the preservation of the existing information—address databases, documentation, etc.—but will emphasis on the effort to preserve existing experience using a video approach. The video approach included the visit of all orbiter experimenter teams for several days, executing interviews with engineers, technicians and scientists. During the interviews a table of content with attached keywords was generated. The final video was transferred into a computer readable form and connected with the table of content. We will present the methodology that was used to prepare and execute the interviews, to prepare the final video material and the storage and structure of the table of content and keyword. The experimenter interviews at their home institutes and the follow-up work are finished. The feedback we received so far from experimenters and the lessons learned from the interview team will be presented. In the meantime, the approach is continued during the Rosetta commissioning and interviews are executed after each instrument commissioning slot. The author will give an outlook of potential further usage of this approach.

An improved Rosetta pedotransfer function and evaluation in earth system models

NASA Astrophysics Data System (ADS)

Zhang, Y.; Schaap, M. G.

2017-12-01

Soil hydraulic parameters are often difficult and expensive to measure, leading to the pedotransfer functions (PTFs) an alternative to predict those parameters. Rosetta (Schaap et al., 2001, denoted as Rosetta1) are widely used PTFs, which is based on artificial neural network (ANN) analysis coupled with the bootstrap re-sampling method, allowing the estimation of van Genuchten water retention parameters (van Genuchten, 1980, abbreviated here as VG), saturated hydraulic conductivity (Ks), as well as their uncertainties. We present an improved hierarchical pedotransfer functions (Rosetta3) that unify the VG water retention and Ks submodels into one, thus allowing the estimation of uni-variate and bi-variate probability distributions of estimated parameters. Results show that the estimation bias of moisture content was reduced significantly. Rosetta1 and Posetta3 were implemented in the python programming language, and the source code are available online. Based on different soil water retention equations, there are diverse PTFs used in different disciplines of earth system modelings. PTFs based on Campbell [1974] or Clapp and Hornberger [1978] are frequently used in land surface models and general circulation models, while van Genuchten [1980] based PTFs are more widely used in hydrology and soil sciences. We use an independent global scale soil database to evaluate the performance of diverse PTFs used in different disciplines of earth system modelings. PTFs are evaluated based on different soil characteristics and environmental characteristics, such as soil textural data, soil organic carbon, soil pH, as well as precipitation and soil temperature. This analysis provides more quantitative estimation error information for PTF predictions in different disciplines of earth system modelings.

Incidence of kidney stones in kidney transplant recipients: A systematic review and meta-analysis

PubMed Central

Cheungpasitporn, Wisit; Thongprayoon, Charat; Mao, Michael A; Kittanamongkolchai, Wonngarm; Jaffer Sathick, Insara J; Dhondup, Tsering; Erickson, Stephen B

2016-01-01

AIM To evaluate the incidence and characteristics of kidney stones in kidney transplant recipients. METHODS A literature search was performed using MEDLINE, EMBASE, and Cochrane Database of Systematic Reviews from the inception of the databases through March 2016. Studies assessing the incidence of kidney stones in kidney transplant recipients were included. We applied a random-effects model to estimate the incidence of kidney stones. RESULTS Twenty one studies with 64416 kidney transplant patients were included in the analyses to assess the incidence of kidney stones after kidney transplantation. The estimated incidence of kidney stones was 1.0% (95%CI: 0.6%-1.4%). The mean duration to diagnosis of kidney stones after kidney transplantation was 28 ± 22 mo. The mean age of patients with kidney stones was 42 ± 7 years. Within reported studies, approximately 50% of kidney transplant recipients with kidney stones were males. 67% of kidney stones were calcium-based stones (30% mixed CaOx/CaP, 27%CaOx and 10%CaP), followed by struvite stones (20%) and uric acid stones (13%). CONCLUSION The estimated incidence of kidney stones in patients after kidney transplantation is 1.0%. Although calcium based stones are the most common kidney stones after transplantation, struvite stones (also known as “infection stones”) are not uncommon in kidney transplant recipients. These findings may impact the prevention and clinical management of kidney stones after kidney transplantation. PMID:28058231

STEM Summer Academy on the Navajo Reservation

NASA Astrophysics Data System (ADS)

Alexander, C. J.

2012-12-01

The US Rosetta Project is the NASA contribution to the International Rosetta Mission, an ESA cornerstone mission to comet Churyumov-Gerasimenko. While the project's outreach efforts span multi-media, and a variety of age and ethnic groups, a special emphasis has been made to find a way to provide meaningful outreach to the reservation communities. Because language preservation is an issue of urgent concern to the reservation communities, and because Rosetta, uniquely among NASA missions, has been named after the notion that keys to missing understanding of elements of the ancient past were found in the language on the original Rosetta stone, the US Rosetta Project has embarked upon outreach with a focus on STEM vocabulary in ancient US languages of the Navajo, Hopi, Ojibwe, and other tribal communities as the project expands. NASA image and science are used and described in the native language, alongside lay English and scientific English curriculum elements. Additionally, science (geology/chemistry/botany/physics) elements drawn from the reservation environment, including geomorphology, geochemistry, soil physics, are included and discussed in the native language as much as possible — with their analogs in other planetary environments (such as Mars). In this paper we will report on the most recent Summer Science Academy [2012], a four week summer course for middle school children, created in collaboration with teachers and administrators in the Chinle Unified School District. The concept of the Academy was initiated in 2011, and the first Academy was conducted shortly thereafter, in June 2011 with 14 children, 3 instructors, and a NASA teacher workshop. The community requested three topics: geology, astronomy, and botany. The 2012 Academy built on the curriculum already developed with more robust field trips, addressed to specific science topics, additional quantitative measurements and activities, with more written material for the cultural components from Navajo contributors. In 2012, the Academy was conducted with 45 children and 4 instructors. Following up on lessons learned in previous reports, it is clear that community involvement and buy-in is critical to the success of the program. This means that the US Rosetta Project modified its goals and curriculum to accommodate the teaching desires of teachers in the district, and the capabilities of the medicine men that agreed to participate. The use of NASA material and imagery can be shown to have a positive impact on the accessibility of the overall STEM material. Metrics used in the program will be discussed. Future work to extract STEM language elements to enhance the program will include organized Elder's Round Tables for discussion, and recording, of language with first speakers. Work on this project was supported by NASA at California Institute of Technology/Jet Propulsion Laboratory.

Comparative analysis of expert and machine-learning methods for classification of body cavity effusions in companion animals.

PubMed

Hotz, Christine S; Templeton, Steven J; Christopher, Mary M

2005-03-01

A rule-based expert system using CLIPS programming language was created to classify body cavity effusions as transudates, modified transudates, exudates, chylous, and hemorrhagic effusions. The diagnostic accuracy of the rule-based system was compared with that produced by 2 machine-learning methods: Rosetta, a rough sets algorithm and RIPPER, a rule-induction method. Results of 508 body cavity fluid analyses (canine, feline, equine) obtained from the University of California-Davis Veterinary Medical Teaching Hospital computerized patient database were used to test CLIPS and to test and train RIPPER and Rosetta. The CLIPS system, using 17 rules, achieved an accuracy of 93.5% compared with pathologist consensus diagnoses. Rosetta accurately classified 91% of effusions by using 5,479 rules. RIPPER achieved the greatest accuracy (95.5%) using only 10 rules. When the original rules of the CLIPS application were replaced with those of RIPPER, the accuracy rates were identical. These results suggest that both rule-based expert systems and machine-learning methods hold promise for the preliminary classification of body fluids in the clinical laboratory.

Evidence for the timing of sea-level events during MIS 3

NASA Astrophysics Data System (ADS)

Siddall, M.

2005-12-01

Four large sea-level peaks of millennial-scale duration occur during MIS 3. In addition smaller peaks may exist close to the sensitivity of existing methods to derive sea level during these periods. Millennial-scale changes in temperature during MIS 3 are well documented across much of the planet and are linked in some unknown, yet fundamental way to changes in ice volume / sea level. It is therefore highly likely that the timing of the sea level events during MIS 3 will prove to be a `Rosetta Stone' for understanding millennial scale climate variability. I will review observational and mechanistic arguments for the variation of sea level on Antarctic, Greenland and absolute time scales.

The Martian valley networks: Origin by niveo-fluvial processes

NASA Technical Reports Server (NTRS)

Rice, J. W., Jr.

1993-01-01

The valley networks may hold the key to unlocking the paleoclimatic history of Mars. These enigmatic landforms may be regarded as the Martian equivalent of the Rosetta Stone. Therefore, a more thorough understanding of their origin and evolution is required. However, there is still no consensus among investigators regarding the formation (runoff vs. sapping) of these features. Recent climatic modeling precludes warm (0 degrees C) globally averaged surface temperatures prior to 2 b.y. when solar luminosity was 25-30 percent less than present levels. This paper advocates snowmelt as the dominant process responsible for the formation of the dendritic valley networks. Evidence for Martian snowfall and subsequent melt has been discussed in previous studies.

Impact of stone density on outcomes in percutaneous nephrolithotomy (PCNL): an analysis of the clinical research office of the endourological society (CROES) pcnl global study database.

PubMed

Anastasiadis, Anastasios; Onal, Bulent; Modi, Pranjal; Turna, Burak; Duvdevani, Mordechai; Timoney, Anthony; Wolf, J Stuart; De La Rosette, Jean

2013-12-01

This study aimed to explore the relationship between stone density and outcomes of percutaneous nephrolithotomy (PCNL) using the Clinical Research Office of the Endourological Society (CROES) PCNL Global Study database. Patients undergoing PCNL treatment were assigned to a low stone density [LSD, ≤ 1000 Hounsfield units (HU)] or high stone density (HSD, > 1000 HU) group based on the radiological density of the primary renal stone. Preoperative characteristics and outcomes were compared in the two groups. Retreatment for residual stones was more frequent in the LSD group. The overall stone-free rate achieved was higher in the HSD group (79.3% vs 74.8%, p = 0.113). By univariate regression analysis, the probability of achieving a stone-free outcome peaked at approximately 1250 HU. Below or above this density resulted in lower treatment success, particularly at very low HU values. With increasing radiological stone density, operating time decreased to a minimum at approximately 1000 HU, then increased with further increase in stone density. Multivariate non-linear regression analysis showed a similar relationship between the probability of a stone-free outcome and stone density. Higher treatment success rates were found with low stone burden, pelvic stone location and use of pneumatic lithotripsy. Very low and high stone densities are associated with lower rates of treatment success and longer operating time in PCNL. Preoperative assessment of stone density may help in the selection of treatment modality for patients with renal stones.

InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite.

PubMed

Schenkelberg, Christian D; Bystroff, Christopher

2015-12-15

Modern biotechnical research is becoming increasingly reliant on computational structural modeling programs to develop novel solutions to scientific questions. Rosetta is one such protein modeling suite that has already demonstrated wide applicability to a number of diverse research projects. Unfortunately, Rosetta is largely a command-line-driven software package which restricts its use among non-computational researchers. Some graphical interfaces for Rosetta exist, but typically are not as sophisticated as commercial software. Here, we present InteractiveROSETTA, a graphical interface for the PyRosetta framework that presents easy-to-use controls for several of the most widely used Rosetta protocols alongside a sophisticated selection system utilizing PyMOL as a visualizer. InteractiveROSETTA is also capable of interacting with remote Rosetta servers, facilitating sophisticated protocols that are not accessible in PyRosetta or which require greater computational resources. InteractiveROSETTA is freely available at https://github.com/schenc3/InteractiveROSETTA/releases and relies upon a separate download of PyRosetta which is available at http://www.pyrosetta.org after obtaining a license (free for academic use). © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

A “Rosetta Stone” for metazoan zooplankton: DNA barcode analysis of species diversity of the Sargasso Sea (Northwest Atlantic Ocean)

NASA Astrophysics Data System (ADS)

Bucklin, Ann; Ortman, Brian D.; Jennings, Robert M.; Nigro, Lisa M.; Sweetman, Christopher J.; Copley, Nancy J.; Sutton, Tracey; Wiebe, Peter H.

2010-12-01

Species diversity of the metazoan holozooplankton assemblage of the Sargasso Sea, Northwest Atlantic Ocean, was examined through coordinated morphological taxonomic identification of species and DNA sequencing of a ˜650 base-pair region of mitochondrial cytochrome oxidase I (mtCOI) as a DNA barcode (i.e., short sequence for species recognition and discrimination). Zooplankton collections were made from the surface to 5,000 meters during April, 2006 on the R/V R.H. Brown. Samples were examined by a ship-board team of morphological taxonomists; DNA barcoding was carried out in both ship-board and land-based DNA sequencing laboratories. DNA barcodes were determined for a total of 297 individuals of 175 holozooplankton species in four phyla, including: Cnidaria (Hydromedusae, 4 species; Siphonophora, 47); Arthropoda (Amphipoda, 10; Copepoda, 34; Decapoda, 9; Euphausiacea, 10; Mysidacea, 1; Ostracoda, 27); and Mollusca (Cephalopoda, 8; Heteropoda, 6; Pteropoda, 15); and Chaetognatha (4). Thirty species of fish (Teleostei) were also barcoded. For all seven zooplankton groups for which sufficient data were available, Kimura-2-Parameter genetic distances were significantly lower between individuals of the same species (mean=0.0114; S.D. 0.0117) than between individuals of different species within the same group (mean=0.3166; S.D. 0.0378). This difference, known as the barcode gap, ensures that mtCOI sequences are reliable characters for species identification for the oceanic holozooplankton assemblage. In addition, DNA barcodes allow recognition of new or undescribed species, reveal cryptic species within known taxa, and inform phylogeographic and population genetic studies of geographic variation. The growing database of "gold standard" DNA barcodes serves as a Rosetta Stone for marine zooplankton, providing the key for decoding species diversity by linking species names, morphology, and DNA sequence variation. In light of the pivotal position of zooplankton in ocean food webs, their usefulness as rapid responders to environmental change, and the increasing scarcity of taxonomists, the use of DNA barcodes is an important and useful approach for rapid analysis of species diversity and distribution in the pelagic community.

The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite.

PubMed

Adolf-Bryfogle, Jared; Dunbrack, Roland L

2013-01-01

The Rosetta Molecular Modeling suite is a command-line-only collection of applications that enable high-resolution modeling and design of proteins and other molecules. Although extremely useful, Rosetta can be difficult to learn for scientists with little computational or programming experience. To that end, we have created a Graphical User Interface (GUI) for Rosetta, called the PyRosetta Toolkit, for creating and running protocols in Rosetta for common molecular modeling and protein design tasks and for analyzing the results of Rosetta calculations. The program is highly extensible so that developers can add new protocols and analysis tools to the PyRosetta Toolkit GUI.

Incidence and characteristics of kidney stones in patients with horseshoe kidney: A systematic review and meta-analysis

PubMed Central

Pawar, Aditya S.; Thongprayoon, Charat; Cheungpasitporn, Wisit; Sakhuja, Ankit; Mao, Michael A.; Erickson, Stephen B.

2018-01-01

Introduction: The horseshoe kidney (HSK) is the most common type of renal fusion anomaly. The incidence and characteristics of kidney stones in patients with HSK are not well studied. The aim of this meta-analysis was to evaluate the incidence and types of kidney stones in patients with HSK. Methods: A systematic literature search was performed using MEDLINE, EMBASE, and Cochrane Database of Systematic Reviews from the databases' inception through November 2016. Studies assessing the incidence and types of kidney stones in patients with HSK were included. We applied a random-effects model to estimate the incidence of kidney stones. The study protocol was registered with PROSPERO (International Prospective Register of Systematic Reviews; no. CRD42016052037). Results: A total of 14 observational studies with 943 patients (522 adults and 421 pediatric) with HSK were enrolled. The estimated pooled incidence of kidney stones was 36% (95% confidence interval [CI], 15%–59%) in adults with the HSK. Kidney stones were less common in pediatric patients with HSK with an estimated pooled incidence of 3% (95% CI, 2%–5%). The mean age of adult stone formers with HSK was 44.9 ± 6.2 years, and 75% were males. Within reported studies, 89.2% of kidney stones were calcium-based stones (64.2% calcium oxalate [CaOx], 18.8% calcium phosphate [CaP], and 6.2% mixed CaOx/CaP), followed by struvite stones (4.2%), uric acid stones (3.8%), and others (2.8%). Conclusions: Kidney stones are very common in adult patients with HSK with an estimated incidence of 36%. Calcium-based stones are the most prevalent kidney stones in adults with HSKs. These findings may impact the prevention and clinical management of kidney stones in patients with HSK. PMID:29416282

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta.

PubMed

Chaudhury, Sidhartha; Lyskov, Sergey; Gray, Jeffrey J

2010-03-01

PyRosetta is a stand-alone Python-based implementation of the Rosetta molecular modeling package that allows users to write custom structure prediction and design algorithms using the major Rosetta sampling and scoring functions. PyRosetta contains Python bindings to libraries that define Rosetta functions including those for accessing and manipulating protein structure, calculating energies and running Monte Carlo-based simulations. PyRosetta can be used in two ways: (i) interactively, using iPython and (ii) script-based, using Python scripting. Interactive mode contains a number of help features and is ideal for beginners while script-mode is best suited for algorithm development. PyRosetta has similar computational performance to Rosetta, can be easily scaled up for cluster applications and has been implemented for algorithms demonstrating protein docking, protein folding, loop modeling and design. PyRosetta is a stand-alone package available at http://www.pyrosetta.org under the Rosetta license which is free for academic and non-profit users. A tutorial, user's manual and sample scripts demonstrating usage are also available on the web site.

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

PubMed Central

Chaudhury, Sidhartha; Lyskov, Sergey; Gray, Jeffrey J.

2010-01-01

Summary: PyRosetta is a stand-alone Python-based implementation of the Rosetta molecular modeling package that allows users to write custom structure prediction and design algorithms using the major Rosetta sampling and scoring functions. PyRosetta contains Python bindings to libraries that define Rosetta functions including those for accessing and manipulating protein structure, calculating energies and running Monte Carlo-based simulations. PyRosetta can be used in two ways: (i) interactively, using iPython and (ii) script-based, using Python scripting. Interactive mode contains a number of help features and is ideal for beginners while script-mode is best suited for algorithm development. PyRosetta has similar computational performance to Rosetta, can be easily scaled up for cluster applications and has been implemented for algorithms demonstrating protein docking, protein folding, loop modeling and design. Availability: PyRosetta is a stand-alone package available at http://www.pyrosetta.org under the Rosetta license which is free for academic and non-profit users. A tutorial, user's manual and sample scripts demonstrating usage are also available on the web site. Contact: pyrosetta@graylab.jhu.edu PMID:20061306

Determining protein function and interaction from genome analysis

DOEpatents

Eisenberg, David; Marcotte, Edward M.; Thompson, Michael J.; Pellegrini, Matteo; Yeates, Todd O.

2004-08-03

A computational method system, and computer program are provided for inferring functional links from genome sequences. One method is based on the observation that some pairs of proteins A' and B' have homologs in another organism fused into a single protein chain AB. A trans-genome comparison of sequences can reveal these AB sequences, which are Rosetta Stone sequences because they decipher an interaction between A' and B. Another method compares the genomic sequence of two or more organisms to create a phylogenetic profile for each protein indicating its presence or absence across all the genomes. The profile provides information regarding functional links between different families of proteins. In yet another method a combination of the above two methods is used to predict functional links.

Assigning protein functions by comparative genome analysis protein phylogenetic profiles

DOEpatents

Pellegrini, Matteo; Marcotte, Edward M.; Thompson, Michael J.; Eisenberg, David; Grothe, Robert; Yeates, Todd O.

2003-05-13

A computational method system, and computer program are provided for inferring functional links from genome sequences. One method is based on the observation that some pairs of proteins A' and B' have homologs in another organism fused into a single protein chain AB. A trans-genome comparison of sequences can reveal these AB sequences, which are Rosetta Stone sequences because they decipher an interaction between A' and B. Another method compares the genomic sequence of two or more organisms to create a phylogenetic profile for each protein indicating its presence or absence across all the genomes. The profile provides information regarding functional links between different families of proteins. In yet another method a combination of the above two methods is used to predict functional links.

Serendipity: Accidental Discoveries in Science

NASA Astrophysics Data System (ADS)

Roberts, Royston M.

1989-06-01

Many of the things discovered by accident are important in our everyday lives: Teflon, Velcro, nylon, x-rays, penicillin, safety glass, sugar substitutes, and polyethylene and other plastics. And we owe a debt to accident for some of our deepest scientific knowledge, including Newton's theory of gravitation, the Big Bang theory of Creation, and the discovery of DNA. Even the Rosetta Stone, the Dead Sea Scrolls, and the ruins of Pompeii came to light through chance. This book tells the fascinating stories of these and other discoveries and reveals how the inquisitive human mind turns accident into discovery. Written for the layman, yet scientifically accurate, this illuminating collection of anecdotes portrays invention and discovery as quintessentially human acts, due in part to curiosity, perserverance, and luck.

Challenges of archiving science data from long duration missions: the Rosetta case

NASA Astrophysics Data System (ADS)

Heather, David

2016-07-01

Rosetta is the first mission designed to orbit and land on a comet. It consists of an orbiter, carrying 11 science experiments, and a lander, called 'Philae', carrying 10 additional instruments. Rosetta was launched on 2 March 2004, and arrived at the comet 67P/Churyumov-Gerasimenko on 6 August 2014. During its long journey, Rosetta has completed flybys of the Earth and Mars, and made two excursions to the main asteroid belt to observe (2867) Steins and (21) Lutetia. On 12 November 2014, the Philae probe soft landed on comet 67P/Churyumov-Gerasimenko, the first time in history that such an extraordinary feat has been achieved. After the landing, the Rosetta orbiter followed the comet through its perihelion in August 2015, and will continue to accompany 67P/Churyumov-Gerasimenko as it recedes from the Sun until the end of the mission. There are significant challenges in managing the science archive of a mission such as Rosetta. The first data were returned from Rosetta more than 10 years ago, and there have been flybys of several planetary bodies, including two asteroids from which significant science data were returned by many of the instruments. The scientific applications for these flyby data can be very different to those taken during the main science phase at the comet, but there are severe limitations on the changes that can be applied to the data pipelines managed by the various science teams as resources are scarce. The priority is clearly on maximising the potential science from the comet phase, so data formats and pipelines have been designed with that in mind, and changes limited to managing issues found during official archiving authority and independent science reviews. In addition, in the time that Rosetta has been operating, the archiving standards themselves have evolved. All Rosetta data are archived following version 3 of NASA's Planetary Data System (PDS) Standards. Currently, new and upcoming planetary science missions are delivering data following the new 'PDS4' standards, which are using a very different format and require significant changes to the archive itself to manage. There are no plans at ESA to convert the data to PDS4 formats, but the community may need this to be completed in the long term if we are to realise the full scientific potential of the mission. There is a Memorandum of Understanding between ESA and NASA that commits to there being a full copy of the Rosetta science data holdings both within the Planetary Science Archive (PSA) at ESA and with NASA's Planetary Data System, at the Small Bodies Node (SBN) in Maryland. The requirements from each archiving authority place sometimes contradictory restrictions on the formatting and structure of the data content, and there has also been a significant evolution of the archives on both side of the Atlantic. The SBN have themselves expressed a desire to 'convert' the Rosetta data to PDS4 formats, so this will need to be carefully managed between the archiving authorities to ensure consistency in the Rosetta archive overall. Validation of the returned data to ensure full compliance with both the PSA and the PDS archives has required the development of a specific tool (DVal) that can be configured to manage the specificities of each instrument team's science data. Unlike the PDS, which comprises an affiliation of 'nodes', each specialising in a planetary science discipline, the PSA is a single archive designed to host data from all of ESA's planetary science missions. There have been significant challenges in evolving the archive to meet Rosetta's needs as a long-term project, without compromising the service provided to the other ongoing missions. Partly in response to this, the PSA is currently implementing a number of significant changes, both to its web-based interface to the scientific community, and to its database structure. The newly designed PSA will aim to provide easier and more direct access to the Rosetta data (and all of ESA's planetary science data holdings), and will help to soften the impact of some of the issues that have arisen with managing missions such as Rosetta in the existing framework. Conclusions: Development and management of the Rosetta science archive has been a significant challenge, due in part to the long duration of the mission and the corresponding need for development of the archive infrastructure and of the archiving process to manage these changes. The definition of a single set of conventions to manage the diverse suite of instruments, targets and indeed archiving authorities on Rosetta over this time has been a major issue, as has the need to evolve the validation processes that allow the data to be fully ingested and released to the community. This presentation will discuss the many issues faced by the PSA in the archiving of data from Rosetta, and the approach taken to resolve them. Lessons learned will be presented along with recommendations for other archiving authorities who will in future have the need to design and operate a science archive for long duration and international missions.

Extended Multiscale Image Segmentation for Castellated Wall Management

NASA Astrophysics Data System (ADS)

Sakamoto, M.; Tsuguchi, M.; Chhatkuli, S.; Satoh, T.

2018-05-01

Castellated walls are positioned as tangible cultural heritage, which require regular maintenance to preserve their original state. For the demolition and repair work of the castellated wall, it is necessary to identify the individual stones constituting the wall. However, conventional approaches using laser scanning or integrated circuits (IC) tags were very time-consuming and cumbersome. Therefore, we herein propose an efficient approach for castellated wall management based on an extended multiscale image segmentation technique. In this approach, individual stone polygons are extracted from the castellated wall image and are associated with a stone management database. First, to improve the performance of the extraction of individual stone polygons having a convex shape, we developed a new shape criterion named convex hull fitness in the image segmentation process and confirmed its effectiveness. Next, we discussed the stone management database and its beneficial utilization in the repair work of castellated walls. Subsequently, we proposed irregular-shape indexes that are helpful for evaluating the stone shape and the stability of the stone arrangement state in castellated walls. Finally, we demonstrated an application of the proposed method for a typical castellated wall in Japan. Consequently, we confirmed that the stone polygons can be extracted with an acceptable level. Further, the condition of the shapes and the layout of the stones could be visually judged with the proposed irregular-shape indexes.

RNA-protein interactions in an unstructured context.

PubMed

Zagrovic, Bojan; Bartonek, Lukas; Polyansky, Anton A

2018-05-31

Despite their importance, our understanding of noncovalent RNA-protein interactions is incomplete. This especially concerns the binding between RNA and unstructured protein regions, a widespread class of such interactions. Here, we review the recent experimental and computational work on RNA-protein interactions in an unstructured context with a particular focus on how such interactions may be shaped by the intrinsic interaction affinities between individual nucleobases and protein side chains. Specifically, we articulate the claim that the universal genetic code reflects the binding specificity between nucleobases and protein side chains and that, in turn, the code may be seen as the Rosetta stone for understanding RNA-protein interactions in general. © 2018 The Authors. FEBS Letters published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies.

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

PubMed Central

Conchúir, Shane Ó.; Der, Bryan S.; Drew, Kevin; Kuroda, Daisuke; Xu, Jianqing; Weitzner, Brian D.; Renfrew, P. Douglas; Sripakdeevong, Parin; Borgo, Benjamin; Havranek, James J.; Kuhlman, Brian; Kortemme, Tanja; Bonneau, Richard; Gray, Jeffrey J.; Das, Rhiju

2013-01-01

The Rosetta molecular modeling software package provides experimentally tested and rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, nucleic acids, and a growing number of non-natural polymers. Despite its free availability to academic users and improving documentation, use of Rosetta has largely remained confined to developers and their immediate collaborators due to the code’s difficulty of use, the requirement for large computational resources, and the unavailability of servers for most of the Rosetta applications. Here, we present a unified web framework for Rosetta applications called ROSIE (Rosetta Online Server that Includes Everyone). ROSIE provides (a) a common user interface for Rosetta protocols, (b) a stable application programming interface for developers to add additional protocols, (c) a flexible back-end to allow leveraging of computer cluster resources shared by RosettaCommons member institutions, and (d) centralized administration by the RosettaCommons to ensure continuous maintenance. This paper describes the ROSIE server infrastructure, a step-by-step ‘serverification’ protocol for use by Rosetta developers, and the deployment of the first nine ROSIE applications by six separate developer teams: Docking, RNA de novo, ERRASER, Antibody, Sequence Tolerance, Supercharge, Beta peptide design, NCBB design, and VIP redesign. As illustrated by the number and diversity of these applications, ROSIE offers a general and speedy paradigm for serverification of Rosetta applications that incurs negligible cost to developers and lowers barriers to Rosetta use for the broader biological community. ROSIE is available at http://rosie.rosettacommons.org. PMID:23717507

Assessing the Age of an Asteroid's Surface with Data from the International Rosetta Mission

NASA Technical Reports Server (NTRS)

Lopez, Juan Carlos

2011-01-01

Rosetta is an international mission led by the European Space Agency (ESA) with key support and instrumentation from the National Aeronautics and Space Administration (NASA). Rosetta is currently on a ten-year mission to catch comet 67P/Churyumov-Gerasimenko (C-G); throughout its voyage, the spacecraft has performed flybys of two main belt asteroids (MBA): Steins and Lutetia. Data on the physical, chemical, and geological properties of these asteroids are currently being processed and analyzed. Accurate interpretation of such data is fundamental in the success of Rosetta's mission and overall objectives. Post-flyby data analyses strive to correlate the size, shape, volume, and rotational rate of Lutetia, in addition to interpreting its multi-color imagining, albedo, and spectral mapping. Although advancements in science have contributed to the examination of celestial bodies, methods to analyze asteroids remain largely empirical, not semi-empirical, nor ab initio. This study aims to interpret and document the scientific methods currently utilized in the characterization of asteroid (21) Lutetia in order to render these processes and methods accessible to the public. Examples include a standardized technique for assessing the age of an asteroid surface, complete with clickable reference maps, methodology of grouping surface characteristics together, and a standardized power law equation for the age. Other examples include determining the density of an object. Context for what both density and age mean is a bi-product of this study. Results of the study will aid in the development of pedagogical material on asteroids for public use, and in creation of an academic database for selected targets that might be used as a reference.

Petition to Object to Otter Tail Power Company's Big Stone Power Plant, Big Stone City, South Dakota, Title V Operating Permit

EPA Pesticide Factsheets

This document may be of assistance in applying the Title V air operating permit regulations. This document is part of the Title V Petition Database available at www2.epa.gov/title-v-operating-permits/title-v-petition-database. Some documents in the database are a scanned or retyped version of a paper photocopy of the original. Although we have taken considerable effort to quality assure the documents, some may contain typographical errors. Contact the office that issued the document if you need a copy of the original.

Rosetta begins its 10-year journey to the origins of the Solar System

NASA Astrophysics Data System (ADS)

2004-03-01

Rosetta’s mission began at 08h17 CET (07h17 GMT) on 2 March when a European Ariane 5 launch vehicle liftered off from the Guiana Space Centre, Europe’s spaceport in Kourou, French Guiana. The launcher successfully placed its upper stage and payload into an eccentric coast orbit (200 x 4000 km). About two hours later, at 10h14 CET (09h14 GMT) the upper stage ignited its own engine to reach an escape velocity in order to leave the Earth’s gravity field and enter heliocentric orbit. The Rosetta probe was released about 18 minutes later. “After the recent success of Mars Express, Europe is now heading to deep space with another fantastic mission. We will have to be patient, as the rendezvous with the comet will not take place until ten years from now, but I think it’s worth the wait” said ESA’s Director General Jean-Jacques Dordain witnessing the launch from Kourou. ESA’s Operations Centre (ESOC) in Darmstadt, Germany, has established contact with the probe as it flies away from Earth at a relative speed of about 3.4 km/s. ESOC will be in charge of Rosetta operations and orbit determination throughout the mission. During the next eight months, the spacecraft’s onboard systems will be checked and its science payload will be commissioned. A 10-year odyssey Rosetta will be reactivated for planetary flybys, which will be used to modify its trajectory through gravity assist manoeuvres. During the trip, the probe could also observe one or more asteroids, observation of asteroids being one of the mission's secondary objectives. The first planetary encounter will be in March 2005, as Rosetta flies by the Earth for the first time. The gravity assist will boost Rosetta into an orbit that will take it to Mars two years later. During its close encounter with Mars in February 2007, Rosetta will approach to a distance of about 200 km and conduct science observations. This Martian flyby will be followed by another Earth flyby in November the same year. Both planetary encounters will increase the probe’s orbital energy and boost it well into the asteroid belt. A third and last flyby of the Earth in November 2009 will send Rosetta toward the orbit of comet Churyumov-Gerasimenko. Then, by mid-2011, when it is about 800 million km from the Sun, Rosetta will ignite its main engine for a major deep-space manoeuvre that will place it onto an interception trajectory with the comet, which will take nearly three years to be reached. Rosetta will be reactivated for good in January 2014, as it enters a six-month approach phase, closing in slowly on the nucleus of comet Churyumov-Gerasimenko. The comet will then still be far from the Sun and should not be active. Rendezvous with a comet Like comet 46P/Wirtanen, which was the planned target for Rosetta until its launch was postponed in early 2003, comet 67P/Churyumov-Gerasimenko is one of the periodic comets that were “trapped” in the inner Solar System after they came too close to Jupiter. This comet was discovered in September 1969 at the Almaty Astrophysical Institute in Kazakhstan. It was detected by astronomer Klim Churyumov, from the University of Kiev, Ukraine, on pictures taken by his colleague Svetlana Gerasimenko, from the Institute of Astrophysics of Dushanbe, Tajikistan. Rosetta will start accompanying the comet's nucleus in August 2014. It will then conduct detailed mapping of its surface and a landing site will be selected for Philae, its 100 kg lander. Philae will be dropped from an altitude of about 1 km and, due to the tiny gravity of the nucleus, it will touch down at walking speed. The lander will even have to anchor itself to the surface with two harpoons to avoid bouncing back. Philae is expected to operate from the surface for several weeks, sending back very high resolution pictures and as information about the upper crust of the nucleus. These data will be relayed to Earth by the orbiter. Rosetta will continue its observations of the comet’s nucleus for over a year, at least until December 2015, and will have a ringside seat to monitor the « awakening » of the comet’s activity as it comes closer to the Sun and reached its perihelion, in October 2015. Probing the comet The Rosetta probe was built for ESA by an industrial team of over 50 European companies led by EADS Astrium. It is a 3 tonne spacecraft with solar arrays spanning an impressive 32 metres. This is the first probe designed to travel beyond the orbit of Mars to rely on solar cells for its power supply. In addition to the Philae lander, Rosetta incorporates a 165 kg science payload consisting of 11 instruments developed in partnership by ESA member countries and by the the United States. Four of these instruments are dedicated to observation of the nucleus: the ALICE ultraviolet spectrometer, the OSIRIS high-resolution camera, the VIRTIS imaging spectrometer and the MIRO microwave radiometer/spectrometer. Three more instruments will study the composition of the nucleus and its emanations; the COSIMA and ROSINA spectrometers and the MIDAS microscope. The GIADA collector will analyse dusts in the vicinity of the nucleus while the RPC group of sensors will characterise the internal structure of the comet’s coma and its interaction with the solar wind. The last two instruments, CONSERT and RSI, will use radio waves, one to probe the internal structure of the nucleus and the other to determine the distribution of masses inside the nucleus and the structure of the coma. The Philae lander, developed under the leadership of Germany’s DLR aerospace research agency, carries 9 instruments provided by ESA member countries in partnership with the United States, Hungary and Russia. Among these, the ÇIVA/ROLIS set of cameras will provide panoramic and stereoscopic high-resolution views. The APXS, COSAC and Ptolemy instruments will analyse soil compounds. The SESAME seismometer will probe the surface to a depth of 2 m, while its characteristics will be studied by the MUPUS instrument with sensors on the anchoring harpoon. The ROMAP magnetometer and a second model of the CONSERT experiment will study the magnetic field and its interactions with the solar wind. The Rosetta Stone -unearthed in Egypt more than 200 years ago- gave XIXth-century Egyptologists the keys to decipher hieroglyphic writing and to rediscover three millennia of forgotten Egyptian history and culture. The in-depth study of a comet’s nucleus and asteroids by the Rosetta probe is expected to enable today’s science community to decipher the mystery of the origins of our Solar System and to better understand the mechanisms ruling the formation of planetary systems around other stars.

Gender Distribution of Pediatric Stone Formers

NASA Astrophysics Data System (ADS)

Novak, Thomas E.; Trock, Bruce J.; Lakshmanan, Yegappan; Gearhart, John P.; Matlaga, Brian R.

2008-09-01

Recent epidemiologic evidence suggests that the gender prevalence among adult stone-formers is changing, with an increasing incidence of stone disease among women. No similar data have ever been reported for the pediatric stone-forming population. We performed a study to define the gender distribution among pediatric stone-formers using a large-scale national pediatric database. Our findings suggest that gender distribution among stone formers varies by age with male predominance in the first decade of life shifting to female predominance in the second decade. In contrast to adults, females in the pediatric population are more commonly affected by stones than are males. The incidence of pediatric stone disease appears to be increasing at a great rate in both sexes. Further studies should build on this hypothesis-generating work and define the effects of metabolic and environmental risk factors that may influence stone risk in the pediatric patient population

The U.S. Rosetta Project: Preparations for Prime Mission, 2014

NASA Technical Reports Server (NTRS)

Alexander, C.; Chmielewski, A.; Aguinaldo, A. M.; Ko, A.; Accomazzo, A.; Taylor, M. G. G.

2014-01-01

In 2014, the International Rosetta mission will place a spacecraft in orbit around comet 67P/Churyumov-Gerasimenko and deliver a lander to the comet's surface. The National Aeronautics and Space Administration's (NASA) contribution to the International Rosetta mission, designated the U.S. Rosetta Project, includes several instruments, tracking support, and science support for some non-US payloads. In July 2011 the spacecraft was placed in a long-duration hibernation mode planned to last approximately 37 months to conserve electrical power. Rosetta will rendezvous with 67P/Churyumov-Gerasimenko in 2014. On the eve of the mission's arrival at its target, this paper highlights three issues related to Rosetta's looming prime mission: (A) measures taken in 2009 to prepare the US Rosetta Project for the long-duration hibernation mode; (B) risk reviews conducted in 2013 to prepare the US Rosetta Project for exit from hibernation; (C) ESA and NASA preparations for use of NASA Deep Space Network (DSN) assets related to keyword files.

Planetary data distribution by the French Plasma Physics Data Centre (CDPP): the example of Rosetta Plasma Consortium in the perspective of Solar Orbiter, Bepi-Colombo and JUICE

NASA Astrophysics Data System (ADS)

Génot, V.; Dufourg, N.; Bouchemit, M.; Budnik, E.; André, N.; Cecconi, B.; Gangloff, M.; Durand, J.; Pitout, F.; Jacquey, C.; Rouillard, A.; Jourdane, N.; Heulet, D.; Lavraud, B.; Modolo, R.; Garnier, P.; Louarn, P.; Henri, P.; Galand, M.; Beth, A.

2017-09-01

The French Plasma Physics Data Centre (CDPP, http://www.cdpp.eu/ ) has been addressing for almost the past 20 years all issues pertaining to natural plasma data distribution and valorization. Initially established by CNES and CNRS on the ground of a solid data archive, CDPP activities diversified with the advent of broader networks and interoperability standards, and through fruitful collaborations (e.g. with NASA/PDS). Providing access to remote data, designing and building science driven analysis tools then became at the forefront of CDPP developments. In the frame of data distribution, the CDPP has provided to the Rosetta Plasma Consortium (RPC), a suite of five different plasma sensors, with the possibility to visualize plasma data acquired by the Rosetta mission through its data analysis tool AMDA. AMDA was used during the operational phase of the Rosetta mission, facilitating data access between different Rosetta PI sensor teams, thus allowing 1/ a more efficient instruments operation planning and 2/ a better understanding of single instrument observations in the context of other sensor measurements and of more global observations. The data are now getting open to the public via the AMDA tool as they are released to the ESA/PSA. These in-situ data are complemented by model data, for instance, a solar wind propagation model (see http://heliopropa.irap.omp.eu ) or illumination maps of 67P (available through http://vespa.obspm.fr ). The CDPP also proposes 3D visualization tool for planetary / heliospheric environments which helps putting data in context (http://3dview.cdpp.eu ); for instance all comets and asteroids in a given volume and for a given time interval can be searched and displayed. From this fruitful experience the CDPP intends to play a similar role for the forthcoming data of the Solar Orbiter, Bepi-Colombo and JUICE missions as it is officially part of several instrument consortia. Beside highlighting the current database and products, the presentation will show how these future data could be presented and valorized through a combined use of the tools and models provided by the CDPP.

Engineering, Life Sciences, and Health/Medicine Synergy in Aerospace Human Systems Integration: The Rosetta Stone Project

NASA Technical Reports Server (NTRS)

Williams, Richard S. (Editor); Doarn, Charles R. (Editor); Shepanek, Marc A.

2017-01-01

In the realm of aerospace engineering and the physical sciences, we have developed laws of physics based on empirical and research evidence that reliably guide design, research, and development efforts. For instance, an engineer designs a system based on data and experience that can be consistently and repeatedly verified. This reproducibility depends on the consistency and dependability of the materials on which the engineer works and is subject to physics, geometry and convention. In life sciences and medicine, these apply as well, but individuality introduces a host of variables into the mix, resulting in characteristics and outcomes that can be quite broad within a population of individuals. This individuality ranges from differences at the genetic and cellular level to differences in an individuals personality and abilities due to sex and gender, environment, education, etc.

RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design

PubMed Central

Huang, Po-Ssu; Ban, Yih-En Andrew; Richter, Florian; Andre, Ingemar; Vernon, Robert; Schief, William R.; Baker, David

2011-01-01

We describe RosettaRemodel, a generalized framework for flexible protein design that provides a versatile and convenient interface to the Rosetta modeling suite. RosettaRemodel employs a unified interface, called a blueprint, which allows detailed control over many aspects of flexible backbone protein design calculations. RosettaRemodel allows the construction and elaboration of customized protocols for a wide range of design problems ranging from loop insertion and deletion, disulfide engineering, domain assembly, loop remodeling, motif grafting, symmetrical units, to de novo structure modeling. PMID:21909381

Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta

PubMed Central

Kleffner, Robert; Flatten, Jeff; Leaver-Fay, Andrew; Baker, David; Siegel, Justin B.; Khatib, Firas; Cooper, Seth

2017-01-01

Abstract Summary: Foldit Standalone is an interactive graphical interface to the Rosetta molecular modeling package. In contrast to most command-line or batch interactions with Rosetta, Foldit Standalone is designed to allow easy, real-time, direct manipulation of protein structures, while also giving access to the extensive power of Rosetta computations. Derived from the user interface of the scientific discovery game Foldit (itself based on Rosetta), Foldit Standalone has added more advanced features and removed the competitive game elements. Foldit Standalone was built from the ground up with a custom rendering and event engine, configurable visualizations and interactions driven by Rosetta. Foldit Standalone contains, among other features: electron density and contact map visualizations, multiple sequence alignment tools for template-based modeling, rigid body transformation controls, RosettaScripts support and an embedded Lua interpreter. Availability and Implementation: Foldit Standalone is available for download at https://fold.it/standalone, under the Rosetta license, which is free for academic and non-profit users. It is implemented in cross-platform C ++ and binary executables are available for Windows, macOS and Linux. Contact: scooper@ccs.neu.edu PMID:28481970

ROSETTA: How to archive more than 10 years of mission

NASA Astrophysics Data System (ADS)

Barthelemy, Maud; Heather, D.; Grotheer, E.; Besse, S.; Andres, R.; Vallejo, F.; Barnes, T.; Kolokolova, L.; O'Rourke, L.; Fraga, D.; A'Hearn, M. F.; Martin, P.; Taylor, M. G. G. T.

2018-01-01

The Rosetta spacecraft was launched in 2004 and, after several planetary and two asteroid fly-bys, arrived at comet 67P/Churyumov-Gerasimenko in August 2014. After escorting the comet for two years and executing its scientific observations, the mission ended on 30 September 2016 through a touch down on the comet surface. This paper describes how the Planetary Science Archive (PSA) and the Planetary Data System - Small Bodies Node (PDS-SBN) worked with the Rosetta instrument teams to prepare the science data collected over the course of the Rosetta mission for inclusion in the science archive. As Rosetta is an international mission in collaboration between ESA and NASA, all science data from the mission are fully archived within both the PSA and the PDS. The Rosetta archiving process, supporting tools, archiving systems, and their evolution throughout the mission are described, along with a discussion of a number of the challenges faced during the Rosetta implementation. The paper then presents the current status of the archive for each of the science instruments, before looking to the improvements planned both for the archive itself and for the Rosetta data content. The lessons learned from the first 13 years of archiving on Rosetta are finally discussed with an aim to help future missions plan and implement their science archives.

ESA's Rosetta mission and the puzzles that Hale-Bopp left behind

NASA Astrophysics Data System (ADS)

1997-04-01

The scientific payload was confirmed by ESA's Science Programme Committee in February. Now the scientists must perfect the full range of ultra-sensitive yet spaceworthy instruments in good time for Rosetta's despatch by an Ariane 5 launcher in January 2003. And even as most of the world was admiring Comet Hale-Bopp at its brightest, dedicated astronomers were examining the comet that will be Rosetta's target. Although too faint to be seen with the naked eye, Comet Wirtanen made its closest approach to the Sun on 14 March and a fairly close approach to the Earth on 24 March. This comet comes back every 5.5 years. Rosetta will dance attendance on Comet Wirtanen, not at the next return in 2002, nor even in 2008, but in 2013. The project is an ambitious and patient effort to achieve the most thorough investigation of a comet ever attempted. As the successor to ESA's highly successful Giotto mission to Halley's Comet and Comet Grigg-Skjellerup (which took seven years) Rosetta will spend eight years positioning itself. It will manoeuvre around the planets until it is shadowing Comet Wirtanen far beyond Mars, on nearly the same path around the Sun. In 2011 it will rendezvous with the comet and fly near it. In April 2012 Rosetta will go into a near orbit around Comet Wirtanen, and escort it for 17 busy months, as it flies in to make its closest approach to the Sun in September 2013, at the climax of the mission. "The Giotto mission placed us at the forefront of cometary exploration," comments Roger Bonnet, ESA's director of science. "The motivation came from European scientists with a sharp sense of the special importance of comets for understanding the Solar System. The same enthusiasm drives us onward to Rosetta, which will ensure our continued leadership in this important branch of space science." Scientific tasks During its prolonged operations in very close company with the comet's nucleus, Rosetta will map and examine its entire surface from distances of 10 to 50 kilometres with a set of remote-sensing instruments. As the spacecraft moves around the nucleus at a very leisurely walking pace, other onboard instruments will analyse the dust and vapours, which will emanate from Comet Wirtanen with ever-increasing vigour as the Sun's rays warm it. Rosetta will drop a lander on to the comet's surface, for close inspection of its physical condition and chemical composition. The lander is a venture led by Germany, France and Italy, with participation from Austria, Finland, Hungary, Poland and the UK. As a box packed with scientific instruments and standing on three legs, the lander will be capable of anchoring itself to one spot and drilling into the surface. It may also be able to hop like a flea to visit another part of the nucleus. A combination of solar energy and electric batteries will enable operations to last for several months. "The combination of Rosetta in orbit around the comet and the lander on its surface is very powerful from a scientific point of view," says Gerhard Schwehm, ESA's project scientist for Rosetta. "We shall watch Comet Wirtanen brewing up like a volcano as it feels the heat of the Sun. In place of hazy impressions of the nucleus of a comet half hidden by its dust clouds, we shall see all the details with unprecedented clarity." Unanswered questions During and after the 1986 appearance of Halley's Comet, comet science made great progress. More recent comets have revealed important secrets to ESA's Infrared Space Observatory and to other space telescopes examining them at wavelengths unobservable from the Earth. Yet basic questions about comets remain unanswered. Just as the Rosetta Stone was the key that unlocked the meaning of Egyptian hieroglyphs, so the Rosetta spacecraft is intended to decipher the meaning of comets and their role in the origin and history of the Solar System. Here are a few of the main puzzles. * What does a comet weigh? Guesses about the density of cometary material vary widely, and only an orbiting spacecraft can give exact measurements of the comet's volume and mass. * Is a comet a dirty snowball or an icy dirtball? In other words, is it made of ices contaminated with mineral and tarry dust, or is it a consolidation of dust coated with ices? * Why is the nucleus of a comet so dark? Giotto established that Halley's nucleus is like brownish-black velvet, absorbing 96 per cent of the sunlight falling on it. Is the colour due to a surface deposit of tarry dust, or is the interior dark too? * Why are small regions of a comet highly active when most of its surface is not? Multiple jets of dust seen emanating from Halley's Comet, and spectacularly from Comet Hale-Bopp, imply that certain hot-spots differ physically or chemically from the rest of the comet's surface. * Is a comet made as single piece, or does it consist of loosely joined blocks, as suggested by the Giotto images? This relates to the questions of how comets are built, and why they break up into smaller fragments, as seen spectacularly with Comet Shoemaker-Levy 9 which hit Jupiter in 1994. * Does a dying comet evaporate and disappear, or does it simply exhaust the stocks of ice that drive the emissions of gas and dust from an active comet? If the latter answer is correct, dead comets persist long afterwards as dark, inactive masses of minerals and tar, and pose a lasting threat of collisions with the Earth. * What is a comet's exact composition? Many ingredients are known, and the approximate abundances of the main constituents. Details coming from Rosetta will pin down (1) how comets were fashioned from similar constituents of interstellar dust and (2) how comets contributed to building the planets, including the Earth, and stocking their atmospheres. * Is the tarry, carbon-rich material in comets a jumble of every kind of chemical that inorganic processes can make from carbon, nitrogen, oxygen and hydrogen, or does it contain special compounds? This is relevant to assessing the role of comets in the origin of life on the Earth. The comet specialist Uwe Keller of the Max-Planck Institut fur Aeronomie, Germany, is one of the Giotto veterans who has helped with the planning of Rosetta. He was in charge of Giotto's camera. "Rosetta is the mission we are all waiting for," Dr Keller comments. "After I spent six years analysing our images of the Halley nucleus, I say that basic scientific assumptions about the nature of comets are still contradictory. We shall settle the arguments only by the close, prolonged inspection that Rosetta will make possible." Engineering the Rosetta mission To build up the speed needed to adopt the same orbit around the Sun as Comet Wirtanen, Rosetta must steal energy of motion from the planets, in a swingby of Mars and two swingbys of the Earth. During its far-flung manoeuvres in pursuit of the comet, Rosetta will inspect the asteroids Mimistrobell and Rodari at close quarters. When Rosetta is far from the Earth, or on the wrong side of the Sun, communication will be difficult. The spacecraft will therefore have a high degree of robotic self-reliance. It will also be capable of hibernating for more than two years without attention -- a technique devised by ESA for the later stages of the Giotto mission. Rosetta will rely on solar power, even when more than five times further than the Earth from the Sun. Special low-intensity solar cells are under development for Rosetta. Conditions in this farthest phase of Rosetta's voyage will be very chilly, but ESA's engineers are satisfied that the temperatures inside the spacecraft can be kept within limits by black paint, multilayer insulation and electric heaters. Despite its originality and sophistication, Rosetta will be just a flying box with solar arrays like wings, looking rather like a telecommunications satellite. "Keep it simple," is the motto of John Credland, ESA's project manager for Rosetta. "Simplicity brings reliability," he explains, "and that is my overriding concern for the engineering of a spacecraft that has to survive and operate far from the Earth for nearly eleven years." To command Rosetta, and to receive its signals carrying new of the comet, ESA will use a new 32-metre deep-space tracking antenna at Perth in Australia, and a 15-metre antenna in Spain. The spacecraft operations, especially in the near-comet phase of the mission, will be a novel experience for the controllers at the European Space Operations Centre in Darmstadt, Germany. The gravity of the comet will be weak, and Rosetta's manoeuvres around it will be like a ballet in slow motion. At around 10 kilometres distance, the spacecraft will travel at only 1-2 kilometres per hour in relation to the comet and take about a week to circle once around the nucleus. Sometimes Rosetta will swoop even closer to the comet's surface, to inspect possible landing sights and to drop the lander. The spacecraft's thrusters will adjust the orbit. To keep manoeuvres to a minimum, and so conserve fuel and avoid polluting the comet's environment, computer simulations will help the spacecraft navigators to predict the consequences of any manoeuvre for weeks in advance. The target comet Present-day space propulsion systems allow a rendezvous only with a comet with a predictable and relatively small orbit around the Sun. All comets of this kind are "old", in the sense that they have visited the Sun's vicinity many times and are no longer vigorous in the dust and gas formation that makes their visible comas and tails. The second comet visited by Giotto, Comet Grigg-Skjellerup, was of this elderly kind. From among several short-period candidates, the mission team chose Comet Wirtanen as Rosetta's target comet because it offered the quickest timetable between the launch of the spacecraft and the completion of the mission. The comet was discovered by chance by Carl Wirtanen in 1948 on photographic plates at the Lick Observatory in California. In 1972 and 1984 encounters with the planet Jupiter reduced the size of Comet Wirtanen's orbit, and shortened the interval between its visits to the Sun from 6.65 to 5.5 years. Despite many observations no one really knows the comet's mass, size and shape. The uncertainties are reflected in the computer simulations of manoeuvres near the comet. These cover a wide range of possibilities from a lightweight comet to a massive one, and from a small comet 1 kilometre in diameter to a large one 20 kilometres wide. The best estimate may be 1.5 kilometres. But it is in the nature of a voyage of exploration like Rosetta's that you don't know what you will find!

Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta.

PubMed

Kleffner, Robert; Flatten, Jeff; Leaver-Fay, Andrew; Baker, David; Siegel, Justin B; Khatib, Firas; Cooper, Seth

2017-09-01

Foldit Standalone is an interactive graphical interface to the Rosetta molecular modeling package. In contrast to most command-line or batch interactions with Rosetta, Foldit Standalone is designed to allow easy, real-time, direct manipulation of protein structures, while also giving access to the extensive power of Rosetta computations. Derived from the user interface of the scientific discovery game Foldit (itself based on Rosetta), Foldit Standalone has added more advanced features and removed the competitive game elements. Foldit Standalone was built from the ground up with a custom rendering and event engine, configurable visualizations and interactions driven by Rosetta. Foldit Standalone contains, among other features: electron density and contact map visualizations, multiple sequence alignment tools for template-based modeling, rigid body transformation controls, RosettaScripts support and an embedded Lua interpreter. Foldit Standalone is available for download at https://fold.it/standalone , under the Rosetta license, which is free for academic and non-profit users. It is implemented in cross-platform C ++ and binary executables are available for Windows, macOS and Linux. scooper@ccs.neu.edu. © The Author(s) 2017. Published by Oxford University Press.

Web-accessible molecular modeling with Rosetta: The Rosetta Online Server that Includes Everyone (ROSIE).

PubMed

Moretti, Rocco; Lyskov, Sergey; Das, Rhiju; Meiler, Jens; Gray, Jeffrey J

2018-01-01

The Rosetta molecular modeling software package provides a large number of experimentally validated tools for modeling and designing proteins, nucleic acids, and other biopolymers, with new protocols being added continually. While freely available to academic users, external usage is limited by the need for expertise in the Unix command line environment. To make Rosetta protocols available to a wider audience, we previously created a web server called Rosetta Online Server that Includes Everyone (ROSIE), which provides a common environment for hosting web-accessible Rosetta protocols. Here we describe a simplification of the ROSIE protocol specification format, one that permits easier implementation of Rosetta protocols. Whereas the previous format required creating multiple separate files in different locations, the new format allows specification of the protocol in a single file. This new, simplified protocol specification has more than doubled the number of Rosetta protocols available under ROSIE. These new applications include pK a determination, lipid accessibility calculation, ribonucleic acid redesign, protein-protein docking, protein-small molecule docking, symmetric docking, antibody docking, cyclic toxin docking, critical binding peptide determination, and mapping small molecule binding sites. ROSIE is freely available to academic users at http://rosie.rosettacommons.org. © 2017 The Protein Society.

Renal stone composition does not affect the outcome of percutaneous nephrolithotomy in children.

PubMed

Kaygısız, Onur; Türegün, Fethi Ahmet; Satar, Nihat; Özen, Ender; Toksöz, Serdar; Doğan, Hasan Serkan; Pişkin, Mehmet Mesut; İzol, Volkan; Sarıkaya, Şaban; Kılıçarslan, Hakan; Çiçek, Tufan; Öztürk, Ahmet; Tekgül, Serdar; Önal, Bülent

2018-05-14

We sought to investigate the association between renal stone composition and percutaneous nephrolithotomy outcomes in pediatric patients and define the characterization of the stone composition. The data of 1157 children who underwent percutaneous nephrolithotomy between 1991 and 2012 were retrieved from the multicenter database of the Turkish Pediatric Urology Society. The study population comprised 359 children (160 girls, 199 boys) with stone analyses. Patients were divided into five groups according to the stone composition [group 1: calcium oxalate; group 2: calcium phosphate; group 3: infection stones (magnesium ammonium phosphate, ammonium urate); group 4: cystine; group 5: uric acid, xanthine stones]. Patient characteristics, perioperative, postoperative, and stone characteristics were compared considering the stone composition. There were no significant differences between the groups concerning age, sex, side involved, preoperative hematocrit levels, and solitary renal unit. Patients with cystine stones were more likely to have a history of stone treatment. Groups 2 and 5 had mostly solitary stones. However, group 3 had staghorn stone more often, and group 4 frequently had multiple stones. Overall stone-free rate (79.4%) was similar among the groups. Although stone composition was related to blood transfusion and prolonged operative and fluoroscopy screening times on univariate analysis, it was not a significant predictor of them on multivariate analysis. Stone composition was not a predictor of outcomes of pediatric percutaneous nephrolithotomy. However, cystine and infection stones, which are larger and filled multiple calyxes due to the nature of stone forming, were more challenging cases that need multiple tracts.

Are ship tracks useful analogs for studying the aerosol indirect effect?

NASA Astrophysics Data System (ADS)

Christensen, M.; Toll, V.; Stephens, G. L.

2017-12-01

Vessels transiting the ocean sometimes leave their mark on the clouds - leaving behind reflective cloud lines, known as ship tracks. Ship tracks have been looked upon by some as a possible Rosetta Stone connecting the effects of changing aerosol over the ocean and cloud albedo effects on climate (Porch et al. 1990, Atmos. Enviorn., 1051-1059). In this research, we establish whether ship tracks, and volcano tracks - a natural analog, can be used to relate these cloud-scale perturbations to the aerosol effects occurring at larger regional-scales. Two databases containing over 1,500 ship and 900 volcano tracks, all carefully hand-selected from satellite imagery, are utilized; showing that ship tracks exhibit very similar cloud albedo effect responses to that of volcano tracks. For comparison, our global dataset utilises over 7 million CloudSat profiles consisting of single-layer marine warm cloud in which the retrievals are co-located with the MODerate Imaging Spectroradiometer (MODIS) product so that statistical relationships between aerosol and cloud can be computed over 4x4 degree regions. All datasets show the same key physical processes that govern the cloud-aerosol indirect effect, namely, the strong negative responses in cloud droplet size and the bidirectional responses in liquid water path and cloud albedo depending on the meteorological conditions. Finally, this analysis is extended to a comparison against several general circulation models where it is suggested that key processes such as cloud-top entrainment and evaporation that regulates against strong liquid water path responses are likely underrepresented in most models.

U.S. Instruments Aboard Rosetta

NASA Image and Video Library

2014-01-24

Three of NASA contributions to the ESA Rosetta mission are pictured here: an ultraviolet spectrometer called Alice top, the Ion and Electron Sensor IES bottom left, and the Microwave Instrument for Rosetta Orbiter MIRO bottom right.

RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite.

PubMed

Fleishman, Sarel J; Leaver-Fay, Andrew; Corn, Jacob E; Strauch, Eva-Maria; Khare, Sagar D; Koga, Nobuyasu; Ashworth, Justin; Murphy, Paul; Richter, Florian; Lemmon, Gordon; Meiler, Jens; Baker, David

2011-01-01

Macromolecular modeling and design are increasingly useful in basic research, biotechnology, and teaching. However, the absence of a user-friendly modeling framework that provides access to a wide range of modeling capabilities is hampering the wider adoption of computational methods by non-experts. RosettaScripts is an XML-like language for specifying modeling tasks in the Rosetta framework. RosettaScripts provides access to protocol-level functionalities, such as rigid-body docking and sequence redesign, and allows fast testing and deployment of complex protocols without need for modifying or recompiling the underlying C++ code. We illustrate these capabilities with RosettaScripts protocols for the stabilization of proteins, the generation of computationally constrained libraries for experimental selection of higher-affinity binding proteins, loop remodeling, small-molecule ligand docking, design of ligand-binding proteins, and specificity redesign in DNA-binding proteins.

Arenaviruses. Genes, proteins, and expression

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oldstone, M.B.A.

1987-01-01

This book provides a discussion of current knowledge on Arenaviruses. These viruses are the cause of major health problems, such as Lassa fever and Junin virus disease, and have been the Rosetta stone on which many of the major concepts in viral pathogenesis and immunobiology have been built. For example, study of lymphocytic choriomeningitis naturally and experimentally induced infection in the normal mouse host presented the scientific community with the first and definitive work on the following topics: virus induced immune response disease, immunologic tolerance, virus induced immune complex disease, presence and generation of cytotoxic T cells in vitro andmore » in vivo, H-2 restriction and dual recognition phenomena, and viral disease induced by altering physiologic or differential functions of a cell without causing alterations of house keeping or vital functions, i.e. pathology in the absence of cell or tissue lysis.« less

Spontaneous passage of ureteral stones in patients with indwelling ureteral stents.

PubMed

Baumgarten, Lee; Desai, Anuj; Shipman, Scott; Eun, Daniel D; Pontari, Michel A; Mydlo, Jack H; Reese, Adam C

2017-10-01

To determine rates of spontaneous ureteral stone passage in patients with indwelling ureteral stents, and to identify factors associated with the spontaneous passage of stones while a ureteral stent is in place. From our institutional database, we identified patients who underwent ureteroscopic procedures for stone disease between January 1, 2013 and March 1, 2015. We compared the rates of spontaneous stone passage between patients who had previously undergone ureteral stent placement and those who had not. In patients with indwelling stents, multivariate logistic regression was performed to identify factors associated with spontaneous stone passage. A total of 194 patients met inclusion criteria. Spontaneous stone passage rates were similar in the stented (17/119, 14%) and non-stented (15/75, 20%) groups (p = 0.30). In bivariate analysis of stented patients, smaller stone size (p < 0.001) and distal stone location (p = 0.01) were significantly associated with spontaneous stone passage. Multivariate logistic regression analysis of stented patients showed that only small stone size was significantly associated with the likelihood of stone passage (p = 0.01), whereas stent duration, stone location, and stone laterality were not. A small, but clinically significant percentage of ureteral stones pass spontaneously with a ureteral stent in place. Small stone size is associated with an increased likelihood of spontaneous passage in patients with indwelling stents. These findings may help to identify patients who can potentially avoid additional surgical procedures for definitive stone removal after ureteral stent placement.

The Guy's stone score--grading the complexity of percutaneous nephrolithotomy procedures.

PubMed

Thomas, Kay; Smith, Naomi C; Hegarty, Nicholas; Glass, Jonathan M

2011-08-01

To report the development and validation of a scoring system, the Guy's stone score, to grade the complexity of percutaneous nephrolithotomy (PCNL). Currently, no standardized method is available to predict the stone-free rate after PCNL. The Guy's stone score was developed through a combination of expert opinion, published data review, and iterative testing. It comprises 4 grades: grade I, solitary stone in mid/lower pole or solitary stone in the pelvis with simple anatomy; grade II, solitary stone in upper pole or multiple stones in a patient with simple anatomy or a solitary stone in a patient with abnormal anatomy; grade III, multiple stones in a patient with abnormal anatomy or stones in a caliceal diverticulum or partial staghorn calculus; grade IV, staghorn calculus or any stone in a patient with spina bifida or spinal injury. It was assessed for reproducibility using the kappa coefficient and validated on a prospective database of 100 PCNL procedures performed in a tertiary stone center. The complications were graded using the modified Clavien score. The clinical outcomes were recorded prospectively and assessed with multivariate analysis. The Guy's stone score was the only factor that significantly and independently predicted the stone-free rate (P = .01). It was found to be reproducible, with good inter-rater agreement (P = .81). None of the other factors tested, including stone burden, operating surgeon, patient weight, age, and comorbidity, correlated with the stone-free rate. The Guy's stone score accurately predicted the stone-free rate after PCNL. It was easy to use and reproducible. Copyright © 2011 Elsevier Inc. All rights reserved.

Peeping into Human Renal Calcium Oxalate Stone Matrix: Characterization of Novel Proteins Involved in the Intricate Mechanism of Urolithiasis

PubMed Central

Tandon, Chanderdeep

2013-01-01

Background The increasing number of patients suffering from urolithiasis represents one of the major challenges which nephrologists face worldwide today. For enhancing therapeutic outcomes of this disease, the pathogenic basis for the formation of renal stones is the need of hour. Proteins are found as major component in human renal stone matrix and are considered to have a potential role in crystal–membrane interaction, crystal growth and stone formation but their role in urolithiasis still remains obscure. Methods Proteins were isolated from the matrix of human CaOx containing kidney stones. Proteins having MW>3 kDa were subjected to anion exchange chromatography followed by molecular-sieve chromatography. The effect of these purified proteins was tested against CaOx nucleation and growth and on oxalate injured Madin–Darby Canine Kidney (MDCK) renal epithelial cells for their activity. Proteins were identified by Matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF MS) followed by database search with MASCOT server. In silico molecular interaction studies with CaOx crystals were also investigated. Results Five proteins were identified from the matrix of calcium oxalate kidney stones by MALDI-TOF MS followed by database search with MASCOT server with the competence to control the stone formation process. Out of which two proteins were promoters, two were inhibitors and one protein had a dual activity of both inhibition and promotion towards CaOx nucleation and growth. Further molecular modelling calculations revealed the mode of interaction of these proteins with CaOx at the molecular level. Conclusions We identified and characterized Ethanolamine-phosphate cytidylyltransferase, Ras GTPase-activating-like protein, UDP-glucose:glycoprotein glucosyltransferase 2, RIMS-binding protein 3A, Macrophage-capping protein as novel proteins from the matrix of human calcium oxalate stone which play a critical role in kidney stone formation. Thus, these proteins having potential to modulate calcium oxalate crystallization will throw light on understanding and controlling urolithiasis in humans. PMID:23894559

Protocols for Molecular Modeling with Rosetta3 and RosettaScripts

PubMed Central

2016-01-01

Previously, we published an article providing an overview of the Rosetta suite of biomacromolecular modeling software and a series of step-by-step tutorials [Kaufmann, K. W., et al. (2010) Biochemistry 49, 2987–2998]. The overwhelming positive response to this publication we received motivates us to here share the next iteration of these tutorials that feature de novo folding, comparative modeling, loop construction, protein docking, small molecule docking, and protein design. This updated and expanded set of tutorials is needed, as since 2010 Rosetta has been fully redesigned into an object-oriented protein modeling program Rosetta3. Notable improvements include a substantially improved energy function, an XML-like language termed “RosettaScripts” for flexibly specifying modeling task, new analysis tools, the addition of the TopologyBroker to control conformational sampling, and support for multiple templates in comparative modeling. Rosetta’s ability to model systems with symmetric proteins, membrane proteins, noncanonical amino acids, and RNA has also been greatly expanded and improved. PMID:27490953

Factors affecting stone-free rate and complications of percutaneous nephrolithotomy for treatment of staghorn stone.

PubMed

el-Nahas, Ahmed R; Eraky, Ibrahim; Shokeir, Ahmed A; Shoma, Ahmed M; el-Assmy, Ahmed M; el-Tabey, Nasr A; Soliman, Shady; Elshal, Ahmed M; el-Kappany, Hamdy A; el-Kenawy, Mahmoud R

2012-06-01

To determine factors affecting the stone-free rate and complications of percutaneous nephrolithotomy (PNL) for treatment of staghorn stones. The computerized database of patients who underwent PNL for treatment of staghorn stones between January 2003 and January 2011 was reviewed. All perioperative complications were recorded and classified according to modified Clavien classification system. The stone-free rate was evaluated with low-dose noncontrast computed tomography (CT). Univariate and multivariate statistical analyses were performed to determine factors affecting stone-free and complication rates. The study included 241 patients (125 male and 116 female) with a mean age of 48.7 ±14.3 years. All patients underwent 251 PNL (10 patients had bilateral stones). The stone-free rate of PNL monotherapy was 56% (142 procedures). At 3 months, the stone-free rate increased to 73% (183 kidneys) after shock wave lithotripsy. Independent risk factors for residual stones were complete staghorn stone and presence of secondary calyceal stones (relative risks were 2.2 and 3.1, respectively). The complication rate was 27% (68 PNL). Independent risk factors for development of complications were performance of the procedure by urologists other than experienced endourologist and positive preoperative urine culture (relative risks were 2.2 and 2.1, respectively). Factors affecting the incidence of residual stones after PNL are complete staghorn stones and the presence of secondary calyceal stones. Complications are significantly high if PNL is not performed by an experienced endourologist or if preoperative urine culture is positive. Copyright © 2012 Elsevier Inc. All rights reserved.

Validity of administrative coding in identifying patients with upper urinary tract calculi.

PubMed

Semins, Michelle J; Trock, Bruce J; Matlaga, Brian R

2010-07-01

Administrative databases are increasingly used for epidemiological investigations. We performed a study to assess the validity of ICD-9 codes for upper urinary tract stone disease in an administrative database. We retrieved the records of all inpatients and outpatients at Johns Hopkins Hospital between November 2007 and October 2008 with an ICD-9 code of 592, 592.0, 592.1 or 592.9 as one of the first 3 diagnosis codes. A random number generator selected 100 encounters for further review. We considered a patient to have a true diagnosis of an upper tract stone if the medical records specifically referenced a kidney stone event, or included current or past treatment for a kidney stone. Descriptive and comparative analyses were performed. A total of 8,245 encounters coded as upper tract calculus were identified and 100 were randomly selected for review. Two patients could not be identified within the electronic medical record and were excluded from the study. The positive predictive value of using all ICD-9 codes for an upper tract calculus (592, 592.0, 592.1) to identify subjects with renal or ureteral stones was 95.9%. For 592.0 only the positive predictive value was 85%. However, although the positive predictive value for 592.1 only was 100%, 26 subjects (76%) with a ureteral stone were not appropriately billed with this code. ICD-9 coding for urinary calculi is likely to be sufficiently valid to be useful in studies using administrative data to analyze stone disease. However, ICD-9 coding is not a reliable means to distinguish between subjects with renal and ureteral calculi. Copyright (c) 2010 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Predicting available water of soil from particle-size distribution and bulk density in an oasis-desert transect in northwestern China

NASA Astrophysics Data System (ADS)

Li, Danfeng; Gao, Guangyao; Shao, Ming'an; Fu, Bojie

2016-07-01

A detailed understanding of soil hydraulic properties, particularly the available water content of soil, (AW, cm3 cm-3), is required for optimal water management. Direct measurement of soil hydraulic properties is impractical for large scale application, but routinely available soil particle-size distribution (PSD) and bulk density can be used as proxies to develop various prediction functions. In this study, we compared the performance of the Arya and Paris (AP) model, Mohammadi and Vanclooster (MV) model, Arya and Heitman (AH) model, and Rosetta program in predicting the soil water characteristic curve (SWCC) at 34 points with experimental SWCC data in an oasis-desert transect (20 × 5 km) in the middle reaches of the Heihe River basin, northwestern China. The idea of the three models emerges from the similarity of the shapes of the PSD and SWCC. The AP model, MV model, and Rosetta program performed better in predicting the SWCC than the AH model. The AW determined from the SWCCs predicted by the MV model agreed better with the experimental values than those derived from the AP model and Rosetta program. The fine-textured soils were characterized by higher AW values, while the sandy soils had lower AW values. The MV model has the advantages of having robust physical basis, being independent of database-related parameters, and involving subclasses of texture data. These features make it promising in predicting soil water retention at regional scales, serving for the application of hydrological models and the optimization of soil water management.

Sex prevalence of pediatric kidney stone disease in the United States: an epidemiologic investigation.

PubMed

Novak, Thomas E; Lakshmanan, Yegappan; Trock, Bruce J; Gearhart, John P; Matlaga, Brian R

2009-07-01

To define the sex prevalence of inpatient hospital discharges for pediatric patients diagnosed with upper urinary tract stone disease. The study examined inpatient admissions for pediatric urolithiasis in 2003, using the Healthcare Cost and Utilization Project Kids' Inpatient Database. We used the International Classification of Disease, 9th edition, Clinical Modification codes, to identify patients with a principal diagnosis of renal (592.0) or ureteral (592.1) calculi. Sex prevalence was assessed, and the results were stratified by age group. In the 2003 Kids' Inpatient Database, the sex distribution among pediatric patients with stone formation varied significantly by age. In the first decade of age, a male predominance was found that had shifted to a female predominance in the second decade. Overall, however, girls in the pediatric population were more commonly affected by stones than were boys. In this nationally representative sample, the sex distribution of pediatric urolithiasis varied with age, with boys more commonly affected in the first decade of age and girls in the second decade. Although the reason for this unique epidemiologic finding is not readily apparent, additional studies can build on this hypothesis-generating work.

Stone heterogeneity index as the standard deviation of Hounsfield units: A novel predictor for shock-wave lithotripsy outcomes in ureter calculi

PubMed Central

Lee, Joo Yong; Kim, Jae Heon; Kang, Dong Hyuk; Chung, Doo Yong; Lee, Dae Hun; Do Jung, Hae; Kwon, Jong Kyou; Cho, Kang Su

2016-01-01

We investigated whether stone heterogeneity index (SHI), which a proxy of such variations, was defined as the standard deviation of a Hounsfield unit (HU) on non-contrast computed tomography (NCCT), can be a novel predictor for shock-wave lithotripsy (SWL) outcomes in patients with ureteral stones. Medical records were obtained from the consecutive database of 1,519 patients who underwent the first session of SWL for urinary stones between 2005 and 2013. Ultimately, 604 patients with radiopaque ureteral stones were eligible for this study. Stone related variables including stone size, mean stone density (MSD), skin-to-stone distance, and SHI were obtained on NCCT. Patients were classified into the low and high SHI groups using mean SHI and compared. One-session success rate in the high SHI group was better than in the low SHI group (74.3% vs. 63.9%, P = 0.008). Multivariate logistic regression analyses revealed that smaller stone size (OR 0.889, 95% CI: 0.841–0.937, P < 0.001), lower MSD (OR 0.995, 95% CI: 0.994–0.996, P < 0.001), and higher SHI (OR 1.011, 95% CI: 1.008–1.014, P < 0.001) were independent predictors of one-session success. The radiologic heterogeneity of urinary stones or SHI was an independent predictor for SWL success in patients with ureteral calculi and a useful clinical parameter for stone fragility. PMID:27035621

Stone heterogeneity index as the standard deviation of Hounsfield units: A novel predictor for shock-wave lithotripsy outcomes in ureter calculi.

PubMed

Lee, Joo Yong; Kim, Jae Heon; Kang, Dong Hyuk; Chung, Doo Yong; Lee, Dae Hun; Do Jung, Hae; Kwon, Jong Kyou; Cho, Kang Su

2016-04-01

We investigated whether stone heterogeneity index (SHI), which a proxy of such variations, was defined as the standard deviation of a Hounsfield unit (HU) on non-contrast computed tomography (NCCT), can be a novel predictor for shock-wave lithotripsy (SWL) outcomes in patients with ureteral stones. Medical records were obtained from the consecutive database of 1,519 patients who underwent the first session of SWL for urinary stones between 2005 and 2013. Ultimately, 604 patients with radiopaque ureteral stones were eligible for this study. Stone related variables including stone size, mean stone density (MSD), skin-to-stone distance, and SHI were obtained on NCCT. Patients were classified into the low and high SHI groups using mean SHI and compared. One-session success rate in the high SHI group was better than in the low SHI group (74.3% vs. 63.9%, P = 0.008). Multivariate logistic regression analyses revealed that smaller stone size (OR 0.889, 95% CI: 0.841-0.937, P < 0.001), lower MSD (OR 0.995, 95% CI: 0.994-0.996, P < 0.001), and higher SHI (OR 1.011, 95% CI: 1.008-1.014, P < 0.001) were independent predictors of one-session success. The radiologic heterogeneity of urinary stones or SHI was an independent predictor for SWL success in patients with ureteral calculi and a useful clinical parameter for stone fragility.

Assessment of Stone Complexity for PCNL: A Systematic Review of the Literature, How Best Can We Record Stone Complexity in PCNL?

PubMed

Withington, John; Armitage, James; Finch, William; Wiseman, Oliver; Glass, Jonathan; Burgess, Neil

2016-01-01

This study aims to systematically review the literature reporting tools for scoring stone complexity and the stratification of outcomes by stone complexity. In doing so, we aim to determine whether the evidence favors uniform adoption of any one scoring system. PubMed and Embase databases were systematically searched for relevant studies from 2004 to 2014. Reports selected according to predetermined inclusion and exclusion criteria were appraised in terms of methodologic quality and their findings summarized in structured tables. After review, 15 studies were considered suitable for inclusion. Four distinct scoring systems were identified and a further five studies that aimed to validate aspects of those scoring systems. Six studies reported the stratification of outcomes by stone complexity, without specifically defining a scoring system. All studies reported some correlation between stone complexity and stone clearance. Correlation with complications was less clearly established, where investigated. This review does not allow us to firmly recommend one scoring system over the other. However, the quality of evidence supporting validation of the Guy's Stone Score is marginally superior, according to the criteria applied in this study. Further evaluation of the interobserver reliability of this scoring system is required.

Equating accelerometer estimates among youth: the Rosetta Stone 2

PubMed Central

Brazendale, Keith; Beets, Michael W.; Bornstein, Daniel B.; Moore, Justin B.; Pate, Russell R.; Weaver, Robert G.; Falck, Ryan S.; Chandler, Jessica L.; Andersen, Lars B.; Anderssen, Sigmund A.; Cardon, Greet; Cooper, Ashley; Davey, Rachel; Froberg, Karsten; Hallal, Pedro C.; Janz, Kathleen F.; Kordas, Katarzyna; Kriemler, Susi; Puder, Jardena J.; Reilly, John J.; Salmon, Jo; Sardinha, Luis B.; Timperio, Anna; van Sluijs, Esther MF

2017-01-01

Objectives Different accelerometer cutpoints used by different researchers often yields vastly different estimates of moderate-to-vigorous intensity physical activity (MVPA). This is recognized as cutpoint non-equivalence (CNE), which reduces the ability to accurately compare youth MVPA across studies. The objective of this research is to develop a cutpoint conversion system that standardizes minutes of MVPA for six different sets of published cutpoints. Design Secondary data analysis Methods Data from the International Children’s Accelerometer Database (ICAD; Spring 2014) consisting of 43,112 Actigraph accelerometer data files from 21 worldwide studies (children 3-18 years, 61.5% female) were used to develop prediction equations for six sets of published cutpoints. Linear and non-linear modeling, using a leave one out cross-validation technique, was employed to develop equations to convert MVPA from one set of cutpoints into another. Bland Altman plots illustrate the agreement between actual MVPA and predicted MVPA values. Results Across the total sample, mean MVPA ranged from 29.7 MVPA min.d-1 (Puyau) to 126.1 MVPA min.d-1 (Freedson 3 METs). Across conversion equations, median absolute percent error was 12.6% (range: 1.3 to 30.1) and the proportion of variance explained ranged from 66.7% to 99.8%. Mean difference for the best performing prediction equation (VC from EV) was -0.110 min.d-1 (limits of agreement (LOA), -2.623 to 2.402). The mean difference for the worst performing prediction equation (FR3 from PY) was 34.76 min.d-1 (LOA, -60.392 to 129.910). Conclusions For six different sets of published cutpoints, the use of this equating system can assist individuals attempting to synthesize the growing body of literature on Actigraph, accelerometry-derived MVPA. PMID:25747468

Rosetta science operations in support of the Philae mission

NASA Astrophysics Data System (ADS)

Ashman, Mike; Barthélémy, Maud; O`Rourke, Laurence; Almeida, Miguel; Altobelli, Nicolas; Costa Sitjà, Marc; García Beteta, Juan José; Geiger, Bernhard; Grieger, Björn; Heather, David; Hoofs, Raymond; Küppers, Michael; Martin, Patrick; Moissl, Richard; Múñoz Crego, Claudio; Pérez-Ayúcar, Miguel; Sanchez Suarez, Eduardo; Taylor, Matt; Vallat, Claire

2016-08-01

The international Rosetta mission was launched on 2nd March 2004 and after its ten year journey, arrived at its target destination of comet 67P/Churyumov-Gerasimenko, during 2014. Following the January 2014 exit from a two and half year hibernation period, Rosetta approached and arrived at the comet in August 2014. In November 2014, the Philae lander was deployed from Rosetta onto the comet's surface after which the orbiter continued its approximately one and a half year comet escort phase. The Rosetta Science Ground Segment's primary roles within the project are to support the Project Scientist and the Science Working Team, in order to ensure the coordination, development, validation and delivery of the desired science operations plans and their associated operational products throughout the mission., whilst also providing support to the Principle Investigator teams (including the Philae lander team) in order to ensure the provision of adequate data to the Planetary Science Archive. The lead up to, and execution of, the November 2014 Philae landing, and the subsequent Philae activities through 2015, have presented numerous unique challenges to the project teams. This paper discusses these challenges, and more specifically, their impact on the overall mission science planning activities. It details how the Rosetta Science Ground Segment has addressed these issues in collaboration with the other project teams in order to accommodate Philae operations within the continually evolving Rosetta science planning process.

Correlating the magic numbers of inorganic nanomolecular assemblies with a {Pd84} molecular-ring Rosetta Stone

PubMed Central

Xu, Feng; Miras, Haralampos N.; Scullion, Rachel A.; Long, De-Liang; Thiel, Johannes; Cronin, Leroy

2012-01-01

Molecular self-assembly has often been suggested as the ultimate route for the bottom-up construction of building blocks atom-by-atom for functional nanotechnology, yet structural design or prediction of nanomolecular assemblies is still far from reach. Whereas nature uses complex machinery such as the ribosome, chemists use painstakingly engineered step-by-step approaches to build complex molecules but the size and complexity of such molecules, not to mention the accessible yields, can be limited. Herein we present the discovery of a palladium oxometalate {Pd84}-ring cluster 3.3 nm in diameter; [Pd84O42(OAc)28(PO4)42]70- ({Pd84} ≡ {Pd12}7) that is formed in water just by mixing two reagents at room temperature, giving crystals of the compound in just a few days. The structure of the {Pd84}-ring has sevenfold symmetry, comprises 196 building blocks, and we also show, using mass spectrometry, that a large library of other related nanostructures is present in solution. Finally, by analysis of the symmetry and the building block library that construct the {Pd84} we show that the correlation of the symmetry, subunit number, and overall cluster nuclearity can be used as a “Rosetta Stone” to rationalize the “magic numbers” defining a number of other systems. This is because the discovery of {Pd84} allows the relationship between seemingly unrelated families of molecular inorganic nanosystems to be decoded from the overall cluster magic-number nuclearity, to the symmetry and building blocks that define such structures allowing the prediction of other members of these nanocluster families. PMID:22753516

Ureteral wall thickness at the impacted ureteral stone site: a critical predictor for success rates after SWL.

PubMed

Sarica, Kemal; Kafkasli, Alper; Yazici, Özgür; Çetinel, Ali Cihangir; Demirkol, Mehmet Kutlu; Tuncer, Murat; Şahin, Cahit; Eryildirim, Bilal

2015-02-01

The aim of the study was to determine the possible predictive value of certain patient- and stone-related factors on the stone-free rates and auxiliary procedures after extracorporeal shock wave lithotripsy in patients with impacted proximal ureteral calculi. A total of 111 patients (86 male, 25 females M/F: 3.44/1) with impacted proximal ureteral stones treated with shock wave lithotripsy were evaluated. Cases were retrieved from a departmental shock wave lithotripsy database. Variables analyzed included BMI of the case, diameter of proximal ureter and renal pelvis, stone size and Hounsfield unit, ureteral wall thickness at the impacted stone site. Stone-free status on follow-up imaging at 3 months was considered a successful outcome. All patients had a single impacted proximal ureteral stone. While the mean age of the cases was 46 ± 13 years (range 26-79 years), mean stone size was 8.95 mm (5.3-15.1 mm). Following shock wave lithotripsy although 87 patients (78.4%) were completely stone-free at 3-month follow-up visit, 24 (21.6%) cases had residual fragments requiring further repeat procedures. Prediction of the final outcome of SWL in patients with impacted proximal ureteral stones is a challenging issue and our data did clearly indicate a highly significant relationship between ureteral wall thickness and the success rates of shock wave lithotripsy particularly in cases requiring additional procedures. Of all the evaluated stone- and patient-related factors, only ureteral wall thickness at the impacted stone site independently predicted shock wave lithotripsy success.

Uric acid stones increase the risk of chronic kidney disease.

PubMed

Li, Ching-Chia; Chien, Tsu-Ming; Wu, Wen-Jeng; Huang, Chun-Nung; Chou, Yii-Her

2018-02-28

The aim of this study was to compare the clinical characteristics of uric acid stones and their potential risk for chronic kidney disease (CKD). A total of 401 patients (196 with uric acid stone and 205 without) were enrolled from our database of patients with urolithiasis. We analyzed the clinical demographic features, stone location, urine chemistries, and renal function. There was a significant difference (p < 0.001) between the two groups in terms of age, with the higher mean age in the uric acid group. Patients with uric acid stones had much lower pH of urine (p < 0.001) and higher serum uric acid level (p = 0.002). Notably, those with uric acid stones had worse eGFR than those with non-uric acid stones. Multivariate analysis confirmed that age over 60 years (ORs = 9.19; 95% CI 3.5-24.3), female sex (ORs = 4.01; 95% CI 1.8-9.0), hyperuricemia (ORs = 8.47; 95% CI 1.6-43.5), and uric acid stone (OR = 2.86; 95% CI 1.2-6.7) were the independent predictors of poor prognoses in CKD. Therefore, an association exists between uric acid stones and higher prevalence of CKD. Patients with uric acid stones may need close monitoring of renal function during follow-up.

The Rosetta Science Archive: Status and Plans for Completing and Enhancing the Archive Content

NASA Astrophysics Data System (ADS)

Heather, D.; Barthelemy, M.; Fraga, D.; Grotheer, E.; O'Rourke, L.; Taylor, M.

2017-09-01

On 30 September 2016, Rosetta's signal flat-lined, confirming that the spacecraft had completed its incredible mission by landing on the surface of Comet 67P/Churyumov-Gerasimenko. Although this marked an end to the spacecraft's active operations, intensive work is still on-going with instrument teams preparing their final science data increments for delivery and ingestion into ESA's Planetary Science Archive (PSA). In addition to this, ESA is establishing contracts with a number of instrument teams to enhance and improve their data and documentation in an effort to provide the best long- term archive possible for the Rosetta mission. This presentation will outline the current status of the Rosetta archive, as well as highlighting some of the 'enhanced archiving' activities planned and underway with the various instrument teams on Rosetta to ensure the scientific legacy of the mission.

Epidemiologic insights into pediatric kidney stone disease.

PubMed

Matlaga, Brian R; Schaeffer, Anthony J; Novak, Thomas E; Trock, Bruce J

2010-12-01

The epidemiology of pediatric kidney stone has not yet been as rigorously defined as that of adult kidney stone disease. Herein, we review our recent epidemiologic works characterizing pediatric stone disease using the Kids' Inpatient Database (KID). Specifically we investigated the age and gender distribution of pediatric kidney stone disease, changes in disease prevalence over time, and medical comorbidities associated with this disorder. We identified patients by International Classification of Disease 9th Edition (ICD-9) codes for renal and ureteral calculi as the primary diagnosis. Medical comorbidities were identified using specific comorbidity software. Statistical comparisons between children with and without stone disease were performed. In the first decade of life, stone disease was more prevalent among males than females; however, in the second decade of life females were more commonly affected. Of note, there was a significant increase in treated stone disease across both genders between 1997 and 2003. We also found that the risk of kidney stone diagnosis in children younger than 6 years of age was significantly associated with hypertension and diabetes mellitus. The gender distribution among pediatric stone formers varies significantly by age, although overall females have a greater prevalence than males. There is also a strong association of stone disease and both diabetes and hypertension, although this was only observed in children less than 6 years of age. Taken all together, these findings suggest that urolithiasis in the young child is a complex systemic disease process.

The U.S. Rosetta Project: Mars Gravity Assist

NASA Technical Reports Server (NTRS)

Alexander, Claudia; Holmes, Dwight P.; Goldstein, R.; Parker, Joel

2008-01-01

Since launch on March 2, 2004, the International Rosetta Mission has flown by the Earth/Moon system one time and conducted several distant observations of comets, including support for the Deep Impact measurements of comet 9 P/Tempel 1. In 2007, Rosetta flew by Mars for a gravity assist, and conducted observations of the Martian upper atmosphere as well as extended observations, in support of the New Horizons Jupiter encounter, of the Jovian magnetotail and Io torus. In late 2007 Rosetta had its second encounter with the Earth/Moon system. NASA's contribution to the Rosetta mission consists of three hardware experiments, and the portion of the electronics package for a fourth, as well as the participation of an Interdisciplinary Scientist (IDS); backup tracking, telecommunications, and navigation assurance provided by the Deep Space Network (DSN); support for the scientific participation of U.S. investigators on non-U.S. PI-led experiments. Collectively these elements are known as the U.S. Rosetta Project. In this paper we will update the status of the instruments following the both the Mars and Earth/Moon gravity assists. In addition, we will present a summary of the science observations for both Mars and Jupiter. 12.

Forgetting of Foreign-Language Skills: A Corpus-Based Analysis of Online Tutoring Software.

PubMed

Ridgeway, Karl; Mozer, Michael C; Bowles, Anita R

2017-05-01

We explore the nature of forgetting in a corpus of 125,000 students learning Spanish using the Rosetta Stone ® foreign-language instruction software across 48 lessons. Students are tested on a lesson after its initial study and are then retested after a variable time lag. We observe forgetting consistent with power function decay at a rate that varies across lessons but not across students. We find that lessons which are better learned initially are forgotten more slowly, a correlation which likely reflects a latent cause such as the quality or difficulty of the lesson. We obtain improved predictive accuracy of the forgetting model by augmenting it with features that encode characteristics of a student's initial study of the lesson and the activities the student engaged in between the initial and delayed tests. The augmented model can predict 23.9% of the variance in an individual's score on the delayed test. We analyze which features best explain individual performance. Copyright © 2016 Cognitive Science Society, Inc.

DOSAGE DES ELEMENTS EN TRACE DES CALCAIRES AU SERVICE DE L'ARCHEOLOGIE

DOE Office of Scientific and Technical Information (OSTI.GOV)

BLANC,A.; HOLMES,L.; HARBOTTLE,G.

1998-05-01

Numerous quarries in the Lutetian limestone formations of the Paris Basin provided stone for the building and the decoration of monuments from antiquity to the present. To determine the origin of stone used for masonry and sculptures in these monuments, a team of geologists and archaeologists has investigated 300 quarries and collected 2,300 samples. Petrographic and paleontologic examination of thin sections allows geologists to distinguish Lutetian limestones from Jurassic and Cretaceous limestones. Geologists also seek to formulate hypotheses regarding the origin of Lutetian limestones used for building and sculpture in the Paris region. In the search for the sources ofmore » building and sculptural stone, the analytical methods of geologists are limited because often several quarries produce the same lithofacies. A new tool is now available, however, to attack questions of provenance raised by art historians. Because limestones from different sources have distinctive patterns of trace-element concentrations, compositional analysis by neutron activation allows them to compare building or sculptural stone from one monument with stone from quarries or other monuments. This analytical method subjects a powdered limestone sample to standard neutron activation analysis procedures at Brookhaven National Laboratory. With the help of computer programs, the compositional fingerprints of Lutetian limestones can be determined and stored in a database. The limestone database contains data for approximately 2,100 samples from monuments, sculptures and quarries. It is particularly rich in samples from the Paris Basin.« less

Rosetta CONSERT operations and data analysis preparation: simulation software tools.

NASA Astrophysics Data System (ADS)

Rogez, Yves; Hérique, Alain; Cardiet, Maël; Zine, Sonia; Westphal, Mathieu; Micallef, Mickael; Berquin, Yann; Kofman, Wlodek

2014-05-01

The CONSERT experiment onboard Rosetta and Philae will perform the tomography of the 67P/CG comet nucleus by measuring radio waves transmission from the Rosetta S/C to the Philae Lander. The accurate analysis of travel time measurements will deliver unique knowledge of the nucleus interior dielectric properties. The challenging complexity of CONSERT operations requirements, combining both Rosetta and Philae, allows only a few set of opportunities to acquire data. Thus, we need a fine analysis of the impact of Rosetta trajectory, Philae position and comet shape on CONSERT measurements, in order to take optimal decisions in a short time. The integration of simulation results and mission parameters provides synthetic information to evaluate performances and risks for each opportunity. The preparation of CONSERT measurements before space operations is a key to achieve the best science return of the experiment. In addition, during Rosetta space operations, these software tools will allow a "real-time" first analysis of the latest measurements to improve the next acquisition sequences. The software tools themselves are built around a 3D electromagnetic radio wave simulation, taking into account the signal polarization. It is based on ray-tracing algorithms specifically designed for quick orbit analysis and radar signal generation. This allows computation on big domains relatively to the wavelength. The extensive use of 3D visualization tools provides comprehensive and synthetic views of the results. The software suite is designed to be extended, after Rosetta operations, to the full 3D measurement data analysis using inversion methods.

Statistical compilation of NAPAP chemical erosion observations

USGS Publications Warehouse

Mossotti, Victor G.; Eldeeb, A. Raouf; Reddy, Michael M.; Fries, Terry L.; Coombs, Mary Jane; Schmiermund, Ron L.; Sherwood, Susan I.

2001-01-01

In the mid 1980s, the National Acid Precipitation Assessment Program (NAPAP), in cooperation with the National Park Service (NPS) and the U.S. Geological Survey (USGS), initiated a Materials Research Program (MRP) that included a series of field and laboratory studies with the broad objective of providing scientific information on acid rain effects on calcareous building stone. Among the several effects investigated, the chemical dissolution of limestone and marble by rainfall was given particular attention because of the pervasive appearance of erosion effects on cultural materials situated outdoors. In order to track the chemical erosion of stone objects in the field and in the laboratory, the Ca 2+ ion concentration was monitored in the runoff solution from a variety of test objects located both outdoors and under more controlled conditions in the laboratory. This report provides a graphical and statistical overview of the Ca 2+ chemistry in the runoff solutions from (1) five urban and rural sites (DC, NY, NJ, NC, and OH) established by the MRP for materials studies over the period 1984 to 1989, (2) subevent study at the New York MRP site, (3) in situ study of limestone and marble monuments at Gettysburg, (4) laboratory experiments on calcite dissolution conducted by Baedecker, (5) laboratory simulations by Schmiermund, and (6) laboratory investigation of the surface reactivity of calcareous stone conducted by Fries and Mossotti. The graphical representations provided a means for identifying erroneous data that can randomly appear in a database when field operations are semi-automated; a purged database suitable for the evaluation of quantitative models of stone erosion is appended to this report. An analysis of the sources of statistical variability in the data revealed that the rate of stone erosion is weakly dependent on the type of calcareous stone, the ambient temperature, and the H + concentration delivered in the incident rain. The analysis also showed that the rate of stone erosion is strongly dependent on the rain-delivery conditions and on the surface morphology and orientation.

Natural radioactivity in building materials in the European Union: a database and an estimate of radiological significance.

PubMed

Trevisi, R; Risica, S; D'Alessandro, M; Paradiso, D; Nuccetelli, C

2012-02-01

The authors set up a database of activity concentration measurements of natural radionuclides (²²⁶Ra, ²³²Th and ⁴⁰K) in building material. It contains about 10,000 samples of both bulk material (bricks, concrete, cement, natural- and phosphogypsum, sedimentary and igneous bulk stones) and superficial material (igneous and metamorphic stones) used in the construction industry in most European Union Member States. The database allowed the authors to calculate the activity concentration index I--suggested by a European technical guidance document and recently used as a basis for elaborating the draft Euratom Basic Safety Standards Directive--for bricks, concrete and phosphogypsum used in the European Union. Moreover, the percentage could be assessed of materials possibly subject to restrictions, if either of the two dose criteria proposed by the technical guidance were to be adopted. Copyright © 2011 Elsevier Ltd. All rights reserved.

A clinical nomogram to predict the successful shock wave lithotripsy of renal and ureteral calculi.

PubMed

Wiesenthal, Joshua D; Ghiculete, Daniela; Ray, A Andrew; Honey, R John D'A; Pace, Kenneth T

2011-08-01

Although shock wave lithotripsy is dependent on patient and stone related factors, there are few reliable algorithms predictive of its success. In this study we develop a comprehensive nomogram to predict renal and ureteral stone shock wave lithotripsy outcomes. During a 5-year period data from patients treated at our lithotripsy unit were reviewed. Analysis was restricted to patients with a solitary renal or ureteral calculus 20 mm or less. Demographic, stone, patient, treatment and 3-month followup data were collected from a prospective database. All patients were treated using the Philips Lithotron® lithotripter. A total of 422 patients (69.7% male) were analyzed. Mean stone size was 52.3±39.3 mm2 for ureteral stones and 78.9±77.3 mm2 for renal stones, with 95 (43.6%) of the renal stones located in the lower pole. The single treatment success rates for ureteral and renal stones were 60.3% and 70.2%, respectively. On univariate analysis predictors of shock wave lithotripsy success, regardless of stone location, were age (p=0.01), body mass index (p=0.01), stone size (p<0.01), mean stone density (p<0.01) and skin to stone distance (p<0.01). By multivariate logistic regression for renal calculi, age, stone area and skin to stone distance were significant predictors with an AUC of 0.75. For ureteral calculi predictive factors included body mass index and stone size (AUC 0.70). Patient and stone parameters have been identified to create a nomogram that predicts shock wave lithotripsy outcomes using the Lithotron lithotripter, which can facilitate optimal treatment based decisions and provide patients with more accurate single treatment success rates for shock wave lithotripsy tailored to patient specific situations. Copyright © 2011 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Model of Dust Thermal Emission of Comet 67p-Churyumov-Gerasimenko for the Rosetta-MIRO Instrument

NASA Technical Reports Server (NTRS)

Gicquel, Adeline; Bockelee-Morvan, Dominique; Leyrat, Cedric; Zakharov, Vladimir; Crovisier, Jacques; Biver, Nicolas; Gulkis, Samuel

2013-01-01

The ESA's Rosetta spacecraft will arrive at comet 67P/Churyumov-Gerasimenko in 2014. The study of gas and dust emission is primary objective of several instruments on the Rosetta spacecraft, including the Microwave Instrument for the Rosetta Orbiter (MIRO). We developed a model of dust thermal emission to estimate the detectability of dust in the vicinity of the nucleus with MIRO. Our model computes the power received by the MIRO antenna in limb viewing as a function of the geometry of the observations and the physical properties of the grains. We show that detection in the millimeter and submillimeter channels can be achieved near perihelion.

Mathematical model to estimate risk of calcium-containing renal stones

NASA Technical Reports Server (NTRS)

Pietrzyk, R. A.; Feiveson, A. H.; Whitson, P. A.

1999-01-01

BACKGROUND/AIMS: Astronauts exposed to microgravity during the course of spaceflight undergo physiologic changes that alter the urinary environment so as to increase the risk of renal stone formation. This study was undertaken to identify a simple method with which to evaluate the potential risk of renal stone development during spaceflight. METHOD: We used a large database of urinary risk factors obtained from 323 astronauts before and after spaceflight to generate a mathematical model with which to predict the urinary supersaturation of calcium stone forming salts. RESULT: This model, which involves the fewest possible analytical variables (urinary calcium, citrate, oxalate, phosphorus, and total volume), reliably and accurately predicted the urinary supersaturation of the calcium stone forming salts when compared to results obtained from a group of 6 astronauts who collected urine during flight. CONCLUSIONS: The use of this model will simplify both routine medical monitoring during spaceflight as well as the evaluation of countermeasures designed to minimize renal stone development. This model also can be used for Earth-based applications in which access to analytical resources is limited.

Data Package for Secondary Waste Form Down-Selection—Cast Stone

DOE Office of Scientific and Technical Information (OSTI.GOV)

Serne, R. Jeffrey; Westsik, Joseph H.

2011-09-05

Available literature on Cast Stone and Saltstone was reviewed with an emphasis on determining how Cast Stone and related grout waste forms performed in relationship to various criteria that will be used to decide whether a specific type of waste form meets acceptance criteria for disposal in the Integrated Disposal Facility (IDF) at Hanford. After the critical review of the Cast Stone/Saltstone literature, we conclude that Cast Stone is a good candidate waste form for further consideration. Cast stone meets the target IDF acceptance criteria for compressive strength, no free liquids, TCLP leachate are below the UTS permissible concentrations andmore » leach rates for Na and Tc-99 are suiteably low. The cost of starting ingredients and equipment necessary to generate Cast Stone waste forms with secondary waste streams are low and the Cast Stone dry blend formulation can be tailored to accommodate variations in liquid waste stream compositions. The database for Cast Stone short-term performance is quite extensive compared to the other three candidate waste solidification processes. The solidification of liquid wastes in Cast Stone is a mature process in comparison to the other three candidates. Successful production of Cast Stone or Saltstone has been demonstrated from lab-scale monoliths with volumes of cm3 through m3 sized blocks to 210-liter sized drums all the way to the large pours into vaults at Savannah River. To date over 9 million gallons of low activity liquid waste has been solidified and disposed in concrete vaults at Savannah River.« less

A Survey of Object-Oriented Database Technology

DTIC Science & Technology

1990-05-01

now mention briefly the various security and autho- rization schemes provided by GEMSTONE. 1. Login Authorization. There are two ways to login to...GemStone- through the OPAL programming environment or through the GemStone C interface. A user ID and password is required in both cases to login . 2. Name...lIlj A. Black. Object structure in the Emerald system. Proc. Ist Intl. Conf. on Objcct- Oriented Programming Systems, Languages and Applications, pp

Minimally Invasive Surgical Ureterolithotomy Versus Ureteroscopic Lithotripsy for Large Ureteric Stones: A Systematic Review and Meta-analysis of the Literature.

PubMed

Kallidonis, Panagiotis; Ntasiotis, Panteleimon; Knoll, Thomas; Sarica, Kemal; Papatsoris, Athanasios; Somani, Bhaskar K; Greco, Francesco; Aboumarzouk, Omar M; Álvarez-Maestro, Mario; Sanguedolce, Francesco

2017-12-01

The management of large ureteric stones represents a technical and clinical challenge. To investigate the safety and efficacy of minimally invasive surgical ureterolithotomy (MISU) in comparison with ureteroscopic lithotripsy (URS) for the treatment of large ureteric stones. The Preferred Reporting Items for Systematic Review and Meta-analyses (PRISMA) guidelines were followed for the conduction of the study, which was registered in the PROSPERO database. Search string was "(laparoscop* OR retroperito* OR robot*) AND ureterolitho*"; database scope included PubMed, SCOPUS, Cochrane, and EMBASE. Primary end points were the stone-free (SFR) and complications rates. Secondary end points included operative time and hospital stay. Subgroup analyses were performed for stones 1-2 and >2cm, as well as different lithotripters and ureteroscopes. Meta-analysis and forest-plot diagrams were performed with the RevMan 5.3.5 software. After screening 673 publications, seven randomized controlled trials were eligible to be included in the meta-analysis. A total of 778 patients were pooled after the elimination of the dropouts. No robotic cohorts were found. Only upper ureteral stones were treated in the included studies. The SFR at discharge and 3 mo was higher with MISU with odds ratios of 6.30 (95% confidence interval [CI]: 3.05, 13.01; I 2 =0%) and 5.34 (95% CI: 2.41, 8.81; I 2 =0%), respectively. The most common complications for MISU and URS were conversion to open surgery and stone migration to the renal pelvis, respectively. Favorable results in terms of operative time were observed in the case of URS with a mean difference of 29.5min (95% CI: 14.74, 44.26; I 2 =98%). Hospitalization time was favorable in the case of URS with a mean difference of 2.08 days (95% CI: 0.96, 3.20; I 2 =99%). This meta-analysis showed a significantly higher SFR at discharge and 3 mo for MISU in comparison with URS when upper ureteral stones were treated. Operative and hospitalization time favored URS over MISU. The current study investigated the literature on the minimally invasive management of large ureteric stones. The available evidence shows that both ureteroscopic lithotripsy and minimally invasive surgical ureterolithotomy could be considered for the treatment of these stones with similar results. The selection of the approach should be based on the advantages and disadvantages of each technique. Copyright © 2017 European Association of Urology. All rights reserved.

Radiative Transfer Simulations of Earth Spectra as Registered by ROSETTA/VIRTIS

NASA Astrophysics Data System (ADS)

Hurley, Jane; Irwin, P.; Adriani, A.; Moriconi, M.; Oliva, F.; Coradini, A.

2010-10-01

Rosetta, part of ESA's Horizon 2000 programme, will orbit and land on the comet 67P/Churyumov-Gerasimenko in May 2014. However, launched in March 2004, its trajectory has thus far muchly consisted of a series of planetary fly-bys and gravitational assists using Mars (2007) and Earth (March 2005, 2007 and 2009). During these close fly-bys Rosetta captured measurements of these planets - and of particular interest are those registed by the Visual Infrared Thermal Imaging Spectrometer VIRTIS of Earth, which were taken to help calibrate VIRTIS. Rosetta/VIRTIS measures at high spectral resolution from 0.25 - 5.0 microns, a spectral range which has been well studied by Earth observing instruments such as Meteosat Second Generation Spinning Enhanced Visible and Infrared Imager (MSG/SEVIRI) and the Advanced Along-Track Scanning Radiometer (AATSR). Earth observing instruments, whilst having superior spatio-temporal coverage to the data provided during the Rosetta/VIRTIS fly-bys, are typically constrained to measuring in only a few spectral channels. Hence, Rosetta/VIRTIS should yield more detailed spectral information than these instruments - and is a good candidate for intercomparison studies. To this end, the radiative transfer software NEMESIS (Irwin et al., 2009) is employed for the first time on Earth simulations, having been used extensively for other bodies such as Venus, Mars, Jupiter, Saturn, Neptune, Uranus and Titan. This work compares Rosetta/VIRTIS measurements with NEMESIS-simulated spectra, concentrating on quantifying the ability of NEMESIS to reproduce spectral features associated with different surface topographies (such as ocean, desert and vegetation) in combination with clear and cloudy atmospheric states. Preliminary estimations of temperature and trace-species concentrations and distributions are presented as sample products.

Live Blogging Science News: The Rosetta Mission

NASA Astrophysics Data System (ADS)

Clark, S.

2016-03-01

When one of the world's most popular online news websites decides to cover a space science event live, you know that something big is brewing. Stuart Clark reports on how live blogging can be used for science reporting and how an idea that was triggered by his observations during the Rosetta flyby of the asteroid Lutetia and the landing of the Curiosity rover on Mars led to him live blogging two of Rosetta's most memorable occasions for The Guardian newspaper.

A Parametric Rosetta Energy Function Analysis with LK Peptides on SAM Surfaces.

PubMed

Lubin, Joseph H; Pacella, Michael S; Gray, Jeffrey J

2018-05-08

Although structures have been determined for many soluble proteins and an increasing number of membrane proteins, experimental structure determination methods are limited for complexes of proteins and solid surfaces. An economical alternative or complement to experimental structure determination is molecular simulation. Rosetta is one software suite that models protein-surface interactions, but Rosetta is normally benchmarked on soluble proteins. For surface interactions, the validity of the energy function is uncertain because it is a combination of independent parameters from energy functions developed separately for solution proteins and mineral surfaces. Here, we assess the performance of the RosettaSurface algorithm and test the accuracy of its energy function by modeling the adsorption of leucine/lysine (LK)-repeat peptides on methyl- and carboxy-terminated self-assembled monolayers (SAMs). We investigated how RosettaSurface predictions for this system compare with the experimental results, which showed that on both surfaces, LK-α peptides folded into helices and LK-β peptides held extended structures. Utilizing this model system, we performed a parametric analysis of Rosetta's Talaris energy function and determined that adjusting solvation parameters offered improved predictive accuracy. Simultaneously increasing lysine carbon hydrophilicity and the hydrophobicity of the surface methyl head groups yielded computational predictions most closely matching the experimental results. De novo models still should be interpreted skeptically unless bolstered in an integrative approach with experimental data.

In Situ Space Gas Dynamic Measurements by the ROSINA Comet Pressure Sensor COPS Onboard Rosetta Spacecraft

NASA Astrophysics Data System (ADS)

Tzou, Chia-Yu; Altwegg, Kathrin; Fiethe, Björn; Gasc, Sébastien; Rubin, Martin

2015-04-01

Rosetta is part of the cornerstone missions executed by the European Space Agency. It is the first space mission to orbit and also land on a comet. The Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) is one of the core payloads on board of the Rosetta spacecraft [Balsiger et al, 2007]. ROSINA's main objective is to determine the major atmospheric and ionospheric composition in the coma and to investigate the gas dynamics around the comet. ROSINA consists of two mass spectrometers and a pressure sensor. The COmet Pressure Sensor (COPS) includes two gauges: the "nude gauge" measures total neutral density in the coma and the "ram gauge" measures the dynamic pressure of the cometary gas flux. The combination of these two gauges makes COPS capable to derive the gas dynamics (velocity and temperature) at the location of the spacecraft. Over several months Rosetta has been carrying out a close study of comet 67P/Churyumov-Gerasimenko. In early August 2014 COPS detected the faint and expanding atmosphere of the comet while it was still outside of 3.5 AU from the Sun. We will present ROSINA COPS observations of the evolution and gas dynamics of the cometary coma following these first observations until spring 2015. Reference: Balsiger, H. et al.: ROSINA-Rosetta Orbiter Spectrometer for Ion and Neutral Analysis, Space Science Reviews, Vol. 128, 745-801, 2007.

Performance of the WeNMR CS-Rosetta3 web server in CASD-NMR.

PubMed

van der Schot, Gijs; Bonvin, Alexandre M J J

2015-08-01

We present here the performance of the WeNMR CS-Rosetta3 web server in CASD-NMR, the critical assessment of automated structure determination by NMR. The CS-Rosetta server uses only chemical shifts for structure prediction, in combination, when available, with a post-scoring procedure based on unassigned NOE lists (Huang et al. in J Am Chem Soc 127:1665-1674, 2005b, doi: 10.1021/ja047109h). We compare the original submissions using a previous version of the server based on Rosetta version 2.6 with recalculated targets using the new R3FP fragment picker for fragment selection and implementing a new annotation of prediction reliability (van der Schot et al. in J Biomol NMR 57:27-35, 2013, doi: 10.1007/s10858-013-9762-6), both implemented in the CS-Rosetta3 WeNMR server. In this second round of CASD-NMR, the WeNMR CS-Rosetta server has demonstrated a much better performance than in the first round since only converged targets were submitted. Further, recalculation of all CASD-NMR targets using the new version of the server demonstrates that our new annotation of prediction quality is giving reliable results. Predictions annotated as weak are often found to provide useful models, but only for a fraction of the sequence, and should therefore only be used with caution.

UbSRD: The Ubiquitin Structural Relational Database.

PubMed

Harrison, Joseph S; Jacobs, Tim M; Houlihan, Kevin; Van Doorslaer, Koenraad; Kuhlman, Brian

2016-02-22

The structurally defined ubiquitin-like homology fold (UBL) can engage in several unique protein-protein interactions and many of these complexes have been characterized with high-resolution techniques. Using Rosetta's structural classification tools, we have created the Ubiquitin Structural Relational Database (UbSRD), an SQL database of features for all 509 UBL-containing structures in the PDB, allowing users to browse these structures by protein-protein interaction and providing a platform for quantitative analysis of structural features. We used UbSRD to define the recognition features of ubiquitin (UBQ) and SUMO observed in the PDB and the orientation of the UBQ tail while interacting with certain types of proteins. While some of the interaction surfaces on UBQ and SUMO overlap, each molecule has distinct features that aid in molecular discrimination. Additionally, we find that the UBQ tail is malleable and can adopt a variety of conformations upon binding. UbSRD is accessible as an online resource at rosettadesign.med.unc.edu/ubsrd. Copyright © 2015 Elsevier Ltd. All rights reserved.

The 67P/Churyumov-Gerasimenko observation campaign in support of the Rosetta mission.

PubMed

Snodgrass, C; A'Hearn, M F; Aceituno, F; Afanasiev, V; Bagnulo, S; Bauer, J; Bergond, G; Besse, S; Biver, N; Bodewits, D; Boehnhardt, H; Bonev, B P; Borisov, G; Carry, B; Casanova, V; Cochran, A; Conn, B C; Davidsson, B; Davies, J K; de León, J; de Mooij, E; de Val-Borro, M; Delacruz, M; DiSanti, M A; Drew, J E; Duffard, R; Edberg, N J T; Faggi, S; Feaga, L; Fitzsimmons, A; Fujiwara, H; Gibb, E L; Gillon, M; Green, S F; Guijarro, A; Guilbert-Lepoutre, A; Gutiérrez, P J; Hadamcik, E; Hainaut, O; Haque, S; Hedrosa, R; Hines, D; Hopp, U; Hoyo, F; Hutsemékers, D; Hyland, M; Ivanova, O; Jehin, E; Jones, G H; Keane, J V; Kelley, M S P; Kiselev, N; Kleyna, J; Kluge, M; Knight, M M; Kokotanekova, R; Koschny, D; Kramer, E A; López-Moreno, J J; Lacerda, P; Lara, L M; Lasue, J; Lehto, H J; Levasseur-Regourd, A C; Licandro, J; Lin, Z Y; Lister, T; Lowry, S C; Mainzer, A; Manfroid, J; Marchant, J; McKay, A J; McNeill, A; Meech, K J; Micheli, M; Mohammed, I; Monguió, M; Moreno, F; Muñoz, O; Mumma, M J; Nikolov, P; Opitom, C; Ortiz, J L; Paganini, L; Pajuelo, M; Pozuelos, F J; Protopapa, S; Pursimo, T; Rajkumar, B; Ramanjooloo, Y; Ramos, E; Ries, C; Riffeser, A; Rosenbush, V; Rousselot, P; Ryan, E L; Santos-Sanz, P; Schleicher, D G; Schmidt, M; Schulz, R; Sen, A K; Somero, A; Sota, A; Stinson, A; Sunshine, J M; Thompson, A; Tozzi, G P; Tubiana, C; Villanueva, G L; Wang, X; Wooden, D H; Yagi, M; Yang, B; Zaprudin, B; Zegmott, T J

2017-07-13

We present a summary of the campaign of remote observations that supported the European Space Agency's Rosetta mission. Telescopes across the globe (and in space) followed comet 67P/Churyumov-Gerasimenko from before Rosetta's arrival until nearly the end of the mission in September 2016. These provided essential data for mission planning, large-scale context information for the coma and tails beyond the spacecraft and a way to directly compare 67P with other comets. The observations revealed 67P to be a relatively 'well-behaved' comet, typical of Jupiter family comets and with activity patterns that repeat from orbit to orbit. Comparison between this large collection of telescopic observations and the in situ results from Rosetta will allow us to better understand comet coma chemistry and structure. This work is just beginning as the mission ends-in this paper, we present a summary of the ground-based observations and early results, and point to many questions that will be addressed in future studies.This article is part of the themed issue 'Cometary science after Rosetta'. © 2017 The Author(s).

Urine specific gravity and water hardness in relation to urolithiasis in persons with spinal cord injury.

PubMed

Chen, Y; Roseman, J M; Funkhouser, E; DeVivo, M J

2001-11-01

A matched case-control study. To clarify the influence of urine specific gravity and drinking water quality on the formation of urinary stones in persons with spinal cord injury (SCI). A rehabilitation center within a university hospital. Between 1992 and 1998, 63 stone cases (31 kidney, 27 bladder, and five both) and 289 age-duration-matched controls were recruited from a cohort of SCI patients enrolled in an on-going longitudinal study. Data on urine specific gravity and other characteristics of study participants were retrieved from the database and medical charts. Community water supply information was provided by the Alabama Department of Environmental Management. Multivariable conditional logistic regression analysis was performed to evaluate the association with stone formation. SCI individuals who had urinary stones were more likely than control subjects to use indwelling catheters and have decreased renal function. The occurrence of stones was not significantly related to gender, race, severity of injury, urinary tract infection, nor urine pH. After controlling for the potential confounding from other factors, a continuously increasing stone occurrence with increasing specific gravity was observed (P=0.05); this association was stronger for kidney (odds Ratio [OR]=1.8 per 0.010 g/cm(3)) versus bladder stones (OR=1.2) and for recurrent (OR=2.0) versus first stones (OR=1.5). Increased water hardness was not significantly associated with a decreased stone occurrence. Study results suggest that maintaining urine specific gravity below a certain level might reduce the occurrence of urinary stones. This could be easily achieved by using a dipstick for self-feedback along with appropriate fluid intake. For persons with SCI who are at an increased risk of a devastating stone disease, this prophylactic approach could be very cost-effective; however, this requires further confirmation.

High-resolution comparative modeling with RosettaCM.

PubMed

Song, Yifan; DiMaio, Frank; Wang, Ray Yu-Ruei; Kim, David; Miles, Chris; Brunette, Tj; Thompson, James; Baker, David

2013-10-08

We describe an improved method for comparative modeling, RosettaCM, which optimizes a physically realistic all-atom energy function over the conformational space defined by homologous structures. Given a set of sequence alignments, RosettaCM assembles topologies by recombining aligned segments in Cartesian space and building unaligned regions de novo in torsion space. The junctions between segments are regularized using a loop closure method combining fragment superposition with gradient-based minimization. The energies of the resulting models are optimized by all-atom refinement, and the most representative low-energy model is selected. The CASP10 experiment suggests that RosettaCM yields models with more accurate side-chain and backbone conformations than other methods when the sequence identity to the templates is greater than ∼15%. Copyright © 2013 Elsevier Ltd. All rights reserved.

Natural stones of historic and future importance in Sweden

NASA Astrophysics Data System (ADS)

Schouenborg, Björn; Andersson, Jenny; Göransson, Mattias

2013-04-01

Several activities and responsibilities of the Geological Survey of Sweden (SGU) are related to the work of the newly formed international Heritage Stone Task Group (HSTG) for designating historically important stones. SGU is among other things a referral organization, frequently dealing with the preparation of statements in connection with the quarrying permit applications of stone producers. When preparing these statements, SGU takes into account a number of parameters, e.g. the importance for local and regional business development, historic importance, area of occurrence, quality of the geological documentation of the stone type, peculiarities of the stone types and technical properties relevant for the intended use. Traditionally, SGU has not worked with bedrock mapping looking at the potential of natural stones production but more commonly looking at the potential production of aggregates, industrial minerals and metals. The competence is, therefore, presently being built up with new databases over important natural stone types and definition of criteria for their selection etc. In this respect the criteria defined by the HSTG provide important help. This work goes hand in hand with the task of proposing stone-deposits and quarries of "national interest". The criteria for selection of a stone type, quarry etc as one of national interest are currently being revised. SGU plays an important role in this work. However, the final decision and appointment lies in the hands of the Swedish Board of Housing, Building and Planning (Boverket), an authority dealing with sustainable land use and regional development, town and country planning. Boverket supervises how the planning legislation is handled by the municipal authorities and the county administrative boards. The two latter organizations are those in charge of giving extraction permits for stone quarrying. The "Hallandia gneiss", of SW Sweden, is described as a case story and presented in this paper. Keywords: Hallandia gneiss, natural stones, historic stones, urban planning and building

Hello, world: Harnessing social media for the Rosetta mission

NASA Astrophysics Data System (ADS)

Baldwin, Emily; Mignone, Claudia; O'Flaherty, Karen; Homfeld, Anne-Mareike; Bauer, Markus; McCaughrean, Mark

2015-04-01

The European Space Agency's (ESA) comet-chasing Rosetta mission was launched in 2004, before social media became a popular tool for mainstream communication. By harnessing a range of platforms for communicating the key messages of this unprecedented mission as it reached its destination ten years later, new audiences were reached and a global impact was achieved. Rosetta-specific social media accounts - @ESA_Rosetta on Twitter, the Rosetta Mission Facebook page and the rosettamission Instagram account - were developed during 2013/14 and used alongside the traditional reporting line of the main ESA website and the Rosetta blog to build awareness about the mission. Coordinated with ESA's existing social media channels (Flickr, YouTube, G+, Twitter, Facebook and Livestream) and with the support of ESA's country desks and Rosetta partner agency accounts (including @philae2014), information could be shared in a number of European languages, ensuring a wide reach across Europe - and the world. We discuss the roles of the various social media accounts in supporting and promoting the competitions and social media campaigns that were built around the key mission milestones of 2014: waking up from deep space hibernation (January), arriving at Comet 67P/Churyumov-Gerasimenko (August) and naming the landing site for Philae ahead of the landing event in November. We discuss the different approach to each channel, such as the first person twitter accounts, the dialogue with and between blog users, and the discussions held live via G+ Hangouts with leading scientists and spacecraft operators. We compare and contrast the audiences, the interaction we had with them and how challenges were overcome. We also use the science-fiction-meets-science-fact Ambition short movie, and its "undercover" dissemination on social media, as an example of how the profile of the Rosetta mission was raised in a unique way. By using a variety of social media platforms to target different audiences with specific content in a coordinated way, we have been able to share the human aspect of the mission, allowing our audiences to feel part of every step of the adventure.

A large 15 - year database analysis on the influence of age, gender, race, obesity and income on hospitalization rates due to stone disease.

PubMed

Mello, Marcos F; Marchini, Giovanni Scala; Câmara, Cesar; Danilovic, Alexandre; Levy, Renata; Eluf-Neto, José; Srougi, Miguel; Mazzucchi, Eduardo

2016-01-01

To assess the public hospitalization rate due to stone disease in a large developing nation for a 15-year period and its association with socio-demographic data. A retrospective database analysis of hospitalization rates in the Brazilian public health system was performed, searching for records with a diagnosis code of renal/ureteral calculi at admission between 1998-2012. Patients managed in an outpatient basis or private care were excluded. Socio-demographic data was attained and a temporal trend analysis was performed. The number of stone-related hospitalizations increased from 15.7%, although the population-adjusted hospitalization rate remained constant in 0.04%. Male:female proportion among hospitalized patients was stable (49.3%:50.7% in 1998; 49.2%:50.8% in 2012), though there was a significant reduction in the prevalence of male hospitalizations (-3.8%;p=0.041). In 2012, 38% of hospitalized patients due to stone disease had 40-59 years-old. The ≥80 years-old strata showed the most significant decrease (-43.44%;p=0.022), followed by the 20-39 (-23.17%;p < 0.001) and 0-19 years-old cohorts (-16.73%;p=0.012). Overall, the lowest relative hospitalization rates were found for yellow and indigenous individuals. The number of overweight/obese individuals increased significantly (+20.6%), accompanied by a +43.6% augment in the per capita income. A significant correlation was found only between income and obesity (R=0.64;p=0.017). The prevalence of stone disease requiring hospitalization in Brazil remains stable, with a balanced proportion between males and females. There is trend for decreased hospitalization rates of male, < 40 and ≥80 years-old individuals. Obesity and income have a more pronounced correlation with each other than with stone disease. Copyright® by the International Brazilian Journal of Urology.

RosettaHoles: rapid assessment of protein core packing for structure prediction, refinement, design, and validation.

PubMed

Sheffler, Will; Baker, David

2009-01-01

We present a novel method called RosettaHoles for visual and quantitative assessment of underpacking in the protein core. RosettaHoles generates a set of spherical cavity balls that fill the empty volume between atoms in the protein interior. For visualization, the cavity balls are aggregated into contiguous overlapping clusters and small cavities are discarded, leaving an uncluttered representation of the unfilled regions of space in a structure. For quantitative analysis, the cavity ball data are used to estimate the probability of observing a given cavity in a high-resolution crystal structure. RosettaHoles provides excellent discrimination between real and computationally generated structures, is predictive of incorrect regions in models, identifies problematic structures in the Protein Data Bank, and promises to be a useful validation tool for newly solved experimental structures.

RosettaHoles: Rapid assessment of protein core packing for structure prediction, refinement, design, and validation

PubMed Central

Sheffler, Will; Baker, David

2009-01-01

We present a novel method called RosettaHoles for visual and quantitative assessment of underpacking in the protein core. RosettaHoles generates a set of spherical cavity balls that fill the empty volume between atoms in the protein interior. For visualization, the cavity balls are aggregated into contiguous overlapping clusters and small cavities are discarded, leaving an uncluttered representation of the unfilled regions of space in a structure. For quantitative analysis, the cavity ball data are used to estimate the probability of observing a given cavity in a high-resolution crystal structure. RosettaHoles provides excellent discrimination between real and computationally generated structures, is predictive of incorrect regions in models, identifies problematic structures in the Protein Data Bank, and promises to be a useful validation tool for newly solved experimental structures. PMID:19177366

The final year of the Rosetta mission

NASA Astrophysics Data System (ADS)

Accomazzo, Andrea; Ferri, Paolo; Lodiot, Sylvain; Pellon-Bailon, Jose-Luis; Hubault, Armelle; Urbanek, Jakub; Kay, Ritchie; Eiblmaier, Matthias; Francisco, Tiago

2017-07-01

The International Rosetta Mission was launched on 2nd March 2004 on its 10 year journey to rendezvous with comet 67P Churyumov-Gerasimenko. Rosetta performed comet orbit insertion on the 6th of August 2014, after which it characterised the nucleus and orbited it at altitudes as low as a few kilometres. In November 2014 Rosetta delivered the lander Philae to perform the first soft landing ever on the surface of a comet. After this critical operation, Rosetta began the escort phase of the comet in its journey in the Solar System heading to the perihelion, reached in August 2015. Originally foreseen till the end of 2015, the mission was extended for another nine months to follow the comet on its outbound arc of the orbit. In view of the acquired experience and of the approaching end of mission the spacecraft was flown at much closer distances from the nucleus so that the scientific instruments had the chance to perform unique measurements. Following this phase of very close orbits, on the 30th of September 2016 Rosetta was set on a collision course trajectory with the comet to terminate the mission with a controlled impact. This paper describes the details of the extended mission phase and the issues encountered during these months. It also includes the changes implemented on the spacecraft and in the operations concept to optimise the remaining mission time. The paper also includes the lessons learned from this unique and complex mission phase.

Flexible ureterorenoscopy for lower pole stones: influence of the collecting system's anatomy.

PubMed

Jessen, Jan Peter; Honeck, Patrick; Knoll, Thomas; Wendt-Nordahl, Gunnar

2014-02-01

The impact of renal anatomy on the success rate of flexible ureterorenoscopy (fURS) for lower pole stones is less clear than it is on shock wave lithotripsy, for which it is a recognized influence factor. We analyzed safety and efficiency of fURS using modern endoscopes for lower pole stones dependent on the collecting system's configuration. We retrospectively evaluated a consecutive sample of 111 fURS for lower pole stones at our tertiary care center between January 2010 and September 2012 from our prospectively kept database. All procedures were performed with modern flexible ureterorenoscopes, nitinol baskets, holmium laser lithotripsy, and ureteral access sheaths whenever needed. The infundibular length (IL) and width (IW) and infundibulopelvic angle (IPA) were measured and the data were stratified for stone-free status and complications classified by the Clavien-Dindo scale. Univariate and multifactorial statistical analyses were performed. Correlation of operation time (OR-time) with anatomical parameters was conducted. Ninety-eight (88.3%) of the 111 patients were stone free after a single fURS. On multifactorial analysis, the stone size and IL had significant influence on the stone-free rate (SFR) (p<0.01), whereas IW did not. An acute IPA (<30°) also had significant influence (p=0.01). The incidence of complications and OR-time were not influenced by the pelvicaliceal anatomy. fURS is a safe and efficient treatment option for lower pole kidney stones. A long infundibulum and a very acute IPA (<30°) negatively affect the SFR. However, with second look procedures, a complete stone clearance is achievable even in case of unfavorable anatomic conditions. A narrow infundibulum has no negative effect while using modern endoscopes. The complication rate is not affected by the collecting system's anatomy.

Segmental Bile Duct-Targeted Liver Resection for Right-Sided Intrahepatic Stones.

PubMed

Li, Shao-Qiang; Hua, Yun-Peng; Shen, Shun-Li; Hu, Wen-Jie; Peng, Bao-Gang; Liang, Li-Jian

2015-07-01

Hepatectomy is a safe and effective treatment for intrahepatic stones (IHSs). However, the resection plane for right-sided stones distributed within 2 segments is obstacle because of atrophy-hypertrophy complex formation of the liver and difficult dissection of segmental pedicle within the Glissonean plate by conventional approach. Thus, we devised segmental bile duct-targeted liver resection (SBDLR) for IHS, which aimed at completely resection of diseased bile ducts. This study aimed to evaluate the outcomes of SBDLR for right-sided IHSs. From January 2009 to December 2013, 107 patients with IHS treated by SBDLR in our center were reviewed in a prospective database. Patients' intermediate and long-term outcomes after SBDLR were analyzed. A total of 40 (37.4%) patients with localized right-sided stone and 67 (62.7%) patients with bilateral stones underwent SBDLR alone and SBDLR combined with left-sided hepatectomy, respectively. There was no hospital mortality of this cohort of patients. The postoperative morbidity was 35.5%. The mean intraoperative blood loss was 414  mL (range: 100-2500). Twenty-one (19.6%) patients needed red blood cells transfusion. The intermediate stone clearance rate was 94.4%; the final clearance rate reached 100% after subsequent postoperative cholangioscopic lithotomy. Only 2.8% patients developed stone recurrence in a median follow-up period of 38.3 months. SBDLR is a safe and effective treatment for right-sided IHS distributed within 2 segments. It is especially suitable for a subgroup of patients with bilateral stones whose right-sided stones are within 2 segments and bilateral liver resection is needed.

The Risk of Coronary Heart Disease in Patients with Kidney Stones: A Systematic Review and Meta-analysis.

PubMed

Cheungpasitporn, Wisit; Thongprayoon, Charat; Mao, Michael A; O'Corragain, Oisin A; Edmonds, Peter J; Erickson, Stephen B

2014-11-01

The reported risk of coronary heart disease (CHD) in patients with a history of kidney stones is conflicting. The objective of this meta-analysis was to assess the association between a history of kidney stones and CHD risk. A literature search was performed using MEDLINE, EMBASE, and Cochrane Database of Systematic Reviews from inception until April 04, 2014. Studies that reported odds ratios or hazard ratios comparing the risk of CHD in patients with a history of kidney stones versus those without a history of kidney stones were included. Pooled risk ratios (RRs) and 95% confidence interval (CI) were calculated using a random-effect, generic inverse variance method. Seven study populations from four cohort studies and one cross-sectional study were identified and included in the data analysis. The pooled risk ratio (RR) of CHD in patients with kidney stones was 1.24 (95% CI, 1.10-1.40). This result remained significant (RR, 1.23 [95% CI, 1.08-1.41]) when the sensitivity analysis was restricted to only cohort studies. A history of kidney stones was associated with increased CHD risk in females (RR, 1.43 [95% CI, 1.12-1.82]), whereas the association was not significant in males (RR, 1.14 [95% CI, 0.94-1.38]). Our study demonstrates a statistically significant increased risk of CHD in female patients with prior kidney stones. This finding suggests that a history of kidney stones is a risk factor for CHD in females and may impact clinical management.

Prevalence of renal stones in an Italian urban population: a general practice-based study.

PubMed

Croppi, Emanuele; Ferraro, Pietro Manuel; Taddei, Luca; Gambaro, Giovanni

2012-10-01

Kidney stones represent a common condition characterized by significant morbidity and economic costs. The epidemiology of kidney stones is not completely understood and may vary substantially based on geographic, socioeconomic and clinical factors; the present study aims at defining the prevalence and diagnostic patterns of kidney stones in a cohort representative of the general population in Florence, Italy. A sample of 1,543 adult subjects, all Caucasians, was randomly selected from a population of over 25,000 subjects followed by 22 general practitioners (GPs). Subjects were administered a questionnaire requesting the patient's age and sex, any history of kidney stones and/or colics and the prescription of kidney ultrasound (US) examination. GPs data-bases were also interrogated. Crude and adjusted prevalence proportions and ratios (PRs) with corresponding 95% confidence intervals (CIs) were computed. Furthermore, the association between the practice pattern of each physician with respect to US prescription and the prevalence of kidney stones was investigated. The overall prevalence of kidney stones was 7.5% (95% confidence interval 6.2, 8.9%), increasing with age until 55-60 years and then decreasing. About 50% reported recurrent disease. There were no significant differences in prevalence among males and females. GPs who tended to prescribe more US examinations were more likely to have more patients with kidney stones (adjusted PR 1.80, 95% CI 1.11, 2.94; p = 0.020). The present study confirms both the high prevalence and the regional variability of kidney stones. Practice patterns may be involved in such variability.

The risk of kidney stones following bariatric surgery: a systematic review and meta-analysis.

PubMed

Thongprayoon, Charat; Cheungpasitporn, Wisit; Vijayvargiya, Priya; Anthanont, Pimjai; Erickson, Stephen B

2016-01-01

With rising prevalence of morbid obesity, the number of bariatric surgeries performed each year has been increasing worldwide. The objective of this meta-analysis was to assess the risk of kidney stones following bariatric surgery. A literature search was performed using MEDLINE, EMBASE, and Cochrane Database of Systematic Reviews from inception through July 2015. Only studies reporting relative risks, odd ratios or hazard ratios (HRs) to compare risk of kidney stones in patients who underwent bariatric surgery versus no surgery were included. Pooled risk ratios (RR) and 95% confidence interval (CI) were calculated using a random-effect, generic inverse variance method. Four studies (One randomized controlled trial and three cohort studies) with 11,348 patients were included in analysis to assess the risk of kidney stones following bariatric surgery. The pooled RR of kidney stones in patients undergoing bariatric surgery was 1.22 (95% CI, 0.63-2.35). The type of bariatric surgery subgroup analysis demonstrated an increased risk of kidney stones in patients following Roux-en-Y gastric bypass (RYGB) with the pooled RR of 1.73 (95% CI, 1.30-2.30) and a decreased risk of kidney stones in patients following restrictive procedures including laparoscopic banding or sleeve gastrectomy with the pooled RR of 0.37 (95% CI, 0.16-0.85). Our meta-analysis demonstrates an association between RYGB and increased risk of kidney stones. Restrictive bariatric surgery, on the other hand, may decrease kidney stone risk. Future study with long-term follow-up data is needed to confirm this potential benefit of restrictive bariatric surgery.

Comparison of shockwave lithotripsy and flexible ureteroscopy for the treatment of kidney stones in patients with a solitary kidney.

PubMed

Yuruk, Emrah; Binbay, Murat; Ozgor, Faruk; Sekerel, Levent; Berberoglu, Yalcin; Muslumanoglu, Ahmet Yaser

2015-04-01

To compare the outcomes of these minimally invasive procedures in this patient population. The database of our institution has been retrospectively reviewed, and medical records of urolithiasis patients with a solitary kidney who underwent flexible ureteroscopy (F-URS) or extracorporeal shock wave lithotripsy (SWL) between January 2009 and December 2012 were examined. Retreatment rates, complications, changes in estimated glomerular filtration rates (eGFRs), chronic kidney disease (CKD) stages, and stone-free rates were compared between the two groups. Stones of 48 patients (mean age: 48.8±15.4, range: 14-76) with solitary kidneys were treated with SWL (n=30, 62.5%) or F-URS (n=18, 37.5%). Patient demographics and stone related parameters were similar. The most common stone location was the pelvis in the SWL group (36.6%), whereas it was the pelvis and a calix in the F-URS group (38.8%). Complications and success rates were similar in both groups, however, patients in the SWL group needed more sessions to achieve stone clearance (2.2±0.89 vs 1.06±0.24, p=0.0001). Preoperative and postoperative eGFR and CKD stage changes were also similar. Both SWL and F-URS are effective and safe techniques, which can be used for the treatment of stones in patients with solitary kidneys. However, patients treated with SWL need more sessions to achieve stone clearance.

Rosetta Mission Selfie at 10 Miles

NASA Image and Video Library

2014-11-12

The Philae lander of the European Space Agency Rosetta mission took this self-portrait of the spacecraft on Sept. 7, 2014, at a distance of about 10 miles 16 kilometers from comet 67P/Churyumov-Gerasimenko.

Rosetta Mission Selfie at 30 Miles

NASA Image and Video Library

2014-11-11

The Philae lander of the European Space Agency Rosetta mission took this self-portrait of the spacecraft on Sept. 7, 2014, at a distance of about 30 miles 50 kilometers from comet 67P/Churyumov-Gerasimenko.

Rosetta Comet Spreads its Jets

NASA Image and Video Library

2014-10-24

This image was taken by the Optical, Spectroscopic, and Infrared Remote Imaging System, Rosetta main onboard scientific imaging system, on Sept. 10, 2014. Jets of cometary activity can be seen along almost the entire body of the comet.

Comets and the origin of the solar system - Reading the Rosetta Stone

NASA Technical Reports Server (NTRS)

Mumma, Michael J.; Weissman, Paul R.; Stern, S. A.

1993-01-01

It is argued that, from the measured volatile abundances, comets formed at temperatures near or below about 60 K and possibly as low as about 25 K. Grains in Comet Halley were found to be of two types: silicates and organics. Isotopic evidence shows that Comet Halley formed from material with the same compositional mix as the rest of the solar system, and is consistent with comets having been a major contributor to the volatile reservoirs on the terrestrial planets. A variety of processes have been shown to modify and reprocess the outer layers of comets both during their long residence time in the Oort cloud and following their entry back into the planetary system. The most likely formation site for comets is in the Uranus-Neptune zone or just beyond, with dynamical ejection by the growing protoplanets to distant orbits to form the Oort cloud. A substantial flux of interstellar comets was likely created by the same process, and may be detectable if cometary formation is common in planetary systems around other stars.

Hormesis as a mechanistic approach to understanding herbal treatments in traditional Chinese medicine.

PubMed

Wang, Dali; Calabrese, Edward J; Lian, Baoling; Lin, Zhifen; Calabrese, Vittorio

2018-04-01

Traditional Chinese medicine (TCM) has been long practiced and is becoming ever more widely recognized as providing curative and/or healing treatments for a number of diseases and physiological conditions. This paper posits that herbal medicines used in TCM treatments may act through hormetic dose-response mechanisms. It is proposed that the stimulatory (i.e., low dose) and inhibitory (i.e., high dose) components of the hormetic dose response correspond to respective "regulating" and "curing" aspects of TCM herbal treatments. Specifically, the "regulating" functions promote adaptive or preventive responses, while "curing" treatments alleviate the clinical symptoms. Patterns of hormetic responses are described, and the applicability of these processes to herbal medicines of TCM are explicated. It is noted that a research agenda aimed at elucidating these mechanisms and patterns would be expansive and complex. However, we argue its value, in that hormesis may afford something akin to a Rosetta Stone with which to interpret, translate, and explain TCM herbology in ways that are aligned with biomedical perspectives that could enable a more integrative approach to medicine. Copyright © 2017 Elsevier Inc. All rights reserved.

GPCRM: a homology modeling web service with triple membrane-fitted quality assessment of GPCR models.

PubMed

Miszta, Przemyslaw; Pasznik, Pawel; Jakowiecki, Jakub; Sztyler, Agnieszka; Latek, Dorota; Filipek, Slawomir

2018-05-21

Due to the involvement of G protein-coupled receptors (GPCRs) in most of the physiological and pathological processes in humans they have been attracting a lot of attention from pharmaceutical industry as well as from scientific community. Therefore, the need for new, high quality structures of GPCRs is enormous. The updated homology modeling service GPCRM (http://gpcrm.biomodellab.eu/) meets those expectations by greatly reducing the execution time of submissions (from days to hours/minutes) with nearly the same average quality of obtained models. Additionally, due to three different scoring functions (Rosetta, Rosetta-MP, BCL::Score) it is possible to select accurate models for the required purposes: the structure of the binding site, the transmembrane domain or the overall shape of the receptor. Currently, no other web service for GPCR modeling provides this possibility. GPCRM is continually upgraded in a semi-automatic way and the number of template structures has increased from 20 in 2013 to over 90 including structures the same receptor with different ligands which can influence the structure not only in the on/off manner. Two types of protein viewers can be used for visual inspection of obtained models. The extended sortable tables with available templates provide links to external databases and display ligand-receptor interactions in visual form.

First Rosetta Radio Science Bistatic Radar Observations of 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Andert, Thomas P.; Remus, Stefan; Simpson, Richard A.; Pätzold, Martin; Asmar, Sami W.; Kahan, Daniel S.; Bird, Mike K.; Häusler, Bernd; Tellmann, Silvia

2015-04-01

The Rosetta spacecraft was successfully inserted on 6th August 2014 into orbit around comet 67P/Churyumov-Gerasimenko. In September Rosetta was placed into bound orbits with an initial distance of 30 km and a decreasing distance until the end October. After lander delivery, bound orbits were maintained again at 20 km and 30 km. One of the objectives of the Rosetta Radio Science Investigations (RSI) is to address the dielectric properties, small-scale roughness, and rotational state of the nucleus of the comet, which can be determined by means of a surface scattering experiment, also known as Bistatic Radar. The radio subsystem transmitter located on board the Rosetta spacecraft beams right circularly polarized radio signals at two wavelengths -3.6 cm (X-Band) and 13 cm (S-Band) - toward the nucleus surface. Part of the impinging radiation is then scattered toward a receiver at a ground station on Earth and recorded. On September 29th, 2014 the first Bistatic Radar experiment ever at a comet was successfully conducted. The distance between 67P/Churyumov-Gerasimenko and Rosetta was 20 km and both right circularly polarized (RCP) and left circularly polarized (LCP) reflected signals from the comet's surface in X-Band were detected during the experiment at the Goldstone complex of the NASA Deep Space Network. The ultra-stable oscillator (USO) on board Rosetta served during the experiment as a very stable reference frequency source. The direct and reflected signal were separated during the experiment by only a fraction of 1 Hz. The extreme stability of the USO allowed a detection and separation of the weak signals even on the required long integration times. Five additional Bistatic Radar experiments were conducted successfully between mid-October and mid-December 2014 with the 70-m DSN ground stations in Goldstone and Canberra at different distances to the comet (10 km, 20 km and 30 km) and reflected signals were observed in each case.

Comet 67P as seen by Rosetta/OSIRIS

NASA Astrophysics Data System (ADS)

Guettler, Carsten; Sierks, Holger; Barbieri, Cesare; Lamy, Philippe L.; Rodrigo, Rafael; Koschny, Detlef; Rickman, Hans; OSIRIS Team

2016-10-01

In September 2016, the ESA Rosetta mission will come to its ending. Having escorted comet 67P for more than two years, the scientific camera system OSIRIS onboard Rosetta witnessed all important milestones of the mission: after the first characterization and the Philae landing we saw the comet's activity increasing while it was approaching the Sun. During the peak of activity around perihel in August 2015, the spacecraft had to retreat to a safe distance but we witnessed strong but predictable jet activity and, at the same time, short lived eruptions, some of these being big outbursts. When the activity declined post perihelion and allowed the spacecraft to go back closer, comparison with the early characterization revealed numerous morphologic changes on the surface, which can be attributed to the strong activity during perihelion passage.The paper will give an overview of latest OSIRIS science and discoveries including the morphology, activity, and surface changes mentioned above. Implications on the nature of the comet and its mechanisms will be drawn from these. The current plan for the mission is to go to very close distances in August and September 2016 and finally land the spacecraft on 67P.Acknowledgements: OSIRIS was built by a consortium led by the Max-Planck-Institut für Sonnensystemforschung, Göttingen, Germany, in collaboration with CISAS, University of Padova, Italy, the Laboratoire d'Astrophysique de Marseille, France, the Instituto de Astrofísica de Andalucia, CSIC, Granada, Spain, the Scientific Support Office of the European Space Agency, Noordwijk, The Netherlands, the Instituto Nacional de Técnica Aeroespacial, Madrid, Spain, the Universidad Politéchnica de Madrid, Spain, the Department of Physics and Astronomy of Uppsala University, Sweden, and the Institut für Datentechnik und Kommunikationsnetze der Technischen Universität Braunschweig, Germany.We thank the Rosetta Science Ground Segment at ESAC, the Rosetta Mission Operations Centre at ESOC and the Rosetta Project at ESTEC for their outstanding work enabling the science return of the Rosetta Mission.

Epidemiology of upper urinary tract stone disease in a Taiwanese population: a nationwide, population based study.

PubMed

Huang, Wei-Yi; Chen, Yu-Fen; Carter, Stacey; Chang, Hong-Chiang; Lan, Chung-Fu; Huang, Kuo-How

2013-06-01

We investigated the epidemiology of upper urinary tract stone disease in Taiwan using a nationwide, population based database. This study was based on the National Health Insurance Research Database of Taiwan, which contains data on all medical beneficiary claims from 22.72 million enrollees, accounting for almost 99% of the Taiwanese population. The Longitudinal Health Insurance Database 2005, a subset of the National Health Insurance Research Database, contains data on all medical benefit claims from 1997 through 2010 for a subset of 1 million beneficiaries randomly sampled from the 2005 enrollment file. For epidemiological analysis we selected subjects whose claims records included the diagnosis of upper urinary tract urolithiasis. The age adjusted rate of medical care visits for upper urinary tract urolithiasis decreased by 6.5% from 1,367/100,000 subjects in 1998 to 1,278/100,000 in 2010. There was a significantly decreasing trend during the 13-year period in visits from female and all subjects (r(2) = 0.86, p = 0.001 and r(2) = 0.52, p = 0.005, respectively). In contrast, an increasing trend was noted for male subjects (r(2) = 0.45, p = 0.012). The age adjusted prevalence in 2010 was 9.01%, 5.79% and 7.38% in male, female and all subjects, respectively. The overall recurrence rate at 1 and 5 years was 6.12% and 34.71%, respectively. Male subjects had a higher recurrence rate than female subjects. Our study provides important information on the epidemiology of upper urinary tract stone disease in Taiwan, helping to quantify the burden of urolithiasis and establish strategies to decrease the risk of urolithiasis. Copyright © 2013 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

De Novo Enzyme Design Using Rosetta3

PubMed Central

Richter, Florian; Leaver-Fay, Andrew; Khare, Sagar D.; Bjelic, Sinisa; Baker, David

2011-01-01

The Rosetta de novo enzyme design protocol has been used to design enzyme catalysts for a variety of chemical reactions, and in principle can be applied to any arbitrary chemical reaction of interest, The process has four stages: 1) choice of a catalytic mechanism and corresponding minimal model active site, 2) identification of sites in a set of scaffold proteins where this minimal active site can be realized, 3) optimization of the identities of the surrounding residues for stabilizing interactions with the transition state and primary catalytic residues, and 4) evaluation and ranking the resulting designed sequences. Stages two through four of this process can be carried out with the Rosetta package, while stage one needs to be done externally. Here, we demonstrate how to carry out the Rosetta enzyme design protocol from start to end in detail using for illustration the triosephosphate isomerase reaction. PMID:21603656

The structure of cometary dust - first results from the MIDAS Atomic Force Microscope onboard Rosetta

NASA Astrophysics Data System (ADS)

Bentley, M. S.; Torkar, K.; Romstedt, J.

2014-12-01

A decade after launch the European Space Agency's Rosetta spacecraft has finally arrived at comet 67P/Churyumov-Gerasimenko. Unlike previous cometary missions, Rosetta is not a flyby, limited to taking a snapshot of the comet at a single heliocentric distance. Instead, Rosetta intercepted the comet prior to the onset of major activity and will chart its evolution during its perihelion passage and beyond. Such a unique mission requires a unique payload; as well as the more typical remote sensing instruments, Rosetta also carries sensors to sample in situ the gas and dust environment. One of these instruments is MIDAS, an atomic force microscope designed to collect dust and image it in three dimensions with nanometre resolution. Equipped with an array of sharp tips, four of which are magnetised to allow magnetic force microscopy, MIDAS exposes targets to the incident flux after which they are moved to the microscope for analysis. As well as extending coverage of the dust size distribution down to the finest particles, MIDAS has the unique capability to determine the shape of pristine particles - to determine, for example, if they are compact or fluffy, and to look for features which may be diagnostic of their formation environment or evolution. The magnetic mode lets MIDAS probe samples for magnetic material and to map its location if present. Having been operating almost continuously after hibernation imaging empty targets before exposure, the first exposures were performed when Rosetta entered 30 km bound orbits. The first MIDAS images and analyses of collected dust grains are presented here.

Encounter of a different kind: Rosetta observes asteroid at close quarters

NASA Astrophysics Data System (ADS)

2008-09-01

ESA's comet chaser, Rosetta, last night flew by a small body in the main asteroid belt, asteroid Steins, collecting a wealth of information about this rare type of minor Solar System body. At 20:58 CEST (18:58 UT) last night, ESA's Rosetta probe approached asteroid 2867 Steins, coming to within a distance of only 800 km from it. Steins is Rosetta's first nominal scientific target in its 11½ year mission to ultimately explore the nucleus of Comet 67P/Churyumov-Gerasimenko. The success of this 'close' encounter was confirmed at 22:14 CEST, when ESA's ground control team at the European Space Operations Centre (ESOC) in Darmstadt, Germany, received initial telemetry from the spacecraft. During the flyby operations, Rosetta was out of reach as regards communication links because its antenna had to be turned away from Earth. At a distance of about 2.41 AU (360 million kilometres) from our planet, the radio signal from the probe took 20 minutes to reach the ground. Steins is a small asteroid of irregular shape with a diameter of only 4.6 km. It belongs to the rare class of E-type asteroids, which had not been directly observed by an interplanetary spacecraft before. Such asteroids are quite small in size and orbit and are mostly found in the inner part of the main asteroid belt located between Mars and Jupiter. They probably originate from the mantle of larger asteroids destroyed in the early history of the Solar System, and are thought to be composed mainly of silicate minerals with little or no iron content. The data collected by Rosetta last night and which will be analysed over the coming days and weeks will finally unveil the true nature of Steins. Through the study of minor bodies such as asteroids, Rosetta is opening up a new window onto the early history of our Solar System. It will give us a better understanding of the origins and evolution of the planets, and also a key to better interpreting asteroid data collected from the ground. Under Rosetta's scope This is not Rosetta's first look at Steins. Over two years ago, in March 2006, the Osiris camera onboard Rosetta observed the brightness variations of this rotating asteroid from a distance of 159 million kilometres (a little over the distance between Earth and the Sun), and was able to determine that the tiny asteroid spins around its axis in about six hours. Together with the two navigation cameras onboard, Osiris was again pointed towards Steins on 4 August and continued to observe the asteroid until 4 September, in order to assist Rosetta's navigation by optical means - a first in the history of ESA spacecraft operations. A few days before the flyby, most of the Rosetta orbiter instruments, as well as the Philae lander magnetometer, were switched on to collect science data on the asteroid, with ever-increasing accuracy as the spacecraft closed in on it. Rosetta's powerful instruments have initially been focusing on the asteroid's orbital motion, rotation, shape and density. As the distance has diminished, the investigation has broadened to take in the observation of surface properties and features, and the analysis of the chemical and mineralogical composition of the terrains, as well as their relative ages and the effects of the solar wind on the surface. At its closest approach, Rosetta flew by Steins at a relative speed of 8.6 km/s. To keep the small asteroid in the field of view of its instruments, the spacecraft had to perform a rapid and highly demanding rotation manoeuvre, which had been successfully rehearsed in March this year. A preliminary analysis of the first data from the flyby was presented to the press at ESOC at 12:00 CEST today. To Steins and beyond "Steins might be small, but we're making big science here", said Dr David Southwood, ESA's Director of Science and Robotic Exploration. "The better we learn to know the different kinds of asteroids, the better we will understand our origins in the past. Moreover, when such Solar System wanderers escape from the belt they could become a threat to Earth. The better we know them, the better we will be able to mitigate the risks some of them might present in the future." "Rosetta performed very well all along," Southwood continued. " This was a complex manoeuvre to keep such a small target in sight, but the spacecraft came through with flying colours. Now we are even more confident in its capacity to conduct the complex tasks that await it at comet Churyumov-Gerasimenko." Science observations of Steins will continue until 10 September. Since its launch by an Ariane 5 rocket on 2 March 2004, Rosetta has already travelled about 3.7 thousand million kilometres and swung by the Earth twice and Mars once for gravity-assist manoeuvres. On 17 December this year Rosetta will reach the maximum distance from the Sun in its current orbit, and will then head back towards Earth for the next and last gravitational kick from our planet on 13 November 2009. This will give the probe its final push toward its cometary target. On its way, Rosetta is scheduled to conduct another flyby, this time with the much larger (21) Lutetia asteroid, on 10 July 2010. Arrival at 67P/Churyumov-Gerasimenko is due by mid-2014. By that time the probe will have covered a distance of about 6.5 thousand million kilometres.

The ROSETTA PHILAE Lander damping mechanism as probe for the Comet soil strength.

NASA Astrophysics Data System (ADS)

Roll, R.

2015-10-01

The ROSETTA Lander is equipped with an one axis damping mechanism to dissipate kinetic energy during the touch down. This damping is necessary to avoid damages to the Lander by a hard landing shock and more important to avoid re-bouncing from ground with high velocity. The damping mechanism works best for perpendicular impact, which means the velocity vector is parallel to the damper axis and all three feet touch the ground at the same time. That is usually not the case. Part of the impact energy can be transferred into rotational energy at ground contact if the impact is not perpendicular. This energy will lift up the Lander from the ground if the harpoons and the hold down thruster fail, as happen in mission. The damping mechanism itself is an electrical generator, driven by a spindle inside a telescopic tube. This tube was extended in mission for landing by 200mm. A maximum damping length of 140mm would be usually required to compensate a landing velocity of 1m/s, if the impact happens perpendicular on hard ground. After landing the potentiometer of the telescopic tube reading shows a total damping length of only 42,5mm. The damping mechanism and the overall mechanical behavior of the Lander at touch down are well tested and characterized and transferred to a multi-body computer model. The incoming and outgoing flightpath of PHILAE allow via computer-simulation the reconstruction of the touch down. It turns out, that the outgoing flight direction is dominated by the local ground slope and that the damping length is strongly dependent on the soil strength. Damping of soft comet ground must be included to fit the damping length measured. Scenario variations of the various feet contact with different local surface features (stone or regolith) and of different soil models finally lead to a restricted range for the soil strength at the touch down area.

Weighted recalibration of the Rosetta pedotransfer model with improved estimates of hydraulic parameter distributions and summary statistics (Rosetta3)

NASA Astrophysics Data System (ADS)

Zhang, Yonggen; Schaap, Marcel G.

2017-04-01

Pedotransfer functions (PTFs) have been widely used to predict soil hydraulic parameters in favor of expensive laboratory or field measurements. Rosetta (Schaap et al., 2001, denoted as Rosetta1) is one of many PTFs and is based on artificial neural network (ANN) analysis coupled with the bootstrap re-sampling method which allows the estimation of van Genuchten water retention parameters (van Genuchten, 1980, abbreviated here as VG), saturated hydraulic conductivity (Ks), and their uncertainties. In this study, we present an improved set of hierarchical pedotransfer functions (Rosetta3) that unify the water retention and Ks submodels into one. Parameter uncertainty of the fit of the VG curve to the original retention data is used in the ANN calibration procedure to reduce bias of parameters predicted by the new PTF. One thousand bootstrap replicas were used to calibrate the new models compared to 60 or 100 in Rosetta1, thus allowing the uni-variate and bi-variate probability distributions of predicted parameters to be quantified in greater detail. We determined the optimal weights for VG parameters and Ks, the optimal number of hidden nodes in ANN, and the number of bootstrap replicas required for statistically stable estimates. Results show that matric potential-dependent bias was reduced significantly while root mean square error (RMSE) for water content were reduced modestly; RMSE for Ks was increased by 0.9% (H3w) to 3.3% (H5w) in the new models on log scale of Ks compared with the Rosetta1 model. It was found that estimated distributions of parameters were mildly non-Gaussian and could instead be described rather well with heavy-tailed α-stable distributions. On the other hand, arithmetic means had only a small estimation bias for most textures when compared with the mean-like "shift" parameter of the α-stable distributions. Arithmetic means and (co-)variances are therefore still recommended as summary statistics of the estimated distributions. However, it may be necessary to parameterize the distributions in different ways if the new estimates are used in stochastic analyses of vadose zone flow and transport. Rosetta1 and Posetta3 were implemented in the python programming language, and the source code as well as additional documentation is available at: http://www.cals.arizona.edu/research/rosettav3.html.

Cumulative sum analysis for experiences of a single-session retrograde intrarenal stone surgery and analysis of predictors for stone-free status.

PubMed

Cho, Sung Yong; Choo, Min Soo; Jung, Jae Hyun; Jeong, Chang Wook; Oh, Sohee; Lee, Seung Bae; Son, Hwancheol; Jeong, Hyeon

2014-01-01

This study investigated the learning curve of a single-session retrograde intrarenal surgery (RIRS) in patients with mid-sized stones. Competence and trainee proficiency for RIRS was assessed using cumulative sum analysis (CUSUM). The study design and the use of patients' information stored in the hospital database were approved by the Institutional Review Board of our institution. A retrospective review was performed for 100 patients who underwent a single-session RIRS. Patients were included if the main stone had a maximal diameter between 10 and 30 mm. The presence of a residual stone was checked on postoperative day 1 and at one-month follow-up visit. Fragmentation efficacy was calculated "removed stone volume (mm(3)) divided by operative time (min)". CUSUM analysis was used for monitoring change in fragmentation efficacy, and we tested whether or not acceptable surgical outcomes were achieved. The mean age was 54.7±14.8 years. Serum creatinine level did not change significantly. Estimated GFR and hemoglobin were within normal limits postoperatively. The CUSUM curve tended to be flat until the 25th case and showed a rising pattern but declined again until the 56th case. After that point, the fragmentation efficacy reached a plateau. The acceptable level of fragmentation efficacy was 25 ml/min. Multivariate logistic regression analyses showed that stone-free rate was significantly lower for cases with multiple stones than those with a single stone (OR = 0.147, CI 0.032 - 0.674, P value  = 0.005) and for cases with higher number of sites (OR = 0.676, CI 0.517 - 0.882, P value  = 0.004). The statistical analysis of RIRS learning experience revealed that 56 cases were required for reaching a plateau in the learning curve. The number of stones and the number of sites were significant predictors for stone-free status.

[Clinical analysis of percutaneous nephrolithotomy for staghorn calculi with different stone branch number].

PubMed

Qi, Shi-yong; Zhang, Zhi-hong; Zhang, Chang-wen; Liu, Ran-lu; Shi, Qi-duo; Xu, Yong

2013-12-01

To investigate the impact of staghorn stone branch number on outcomes of percutaneous nephrolithotomy (PNL). From January 2009 to January 2013, the 371 patients with staghorn stones who were referred to our hospital for PNL were considered for this study. All calculi were showed with CT 3-dimentional reconstruction (3-DR) imaging. The computerized database of the patients had been reviewed. Our exclusion criterion was patients with congenital renal anomalies, such as horse-shoe and ectopic kidneys. And borderline stones that branched to one major calyx only were also not included. From 3-DR images, the number of stone branching into minor renal calices was recorded. We made "3" as the branch breakdown between groups. And the patients were divided into four groups. The number of percutaneous tract, operative time, staged PNL, intra-operative blood loss, complications, stone clearance rate, and postoperative hospital day were compared. The 371 patients (386 renal units) underwent PNL successfully, included 144 single-tract PNL, 242 multi-tract PNL, 97 staged PNL. The average operative time was (100 ± 50) minutes; the average intra-operative blood loss was (83 ± 67) ml. The stone clearance rate were 61.7% (3 days) and 79.5% (3 months). The postoperative hospital stay was (6.9 ± 3.4) days. A significantly higher ratio of multi-tract (χ(2) = 212.220, P < 0.01) and staged PNL (χ(2) = 49.679, P < 0.01), longer operative time (F = 4.652, P < 0.01) and postoperative hospital day (F = 2.067, P = 0.043) and lower rate of stone clearance (χ(2) = 10.691 and 47.369, P < 0.05) were found in PNL for calculi with stone branch number ≥ 5. There was no statistically meaningful difference among the 4 groups based on Clavien complication system (P = 0.460). The possibility of multi-tract and staged PNL, lower rate of stone clearance and longer postoperative hospital day increase for staghorn calculi with stone branch number more than 5.

Patients with Urinary Incontinence Appear More Likely to Develop Upper Urinary Tract Stones: A Nationwide, Population-Based Study with 8-Year Follow-Up

PubMed Central

Chung, Hsiao-Jen; Lin, Alex Tong-Long; Lin, Chih-Chieh; Chen, Tzeng-Ji; Chen, Kuang-Kuo

2016-01-01

This study aimed to investigate associations between primary urinary incontinence and development of upper urinary tract stones in a nationwide population in Taiwan. Data of 1,777 adults with primary urinary incontinence and 26,655 controls (groups A, B, and C) without urinary incontinence at study inception were retrieved from the National Health Insurance System database in Taiwan and were analyzed retrospectively. No enrolled subjects had previous diagnosis of upper urinary tract stones or spinal cord injury. All subjects were followed through end of 2009, with a minimum follow-up of 8 years. A greater percentage of study subjects (334/1777, 18.8%) developed upper urinary tract stones than that of control groups A (865/8885, 9.7%) and B (888/8885, 10%), and C (930/8885, 10.5%) (all p-values < 0.0001). Urinary incontinence was associated with significantly increased risk of developing urinary tract stones (HR 1.99, 95% CI, 1.70–2.34, p < 0.001). Age and metabolic syndrome status were both associated with developing upper urinary tract stones (both p-values < 0.0001). After adjusting for metabolic syndrome, regression analysis showed that urinary incontinence was still associated with a significantly increased risk of developing upper urinary tract stones (HR 1.99, 95% CI = 1.76–2.26, p < 0.0001). Long-term follow-up of Taiwanese patients with primary urinary incontinence suggests that urinary incontinence is associated with a significantly increased risk of developing upper urinary tract stones. Study findings suggest that physicians treating patients with urinary incontinence should give attention to early detection of upper urinary tract stones. PMID:27536881

Patients with Urinary Incontinence Appear More Likely to Develop Upper Urinary Tract Stones: A Nationwide, Population-Based Study with 8-Year Follow-Up.

PubMed

Chung, Hsiao-Jen; Lin, Alex Tong-Long; Lin, Chih-Chieh; Chen, Tzeng-Ji; Chen, Kuang-Kuo

2016-01-01

This study aimed to investigate associations between primary urinary incontinence and development of upper urinary tract stones in a nationwide population in Taiwan. Data of 1,777 adults with primary urinary incontinence and 26,655 controls (groups A, B, and C) without urinary incontinence at study inception were retrieved from the National Health Insurance System database in Taiwan and were analyzed retrospectively. No enrolled subjects had previous diagnosis of upper urinary tract stones or spinal cord injury. All subjects were followed through end of 2009, with a minimum follow-up of 8 years. A greater percentage of study subjects (334/1777, 18.8%) developed upper urinary tract stones than that of control groups A (865/8885, 9.7%) and B (888/8885, 10%), and C (930/8885, 10.5%) (all p-values < 0.0001). Urinary incontinence was associated with significantly increased risk of developing urinary tract stones (HR 1.99, 95% CI, 1.70-2.34, p < 0.001). Age and metabolic syndrome status were both associated with developing upper urinary tract stones (both p-values < 0.0001). After adjusting for metabolic syndrome, regression analysis showed that urinary incontinence was still associated with a significantly increased risk of developing upper urinary tract stones (HR 1.99, 95% CI = 1.76-2.26, p < 0.0001). Long-term follow-up of Taiwanese patients with primary urinary incontinence suggests that urinary incontinence is associated with a significantly increased risk of developing upper urinary tract stones. Study findings suggest that physicians treating patients with urinary incontinence should give attention to early detection of upper urinary tract stones.

Medical management to prevent recurrent nephrolithiasis in adults: a systematic review for an American College of Physicians Clinical Guideline.

PubMed

Fink, Howard A; Wilt, Timothy J; Eidman, Keith E; Garimella, Pranav S; MacDonald, Roderick; Rutks, Indulis R; Brasure, Michelle; Kane, Robert L; Ouellette, Jeannine; Monga, Manoj

2013-04-02

Optimum management to prevent recurrent kidney stones is uncertain. To evaluate the benefits and harms of interventions to prevent recurrent kidney stones. MEDLINE, Cochrane, and other databases through September 2012 and reference lists of systematic reviews and randomized, controlled trials (RCTs). 28 English-language RCTs that studied treatments to prevent recurrent kidney stones and reported stone outcomes. One reviewer extracted data, a second checked accuracy, and 2 independently rated quality and graded strength of evidence. In patients with 1 past calcium stone, low-strength evidence showed that increased fluid intake halved recurrent composite stone risk compared with no treatment (relative risk [RR], 0.45 [95% CI, 0.24 to 0.84]). Low-strength evidence showed that reducing soft-drink consumption decreased recurrent symptomatic stone risk (RR, 0.83 [CI, 0.71 to 0.98]). In patients with multiple past calcium stones, most of whom were receiving increased fluid intake, moderate-strength evidence showed that thiazides (RR, 0.52 [CI, 0.39 to 0.69]), citrates (RR, 0.25 [CI, 0.14 to 0.44]), and allopurinol (RR, 0.59 [CI, 0.42 to 0.84]) each further reduced composite stone recurrence risk compared with placebo or control, although the benefit from allopurinol seemed limited to patients with baseline hyperuricemia or hyperuricosuria. Other baseline biochemistry measures did not allow prediction of treatment efficacy. Low-strength evidence showed that neither citrate nor allopurinol combined with thiazide was superior to thiazide alone. There were few withdrawals among patients with increased fluid intake, many among those with other dietary interventions and more among those who received thiazide and citrate than among control patients. Reporting of adverse events was poor. Most trial participants had idiopathic calcium stones. Nearly all studies reported a composite (including asymptomatic) stone recurrence outcome. In patients with 1 past calcium stone, increased fluid intake reduced recurrence risk. In patients with multiple past calcium stones, addition of thiazide, citrate, or allopurinol further reduced risk. Agency for Healthcare Research and Quality.

Cometary science after Rosetta

PubMed Central

Knight, Matthew M.; Fitzsimmons, Alan

2017-01-01

The European Space Agency’s Rosetta mission ended operations on 30 September 2016 having spent over 2 years in close proximity to its target comet, 67P/Churyumov–Gerasimenko. Shortly before this, in summer 2016, a discussion meeting was held to examine how the results of the mission could be framed in terms of cometary and solar system science in general. This paper provides a brief history of the Rosetta mission, and gives an overview of the meeting and the contents of this associated special issue. This article is part of the themed issue ‘Cometary science after Rosetta’. PMID:28554982

From the Vega mission to comet Halley to the Rosetta mission to comet 67/P Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Zelenyi, L. M.; Ksanfomality, L. V.

2016-12-01

The data acquired by the Vega and Giotto spacecraft, while investigating comet 1P/Halley in 1986, are compared to the results of the first phase of exploration of the nucleus of comet 67P/Churyumov-Gerasimenko performed with the Rosetta and Philae modules. The course of the Rosetta mission activity and the status of the modules after the Philae probe landing on the comet's nucleus are overviewed. Since some elements of the touchdown equipment failed, a number of in-situ experiments on the comet's nucleus were not carried out.

The Rosetta mission orbiter science overview: the comet phase

PubMed Central

Altobelli, N.; Buratti, B. J.; Choukroun, M.

2017-01-01

The international Rosetta mission was launched in 2004 and consists of the orbiter spacecraft Rosetta and the lander Philae. The aim of the mission is to map the comet 67P/Churyumov–Gerasimenko by remote sensing, and to examine its environment in situ and its evolution in the inner Solar System. Rosetta was the first spacecraft to rendezvous with and orbit a comet, accompanying it as it passes through the inner Solar System, and to deploy a lander, Philae, and perform in situ science on the comet's surface. The primary goals of the mission were to: characterize the comet's nucleus; examine the chemical, mineralogical and isotopic composition of volatiles and refractories; examine the physical properties and interrelation of volatiles and refractories in a cometary nucleus; study the development of cometary activity and the processes in the surface layer of the nucleus and in the coma; detail the origin of comets, the relationship between cometary and interstellar material and the implications for the origin of the Solar System; and characterize asteroids 2867 Steins and 21 Lutetia. This paper presents a summary of mission operations and science, focusing on the Rosetta orbiter component of the mission during its comet phase, from early 2014 up to September 2016. This article is part of the themed issue ‘Cometary science after Rosetta’. PMID:28554981

Reduced Fragment Diversity for Alpha and Alpha-Beta Protein Structure Prediction using Rosetta.

PubMed

Abbass, Jad; Nebel, Jean-Christophe

2017-01-01

Protein structure prediction is considered a main challenge in computational biology. The biannual international competition, Critical Assessment of protein Structure Prediction (CASP), has shown in its eleventh experiment that free modelling target predictions are still beyond reliable accuracy, therefore, much effort should be made to improve ab initio methods. Arguably, Rosetta is considered as the most competitive method when it comes to targets with no homologues. Relying on fragments of length 9 and 3 from known structures, Rosetta creates putative structures by assembling candidate fragments. Generally, the structure with the lowest energy score, also known as first model, is chosen to be the "predicted one". A thorough study has been conducted on the role and diversity of 3-mers involved in Rosetta's model "refinement" phase. Usage of the standard number of 3-mers - i.e. 200 - has been shown to degrade alpha and alpha-beta protein conformations initially achieved by assembling 9-mers. Therefore, a new prediction pipeline is proposed for Rosetta where the "refinement" phase is customised according to a target's structural class prediction. Over 8% improvement in terms of first model structure accuracy is reported for alpha and alpha-beta classes when decreasing the number of 3- mers. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Safety and feasibility of day case ureteroscopy and laser lithotripsy (URSL) in patients with a solitary kidney.

PubMed

Ghosh, Anngona; Somani, Bhaskar K

2016-01-01

The management of nephrolithiasis in patients with a solitary kidney poses a treatment challenge. The study aimed to evaluate the outcomes of ureteroscopy and laser stone fragmentation (URSL) for renal stones in these patients treated in our university teaching hospital. Between July 2012 and December 2014, seventeen cases of URSL for stones in a solitary kidney were reviewed. Patient demographics, stone dimensions, perioperative and post-operative outcomes were recorded in a prospectively maintained database. Serum creatinine levels pre-procedure and at follow-up were also compared. Seventeen cases of URSL were conducted with a mean age of 52.9 ±19.9 years. 8 of the 17 (47%) patients had stones in multiple locations and 13 (76%) were in the lower pole. The mean ± SD stone size and BMI were 13.0 ±8.9 mm and 31.6 ±5.8 kg/m(2), respectively. The stone free rate (SFR) was 82.5%. Fourteen (82.5%) patients were discharged the same day and 16 cases (94%) were discharged within 24 hours. For patients with deranged pre-operative serum creatinine, the mean serum creatinine level improved from 131.2 ±68.3 µmol/L pre-URSL to 106.5 ±36.7 µmol/L at follow-up. There was one Clavien grade II complication with a patient requiring additional antibiotics for post-operative urinary tract infection. There were no other major or minor complications. Day case ureteroscopy for stone disease in a solitary kidney is safe and feasible with a low complication rate and an overall improvement in renal function.

The Rosetta Science Archive: Status and Plans for Enhancing the Archive Content

NASA Astrophysics Data System (ADS)

Heather, David; Barthelemy, Maud; Besse, Sebastien; Fraga, Diego; Grotheer, Emmanuel; O'Rourke, Laurence; Taylor, Matthew; Vallat, Claire

2017-04-01

On 30 September 2016, Rosetta completed its incredible mission by landing on the surface of Comet 67P/Churyumov-Gerasimenko. Although this marked an end to the spacecraft's active operations, intensive work is still ongoing with instrument teams preparing their final science data deliveries for ingestion into ESA's Planetary Science Archive (PSA). In addition, ESA is establishing contracts with some instrument teams to enhance their data and documentation in an effort to provide the best long-term archive possible for the Rosetta mission. Currently, the majority of teams have delivered all of their data from the nominal mission (end of 2015), and are working on their remaining increments from the 1-year mission extension. The aim is to complete the nominal archiving with data from the complete mission by the end of this year, when a full mission archive review will be held. This review will assess the complete data holdings from Rosetta and ensure that the archive is ready for the long-term. With the resources from the operational mission coming to an end, ESA has established a number of 'enhanced archiving' contracts to ensure that the best possible data are delivered to the archive before instrument teams disband. Updates are focused on key aspects of an instrument's calibration or the production of higher level data / information, and are therefore specific to each instrument's needs. These contracts are currently being kicked off, and will run for various lengths depending upon the activities to be undertaken. The full 'archive enhancement' process will run until September 2019, when the post operations activities for Rosetta will end. Within these contracts, most instrument teams will work on providing a Science User Guide for their data, as well as updating calibrations. Several teams will also be delivering higher level and derived products. For example, the VIRTIS team will be updating both their spectral and geometrical calibrations, and will aim to deliver mapping products to the final archive. Similarly, the OSIRIS team will be improving their calibrations and delivering data additionally in FITS format. The Rosetta Plasma Consortium (RPC) instruments will complete cross-calibrations and a number of activities individual to each instrument. The MIDAS team will also be working on cross-calibrations and will produce a dust particle catalog from the comet coma. GIADA will be producing dust environment maps, with products in 3D plus time. A contract also exists to produce and deliver data set(s) containing sup-porting ground-based observations from amateur astronomers. In addition to these contracts, the Rosetta ESA archiving team will produce calibrated data sets for the NAVCAM instrument, and will work to include the latest shape models from the comet into the final Rosetta archive. Work is also underway to provide a centralized solution to the problem of geometry on the comet. This presentation will outline the current status of the Rosetta archive, as well as highlighting some of the 'enhanced archiving' activities planned with the various instrument teams on Rosetta.

Rosetta Comet Spreads its Jets

NASA Image and Video Library

2014-10-24

This image was taken by the Optical, Spectroscopic, and Infrared Remote Imaging System, Rosetta main onboard scientific imaging system, on Sept. 10, 2014. Jets of cometary activity can be seen along almost the entire body of the comet. http://photojournal.jpl.nasa.gov/catalog/PIA18886

Risk of kidney stones with surgical intervention in living kidney donors.

PubMed

Thomas, S M; Lam, N N; Welk, B K; Nguan, C; Huang, A; Nash, D M; Prasad, G V R; Knoll, G A; Koval, J J; Lentine, K L; Kim, S J; Lok, C E; Garg, A X

2013-11-01

A kidney stone in a person with a solitary kidney requires urgent attention, which may result in surgical and/or hospital attention. We conducted a matched retrospective cohort study to determine if living kidney donors compared to healthy nondonors have a higher risk of: (i) kidney stones with surgical intervention, and (ii) hospital encounters for kidney stones. We reviewed all predonation charts for living kidney donations from 1992 to 2009 at five major transplant centers in Ontario, Canada, and linked this information to healthcare databases. We selected nondonors from the healthiest segment of the general population and matched 10 nondonors to every donor. Of the 2019 donors and 20 190 nondonors, none had evidence of kidney stones prior to cohort entry. Median follow-up time was 8.4 years (maximum 19.7 years; loss to follow-up <7%). There was no difference in the rate of kidney stones with surgical intervention in donors compared to nondonors (8.3 vs. 9.7 events/10 000 person-years; rate ratio 0.85; 95% confidence interval [CI] 0.47-1.53). Similarly there was no difference in the rate of hospital encounters for kidney stones (12.1 vs. 16.1 events/10 000 person-years; rate ratio 0.75; 95% CI 0.45-1.24). These interim results are reassuring for the safety of living kidney donation. © Copyright 2013 The American Society of Transplantation and the American Society of Transplant Surgeons.

Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27.

PubMed

Kilambi, Krishna Praneeth; Pacella, Michael S; Xu, Jianqing; Labonte, Jason W; Porter, Justin R; Muthu, Pravin; Drew, Kevin; Kuroda, Daisuke; Schueler-Furman, Ora; Bonneau, Richard; Gray, Jeffrey J

2013-12-01

Rounds 20-27 of the Critical Assessment of PRotein Interactions (CAPRI) provided a testing platform for computational methods designed to address a wide range of challenges. The diverse targets drove the creation of and new combinations of computational tools. In this study, RosettaDock and other novel Rosetta protocols were used to successfully predict four of the 10 blind targets. For example, for DNase domain of Colicin E2-Im2 immunity protein, RosettaDock and RosettaLigand were used to predict the positions of water molecules at the interface, recovering 46% of the native water-mediated contacts. For α-repeat Rep4-Rep2 and g-type lysozyme-PliG inhibitor complexes, homology models were built and standard and pH-sensitive docking algorithms were used to generate structures with interface RMSD values of 3.3 Å and 2.0 Å, respectively. A novel flexible sugar-protein docking protocol was also developed and used for structure prediction of the BT4661-heparin-like saccharide complex, recovering 71% of the native contacts. Challenges remain in the generation of accurate homology models for protein mutants and sampling during global docking. On proteins designed to bind influenza hemagglutinin, only about half of the mutations were identified that affect binding (T55: 54%; T56: 48%). The prediction of the structure of the xylanase complex involving homology modeling and multidomain docking pushed the limits of global conformational sampling and did not result in any successful prediction. The diversity of problems at hand requires computational algorithms to be versatile; the recent additions to the Rosetta suite expand the capabilities to encompass more biologically realistic docking problems. Copyright © 2013 Wiley Periodicals, Inc.

Rosetta Orbiter and Lander: Our Evolving Understanding of Comet Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Alexander, Claudia

2015-08-01

Rosetta is the third cornerstone mission of the European Space Agency's (ESA) comprehensive Horizon 2000 Programme. It was designed to find, and examine, some of the original material of the solar system; to help us understand how the comet works as a machine to absorb and re-radiate energy from the sun; to characterize the thermophysical properties and structure of the body, and to complete an inventory of its dusty, organic, and isotopic composition. At the time of the conference, Rosetta will be at perihelion, portions of the surface that were initially in sunlight will be in complete darkness, and portions initially only partially exposed to the sun will be experiencing summer. At the time of the conference, a planned pass into a comet plume may have yielded important measurements. Up-to-date logistics of Rosetta exploration will be discussed.Rosetta has already provided a rich mother-lode of data on this intriguing object, from the early measurements of D/H ratio, to the first-time measurement of N2 in a small body, to the unique ‘dragon-egg’ morphology seen in selected places on the surface. In this talk, I'll review some of the principle results so far of the Rosetta mission, including what we know of comet activity, the showers of grains, and developing magnetic field induced cometospheric boundaries and coma environment. I'll review the landing and walk through the 60 hours of time the probe spent on the comet's surface. Finally I'll discuss some of the intriguing questions that might be answered with the perihelion pass, such as does the observed increase in this comet’s rotation period indicate a sign of comet inflation or disruption?

Rosetta Langmuir Probe Photoelectron Emission and Solar Ultraviolet Flux at Comet 67P

NASA Astrophysics Data System (ADS)

Johansson, F. L.; Odelstad, E.; Paulsson, J. J.; Harang, S. S.; Eriksson, A. I.; Mannel, T.; Vigren, E.; Edberg, N. J. T.; Miloch, W. J.; Simon Wedlund, C.; Thiemann, E.; Epavier, F.; Andersson, L.

2017-12-01

The Langmuir Probe instrument on Rosetta monitored the photoelectron emission current of the probes during the Rosetta mission at comet 67P/Churyumov-Gerasimenko, in essence acting as a photodiode monitoring the solar ultraviolet radiation at wavelengths below 250 nm. We have used three methods of extracting the photoelectron saturation current from the Langmuir probe measurements. The resulting dataset can be used as an index of the solar far and extreme ultraviolet at the Rosetta spacecraft position, including flares, in wavelengths that are important for photoionisation of the cometary neutral gas. Comparing the photoemission current to data measurements by MAVEN/EUVM and TIMED/SEE, we find good correlation when 67P was at large heliocentric distances early and late in the mission, but up to 50 percent decrease of the expected photoelectron current at perihelion. We discuss possible reasons for the photoemission decrease, including scattering and absorption by nanograins created by disintegration of cometary dust far away from the nucleus.

Rosetta photoelectron emission and solar ultraviolet flux at comet 67P

NASA Astrophysics Data System (ADS)

Johansson, Fredrik L.; Odelstad, E.; Paulsson, J. J. P.; Harang, S. S.; Eriksson, A. I.; Mannel, T.; Vigren, E.; Edberg, N. J. T.; Miloch, W. J.; Simon Wedlund, C.; Thiemann, E.; Eparvier, F.; Andersson, L.

2017-07-01

The Langmuir Probe instrument on Rosetta monitored the photoelectron emission current of the probes during the Rosetta mission at comet 67P/Churyumov-Gerasimenko, in essence acting as a photodiode monitoring the solar ultraviolet radiation at wavelengths below 250 nm. We have used three methods of extracting the photoelectron saturation current from the Langmuir probe measurements. The resulting data set can be used as an index of the solar far and extreme ultraviolet at the Rosetta spacecraft position, including flares, in wavelengths which are important for photoionization of the cometary neutral gas. Comparing the photoemission current to data measurements by MAVEN/EUVM and TIMED/SEE, we find good correlation when 67P was at large heliocentric distances early and late in the mission, but up to 50 per cent decrease of the expected photoelectron current at perihelion. We discuss possible reasons for the photoemission decrease, including scattering and absorption by nanograins created by disintegration of cometary dust far away from the nucleus.

The influence of maternal and paternal history on stone composition and clinical course of calcium nephrolithiasis in subjects aged between 15 and 25.

PubMed

Guerra, Angela; Ticinesi, Andrea; Allegri, Franca; Nouvenne, Antonio; Pinelli, Silvana; Folesani, Giuseppina; Lauretani, Fulvio; Maggio, Marcello; Borghi, Loris; Meschi, Tiziana

2016-11-01

Our aim was to compare the influence of maternal history of stones (MHS) and paternal history of stones (PHS) on composition of calculi and disease course in a group of patients with calcium nephrolithiasis (CN) aged between 15 and 25, the age range with the maximal influence of family history on disease expression. One-hundred thirty-five patients (68 F) with CN and one stone-forming parent were retrospectively selected from the database of our outpatient stone clinic, and categorized according to MHS or PHS. Data about stone disease course and composition of passed calculi, determined by chemical analysis or Fourier-transformed infrared spectrophotometry, were collected together with information on blood chemistry and 24-h urinary profile of lithogenic risk. The characteristics of disease course and stone composition were compared using logistic regression tests adjusted for age, sex, and BMI or analysis of covariance where appropriate. Patients with MHS (n = 46) had significantly higher urinary calcium/creatinine ratio and ammonium, a higher prevalence of urological treatments (57 vs 27 %, p < 0.001) and mixed calcium oxalate/calcium phosphate stone composition (69 vs 35 %, p = 0.002) than those with PHS. At multivariate logistic regression models, MHS was independently associated with urological treatments (OR 4.5, 95 %CI 1.9-10.7, p < 0.001) and the formation of calculi with mixed calcium oxalate/calcium phosphate composition (OR 5.8, 95 %CI 1.9-17.9, p = 0.002). The method of stone analysis did not affect this result. In conclusion, in subjects aged 15-25, MHS is associated with mixed calcium stones and with a higher risk for urological procedures, and should be, therefore, considered in the management of urolithiasis.

Laboratory Gas Dynamic Measurements of the Comet Pressure Sensor COPS on the Rosetta Spacecraft

NASA Astrophysics Data System (ADS)

Tzou, Chia-Yu; Altwegg, Kathrin; Gasc, Sébastien; Rubin, Martin

2014-05-01

Rosetta is part of the cornerstone missions executed by the European Space Agency (ESA). It is the first space mission to orbit and also land on a comet. By the end of July 2014 Rosetta will be able to carry out a close study of comet 67P/Churyumov-Gerasimenko. The Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) is one of the core payloads on board of the Rosetta spacecraft [Balsiger et al, 2007]. ROSINA's main objective is to determine the major atmospheric and ionospheric composition in the coma and to investigate the gas dynamics around the comet. ROSINA consists of two mass spectrometers and a pressure sensor. The Comet Pressure Sensor (COPS) is not only a pressure sensor but also plays the role of a safety instrument for Rosetta by providing high-density alerts to the other payload instruments. It includes two gauges: the "nude gauge" measures total neutral density in the coma and the "ram gauge" measures the dynamic pressure of the cometary gas flux to obtain the bulk velocity of the neutral gas. The combination of these two gauges makes COPS capable to derive the gas dynamics in the coma. We recently performed laboratory gas dynamic measurements with the identical flight-spare instrument of COPS. Using the Calibration System for The Mass Spectrometer Instrument ROSINA (CASYMIR) we produce neutral gas beams to model cometary gas jets with velocities from thermal to 2 km/s. For COPS calibration we measure gas beams with different incident angles to derive the velocity and the temperature of the gas using different mixtures expected at the comet. We demonstrate that COPS will be ready for the prime mission and it will be fascinating to compare COPS measurements with numerous observation results and computer models starting in summer 2014 to gain new insights into the gas dynamics around a comet. Reference: Balsiger, H. et al.: ROSINA-Rosetta Orbiter Spectrometer for Ion and Neutral Analysis, Space Science Reviews, Vol. 128, 745-801, 2007.

Personifying space: how the public learned to care for Rosetta and Philae

NASA Astrophysics Data System (ADS)

Mignone, Claudia; Baldwin, Emily; O'Flaherty, Karen; Homfeld, Anne-Mareike; Bauer, Markus; McCaughrean, Mark

2015-04-01

One of the aspects in the communications campaign promoted by the European Space Agency (ESA) and its partner institutions throughout 2014 to raise awareness about the comet-chasing mission, Rosetta, was the development of two anthropomorphic characters depicting the Rosetta probe and the lander Philae. The two characters were featured in a series of short cartoons with a fairy-tale flair that were distributed on the internet with the aim of breaking into new audience groups. The cartoon series, named "Once upon a time", tells the adventures of Rosetta and Philae, depicted as two bold and friendly explorers on a pioneering journey across the Solar System. The episodes cover the mission milestones, from Rosetta's wake-up from deep-space hibernation to its rendezvous with the comet and Philae's landing. They were promoted through the mission's dedicated social media accounts (mainly Twitter and Facebook) and through ESA's existing social media channels as part of the broader Rosetta communications campaign. We discuss how visual storytelling was used to make the mission's scientific goals more accessible, allowing the audience to share both its excitement and risks. We describe the development of the cartoon series and the level of engagement it generated, using estimates based on the response received through our social media channels. Other tools were also used to help the public identify with the two space probes. In particular, the Twitter accounts @ESA_Rosetta (managed by ESA) and @philae2014 (managed by DLR) were run in first person, as to give the impression that the probes were writing the tweets themselves, and even interacting with one another - as is often done in the case of spacecraft Twitter accounts. All these elements added a personal feel to the comet landing, with members of the public empathising with the two space probes and caring for their well-being. This wave of interest culminated in the last few hours of Philae's operations on the comet, before it entered hibernation. We also discuss issues that we encountered using this approach, including pitfalls and lessons learnt, and how the choice of anthropomorphising spacecraft was received by different publics.

Ureteroscopy and laser stone fragmentation (URSL) for large (≥1 cm) paediatric stones: Outcomes from a university teaching hospital.

PubMed

Featherstone, N C; Somani, B K; Griffin, S J

2017-04-01

The treatment of large renal stones (≥1 cm) in paediatric patients is challenging. The usual treatment options include percutaneous nephrolithotomy (PCNL) or shockwave lithotripsy (SWL). There is a rise in the use of ureteroscopy and laser stone fragmentation (URSL) for paediatric stones; however, outcomes of treatment for large renal stones in this age group are still largely unknown. To investigate the outcome of URSL for large paediatric renal stones ≥1 cm treated at the present institution over the last 5 years. A retrospective review was performed of outcomes from the prospectively maintained stone database. Only paediatric patients undergoing ureteroscopic (rigid or flexible ureteroscopy (URS)) procedures for stones ≥1 cm were included. Patient demographics, operative details, stone burden, hospital stay, complications and stone clearance were recorded and analysed. From April 2010 to June 2015, 18 paediatric patients with a mean age of 10.4 years (range 3.6-15) underwent 35 ureteroscopic procedures for large stones (≥1 cm). The stone location was in the kidney (n = 14), ureter (n = 1), and in both the kidney and ureter for the remaining three patients. Nine patients had multiple stones. There was a preceding history of PCNL in four patients, with one patient having URS combined with a PCNL. The mean follow-up was 2.7 years (range 0-5). A postoperative stent was inserted in 21 (60%) patients. The overall stone-free rate (SFR) was 89% for a mean of 1.8 procedures per patient (range 1-4) - see Summary Table below. There was an inability to access stone within a lower pole calyx in one patient, despite maximum deflection of the ureteroscope. No intra- or post-operative complications were noted, and mean hospital stay was 1.1 days (range 0-5). Published papers in adult literature have shown that ureteroscopy and laser fragmentation (URSL) is a viable alternative to PCNL. Newer equipment and improved techniques have resulted in SFRs being comparable with PCNL. A recent systematic review reported an SFR of 91% for large adult stones (>2 cm) for a mean 1.45 procedures per patient, and an overall complication rate of 8.6%. The present study has also demonstrated excellent outcomes in the use of ureteroscopy and laser fragmentation for the management of large paediatric stones with no complications. The results show that paediatric URSL for large stones achieves a good SFR with minimal morbidity and is a good treatment option in established endourological units. Copyright © 2016. Published by Elsevier Ltd.

Evolution of Cometary Activity at 67P/Churyumov-Gerasimenko as seen by ROSINA/Rosetta

NASA Astrophysics Data System (ADS)

Jäckel, A.; Altwegg, K.; Balsiger, H.; Calmonte, U.; Gasc, S.; Le Roy, L.; Rubin, M.; Tzou, C. Y.; Wurz, P.; Bieler, A.; Berthelier, J.-J.; Fiethe, B.; Hässig, M.; deKeyser, J.; Mall, U.; Rème, H.

2015-10-01

Since nine months the European Space Agency's spacecraft Rosetta, with the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) onboard, is in the comet escort phase. ROSINA is a suite of three instruments, consisting of the COmetary Pressure Sensor (COPS), the Double Focusing Mass Spectrometer (DFMS), and the Reflectron-type Time-Of-Flight (RTOF) mass spectrometer [1]. The two mass spectrometers measure in situ the neutral and ionized volatile material in the coma of comet 67P/Churyumov- Gerasimenko (67P/C-G). With COPS we are able to derive the total gas density, bulk velocities and temperatures of the coma.

The Wide Angle Camera of the ROSETTA Mission

NASA Astrophysics Data System (ADS)

Barbieri, C.; Fornasier, S.; Verani, S.; Bertini, I.; Lazzarin, M.; Rampazzi, F.; Cremonese, G.; Ragazzoni, R.; Marzari, F.; Angrilli, F.; Bianchini, G. A.; Debei, S.; Dececco, M.; Guizzo, G.; Parzianello, G.; Ramous, P.; Saggin, B.; Zaccariotto, M.; Da Deppo, V.; Naletto, G.; Nicolosi, G.; Pelizzo, M. G.; Tondello, G.; Brunello, P.; Peron, F.

This paper aims to give a brief description of the Wide Angle Camera (WAC), built by the Centro Servizi e AttivitàSpaziali (CISAS) of the University of Padova for the ESA ROSETTA Mission to comet 46P/Wirtanen and asteroids 4979 Otawara and 140 Siwa. The WAC is part of the OSIRIS imaging system, which comprises also a Narrow Angle Camera (NAC) built by the Laboratoire d'Astrophysique Spatiale (LAS) of Marseille. CISAS had also the responsibility to build the shutter and the front cover mechanism for the NAC. The flight model of the WAC was delivered in December 2001, and has been already integrated on ROSETTA.

"Hello, World!" Harnessing Social Media for the Rosetta Mission

NASA Astrophysics Data System (ADS)

Baldwin, E.; Mignone, C.; Scuka, D.; Homfeld, A. M.; Ranero, K.; Rolfe, E.; Bennett, M.; Schepers, A.; O'Flaherty, K. S.; Bauer, M.; McCaughrean, M.

2016-03-01

The European Space Agency's comet-chasing Rosetta mission was launched in 2004, before social media became a popular tool for mainstream communication. As it reached its destination ten years later, new audiences were reached and inspired by this once-in-a-lifetime event by harnessing a range of outlets for communicating the key messages. These included traditional online platforms, such as news websites, blogs, and Livestream, as well as Twitter, Facebook, Instagram, Flickr, YouTube, Google+ and SoundCloud. In this article, we outline the role social media channels played in making Rosetta one of the European Space Agency's biggest communication and public engagement successes.

Taste CREp: the Cosmic-Ray Exposure program

NASA Astrophysics Data System (ADS)

Martin, Léo; Blard, Pierre-Henri; Balco, Greg; Lavé, Jérôme; Delunel, Romain; Lifton, Nathaniel

2017-04-01

We present here the CREp program and the ICE-D production rate database, an online system to compute Cosmic Ray Exposure (CRE) ages with cosmogenic 3He and 10Be (crep.crpg.cnrs-nancy.fr). The CREp calculator is designed to automatically reflect the current state of the global calibration database production rate stored in ICE-D (http://calibration.ice-d.org). ICE-D will be regularly updated in order to incorporate new calibration data and reflect the current state of the available literature. The CREp program permits to calculate ages in a flexible way: 1) Two scaling models are available, i.e. i) the empirical Lal-Stone time-dependent model (Balco et al., 2008; Lal, 1991; Stone, 2000) with the muon parameters of Braucher et al. (2011), and ii) the Lifton-Sato-Dunai (LSD) theoretical model (Lifton et al., 2014). 2) Users may also test the impact of the atmosphere model, using either i) the ERA-40 database (Uppala et al., 2005), or ii) the standard atmosphere (N.O.A.A., 1976). 3) For the time-dependent correction, users or choose among the three proposed geomagnetic datasets (Lifton, 2016; Lifton et al., 2014; Muscheler et al., 2005) or import their own database. 4) For the important choice of the production rate, CREp is linked to a database of production rate calibration data, ICE-D. This database includes published empirical calibration rate studies that are publicly available at present, including those of the CRONUS-Earth and CRONUS-EU projects, as well as studies from other projects. Users may select the production rates either: i) using a worldwide mean value, ii) a regionally averaged value (not available in regions with no data), iii) a local unique value, which can be chosen among the existing dataset or imported by the user, or iv) any combination of single or multiple calibration data. We tested the efficacy of the different scaling models by looking at the statistical dispersion of the computed Sea Level High Latitude (SLHL) calibrated production rates. Lal/Stone and LSD models have comparable efficacies, and the impact of the tested atmospheric model and the geomagnetic database is also limited. If a global mean is chosen, the 1σ uncertainty arising from the production rate is about 5% for 10Be and 10% for 3He. If a regional production rate is picked, these uncertainties are potentially lower.

Ureteral Avulsion Associated with Ureteroscopy: Insights from the MAUDE Database.

PubMed

Tanimoto, Ryuta; Cleary, Ryan C; Bagley, Demetrius H; Hubosky, Scott G

2016-03-01

Flexible and semirigid ureteroscopy (URS) are widely performed for the treatment of upper tract calculi and tumors. Ureteral avulsion is a rare, but devastating complication of endoscopic stone removal having multiple possible etiologies. Awareness and avoidance of this rare complication depend on identifying responsible mechanisms. This study examines the situations in which ureteral avulsion occurs as described anonymously in the Manufacturer and User facility Device Experience (MAUDE) database. The MAUDE database was systematically reviewed to account for all reported complications of flexible and semirigid URS. Keywords "ureteroscopy, injury, death, malfunction and other" were entered in the database and medical device reports were reviewed to capture any cases resulting in ureteral avulsion. Attention was paid to the type of ureteroscope involved and the mechanism for avulsion. A total of 104 entries were found detailing the reported complications of flexible and semirigid URS. Ureteral avulsion was clearly noted in six reports with flexible (2) and semirigid ureteroscopes (4). Potential mechanisms included locked deflection of a flexible ureteroscope (1), bunching of the distal bending rubber in a flexible ureteroscope (1), scabbard avulsion (3), and stone basketing (1). Although the incidence of ureteral avulsion cannot truly be determined from this study, some potentially novel mechanisms for this rare complication are observed. This may target future educational efforts to maximize awareness and avoidance of this complication.

First Results from The PACA_Rosetta67P Group in Support of ESA/Rosetta Mission

NASA Astrophysics Data System (ADS)

Yanamandra-Fisher, Padma A.

2016-10-01

The PACA_Rosetta67P Facebook group is the amateur observing program, complementary to the ground-based professional observations, in support of ESA/Rosetta mission to the comet 67P/Churyumovs-Gerasimenko (CG). The amateur campaign has followed the ESA/Rosetta's escort of 67P from August 2014 to present. Although 67P/CG is faint in its current apparition (it is a Jupiter Family comet, with a period of 6.45 years and is on its seventh passage of the inner solar system), the comet is known to brighten from about a month before perihelion and post perihelion. The comet behaved as expected. With the vast amount of data collected by the global amateur network, we are now able to (i) archive the data to allow it to be crowdsourced by the professionals; (ii) mine the data to determine various trends such as the variation of magnitude with respect to heliospheric distance; map the changes in Afrho (the dust activity parameter) and a long baseline of observations that show features similar to the features seen in the ground-based observations of the professionals. We will highlight the campaign and the results now possible to determine and compare with other observations taken at the same time. We will highlight the first results of the campaign, with the challenges and lessons learned to apply when developing other amateur observing programs.

Safety and feasibility of day case ureteroscopy and laser lithotripsy (URSL) in patients with a solitary kidney

PubMed Central

Ghosh, Anngona

2016-01-01

Introduction The management of nephrolithiasis in patients with a solitary kidney poses a treatment challenge. The study aimed to evaluate the outcomes of ureteroscopy and laser stone fragmentation (URSL) for renal stones in these patients treated in our university teaching hospital. Material and methods Between July 2012 and December 2014, seventeen cases of URSL for stones in a solitary kidney were reviewed. Patient demographics, stone dimensions, perioperative and post-operative outcomes were recorded in a prospectively maintained database. Serum creatinine levels pre-procedure and at follow-up were also compared. Results Seventeen cases of URSL were conducted with a mean age of 52.9 ±19.9 years. 8 of the 17 (47%) patients had stones in multiple locations and 13 (76%) were in the lower pole. The mean ± SD stone size and BMI were 13.0 ±8.9 mm and 31.6 ±5.8 kg/m2, respectively. The stone free rate (SFR) was 82.5%. Fourteen (82.5%) patients were discharged the same day and 16 cases (94%) were discharged within 24 hours. For patients with deranged pre-operative serum creatinine, the mean serum creatinine level improved from 131.2 ±68.3 µmol/L pre-URSL to 106.5 ±36.7 µmol/L at follow-up. There was one Clavien grade II complication with a patient requiring additional antibiotics for post-operative urinary tract infection. There were no other major or minor complications. Conclusions Day case ureteroscopy for stone disease in a solitary kidney is safe and feasible with a low complication rate and an overall improvement in renal function. PMID:27123333

Rationale and Design of the Registry for Stones of the Kidney and Ureter (ReSKU): A Prospective Observational Registry to Study the Natural History of Urolithiasis Patients.

PubMed

Chang, Helena C; Tzou, David T; Usawachintachit, Manint; Duty, Brian D; Hsi, Ryan S; Harper, Jonathan D; Sorensen, Mathew D; Stoller, Marshall L; Sur, Roger L; Chi, Thomas

2016-12-01

Registry-based clinical research in nephrolithiasis is critical to advancing quality in urinary stone disease management and ultimately reducing stone recurrence. A need exists to develop Health Insurance Portability and Accountability Act (HIPAA)-compliant registries that comprise integrated electronic health record (EHR) data using prospectively defined variables. An EHR-based standardized patient database-the Registry for Stones of the Kidney and Ureter (ReSKU™)-was developed, and herein we describe our implementation outcomes. Interviews with academic and community endourologists in the United States, Canada, China, and Japan identified demographic, intraoperative, and perioperative variables to populate our registry. Variables were incorporated into a HIPAA-compliant Research Electronic Data Capture database linked to text prompts and registration data within the Epic EHR platform. Specific data collection instruments supporting New patient, Surgery, Postoperative, and Follow-up clinical encounters were created within Epic to facilitate automated data extraction into ReSKU. The number of variables within each instrument includes the following: New patient-60, Surgery-80, Postoperative-64, and Follow-up-64. With manual data entry, the mean times to complete each of the clinic-based instruments were (minutes) as follows: New patient-12.06 ± 2.30, Postoperative-7.18 ± 1.02, and Follow-up-8.10 ± 0.58. These times were significantly reduced with the use of ReSKU structured clinic note templates to the following: New patient-4.09 ± 1.73, Postoperative-1.41 ± 0.41, and Follow-up-0.79 ± 0.38. With automated data extraction from Epic, manual entry is obviated. ReSKU is a longitudinal prospective nephrolithiasis registry that integrates EHR data, lowering the barriers to performing high quality clinical research and quality outcome assessments in urinary stone disease.

Evaluating the importance of mean stone density and skin-to-stone distance in predicting successful shock wave lithotripsy of renal and ureteric calculi.

PubMed

Wiesenthal, Joshua D; Ghiculete, Daniela; D'A Honey, R John; Pace, Kenneth T

2010-08-01

Shock wave lithotripsy (SWL) is considered the first line treatment for the majority of patients with renal and ureteric calculi, with success rates from contemporary series varying from 60 to 90%. Success is dependent on many patient and stone-related factors. We conducted a retrospective analysis of mean stone CT density (MSD) and skin-to-stone distance (SSD) to determine their influence on the success of SWL of renal and ureteric calculi. Data from all patients treated at the St. Michael's Hospital Lithotripsy Unit from May 2004 to June 2009 were reviewed. Analysis was restricted to those patients with a pre-treatment non-contrast CT scan conducted at our center demonstrating a solitary renal or ureteric calculus < or =20 mm in maximal diameter. Successful treatment of renal stones was defined as those patients who were stone free or had asymptomatic, clinically insignificant residual fragments < or =4 mm in diameter, as measured by KUB X-ray, 3 months after a single SWL treatment. Successful treatment of ureteric stones was defined as being stone free on KUB X-ray, 2-weeks post-SWL. Demographic, stone, patient, treatment and follow-up data were collected from a prospective database and review of CT and KUB imaging by two independent urologists and one radiologist. Data were analyzed with logistic regression, Chi square analysis and ANOVA where appropriate. 422 patients (69.7% male) with a mean age of 51.4 years (SD 12.9) and mean BMI 27.0 kg/m(2) (SD 4.9) were analyzed. Mean stone size was 78.9 mm(2) (SD 77.3) for ureteral stones and 66.1 mm(2) (SD 63.2) for renal stones, with 95 (43.6%) of the renal stones located in the lower pole. The single-treatment success rates for ureteral and renal stones were 62.3% and 68.8%, respectively. On univariate analysis, predictors of SWL success, regardless of stone location, were age (p = 0.01), BMI (p = 0.01), stone size (p < 0.01), MSD (p < 0.01) and SSD (p < 0.01). On multivariate analysis, MSD >900 HU (OR = 0.49, CI: 0.32-0.75) and SSD >110 mm (OR = 0.49, CI: 0.31-0.78) were both significant predictors of outcome. We have identified in a large series of renal and ureteric calculi that both MSD and SSD can reliably predict SWL outcomes. This data can be used in combination with other patient and stone-related factors to facilitate optimal treatment-based decisions and provide patients with more accurate single-treatment success rates for SWL.

Petition to Object to the Carmeuse Lime and Stone Plant, Manitowoc, Wisconsin, Operating Permit

EPA Pesticide Factsheets

This document may be of assistance in applying the Title V air operating permit regulations. This document is part of the Title V Petition Database available at www2.epa.gov/title-v-operating-permits/title-v-petition-database. Some documents in the database are a scanned or retyped version of a paper photocopy of the original. Although we have taken considerable effort to quality assure the documents, some may contain typographical errors. Contact the office that issued the document if you need a copy of the original.

Rosetta performs ESA's closest-ever Earth fly-by

NASA Astrophysics Data System (ADS)

2005-03-01

The passage through the Earth-Moon system allowed ground controllers to test Rosetta's 'asteroid fly-by mode' (AFM) using the Moon as a 'fake' asteroid, rehearsing the fly-bys of asteroids Steins and Lutetia due in 2008 and 2010 respectively. The AFM test started at 23:01 GMT and ran for nine minutes during which the two onboard navigation cameras successfully tracked the Moon, allowing Rosetta's attitude to be automatically adjusted. Before and after closest approach, the navigation cameras also acquired a series of images of the Moon and Earth; these data will be downloaded early today for ground processing and are expected to be available by 8 March. In addition, other onboard instruments were switched on, including ALICE (ultraviolet imaging spectrometer), VIRTIS (visible and infrared mapping spectrometer) and MIRO (microwave instrument for the Rosetta orbiter), for calibration and general testing using the Earth and Moon as targets. The fly-by manoeuvre swung the three-tonne spacecraft around our planet and out towards Mars, where it will make a fly-by on 26 February 2007. Rosetta will return to Earth again in a series of four planet fly-bys (three times with Earth, once with Mars) before reaching Comet 67P/Churyumov-Gerasimenko in 2014, when it will enter orbit and deliver a lander, Philae, onto the surface. The fly-bys are necessary to accelerate the spacecraft so as to eventually match the velocity of the target comet. They are a fuel-saving way to boost speed using planetary gravity. Yesterday's fly-by came one year and two days after launch and highlights the valuable opportunities for instrument calibration and data gathering available during the mission's multi-year voyage. In just three months, on 4 July, Rosetta will be in a good position to observe and gather data during NASA's spectacular Deep Impact event, when the Deep Impact probe will hurl a 380 kg projectile into Comet Tempel 1, revealing data on the comet's internal structure. Certain of Rosetta’s unique instruments, such as its ultraviolet light instrument ALICE, should be able to make critical contributions to the American mission. About Rosetta Rosetta is the first mission designed to both orbit and land on a comet, and consists of an orbiter and a lander. The spacecraft carries 11 scientific experiments and will be the first mission to undertake long-term exploration of a comet at close quarters. After entering orbit around Comet 67P/Churyumov-Gerasimenko in 2014, the spacecraft will release a small lander onto the icy nucleus. Rosetta will orbit the comet for about a year as it heads towards the Sun, remaining in orbit for another half-year past perihelion (closest approach to the Sun). Comets hold essential information about the origin of our Solar System because they are the most primitive objects in the Solar System and their chemical composition has changed little since their formation. By orbiting and landing on Comet 67P/Churyumov-Gerasimenko, Rosetta will help us reconstruct the history of our own neighbourhood in space. Note for broadcasters: The ESA TV Service will transmit a TV exchange with images of the fly-by, together with science results/images from observations as far as available on 11 March. For further details : http://television.esa.int

Cross-Link Guided Molecular Modeling with ROSETTA

PubMed Central

Leitner, Alexander; Rosenberger, George; Aebersold, Ruedi; Malmström, Lars

2013-01-01

Chemical cross-links identified by mass spectrometry generate distance restraints that reveal low-resolution structural information on proteins and protein complexes. The technology to reliably generate such data has become mature and robust enough to shift the focus to the question of how these distance restraints can be best integrated into molecular modeling calculations. Here, we introduce three workflows for incorporating distance restraints generated by chemical cross-linking and mass spectrometry into ROSETTA protocols for comparative and de novo modeling and protein-protein docking. We demonstrate that the cross-link validation and visualization software Xwalk facilitates successful cross-link data integration. Besides the protocols we introduce XLdb, a database of chemical cross-links from 14 different publications with 506 intra-protein and 62 inter-protein cross-links, where each cross-link can be mapped on an experimental structure from the Protein Data Bank. Finally, we demonstrate on a protein-protein docking reference data set the impact of virtual cross-links on protein docking calculations and show that an inter-protein cross-link can reduce on average the RMSD of a docking prediction by 5.0 Å. The methods and results presented here provide guidelines for the effective integration of chemical cross-link data in molecular modeling calculations and should advance the structural analysis of particularly large and transient protein complexes via hybrid structural biology methods. PMID:24069194

Study of the coma of comet 67P/Churyumov-Gerasimenko based on the ROSINA/RTOF instrument onboard Rosetta

NASA Astrophysics Data System (ADS)

Hoang, M.; Garnier, P.; Rème, H.; Altwegg, K.; Balsiger, H.; Calmonte, U.; Fiethe, B.; Galli, A.; Gasc, S.; Jäckel, A.; Mall, U.; Le Roy, L.; Rubin, M.; Tzou, C.-Y.; Waite, J. H.; Wurz, P.

2015-10-01

The Rosetta ESA mission investigates the environment of the comet 67P / Churyumov- Gerasimenko since August 2014. Among the experiments onboard the satellite, the ROSINA experiment (Rosetta Orbiter Spectrometer for Ion and Neutral Analysis) includes two mass spectrometers (DFMS and RTOF) to analyze the composition of neutrals and ions, and an instrument (COPS) to monitor the density and velocity of neutrals in the coma [1]. We will here analyze and discuss the data of the ROSINA/RTOF instrument during the comet escort phase. A detailed description of the main volatiles (H2O, CO2, CO) dynamics and of the heterogeneities of the coma will be provided.

Rosetta mission status: challenges of flying near a comet

NASA Astrophysics Data System (ADS)

Martin, P.; Taylor, M.; Kueppers, M.; O'Rourke, L.; Lodiot, S.

2015-10-01

Recent operational events, most likely due to the increased presence of dust near the spacecraft during close flybys of C67P/Churyumov-Gerasimenko in the comet escort phase, have led to a redefinition of the Rosetta mission through the design of new trajectories allowing the spacecraft and its payload to continue flying safely around the comet while augmenting the wealth of scientific data and results that has characterized the beginning of the mission so far. A decision process is being put in place in view of finding the best ways forward operationally so as to recover some capabilities that will allow Rosetta to continue optimising its scientific mission, in both the nominal and expected extended mission intervals.

The dust environment of 67P/Churyumov-Gerasimenko as seen through Rosetta/OSIRIS

NASA Astrophysics Data System (ADS)

Tubiana, C.; Güttler, C.; Sierks, H.; Bertini, I.; Osiris Team

2017-09-01

The ESA's Rosetta spacecraft had the unique opportunity to be in the vicinity of comet 67P/Churyumov-Gerasimenko for 2.5 years, observing how the comet evolved while approaching the Sun, passing through perihelion and then moving back into the outer solar system. OSIRIS, the scientific camera system onboard Rosetta, imaged the nucleus and the comet dust environment during the entire mission. We studied the unresolved dust coma, investigating its diurnal and seasonal variations and providing insights into the dust composition. Hundreds of individual particles, identified in the thousands of images dedicated to dust studies, have been characterized in terms of color, size distribution, distance, light curves and orbits.

The efficacy and safety of adrenergic alpha-antagonists in treatment of distal ureteral stones in pediatric patients: A systematic review and meta-analysis.

PubMed

Tian, Daxue; Li, Nan; Huang, Wei; Zong, Huantao; Zhang, Yong

2017-02-01

We carried out a systematic review and meta-analysis to evaluate the efficacy and safety of adrenergic alpha-antagonists as a medical expulsive therapy for ureteral stones in pediatric patients. The PubMed, EMBASE and Cochrane Controlled Trials Register databases were searched up to January 2016. All randomized controlled trials and all cohort studies in which patients were randomized to receive either adrenergic alpha-antagonists or placebo for ureteral stones were identified. The outcome measures assessed were overall stone expulsion rate (primary), expulsion time (secondary), and treatment-emergent adverse events. Five trials with a total of 406 pediatric patients met the inclusion criteria. According to the doses of adrenergic alpha-antagonists, the pooling effects of adrenergic alpha-antagonists were analyzed, with a higher expulsion rate obtained than in controls, the stone expulsion rate (OR=2.70, 95% CI 1.49 to 4.91, P=0.001). Adrenergic alpha-antagonists statistically did not significantly decrease the number of the stone expulsion time with the placebo, the stone expulsion time (SMD=-4.65, 95% CI -9.76 to 0.45, P=0.07). Safety assessments included common treatment-emergent adverse events (TEAEs) (OR=2.01, 95% CI 0.74 to 5.48, P=0.17). Compared with placebos, there was a higher stone expulsion rate with the adrenergic alpha-antagonists; in addition, fewer adverse effects were observed. This meta-analysis may suggest that adrenergic alpha-antagonists are a safe and effective medical expulsive therapy choice for ureteral stones in pediatric patients. As the level of classification of evidence-based medicine, the level of evidence of our article is Ia. But it remains to need a large-scale multicenter randomized controlled study to be further confirmed. The level of evidence of our study is V. Copyright © 2017 Elsevier Inc. All rights reserved.

The Hunger Stones: a new source for more objective identification of historical droughts

NASA Astrophysics Data System (ADS)

Elleder, Libor

2016-04-01

Extreme droughts recorded recently more frequently in different parts of the world represent the most serious environmental problem. Our contribution identifies periods of hydrological drought. The extreme drought period in summer 2015 enabled the levelling of historical watermarks on the „Hunger Stone" (Hungerstein) in the Elbe in Czech town of Děčín. The comparison of the obtained levels of earlier palaeographic records with systematic measurements in the Děčín profile confirmed the hypothesis that the old watermarks represent the minimal water levels. Moreover, we present a review of so far known Hunger Stones in the Elbe River with their low-level watermarks. For identification of the drought period duration we used the oldest water level records from the Czech Hydrometeorological Institute (CHMI) database archive: Magdeburg (since 1727), Dresden (since 1801), Prague (since 1825) and Decin (since 1851) time-series. We obtained more objective and complex information on all historical droughts between 1727 and 2015. The low water-marks on Hunger Stones give us a possibility for augmentation of systematic records and extended our knowledge's back to 1616. The Hunger Stones in the Elbe River with old watermarks are unique testimony for studying of hydrological extremes, and last but not least also of anthropogenic changes in the riverbed of the Elbe.

"Rosetta" Mission's "7 Hours of Terror" and "Philae's" Descent

ERIC Educational Resources Information Center

Blanco, Philip

2015-01-01

In November 2014 the "Rosetta" mission to Comet 67P/Churyumov-Gerasimenko made the headlines when its "Philae" lander completed a successful unpowered descent onto the surface of the comet nucleus after "7 hours of terror" for the mission scientists. 67P's irregular shape and rotation made this task even more…

Cometary Plasma Probed by Rosetta

NASA Astrophysics Data System (ADS)

Galand, Marina; Vigren, Erik; Raghuram, Susarla; Schwartz, Steve; Eriksson, Anders; Edberg, Niklas; Lebreton, Jean-Pierre; Henri, Pierre; Burch, Jim; Fuselier, Stephen; Haessig, Myrtha; Mandt, Kathy; Altwegg, Kathrin; Tzou, Chia-You

2015-04-01

In Fall 2014, comet 67P/Churyumov-Gerasimenko, the main target of the Rosetta mission, was at 3 AU from the Sun. Its outgassing rate was only of the order of 5×1025 s-1 based on Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) / Cometary Pressure Sensor (COPS). Despite such a thin coma, a plasma of cometary origin has been detected by Rosetta Plasma Consortium (RPC) sensors and ROSINA/ Double Focusing Mass Spectrometer (DFMS). Close to the comet they have revealed the presence of a cometary ionosphere, with a hot electron population, consistent with the deposition of Extreme UltraViolet (EUV) solar radiation. We will present a comparison between RPC sensors and an energy deposition model in terms of suprathermal electron intensities [RPC/ Ion and Electron Sensor (IES)] and electron temperature and density [RPC/ LAngmuir Probe (LAP) and RPC/ Mutual Impedance Probe (MIP)]. We will also compare ion composition among the main species, between our ionospheric model and ROSINA/DFMS. We will discuss effects of the space environment on the cometary plasma. Finally, we will highlight any evolution in the cometary plasma as the comet is getting closer to perihelion.

Modeling an in-register, parallel "iowa" aβ fibril structure using solid-state NMR data from labeled samples with rosetta.

PubMed

Sgourakis, Nikolaos G; Yau, Wai-Ming; Qiang, Wei

2015-01-06

Determining the structures of amyloid fibrils is an important first step toward understanding the molecular basis of neurodegenerative diseases. For β-amyloid (Aβ) fibrils, conventional solid-state NMR structure determination using uniform labeling is limited by extensive peak overlap. We describe the characterization of a distinct structural polymorph of Aβ using solid-state NMR, transmission electron microscopy (TEM), and Rosetta model building. First, the overall fibril arrangement is established using mass-per-length measurements from TEM. Then, the fibril backbone arrangement, stacking registry, and "steric zipper" core interactions are determined using a number of solid-state NMR techniques on sparsely (13)C-labeled samples. Finally, we perform Rosetta structure calculations with an explicitly symmetric representation of the system. We demonstrate the power of the hybrid Rosetta/NMR approach by modeling the in-register, parallel "Iowa" mutant (D23N) at high resolution (1.2Å backbone rmsd). The final models are validated using an independent set of NMR experiments that confirm key features. Copyright © 2015 Elsevier Ltd. All rights reserved.

Holistic Approach to Partial Covalent Interactions in Protein Structure Prediction and Design with Rosetta.

PubMed

Combs, Steven A; Mueller, Benjamin K; Meiler, Jens

2018-05-29

Partial covalent interactions (PCIs) in proteins, which include hydrogen bonds, salt bridges, cation-π, and π-π interactions, contribute to thermodynamic stability and facilitate interactions with other biomolecules. Several score functions have been developed within the Rosetta protein modeling framework that identify and evaluate these PCIs through analyzing the geometry between participating atoms. However, we hypothesize that PCIs can be unified through a simplified electron orbital representation. To test this hypothesis, we have introduced orbital based chemical descriptors for PCIs into Rosetta, called the PCI score function. Optimal geometries for the PCIs are derived from a statistical analysis of high-quality protein structures obtained from the Protein Data Bank (PDB), and the relative orientation of electron deficient hydrogen atoms and electron-rich lone pair or π orbitals are evaluated. We demonstrate that nativelike geometries of hydrogen bonds, salt bridges, cation-π, and π-π interactions are recapitulated during minimization of protein conformation. The packing density of tested protein structures increased from the standard score function from 0.62 to 0.64, closer to the native value of 0.70. Overall, rotamer recovery improved when using the PCI score function (75%) as compared to the standard Rosetta score function (74%). The PCI score function represents an improvement over the standard Rosetta score function for protein model scoring; in addition, it provides a platform for future directions in the analysis of small molecule to protein interactions, which depend on partial covalent interactions.

On the Evolution of the Pulmonary Alveolar Lipofibroblast

PubMed Central

Torday, John S.; Rehan, Virender K.

2015-01-01

The pulmonary alveolar lipofibroblast was first reported in 1970. Since then its development, structure, function and molecular characteristics have been determined. Its capacity to actively absorb, store and ‘traffic’ neutral lipid for protection of the alveolus against oxidant injury, and for the active supply of substrate for lung surfactant phospholipid production have offered the opportunity to identify a number of specialized functions of these strategically placed cells. Namely, Parathyroid Hormone-related Protein (PTHrP) signaling, expression of Adipocyte Differentiation Related Protein, leptin, peroxisome proliferator activator receptor gamma, and the prostaglandin E2 receptor EP2-which are all stretch-regulated, explaining how and why surfactant production is ‘on-demand’ in service to ventilation-perfusion matching. Because of the central role of the lipofibroblast in vertebrate lung physiologic evolution, it is a Rosetta Stone for understanding how and why the lung evolved in adaptation to terrestrial life, beginning with the duplication of the PTHrP Receptor some 300 mya. Moreover, such detailed knowledge of the workings of the lipofibroblast have provided insight to the etiology and effective treatment of Bronchopulmonary Dysplasia based on physiologic principles rather than on pharmacology. PMID:26706109

Spatial memory: a Rosetta stone for rat and human hippocampal discourse: Theoretical comment on Goodrich-Hunsaker and Hopkins (2010).

PubMed

Sutherland, Robert J

2010-06-01

The article by Goodrich-Hunsaker and Hopkins (2010, this issue) takes up an important place among in the recent contributions on the role of the hippocampus in memory. They evaluate the effect of bilateral damage to the hippocampus on performance by human participants in a virtual 8-arm radial maze. The hippocampal damage appears to be highly selective and nearly complete. Exactly as with selective hippocampal damage in rats, the human participants showed a deficit in accurately choosing rewarded versus never-rewarded arms and a deficit in avoiding reentering recently visited arms. The results are triply significant: (1) They provide good support for the idea that the wealth of neurobiological information, from network to synapse to gene, on spatial memory in the rat may apply as a whole to the human hippocampal memory system; (2) They affirm the utility of human virtual task models of rat spatial memory tasks; (3) They support one interpretation of the dampening of the hippocampal functional MRI (fMRI) blood oxygen level-dependent (BOLD) signal during performance of the virtual radial arm maze observed by Astur et al. (2005).

Watching AGN feedback at its birth: HST observations of nascent outflow host IC860

NASA Astrophysics Data System (ADS)

Alatalo, Katherine

2016-10-01

IC860 is a nearby IR-luminous early-type spiral with a unique set of properties: it is a shocked, poststarburst galaxy that hosts an AGN-driven neutral wind and a compact core of molecular gas. IC860 can serve as a rosetta stone for the early stages of triggering AGN feedback. We propose to use WFC3 on HST to obtain NUV, optical and near-IR imaging of IC860. We will create a spatially-resolved history of star formation quenching through SED-fitting of 7 requested broadband filters, and compare the spatially resolved star formation histories to in different positions within the underlying stellar features (such as spiral structure) that might define a narrative of how star formation is quenching in IC860. These observations will also resolve the super-star cluster sites to trace the most recent star formation. Finally, these observations will trace the mass of the outflow by building an absorption map of the dust. IC860 presents a unique opportunity to study a galaxy at an early stage of transitioning from blue spiral to red early-type galaxy, that also hosts an AGN-driven neutral wind and a compact, turbulent molecular gas core.

In Situ Space Gas Dynamic Measurements by the ROSINA Comet Pressure Sensor COPS on the Rosetta Spacecraft

NASA Astrophysics Data System (ADS)

Tzou, C. Y.; Altwegg, K.; Fiethe, B.; Gasc, S.; Rubin, M.

2014-12-01

Rosetta is part of the cornerstone missions executed by the European Space Agency. It is the first space mission to orbit and also land on a comet. Starting in August 2014 Rosetta will be able to carry out a close study of comet 67P/Churyumov-Gerasimenko. The Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) is one of the core payloads on board of the Rosetta spacecraft [Balsiger et al, 2007]. ROSINA's main objective is to determine the major atmospheric and ionospheric composition in the coma and to investigate the gas dynamics around the comet. ROSINA consists of two mass spectrometers and a pressure sensor. The Comet Pressure Sensor (COPS) includes two gauges: the "nude gauge" measures total neutral density in the coma and the "ram gauge" measures the dynamic pressure of the cometary gas flux to obtain the bulk velocity of the neutral gas. The combination of these two gauges makes COPS capable to derive the gas dynamics at the location of the spacecraft. We performed laboratory gas dynamic measurements with the identical flight-spare instrument of COPS. Using the Calibration System for The Mass Spectrometer Instrument ROSINA (CASYMIR) we produce neutral gas beams to model cometary gas jets with velocities from thermal up to 2 km/s. We expect that COPS will be able to detect the faint and expanding atmosphere of comet 67P/Churyumov-Gerasimenko as early as August 2014 when the comet is still farther than 3 AU from the Sun. We will present the first ROSINA COPS observations of the gas dynamics around the comet together with the corresponding laboratory measurements required for the interpretation of these data. Reference: Balsiger, H. et al.: ROSINA-Rosetta Orbiter Spectrometer for Ion and Neutral Analysis, Space Science Reviews, Vol. 128, 745-801, 2007.

Surgical outcomes of percutaneous nephrolithotomy in 3402 patients and results of stone analysis in 1559 patients.

PubMed

Rizvi, Syed Adibul Hasan; Hussain, Manzoor; Askari, Syed Hassan; Hashmi, Altaf; Lal, Murli; Zafar, Mirza Naqi

2017-11-01

To report our experience of a series of percutaneous nephrolithotomy (PCNL) procedures in a single centre over 18 years in terms of patient and stone characteristics, indications, stone clearance and complications, along with the results of chemical analysis of stones in a subgroup. We retrospectively analysed the outcomes of PCNL in 3402 patients, who underwent the procedure between 1997 and 2014, obtained from a prospectively maintained database. Data analysis included patients' age and sex, laboratory investigations, imaging, punctured calyx, duration of operation, volume of irrigation fluid, radiation exposure time, blood transfusion, complications and stone-free status at 1-month follow-up. For the present analysis, outcomes in relation to complications and success were divided in two eras, 1997-2005 and 2006-2014, to study the differences. Of the 3402 patients, 2501 (73.5%) were male and 901 (26.5%) were female, giving a male:female ratio of 2.8:1. Staghorn (partial or complete) calculi were found in 27.5% of patients, while 72.5% had non-staghorn calculi. Intracorporeal energy sources used for stone fragmentation included ultrasonography in 917 patients (26.9%), pneumatic lithoclast in 1820 (53.5%), holmium laser in 141 (4.1%) and Lithoclast ® master in 524 (15.4%). In the majority of patients (97.4%) a 18-22-F nephrostomy tube was placed after the procedure, while 69 patients (2.03%) underwent tubeless PCNL. The volume of the irrigation fluid used ranged from 7 to 37 L, with a mean of 28.4 L. The stone-free rate after PCNL in the first era studied was 78%, vs 83.2% in the second era, as assessed by combination of ultrasonography and plain abdominal film of the kidney, ureter and bladder. The complication rate in the first era was 21.3% as compared with 10.3% in the second era, and this difference was statistically significant. Stone analysis showed pure stones in 41% and mixed stones in 58% of patients. The majority of stones consisted of calcium oxalate. This is the largest series of PCNL reported from any single centre in Pakistan, where there is a high prevalence of stone disease associated with infective and obstructive complications, including renal failure. PCNL as a treatment method offers an economic and effective option in the management of renal stone disease with acceptable stone clearance rates in a resource-constrained healthcare system. © 2017 The Authors BJU International © 2017 BJU International Published by John Wiley & Sons Ltd.

The incidence of urolithiasis among commercial aviation pilots.

PubMed

Hyams, Elias S; Nelms, David; Silberman, Warren S; Feng, Zhaoyong; Matlaga, Brian R

2011-09-01

A kidney stone event in a commercial aviation pilot has significant vocational implications since the Federal Aviation Administration specifically prohibits medical certification in the setting of recent or recurrent stone disease. Given these serious concerns, an understanding of the burden of stone disease on the commercial aviation community is important. Thus, we performed a study in partnership with the Federal Aviation Administration to better characterize the epidemiology of this condition. We reviewed the Federal Aviation Administration Aerospace Medical Certification database for 2000 through 2007. Pilots with a class I certificate (scheduled commercial aviation) were selected for further review. All medical certificates submitted with a pathology code of 573 (urolithiasis) were identified for analysis. From 2000 through 2007 between 3.7% and 4.6% of scheduled commercial aviation pilots were diagnosed with urolithiasis. However, during the study period there was a significant decrease in the proportion of pilots diagnosed with urolithiasis. A meaningful number of commercial aviation pilots are affected by urolithiasis each year. Our analysis detected a significant decrease in the proportion of affected pilots, although the reason for this trend is not well understood. It may be that changes in the occupational environment that could affect risk factors for stone formation are responsible. Further efforts to characterize stone risk in this unique population are welcome, given the larger vocational and societal consequences of a stone event in the setting of airline transport. Copyright © 2011 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Percutaneous treatment of calculi in reconstructed bladder.

PubMed

Paez, Edgar; Reay, Emma; Murthy, L N S; Pickard, Robert S; Thomas, David J

2007-03-01

To report our results with percutaneous removal of calculi from reconstructed bladders. Twelve patients with reconstructed bladders who underwent endoscopic cystolithotomy were identified from our departmental database, and retrospective review of case notes and imaging was performed. Access was gained via an ultrasound-guided new tract in 9 patients (75%). An old suprapubic tract site was used in two patients, and the Mitrofanoff stoma was the route of access in one patient. The procedure was successful, with stone clearance achieved in all 12 cases. No major complications were observed. At a median follow up of 24 months, stone recurrence was observed in 5 patients (42%), 4 of whom underwent repeat procedures. Follow-up showed no change in continence in the patient with a Mitroffanoff stoma. Percutaneous cystolithotomy is a safe and effective minimally invasive option for removal of stones in a reconstructed bladder. We recommend endoscopic removal as the treatment of choice in these patients.

Self-Fluid Management in Prevention of Kidney Stones: A PRISMA-Compliant Systematic Review and Dose-Response Meta-Analysis of Observational Studies.

PubMed

Xu, Chang; Zhang, Chao; Wang, Xiao-Long; Liu, Tong-Zu; Zeng, Xian-Tao; Li, Shen; Duan, Xiao-Wen

2015-07-01

Epidemiologic studies have suggested that daily fluid intake that achieves at least 2.5 L of urine output per day is protective against kidney stones. However, the precise quantitative nature of the association between fluid intake and kidney stone risk, as well as the effect of specific types of fluids on such risk, are not entirely clear.We conducted a systematic review and dose-response meta-analysis to quantitatively assess the association between fluid intake and kidney stone risk. Based on a literature search of the PubMed, Embase, and Cochrane Library databases, 15 relevant studies (10 cohort and 5 case-control studies) were selected for inclusion in the meta-analysis with 9601 cases and 351,081 total participants.In the dose-response meta-analysis, we found that each 500 mL increase in water intake was associated with a significantly reduced risk of kidney stone formation (relative risk (RR) = 0.93; 95% CI: 0.87, 0.98; P < 0.01). Protective associations were also found for an increasing intake of tea (RR = 0.96; 95% CI: 0.93, 0.99; P = 0.02) and alcohol (RR = 0.80, 95% CI: 0.75, 0.85; P < 0.01). A borderline reverse association were observed on coffee intake and risk of kidney stone (RR = 0.88; 95% CI: 0.76, 1.00; P = 0.05). The risk of kidney stones was not significantly related to intake of juice (RR = 1.02, 95% CI: 0.95, 1.10; P = 0.64), soda (RR = 1.03; 95% CI: 0.90, 1.17; P = 0.65), or milk (RR = 0.96; 95% CI: 0.88, 1.03; P = 0.21). Subgroup analysis and sensitivity analyses showed inconsistent results on coffee, alcohol, and milk intake.Increased water intake is associated with a reduced risk of kidney stones; increased consumption of tea and alcohol may reduce kidney stone risk. An average daily water intake was recommended for kidney stone prevention.

Self-Fluid Management in Prevention of Kidney Stones: A PRISMA-Compliant Systematic Review and Dose–Response Meta-Analysis of Observational Studies

PubMed Central

Xu, Chang; Zhang, Chao; Wang, Xiao-Long; Liu, Tong-Zu; Zeng, Xian-Tao; Li, Shen; Duan, Xiao-Wen

2015-01-01

Abstract Epidemiologic studies have suggested that daily fluid intake that achieves at least 2.5 L of urine output per day is protective against kidney stones. However, the precise quantitative nature of the association between fluid intake and kidney stone risk, as well as the effect of specific types of fluids on such risk, are not entirely clear. We conducted a systematic review and dose–response meta-analysis to quantitatively assess the association between fluid intake and kidney stone risk. Based on a literature search of the PubMed, Embase, and Cochrane Library databases, 15 relevant studies (10 cohort and 5 case–control studies) were selected for inclusion in the meta-analysis with 9601 cases and 351,081 total participants. In the dose–response meta-analysis, we found that each 500 mL increase in water intake was associated with a significantly reduced risk of kidney stone formation (relative risk (RR) = 0.93; 95% CI: 0.87, 0.98; P < 0.01). Protective associations were also found for an increasing intake of tea (RR = 0.96; 95% CI: 0.93, 0.99; P = 0.02) and alcohol (RR = 0.80, 95% CI: 0.75, 0.85; P < 0.01). A borderline reverse association were observed on coffee intake and risk of kidney stone (RR = 0.88; 95% CI: 0.76, 1.00; P = 0.05). The risk of kidney stones was not significantly related to intake of juice (RR = 1.02, 95% CI: 0.95, 1.10; P = 0.64), soda (RR = 1.03; 95% CI: 0.90, 1.17; P = 0.65), or milk (RR = 0.96; 95% CI: 0.88, 1.03; P = 0.21). Subgroup analysis and sensitivity analyses showed inconsistent results on coffee, alcohol, and milk intake. Increased water intake is associated with a reduced risk of kidney stones; increased consumption of tea and alcohol may reduce kidney stone risk. An average daily water intake was recommended for kidney stone prevention. PMID:26166074

Rosetta/OSIRIS - Nucleus morphology and activity of comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Sierks, Holger; Barbieri, Cesare; Lamy, Philippe; Rickman, Hans; Rodrigo, Rafael; Koschny, Detlef

2015-04-01

ESA's Rosetta mission arrived on August 6, 2014, at target comet 67P/Churyumov-Gerasimenko after 10 years of cruise. OSIRIS (Optical, Spectroscopic, and Infrared Remote Imaging System) is the scientific imaging system onboard Rosetta. It comprises a Narrow Angle Camera (NAC) for nucleus surface and dust studies and a Wide Angle Camera (WAC) for the wide field coma investigations. OSIRIS imaged the nucleus and coma of the comet from the arrival throughout the mapping phase, PHILAE landing, early escort phase and close fly-by. The overview paper will discuss the surface morpholo-gy and activity of the nucleus as seen in gas, dust, and local jets as well as small scale structures in the local topography.

On-line database of voltammetric data of immobilized particles for identifying pigments and minerals in archaeometry, conservation and restoration (ELCHER database).

PubMed

Doménech-Carbó, Antonio; Doménech-Carbó, María Teresa; Valle-Algarra, Francisco Manuel; Gimeno-Adelantado, José Vicente; Osete-Cortina, Laura; Bosch-Reig, Francisco

2016-07-13

A web-based database of voltammograms is presented for characterizing artists' pigments and corrosion products of ceramic, stone and metal objects by means of the voltammetry of immobilized particles methodology. Description of the website and the database is provided. Voltammograms are, in most cases, accompanied by scanning electron microphotographs, X-ray spectra, infrared spectra acquired in attenuated total reflectance Fourier transform infrared spectroscopy mode (ATR-FTIR) and diffuse reflectance spectra in the UV-Vis-region. For illustrating the usefulness of the database two case studies involving identification of pigments and a case study describing deterioration of an archaeological metallic object are presented. Copyright © 2016 Elsevier B.V. All rights reserved.

CNA’s Integrated Ship Database, Fourth Quarter 2011 Update

DTIC Science & Technology

2012-09-01

CNA’s Integrated Ship Database Fourth Quarter 2011 Update Gregory N. Suess, Lynette A . McClain, and Rhea Stone CNA Interactive Software DIS-2012-U...194) during a replenishment at sea (RAS).” Navy.mil Official Website of the United States Navy, last accessed May 24, 2012, at http://www.navy.mil...that notwithstanding any other provision of law, no person shall be subject to any penalty for failing to comply with a collection of information if

Order Responding to January 13, 2010 Request that the Administrator Object to Operating Permit for Carmeuse Lime and Stone Plant in Manitowoc, WI

EPA Pesticide Factsheets

This document may be of assistance in applying the Title V air operating permit regulations. This document is part of the Title V Petition Database available at www2.epa.gov/title-v-operating-permits/title-v-petition-database. Some documents in the database are a scanned or retyped version of a paper photocopy of the original. Although we have taken considerable effort to quality assure the documents, some may contain typographical errors. Contact the office that issued the document if you need a copy of the original.

Demography and biochemistry of 2800 patients from a renal stones clinic.

PubMed

Walker, Valerie; Stansbridge, Elizabeth M; Griffin, Damian G

2013-03-01

Because the causes of stones are uncertain, interventions to prevent recurrence have an insecure foundation. Progress depends on careful evaluation of stone formers. A descriptive retrospective database study of 1983 men and 816 women from the Southampton stones clinic from 1990 to March 2007. Anonymized data from the first attendance were analysed using non-parametric statistical tests. Sex ratio (2.43:1), age (median 49 y, 2.5th-97.5th percentiles, 23-77 y men, 20-79 y women), recurrent stone formers (30%) and type of stone were similar to other centres. Women more often had a positive family history (24% versus 19% men), previous urinary infection (31% versus 5%) and structural urinary tract abnormality (14% versus 7%); more men had gout (5% versus 1%) and bladder outlet obstruction (3% versus <1%). Calcium, oxalate and uric acid excretion were increased in 43%, 17% and 22% respectively of men and 31%, 7% and 10% of women. Urinary calcium, oxalate and uric acid correlated significantly, r ranging from 0.149 to 0.311 for 24 h excretion and 0.510 to 0.695 for concentrations per litre. Twenty-two percent of men and 8% of women with normal parathyroid hormone had phosphaturia (excretion of phosphate corrected for glomerular filtration rate (TmPO4/GFR) < 0.70 mmol/L); 6% men and 1.6% women also had low plasma phosphate. Many variables correlated significantly but often weakly with age. Creatinine clearance, pH and (men) TmPO4/GFR decreased from 50 y, urine creatinine, calcium and citrate from 60 y. Risk factors for stones differ between men and women, change with ageing and in some may have a genetic basis. The role of phosphaturia merits further exploration.

Screening and Management of Asymptomatic Renal Stones in Astronauts

NASA Technical Reports Server (NTRS)

Reyes, David; Locke, James; Sargsyan, Ashot; Garcia, Kathleen

2017-01-01

Management guidelines were created to screen and manage asymptomatic renal stones in U.S. astronauts. The true risk for renal stone formation in astronauts due to the space flight environment is unknown. Proper management of this condition is crucial to mitigate health and mission risks. The NASA Flight Medicine Clinic electronic medical record and the Lifetime Surveillance of Astronaut Health databases were reviewed. An extensive review of the literature and current aeromedical standards for the monitoring and management of renal stones was also done. This work was used to develop a screening and management protocol for renal stones in astronauts that is relevant to the spaceflight operational environment. In the proposed guidelines all astronauts receive a yearly screening and post-flight renal ultrasound using a novel ultrasound protocol. The ultrasound protocol uses a combination of factors, including: size, position, shadow, twinkle and dispersion properties to confirm the presence of a renal calcification. For mission-assigned astronauts, any positive ultrasound study is followed by a low-dose renal computed tomography scan and urologic consult. Other specific guidelines were also created. A small asymptomatic renal stone within the renal collecting system may become symptomatic at any time, and therefore affect launch and flight schedules, or cause incapacitation during a mission. Astronauts in need of definitive care can be evacuated from the International Space Station, but for deep space missions evacuation is impossible. The new screening and management algorithm has been implemented and the initial round of screening ultrasounds is under way. Data from these exams will better define the incidence of renal stones in U.S. astronauts, and will be used to inform risk mitigation for both short and long duration spaceflights.

Critical assessment of human metabolic pathway databases: a stepping stone for future integration

PubMed Central

2011-01-01

Background Multiple pathway databases are available that describe the human metabolic network and have proven their usefulness in many applications, ranging from the analysis and interpretation of high-throughput data to their use as a reference repository. However, so far the various human metabolic networks described by these databases have not been systematically compared and contrasted, nor has the extent to which they differ been quantified. For a researcher using these databases for particular analyses of human metabolism, it is crucial to know the extent of the differences in content and their underlying causes. Moreover, the outcomes of such a comparison are important for ongoing integration efforts. Results We compared the genes, EC numbers and reactions of five frequently used human metabolic pathway databases. The overlap is surprisingly low, especially on reaction level, where the databases agree on 3% of the 6968 reactions they have combined. Even for the well-established tricarboxylic acid cycle the databases agree on only 5 out of the 30 reactions in total. We identified the main causes for the lack of overlap. Importantly, the databases are partly complementary. Other explanations include the number of steps a conversion is described in and the number of possible alternative substrates listed. Missing metabolite identifiers and ambiguous names for metabolites also affect the comparison. Conclusions Our results show that each of the five networks compared provides us with a valuable piece of the puzzle of the complete reconstruction of the human metabolic network. To enable integration of the networks, next to a need for standardizing the metabolite names and identifiers, the conceptual differences between the databases should be resolved. Considerable manual intervention is required to reach the ultimate goal of a unified and biologically accurate model for studying the systems biology of human metabolism. Our comparison provides a stepping stone for such an endeavor. PMID:21999653

Rosetta - a new target to solve planetary mysteries

NASA Astrophysics Data System (ADS)

2004-01-01

This delay meant that the original mission's target, Comet Wirtanen, could no longer be reached. Instead, a new target has been selected, Comet 67P/Churyumov-Gerasimenko, which Rosetta will encounter in 2014 after a ‘billiard ball’ journey through the Solar System lasting more than ten years. Rosetta’s name comes from the famous ‘Rosetta Stone’, from which Egyptian hieroglyphics were deciphered almost 200 years ago. In a similar way, scientists hope that the Rosetta spacecraft will unlock the mysteries of the Solar System. Comets are very interesting objects for scientists, since their composition reflects how the Solar System was when it was very young and still 'unfinished', more than 4600 million years ago. Comets have not changed much since then. In orbiting Comet Churyumov-Gerasimenko and landing on it, Rosetta will collect information essential to an understanding of the origin and evolution of our Solar System. It will also help discover whether comets contributed to the beginnings of life on Earth. In fact comets are carriers of complex organic molecules that, delivered to Earth through impacts, perhaps played a role in the origin of living forms. Furthermore, ‘volatile’ light elements carried by comets might also have played an important role in forming the Earth’s oceans and atmosphere. “Rosetta is one of the most challenging missions undertaken so far,” says Professor David Southwood, ESA Director of Science. “No one has ever attempted such a mission, unique for its scientific implications as well as for its complex and spectacular interplanetary space manoeuvres.” Before reaching its target in 2014, Rosetta will circle the Sun four times on wide loops in the inner Solar System. During its long trek, the spacecraft will have to endure some extreme thermal conditions. Once it is close to Comet Churyumov-Gerasimenko, scientists will take it through a delicate braking manoeuvre; the spacecraft will then closely orbit the comet, and gently drop a lander on it. It will be landing on a small, fast-moving ‘cosmic bullet’ about whose 'geography' very little is known yet. An amazing 10-year interplanetary trek Rosetta is a three-tonne box-type spacecraft about three metres high, with two 14-metre solar panels. It consists of an orbiter and a lander. The lander is approximately one metre across and 80 centimetres high. It will be attached to the side of the orbiter during the journey to Comet Churyumov-Gerasimenko. Rosetta carries 21 experiments in total, 10 of them on the lander. They will be kept in hibernation during most of its 10-year trek towards the comet. Why does Rosetta's cruise need to take so long? To reach Comet Churyumov-Gerasimenko, the spacecraft needs to go out into deep space as far out from the Sun as Jupiter. No launcher could possibly get Rosetta there directly. ESA's spacecraft will gather speed from gravitational ‘kicks’ provided by four planetary fly-bys: one of Mars in 2007 and three of Earth in 2005, 2007 and 2009. During the trip, Rosetta will also twice pass through the asteroid belt, where a fly-by with one or more of these primitive objects is possible. A number of candidate targets have already been identified, but the final selection will be made after launch, once the amount of surplus fuel has been verified by mission engineers. During these encounters, scientists plan to switch on Rosetta's instruments for scientific studies of these largely unexplored Solar System bodies. Long trips in deep space include many hazards, such as extreme changes in temperature. Rosetta will leave the benign environment of near-Earth space to the dark, frigid regions beyond the asteroid belt. To manage these thermal loads, experts have done very tough pre-launch tests to study Rosetta's endurance. For example, they have heated its external surfaces to more than 150°C, then cooled it to -150°C in the next test. The spacecraft will be fully reactivated prior to the comet rendezvous manoeuvre in 2014. Then, Rosetta will orbit the comet - an object only about 4 kilometres in diameter - while it cruises through the inner Solar System at 135 000 kilometres per hour. At the time of the rendezvous - around 675 million kilometres from the Sun - Comet Churyumov-Gerasimenko will hardly show any surface activity. This means that the characteristic ‘coma’ (the comet’s ‘atmosphere’) and the tail will not be formed yet, because of the distance from the Sun. The comet's tail is in fact made of dust grains and frozen gases from the comet's surface that vaporise because of the Sun's heat. Over a period of six months, Rosetta will extensively map the comet's surface, prior to selecting a landing site. In November 2014, the lander will be ejected from the spacecraft from a height which could be as low as one kilometre. Touchdown will be at walking speed, about one metre per second. Immediately after touchdown, the lander will fire a harpoon into the ground to avoid bouncing off the surface back into space, since the comet’s extremely weak gravity alone would not hold onto the lander. Operations and scientific observations on the surface will last at least a week, but may continue for many months. Besides taking close-up pictures, the lander will drill into the dark organic crust and sample the primordial ices and gases. During and after the lander operations, Rosetta will continue orbiting and studying the comet: it will be the first spacecraft to witness at close quarters the changes taking place in a comet when the comet approaches the Sun and grows its coma and tail and then travels away from it. The trip will end in December 2015, after 12 years of adventure, when the comet has made its closest approach to the Sun and is on its way towards the outer Solar System. Studying a comet on the spot Rosetta's goal is to examine the comet in great detail. The instruments on the orbiter include several cameras and spectrometers that work at different wavelengths: infrared, ultraviolet, visible and microwave. In addition, there are various other instruments to make in situ analysis. Together, they will provide, amongst other things, very high-resolution images and information about the shape, density, temperature and chemical composition of the comet. Rosetta’s instruments will analyse the gases and dust grains in the coma that forms when the comet becomes active, as well as the interaction with the solar wind. The ten experiments on the lander will make an on-the-spot analysis of the composition and structure of the comet’s surface and subsurface material. A drilling system will take samples down to 30 centimetres below the surface and feed these to the ‘composition analysers’. Other instruments will measure properties such as near-surface strength, density, texture, porosity, ice phases and thermal properties. Microscopic studies of individual grains will tell us about the texture. Ground operations All scientific data including those relayed from the lander will be stored on the orbiter for downlink to Earth at the next ground station contact. ESA has installed a new deep-space antenna at New Norcia, near Perth in Western Australia, as the main communications link between the spacecraft and ESOC Mission Control in Darmstadt, Germany. This 35-metre diameter parabolic antenna allows the radio signal to reach distances of more than a million kilometres from Earth. The radio signals, travelling at the speed of light, will take up to 50 minutes to cover the distance between the spacecraft and Earth. Rosetta's Science Operations Centre, which will be responsible for collecting and distributing the scientific data, will share locations at ESOC and ESTEC in Noordwijk, The Netherlands. The Lander Control Centre is located at DLR in Cologne, Germany, and the Lander Science Centre at CNES in Toulouse, France. Building Rosetta Rosetta was selected as a mission in 1993. The spacecraft has been built by Astrium Germany as prime contractor. Major subcontractors are Astrium UK (spacecraft platform), Astrium France (spacecraft avionics), and Alenia Spazio (assembly, integration, and verification). Rosetta’s industrial team involves more than 50 contractors from 14 European countries, Canada and the United States. Scientific consortia from institutes across Europe and the United States have provided the instruments on the orbiter. A European consortium under the leadership of the German Aerospace Research Institute (DLR) has provided the lander. Rosetta has cost ESA EUR 770 million at 2000 economic conditions. This includes the launch and the entire period of development and mission operations from 1996 to 2015. The lander and the experiments, the so-called 'payload', are not included since they are funded by the member states through scientific institutes.

Rosetta - a comet ride to solve planetary mysteries

NASA Astrophysics Data System (ADS)

2003-01-01

Comets are very interesting objects for scientists, since their composition reflects how the Solar System was when it was very young and still 'unfinished', more than 4600 million years ago. Comets have not changed much since then. By orbiting Comet Wirtanen and landing on it, Rosetta will collect essential information to understand the origin and evolution of our Solar System. It will also help discover whether comets contributed to the beginnings of life on Earth. In fact comets are carriers of complex organic molecules, that - delivered to Earth through impacts - perhaps played a role in the origin of living forms. Furthermore, “volatile” light elements carried by comets may have also played an important role in forming the Earth’s oceans and atmopshere. “Rosetta is one of the most challenging missions ever undertaken so far”, says Prof. David Southwood, ESA Director of Science, “No one before attempted a similar mission, unique for its scientific implications as well as for its complex and spectacular interplanetary space manoeuvres”. Before reaching its target in 2011, Rosetta will circle the Sun almost four times on wide loops in the inner Solar System. During its long trek, the spacecraft will have to endure some extreme thermal conditions. Once it is close to Comet Wirtanen, scientists will take it through a delicate braking manoeuvre; then the spacecraft will closely orbit the comet, and gently drop a lander on it. It will be like landing on a small, fast-moving cosmic bullet that still has - at present - an almost unknown 'geography'. An amazing 8-year interplanetary trek Rosetta is a 3-tonne box-type spacecraft about 3 metres high, with two 14-metre long solar panels. It consists of an orbiter and a lander. The lander is approximately 1 metre across and 80 centimetres high. It will be attached to the side of the Rosetta orbiter during the journey to Comet Wirtanen. Rosetta carries 21 experiments in total, 10 of them on the lander. They will be kept in hibernation during most of its 8-year trek towards Wirtanen. What makes Rosetta's cruise so long? To reach Comet Wirtanen, the spacecraft needs to go out in deep space as far from the Sun as Jupiter is. No launcher could possibly get Rosetta there directly. ESA's spacecraft will gather speed from gravitational ‘kicks’ provided by three planetary fly-bys: one of Mars in 2005 and two of Earth in 2005 and 2007. During the trip, Rosetta will also visit two asteroids, Otawara (in 2006) and Siwa (in 2008). During these encounters, scientists will switch on Rosetta's instruments for calibration and scientific studies. Long trips in deep space include many hazards, such as extreme changes in temperature. Rosetta will leave the benign environment of near-Earth space to the dark, frigid regions beyond the asteroid belt. To manage these thermal loads, experts have done very tough pre-launch tests to study Rosetta's endurance. For example, they have heated its external surfaces to more than 150°C, then quickly cooled it to -180°C in the next test. The spacecraft will be fully reactivated prior to the comet rendezvous manoeuvre in 2011. Then, Rosetta will orbit the comet - an object only 1.2 km wide - while it cruises through the inner Solar System at 135 000 kilometres per hour. At that time of the rendezvous - around 675 million km from the Sun - Wirtanen will hardly show any surface activity. It means that the carachteristic coma (the comet’s ‘atmosphere’) and the tail will not be formed yet, because of the large distance from the Sun. The comet's tail is in fact made of dust grains and frozen gases from the comet's surface that vapourise because of the Sun's heat. During 6-month, Rosetta will extensively map the comet surface, prior to selecting a landing site. In July 2012, the lander will self-eject from the spacecraft from a height of just one kilometre. Touchdown will take place at walking speed - less than 1 metre per second. Immediately after touchdown, the lander will fire a harpoon into the ground to avoid bouncing off the surface back into space, since the extremely weak comet’s gravity alone would not hold onto the lander. Operations and scientific observations on the comet surface will last 65 hours as a minimum, but may continue for many months. During and after the lander operations, Rosetta will continue orbiting and studying the comet: Rosetta will be the first spacecraft to witness at close quarters the changes taking place in a comet when the comet approaches the Sun and grows its coma and tail. The trip will end in July 2013, after 10.5 years of adventure, when the comet is closest to the Sun. Studying a comet on the spot Rosetta's goal is to examine the comet in great detail. The instruments on Rosetta orbiter include several cameras, spectrometers, and experiments that work at different wavelengths --infrared, ultraviolet, microwave, radio and a number of sensors. They will provide, among other things, very high-resolution images and information about the shape, density, temperature, and chemical composition of the comet. Rosetta’s instruments will analyse the gases and dust grains in the so-called “coma” that forms when the comet becomes active, as well as the interaction with the solar wind. The 10 instruments on board the lander will do an on-the-spot analysis of the composition and structure of the comet’s surface and subsurface material. A drilling system will take samples down to 30 centimetres below the surface and will feed these to the ‘composition analysers’. Other instruments will measure properties such as near-surface strength, density, texture, porosity, ice phases, and thermal properties. Microscopic studies of individual grains will tell us about the texture. In addition, instruments on the lander will study how the comet changes during the day-night cycle, and while it approaches the Sun. Ground operations Data from the lander are relayed to the orbiter, which stores them for downlink to Earth at the next ground station contact. ESA has installed a new deep-space antenna at New Norcia, near Perth in Western Australia, as the main communications link between the spacecraft and the ESOC Mission Control in Darmstadt, Germany. This 35-metre diameter parabolic antenna allows the radio signal to reach distances of more than 1 million kilometres from Earth. The radio signals, travelling at the speed of light, will take up to 50 minutes to cover the distance between the spacecraft and Earth. Rosetta's Science Operations Centre, which is responsible for collecting and distributing the scientific data, will share a location at ESOC and ESTEC in Noordwijk, The Netherlands. The Lander Control Centre is located in DLR in Cologne, Germany, and the Lander Science Centre in CNES in Toulouse, France. Building Rosetta Rosetta was selected as a mission in 1993. The spacecraft has been built by Astrium Germany as prime contractor. Major subcontractors are Astrium UK (spacecraft platform), Astrium France (spacecraft avionics), and Alenia Spazio (assembly, integration, and verification). Rosetta’s industrial team involves more than 50 contractors from 14 European countries, Canada and the United States. Scientific consortia from institutes across Europe and the United States have provided the instruments on the orbiter. A European consortium under the leadership of the German Aerospace Research Institute (DLR) has provided the lander. Rosetta has cost ESA Euro 701 million at 2000 economic conditions. This amount includes the launch and the entire period of development and mission operations from 1996 to 2013. The lander and the experiments, the so-called 'payload', are not included since they are funded by the member states through the scientific institutes. Note to editors Europe is certainly a pioneer in comet exploration. In 1986, ESA’s spacecraft Giotto performed the closest comet fly-by ever achieved by any spacecraft (at a distance of 600 kilometres of Halley). It sent back wonderful pictures and data that showed that comets contain complex organic molecules. These kinds of compounds are rich in carbon, hydrogen, oxygen, and nitrogen. Intriguingly, these are the elements which make up nucleic acids and amino acids, which are essential ingredients for life as we know it. Giotto continued its successful journey and flew by Comet Grigg-Skjellerup in 1992 within about 200 km distance. Now scientists will be eagerly waiting to be able to answer some of the new intriguing questions that arose from analysing the exciting results from Giotto. Other past missions that have flown by a comet were: NASA’s ICE mission in 1985, the two Russian VEGA spacecraft and the two Japanese spacecraft Suisei and Sakigake that were part of the armada that visited comet Halley in 1986; NASA’s Deep Space 1 flew-by comet Borelly in 2001 and NASA’s Stardust will fly-by comet Wild 2 in early 2004 and will return samples of the comet’s coma in 2006. Unfortunately NASA’s Contour launched in Summer 2002 failed when it was inserted onto its interplanetary trajectory. In 2004 we will see the launch of Deep Impact, a spacecraft that will shoot a massive block of copper into a comet nucleus.

Distal Renal Tubular Acidosis and Calcium Nephrolithiasis

NASA Astrophysics Data System (ADS)

Moe, Orson W.; Fuster, Daniel G.; Xie, Xiao-Song

2008-09-01

Calcium stones are commonly encountered in patients with congenital distal renal tubular acidosis, a disease of renal acidification caused by mutations in either the vacuolar H+-ATPase (B1 or a4 subunit), anion exchanger-1, or carbonic anhydrase II. Based on the existing database, we present two hypotheses. First, heterozygotes with mutations in B1 subunit of H+-ATPase are not normal but may harbor biochemical abnormalities such as renal acidification defects, hypercalciuria, and hypocitraturia which can predispose them to kidney stone formation. Second, we propose at least two mechanisms by which mutant B1 subunit can impair H+-ATPase: defective pump assembly and defective pump activity.

Treatment efficacy and outcomes using a third generation shockwave lithotripter.

PubMed

Neisius, Andreas; Wöllner, Jens; Thomas, Christian; Roos, Frederik C; Brenner, Walburgis; Hampel, Christian; Preminger, Glenn M; Thüroff, Joachim W; Gillitzer, Rolf

2013-11-01

To evaluate the clinical efficiency of a third generation electromagnetic shock wave lithotripter, the Lithoskop(®) (Siemens, Erlangen, Germany), regarding outcomes, stone disintegration, retreatment and complication rates. To compare the results of the Lithoskop with other currently available systems and the reference standard lithotripter, the HM-3 (Dornier MedTech Europe GmbH, Wessling, Germany). We analysed the data from 183 patients, including 13 children, undergoing extracorporeal shock wave lithotripsy (ESWL) for renal and ureteric calculi collected from a prospectively populated database. Outcomes were assessed by plain abdominal film of kidney, ureter and bladder and renal ultrasonography for radiopaque and computerized tomography for radiolucent stones 1 day after treatment and after 3 months. We analysed stone size and location before and after treatment, stone disintegration rate, retreatment rate, stone-free and residual fragment rates after 3 months, along with auxiliary procedures and complications. The mean (range) patient age was 48.6 (1.3-81.4) years, including 13 children with a mean (range) age of 8.4 (1.3-16.7) years, and 77% of the patients were male. In all, 46% of the calculi were localized in the kidney and 54% in the ureter. Renal stones were localized in the upper, middle and lower calyx and in the renal pelvis in 9, 29, 30 and 32% of patients, respectively. Ureteric stones were localized in the upper, mid- and distal ureter in 29, 19 and 52% of patients, respectively. The median (range) stone size before ESWL was 10 (4-25) mm in the kidney and 8 (4-28) mm in the ureteric calculi. The overall stone-free rate after 3 months was 91% (88% for renal and 93% for ureteric calculi); the mean number of sessions to achieve these rates was 1.3. Stone-free rates and the required number of sessions were determined only by stone size. In 7.1% of the patients (n = 13) post-interventional auxiliary procedures were necessary. We observed one perirenal haematoma as a major complication (0.5%), but this did not require any further therapy. Clinical stone-free rates with the Lithoskop are high and similar to those of other available systems, including the reference standard HM-3 lithotripter. Retreatment and complication rates are low, supporting the use of ESWL as first-line therapy for urinary calculi <10 mm, independent of stone location. © 2013 The Authors. BJU International © 2013 BJU International.

Early evolution of comet 67P studied with the RPC-LAP onboard Rosetta

NASA Astrophysics Data System (ADS)

Miloch, Wojciech; Edberg, Niklas J. T.; Eriksson, Anders I.; Yang, Lei; Paulsson, Joakim J. P.; Wedlund, Cyril Simon; Odelstad, Elias

2016-07-01

The Rosetta mission provides the in-situ measurements of a comet that are closest to a comet's aphelion ever made. The Rosetta Plasma Consortium (RPC) is a set of five instruments on board the spacecraft that specialise in the measurements of the plasma environment of comet 67P. One of the instruments is RPC-LAP, which consists of two Langmuir Probes and can measure the density, temperature, and flow speed of the plasma in the vicinity of the comet. At the early stage of the Rosetta mission, when the spacecraft is far from the nucleus of comet 67P, the ion part of the current-voltage characteristics of RPC-LAP1 is dominated by the photoemission current which surpasses the currents from the dilute solar wind plasma. As Rosetta starts orbiting around the nucleus in September 2014, LAP1 picks up signatures of local plasma density enhancements corresponding to variations of water-group ions observed in the vicinity of the comet. With the help of current-voltage characteristics and the spacecraft potential, we identify and characterise in space and time the entering of this coma-dominated plasma. In particular we determine the transition for entering the ion dominated region characterised by the 6-hour variations in the local plasma density due to the comet rotation. This transition manifests as a steep gradient in the density with respect to the distance to the comet nucleus. We discuss these RPC-LAP results together with the corresponding measurements by other instruments to provide a comprehensive picture of the transition.

Behind the Scenes of the Discovery Channel's Rosetta Mission Documentary Special

NASA Astrophysics Data System (ADS)

Ayres, S.

2016-03-01

On the evening of 12 November 2014, the Discovery Channel documentary Landing on a Comet: Rosetta Mission was broadcast around the world. This was the culmination of months of preparation and behind-the-scenes lming. Shelley Ayres, the producer, director and writer of the one-hour special recounts how this came about and re ects on her experience.

Rosetta launch postponed

NASA Astrophysics Data System (ADS)

2003-01-01

The Review Board called for Arianespace and all its partners to make sure, in the framework of a programme for the resumption of Ariane 5 flights, that all Ariane 5 system qualification and review processes have been checked. Arianespace and the European Space Agency, together with all interested parties, are now going to consult each other in order to determine arrangements for the soonest possible launch of Rosetta.

Rosetta:MSF: a modular framework for multi-state computational protein design.

PubMed

Löffler, Patrick; Schmitz, Samuel; Hupfeld, Enrico; Sterner, Reinhard; Merkl, Rainer

2017-06-01

Computational protein design (CPD) is a powerful technique to engineer existing proteins or to design novel ones that display desired properties. Rosetta is a software suite including algorithms for computational modeling and analysis of protein structures and offers many elaborate protocols created to solve highly specific tasks of protein engineering. Most of Rosetta's protocols optimize sequences based on a single conformation (i. e. design state). However, challenging CPD objectives like multi-specificity design or the concurrent consideration of positive and negative design goals demand the simultaneous assessment of multiple states. This is why we have developed the multi-state framework MSF that facilitates the implementation of Rosetta's single-state protocols in a multi-state environment and made available two frequently used protocols. Utilizing MSF, we demonstrated for one of these protocols that multi-state design yields a 15% higher performance than single-state design on a ligand-binding benchmark consisting of structural conformations. With this protocol, we designed de novo nine retro-aldolases on a conformational ensemble deduced from a (βα)8-barrel protein. All variants displayed measurable catalytic activity, testifying to a high success rate for this concept of multi-state enzyme design.

Fully Flexible Docking of Medium Sized Ligand Libraries with RosettaLigand

PubMed Central

DeLuca, Samuel; Khar, Karen; Meiler, Jens

2015-01-01

RosettaLigand has been successfully used to predict binding poses in protein-small molecule complexes. However, the RosettaLigand docking protocol is comparatively slow in identifying an initial starting pose for the small molecule (ligand) making it unfeasible for use in virtual High Throughput Screening (vHTS). To overcome this limitation, we developed a new sampling approach for placing the ligand in the protein binding site during the initial ‘low-resolution’ docking step. It combines the translational and rotational adjustments to the ligand pose in a single transformation step. The new algorithm is both more accurate and more time-efficient. The docking success rate is improved by 10–15% in a benchmark set of 43 protein/ligand complexes, reducing the number of models that typically need to be generated from 1000 to 150. The average time to generate a model is reduced from 50 seconds to 10 seconds. As a result we observe an effective 30-fold speed increase, making RosettaLigand appropriate for docking medium sized ligand libraries. We demonstrate that this improved initial placement of the ligand is critical for successful prediction of an accurate binding position in the ‘high-resolution’ full atom refinement step. PMID:26207742

Balancing exploration and exploitation in population-based sampling improves fragment-based de novo protein structure prediction.

PubMed

Simoncini, David; Schiex, Thomas; Zhang, Kam Y J

2017-05-01

Conformational search space exploration remains a major bottleneck for protein structure prediction methods. Population-based meta-heuristics typically enable the possibility to control the search dynamics and to tune the balance between local energy minimization and search space exploration. EdaFold is a fragment-based approach that can guide search by periodically updating the probability distribution over the fragment libraries used during model assembly. We implement the EdaFold algorithm as a Rosetta protocol and provide two different probability update policies: a cluster-based variation (EdaRose c ) and an energy-based one (EdaRose en ). We analyze the search dynamics of our new Rosetta protocols and show that EdaRose c is able to provide predictions with lower C αRMSD to the native structure than EdaRose en and Rosetta AbInitio Relax protocol. Our software is freely available as a C++ patch for the Rosetta suite and can be downloaded from http://www.riken.jp/zhangiru/software/. Our protocols can easily be extended in order to create alternative probability update policies and generate new search dynamics. Proteins 2017; 85:852-858. © 2016 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Improved cryoEM-Guided Iterative Molecular Dynamics–Rosetta Protein Structure Refinement Protocol for High Precision Protein Structure Prediction

PubMed Central

2016-01-01

Many excellent methods exist that incorporate cryo-electron microscopy (cryoEM) data to constrain computational protein structure prediction and refinement. Previously, it was shown that iteration of two such orthogonal sampling and scoring methods – Rosetta and molecular dynamics (MD) simulations – facilitated exploration of conformational space in principle. Here, we go beyond a proof-of-concept study and address significant remaining limitations of the iterative MD–Rosetta protein structure refinement protocol. Specifically, all parts of the iterative refinement protocol are now guided by medium-resolution cryoEM density maps, and previous knowledge about the native structure of the protein is no longer necessary. Models are identified solely based on score or simulation time. All four benchmark proteins showed substantial improvement through three rounds of the iterative refinement protocol. The best-scoring final models of two proteins had sub-Ångstrom RMSD to the native structure over residues in secondary structure elements. Molecular dynamics was most efficient in refining secondary structure elements and was thus highly complementary to the Rosetta refinement which is most powerful in refining side chains and loop regions. PMID:25883538

The flyby of Rosetta at asteroid Šteins - mission and science operations

NASA Astrophysics Data System (ADS)

Accomazzo, Andrea; Wirth, Kristin R.; Lodiot, Sylvain; Küppers, Michael; Schwehm, Gerhard

2010-07-01

The international Rosetta mission, a cornerstone mission of the european space agency scientific Programme, was launched on 2nd March 2004 on its 10 years journey towards a rendezvous with comet Churyumov-Gerasimenko ( Gardini et al., 1999). During its interplanetary flight towards its target Rosetta crosses the asteroid belt twice with the opportunity to observe at close quarters two asteroids: (2867)-Šteins in 2008 and (21)-Lutetia in 2010. The spacecraft design was such that these opportunities could be fully exploited to deliver valuable data to the scientific community. The mission trajectory was controlled such that Rosetta would fly next to asteroid Šteins on the 5th of September 2008 with a relative speed of 8.6 km/s at a minimum distance of 800 km. Mission operations have been carefully planned to achieve the best possible flyby scenario and scientific outcome. The flyby scenario, the optical navigation campaign, and the planning of the scientific observations had to be adapted by the Mission and the Science Operations Centres to the demanding requirements expressed by the scientific community. The flyby was conducted as planned with a large number of successful observations.

Hypercalcemia, hypercalciuria, and kidney stones in long-term studies of vitamin D supplementation: a systematic review and meta-analysis.

PubMed

Malihi, Zarintaj; Wu, Zhenqiang; Stewart, Alistair W; Lawes, Carlene Mm; Scragg, Robert

2016-10-01

Vitamin D supplementation is increasingly being used in higher doses in randomized controlled trials (RCTs). However, adverse events from very large annual doses of vitamin D have been shown in 2 RCTs, whereas in a third RCT, low-dose vitamin D, with calcium supplements, was shown to increase kidney stone risk. We analyzed the side effects related to calcium metabolism in RCTs, specifically hypercalcemia, hypercalciuria, and kidney stones, in participants who were given vitamin D supplements for ≥24 wk compared with in subjects in the placebo arm. The following 3 main online databases were searched: Ovid Medline (PubMed), EMBASE, and the Cochrane Library. Software was used for the meta-analysis. A total of 48 studies with 19,833 participants were identified, which reported ≥1 of the following side effects: hypercalcemia, hypercalciuria, or kidney stones. Of these studies, kidney stones were reported in only 9 trials with a tendency for fewer subjects reporting stones in the vitamin D arm than in the placebo arm (RR: 0.66, 95% CI: 0.41, 1.09; P = 0.10). In 37 studies, hypercalcemia was shown with increased risk shown for the vitamin D group (RR: 1.54; 95% CI: 1.09, 2.18; P = 0.01). Similar increased risk of hypercalciuria was shown in 14 studies for the vitamin D group (RR: 1.64; 95% CI: 1.06, 2.53; P = 0.03). In subgroup analyses, it was shown that the effect of vitamin D supplementation on risk of hypercalcemia, hypercalciuria, or kidney stones was not modified by baseline 25-hydroxyvitamin D, vitamin D dose and duration, or calcium co-supplementation. Long-term vitamin D supplementation resulted in increased risks of hypercalcemia and hypercalciuria, which were not dose related. However, vitamin D supplementation did not increase risk of kidney stones. Additional large RCTs of long-term vitamin D supplementation are required to confirm these findings. © 2016 American Society for Nutrition.

Digitalization of the exceptional building and decorative stones collection of the Natural History Museum Vienna

NASA Astrophysics Data System (ADS)

Ferrière, Ludovic; Steinwender, Christian

2014-05-01

The Natural History Museum Vienna (NHMV) owns one of the largest building, decorative, and ornamental stones collections in Europe. This important collection dates back to the 19th century and was initiated by curator Felix Karrer after a donation of the "Union-Baugesellschaft" (Karrer, 1892). It contains rock samples used for the construction of most of the famous buildings and monuments in Vienna and in the entire Austria and surrounding countries, as well as from other famous constructions and antique (Egyptian, Greek, Roman, etc.) monuments in the world. Decorative stones that were used for the inside parts of buildings as well as artificial materials, such as stucco, tiles, and building-materials like gravel, are also part of this collection. Unfortunately, most specimens of this collection cannot be displayed at the NHMV (i.e., only 500 specimens are visible in the display Hall I) and are therefore preserved in storage rooms, and not accessible to the public. The main objective of our project of digitalization is to share our rock collection and all treasures it contains with the large majority of interested persons, and especially to provide knowledge on these rocks for people who need this information, such as people who work in cultural, architectural, scientific, and commercial fields. So far 4,500 samples from our collection have been processed with the support of the Open Up! project (Opening up the Natural History Heritage for Europeana). Our database contains all information available on these samples (including e.g., the name of the rock, locality, historic use, heritage utilization, etc.), high-quality digital photographs (with both top and bottom sides of the samples), and scanned labels (both "old" NHMV labels and other (original) labels attached to the samples). We plan to achieve the full digitalization of our unique collection within the next two years and to develop a website to provide access to the content of our database (if adequate funding is obtained), - a unique way to show the public these thousands of objects, and also to facilitate the work of architects and stone/building conservation workers who need information about these (historical) stones. This website would be a bridge between our "museum and scientific expertise" and people from the "culture, renovation, and architecture" fields. We see our database & website as a crossover media between "geology" and the numerous fields in which rocks are used, knowing that we will provide information on where these stones were/are excavated as well as the place where they were/are used. Such type of information is also of interest for historians and archaeologists. References: Karrer F. 1892. Führer durch die Baumaterial-Sammlung des k. k. naturhistorischen Hofmuseums in Wien. Verlag von R. Lechner's k. u. k. Hof- und Univ.-Buchhandlung, Wien. 304p.

Renal diseases in adults with cystic fibrosis: a 40 year single centre experience.

PubMed

Wilcock, M J; Ruddick, A; Gyi, K M; Hodson, M E

2015-10-01

There is a sizable literature describing renal disease in patients with cystic fibrosis. Previous studies have focused on single disease processes alone, most commonly renal stone disease or acute kidney injury. In this study we report for the first time on the prevalence of all forms of renal disease in a cystic fibrosis population. A retrospective review of adult patients with cystic fibrosis attending the Adult Cystic Fibrosis Department at the Royal Brompton Hospital was carried out by searching the department's database to identify patients with renal problems and subsequently retrieving clinical information from medical notes. The prevalence of all renal diseases in our population was 5.1 %. The most commonly identified problem was renal stones. At 2.0 % the prevalence of renal stones in adult patients with cystic fibrosis was comparable to the general population. A range of other renal diseases were identified, the next most common being drug-induced acute kidney injury. A range of cystic fibrosis independent and attributable diseases has been identified but no cystic fibrosis specific disease. In contrast to other cystic fibrosis centres no increased prevalence of renal stones was found.

The use of local natural stone in construction of St. Petersburg region and south-east Finland

NASA Astrophysics Data System (ADS)

Luodes, Hannu; Härmä, Paavo; Panova, Elena; Pirinen, Heikki; Selonen, Olavi

2013-04-01

A three-year project, started in 2012, "Efficient use of natural stone in the Leningrad region and South-East Finland", studies the use and durability of natural stone in the city environments in the Nordic climate and especially along the Eastern Baltic Sea coastline between Helsinki and St. Petersburg. The project is lead by the Geological Survey of Finland (GTK) and the partners in the project are Saimaa University of Applied Sciences from Finland and Federal State Unitary Enterprise "Petersburg Complex Geological Expedition" Russian together with Saint-Petersburg State University from the Russian Federation. As associates in this project are also natural stone companies from Finland, Ylämaa Group Oy and Palin Granit Oy. The project is co-funded by the European Union, the Russian Federation and the Republic of Finland through the European Neighbourhood and Partnership Instrument (ENPI). A great potential of natural stone that can be used in construction is located in the border zone between South-East Finland and the Leningrad region. Rapakivi granite from that area has been utilized for several important buildings worldwide since 18th century and the area holds still potential for future economic growth. The use of the stone particularly from this area is based on its visual expression and good properties with high durability and long life cycle that can be used as arguments in the future development. Strengthening of the knowledge of the material reserves in the area gives a long term basement for economic development. Special aim of the project is to promote the use of natural stone in the city construction, especially the use of left-over stone generated in the production. In the project the use of natural stone in larger cities from the 18th century until today including the towns St. Petersburg, Vyborg, Helsinki, Kuopio and Kotka will be reported. Also an analysis of the near future needs of natural stone (qualities and quantities) in reconstruction and construction in the southern Finland and St. Petersburg regions will be documented. That is to generate ideas for definition of new environmental building products using left-over natural stone from quarrying. The project will provide detailed data about long term durability of stone structures in the cities that are along the Baltic Sea shoreline (St. Petersburg, Helsinki) and subject to both mechanical and biological weathering. Mechanical weathering by several annual freeze-thaw cycles is especially typical in these coastal climate conditions. The data will be used in characterization of the durability and weathering mechanisms of different stone types and is used in preparation of guidelines of stone selection for construction and renovation. The data on natural stone resources in the project area will be evaluated and collected in a database. Also the best natural stone evaluation methods from Finland and Russia will be assessed to produce a guidance of best practices for prospecting and evaluation of natural stone occurrences. The project will also generate suggestions for making the natural stone trade between the EU and Russia easier.

Rosetta comet-chaser takes a close look at planet Mars

NASA Astrophysics Data System (ADS)

2007-09-01

Its final destination is comet Churyumov-Gerasimenko, which it will reach only in 2014, after travelling some 6000 million kilometres in 10 years (its epic voyage began on 2 March 2004 with a launch by an Ariane 5 rocket). Rosetta will next be heading for the Sun, and its journey will require two more swing-bys around the Earth, in November this year and November 2009. Once at its destination, Rosetta will first deposit, from a height of about one kilometre, a small but very complex lander on the comet’s nucleus. This lander, a sort of miniature chemical laboratory packed with sophisticated instruments, will analyse the surface and provide information on the nucleus. The Rosetta probe will then chase the comet for one year and observe its nucleus as it continues on its trip towards the inner solar system at a speed of 135,000 km per hour. There is still a long way to go, but so far everything seems to be going exactly according to plan. ESA's Director of Science, David Southwood, witnessing the Mars swing-by at ESOC with scientists involved in the mission and the operations teams, said: "Interplanetary expeditions rely on very complex communication links. ESA’s mission operations centre here in Darmstadt is doing a great job. I and all the scientists involved in the mission are grateful to the experts who are taking such good care of 'our baby'. And this is only the beginning. The true excitement of targeting and releasing the lander on the comet’s nucleus is yet to come. Today we have reached another milestone on the way to finding an answer to questions such as whether life on Earth began with the help of comets." “The successful Mars swingby of the ESA Rosetta spacecraft has been the most critical event in the mission since launch. Now we are heading back to Earth in order to gain, in November this year, further momentum for the subsequent visits of the asteroids and the comet. I would like to thank all those who have contributed to this achievement”, said Manfred Warhaut, Head of the Mission Operations Department. During the approach to Mars, instruments onboard Rosetta - as well as on its lander - were switched on at predefined times to observe the environment and take imagery of the Red Planet. In September 2008 and July 2010, when it is deep inside the asteroid belt between Mars and Jupiter, Rosetta will also observe the asteroids Stein and Lutetia close up.

Solar-insolation-induced changes in the coma morphology of comet 67P/Churyumov-Gerasimenko. Optical monitoring with the Nordic Optical Telescope

NASA Astrophysics Data System (ADS)

Zaprudin, B.; Lehto, H. J.; Nilsson, K.; Somero, A.; Pursimo, T.; Snodgrass, C.; Schulz, R.

2017-07-01

Context. 67P/Churyumov-Gerasimenko (67P/C-G) is a short-period Jupiter family comet with an orbital period of 6.55 yr. Being the target comet of ESA's Rosetta mission, 67P/C-G has become one of the most intensively studied minor bodies of the solar system. The Rosetta Orbiter and the Philae Lander have brought us unique information about the structure and activity of the comet nucleus, as well as its activity along the orbit, composition of gas, and dust particles emitted into the coma. However, as Rosetta stayed in very close proximity to the cometary nucleus (less than 500 km with a few short excursions reaching up to 1500 km), it could not see the global picture of a coma at the scales reachable by telescopic observations (103 - 105 km). Aims: In this work we aim to connect in-situ observations made by Rosetta with the morphological evolution of the coma structures monitored by the ground-based observations. In particular, we concentrate on causal relationships between the coma morphology and evolution observed with the Nordic Optical Telescope (NOT) in the Canary Islands, and the seasonal changes of the insolation and the activity of the comet observed by the Rosetta instruments. Methods: Comet 67P/C-G was monitored with the NOT in imaging mode in two colors. Imaging optical observations were performed roughly on a weekly basis, which provides good coverage of short- and long-term variability. With the three dimensional modeling of the coma produced by active regions on the southern hemisphere, we aim to qualify the observed morphology by connecting it to the activity observed by Rosetta. Results: During our monitoring program, we detected major changes in the coma morphology of comet 67P/C-G. These were long-term and long-lasting changes. They do not represent any sudden outburst or short transient event, but are connected to seasonal changes of the surface insolation and the emergence of new active regions on the irregular shaped comet nucleus. We have also found significant deviations in morphological changes from the prediction models based on previous apparitions of 67P/C-G, like the time delay of the morphology changes and the reduced activity in the northern hemisphere. According to our modeling of coma structures and geometry of observations, the changes are clearly connected with the activity in the southern hemisphere observed by the Rosetta spacecraft.

Risk of chronic and end stage kidney disease in patients with nephrolithiasis.

PubMed

Shoag, Jonathan; Halpern, Joshua; Goldfarb, David S; Eisner, Brian H

2014-11-01

We examine kidney stone disease as a potential risk factor for chronic kidney disease, end stage kidney disease and treatment with dialysis. The NHANES (National Health and Nutrition Examination Survey) 2007-2010 database was interrogated for patients with a history of kidney stones. Demographics and comorbid conditions including age, gender, body mass index, diabetes, hemoglobin A1c, hypertension, gout and smoking were also assessed. Multivariate analysis adjusting for patient demographics and comorbidities was performed to assess differences in the prevalence of chronic kidney disease and treatment with dialysis between the 2 groups. History of nephrolithiasis was assessed with the question, "Have you ever had kidney stones?" Chronic kidney disease was defined as an estimated glomerular filtration rate of less than 60 ml/minute/1.73 m(2) and/or a urinary albumin-to-creatinine ratio greater than 30 mg/gm. Statistical calculations were performed using Stata® software with determinations of p values and 95% CI where appropriate. The study included an analysis of 5,971 NHANES participants for whom data on chronic kidney disease and kidney stones were available, of whom 521 reported a history of kidney stones. On multivariate analysis a history of kidney stones was associated with chronic kidney disease and treatment with dialysis (OR 1.50, 1.10-2.04, p = 0.013 and OR 2.37, 1.13-4.96, p = 0.025, respectively). This difference appeared to be driven by women, where a history of kidney stones was associated with a higher prevalence of chronic kidney disease (OR 1.76, 1.13-2.763, p = 0.016) and treatment with dialysis (OR 3.26, 1.48-7.16, p = 0.004). There was not a significant association between kidney stone history and chronic kidney disease or treatment with dialysis in men. Kidney stone history is associated with an increased risk of chronic kidney disease and treatment with dialysis among women even after adjusting for comorbid conditions. Large scale prospective studies are needed to further characterize the relationship between nephrolithiasis and chronic kidney disease. Copyright © 2014 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Hello World: Harnessing social media for the Rosetta mission

NASA Astrophysics Data System (ADS)

Baldwin, E.; Mignone, C.; O'Flaherty, K. S.; Homfeld, A.-M.; Bauer, M.; McCaughrean, M. J.

2015-10-01

The European Space Agency's (ESA) comet-chasing Rosetta mission was launched in 2004, before social media became a popular tool for mainstream communication. By harnessing a range of platforms for communicating the key messages of this unprecedented space adventure as the spacecraft reached its destination ten years later, a wide range of new audiences were reached and could follow this once-in-a-lifetime mission.

Interventional Endoscopy Database for Pancreatico-biliary, Gastrointestinal and Esophageal Disorders

ClinicalTrials.gov

2017-02-16

Ampullary Cancer; Duodenal Cancer; Bile Duct Cancer; Bile Duct Disorders; Gallstones; Obstructive Jaundice; Pancreatic Disorders (Noncancerous); Colorectal Cancer; Esophageal Cancer; Barrett's Esophagus; Gastric Malignancies; Pancreatic Cancer; Pediatric Gastroenterology; Cholangiocarcinoma; Pancreatic Pseudocysts; Acute and Chronic Pancreatitis; Recurrent Pancreatitis; Cholangitis; Bile Leak; Biliary Strictures; Pancreatic Divisum; Biliary and Pancreatic Stones; Choledocholithiasis

Using Film To Teach History: An ERIC/ChESS Sample.

ERIC Educational Resources Information Center

Pinhey, Laura

2002-01-01

Provides citations with abstracts from the ERIC database focusing on using film to teach history. Includes background information and teaching materials on topics such as using documentary films, the use of film and television to teach history, and teaching history using the film,"JFK," by Oliver Stone. (CMK)

Out of the Stone Age

ERIC Educational Resources Information Center

Kademan, Robyn

2005-01-01

One of the most beneficial uses for technology in the science classroom is data manipulation. During labs and other learning experiences, students can quickly put the data they collect into spreadsheets or databases. Then they can make comparisons, create graphs, draw conclusions, sort the data in new ways, and, ultimately, give their data…

Rosetta following a living comet

NASA Astrophysics Data System (ADS)

Accomazzo, Andrea; Ferri, Paolo; Lodiot, Sylvain; Pellon-Bailon, Jose-Luis; Hubault, Armelle; Porta, Roberto; Urbanek, Jakub; Kay, Ritchie; Eiblmaier, Matthias; Francisco, Tiago

2016-09-01

The International Rosetta Mission was launched on 2nd March 2004 on its 10 year journey to rendezvous with comet 67P Churyumov-Gerasimenko. Rosetta performed comet orbit insertion on the 6th of August 2014, after which it characterised the nucleus and orbited it at altitudes as low as a few kilometres. In November 2014 Rosetta delivered the lander Philae to perform the first soft landing ever on the surface of a comet. The critical landing operations have been conducted with remarkable accuracy and will constitute one of the most important achievements in the history of spaceflight. After this critical operation, Rosetta began the escort phase of the comet in its journey in the Solar System heading to the perihelion, reached in August 2015. Throughout this period, the comet environment kept changing with increasing gas and dust emissions. A first phase of bound orbits was followed by a sequence of complex flyby segments which allowed the scientific instruments to perform in depth investigation of the comet environment and nucleus. The unpredictable nature of the comet activity forced the mission control team to implement unplanned changes to the flight plan prepared for this mission phase and to plan the whole mission in a more dynamic way than originally conceived. This paper describes the details of the landing operations and of the main comet escort phase. It also includes the mission status as achieved after perihelion and the findings about the evolution of the comet and its environment from a mission operations point of view. The lessons learned from this unique and complex operations phase and the plans for the next mission phases, which include a mission extension into 2016, are also described.

Preliminary Inventory in the Early Coma of Comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Calmonte, Ursina; Altwegg, Kathrin; Le Roy, Léna; Rubin, Martin; Berthelier, Jean-Jacques; De Keyser, Johan; Fiethe, Björn; Fuselier, Steve A; Combi, Mike

2014-11-01

After a 10-year journey, the European Space Agency’s Rosetta mission encountered its target comet Churyumov-Gerasimenko. Rosetta will accompany the comet to perihelion and beyond. On board the Rosetta spacecraft is the ROSINA (Rosetta Orbiter Spectrometer for Ion and Neutral Analysis) experiment. ROSINA consists of a pressure sensor and two complementary mass spectrometers. One is the Double Focusing Mass Spectrometer, which has high dynamic range and a mass resolution m/Δm = 3000 at 1% peak height (m/Δm = 9000 at 50% peak height) at mass 28 amu/q. It is therefore well suited to detect minor species in the lower mass range up to mass 140 amu [1].ROSINA has been taking data since May 2014 and first signals of the comet were detected at the beginning of August. We will present a preliminary inventory of species seen by ROSINA in the early coma of comet Churyumov-Gerasimenko.References[1] Balsiger, H., Altwegg, K., Bochsler, P., Eberhardt, P., Fischer, J., Graf, S., Jäckel, A., Kopp, E., Langer, U., Mildner, M., Müller, J., Riesen, T., Rubin, M., Scherer, S., Wurz, P., Wüthrich, S., Arijs, E., Delanoye, S., de Keyser, J., Neefs, E., Nevejans, D., Rème, H., Aoustin, C., Mazelle, C., Médale, J.-L., Sauvaud, J.A., Berthelier, J.-J., Bertaux, J.-L., Duvet, L., Illiano, J.-M., Fuselier, S.A., Ghielmetti, A.G., Magoncelli, T., Shelley, E.G., Korth, A., Heerlein, K., Lauche, H., Livi, S., Loose, A., Mall, U., Wilken, B., Gliem, F., Fiethe, B., Gombosi, T.I., Block, B., Carignan, G.R., Fisk, L.A., Waite, J.H., Young, D.T. and Wollnik, H.,. Rosina Rosetta Orbiter Spectrometer for Ion and Neutral Analysis, Space Science Reviews 128, pp745-801, 2007.

Evolution of the coma composition at 67P/Churyumov-Gerasimenko as seen by ROSINA/Rosetta from November 2014 to April 2015

NASA Astrophysics Data System (ADS)

Gasc, Sébastien; Altwegg, Kathrin; Balsiger, Hans; Calmonte, Ursina; Galli, André; Jäckel, Annette; Le Roy, Léna; Rubin, Martin; Tzou, Chia-Yu; Wurz, Peter; Berthelier, Jean-Jacques; Fiethe, Björn; Fuselier, Stephen; Gombosi, Tamas; De Keyser, Johan; Mall, Urs; Rème, Henri

2015-04-01

The European Space Agency's Rosetta spacecraft, with the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) onboard [1], has been following and observing comet 67P/Churyumov-Gerasimenko (67P/C-G) since August 2014. ROSINA has provided new information on the molecular, elemental, and isotopic composition of 67P/C-G's coma [2,3]. ROSINA consists of a pressure sensor (COPS) and two mass spectrometers, the Double Focusing Mass Spectrometer (DFMS) and the Reflectron Time Of Flight mass spectrometer (RTOF). DFMS has a high mass resolution (ca. 3'000 at 1%) and a high sensitivity, whereas RTOF has a wide mass range (from 1 amu/e to >300 amu/e) and a high temporal resolution. Both mass spectrometers are designed to measure cometary neutral gas as well as cometary ions. In this work, we present the first results and discuss the evolution of the composition of the coma measured by ROSINA from November 2014 until the end of March 2015. During this period, Rosetta delivered the lander, then stayed in bound orbits at distances of 20-30 km away from the comet center, and finally performed comet flybys from 10 km up to 250 km away from 67P/C-G. [1] Balsiger, H. et al.: ROSINA-Rosetta Orbiter Spectrometer for Ion and Neutral Analysis, Space Science Reviews, Vol. 128, 745-801, 2007 [2] Altwegg, K. et al.: Comet 67P/Churyumov-Gerasimenko, a true Kuiper belt comet as judged from its D/H in water, Science Express, 2014 [3] Hässig, M. et al.: Time variability and heterogeneity in the coma of 67P/Churyumov-Gerasimenko, Science, in press, 2015

Early Evolution of Comet 67P Studied with the RPC-LAP onboard Rosetta

NASA Astrophysics Data System (ADS)

Miloch, W. J.; Yang, L.; Paulsson, J. J.; Wedlund, C. S.; Odelstad, E.; Edberg, N. J. T.; Koenders, C.; Eriksson, A.

2016-12-01

In-situ measurements within the Rosetta mission allow for studies of the cometary environment at different stages of cometary evolution. The Rosetta Plasma Consortium (RPC) is a set of five instruments on board the spacecraft that specialise in the measurements of plasma environment of comet 67P. One of the instruments is RPC-LAP, which consists of two Langmuir Probes and can measure the density, temperature, and flow speed of the plasma in the vicinity of the comet. At the early stage of the Rosetta mission, when the spacecraft is far from the nucleus of comet 67P, the ion part of the current-voltage characteristics of RPC-LAP1 is dominated by the photoemission current, which surpasses the currents from the dilute solar wind plasma. As Rosetta starts orbiting around the nucleus in September 2014, LAP1 picks up signatures of local plasma density enhancements corresponding to variations of water-group ions observed in the vicinity of the comet. With the help of current-voltage characteristics and the spacecraft potential, we identify and characterise in space and time the entering of this coma-dominated, high-density plasma region. This high-density region is observed at the northern hemisphere of the comet during early activity. The transition manifests as a steep gradient in the density with respect to the distance to the comet nucleus. We discuss these RPC-LAP results together with the corresponding measurements by other instruments to provide a comprehensive picture of the transition. We show that the early cometary plasma can be seen as composed of two distinct regions: an outer region characterised by solar wind plasma and small quantities of pickup ions, and an inner region with enhanced plasma densities.

Scientific Benchmarks for Guiding Macromolecular Energy Function Improvement

PubMed Central

Leaver-Fay, Andrew; O’Meara, Matthew J.; Tyka, Mike; Jacak, Ron; Song, Yifan; Kellogg, Elizabeth H.; Thompson, James; Davis, Ian W.; Pache, Roland A.; Lyskov, Sergey; Gray, Jeffrey J.; Kortemme, Tanja; Richardson, Jane S.; Havranek, James J.; Snoeyink, Jack; Baker, David; Kuhlman, Brian

2013-01-01

Accurate energy functions are critical to macromolecular modeling and design. We describe new tools for identifying inaccuracies in energy functions and guiding their improvement, and illustrate the application of these tools to improvement of the Rosetta energy function. The feature analysis tool identifies discrepancies between structures deposited in the PDB and low energy structures generated by Rosetta; these likely arise from inaccuracies in the energy function. The optE tool optimizes the weights on the different components of the energy function by maximizing the recapitulation of a wide range of experimental observations. We use the tools to examine three proposed modifications to the Rosetta energy function: improving the unfolded state energy model (reference energies), using bicubic spline interpolation to generate knowledge based torisonal potentials, and incorporating the recently developed Dunbrack 2010 rotamer library (Shapovalov and Dunbrack, 2011). PMID:23422428

Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules

PubMed Central

Leaver-Fay, Andrew; Tyka, Michael; Lewis, Steven M.; Lange, Oliver F.; Thompson, James; Jacak, Ron; Kaufman, Kristian; Renfrew, P. Douglas; Smith, Colin A.; Sheffler, Will; Davis, Ian W.; Cooper, Seth; Treuille, Adrien; Mandell, Daniel J.; Richter, Florian; Ban, Yih-En Andrew; Fleishman, Sarel J.; Corn, Jacob E.; Kim, David E.; Lyskov, Sergey; Berrondo, Monica; Mentzer, Stuart; Popović, Zoran; Havranek, James J.; Karanicolas, John; Das, Rhiju; Meiler, Jens; Kortemme, Tanja; Gray, Jeffrey J.; Kuhlman, Brian; Baker, David; Bradley, Philip

2013-01-01

We have recently completed a full re-architecturing of the Rosetta molecular modeling program, generalizing and expanding its existing functionality. The new architecture enables the rapid prototyping of novel protocols by providing easy to use interfaces to powerful tools for molecular modeling. The source code of this rearchitecturing has been released as Rosetta3 and is freely available for academic use. At the time of its release, it contained 470,000 lines of code. Counting currently unpublished protocols at the time of this writing, the source includes 1,285,000 lines. Its rapid growth is a testament to its ease of use. This document describes the requirements for our new architecture, justifies the design decisions, sketches out central classes, and highlights a few of the common tasks that the new software can perform. PMID:21187238

Primary SWL Is an Efficient and Cost-Effective Treatment for Lower Pole Renal Stones Between 10 and 20 mm in Size: A Large Single Center Study.

PubMed

Chan, Luke H; Good, Daniel W; Laing, Karina; Phipps, Simon; Thomas, Ben G; Keanie, Julian Y; Tolley, David A; Cutress, Mark L

2017-05-01

To assess the clinical features, outcomes, complications, and cost-effectiveness of shockwave lithotripsy (SWL), flexible ureterorenoscopy (FURS), and percutaneous nephrolithotomy (PCNL) in the treatment of lower pole (LP) stones (10-20 mm) in a large tertiary referral center. Consecutive patients treated for solitary LP stones (10-20 mm) between 2008 and 2013 were identified from a prospective database. SWL was used as primary treatment in all cases (following a stone multidisciplinary team assessment), with FURS and PCNL reserved for SWL contraindications, failure, or patient choice. "Success" was defined as stone free and/or clinically insignificant stone fragments (≤3 mm) at 1 and 3 months follow-up. Effect of anatomy on SWL success was determined from using CT images and regression analysis. Average cost per treatment modality (including additional second-line treatments) was calculated for each group using the National Health Service England 2014/15 National Tariff Healthcare Resource Group codes. Two hundred twenty-five patients were included (mean age 54.9; median stone size 12 mm). One hundred ninety-eight (88%), 21 (9.3%), and 6 (2.7%) patients underwent SWL, FURS, and PCNL as primary treatments, respectively, for median stone sizes of 12, 12, and 20 mm. Overall success rates were 82.8%, 76.1%, and 66.7%, respectively (p < 0.05). Sixty-three percent of patients undergoing primary SWL were effectively treated after one session. Anatomical analysis determined infundibulopelvic angle and infundibular length to be significantly different in patients effectively treated with SWL (p = 0.04). The average cost per treatment modality was also significantly lower for SWL (£750) than for FURS (£1261) or PCNL (£2658) (p < 0.01). SWL is both an efficacious and cost-effective primary treatment for patients with solitary LP stones (10-20 mm). The majority of patients can be effectively treated with primary SWL in a dedicated stone center, with the benefits of a short length of stay, low complication, and auxiliary treatment rates. The referral of such patients to high-volume lithotripsy centers with demonstrable outcomes should be given due consideration.

Lessons in modern digital field geology: Open source software, 3D techniques, and the new world of digital mapping

NASA Astrophysics Data System (ADS)

Pavlis, Terry; Hurtado, Jose; Langford, Richard; Serpa, Laura

2014-05-01

Although many geologists refuse to admit it, it is time to put paper-based geologic mapping into the historical archives and move to the full potential of digital mapping techniques. For our group, flat map digital geologic mapping is now a routine operation in both research and instruction. Several software options are available, and basic proficiency with the software can be learned in a few hours of instruction and practice. The first practical field GIS software, ArcPad, remains a viable, stable option on Windows-based systems. However, the vendor seems to be moving away from ArcPad in favor of mobile software solutions that are difficult to implement without GIS specialists. Thus, we have pursued a second software option based on the open source program QGIS. Our QGIS system uses the same shapefile-centric data structure as our ArcPad system, including similar pop-up data entry forms and generic graphics for easy data management in the field. The advantage of QGIS is that the same software runs on virtually all common platforms except iOS, although the Android version remains unstable as of this writing. A third software option we are experimenting with for flat map-based field work is Fieldmove, a derivative of the 3D-capable program Move developed by Midland Valley. Our initial experiments with Fieldmove are positive, particularly with the new, inexpensive (<300Euros) Windows tablets. However, the lack of flexibility in data structure makes for cumbersome workflows when trying to interface our existing shapefile-centric data structures to Move. Nonetheless, in spring 2014 we will experiment with full-3D immersion in the field using the full Move software package in combination with ground based LiDAR and photogrammetry. One new workflow suggested by our initial experiments is that field geologists should consider using photogrammetry software to capture 3D visualizations of key outcrops. This process is now straightforward in several software packages, and it affords a previously unheard of potential for communicating the complexity of key exposures. For example, in studies of metamorphic structures we often search for days to find "Rosetta Stone" outcrops that display key geometric relationships. While conventional photographs rarely can capture the essence of the field exposure, capturing a true 3D representation of the exposure with multiple photos from many orientations can solve this communication problem. As spatial databases evolve these 3D models should be readily importable into the database.

The nature of (sub-)micrometre cometary dust particles detected with MIDAS

NASA Astrophysics Data System (ADS)

Mannel, T.; Bentley, M. S.; Torkar, K.; Jeszenszky, H.; Romstedt, J.; Schmied, R.

2015-10-01

The MIDAS Atomic Force Microscope (AFM) onboard Rosetta collects dust particles and produces three-dimensional images with nano- to micrometre resolution. To date, several tens of particles have been detected, allowing determination of their properties at the smallest scale. The key features will be presented, including the particle size, their fragile character, and their morphology. These findings will be compared with the results of other Rosetta dust experiments.

Preliminary results seen with Rosetta/ROSINA: early cometary activity of 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Gasc, Sebastien; Altwegg, Kathrin; Jäckel, Annette; Rubin, Martin; Tzou, Chia-Yu; Wurz, Peter; Fiethe, Björn; Korth, Axel; Rème, Henri

2014-11-01

On 1 August 2014, the ROSETTA spacecraft approached the comet 67P/Churyumov-Gerasimenko (67P/CG) close enough to start its detailed characterisation. In this phase, the distance between Rosetta and 67P/CG is below 1’000 km, at a heliocentric distance of less than 3.6 AU. The Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) [1] measures the composition of 67P/CG’s atmosphere and ionosphere, and additionally derives the bulk velocity of gas. ROSINA consists of the COmetary Pressure Sensor (COPS) and two mass spectrometers for the analysis of neutral gas and cometary ions in the coma of the comet: the Double Focusing Mass Spectrometer (DFMS) and the Reflectron Time Of Flight mass spectrometer (RTOF). Since beginning of August, the ROSINA sensors are continuously monitoring the density and chemical composition of the coma of 67P/CG. The goal of this work is not only to determine the abundance of major species like CO2, CO, and H2O, but also to analyse the development of the composition as a function of the heliocentric distance. We will present the first mass spectra of RTOF as well as the total density and the molecular composition measurements obtained at 67P/CG.

Rosetta at comet 67P/Churyumov-Gerasimenko: Spacecraft orbit modeling

NASA Astrophysics Data System (ADS)

Hahn, Matthias; Paetzold, Martin; Tellmann, Silvia; Haeusler, Bernd; Andert, Thomas

The Rosetta spacecraft has been successfully launched on 2nd March 2004 to its target comet 67P/Churyumov-Gerasimenko. The science objectives of the Rosetta Radio Science Investiga-tions (RSI) experiment addresses fundamental aspects of cometary science such as the deter-minations of the nucleus mass and bulk density, its size and shape, its gravity field and internal structure, and its perturbed interplanetary orbit. The radio carrier links at X-band (8.4 GHz) and S-band (2.3 GHz) between the Rosetta spacecraft and the Earth will be used for these investigations. The motion of the spacecraft will be perturbed near the comet nucleus. The Doppler frequency shifts of the transmitted radio signals can be used to reconstruct the flown orbit. In order to extract small changes of the Doppler frequency, a prediction of the orbit is needed which includes best known estimates for all forces acting on the spacecraft. These forces are the nucleus gravity field, third body perturbations, the solar radiation pressure, the solar wind pressure, the cometary outgassing, etc. It is then possible to determine iteratively low degree and order harmonic coefficients of the nucleus gravity field or the gas pressure force and the gas production rate from outgassing from the differences between the predicted and the observed frequency shifts.

Interaction of the solar wind with comets: a Rosetta perspective

NASA Astrophysics Data System (ADS)

Glassmeier, Karl-Heinz

2017-05-01

The Rosetta mission provides an unprecedented possibility to study the interaction of comets with the solar wind. As the spacecraft accompanies comet 67P/Churyumov-Gerasimenko from its very low-activity stage through its perihelion phase, the physics of mass loading is witnessed for various activity levels of the nucleus. While observations at other comets provided snapshots of the interaction region and its various plasma boundaries, Rosetta observations allow a detailed study of the temporal evolution of the innermost cometary magnetosphere. Owing to the short passage time of the solar wind through the interaction region, plasma instabilities such as ring-beam and non-gyrotropic instabilities are of less importance during the early life of the magnetosphere. Large-amplitude ultra-low-frequency (ULF) waves, the `singing' of the comet, is probably due to a modified ion Weibel instability. This instability drives a cross-field current of implanted cometary ions unstable. The initial pick-up of these ions causes a major deflection of the solar wind protons. Proton deflection, cross-field current and the instability induce a threefold structure of the innermost interaction region with the characteristic Mach cone and Whistler wings as stationary interaction signatures as well as the ULF waves representing the dynamic aspect of the interaction. This article is part of the themed issue 'Cometary science after Rosetta'.

An Integrated Framework Advancing Membrane Protein Modeling and Design

PubMed Central

Weitzner, Brian D.; Duran, Amanda M.; Tilley, Drew C.; Elazar, Assaf; Gray, Jeffrey J.

2015-01-01

Membrane proteins are critical functional molecules in the human body, constituting more than 30% of open reading frames in the human genome. Unfortunately, a myriad of difficulties in overexpression and reconstitution into membrane mimetics severely limit our ability to determine their structures. Computational tools are therefore instrumental to membrane protein structure prediction, consequently increasing our understanding of membrane protein function and their role in disease. Here, we describe a general framework facilitating membrane protein modeling and design that combines the scientific principles for membrane protein modeling with the flexible software architecture of Rosetta3. This new framework, called RosettaMP, provides a general membrane representation that interfaces with scoring, conformational sampling, and mutation routines that can be easily combined to create new protocols. To demonstrate the capabilities of this implementation, we developed four proof-of-concept applications for (1) prediction of free energy changes upon mutation; (2) high-resolution structural refinement; (3) protein-protein docking; and (4) assembly of symmetric protein complexes, all in the membrane environment. Preliminary data show that these algorithms can produce meaningful scores and structures. The data also suggest needed improvements to both sampling routines and score functions. Importantly, the applications collectively demonstrate the potential of combining the flexible nature of RosettaMP with the power of Rosetta algorithms to facilitate membrane protein modeling and design. PMID:26325167

24-h urine metabolic profile: is it necessary in all kidney stone formers?

PubMed

Abu-Ghanem, Yasmin; Shvero, Asaf; Kleinmann, Nir; Winkler, Harry Z; Zilberman, Dorit E

2018-06-06

A 24-h urine metabolic profile (24-UMP) is an integral part of nephrolithiasis work-up. We aimed to explore whether it can be waived under certain circumstances. We reviewed our prospective registry database of patients seen at our outpatient clinic for nephrolithiasis between the years 2010 and 2017. Data included: gender, age at first stone, body mass index (BMI), self-reported comorbidities and family history of nephrolithiasis. A 24-UMP was obtained from each patient under random diet. The following were recorded: urine volume, urinary levels of sodium, calcium, uric acid, oxalate and citrate. Presence of at least one comorbidity (i.e., hypertension/diabetes/hyperlipidemia) was defined as "associated comorbidities" (AC). Their absence was defined as "no comorbidities" (NC). Subjects were divided into two subgroups: first-time and recurrent stone formers, which were further divided into two subgroups: 1st + AC; 1st + NC; recurrent + AC; recurrent + NC. 24-UMPs have been compared between the four groups. Four hundred and fifty-seven patients were included in the study. In the AC groups, patients demonstrated higher BMI levels (p = 0.001), and were statistically significantly obese (BMI > 30, p = 0.001) and older at first stone event (p = 0.001). First formers, either with AC or NC were more likely to have low urine volume (LUV) compared with recurrent formers (72.5 vs. 59.5%, p = 0.005). In the remaining metabolic abnormalities, no such differences were observed. First-time stone formers, either with or without AC are likely to demonstrate LUV as their primary metabolic abnormality in 24-UMP. Therefore, 24-UMP may be postponed until recurrent stone event.

Use of flexible ureteroscopy in the clinical practice for the treatment of renal stones: results from a large European survey conducted by the EAU Young Academic Urologists-Working Party on Endourology and Urolithiasis.

PubMed

Sanguedolce, F; Liatsikos, E; Verze, P; Hruby, S; Breda, A; Beatty, J D; Knoll, T

2014-08-01

Treatment of renal stones using flexible ureteroscopy (fURS) is increasingly common despite the poor evidence in literature supporting its use and indications. With this study, we wanted to investigate the current use and indication of fURS for the treatment of renal stones in the clinical practice across the European countries. A survey was conducted using an emailed questionnaire consisting of 21 items; 2,894 recipients were selected via the EAU membership database. The questionnaires were collected through the SurveyMonkey system and the data were processed with the SPSS statistical package. Frequencies, cross tabs and Pearson correlation coefficients were applied as appropriate. 1,168 questionnaires were collected (response rate 40.4%). fURS was performed in 72.9% of the respondents' institutions, and 54.2% of the respondents were performing the procedure. For 95% of the users, fURS was considered first-line treatment, for stone of lower pole stone (45.9%) and <1 cm (44.2%) and 2 cm (43.8%) in size. The ureteral access sheaths were used routinely by more than 70% of the respondents. Lower pole stone repositioning technique was routinely performed by 45.9% of the surgeons. After fragmentation, 47.2% of the responders preferred to retrieve only the bigger fragments. At the end of fURS, lower volume surgeons were more likely to place routinely a double-J stent (p = 0.001). Higher volume surgeons estimated a higher durability of devices, both optical and digital ones (p < 0.001), and were more prone to consider fURS cost-effective when compared to other treatment modalities (p < 0.001). fURS is widely used for the treatment of renal stones and its use and indication can vary according to the age and surgeons' case volume. Higher volume surgeons are more prompt to extend international guidelines indications and to consider the technology cost-effective.

Relationships between enteral nutrition facts and urinary stones in a cohort of pediatric patients in rehabilitation from severe acquired brain injury.

PubMed

Pozzi, Marco; Locatelli, Federica; Galbiati, Sara; Beretta, Elena; Carnovale, Carla; Clementi, Emilio; Strazzer, Sandra

2018-05-14

Urolithiasis affects pediatric patients with severe acquired brain injury, in whom the role of several clinical variables and of the presence and composition of enteral nutrition has not been investigated. Retrospective chart review on 371 pediatric patients with severe acquired brain injury. We used an essential electronic database to check the association between stones and enteral feeding. We then picked at random paper clinical records until we collected 20 and 20 complete records for patients with/without stones, not matched. With that information, we tested the association of stones with: nutrition facts of enteral formulae (sodium, potassium, calcium, magnesium, phosphorus, proteins, vitamin C); bladder dysfunction, urinary infections, catheterisms, tracheostomy, gallstones, way of feeding; blood and urine exams before stones diagnosis; age, type and severity of injury; prior physical activity, relevant drugs. All patients with stones were fed enterally. At univariate statistics they were older, weighed more, received bigger volumes of hydration and nutrition; they had worse GCS, more UTIs and they alone received catheterisms; their nutrition mixes were richer in sodium. In multivariate logistic regression for stone development, UTIs (OR 11.4, 95% C.I. 1.6-83.4) and higher sodium nutrition content (OR 7.5, 95% C.I. 1.6-34.3) were risk factors; higher GCS (OR 0.66, 95% C.I. 0.43-0.99) and higher calcium nutrition content (OR 0.14, 95% C.I. 0.03-0.73) were protective factors. Besides known risk factors for urolithiasis, including UTIs, catheterisms, worse neurological states, also enteral nutrition was a risk factor, particularly with higher sodium and lower calcium contents. Future studies should test the effect of different sodium/calcium nutrition contents on lithogenesis. Copyright © 2018 Elsevier Ltd and European Society for Clinical Nutrition and Metabolism. All rights reserved.

A microelectronics approach for the ROSETTA surface science package

NASA Technical Reports Server (NTRS)

Sandau, Rainer (Editor); Alkalaj, Leon

1996-01-01

In relation to the Rosetta surface science package, the benefits of the application of advanced microelectronics packaging technologies and other output from the Mars environmental survey (MESUR) integrated microelectronics study are reported on. The surface science package will be designed to operate for tens of hours. Its limited mass and power consumption make necessary a highly integrated design with all the instruments and subunits operated from a centralized control and information management subsystem.

Outbursts and diamagnetic cavities in comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Voelzke, M. R.

2018-03-01

On 2014 August 06 the Rosetta spacecraft arrived at comet 67P/Churyumov-Gerasimenko. Since then, the spacecraft accompanied the comet on its journey around the Sun (Glassmeier et al. 2007), until the end of the mission on 2016 September 30. This work tries to understand the possible connections between the 665 reported diamagnetic regions (Goetz et al. 2016), detected from April 2015 to February 2016 around the comet 67P/Churyumov-Gerasimenko, with the fluxgate magnetometer of the Rosetta Plasma Consortium (RPC-MAG), when the heliocentric distance of the comet from the sun varied from 1.8 to 2.4 AU and the 34 reported outbursts (Vincent et al. 2016), detected from July to September 2015, with the Optical, Spectroscopic, and Infrared Remote Imaging System (OSIRIS) cameras, when the ESA's Rosetta spacecraft changed the cometocentric distance from 155 to 817 km.

Four-fluid MHD Simulations of the Plasma and Neutral Gas Environment of Comet Churyumov-Gerasimenko Near Perihelio

NASA Astrophysics Data System (ADS)

Huang, Z.; Toth, G.; Gombosi, T. I.; Jia, X.; Rubin, M.; Hansen, K. C.; Fougere, N.; Bieler, A. M.; Shou, Y.; Altwegg, K.; Combi, M. R.; Tenishev, V.

2015-12-01

The neutral and plasma environment is critical in understanding the interaction of comet Churyumov-Gerasimenko (CG), the target of the Rosetta mission, and the solar wind. To serve this need and support the Rosetta mission, we develop a 3-D four fluid model, which is based on BATS-R-US within the SWMF (Space Weather Modeling Framework) that solves the governing multi-fluid MHD equations and the Euler equations for the neutral gas fluid. These equations describe the behavior and interactions of the cometary heavy ions, the solar wind protons, the electrons, and the neutrals. This model incorporates different mass loading processes, including photo and electron impact ionization, charge exchange, dissociative ion-electron recombination, and collisional interactions between different fluids. We simulate the near nucleus plasma and neutral gas environment near perihelion with a realistic shape model of CG and compare our simulation results with Rosetta observations.

E-type asteroid (2867) Steins as imaged by OSIRIS on board Rosetta.

PubMed

Keller, H U; Barbieri, C; Koschny, D; Lamy, P; Rickman, H; Rodrigo, R; Sierks, H; A'Hearn, M F; Angrilli, F; Barucci, M A; Bertaux, J-L; Cremonese, G; Da Deppo, V; Davidsson, B; De Cecco, M; Debei, S; Fornasier, S; Fulle, M; Groussin, O; Gutierrez, P J; Hviid, S F; Ip, W-H; Jorda, L; Knollenberg, J; Kramm, J R; Kührt, E; Küppers, M; Lara, L-M; Lazzarin, M; Lopez Moreno, J; Marzari, F; Michalik, H; Naletto, G; Sabau, L; Thomas, N; Wenzel, K-P; Bertini, I; Besse, S; Ferri, F; Kaasalainen, M; Lowry, S; Marchi, S; Mottola, S; Sabolo, W; Schröder, S E; Spjuth, S; Vernazza, P

2010-01-08

The European Space Agency's Rosetta mission encountered the main-belt asteroid (2867) Steins while on its way to rendezvous with comet 67P/Churyumov-Gerasimenko. Images taken with the OSIRIS (optical, spectroscopic, and infrared remote( )imaging system) cameras on board Rosetta show that Steins is an oblate body with an effective spherical diameter of 5.3 kilometers. Its surface does not show color variations. The morphology of Steins is dominated by linear faults and a large 2.1-kilometer-diameter crater near its south pole. Crater counts reveal a distinct lack of small craters. Steins is not solid rock but a rubble pile and has a conical appearance that is probably the result of reshaping due to Yarkovsky-O'Keefe-Radzievskii-Paddack (YORP) spin-up. The OSIRIS images constitute direct evidence for the YORP effect on a main-belt asteroid.

Different Operating Modes of the Rosetta's Ion Composition Analyzer and Its Virtual Counterpart

NASA Astrophysics Data System (ADS)

Pospieszyński, R.

2009-12-01

The Ion Composition Analyzer (ICA) is a part of the Rosetta Plasma Consortium (RPC) which is on board the Rosetta space probe heading for the comet 67/P Churyumov-Gerasimenko. It is scheduled to reach the comet in year 2014. In order to reduce telemetry the ICA instrument has a number of data reduction modes (sampling modes). The effects of these different modes are investigated and a plan on how to best operate the instrument when in orbit around the comet will be prepared. In order to investigate all of the cases a virtual instrument is being prepared. The virtual instrument can be operated in different modes just as the ``real'' one. The work with sampling will be to calculate what particles are coming from each direction we are looking in, based on the ISSI Comet Model, and then see how much information we loose by too sparse sampling and incomplete spatial coverage.

The Strategy and Implementation of the Rosetta Communication Campaign

NASA Astrophysics Data System (ADS)

Bauer, M.; McCaughrean, M.; Landeau-Constantin, J.

2016-03-01

The communication campaign for Rosetta has been the biggest success in the history of European Space Agency outreach, resulting in global awareness for the agency. The mission itself is an extraordinary operational and scientific success, but communicating only the operational and scientific firsts would likely not have brought the Rosetta orbiter and Philae lander to the attention of so many people, and would not have made the mission part of people's lives across the globe. The additional impact brought to the mission through the communication campaign was based on a strategic approach focusing on: real-time release of information with maximum transparency; direct real-time access for media and social media; adding a human dimension to the story; and communicating the risks openly in order to manage expectations. In this article we describe our overall strategy, illustrate its implementation, and provide the framework for subsequent articles in this journal highlighting specific aspects of the campaign in more detail.

E-Type Asteroid (2867) Steins as Imaged by OSIRIS on Board Rosetta

NASA Astrophysics Data System (ADS)

Keller, H. U.; Barbieri, C.; Koschny, D.; Lamy, P.; Rickman, H.; Rodrigo, R.; Sierks, H.; A'Hearn, M. F.; Angrilli, F.; Barucci, M. A.; Bertaux, J.-L.; Cremonese, G.; Da Deppo, V.; Davidsson, B.; De Cecco, M.; Debei, S.; Fornasier, S.; Fulle, M.; Groussin, O.; Gutierrez, P. J.; Hviid, S. F.; Ip, W.-H.; Jorda, L.; Knollenberg, J.; Kramm, J. R.; Kührt, E.; Küppers, M.; Lara, L.-M.; Lazzarin, M.; Moreno, J. Lopez; Marzari, F.; Michalik, H.; Naletto, G.; Sabau, L.; Thomas, N.; Wenzel, K.-P.; Bertini, I.; Besse, S.; Ferri, F.; Kaasalainen, M.; Lowry, S.; Marchi, S.; Mottola, S.; Sabolo, W.; Schröder, S. E.; Spjuth, S.; Vernazza, P.

2010-01-01

The European Space Agency’s Rosetta mission encountered the main-belt asteroid (2867) Steins while on its way to rendezvous with comet 67P/Churyumov-Gerasimenko. Images taken with the OSIRIS (optical, spectroscopic, and infrared remote imaging system) cameras on board Rosetta show that Steins is an oblate body with an effective spherical diameter of 5.3 kilometers. Its surface does not show color variations. The morphology of Steins is dominated by linear faults and a large 2.1-kilometer-diameter crater near its south pole. Crater counts reveal a distinct lack of small craters. Steins is not solid rock but a rubble pile and has a conical appearance that is probably the result of reshaping due to Yarkovsky-O’Keefe-Radzievskii-Paddack (YORP) spin-up. The OSIRIS images constitute direct evidence for the YORP effect on a main-belt asteroid.

ESO's VLT Helps ESA's Rosetta Spacecraft Prepare to Ride on a Cosmic Bullet

NASA Astrophysics Data System (ADS)

2002-02-01

New Images of Comet Wirtanen's Nucleus [1] Summary New images of Comet Wirtanen's 1-km 'dirty snowball' nucleus have been obtained with the ESO Very Large Telescope at Paranal (Chile). They show this object at a distance of approx. 435 million km from the Sun, about the same as when the Rosetta spacecraft of the European Space Agency (ESA) arrives in 2011. The new observations indicate that the comet has a very low degree of activity at this point in its orbit - almost no material is seen around the nucleus. This means that there will not be so much dust near the nucleus as to make the planned landing dramatically difficult. PR Photo 06a/02 : The Nucleus of Comet Wirtanen (composite photo). PR Photo 06b/02 : Comet Wirtanen's motion in the sky (animated). A distant target ESO PR Photo 06a/02 ESO PR Photo 06a/02 [Preview - JPEG: 400 x 445 pix - 120k] [Normal - JPEG: 800 x 890 pix - 1.1M] ESO PR Photo 06b/02 ESO PR Photo 06b/02 [Animated GIF: 400 x 420 pix - 312k] Caption : PR Photo 06a/02 shows a (false-colour) composite image of the nucleus of Comet Wirtanen (the point of light at the centre), recorded on December 9, 2001, with the FORS2 multi-mode instrument at the 8.2-m VLT YEPUN Unit Telescope. It is based on four exposures and since the telescope was set to track the motion of the comet in the sky, the images of stars in the field are seen as four consecutive trails. The measured brightness and the fact that the image of the comet's 'dirty snowball' nucleus is almost star-like indicates that it is surrounded by a very small amount of gas or dust. The diameter of the nucleus is about 1 km and the distance to the comet from the Earth was approx. 534 million km. In PR Photo 06b/02 , the four exposures have been combined to show the motion of the comet during the four exposures. Technical information about the photos is available below. Chase a fast-moving comet, land on it and 'ride' it while it speeds up towards the Sun: not the script of a science-fiction movie, but the very real task of ESA's Rosetta spacecraft. New observations with the ESO Very Large Telescope (VLT) provide vital information about Comet Wirtanen - Rosetta's target - to help ESA reduce uncertainties in the mission, one of the most difficult ever to be performed. Every 5.5 years Comet Wirtanen completes an orbit around the Sun. Wirtanen has been seen during several apparitions since its discovery in 1948, but only recently have astronomers obtained detailed observations that have allowed them to estimate the comet's size and behaviour, cf. ESO PR Photos 27a-b/99. The most recent of these observations was performed in December 2001 with the ESO VLT at the Paranal Observatory in Northern Chile, cf. PR Photos 06a-b/02 , reproduced here. As a result of these observations ESA will be able to refine plans for its Rosetta mission. Good news for Rosetta Rosetta will be launched next year and it will reach Comet Wirtanen in 2011. By that time the comet will be nearly as far from the Sun as Jupiter, charging headlong towards the inner Solar System at speeds of up to 135,000 km/h. To get there and to be able to match the comet's orbit, Rosetta will need to be accelerated by several planetary swing-bys, after which the spacecraft - following a series of difficult manoeuvres - will get close to the comet, enter into orbit around it and release a lander from a height of about 1 km. The VLT observations were planned specifically to investigate the 'activity' of Wirtanen at about the same solar distance as at the time of the landing manoeuvres . Because of this timing requirement, they had to be carried out at a certain moment - unfortunately, when the comet was low in the twilight evening sky and descending rapidly towards the western horizon. However, even though the exposures therefore had to be quite short, the VLT with its superb light-gathering capability and opto-mechanical perfection was still able to produce excellent images of this rather faint, moving object (about 6 million times fainter than what can be perceived with the unaided eye). These observations have now confirmed that - at the same distance from the Sun at which the landing will take place (about 450 million km from the Sun) - the activity on Wirtanen is very low, cf. PR Photo 06a/02 . This is very good news for the mission, because it means that there will not be so much dust near the nucleus as to make the landing dramatically difficult . Landing on a 1-km snowball Cometary nuclei are small frozen bodies made of ice and dust ('dirty snowballs'). When they get close to the Sun the heat causes ices on the surface to 'evaporate'. Gas and dust grains are ejected into the surrounding space forming the comet's atmosphere (coma) and the tail. In addition to dropping a lander on Wirtanen's nucleus for detailed in-situ observations, Rosetta's task is to investigate the evolution of the comet on its way to the Sun: in fact, Rosetta will keep orbiting around Wirtanen up to the end of the mission in July 2013, at which time the comet is at its closest approach to the Sun, at about 160 million km from it. These and earlier VLT observations have also provided Rosetta mission planners with an accurate measurement of their target's size: Wirtanen's nucleus is only 1.2 km in diameter, a true cosmic bullet . "Rosetta is certainly a very challenging space mission. No one has ever tried to land on a comet before," says Gerhard Schwehm , Rosetta's Project Scientist. "We need to learn as much as possible about our target. The new VLT data will allow us to improve our models and make decisions once we get there." "It is a pleasure to help our colleagues at ESA", says ESO astronomer and comet specialist Hermann Boehnhardt . "We will continue to keep an eye on this comet, in particular when Rosetta is approaching its target. We can then provide the spacecraft controllers and the astronomers with very useful, regular updates, e.g., about the 'cometary weather' at the time of arrival." More about Rosetta Rosetta's prime scientific goal is to unravel the origin of the Solar System. The chemical composition of comets is known to reflect that of the primordial nebula that gave birth to the Solar System - in the planets, that primeval material has gone through complex processing, but not in the comets. Therefore, Rosetta will allow scientists to look back 4.6 billion years, to an epoch when the Solar System formed. Previous studies by ESA's Giotto spacecraft and by ground-based observatories have shown that comets contain complex organic molecules - compounds that are rich in carbon, hydrogen, oxygen and nitrogen. Intriguingly, these are the elements which make up nucleic acids and amino acids, essential ingredients for life as we know it. Did life on Earth begin with the help of comet seeding? Rosetta may help us to find the answer to this fundamental question. Rosetta carries 21 experiments in total. These are provided by scientific consortia from institutes across Europe and the United States. The Wirtanen observations by the VLT fall into a tradition of fruitful collaboration between the European Space Agency (ESA) and the European Southern Observatory (ESO). The two organizations, both members of the EIROFORUM collaboration ( ESO PR 12/01 ), are already combining their efforts in several strategic areas, in order to facilitate the synergy between space and ground facilities, where mutual sharing of technology and procedures can result in substantial gains and savings.

Death on a strange isle: the mortality of the stone workers of Purbeck in the nineteenth century.

PubMed

Hinde, Andrew; Edgar, Michael

2010-01-01

This paper analyses the mortality of a group of rural workers in an extractive industry, the stone quarriers of the Isle of Purbeck in the southern English county of Dorset. The analysis uses a database created by nominal record linkage of the census enumerators' books and the Church of England baptism and burial registers to estimate age-specific death rates at all ages for males and females, and hence statistics such as the expectation of life at birth. The results are compared with mortality statistics published by the Registrar General of England and Wales (on the basis of the civil registers of deaths) for the registration district of Wareham, in which Purbeck is situated. The stone quarriers had heavier mortality levels than the rest of the population of Purbeck. Closer inspection, however, reveals that their high mortality was confined to males, and was almost entirely due to especially high mortality among boys aged less than five years. In contrast to the experience of coal and metal ore miners, adult male mortality among stone workers was no higher than that among the general population. The final section of the paper considers possible explanations for these results, and suggests that excess mortality among boys in Purbeck from lung diseases might have been responsible.

GIADA onboard Rosetta characterising comet 67/PChuryumov-Gerasimenko dust environment inbound to and outbound from perihelion.

NASA Astrophysics Data System (ADS)

Della Corte, Vincenzo; Rotundi, Alessandra; Fulle, Marco

2016-07-01

GIADA (Grain Impact Analyzer and Dust Accumulator) is an in-situ instrument onboard Rosetta monitoring the dust environment of comet 67P/Churyumov-Gerasimenko. GIADA is composed of 3 sub-systems: 1) the Grain Detection System, based on particle detection through light scattering; 2) the Impact Sensor, measuring particle momentum; 3) the Micro-Balances System, constituted of 5 quartz crystal microbalances, providing cumulated dust from different directions. From the combination of the measurements performed by the three subsystems we retrieve: the number, the mass, the momentum, the speed of individual dust particles and the cumulative dust flux emitted from the comet nucleus. We will present the coma dust environment as observed by GIADA during the pre-landing and escort phases of the Rosetta space mission. GIADA was able to detect temporal and spatial variation of dust density distribution and to disentangle different types of impacting dust particles. Specific high dust spatial density sectors of the coma have been identified and their evolution with respect to the heliocentric distance was studied. From August 2014 to December 2015, i.e. inbound, at and outbound perihelion, Rosetta performed different trajectories around the nucleus and flybys with different close approach distances, different coordinates of the sub-spacecraft point and different observing geometry (phase angle), allowed GIADA to characterize the dust environment within the 67P/C-G coma and its temporal variation. Acknowledgements. GIADA was built by a consortium led by the Univ. Napoli "Parthenope" & INAF- Oss. Astr. Capodimonte, IT, in collaboration with the Inst. de Astrofisica de Andalucia, ES, Selex-ES s.p.a. and SENER. GIADA is presently managed & operated by Ist. di Astrofisica e Planetologia Spaziali-INAF, IT. GIADA was funded and managed by the Agenzia Spaziale Italiana, IT, with a support of the Spanish Ministry of Education and Science MEC, ES. GIADA was developed from a PI proposal supported by the University of Kent; sci. & tech. contribution given by CISAS, IT, Lab. d'Astr. Spat., FR, and Institutions from UK, IT, FR, DE and USA. We thank the RSGS/ESAC, RMOC/ESOC & Rosetta Project/ESTEC for their outstanding work. Science support provided by NASA through the US Rosetta Project managed by JPL/California Institute of Technology. GIADA calibrated data will be available through the ESA's PSA web site.

Spectral methods to detect cometary minerals with OSIRIS on board Rosetta

NASA Astrophysics Data System (ADS)

Oklay, N.; Vincent, J.-B.; Sierks, H.

2013-09-01

Comet 67P/Churyumov-Gerasimenko is going to be observed by the OSIRIS scientific imager (Keller et al. 2007) on board ESA's spacecraft Rosetta in the wavelength range of 250-1000 nm with a combination of 12 filters for the narrow angle camera (NAC) and 14 combination of 12 filters for the narrow angle camera (NAC) and 14 filters in the wavelength range of 240-720 nm for the wide angle camera (WAC). NAC filters are suitable to surface composition studies, while WAC filters are designed for gas and radical emission studies. In order to investigate the composition of the comet surface from the observed images, we need to understand how to detect different minerals and which compositional information can be derived from the NAC filters. Therefore, the most common cometary silicates e.g. enstatite, forsterite are investigated with two hydrated silicates (serpentine and smectite) for the determina- tion of the spectral methods. Laboratory data of those selected minerals are collected from RELAB database (http://www.planetary.brown.edu/relabdocs/relab.htm) and absolute spectra of the minerals observed by OSIRIS NAC filters are calculated. Due to the limited spectral range of the laboratory data, Far-UV and Neutral density filters of NAC are excluded from this analysis. Considered NAC filters in this study are represented in Table 1 and the number of collected laboratory data are presented in Table 2. Detection and separation of the minerals will not only allow us to study the surface composition but also to study observed composition changes due to the cometary activity during the mission.

[Expression in Escherichia coli of the gspd(l) gene of the type II secretion system in Leptospira borgpetersenii serovariety hardjo].

PubMed

Reyes, Ernesto Armando Rodríguez; Cullen, Paul; Bulach, Dieter; Adler, Ben; Haake, David; de la Peña-Moctezuma, Alejandro

2005-01-01

A fragment of 1.539 pb of the gene homologous to gspD of Hardjobovis was clonated in the pET28a vector and it was transformed into E. coli C43 and Rosetta strains. The sequence of GspD(L) showed 46 % of similitude with E. coli GspD secretin. The expression of recombinant GspD(L) was obtained in Rosetta strain.

Ion composition at comet 67P near perihelion: Rosetta/ROSINA measurements and modeling

NASA Astrophysics Data System (ADS)

Beth, Arnaud; Altwegg, Kathrin; Balsiger, Hans; Berthelier, Jean-Jacques; Calmonte, Ursina; Combi, Michael R.; De Keyser, Johan; Dhooghe, Frederik; Fiethe, Björn; Fuselier, Stephen; Galand, Marina; Gasc, Sébastien; Gombosi, T. I.; Hansen, Kenneth C.; Hässig, Myrtha; Héritier, Kévin; Kopp, Ernest; Le Roy, Léna; Peroy, Solène; Rubin, Martin; Sémon, Thierry; Tzou, Chia-Yu; Vigren, Erik

2016-10-01

On August 13th, 2015, comet 67P/Churyumov-Gerasimenko reached its perihelion at 1.24 AU, a milestone for its cometary activity observed by the European Space Agency's Rosetta spacecraft which arrived in August 2014. The Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA)/Comet Pressure Sensor (COPS) instrument onboard Rosetta measured local outgassing rates over 1028 molecules.s-1 in summer 2015. In the meantime, the ROSINA/Double Focusing Mass Spectrometer (DFMS) instrument measured the ion composition in the coma which was expected to be more diversified than during the early phase of the mission. Indeed, the increase in the cometary activity is expected to trigger new chemical pathways, yielding the formation of new cometary ions, other than the major water ions observed at larger heliocentric distances. Such new ion species can be produced from minor neutral species, such as those with proton affinity higher than that of water. This includes NH4+ whose detection has been recently reported (Beth et al., 2016).In this study, we propose to investigate other ion species during the perihelion period by:- analysing DFMS data to find any signature of substantial ion species,- modeling the ionosphere of 67P by driving the model with the neutral densities measured by DFMS and COPS to support or constrain the absence or the presence of these ion species,- discussing any discrepancy between observations and simulations.

Touch the comet! Testing of the "Rosetta's Comet Touchdown" educational kit in the Széchenyi István High School, Sopron, Hungary.

NASA Astrophysics Data System (ADS)

Lang, A.; Wesely, N.; Soós, B.; Sléber, B.; Majnovics, Z.; Ettingshausen, M.; Bodnár, L.; Németh, A.; Roos, M.

2011-10-01

In our school works a course in robotics where students build and program robots from a LEGO MINDSTORMS kit. We took part in the Hunveyor- Husar project with a Mars rover based on a rover model kit, of which the operating arms are built out of LEGO and controlled by an MINDSTORMS NXT computer. We presented our rover on the EPSC in Rome last September 2010 We presented our rover on the EPSC in Rome in September 2010. At that same conference the "Rosetta's Comet Touchdown" educational kit was officially presented. We were very interested and in conversation with the people from the project, we agreed that our school in Sopron would also participate in testing the kit. . The kit comes with a set of Interdisciplinary Activity Sheets (IAS, downloadable from Vimeo channel1) and a great feature is that the proposed activities in the IAS cover three areas: science, art/history and engineering. The 31 students from our class divided up in groups and each group chose a different topic: History of comets in Hungarian culture; Designing a T-shirt; Research on comets; Hungary in the Rosetta mission; Animation of Rosetta's orbit in space; building a LEGO MINDSTORM model; a film was made of the activities . In this presentation we report in particular the activities of the LEGO building team.

67P/Churyumov-Gerasimenko: Activity between March and June 2014 as observed from Rosetta/OSIRIS

NASA Astrophysics Data System (ADS)

Tubiana, C.; Snodgrass, C.; Bertini, I.; Mottola, S.; Vincent, J.-B.; Lara, L.; Fornasier, S.; Knollenberg, J.; Thomas, N.; Fulle, M.; Agarwal, J.; Bodewits, D.; Ferri, F.; Güttler, C.; Gutierrez, P. J.; La Forgia, F.; Lowry, S.; Magrin, S.; Oklay, N.; Pajola, M.; Rodrigo, R.; Sierks, H.; A'Hearn, M. F.; Angrilli, F.; Barbieri, C.; Barucci, M. A.; Bertaux, J.-L.; Cremonese, G.; Da Deppo, V.; Davidsson, B.; De Cecco, M.; Debei, S.; Groussin, O.; Hviid, S. F.; Ip, W.; Jorda, L.; Keller, H. U.; Koschny, D.; Kramm, R.; Kührt, E.; Küppers, M.; Lazzarin, M.; Lamy, P. L.; Lopez Moreno, J. J.; Marzari, F.; Michalik, H.; Naletto, G.; Rickman, H.; Sabau, L.; Wenzel, K.-P.

2015-01-01

Aims: 67P/Churyumov-Gerasimenko is the target comet of the ESA's Rosetta mission. After commissioning at the end of March 2014, the Optical, Spectroscopic, and Infrared Remote Imaging System (OSIRIS) onboard Rosetta, started imaging the comet and its dust environment to investigate how they change and evolve while approaching the Sun. Methods: We focused our work on Narrow Angle Camera (NAC) orange images and Wide Angle Camera (WAC) red and visible-610 images acquired between 2014 March 23 and June 24 when the nucleus of 67P was unresolved and moving from approximately 4.3 AU to 3.8 AU inbound. During this period the 67P - Rosetta distance decreased from 5 million to 120 thousand km. Results: Through aperture photometry, we investigated how the comet brightness varies with heliocentric distance. 67P was likely already weakly active at the end of March 2014, with excess flux above that expected for the nucleus. The comet's brightness was mostly constant during the three months of approach observations, apart from one outburst that occurred around April 30 and a second increase in flux after June 20. Coma was resolved in the profiles from mid-April. Analysis of the coma morphology suggests that most of the activity comes from a source towards the celestial north pole of the comet, but the outburst that occurred on April 30 released material in a different direction.

Structure and Formation of Comets: Updates from Post-Rosetta Solid Fraction Analyses

NASA Astrophysics Data System (ADS)

Levasseur-Regourd, A. C.; Bentley, M. S.; Kofman, W. W.; Brouet, Y.; Ciarletti, V.; Hadamcik, E.; Herique, A.; Lasue, J.; Mannel, T.; Schmied, R.

2016-12-01

The combination of investigations of 67P/C-G by Rosetta, theoretical and experimental studies, and remote observations allowed unprecedented insight into the structure and formation of comets. Rosetta mission has provided ground-truth for the low-density and high porosity of the nucleus, without heterogeneities larger than a few meters in its small lobe [1,2]. Further studies related to CONSERT experiment now suggest that the porosity increases inside the nucleus [3,4]. Rosetta has also provided ground-truth for the aggregated structure of dust particles within a wide range of sizes in the inner coma [e.g. 5-7]. Such discoveries confirm previous interpretations of remote observations of solar light scattered by dust in cometary comae. Differences in structure between the two parts of the nucleus, strongly suspected from previous high-resolution images of the surface [8] and possibly suggested from some remote observations in fragmenting sub-nuclei [9], might be pointed out from data obtained shortly before Rosetta controlled descent in September 2016. Further analyses by MIDAS of dust particles morphology at submicron-sizes [7,10], as well as compilations of remote observations of solar light scattered by 67P/C-G [11], are presently taking place. We will discuss how such results could lead to a better understanding of dust growth processes during the formation, specifically of 67P/C-G, and more generally, thanks to the link now provided between structural properties of dust and remote polarimetric observations, of comet's nuclei in the early Solar System. References. 1 Kofman et al. Science 2015. 2 Pätzold et al. Nature 2016. 3 Ciarletti et al. A&A 2015. 4 Brouet et al. MNRAS 2016 (under revision). 5. Rotundi et al. Science 2015. 6 Langevin et al. Icarus 2016. 7 Bentley et al. Nature 2016. 8 Massironi et al. Nature 2016. 9 Hadamcik et al. A&A 2016. 10. Mannel et al. Leiden symposium 2016. 11 Hadamcik et al. Leiden symposium 2016.

Inventory of Volatiles in the Coma of Comet 67P/Churyumov-Gerasimenko from Rosetta ROSINA - An Overview of First Results

NASA Astrophysics Data System (ADS)

Altwegg, K.; Rubin, M.; Balsiger, H. R.; Jäckel, A.; Le Roy, L.; Wurz, P.; Gasc, S.; Calmonte, U.; Tzou, C. Y.; Mall, U. A.; Fiethe, B.; De Keyser, J. M.; Berthelier, J. J.; Reme, H.; Gombosi, T. I.; Fuselier, S.

2014-12-01

The European Space Agency's Rosetta spacecraft is now close in a bound orbit around comet 67P/Churyumov-Gerasimenko (67P/C-G). On board is the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) instrument suite. ROSINA consists of two mass spectrometers, the Double Focusing Mass Spectrometer (DFMS) and the Reflectron-type Time-Of-Flight (RTOF), as well as the COmet Pressure Sensor (COPS). ROSINA is designed to detect and monitor the neutral gas and thermal plasma environment in the comet's coma by in situ investigation. The two mass spectrometers have high dynamic ranges and complement each other with high mass resolution (DFMS) and high time resolution and large mass range (RTOF). Especially the unprecedented sensitivity and mass resolution of DFMS together with the large mass range of RTOF will allow determining precisely light species (e.g. isotopologues) as well as detecting heavy organics. The pressure sensor COPS is capable to derive total gas densities, velocities, and temperatures. To date only limited data for the composition of cometary comae at heliocentric distances of more than 2.5 AU are available. The set is dominated by CO and daughter species of water from bright comets originating in the Oort cloud. While some molecules can be detected from far by remote sensing (e.g. CO) other molecules are much more difficult to observe from ground (e.g. CO2). The Rosetta mission presents a unique opportunity to directly probe the parent species in the thin cometary atmosphere of a Kuiper-belt object at more than 2.5 AU from the Sun and relate it to ground-based observations. Distances that far from the Sun are of particular interest as the comet's activity transitions from being super volatiles dominated to being water dominated. We will report on the first measurements of the volatile inventory obtained from ROSINA observations as Rosetta is following comet 67P/C-G in close vicinity.

Mapping Ross Ice Shelf with ROSETTA-Ice airborne laser altimetry

NASA Astrophysics Data System (ADS)

Becker, M. K.; Fricker, H. A.; Padman, L.; Bell, R. E.; Siegfried, M. R.; Dieck, C. C. M.

2017-12-01

The Ross Ocean and ice Shelf Environment and Tectonic setting Through Aerogeophysical surveys and modeling (ROSETTA-Ice) project combines airborne glaciological, geological, and oceanographic observations to enhance our understanding of the history and dynamics of the large ( 500,000 square km) Ross Ice Shelf (RIS). Here, we focus on the Light Detection And Ranging (LiDAR) data collected in 2015 and 2016. This data set represents a significant advance in resolution: Whereas the last attempt to systematically map RIS (the surface-based RIGGS program in the 1970s) was at 55 km grid spacing, the ROSETTA-Ice grid has 10-20 km line spacing and much higher along-track resolution. We discuss two different strategies for processing the raw LiDAR data: one that requires proprietary software (Riegl's RiPROCESS package), and one that employs open-source programs and libraries. With the processed elevation data, we are able to resolve fine-scale ice-shelf features such as the "rampart-moat" ice-front morphology, which has previously been observed on and modeled for icebergs. This feature is also visible in the ROSETTA-Ice shallow-ice radar data; comparing the laser data with radargrams provides insight into the processes leading to their formation. Near-surface firn state and total firn air content can also be investigated through combined analysis of laser altimetry and radar data. By performing similar analyses with data from the radar altimeter aboard CryoSat-2, we demonstrate the utility of the ROSETTA-Ice LiDAR data set in satellite validation efforts. The incorporation of the LiDAR data from the third and final field season (December 2017) will allow us to construct a DEM and an ice thickness map of RIS for the austral summers of 2015-2017. These products will be used to validate and extend observations of height changes from satellite radar and laser altimetry, as well as to update regional models of ocean circulation and ice dynamics.

Getting together in deep space - The Rosetta space probe's long trek to Comet 67/P Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

2004-02-01

The countdown to Rosetta’s rendezvous in space began on 1 March 1997. At the end of February 2004, seven years and not a few headaches later, the European Space Agency (ESA) probe will at last be setting off on its journey to meet Comet Churyumov-Gerasimenko. The long-planned get-together will not however take place until the middle of 2014. A few months after arriving at the comet, Rosetta will release a small lander onto its surface. Then, for almost two years it will investigate Churyumov-Gerasimenko from close up. Dr Gerhard Schwehm, lead scientist for the Rosetta project, explains that, “With this mission we will be breaking new ground - this will be the first protracted cometary encounter.” The trip to the meeting place in space will certainly be a long one, located as it is some 4.5 astronomical units from the Sun, which translates into something like 675 million kilometres. Rosetta will be on the road for ten years, during which time it will clock up in excess of five billion kilometres. Launch in February 2004 Rosetta will be waved off on 26 February when it lifts off from the space centre in Kourou, French Guiana, aboard an Ariane 5 launcher. Shortly after the spacecraft’s release, its solar panels will be deployed and turned towards the Sun to build up the necessary power reserves. Its various systems and experiments will be gradually brought into operation and tested. Just three months into the mission the first active phase will be over, followed by final testing of the experiments in October 2004. Rosetta will then spend the following years flying a lonely path to the comet, passing by the Earth, Mars, the Earth and the Earth again. There is no alternative to this detour, for even Ariane 5, the most powerful launcher on the market today, lacks the power to hurl the probe on a direct route to the comet. To get the required momentum, it will rely on swing-by manœuvres, using the gravitation pull of Mars (in 2007) and the Earth (three times, in 2005, 2007 and 2008) to pick up speed. Asteroids for company A change is as good as a rest, and a meeting with at least one asteroid should help break the monotony for Rosetta. The spacecraft will come close to an asteroid at the end of 2008. Asteroids are, it will be remembered, rocky bodies, some as large as mountains, some even larger, that orbit the Sun in much the same way as planets. “These ‘brief encounters’ are a scientific opportunity and also a chance to test Rosetta’s instrument payload,” says Gerhard Schwehm. But asteroid exploration also serves an entirely practical purpose: “The more we find out about them, the better the prospect of being able one day to avert a possible collision.” Following a period of low-activity cruising, the probe’s course will be adjusted one last time in May 2011. From July 2011, a further two-and-a-half years' radio silence will be observed, and Rosetta, left entirely to its own resources, will fly close to the Jupiter orbit. Link-up in 2014 Finally, in January 2014, the probe will be reactivated and will, by October 2014, be only a few kilometres distant from Churyumov-Gerasimenko. This is where the dream of so many scientists becomes reality. Having deposited its precious lander cargo on the comet’s surface, Rosetta will continue to orbit Churyumov-Gerasimenko and together they will spend the next seventeen months flying towards the Sun. Rosetta was built by an international consortium led by Astrium. The lander probe was developed in Cologne under the aegis of the DLR, Germany’s space agency, with contributions from ESA and research centres in Austria, Finland, France, Hungary, Ireland, Italy and Great Britain. The comet explorer carries ten scientific instruments. Their job is to draw out the secrets of the comet’s chemical and physical composition and reveal its magnetic and electrical properties. Using a specially designed camera, the lander will take pictures in the macro and micro ranges and send all the data thus acquired back to Earth, via Rosetta. “This will be our first ever chance to be there, at first hand, so to speak, as a comet comes to life,” Schwehm goes on to explain. When Churyumov-Gerasimenko gets to within about 500 million kilometres of the Sun, the frozen gases that envelop it will evaporate and a trail of dust will be blown back over hundreds of thousands of kilometres. When illuminated by the Sun, this characteristic comet tail then becomes visible from Earth. In the course of the mission, the processes at work within the cometary nucleus will be studied and measured more precisely than has ever before been possible, for earlier probes simply flew past their targets. “As we will be accompanying Churyumov-Gerasimenko for two years, until the comet reaches the point closest to the Sun and travels away from it, we can at long last hope to acquire new knowledge about comets. We are confident we will come a step nearer to understanding the origins and formation of our solar system and the emergence of life on Earth.” More information on the Rosetta launch can be found on : http://www.esa.int/rosetta. More on ESA Science Programme at : http://www.esa.int/science

Rosetta Navigation at its Mars Swing-By

NASA Technical Reports Server (NTRS)

Budnik, Frank; Morley, Trevor

2007-01-01

This paper reports on the navigation activities during Rosetta s Mars swing-by. It covers the Mars approach phase starting after a deterministic deep-space maneuver in September 2006, the swing-by proper on 25 February 2007, and ends with another deterministic deep-space maneuver in April 2007 which was also foreseen to compensate any navigation error. Emphasis is put on the orbit determination and prediction set-up and the evolution of the targeting estimates in the B-plane and their adjustments by trajectory correction maneuvers.

Preliminary Geologic Map of the Little Piute Mountains, California; a Digital Database

USGS Publications Warehouse

Howard, Keith A.; Dennis, Michael L.; Karlstrom, Karl; Phelps, Geoffrey A.

1997-01-01

Introduction The Little Piute Mountains in the eastern Mojave Desert expose a series of folds and thrust faults involving metamorphosed Paleozoic strata (Miller and others, 1982; Stone and others, 1983). Detailed mapping of these structures was undertaken to help elucidate regional Mesozoic structural evolution. Earlier geologic maps were prepared by Cooksley (1960a,b,c,d, generalized by Bishop, 1964) and Stone and others (1983). Deformed and metamorphosed Paleozoic and Triassic rocks form a stratal succession that was originally deposited in shallow seas on the North American craton. Based on lithologic sequence the units are correlated with unmetamorphosed equivalents 200 km to the northeast in the Grand Canyon, Arizona, and 35-50 km to the west in the Marble, Ship, and Providence Mountains, California (Stone and others, 1983). The Paleozoic sequence rests nonconformably on a heterogeneous basement of polydeformed Early Proterozoic gneiss (Miller and others, 1982; Wooden and Miller, 1990). Triassic and older rocks were deformed, metamorphosed to staurolite or andalusite grade, and intruded concordantly at their base by Late Cretaceous granodiorite (Miller and others, 1982).

Outbreak of Legionnaires' disease on a cruise ship linked to spa-bath filter stones contaminated with Legionella pneumophila serogroup 5.

PubMed

Kura, F; Amemura-Maekawa, J; Yagita, K; Endo, T; Ikeno, M; Tsuji, H; Taguchi, M; Kobayashi, K; Ishii, E; Watanabe, H

2006-04-01

In January 2003, two cases of Legionnaires' disease associated with a ship's cruise were registered in the database of National Epidemiological Surveillance of Infectious Diseases. A 70-year-old male heavy smoker with mild emphysema contracted the disease during a cruise. Legionella pneumophila serogroup (sg) 5 was isolated from the patient's sputum and the ship's indoor spa. The isolate from the spa matched the patient's isolate by genotyping performed by pulsed-field gel electrophoresis (PFGE). The second case was in a 73-year-old female. During epidemiological investigation, a third case of Legionnaire's disease in a 71-year-old male was subsequently diagnosed among passengers on the same ship on the following cruise. Environmental investigation revealed that porous natural stones (Maifanshi) in the filters of the spas had harboured L. pneumophila, a phenomenon which has not been reported except in Japan. This is the first documented evidence of L. pneumophila sg 5 infection on a ship and of porous stones as a source of Legionella infection.

Plasma properties at 67P/Churyumov-Gerasimenko: a comparision between PP-SESAME/Philae/Rosetta and RPC/MIP/Rosetta

NASA Astrophysics Data System (ADS)

Schmidt, Walter; Henri, Pierre; Lebreton, Jean Pierre; Vallières, Xavier; Grard, Réjean; Hamelin, Michel; Le Gall, Alice; Lethuillier, Anthony; Ciarletti, Valerie; Caujolle-Bert, Sylvain; Seidensticker, Klaus; Fischer, Hans-Herbert

2016-04-01

On November 12, 2014, the Rosetta landing module Philae approached the nucleus of 67P/Churyumov-Gerasimenko and eventually settled on the surface in a location named Abydos, though its exact coordinates are still unknown. The Permittivity Probe (PP) as part of the SESAME (Surface Electric Sounding and Acoustic Monitoring Experiment) instrument package [1] was designed to not only measure the electrical properties of the comet's surface material by actively injecting an alternating current at different frequencies into the material underneath the Lander but also to monitor potential variations between its two receivers and the electrical conductivity of the plasma environment while still in space. By sampling the potential difference at 40 kHz between the soles of two of the feet attached to Philae's landing gear, plasma waves between 20 and 20 000 Hz should be detectable if their amplitudes are large enough. The injection of low frequency currents into the plasma environment during Philae's descent gives indications for changes of the plasma density when approaching the comet. In this paper we present observations from the cross-calibration campaign with the Rosetta plasma package instrument MIP (Mutual Impedance Probe) [2] during the Pre-Delivery Calibration and Science (PDCS) operations on October 17, 2014, during the descent towards the comet surface on November 12, 2014, and from the First Science Sequence at Abydos on November 13. During the PDCS campaign most PP observation slots coincided with plasma waves dominantly in the 100 to 150 kHz range according to MIP measurements. Accordingly PP did not register any signals. Only in the afternoon of the 17th low frequency waves were recorded by MIP. At the same time the measured PP wave power signal was above the background for frequencies below 500 Hz in several subsequent measurements. During the descent [3] the injected current at 758 Hz dropped suddenly by about 5 % possibly indicating a decrease in the plasma density at an altitude of about 18.5 km above the comet surface. During the First Science Sequence PP was monitoring low frequency wave-like activities starting two hours after local sunset. References: [1] K. J. Seidensticker, H-H. Fischer, D. Medlener, S. Schieke, K. Thiel, A. Peter, W. Schmidt and R. Trautner, 2004: The Rosetta lander experiment sesame and the new target comet 67P/Churyumov-Gerasimenko. The New ROSETTA Targets - Observations, Simulations and Instrument Performances, Astrophys. Space Sci. 311, 297-307 [2] J. G. Trotignon et al., RPC-MIP: the Mutual Impedance Probe of the Rosetta Plasma Consortium, Space Science Reviews, February 2007, Volume 128, Issue 1, pp 713-728 [3] H.Krüger et al., Dust Impact Monitor (SESAME-DIM) Measurements at Comet 67P/Churyumov-Gerasimenko, Astronomy&Astrophysics, Volume 583, November 2015, DOI http://dx.doi.org/10.1051/0004-6361/201526400

Human grasping database for activities of daily living with depth, color and kinematic data streams.

PubMed

Saudabayev, Artur; Rysbek, Zhanibek; Khassenova, Raykhan; Varol, Huseyin Atakan

2018-05-29

This paper presents a grasping database collected from multiple human subjects for activities of daily living in unstructured environments. The main strength of this database is the use of three different sensing modalities: color images from a head-mounted action camera, distance data from a depth sensor on the dominant arm and upper body kinematic data acquired from an inertial motion capture suit. 3826 grasps were identified in the data collected during 9-hours of experiments. The grasps were grouped according to a hierarchical taxonomy into 35 different grasp types. The database contains information related to each grasp and associated sensor data acquired from the three sensor modalities. We also provide our data annotation software written in Matlab as an open-source tool. The size of the database is 172 GB. We believe this database can be used as a stepping stone to develop big data and machine learning techniques for grasping and manipulation with potential applications in rehabilitation robotics and intelligent automation.

The U.S. Rosetta Project at Its First Science Target: Asteroid (2867) Steins, 2008

NASA Technical Reports Server (NTRS)

Alexander, C.; Sweetnam, D.; Gulkis, S.; Weissman, P.; Holmes, D.; Parker, J.; Burch, J.; Goldstein, R.; Mokashi, P.; Fuselier, S.;

Modeling and docking antibody structures with Rosetta

PubMed Central

Weitzner, Brian D.; Jeliazkov, Jeliazko R.; Lyskov, Sergey; Marze, Nicholas; Kuroda, Daisuke; Frick, Rahel; Adolf-Bryfogle, Jared; Biswas, Naireeta; Dunbrack, Roland L.; Gray, Jeffrey J.

2017-01-01

We describe Rosetta-based computational protocols for predicting the three-dimensional structure of an antibody from sequence (RosettaAntibody) and then docking the antibody to protein antigens (SnugDock). Antibody modeling leverages canonical loop conformations to graft large segments from experimentally-determined structures as well as (1) energetic calculations to minimize loops, (2) docking methodology to refine the VL–VH relative orientation, and (3) de novo prediction of the elusive complementarity determining region (CDR) H3 loop. To alleviate model uncertainty, antibody–antigen docking resamples CDR loop conformations and can use multiple models to represent an ensemble of conformations for the antibody, the antigen or both. These protocols can be run fully-automated via the ROSIE web server (http://rosie.rosettacommons.org/) or manually on a computer with user control of individual steps. For best results, the protocol requires roughly 1,000 CPU-hours for antibody modeling and 250 CPU-hours for antibody–antigen docking. Tasks can be completed in under a day by using public supercomputers. PMID:28125104

MOSES: a modular sensor electronics system for space science and commercial applications

NASA Astrophysics Data System (ADS)

Michaelis, Harald; Behnke, Thomas; Tschentscher, Matthias; Mottola, Stefano; Neukum, Gerhard

1999-10-01

The camera group of the DLR--Institute of Space Sensor Technology and Planetary Exploration is developing imaging instruments for scientific and space applications. One example is the ROLIS imaging system of the ESA scientific space mission `Rosetta', which consists of a descent/downlooking and a close-up imager. Both are parts of the Rosetta-Lander payload and will operate in the extreme environment of a cometary nucleus. The Rosetta Lander Imaging System (ROLIS) will introduce a new concept for the sensor electronics, which is referred to as MOSES (Modula Sensor Electronics System). MOSES is a 3D miniaturized CCD- sensor-electronics which is based on single modules. Each of the modules has some flexibility and enables a simple adaptation to specific application requirements. MOSES is mainly designed for space applications where high performance and high reliability are required. This concept, however, can also be used in other science or commercial applications. This paper describes the concept of MOSES, its characteristics, performance and applications.

Mating in the Closest Living Relatives of Animals Is Induced by a Bacterial Chondroitinase.

PubMed

Woznica, Arielle; Gerdt, Joseph P; Hulett, Ryan E; Clardy, Jon; King, Nicole

2017-09-07

We serendipitously discovered that the marine bacterium Vibrio fischeri induces sexual reproduction in one of the closest living relatives of animals, the choanoflagellate Salpingoeca rosetta. Although bacteria influence everything from nutrition and metabolism to cell biology and development in eukaryotes, bacterial regulation of eukaryotic mating was unexpected. Here, we show that a single V. fischeri protein, the previously uncharacterized EroS, fully recapitulates the aphrodisiac-like activity of live V. fischeri. EroS is a chondroitin lyase; although its substrate, chondroitin sulfate, was previously thought to be an animal synapomorphy, we demonstrate that S. rosetta produces chondroitin sulfate and thus extend the ancestry of this important glycosaminoglycan to the premetazoan era. Finally, we show that V. fischeri, purified EroS, and other bacterial chondroitin lyases induce S. rosetta mating at environmentally relevant concentrations, suggesting that bacteria likely regulate choanoflagellate mating in nature. Copyright © 2017 Elsevier Inc. All rights reserved.

Replica Exchange Improves Sampling in Low-Resolution Docking Stage of RosettaDock

PubMed Central

Zhang, Zhe; Lange, Oliver F.

2013-01-01

Many protein-protein docking protocols are based on a shotgun approach, in which thousands of independent random-start trajectories minimize the rigid-body degrees of freedom. Another strategy is enumerative sampling as used in ZDOCK. Here, we introduce an alternative strategy, ReplicaDock, using a small number of long trajectories of temperature replica exchange. We compare replica exchange sampling as low-resolution stage of RosettaDock with RosettaDock's original shotgun sampling as well as with ZDOCK. A benchmark of 30 complexes starting from structures of the unbound binding partners shows improved performance for ReplicaDock and ZDOCK when compared to shotgun sampling at equal or less computational expense. ReplicaDock and ZDOCK consistently reach lower energies and generate significantly more near-native conformations than shotgun sampling. Accordingly, they both improve typical metrics of prediction quality of complex structures after refinement. Additionally, the refined ReplicaDock ensembles reach significantly lower interface energies and many previously hidden features of the docking energy landscape become visible when ReplicaDock is applied. PMID:24009670

Teaching Evidence-Based Medicine in the Era of Point-of-Care Databases: The Case of the Giant Bladder Stone.

PubMed

Kash, Melissa J

2016-01-01

In an era where physicians rely on point-of-care databases that provide filtered, pre-appraised, and quickly accessible clinical information by smartphone applications, it is difficult to teach medical students the importance of knowing not only when it is appropriate to search the primary medical literature but also how to do it. This column will describe how librarians at an academic health sciences library use an unusual clinical case to make demonstrations of searching primary medical literature real and meaningful to medical students, and to illustrate vividly the importance of knowing what to do when the answer to a clinical question cannot be found in a point-of-care database.

Diamagnetic region(s): structure of the unmagnetized plasma around Comet 67P/CG

NASA Astrophysics Data System (ADS)

Henri, P.; Vallières, X.; Hajra, R.; Goetz, C.; Richter, I.; Glassmeier, K.-H.; Galand, M.; Rubin, M.; Eriksson, A. I.; Nemeth, Z.; Vigren, E.; Beth, A.; Burch, J. L.; Carr, C.; Nilsson, H.; Tsurutani, B.; Wattieaux, G.

2017-07-01

The ESA's comet chaser Rosetta has monitored the evolution of the ionized atmosphere of comet 67P/Churyumov-Gerasimenko (67P/CG) and its interaction with the solar wind, during more than 2 yr. Around perihelion, while the cometary outgassing rate was highest, Rosetta crossed hundreds of unmagnetized regions, but did not seem to have crossed a large-scale diamagnetic cavity as anticipated. Using in situ Rosetta observations, we characterize the structure of the unmagnetized plasma found around comet 67P/CG. Plasma density measurements from RPC-MIP are analysed in the unmagnetized regions identified with RPC-MAG. The plasma observations are discussed in the context of the cometary escaping neutral atmosphere, observed by ROSINA/COPS. The plasma density in the different diamagnetic regions crossed by Rosetta ranges from ˜100 to ˜1500 cm-3. They exhibit a remarkably systematic behaviour that essentially depends on the comet activity and the cometary ionosphere expansion. An effective total ionization frequency is obtained from in situ observations during the high outgassing activity phase of comet 67P/CG. Although several diamagnetic regions have been crossed over a large range of distances to the comet nucleus (from 50 to 400 km) and to the Sun (1.25-2.4 au), in situ observations give strong evidence for a single diamagnetic region, located close to the electron exobase. Moreover, the observations are consistent with an unstable contact surface that can locally extend up to about 10 times the electron exobase.

In-situ investigations of the ionosphere of comet 67P

NASA Astrophysics Data System (ADS)

Eriksson, A. I.; Edberg, N. J. T.; Odelstad, E.; Vigren, E.; Engelhardt, I.; Henri, P.; Lebreton, J.-P.; Galand, M.; Carr, C. M.; Koenders, C.; Nilsson, H.; Broiles, T.; Rubin, M.

2015-10-01

Since arrival of Rosetta at its target comet 67P/Churyumov-Gerasimenko in August 2014, the plasma environment has been dominated by ionized gas emanating from the comet nucleus rather than by solar wind plasma. This was evident early on from the strong modulation seen with Rosetta's position in a reference frame fixed to the rotating nucleus, with higher plasma densities observed when the spacecraft is above the neck region and when the comet exposes maximum area to the sun. In this respect, Rosetta is inside the comet ionosphere, providing excellent in situ investigation opportunities for the instruments of the Rosetta Plasma Consortium (RPC). In contrast to the often modelled scenario for a very active comet, the Langmuir probe instrument (RPC-LAP) finds electron temperatures mainly in the range of tens of thousand kelvin around this less active comet. This can be attributed to the lower density of neutral gas, meaning little cooling of recently produced electrons. A side effect of this is that the spacecraft charges negatively when within about 100 km from the nucleus. Interesting in itself, this also may point to similar charging for dust grains in the coma, with implications for the detection of the smallest particles and possibly for processes like electrostatic fragmentation. The inner coma also proves to be very dynamic, with large variations not only with latitude and longitude in a comet frame, but also with the solar wind and various wave phenomena.

Rosetta enters hibernation

NASA Astrophysics Data System (ADS)

Ferri, Paolo; Accomazzo, Andrea; Hubault, Armelle; Lodiot, Sylvain; Pellon-Bailon, Jose-Luis; Porta, Roberto

2012-10-01

The International Rosetta Mission was launched on 2nd March 2004 on its 10 years journey to comet 67P/Churyumov-Gerasimenko. Rosetta will reach the comet in 2014, orbit it for about 1.5 years down to distances of a few kilometres and deliver the Lander Philae onto its surface. Following the fly-by of Asteroid (21-)Lutetia in 2010, Rosetta continued its travel towards the planned comet encounter in 2014. In this phase Rosetta became the solar-powered spacecraft that reached the largest Sun distances in history of spaceflight, up to an aphelion at 5.3 AU in October 2012. At distances above 4.5 AU the spacecraft's solar generator power is not sufficient to keep all spacecraft systems active. Therefore in June 2011 the spacecraft was spun up to provide gyroscopic stabilisation, and most of its on-board units, including those used for attitude control and communications, were switched off. Over this "hibernation" phase of about 2.5 years the spacecraft will keep a minimum of autonomy active to ensure maintenance of safe thermal conditions. After Lutetia fly-by, flight controllers had to tackle two anomalies that had significant impacts on the mission operations. A leak in the reaction control subsystem was confirmed and led to the re-definition of the operational strategy to perform the comet rendezvous manoeuvres planned for 2011 and 2014. Anomalous jumps detected in the estimated friction torque of two of the four reaction wheels used for attitude control forced the rapid adoption of measures to slow down the wheels degradation. This included in-flight re-lubrication activities and changes in the wheels operational speed regime. Once the troubleshooting of the two anomalies was completed, and the related operational scenarios were implemented, the first large (790 m/s) comet rendezvous manoeuvre was executed, split into several long burns in January and February 2011. The second burn was unexpectedly interrupted due to the anomalous behaviour of two thrusters, causing attitude off-pointing. Flight controllers modified the thrusters operation parameters in the on-board software and managed to re-start the sequence of burns and successfully complete the manoeuvre. After the manoeuvre, preparation for the critical spin-up and hibernation entry activities, planned for June 2011, began. This paper presents the activities carried out on Rosetta in the final year before hibernation entry. The major anomalies and the related troubleshooting and workaround solutions are detailed. Lessons learned from the operation of the first spacecraft operating with solar power at Jupiter-like distances from the Sun are presented and discussed.

Single-stage laparoscopic common bile duct exploration and cholecystectomy versus two-stage endoscopic stone extraction followed by laparoscopic cholecystectomy for patients with gallbladder stones with common bile duct stones: systematic review and meta-analysis of randomized trials with trial sequential analysis.

PubMed

Singh, Anand Narayan; Kilambi, Ragini

2018-03-30

The ideal management of common bile duct (CBD) stones associated with gall stones is a matter of debate. We planned a meta-analysis of randomized trials comparing single-stage laparoscopic CBD exploration and cholecystectomy (LCBDE) with two-stage preoperative endoscopic stone extraction followed by cholecystectomy (ERCP + LC). We searched the Pubmed/Medline, Web of science, Science citation index, Google scholar and Cochrane Central Register of Controlled trials electronic databases till June 2017 for all English language randomized trials comparing the two approaches. Statistical analysis was performed using Review Manager (RevMan) [Computer program], Version 5.3. Copenhagen: The Nordic Cochrane Centre, The Cochrane Collaboration, 2014 and results were expressed as odds ratio for dichotomous variables and mean difference for continuous. p value ≤ 0.05 was considered significant. Trial sequential analysis (TSA) was performed using TSA version 0.9.5.5 (Copenhagen: The Copenhagen Trial Unit, Centre for Clinical Intervention Research, 2016). PROSPERO trial registration number is CRD42017074673. A total of 11 trials were included in the analysis, with a total of 1513 patients (751-LCBDE; 762-ERCP + LC). LCBDE was found to have significantly lower rates of technical failure [OR 0.59, 95% CI (0.38, 0.93), p = 0.02] and shorter hospital stay [MD - 1.63, 95% CI (- 3.23, - 0.03), p = 0.05]. There was no significant difference in mortality [OR 0.37, 95% CI (0.09, 1.51), p = 0.17], morbidity [OR 0.97, 95% CI (0.70, 1.33), p = 0.84], cost [MD - 379.13, 95% CI (- 784.80, 111.2), p = 0.13] or recurrent/retained stones [OR 1.01, 95% CI (0.38, 2.73), p = 0.98]. TSA showed that although the Z-curve crossed the boundaries of conventional significance, the estimated information size is yet to be achieved. Single-stage LCBDE is superior to ERCP + LC in terms of technical success and shorter hospital stay in good-risk patients with gallstones and CBD stones, where expertise, operative time and instruments are available.

Paediatric cystolitholapaxy through the Mitrofanoff/Monti channel.

PubMed

Thomas, J S; Smeulders, N; Yankovic, F; Undre, S; Mushtaq, I; López, P-J; Cuckow, P

2018-04-04

Bladder calculi are a known complication of bladder augmentation. Open cystolithotomy remains the preferred option for treating large or multiple stones. Increasingly, however, minimal access techniques have been used. Reports of Mitrofanoff cystolitholapaxy are rare and have been limited to adults. This study presented a two centre series of children treated by cystolitholapaxy via the Mitrofanoff/Monti channel. With institutional approval the current study retrospectively reviewed and identified 14 patients, on a prospective database, who underwent Mitrofanoff cystolitholapaxy to treat bladder calculi at two independent institutions in the UK and Chile between 2004 and 2016. It looked at patient demographics, surgical technique, stone clearance and recurrence, as well as leak or catheterisation difficulties of the Mitrofanoff/Monti channel post-procedure. Fourteen patients underwent Mitrofanoff cystolitholapaxy during the period 2004-2016. One patient was excluded due to lack of follow-up. The remaining 13 patients were aged 5-22 (median 14) years at the time of the procedure. Their underlying diagnoses were four neuropathic bladders, four bladder exstrophy, four cloacal exstrophy and one posterior urethral valve. Patients underwent augmentation cystoplasty at a median age of 5 (range 1-15) years, using ileum in 10 and sigmoid colon in three. The channel for clean intermittent catheterisation was an appendix Mitrofanoff in nine and a Monti channel in four. An Amplatz sheath was placed through the Mitrofanoff to allow safe access to the bladder for treating the stones (see Summary Table). Recurrent stones were treated using the same technique. Stone and channel outcomes were analysed for each procedure. There were 22 procedures in 13 patients; five (38%) patients had recurrent stones. Median time to recurrence was 6 months. There were no immediate complications. Stone clearance was confirmed by ultrasound and abdominal x-ray at 3-6 months after the procedure. Median follow-up was 15 (range 3-53) months. There were no leaks or difficulties catheterising the channel on follow-up. This was the first series of Mitrofanoff/Monti cystolitholapaxy for the treatment of calculi in augmented bladders of paediatric patients. Previous concerns about damaging the continence mechanism of the conduit appeared to be unwarranted. The use of an Amplatz sheath protected the continence system from repeated instrumentation, and permitted free backflow of irrigation and rapid clearance of stone fragments. Recurrence of stones occurred in 38%, which was in keeping with rates reported in the wider literature. Mitrofanoff cystolitholapaxy was safe, and with appropriate care did not result in leakage or difficulty catheterising. Copyright © 2018 Journal of Pediatric Urology Company. Published by Elsevier Ltd. All rights reserved.

The activity of C-G at 3.5 AU from the Sun

NASA Astrophysics Data System (ADS)

Rubin, M.; Altwegg, K.

2014-04-01

Starting in early August the ROSINA instrument on board the Rosetta spacecraft (1] saw clearly cometary molecules above the spacecraft background. The COPS sensor, which measures the total density with its nude gauge, registered large density variations in line with the rotation period of the comet. Mapping this to the comet showed that especially the neck of the comet is very active whenever it comes into sunlight. However, the outgassing pattern is more complex. In this talk we give an overview on the measured density profiles along the Rosetta trajectory.

Studies on Thorium Adsorption Characteristics upon Activated Titanium Hydroxide Prepared from Rosetta Ilmenite Concentrate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gado, M, E-mail: parq28@yahoo.com; Zaki, S

2016-01-01

The titanium hydroxide prepared from Rosetta ilmenite concentrate has been applied for Th (IV) adsorption from its acid aqueous solutions. The prepared hydroxide is first characterized by both Fourier transform infrared (FT-IR) spectrum and thermogravimetric analysis. The relevant factors affecting the adsorption process have been studied. The obtained equilibrium data fits well with the Langmuir isotherm rather than Freundlich isotherm, while the adsorption kinetic data follow the pseudo-second order model. The different thermodynamic parameters have also been calculated and indicate that the adsorption process is spontaneous.

A Contingency in the Rosetta Reaction Control System: Alternative Cruise Trajectory Strategies to Cope with Degraded Delta-V Resources

NASA Technical Reports Server (NTRS)

Bauske, Rainer; Companys, Vincente

2007-01-01

Since August 2006 a pressure transducer of the Rosetta Reaction Control System (RCS) shows anomalous telemetries indicating a possible leak in a pressurant line. The future operation mode of the RCS may be affected by this problem, resulting in performance degradation. The current propellant budget and its future evolution are evaluated to show the possible states w.r.t. the required mission delta-V. Alternative cruise trajectory strategies are analyzed, providing delta-V savings, to compensate for the expected performance loss of the RCS.

Magnetic Field Investigations During ROSETTA's Steins Flyby

NASA Astrophysics Data System (ADS)

Glassmeier, K.; Auster, H.; Richter, I.; Motschmann, U.; RPC/ROMAP Teams

2009-05-01

During the recent Steins flyby of the ROSETTA spacecraft magnetic field measurements have been made with both, the RPC orbiter magnetometer and the ROMAP lander magnetometer. These combined magnetic field measurements allow a detailed examination of any magnetic signatures caused either directly by the asteroid or indirectly by Steins different modes of interaction with the solar wind. Comparing our measurements with simulation results show that Steins does not possess a significant remanent magnetization. The magnetization is estimated at less than 1 mAm2/kg. This is significantly different from results at Braille and Gaspra.

Cooperatively Generated Stresslet Flows Supply Fresh Fluid to Multicellular Choanoflagellate Colonies

NASA Astrophysics Data System (ADS)

Roper, Marcus; Dayel, Mark J.; Pepper, Rachel E.; Koehl, M. A. R.

2013-05-01

The flagellated protozoan Salpingoeca rosetta is one of the closest relatives of multicellular animals. Unicellular S. rosetta can be induced to form multicellular colonies, but colonies swim more slowly than individual cells so the advantages conferred by colony formation are uncertain. Here we use theoretical models to show that hydrodynamic cooperation between cells can increase the fluid supply to the colony, an important predictor of feeding rate. Our results suggest that hydrodynamic benefits may have been an important selective factor in the evolution of early multicellular animals.

Cholecystectomy Reduces Recurrent Pancreatitis and Improves Survival After Endoscopic Sphincterotomy.

PubMed

Young, Shih-Hao; Peng, Yen-Ling; Lin, Xi-Hsuan; Chen, Yung-Tai; Luo, Jiing-Chyuan; Wang, Yen-Po; Hou, Ming-Chih; Lee, Fa-Yauh

2017-02-01

The aim of this study was to assess whether cholecystectomy can decrease the recurrent pancreatitis in the elderly patients who received endoscopic retrograde cholangiopancreatography (ERCP) with endoscopic sphincterotomy (EST) and successful clearance of bile duct (BD) stones after gallstone-related acute pancreatitis. We analyzed data from National Health Insurance Research Database of Taiwan. Elderly patients (age ≧70 years old) who had gallstone-related acute pancreatitis and underwent successful EST with BD stones clearance were eligible for enrollment. This nationwide, population-based, propensity score (PS)-matched cohort study involved two cohorts: (1) patients who underwent cholecystectomy after ERCP with BD stone clearance as study group and (2) those who adopted wait-and-see strategy (without cholecystectomy) after ERCP with BD stone clearance as control group. The primary and secondary endpoints were recurrent acute pancreatitis and all-cause mortality, respectively. During the study period, a total of 670 elderly patients (male 291, female 379) with a mean age of 79.1 was enrolled for analysis after PS matching. The incidence rate of recurrent acute pancreatitis was 12.39 per 1000 person-years in the cholecystectomy cohort and 23.94 per 1000 person-years in the PS-matched control cohort. The risk of recurrent acute pancreatitis was significantly lower in the cholecystectomy cohort (HR, 0.56; 95 % confidence interval [CI], 0.34-0.91; P = 0.021). The HR for all-cause mortality among the cholecystectomy cohort was 0.75 (95 % CI, 0.59-0.95; P = 0.016) compared with the control cohort. Cholecystectomy decreased the subsequent recurrent acute pancreatitis and the all-cause mortality in elderly patients with EST and clearance of BD stones after gallstone-related acute pancreatitis.

The State and Future of Mars Polar Science and Exploration

NASA Technical Reports Server (NTRS)

Clifford, Stephen M.; Crisp, David; Fisher, David A.; Herkenhoff, Ken E.; Smrekar, Suzanne E.; Thomas, Peter C.; Wynn-Williams, David D.; Zurek, Richard W.; Barnes, Jeffrey R.; Bills, Bruce G.

2000-01-01

As the planet's principal cold traps, the martian polar regions have accumulated extensive mantles of ice and dust that cover individual areas of approx. 10(exp 6)sq km and total as much as 3-4 km thick. From the scarcity of superposed craters on their surface, these layered deposits are thought to he comparatively young-preserving a record of the seasonal and climatic cycling of atmospheric CO2, H2O, and dust over the past approx. 10(exp 5)-10(exp 8) years. For this reason, the martian polar deposits may serve as a Rosetta Stone for understanding the geologic and climatic history of the planet-documenting variations in insolation (due to quasiperiodic oscillations in the planet's obliquity and orbital elements), volatile mass balance, atmospheric composition, dust storm activity, volcanic eruptions, large impacts, catastrophic floods, solar luminosity, supernovae, and perhaps even a record of microbial life. Beyond their scientific value, the polar regions may soon prove important for another reason-providing a valuable and accessible reservoir of water to support the long-term human exploration of Mars. In this paper we assess the current state of Mars polar research, identify the key questions that motivate the exploration of the polar regions, discuss the extent to which current missions will address these questions, and speculate about what additional capabilities and investigations may be required to address the issues that remain outstanding.

The State and Future of Mars Polar Science and Exploration

USGS Publications Warehouse

Clifford, S.M.; Crisp, D.; Fisher, D.A.; Herkenhoff, K. E.; Smrekar, S.E.; Thomas, P.C.; Wynn-Williams, D. D.; Zurek, R.W.; Barnes, J.R.; Bills, B.G.; Blake, E.W.; Calvin, W.M.; Cameron, J.M.; Carr, M.H.; Christensen, P.R.; Clark, B. C.; Clow, G.D.; Cutts, J.A.; Dahl-Jensen, D.; Durham, W.B.; Fanale, F.P.; Farmer, J.D.; Forget, F.; Gotto-Azuma, K.; Grard, R.; Haberle, R.M.; Harrison, W.; Harvey, R.; Howard, A.D.; Ingersoll, A.P.; James, P.B.; Kargel, J.S.; Kieffer, H.H.; Larsen, J.; Lepper, K.; Malin, M.C.; McCleese, D.J.; Murray, B.; Nye, J.F.; Paige, D.A.; Platt, S.R.; Plaut, J.J.; Reeh, N.; Rice, J.W.; Smith, D.E.; Stoker, C.R.; Tanaka, K.L.; Mosley-Thompson, E.; Thorsteinsson, T.; Wood, S.E.; Zent, A.; Zuber, M.T.; Zwally, H.J.

2000-01-01

As the planet's principal cold traps, the martian polar regions have accumulated extensive mantles of ice and dust that cover individual areas of ???106 km2 and total as much as 3-4 km thick. From the scarcity of superposed craters on their surface, these layered deposits are thought to be comparatively young - preserving a record of the seasonal and climatic cycling of atmospheric CO2, H2O, and dust over the past ???105-108 years. For this reason, the martian polar deposits may serve as a Rosetta Stone for understanding the geologic and climatic history of the planet - documenting variations in insolation (due to quasiperiodic oscillations in the planet's obliquity and orbital elements), volatile mass balance, atmospheric composition, dust storm activity, volcanic eruptions, large impacts, catastrophic floods, solar luminosity, supernovae, and perhaps even a record of microbial life. Beyond their scientific value, the polar regions may soon prove important for another reason - providing a valuable and accessible reservoir of water to support the long-term human exploration of Mars. In this paper we assess the current state of Mars polar research, identify the key questions that motivate the exploration of the polar regions, discuss the extent to which current missions will address these questions, and speculate about what additional capabilities and investigations may be required to address the issues that remain outstanding. ?? 2000 Academic Press.

Gene fusion analysis in the battle against the African endemic sleeping sickness.

PubMed

Trimpalis, Philip; Koumandou, Vassiliki Lila; Pliakou, Evangelia; Anagnou, Nicholas P; Kossida, Sophia

2013-01-01

The protozoan Trypanosoma brucei causes African Trypanosomiasis or sleeping sickness in humans, which can be lethal if untreated. Most available pharmacological treatments for the disease have severe side-effects. The purpose of this analysis was to detect novel protein-protein interactions (PPIs), vital for the parasite, which could lead to the development of drugs against this disease to block the specific interactions. In this work, the Domain Fusion Analysis (Rosetta Stone method) was used to identify novel PPIs, by comparing T. brucei to 19 organisms covering all major lineages of the tree of life. Overall, 49 possible protein-protein interactions were detected, and classified based on (a) statistical significance (BLAST e-value, domain length etc.), (b) their involvement in crucial metabolic pathways, and (c) their evolutionary history, particularly focusing on whether a protein pair is split in T. brucei and fused in the human host. We also evaluated fusion events including hypothetical proteins, and suggest a possible molecular function or involvement in a certain biological process. This work has produced valuable results which could be further studied through structural biology or other experimental approaches so as to validate the protein-protein interactions proposed here. The evolutionary analysis of the proteins involved showed that, gene fusion or gene fission events can happen in all organisms, while some protein domains are more prone to fusion and fission events and present complex evolutionary patterns.

Gas Flows in Dual Active Galactic Nuclei

NASA Astrophysics Data System (ADS)

Mueller Sanchez, Francisco; Comerford, Julia M.; Davies, Richard; Treister, Ezequiel; Privon, George C.; Nevin, Becky

2018-06-01

Dual Active Galactic Nuclei (AGN) are the Rosetta stone to understand the role of galaxy mergers in triggering nuclear activity and regulating black hole (BH) and galaxy growth. But very little is known about the physical processes required to effectively trigger AGN activity and regulate the growth of the two BHs. The work I will present here characterizes for the first time the properties of the stars, gas (molecular, ionized, and highly-ionized) and dust in all the confirmed dual AGN at z < 0.05, using Keck/OSIRIS, VLT/SINFONI, SOFIA/FORCAST, and HST data. I will focus on the interplay between the several complex processes observed in dual AGN, using as an example the prototypical merger system NGC 6240: vigorous star formation, two AGNs, outflowing winds of ionized gas, rippling dust and gas lanes, and tidal tails. In this galaxy, we observe for the first time a dual outflow of different species of gas: an AGN-driven outflow of highly-ionized gas to the northeast and a starburst-driven outflow of ionized hydrogen to the northwest. This shows that stellar feedback and supermassive black hole feedback can work in tandem to regulate the stellar growth of a galaxy after a merger event. These results open a new door to studies of dual AGN and AGN pairs in general, and enable dual AGN to be used, for the first time, for studies of galaxy evolution.

The state and future of Mars polar science and exploration.

PubMed

Clifford, S M; Crisp, D; Fisher, D A; Herkenhoff, K E; Smrekar, S E; Thomas, P C; Wynn-Williams, D D; Zurek, R W; Barnes, J R; Bills, B G; Blake, E W; Calvin, W M; Cameron, J M; Carr, M H; Christensen, P R; Clark, B C; Clow, G D; Cutts, J A; Dahl-Jensen, D; Durham, W B; Fanale, F P; Farmer, J D; Forget, F; Gotto-Azuma, K; Zwally, H J

2000-04-01

As the planet's principal cold traps, the martian polar regions have accumulated extensive mantles of ice and dust that cover individual areas of approximately 10(6) km2 and total as much as 3-4 km thick. From the scarcity of superposed craters on their surface, these layered deposits are thought to be comparatively young--preserving a record of the seasonal and climatic cycling of atmospheric CO2, H2O, and dust over the past approximately 10(5)-10(8) years. For this reason, the martian polar deposits may serve as a Rosetta Stone for understanding the geologic and climatic history of the planet--documenting variations in insolation (due to quasiperiodic oscillations in the planet's obliquity and orbital elements), volatile mass balance, atmospheric composition, dust storm activity, volcanic eruptions, large impacts, catastrophic floods, solar luminosity, supernovae, and perhaps even a record of microbial life. Beyond their scientific value, the polar regions may soon prove important for another reason--providing a valuable and accessible reservoir of water to support the long-term human exploration of Mars. In this paper we assess the current state of Mars polar research, identify the key questions that motivate the exploration of the polar regions, discuss the extent to which current missions will address these questions, and speculate about what additional capabilities and investigations may be required to address the issues that remain outstanding.

A post-Rosetta understanding of polarimetric observations of comets

NASA Astrophysics Data System (ADS)

Levasseur-Regourd, A. Chantal; Ciarletti, Valérie; Hadamcik, Edith; Lasue, Jérémie; Mannel, Thurid

2017-04-01

Numerous polarimetric observations of solar light scattered by dust in cometary comae have been obtained by various teams, providing phase angle and wavelength dependences for many comets and revealing different classes of comets [e.g., 1]. Besides, numerical and experimental simulations have suggested interpretations for such observations. The Rosetta long duration rendezvous with comet 67P/Churyumov-Gerasimenko (thereafter 67P/C-G) now allows us to compare our understanding of the polarimetric properties of cometary dust with the ground-truth provided by the Rosetta mission, at least for two typical results. First, some comets present a highly-polarized positive branch, the most conspicuous case being that of new comet C/1995 O1 Hale-Bopp [2], while other comets suffering a partial fragmentation or a total disruption, such as C/1995 S4 LINEAR [3], present a significant increase in polarization. We will discuss these observations in the context of evidence for changes between the porosity (and possibly the dust/ice ratio) of the subsurface and of the interior of 67P/C-G, a periodic Jupiter Family Comet, as derived from analyses [4] of the CONSERT bi-static radar measurements on board Rosetta and Philae. Secondly, numerical simulations of the phase and wavelength dependence of polarimetric observations of some comets (extensively observed on a wide range of wavelengths and phase angles) have suggested the presence of fractal, likely-porous aggregates and of compact particles within their comae [e.g., 5]. We will review such results in the context of evidence for porous and compact aggregates of submicron-sized grains in the inner coma of 67P/C-G [6], as given by 3D images (with a resolution down to tens of nanometers) of the MIDAS atomic force microscope on board Rosetta. References: [1] Kiselev et al., 2015, In Polarization of stars and planetary systems, CUP 379-404. [2] Levasseur-Regourd & Hadamcik, 2003, JQSRT 79-80, 903-910. [3] Hadamcik & Levasseur-Regourd, 2003, Icarus 166, 188-194. [4] Ciarletti et al., 2015, Astron. Astrophys. 583, A40. [5] Lasue et al., 2009, Icarus 199, 129-144. [6] Mannel et al., 2016, MNRAS 462, S 304-S311.

Structure and dynamics of the umagnetized plasma around comet 67P/CG

NASA Astrophysics Data System (ADS)

Henri, P.; Vallières, X.; Gilet, N.; Hajra, R.; Moré, J.; Goetz, C.; Richter, I.; Glassmeier, K. H.; Galand, M. F.; Heritier, K. L.; Eriksson, A. I.; Nemeth, Z.; Tsurutani, B.; Rubin, M.; Altwegg, K.

2016-12-01

At distances close enough to the Sun, when comets are characterised by a significant outgassing, the cometary neutral density may become large enough for both the cometary plasma and the cometary gas to be coupled, through ion-neutral and electron-neutral collisions. This coupling enables the formation of an unmagnetised expanding cometary ionosphere around the comet nucleus, also called diamagnetic cavity, within which the solar wind magnetic field cannot penetrate. The instruments of the Rosetta Plasma Consortium (RPC), onboard the Rosetta Orbiter, enable us to better constrain the structure, dynamics and stability of the plasma around comet 67P/CG. Recently, magnetic field measurements (RPC-MAG) have shown the existence of such a diamagnetic region around comet 67P/CG [Götz et al., 2016]. Contrary to a single, large scale, diamagnetic cavity such as what was observed around comet Halley, Rosetta have crossed several diamagnetic structures along its trajectory around comet 67P/CG. Using electron density measurements from the Mutual Impedance Probe (RPC-MIP) during the different diamagnetic cavity crossings, identified by the flux gate magnetometer (RPC-MAG), we map the unmagnetised plasma density around comet 67P/CG. Our aims is to better constrain the structure, dynamics and stability of this inner cometary plasma layer characterised by cold electrons (as witnessed by the Langmuir Probes RPC-LAP). The ionisation ratio in these unmagnetised region(s) is computed from the measured electron (RPC-MIP) and neutral gas (ROSINA/COPS) densities. In order to assess the importance of solar EUV radiation as a source of ionisation, the observed electron density will be compared to a the density expected from an ionospheric model taking into account solar radiation absorption. The crossings of diamagnetic region(s) by Rosetta show that the unmagnetised cometary plasma is particularly homogeneous, compared to the highly dynamical magnetised plasma observed in adjacent magnetised regions. Moreover, during the crossings of multiple, successive diamagnetic region(s) over time scales of tens of minutes or hours, the plasma density is almost identical in the different unmagnetised regions, suggesting that these unmagnetised regions may be a single diamagnetic structure crossed several times by Rosetta.

Variegation of active regions on comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Oklay, Nilda; Vincent, Jean-Baptiste; Fornasier, Sonia; Pajola, Maurizio; Besse, Sebastien; Lara, Luisa M.; Barucci, Maria Antonietta; Mottola, Stefano; Sierks, Holger; Pommerol, Antoine; Masoumzadeh, Nafiseh; Lazzarin, Monica; Scholten, Frank; Preusker, Frank; Hall, Ian

2015-11-01

Since Rosetta spacecraft’s arrival to the comet 67P, the OSIRIS scientific imager (Optical, Spectroscopic, and Infrared Remote Imaging System, Keller et al. 2007) is successfully observing the nucleus with high spatial resolution in the 250-1000 nm range thanks to set of 26 dedicated filters.While 67P has a typical red spectral slope, the active areas tend to display bluer spectra (Sierks et al. 2015, Fornasier et al. 2015). We performed a spectral analysis of the active areas and derived spectral characteristics of them, possibly indicating the presence of material enriched in volatiles.The ‘activity thresholds’ spectral method (Oklay et al, 2015) is used for the identification of the active areas. In most cases, areas detected with this technique have been later on confirmed as active sources (Lara et al. 2015, Lin et al. 2015, Vincent et al. 2015) by direct detection of dust jets. This technique is therefore able to identify currently active areas, but also predicts which regions of the surface are likely to become activated once they receive enough insolation.Acknowledgements: OSIRIS was built by a consortium led by the Max-Planck-Institut für Sonnensystemforschung, Göttingen, Germany, in collaboration with CISAS, University of Padova, Italy, the Laboratoire d'Astrophysique de Marseille, France, the Instituto de Astrofi­sica de Andalucia, CSIC, Granada, Spain, the Scientific Support Office of the European Space Agency, Noordwijk, The Netherlands, the Instituto Nacional de Tecnica Aeroespacial, Madrid, Spain, the Universidad Politechnica de Madrid, Spain, the Department of Physics and Astronomy of Uppsala University, Sweden, and the Institut für Datentechnik und Kommunikationsnetze der Technischen Universität Braunschweig, Germany. We thank the Rosetta Science Ground Segment at ESAC, the Rosetta Mission Operations Centre at ESOC and the Rosetta Project at ESTEC for their outstanding work enabling the science return of the Rosetta Mission.Keller, et al. 2007, Space Sci. Rev., 128, 433Sierks et al. 2015, Science, 347,1Fornasier et al. 2015, A&A, published onlineLara et al. 2015, A&A, published onlineLin et al. 2015, A&A, published onlineVincent et al. 2015, A&A, submittedOklay et al. 2015, in preparation

Rosetta/ROSINA observations of the volatiles in the coma of comet 67P/Churyumov-Gerasimenko during the nominal mission

NASA Astrophysics Data System (ADS)

Rubin, M.; Altwegg, K.; Balsiger, H. R.; Berthelier, J. J.; Calmonte, U.; De Keyser, J.; Fiethe, B.; Fuselier, S. A.; Gasc, S.; Gombosi, T. I.; Hässig, M.; Jäckel, A.; Le Roy, L.; Mall, U. A.; Rème, H.; Sémon, T.; Tzou, C. Y.; Wurz, P.

2015-12-01

The European Space Agency's Rosetta spacecraft is in close proximity of comet 67P/Churyumov-Gerasimenko for well over a year now. During this time Rosetta followed the comet from almost 3.5 AU through perihelion at 1.25 AU and away from the Sun again. Part of the scientific payload scrutinizing the comet is the ROSINA experiment, the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis. The suite of instruments consists of the Double Focusing Mass Spectrometer DFMS, the Reflectron Time-Of-Flight mass spectrometer RTOF, and the COmet Pressure Sensor COPS. From the combined measurements by ROSINA, the composition and dynamics of the volatiles in the coma of the comet are derived. On 13 August 2015, comet 67P/Churyumov-Gerasimenko reached perihelion, the point along its orbits that is closest to the Sun. Furthermore equinox occurred in May 2015 leading to a change in season - the previous summer hemisphere is now in winter and vice versa. One of the goals of ROSINA is to track the activity of the comet during its apparition and to investigate potential changes in the chemical composition as the spacecraft orbits around the nucleus. In this presentation we will summarize some key findings obtained during the first year and a half of the nominal mission and present first results comparing the pre- and post perihelion neutral gas coma. The goal of these observations is to gather information about the formation and the composition of the comet and ultimately our early Solar System.

Contingency Operations during Failure of Inertial Attitude Acquisition Due to Star Tracker Blinding for Three-Axes-Stabilized Interplanetary Spacecraft

NASA Technical Reports Server (NTRS)

Keil, Joachim; Herfort, Ulrich

2007-01-01

The three interplanetary ESA missions Mars-Express, Rosetta and Venus-Express (launched 2003, 2004 and 2005 resp.) are three-axes stabilized spacecraft (s/c) that estimate their inertial attitude (i.e. the attitude of the s/c w.r.t. the inertial frame) using measurements from a redundant set of star trackers (STR). Each s/c is equipped with four reaction wheels, a reaction control system based on thrusters and a redundant set of ring laser gyroscopes (gyros). The STR h/w layout of the three s/c is identical whereas there is a difference in the star pattern recognition algorithm of Rosetta which uses five neighbouring stars around a central star instead of star triads. The Rosetta algorithm has been implemented to cope with the presence of false stars which are expected to be seen during operations around the comet. The attitude acquisition capability from lost in space is different also in terms of AOCMS: The survival mode of Rosetta which is entered upon STR failure is presented. The AOCMS of Mars- and Venus-Express manages temporary STR outages during sky occultation by the planet not even by using redundancy. Though, a blinding of both STR during cruise lasting for the order of days confronts the ground operators with the limits of the AOCMS design. The operations and analyses that have been planned and partially been performed to compensate for the outage of the STR are demonstrated for Mars-Express. The caution measures taken before Venus orbit insertion of Venus-Express are detailed.

CNA’s Integrated Ship Database, Fourth Quarter 2011 Update

DTIC Science & Technology

2012-09-01

AKR300 G T-AKR301 G T-AKR302 8 T-AKR303 A 8 T-AKR304 G T-AKR305 G T-AKR30S 8 T- AKR 31l R - G T- AKR 312 G T- AKR 313 8 T- AKR 314 G T- AKR 315...CNA’s Integrated Ship Database Fourth Quarter 2011 Update Gregory N. Suess, Lynette A . McClain, and Rhea Stone CNA Interactive Software DIS-2012-U...no person shall be subject to a penalty for failing to comply with a collection of information if it does not display a currently valid OMB control

Hall effect in the coma of 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Huang, Z.; Tóth, G.; Gombosi, T. I.; Jia, X.; Combi, M. R.; Hansen, K. C.; Fougere, N.; Shou, Y.; Tenishev, V.; Altwegg, K.; Rubin, M.

2018-04-01

Magnetohydrodynamics simulations have been carried out in studying the solar wind and cometary plasma interactions for decades. Various plasma boundaries have been simulated and compared well with observations for comet 1P/Halley. The Rosetta mission, which studies comet 67P/Churyumov-Gerasimenko, challenges our understanding of the solar wind and comet interactions. The Rosetta Plasma Consortium observed regions of very weak magnetic field outside the predicted diamagnetic cavity. In this paper, we simulate the inner coma with the Hall magnetohydrodynamics equations and show that the Hall effect is important in the inner coma environment. The magnetic field topology becomes complex and magnetic reconnection occurs on the dayside when the Hall effect is taken into account. The magnetic reconnection on the dayside can generate weak magnetic field regions outside the global diamagnetic cavity, which may explain the Rosetta Plasma Consortium observations. We conclude that the substantial change in the inner coma environment is due to the fact that the ion inertial length (or gyro radius) is not much smaller than the size of the diamagnetic cavity.

A comparison between VEGA 1, 2 and Giotto flybys of comet 1P/Halley: implications for Rosetta

NASA Astrophysics Data System (ADS)

Volwerk, M.; Glassmeier, K.-H.; Delva, M.; Schmid, D.; Koenders, C.; Richter, I.; Szegö, K.

2014-11-01

Three flybys of comet 1P/Halley, by VEGA 1, 2 and Giotto, are investigated with respect to the occurrence of mirror mode waves in the cometosheath and field line draping in the magnetic pile-up region around the nucleus. The time interval covered by these flybys is approximately 8 days, which is also the approximate length of an orbit or flyby of Rosetta around comet 67P/Churyumov-Gerasimenko. Thus any significant changes observed around Halley are changes that might occur for Rosetta during one pass of 67P/CG. It is found that the occurrence of mirror mode waves in the cometosheath is strongly influenced by the dynamical pressure of the solar wind and the outgassing rate of the comet. Field line draping happens in the magnetic pile-up region. Changes in nested draping regions (i.e. regions with different Bx directions) can occur within a few days, possibly influenced by changes in the outgassing rate of the comet and thereby the conductivity of the cometary ionosphere.

A comparison between VEGA 1, 2 and Giotto flybys of comet 1P/Halley: Implications for Rosetta

NASA Astrophysics Data System (ADS)

Volwerk, Martin; Glassmeier, Karl-Heinz; Delva, Magda; Schmid, Daniel; Koenders, Christoph; Richter, Ingo; Szegö, Karoly

2015-04-01

Three flybys of comet 1P/Halley, by VEGA 1, 2 and Giotto, are investigated with respect to the occurrence of mirror mode waves in the cometosheath and field line draping in the magnetic pile-up region around the nucleus. The time interval covered by these flybys is approximately 8 days, which is also the approximate length of an orbit or flyby of Rosetta around comet 67P/Churyumov-Gerasimenko. Thus any significant changes observed around Halley are changes that might occur for Rosetta during one pass of 67P/CG. It is found that the occurrence of mirror mode waves in the cometosheath is strongly influenced by the dynamical pressure of the solar wind and the outgassing rate of the comet. Field line draping happens in the magnetic pile-up region. Changes in nested draping regions (i.e. regions with different Bx-directions) can occur within a few days, possibly in fluenced by changes in the outgassing rate of the comet and thereby the conductivity of the cometary ionosphere.

The Activity of Comet 67P/Churyumov-Gerasimenko as Seen by Rosetta/OSIRIS

NASA Astrophysics Data System (ADS)

Sierks, H.; Barbieri, C.; Lamy, P. L.; Rodrigo, R.; Rickman, H.; Koschny, D.

2015-12-01

The Rosetta mission of the European Space Agency arrived on August 6, 2014, at the target comet 67P/Churyumov-Gerasimenko. OSIRIS (Optical, Spectroscopic, and Infrared Remote Imaging System) is the scientific imaging system onboard Rosetta. OSIRIS consists of a Narrow Angle Camera (NAC) for the nucleus surface and dust studies and a Wide Angle Camera (WAC) for the wide field gas and dust coma investigations. OSIRIS observed the coma and the nucleus of comet 67P/C-G during approach, arrival, and landing of PHILAE. OSIRIS continued comet monitoring and mapping of surface and activity in 2015 with close fly-bys with high resolution and remote, wide angle observations. The scientific results reveal a nucleus with two lobes and varied morphology. Active regions are located at steep cliffs and collapsed pits which form collimated gas jets. Dust is accelerated by the gas, forming bright jet filaments and the large scale, diffuse coma of the comet. We will present activity and surface changes observed in the Northern and Southern hemisphere and around perihelion passage.

Single-molecule FRET-Rosetta reveals RNA structural rearrangements during human telomerase catalysis

PubMed Central

Parks, Joseph W.; Kappel, Kalli; Das, Rhiju; Stone, Michael D.

2017-01-01

Maintenance of telomeres by telomerase permits continuous proliferation of rapidly dividing cells, including the majority of human cancers. Despite its direct biomedical significance, the architecture of the human telomerase complex remains unknown. Generating homogeneous telomerase samples has presented a significant barrier to developing improved structural models. Here we pair single-molecule Förster resonance energy transfer (smFRET) measurements with Rosetta modeling to map the conformations of the essential telomerase RNA core domain within the active ribonucleoprotein. FRET-guided modeling places the essential pseudoknot fold distal to the active site on a protein surface comprising the C-terminal element, a domain that shares structural homology with canonical polymerase thumb domains. An independently solved medium-resolution structure of Tetrahymena telomerase provides a blind test of our modeling methodology and sheds light on the structural homology of this domain across diverse organisms. Our smFRET-Rosetta models reveal nanometer-scale rearrangements within the RNA core domain during catalysis. Taken together, our FRET data and pseudoatomic molecular models permit us to propose a possible mechanism for how RNA core domain rearrangement is coupled to template hybrid elongation. PMID:28096444

Cometary dust at the smallest scale - latest results of the MIDAS Atomic Force Microscope onboard Rosetta

NASA Astrophysics Data System (ADS)

Bentley, Mark; Torkar, Klaus; Jeszenszky, Harald; Romstedt, Jens; Schmied, Roland; Mannel, Thurid

2015-04-01

The MIDAS instrument onboard the Rosetta orbit is a unique combination of a dust collection and handling system and a high resolution Atomic Force Microscope (AFM). By building three-dimensional images of the dust particle topography, MIDAS addresses a range of fundamental questions in Solar System and cometary science. The first few months of dust collection and scanning revealed a deficit of smaller (micron and below) particles but eventually several 10 µm-class grains were discovered. In fact these were unexpectedly large and close to the limit of what is observable with MIDAS. As a result the sharp tip used by the AFM struck the particles from the side, causing particle breakage and distortion. Analyses so far suggest that the collected particles are fluffy aggregates of smaller sub-units, although determination of the size of these sub-units and high resolution re-imaging remains to be done. The latest findings will be presented here, including a description of the particles collected and the implications of these observations for cometary science and the Rosetta mission at comet 67P.

Analysis of the Cometary Plasma Environment of 67P/Churyumov-Gerasimenko Near Perihelion

NASA Astrophysics Data System (ADS)

Ostaszewski, K.; Goetz, C.; Motschmann, U.; Glassmeier, K. H.

2017-09-01

Over the course of its two year escort phase the Rosetta spacecraft has provided various observations that furthered our understanding of the cometary plasma environment. The use of numerical simulations is essential for this understanding because they allow to place the in situ measurements in a global context, in turn, through observations the numerical models can be ex- tended and improved. We use the simulation code A.I.K.E.F (Müller [7]) to simulate the cometary plasma environment of 67P/Churyumov-Gerasimenko (67P/CG). Based on observations made by the Rosetta spacecraft we extend the numerical model by electron impact ionization and the anisotropic outgassing model by Hansen et al. (2016). Both extensions result in an increase in the cometary ion production rate on the dayside. Therefore, the size of the interaction region and the contained structures increases. This causes the position of the different boundaries, e.g. bow shock, to shift further away from the comet. Considering this we can explain why no bow shock crossings could be observed during the dayside excursion of Rosetta in September 2015.

Expanding endourology for biliary stone disease: the efficacy of intracorporeal lithotripsy on refractory biliary calculi.

PubMed

Sninsky, Brian C; Sehgal, Priyanka D; Hinshaw, J Louis; McDermott, John C; Nakada, Stephen Y

2014-07-01

We evaluated the efficacy of ureteroscopic therapy (electrohydraulic lithotripsy [EHL] and intraductal laser lithotripsy [ILL]) in patients with challenging biliary stones secondary to anatomic variations resulting from a previous surgical procedure, including liver transplantation. A retrospective chart review was performed for all patients with previous surgical alteration of the gastrointestinal (GI) tract who underwent EHL or ILL via peroral or percutaneous access for choledocholithiasis by a single surgeon at our institution from 2000 to 2012. A database containing clinical and surgical variables was created, and long-term follow-up was conducted (3-138 months; median, 99 months). Thirteen patients (51.7±20.0 years; M:F, 10:3) in whom endoscopic retrograde cholangiopancreatography (ERCP), percutaneous transhepatic cholangiography (PTHC), or both failed were identified. Failure of ERCP/PTHC was because of inaccessibility of the calculi in all cases. Stone clearance was achieved in 12/13 (93%) patients; 8/12 (62%) after one procedure, and 4/12 (31%) after two procedures. One patient with biliary cast syndrome needed four interventions over 9 years. Major complications were low, with only one patient with hypotension and cholangitis that resolved with 24 hours of administration of intravenous fluids and antibiotics. Both endoscopic and percutaneous lithotripsies are effective treatments for refractory biliary calculi resulting from the post-surgical GI tract. Although a staged second procedure may be necessary in patients with significant stone burden, this is significantly better than extensive open surgery.

Ultrasound versus liver function tests for diagnosis of common bile duct stones.

PubMed

Gurusamy, Kurinchi Selvan; Giljaca, Vanja; Takwoingi, Yemisi; Higgie, David; Poropat, Goran; Štimac, Davor; Davidson, Brian R

2015-02-26

Ultrasound and liver function tests (serum bilirubin and serum alkaline phosphatase) are used as screening tests for the diagnosis of common bile duct stones in people suspected of having common bile duct stones. There has been no systematic review of the diagnostic accuracy of ultrasound and liver function tests. To determine and compare the accuracy of ultrasound versus liver function tests for the diagnosis of common bile duct stones. We searched MEDLINE, EMBASE, Science Citation Index Expanded, BIOSIS, and Clinicaltrials.gov to September 2012. We searched the references of included studies to identify further studies and systematic reviews identified from various databases (Database of Abstracts of Reviews of Effects, Health Technology Assessment, Medion, and ARIF (Aggressive Research Intelligence Facility)). We did not restrict studies based on language or publication status, or whether data were collected prospectively or retrospectively. We included studies that provided the number of true positives, false positives, false negatives, and true negatives for ultrasound, serum bilirubin, or serum alkaline phosphatase. We only accepted studies that confirmed the presence of common bile duct stones by extraction of the stones (irrespective of whether this was done by surgical or endoscopic methods) for a positive test result, and absence of common bile duct stones by surgical or endoscopic negative exploration of the common bile duct, or symptom-free follow-up for at least six months for a negative test result as the reference standard in people suspected of having common bile duct stones. We included participants with or without prior diagnosis of cholelithiasis; with or without symptoms and complications of common bile duct stones, with or without prior treatment for common bile duct stones; and before or after cholecystectomy. At least two authors screened abstracts and selected studies for inclusion independently. Two authors independently collected data from each study. Where meta-analysis was possible, we used the bivariate model to summarise sensitivity and specificity. Five studies including 523 participants reported the diagnostic accuracy of ultrasound. One studies (262 participants) compared the accuracy of ultrasound, serum bilirubin and serum alkaline phosphatase in the same participants. All the studies included people with symptoms. One study included only participants without previous cholecystectomy but this information was not available from the remaining studies. All the studies were of poor methodological quality. The sensitivities for ultrasound ranged from 0.32 to 1.00, and the specificities ranged from 0.77 to 0.97. The summary sensitivity was 0.73 (95% CI 0.44 to 0.90) and the specificity was 0.91 (95% CI 0.84 to 0.95). At the median pre-test probability of common bile duct stones of 0.408, the post-test probability (95% CI) associated with positive ultrasound tests was 0.85 (95% CI 0.75 to 0.91), and negative ultrasound tests was 0.17 (95% CI 0.08 to 0.33).The single study of liver function tests reported diagnostic accuracy at two cut-offs for bilirubin (greater than 22.23 μmol/L and greater than twice the normal limit) and two cut-offs for alkaline phosphatase (greater than 125 IU/L and greater than twice the normal limit). This study also assessed ultrasound and reported higher sensitivities for bilirubin and alkaline phosphatase at both cut-offs but the specificities of the markers were higher at only the greater than twice the normal limit cut-off. The sensitivity for ultrasound was 0.32 (95% CI 0.15 to 0.54), bilirubin (cut-off greater than 22.23 μmol/L) was 0.84 (95% CI 0.64 to 0.95), and alkaline phosphatase (cut-off greater than 125 IU/L) was 0.92 (95% CI 0.74 to 0.99). The specificity for ultrasound was 0.95 (95% CI 0.91 to 0.97), bilirubin (cut-off greater than 22.23 μmol/L) was 0.91 (95% CI 0.86 to 0.94), and alkaline phosphatase (cut-off greater than 125 IU/L) was 0.79 (95% CI 0.74 to 0.84). No study reported the diagnostic accuracy of a combination of bilirubin and alkaline phosphatase, or combinations with ultrasound. Many people may have common bile duct stones in spite of having a negative ultrasound or liver function test. Such people may have to be re-tested with other modalities if the clinical suspicion of common bile duct stones is very high because of their symptoms. False-positive results are also possible and further non-invasive testing is recommended to confirm common bile duct stones to avoid the risks of invasive testing.It should be noted that these results were based on few studies of poor methodological quality and the results for ultrasound varied considerably between studies. Therefore, the results should be interpreted with caution. Further studies of high methodological quality are necessary to determine the diagnostic accuracy of ultrasound and liver function tests.

A Search for Rarely Seen Ultraviolet Coma Emissions and New Species Upper Limits at Comet 67P/Churyumov-Gerasimenko Using the Rosetta-Alice Ultraviolet Spectrograph

NASA Astrophysics Data System (ADS)

Noonan, J.; Stern, S. A.; Parker, J. W.; Keeney, B. A.; Weaver, H. A., Jr.; Feldman, P.; Steffl, A.; Feaga, L. M.; Bertaux, J. L.

2017-12-01

The Alice far/extreme-UV spectrograph aboard Rosetta is one of three US instruments provided by NASA; it is the first UV spectrograph to reach any comet. Numerous scientific results have been obtained regarding 67P/Churyumov-Gerasimenko by this instrument. Here we summarize two new sets of results from a search for rarely appearing atomic and molecular spectral emission features and a grand sum spectrum allowing us to place new atomic and molecular neutral and ionized species upper limits in the comet's coma.

Rosetta Mission's "7 Hours of Terror" and Philae's Descent

NASA Astrophysics Data System (ADS)

Blanco, Philip

2015-09-01

In November 2014 the Rosetta mission to Comet 67P/Churyumov-Gerasimenko made the headlines when its Philae lander completed a successful unpowered descent onto the surface of the comet nucleus after "7 hours of terror" for the mission scientists. 67P's irregular shape and rotation made this task even more challenging. Philae fell almost radially towards 67P, as shown in an animation produced by the European Space Agency (ESA) prior to the event. Below, we investigate whether it is possible to model the spacecraft's descent time and impact speed using concepts taught in an introductory physics course.

The Urologist's Guide to the Galaxy

NASA Astrophysics Data System (ADS)

Moran, Michael E.

2007-04-01

``Far out in the uncharted backwaters of the unfashionable end of the Western Spiral arm of the Galaxy....'' Stone disease has affected mankind since earliest recorded history and will trouble us as we strive for the stars. Zero and microgravity are risk factors for urolithiasis, but the incidence is not yet known. Yet, the possible ``century of space exploration'' lies before us if payloads can be inexpensively offloaded from Earth's surface to orbit. The scientific publications about medical conditions of astronauts, deep water environments (submarine) and extreme conditions (Arctic and Antarctic) were reviewed to better understand the urologic risks. Actual events were next sought and any scientific data regarding therapeutic intent was carefully scrutinized. Incidence and risk potential could then be calculated and potential for intervention would then be known. The National Space Biomedical Research Institute has classified space health hazards and stone disease as ``Risk 12.'' Combined statistics from NASA's Gemini, Apollo, and Space Shuttle flights and long-term missions such as Shuttle-Mir or Skylab fail to reveal any ``disclosed'' emergency stone events. One published article suggests that some cosmonauts have in fact formed stones during space missions. Detailed data from 79 U.S. space missions, involving 219 person-flights, and 175 astronauts show 23 genitourinary problems (1.2 % or 0.07 incidence for 7 days). Submarine encounters are different, however, with 1.8 to 2.6 actual emergency evacuations per 1,000 person months and 23 kidney stone events (data from all subs in U.S. Atlantic Fleet 1993-1996). Extreme environment data appears more similar to that of spaceflight (despite full Earth's gravity) with 1,967 person-years distribution showing no definite stone formation/evacuation (but 335 or 3.6% were not-specified). Pak and co-workers at the University of Texas, Southwestern have extensively evaluated the metabolic consequences of bone-mineral loss and urinary parameters associated with the increased risk of stone formation in space. Astronauts are at significantly greater risk of forming calcium oxalate, calcium phosphate and uric acid stones, and this persists for a period of time following return to normal gravity. Conflicting data exists regarding submarine and extreme environmental databases as to the ``actual'' space mission risks but the hazard is real. Attempts to evaluate both diagnostic and therapeutic interventions are being pursued. As the number of space visitors increases, so should the incidence of urolithiasis. Both diagnostic and therapeutic methods need to be developed coincident to our further efforts in space.

The geological heritage of Piedmont Region: Turin a "Stone-Town"

NASA Astrophysics Data System (ADS)

Borghi, Alessandro; Castelli, Daniele; Costa, Emanuele; d'Atri, Anna; Antonella Dino, Giovanna; Favero, Sergio; Ferrando, Simona; Groppo, Chiara; Martire, Luca; Piervittori, Rosanna; Rolfo, Franco; Rossetti, Piergiorgio; Vaggelli, Gloria

2013-04-01

The stone resources have always been a major source of material in the building and, in particular, as raw material to create the masterpieces of sculpture and architecture that are now part of the cultural heritage of the humanity. Therefore, knowledge of stone resources, their mineral-petrographic features, their use and quarrying and working techniques from antiquity to the present, can provide a broad overview of the historical and cultural significance of these materials, stressing the importance of a relevant economic activity in the history and traditions of different cultures that have developed over the centuries in the Mediterranean area. In particular, in Piedmont, stone has always been the most widely used building material, characterizing the strong architectural identity of the city of Turin. Here the stone have been widely used in the historical and contemporary buildings, monuments and urban art. From Roman times to the '700, marbles were the rocks used in construction of more value. Starting from '800, granites and other silicate rocks were progressively used thanks to the development of technologies for their exploitation and processing. The study of stone resources is also of particular importance for the proper preservation of architectural and artistic heritage. Often, the task of restoration of works of art was carried out with stones aesthetically similar to the originals for color. Only recently, chances to find the same original material, identifying the place of origin, has become object of study and interest. The great variety of ornamental and building stones found in Turin is certainly due to the highly composite geological nature of our region. In Piedmont, in fact, there are geological features very different from each other as the western portion of the metamorphic Alpine chain, the sedimentary Tertiary Piedmont basin (Langhe and Monferrato) and a small sector of the Northern Apennine. Turin Urban Geosite represents the symbol place of interaction between man and the geological environment also in terms of cultural resources and development of the territory. This research provides a detailed list of the many historic and contemporary Piedmont stones, which over the centuries have been using in buildings and architecture. The main ornamental stones employed in Turin are being identified and characterized by the petrographic and mineralogical point of view in order to identify the belonging geological units as well as the quarrying sites. The creation of a comprehensive database on the Piedmont rocks used in buildings of historical and contemporary highlights of the city of Turin is expected by our research. It will include the full name of the rock (commercial and scientific), the location of the quarry site, the main applications in buildings and monuments of Turin, the macroscopic and microscopic description illustrated by extensive iconographic material. Main emphasis will be given to the rock types used for external installation as easily seen during touristic city tours.

Analysis of Rosetta/VIRTIS spectra of earth using observations from ENVISAT/AATSR, TERRA/MODIS and ENVISAT/SCIAMACHY, and radiative-transfer simulations

NASA Astrophysics Data System (ADS)

Hurley, J.; Irwin, P. G. J.; Adriani, A.; Moriconi, M.; Oliva, F.; Capaccioni, F.; Smith, A.; Filacchione, G.; Tosi, F.; Thomas, G.

2014-01-01

Rosetta, the Solar System cornerstone mission of ESA's Horizon 2000 programme, consists of an orbiter and a lander, and is due to arrive at the comet 67P/Churyumov-Gerasimenko in May 2014. Following its 2004 launch, Rosetta carried out a series of planetary fly-bys and gravitational assists. On these close fly-bys of the Earth, measurements were taken by the Visible Infrared Thermal Imaging Spectrometer (VIRTIS). Analysis of these spectra and comparison with spectra acquired by Earth-observing satellites can support the verification of the inflight calibration of Rosetta/VIRTIS. In this paper, measurements taken by VIRTIS in November 2009 are compared with suitable coincident data from Earth-observing instruments (ESA-ENVISAT/AATSR and SCIAMACHY, and EOS-TERRA/MODIS). Radiative transfer simulations using NEMESIS (Irwin et al., 2008) are fit to the fly-by data taken by VIRTIS, using representative atmospheric and surface parameters. VIRTIS measurements correlate 90% with AATSR's, 85-94% with MODIS, and 82-88% with SCIAMACHYs. The VIRTIS spectra are reproducible in the 1-5 μm region, except in the 1.4 μm deep water vapour spectral absorption band in the near-infrared in cases in which the radiance is very low (cloud-free topographies), where VIRTIS consistently registers more radiance than do MODIS and SCIAMACHY. Over these cloud-free regions, VIRTIS registers radiances a factor of 3-10 larger than SCIAMACHY and of 3-8 greater than MODIS. It is speculated that this discrepancy could be due to a spectral light leak originating from reflections from the order-sorting filters above the detector around 1.4 μm.

Vertical structure of the near-surface expanding ionosphere of comet 67P probed by Rosetta

NASA Astrophysics Data System (ADS)

Heritier, K. L.; Henri, P.; Vallières, X.; Galand, M.; Odelstad, E.; Eriksson, A. I.; Johansson, F. L.; Altwegg, K.; Behar, E.; Beth, A.; Broiles, T. W.; Burch, J. L.; Carr, C. M.; Cupido, E.; Nilsson, H.; Rubin, M.; Vigren, E.

2017-07-01

The plasma environment has been measured for the first time near the surface of a comet. This unique data set has been acquired at 67P/Churyumov-Gerasimenko during ESA/Rosetta spacecraft's final descent on 2016 September 30. The heliocentric distance was 3.8 au and the comet was weakly outgassing. Electron density was continuously measured with Rosetta Plasma Consortium (RPC)-Mutual Impedance Probe (MIP) and RPC-LAngmuir Probe (LAP) during the descent from a cometocentric distance of 20 km down to the surface. Data set from both instruments have been cross-calibrated for redundancy and accuracy. To analyse this data set, we have developed a model driven by Rosetta Orbiter Spectrometer for Ion and Neutral Analysis-COmetary Pressure Sensor total neutral density. The two ionization sources considered are solar extreme ultraviolet radiation and energetic electrons. The latter are estimated from the RPC-Ion and Electron Sensor (IES) and corrected for the spacecraft potential probed by RPC-LAP. We have compared the results of the model to the electron densities measured by RPC-MIP and RPC-LAP at the location of the spacecraft. We find good agreement between observed and modelled electron densities. The energetic electrons have access to the surface of the nucleus and contribute as the main ionization source. As predicted, the measurements exhibit a peak in the ionospheric density close to the surface. The location and magnitude of the peak are estimated analytically. The measured ionospheric densities cannot be explained with a constant outflow velocity model. The use of a neutral model with an expanding outflow is critical to explain the plasma observations.

Rosetta: Ensuring the Preservation and Usability of ASCII-based Data into the Future

NASA Astrophysics Data System (ADS)

Ramamurthy, M. K.; Arms, S. C.

2015-12-01

Field data obtained from dataloggers often take the form of comma separated value (CSV) ASCII text files. While ASCII based data formats have positive aspects, such as the ease of accessing the data from disk and the wide variety of tools available for data analysis, there are some drawbacks, especially when viewing the situation through the lens of data interoperability and stewardship. The Unidata data translation tool, Rosetta, is a web-based service that provides an easy, wizard-based interface for data collectors to transform their datalogger generated ASCII output into Climate and Forecast (CF) compliant netCDF files following the CF-1.6 discrete sampling geometries. These files are complete with metadata describing what data are contained in the file, the instruments used to collect the data, and other critical information that otherwise may be lost in one of many README files. The choice of the machine readable netCDF data format and data model, coupled with the CF conventions, ensures long-term preservation and interoperability, and that future users will have enough information to responsibly use the data. However, with the understanding that the observational community appreciates the ease of use of ASCII files, methods for transforming the netCDF back into a CSV or spreadsheet format are also built-in. One benefit of translating ASCII data into a machine readable format that follows open community-driven standards is that they are instantly able to take advantage of data services provided by the many open-source data server tools, such as the THREDDS Data Server (TDS). While Rosetta is currently a stand-alone service, this talk will also highlight efforts to couple Rosetta with the TDS, thus allowing self-publishing of thoroughly documented datasets by the data producers themselves.

Science operations planning and implementation for Rosetta

NASA Astrophysics Data System (ADS)

Koschny, Detlef; Sweeney, Mark; Montagon, Elsa; Hoofs, Raymond; van der Plas, Peter

2002-07-01

The Rosetta mission is a cornerstone mission of the Horizon 2000 programme of the European Space Agency. It will be launched to comet 46P/Wirtanen in January 2003. This mission is the first of a series of planetary missions, including Mars Express, Smart-I (to the Moon), and BepiColombo (to Mercury). All these missions have similar requirements for their scientific operations. The Experiments H/W and S/W are developed by Principal Investigators, working at scientific institutes. They are also responsible for the operation of their experiments and for the generation of related operational documentation. The Science Operations Centre (SOC) has the task to consolidate the inputs of the different experimenters and the Lander and ensure that the resulting science operations timeline is free of conflicts. It forwards this timeline to the Mission Operations Centre (MOC) which combines the science operations with the operations of the other spacecraft subsystems and the orbit and attitude of the spacecraft. The MOC is also responsible for uplinking the operational command sequences to the spacecraft and for returning the received telemetry to the user. In a collaboration between the team of the Rosetta Project Scientist at the Research and Science Support Department of ESA/ESTEC and the European Space Operations Centre (ESA/ESOC), a concept for the SOC/MOC and their interfaces was developed for the Rosetta mission. This concept is generic enough to allow its implementation also for the other planetary missions. The design phase is now complete, and implementation is on-going. This paper briefly presents the architecture of the complex ground segment, concentrating on the elements required for planning of scientific operations, and then details the software tools EPS (Experiment Planning System) and PTB (Project Test Bed) which are used in the planning process.

Comet 67P Seen by Kepler

NASA Image and Video Library

2016-10-07

The European Space Agency's Rosetta mission concluded its study of comet 67P/Churyumov-Gerasimenko on Sept. 30, 2016. NASA's planet-hunting Kepler spacecraft observed the comet during the final month of the Rosetta mission, while the comet was not visible from Earth. This animation is composed of images from Kepler of the comet. From Sept. 7 through Sept. 20, the Kepler spacecraft, operating in its K2 mission, fixed its gaze on comet 67P. From the distant vantage point of Kepler, the comet's nucleus and tail could be observed. The long-range view from Kepler complements the closeup view of the Rosetta spacecraft, providing context for the high-resolution investigation Rosetta performed as it descended closer and closer to the comet. During the two-week period of study, Kepler took a picture of the comet every 30 minutes. The animation shows a period of 29.5 hours of observation from Sept. 17 thru Sept. 18. The comet is seen passing through Kepler's field of view from top right to bottom left, as outlined by the diagonal strip. The white dots represent stars and other regions in space studied during K2's tenth observing campaign. As a comet travels through space it sheds a tail of gas and dust. The more material that is shed, the more surface area there is to reflect sunlight. A comet's activity level can be obtained by measuring the reflected sunlight. Analyzing the Kepler data, scientists will be able to determine the amount of mass lost each day as comet 67P travels through the solar system. An animation is available at http://photojournal.jpl.nasa.gov/catalog/PIA21072

The dust environment of 67P/Churyumov-Gerasimenko as seen through Rosetta/OSIRIS

NASA Astrophysics Data System (ADS)

Tubiana, Cecilia; Bertini, Ivano; Deller, Jakob; Drolshagen, Esther; Frattin, Elisa; Güttler, Carsten; Hofmann, Marc; Koschny, Detlef; Oklay, Nilda; Ott, Theresa; Shi, Xian; Sierks, Holger; Vincent, Jean-Baptiste; OSIRIS Team

2016-10-01

The ESA's Rosetta spacecraft had the unique opportunity to stay in the vicinity of the comet for two years, observing how the comet evolved while approaching the Sun, passing through perihelion and then moving outwards. OSIRIS, the Optical, Spectroscopic, and Infrared Remote Imaging System onboard Rosetta, imaged the nucleus and the dust environment of 67/Churyumov-Gerasimenko since the beginning of post-hibernation operations in March 2014. We focus here on dust studies carried on with OSIRIS.Images obtained in different filters in the visible wavelength range have been used to study the unresolved dust coma, investigating its diurnal and seasonal variations and providing insights into the dust composition. A correlation has been found between the level of diurnal activity and the region of the nucleus surface in sunlight, suggesting that the topography and/or composition of the surface play an important role. The overall activity increases while the comet is approaching the Sun, peaking about a month after perihelion. Comparison with ground-based observations will allow to understand if the dust coma behaves in similar ways at small scales - as observed by Rosetta/OSIRIS - and at large scales - as observed from ground. Several times during the mission, we acquired images spanning the phase angle range 0-165 degrees. They are used to determine the dust phase function in different wavelengths, its evolution with heliocentric distance and to investigate the intimate nature of cometary dust aggregates by solving the inverse scattering problem. A large amount of individual aggregates is present in the vicinity of 67P/Churyumov-Gerasimenko. We used OSIRIS NAC and WAC images to determine the aggregate properties: size and distance distributions, colors and rotation. Thanks to observations performed at different heliocentric distances, we address how those properties are changing with heliocentric distance.

Probabilistic Modeling of the Renal Stone Formation Module

NASA Technical Reports Server (NTRS)

Best, Lauren M.; Myers, Jerry G.; Goodenow, Debra A.; McRae, Michael P.; Jackson, Travis C.

2013-01-01

The Integrated Medical Model (IMM) is a probabilistic tool, used in mission planning decision making and medical systems risk assessments. The IMM project maintains a database of over 80 medical conditions that could occur during a spaceflight, documenting an incidence rate and end case scenarios for each. In some cases, where observational data are insufficient to adequately define the inflight medical risk, the IMM utilizes external probabilistic modules to model and estimate the event likelihoods. One such medical event of interest is an unpassed renal stone. Due to a high salt diet and high concentrations of calcium in the blood (due to bone depletion caused by unloading in the microgravity environment) astronauts are at a considerable elevated risk for developing renal calculi (nephrolithiasis) while in space. Lack of observed incidences of nephrolithiasis has led HRP to initiate the development of the Renal Stone Formation Module (RSFM) to create a probabilistic simulator capable of estimating the likelihood of symptomatic renal stone presentation in astronauts on exploration missions. The model consists of two major parts. The first is the probabilistic component, which utilizes probability distributions to assess the range of urine electrolyte parameters and a multivariate regression to transform estimated crystal density and size distributions to the likelihood of the presentation of nephrolithiasis symptoms. The second is a deterministic physical and chemical model of renal stone growth in the kidney developed by Kassemi et al. The probabilistic component of the renal stone model couples the input probability distributions describing the urine chemistry, astronaut physiology, and system parameters with the physical and chemical outputs and inputs to the deterministic stone growth model. These two parts of the model are necessary to capture the uncertainty in the likelihood estimate. The model will be driven by Monte Carlo simulations, continuously randomly sampling the probability distributions of the electrolyte concentrations and system parameters that are inputs into the deterministic model. The total urine chemistry concentrations are used to determine the urine chemistry activity using the Joint Expert Speciation System (JESS), a biochemistry model. Information used from JESS is then fed into the deterministic growth model. Outputs from JESS and the deterministic model are passed back to the probabilistic model where a multivariate regression is used to assess the likelihood of a stone forming and the likelihood of a stone requiring clinical intervention. The parameters used to determine to quantify these risks include: relative supersaturation (RS) of calcium oxalate, citrate/calcium ratio, crystal number density, total urine volume, pH, magnesium excretion, maximum stone width, and ureteral location. Methods and Validation: The RSFM is designed to perform a Monte Carlo simulation to generate probability distributions of clinically significant renal stones, as well as provide an associated uncertainty in the estimate. Initially, early versions will be used to test integration of the components and assess component validation and verification (V&V), with later versions used to address questions regarding design reference mission scenarios. Once integrated with the deterministic component, the credibility assessment of the integrated model will follow NASA STD 7009 requirements.

[Research on Zhejiang blood information network and management system].

PubMed

Yan, Li-Xing; Xu, Yan; Meng, Zhong-Hua; Kong, Chang-Hong; Wang, Jian-Min; Jin, Zhen-Liang; Wu, Shi-Ding; Chen, Chang-Shui; Luo, Ling-Fei

2007-02-01

This research was aimed to develop the first level blood information centralized database and real time communication network at a province area in China. Multiple technology like local area network database separate operation, real time data concentration and distribution mechanism, allopatric backup, and optical fiber virtual private network (VPN) were used. As a result, the blood information centralized database and management system were successfully constructed, which covers all the Zhejiang province, and the real time exchange of blood data was realised. In conclusion, its implementation promote volunteer blood donation and ensure the blood safety in Zhejiang, especially strengthen the quick response to public health emergency. This project lays the first stone of centralized test and allotment among blood banks in Zhejiang, and can serve as a reference of contemporary blood bank information systems in China.

Evolution of Icy Dust Grains in the Vicinity of a Cometary Nucleus

NASA Astrophysics Data System (ADS)

Hilchenbach, M.

2009-12-01

From late 2014 onwards, ESA's cornerstone mission ROSETTA will orbit the comet 67P/Churyumov-Gerasimenko. One instrument, COSIMA, will collect cometary dust grains and analyze the grains via secondary mass spectrometry. Models of the evolution of icy dust, accelerated by drag forces of subliming gas and exposed to solar radiation, should set constrains on the detection limits of the COSIMA instrument for volatile icy components. A straightforward modeling approach is applied as a baseline for the observational planing schedule of the instrument operations in the years 2014/2015 as ROSETTA escorts the comet nucleus up to perihelion and beyond.

Magnetic field investigations during ROSETTA's 2867 Šteins flyby

NASA Astrophysics Data System (ADS)

Auster, H. U.; Richter, I.; Glassmeier, K. H.; Berghofer, G.; Carr, C. M.; Motschmann, U.

2010-07-01

During the 2867 Šteins flyby of the ROSETTA spacecraft on September 5, 2008 magnetic field measurements have been made with both the RPC orbiter magnetometer and the ROMAP lander magnetometer. These combined magnetic field measurements allow a detailed examination of any magnetic signatures caused either directly by the asteroid or indirectly by Šteins' different modes of interaction with the solar wind. Comparing measurements with simulation results show that Šteins does not posses a significant remanent magnetization. The magnetization is estimated at less than 10 -3 A m 2/kg. This is significantly different from results at 9969 Braille and 951 Gaspra.

Modeling the Structure of Helical Assemblies with Experimental Constraints in Rosetta.

PubMed

André, Ingemar

2018-01-01

Determining high-resolution structures of proteins with helical symmetry can be challenging due to limitations in experimental data. In such instances, structure-based protein simulations driven by experimental data can provide a valuable approach for building models of helical assemblies. This chapter describes how the Rosetta macromolecular package can be used to model homomeric protein assemblies with helical symmetry in a range of modeling scenarios including energy refinement, symmetrical docking, comparative modeling, and de novo structure prediction. Data-guided structure modeling of helical assemblies with experimental information from electron density, X-ray fiber diffraction, solid-state NMR, and chemical cross-linking mass spectrometry is also described.

Model-Observation Comparisons of Electron Number Densities in the Coma of 67P/Churyumov-Gerasimenko during January 2015

NASA Astrophysics Data System (ADS)

Vigren, E.; Altwegg, K.; Edberg, N. J. T.; Eriksson, A. I.; Galand, M.; Henri, P.; Johansson, F.; Odelstad, E.; Tzou, C.-Y.; Valliéres, X.

2016-09-01

During 2015 January 9-11, at a heliocentric distance of ˜2.58-2.57 au, the ESA Rosetta spacecraft resided at a cometocentric distance of ˜28 km from the nucleus of comet 67P/Churyumov-Gerasimenko, sweeping the terminator at northern latitudes of 43°N-58°N. Measurements by the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis/Comet Pressure Sensor (ROSINA/COPS) provided neutral number densities. We have computed modeled electron number densities using the neutral number densities as input into a Field Free Chemistry Free model, assuming H2O dominance and ion-electron pair formation by photoionization only. A good agreement (typically within 25%) is found between the modeled electron number densities and those observed from measurements by the Mutual Impedance Probe (RPC/MIP) and the Langmuir Probe (RPC/LAP), both being subsystems of the Rosetta Plasma Consortium. This indicates that ions along the nucleus-spacecraft line were strongly coupled to the neutrals, moving radially outward with about the same speed. Such a statement, we propose, can be further tested by observations of H3O+/H2O+ number density ratios and associated comparisons with model results.

Effective ion speeds at ˜200-250 km from comet 67P/Churyumov-Gerasimenko near perihelion

NASA Astrophysics Data System (ADS)

Vigren, E.; André, M.; Edberg, N. J. T.; Engelhardt, I. A. D.; Eriksson, A. I.; Galand, M.; Goetz, C.; Henri, P.; Heritier, K.; Johansson, F. L.; Nilsson, H.; Odelstad, E.; Rubin, M.; Stenberg-Wieser, G.; Tzou, C.-Y.; Vallières, X.

2017-07-01

In 2015 August, comet 67P/Churyumov-Gerasimenko, the target comet of the ESA Rosetta mission, reached its perihelion at ˜1.24 au. Here, we estimate for a three-day period near perihelion, effective ion speeds at distances ˜200-250 km from the nucleus. We utilize two different methods combining measurements from the Rosetta Plasma Consortium (RPC)/Mutual Impedance Probe with measurements either from the RPC/Langmuir Probe or from the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA)/Comet Pressure Sensor (COPS) (the latter method can only be applied to estimate the effective ion drift speed). The obtained ion speeds, typically in the range 2-8 km s-1, are markedly higher than the expected neutral outflow velocity of ˜1 km s-1. This indicates that the ions were de-coupled from the neutrals before reaching the spacecraft location and that they had undergone acceleration along electric fields, not necessarily limited to acceleration along ambipolar electric fields in the radial direction. For the limited time period studied, we see indications that at increasing distances from the nucleus, the fraction of the ions' kinetic energy associated with radial drift motion is decreasing.

Cloning and expression of Clostridium perfringens type D vaccine strain epsilon toxin gene in E. coli as a recombinant vaccine candidate.

PubMed

Aziminia, Parastoo; Pilehchian-Langroudi, Reza; Esmaeilnia, Kasra

2016-08-01

Clostridium perfringens, a Gram-positive obligate anaerobic bacterium, is able to form resistant spores which are widely distributed in the environment. C. perfringens is subdivided into five types A to E based on its four major alpha, beta, epsilon and iota toxins. The aim of the present study was cloning and expression of C. perfringens type D vaccine strain epsilon toxin gene. Genomic DNA was extracted and the epsilon toxin gene was amplified using Pfu DNA polymerase. The PCR product was cloned into pJET1.2/blunt cloning vector. The recombinant vector (pJETε) was sequenced using universal primers. At the next step epsilon toxin gene was subcloned into pET22b(+) expression vector and transformed into E. coli Rosetta (DE3) host strain. The recombinant protein has been expressed in E. coli Rosetta (DE3) cells after subcloning of C. perfringens etx gene (1008 bp) into the expression vector. We concluded that E. coli Rosetta strain was suitable for the expression of recombinant C. perfringens epsilon toxin protein from pET22ε expression vector. This recombinant cell can be used for further research on recombinant vaccine development.

Archiving for Rosetta: Lessons for IPDA

NASA Astrophysics Data System (ADS)

Heather, David

The Rosetta Project is unusual, possibly unique, in that all data must be archived both in NASA's Planetary Data System (PDS), and in ESA's Planetary Science Archive (PSA), ac-cording to an inter-agency agreement that predates the existence of ESA's PSA. This requires that all data are formatted according to NASA's PDS3 Standards. Scientific peer reviews of the data content for Rosetta have been carried out both in the US and in Europe and there was a very large overlap of the issues raised, illustrating the general scientific agreement, independent of geography, in what an archive must contain to be useful to the broader community of planetary scientists. However, validation of the data against the PDS Standards using both PSA and PDS devel-oped software has led to the discovery that many of the items that are validated are unstated assumptions in the written PDS Standards and are related, at least in large part, to how the two archiving systems operate rather than to the actual content that a scientist needs to use the data. The talk will illustrate some of these discrepancies with examples and suggest how to avoid such issues in future, optimizing the scientific return on the investment in archiving while minimizing the costs.

Diurnal and seasonal variations of gas emissions in the inner coma of comet 67P/Churyumov-Gerasimenko observed with OSIRIS/Rosetta

NASA Astrophysics Data System (ADS)

La Forgia, F.; Lazzarin, M.; Bodewits, D.; A'Hearn, M. F.; Bertini, I.; Penasa, L.; Naletto, G.; Cremonese, G.; Massironi, M.; Ferri, F.; Frattin, E.; Lucchetti, A.; Ferrari, S.; Barbieri, C.

2017-09-01

The gas filters of OSIRIS/Wide Angle Camera (WAC) on board Rosetta spacecraft allowed to study the gaseous emissions of the inner coma of comet 67P/Churyumov-Gerasimenko. OH, NH, CN, NH2 and OI gas species have been monitored between January and September 2015, i.e. from 2.47 AU pre-perihelion, to 1.37 AU post-perihelion, allowing the study of seasonal variations. Each gas sequence covers slightly more than one comet rotation period allowing also the study of diurnal changes. We measured the gas column density between 1 and 3 km from the nucleus limb in the sunward direction. Results will be presented on the gas diurnal light curves and on the long-term variations such as the dependence and correlation with time, heliocentric distance, range, phase angle and sub-solar point. Gas ratios are studied searching for evidence of any compositional change with time and orbital evolution. We searched for connections between particular "active zones" on the nucleus surface. This study will be helpful in connecting ground based observations of 67P with Rosetta in situ observations.

Ion acoustic waves at comet 67P/Churyumov-Gerasimenko. Observations and computations

NASA Astrophysics Data System (ADS)

Gunell, H.; Nilsson, H.; Hamrin, M.; Eriksson, A.; Odelstad, E.; Maggiolo, R.; Henri, P.; Vallieres, X.; Altwegg, K.; Tzou, C.-Y.; Rubin, M.; Glassmeier, K.-H.; Stenberg Wieser, G.; Simon Wedlund, C.; De Keyser, J.; Dhooghe, F.; Cessateur, G.; Gibbons, A.

2017-04-01

Context. On 20 January 2015 the Rosetta spacecraft was at a heliocentric distance of 2.5 AU, accompanying comet 67P/Churyumov-Gerasimenko on its journey toward the Sun. The Ion Composition Analyser (RPC-ICA), other instruments of the Rosetta Plasma Consortium, and the ROSINA instrument made observations relevant to the generation of plasma waves in the cometary environment. Aims: Observations of plasma waves by the Rosetta Plasma Consortium Langmuir probe (RPC-LAP) can be explained by dispersion relations calculated based on measurements of ions by the Rosetta Plasma Consortium Ion Composition Analyser (RPC-ICA), and this gives insight into the relationship between plasma phenomena and the neutral coma, which is observed by the Comet Pressure Sensor of the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis instrument (ROSINA-COPS). Methods: We use the simple pole expansion technique to compute dispersion relations for waves on ion timescales based on the observed ion distribution functions. These dispersion relations are then compared to the waves that are observed. Data from the instruments RPC-LAP, RPC-ICA and the mutual impedance probe (RPC-MIP) are compared to find the best estimate of the plasma density. Results: We find that ion acoustic waves are present in the plasma at comet 67P/Churyumov-Gerasimenko, where the major ion species is H2O+. The bulk of the ion distribution is cold, kBTI = 0.01 eV when the ion acoustic waves are observed. At times when the neutral density is high, ions are heated through acceleration by the solar wind electric field and scattered in collisions with the neutrals. This process heats the ions to about 1 eV, which leads to significant damping of the ion acoustic waves. Conclusions: In conclusion, we show that ion acoustic waves appear in the H2O+ plasmas at comet 67P/Churyumov-Gerasimenko and how the interaction between the neutral and ion populations affects the wave properties. Computer code for the dispersion analysis is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/600/A3

GIADA On-Board Rosetta: Early Dust Grain Detections and Dust Coma Characterization of Comet 67P/C-G

NASA Astrophysics Data System (ADS)

Rotundi, A.; Della Corte, V.; Accolla, M.; Ferrari, M.; Ivanovski, S.; Lucarelli, F.; Mazzotta Epifani, E.; Sordini, R.; Palumbo, P.; Colangeli, L.; Lopez-Moreno, J. J.; Rodriguez, J.; Fulle, M.; Bussoletti, E.; Crifo, J. F.; Esposito, F.; Green, S.; Grün, E.; Lamy, P. L.; McDonnell, T.; Mennella, V.; Molina, A.; Moreno, F.; Ortiz, J. L.; Palomba, E.; Perrin, J. M.; Rodrigo, R.; Weissman, P. R.; Zakharov, V.; Zarnecki, J.

2014-12-01

GIADA (Grain Impact Analyzer and Dust Accumulator) flying on-board Rosetta is devoted to study the cometary dust environment of 67P/Churiumov-Gerasimenko. GIADA is composed of 3 sub-systems: the GDS (Grain Detection System), based on grain detection through light scattering; an IS (Impact Sensor), giving momentum measurement detecting the impact on a sensed plate connected with 5 piezoelectric sensors; the MBS (MicroBalances System), constituted of 5 Quartz Crystal Microbalances (QCMs), giving cumulative deposited dust mass by measuring the variations of the sensors' frequency. The combination of the measurements performed by these 3 subsystems provides: the number, the mass, the momentum and the velocity distribution of dust grains emitted from the cometary nucleus.No prior in situ dust dynamical measurements at these close distances from the nucleus and starting from such large heliocentric distances are available up to date. We present here the first results obtained from the beginning of the Rosetta scientific phase. We will report dust grains early detection at about 800 km from the nucleus in August 2014 and the following measurements that allowed us characterizing the 67P/C-G dust environment at distances less than 100 km from the nucleus and single grains dynamical properties. Acknowledgements. GIADA was built by a consortium led by the Univ. Napoli "Parthenope" & INAF-Oss. Astr. Capodimonte, IT, in collaboration with the Inst. de Astrofisica de Andalucia, ES, Selex-ES s.p.a. and SENER. GIADA is presently managed & operated by Ist. di Astrofisica e Planetologia Spaziali-INAF, IT. GIADA was funded and managed by the Agenzia Spaziale Italiana, IT, with a support of the Spanish Ministry of Education and Science MEC, ES. GIADA was developped from a PI proposal supported by the University of Kent; sci. & tech. contribution given by CISAS, IT, Lab. d'Astr. Spat., FR, and Institutions from UK, IT, FR, DE and USA. We thank the RSGS/ESAC, RMOC/ESOC & Rosetta Project/ESTEC for their outstanding work. Science support provided by NASA through the US Rosetta Project managed by JPL/California Institute of Technology. GIADA calibrated data will be available through the ESA's PSA web site (www.rssd.esa.int/index.php?project=PSA&page=index). Thanks Angioletta.

Extracting patterns of database and software usage from the bioinformatics literature

PubMed Central

Duck, Geraint; Nenadic, Goran; Brass, Andy; Robertson, David L.; Stevens, Robert

2014-01-01

Motivation: As a natural consequence of being a computer-based discipline, bioinformatics has a strong focus on database and software development, but the volume and variety of resources are growing at unprecedented rates. An audit of database and software usage patterns could help provide an overview of developments in bioinformatics and community common practice, and comparing the links between resources through time could demonstrate both the persistence of existing software and the emergence of new tools. Results: We study the connections between bioinformatics resources and construct networks of database and software usage patterns, based on resource co-occurrence, that correspond to snapshots of common practice in the bioinformatics community. We apply our approach to pairings of phylogenetics software reported in the literature and argue that these could provide a stepping stone into the identification of scientific best practice. Availability and implementation: The extracted resource data, the scripts used for network generation and the resulting networks are available at http://bionerds.sourceforge.net/networks/ Contact: robert.stevens@manchester.ac.uk PMID:25161253

Meta-Analysis of Stenting versus Non-Stenting for the Treatment of Ureteral Stones

PubMed Central

Wang, Hai; Man, Libo; Li, Guizhong; Huang, Guanglin; Liu, Ning; Wang, Jianwei

2017-01-01

Background and aim Ureteroscopic lithotripsy (URL) and extracorporeal shock wave lithotripsy (ESWL) are two widely used methods for the treatment of ureteral stones. The need for ureteral stenting during these procedures is controversial. In this meta-analysis, we evaluated the benefits and disadvantages of ureteral stents for the treatment of ureteral stones. Methods Databases including PubMed, Embase and Cochrane library were selected for systematic review of randomized controlled trials (RCTs) comparing outcomes with or without stenting during URL and ESWL. Meta-analysis was performed using RevMan 5.3 and STATA 13.0 software. Results We identified 22 RCTs comparing stenting and non-stenting. The stented group was associated with longer operation time (WMD: 4.93; 95% CI: 2.07 to 7.84; p < 0.001), lower stone-free rate (OR: 0.55; 95% CI: 0.34 to 0.89; p = 0.01). In terms of complications, the incidence of hematuria (OR: 3.68; 95% CI: 1.86 to 7.29; p < 0.001), irritative urinary symptoms (OR: 4.40; 95% CI: 2.19 to 9.10; p < 0.001), urinary infection (OR: 2.23; 95% CI: 1.57 to 3.19; p < 0.001), and dysuria (OR: 3.90; 95% CI: 2.51 to 6.07; p < 0.001) were significantly higher in the stented group. No significant differences in visual analogue score (VAS), stricture formation, fever, or hospital stay were found between stenting and non-stenting groups. The risk of unplanned readmissions (OR: 0.63; 95% CI: 0.41 to 0.97; p = 0.04) was higher in the non-stented group. Conclusions Our analysis showed that stenting failed to improve the stone-free rate, and instead, it resulted in additional complications. However, ureteral stents are valuable in preventing unplanned re-hospitalization. Additional randomized controlled trials are still required to corroborate our findings. PMID:28068364

Rationale and Design of the Registry for Stones of the Kidney and Ureter (ReSKU): A Prospective Observational Registry to Study the Natural History of Urolithiasis Patients

PubMed Central

Chang, Helena C.; Tzou, David T.; Usawachintachit, Manint; Duty, Brian D.; Hsi, Ryan S.; Harper, Jonathan D.; Sorensen, Mathew D.; Stoller, Marshall L.; Sur, Roger L.

2016-01-01

Abstract Objectives: Registry-based clinical research in nephrolithiasis is critical to advancing quality in urinary stone disease management and ultimately reducing stone recurrence. A need exists to develop Health Insurance Portability and Accountability Act (HIPAA)-compliant registries that comprise integrated electronic health record (EHR) data using prospectively defined variables. An EHR-based standardized patient database—the Registry for Stones of the Kidney and Ureter (ReSKU™)—was developed, and herein we describe our implementation outcomes. Materials and Methods: Interviews with academic and community endourologists in the United States, Canada, China, and Japan identified demographic, intraoperative, and perioperative variables to populate our registry. Variables were incorporated into a HIPAA-compliant Research Electronic Data Capture database linked to text prompts and registration data within the Epic EHR platform. Specific data collection instruments supporting New patient, Surgery, Postoperative, and Follow-up clinical encounters were created within Epic to facilitate automated data extraction into ReSKU. Results: The number of variables within each instrument includes the following: New patient—60, Surgery—80, Postoperative—64, and Follow-up—64. With manual data entry, the mean times to complete each of the clinic-based instruments were (minutes) as follows: New patient—12.06 ± 2.30, Postoperative—7.18 ± 1.02, and Follow-up—8.10 ± 0.58. These times were significantly reduced with the use of ReSKU structured clinic note templates to the following: New patient—4.09 ± 1.73, Postoperative—1.41 ± 0.41, and Follow-up—0.79 ± 0.38. With automated data extraction from Epic, manual entry is obviated. Conclusions: ReSKU is a longitudinal prospective nephrolithiasis registry that integrates EHR data, lowering the barriers to performing high quality clinical research and quality outcome assessments in urinary stone disease. PMID:27758162

The Accuracy and Prognostic Value of Point-of-care Ultrasound for Nephrolithiasis in the Emergency Department: A Systematic Review and Meta-analysis.

PubMed

Wong, Charles; Teitge, Braden; Ross, Marshall; Young, Paul; Robertson, Helen Lee; Lang, Eddy

2018-06-01

Point-of-care ultrasound (POCUS) has been suggested as an initial investigation in the management of renal colic. Our objectives were: 1) to determine the accuracy of POCUS for the diagnosis of nephrolithiasis and 2) to assess its prognostic value in the management of renal colic. The review protocol was registered to the PROSPERO database (CRD42016035331). An electronic database search of MEDLINE, Embase, and PubMed was conducted utilizing subject headings, keywords, and synonyms that address our research question. Bibliographies of included studies and narrative reviews were manually examined. Studies of adult emergency department patients with renal colic symptoms were included. Any degree of hydronephrosis was considered a positive POCUS finding. Accepted criterion standards were computed tomography evidence of renal stone or hydronephrosis, direct stone visualization, or surgical findings. Screening of abstracts, quality assessment with the QUADAS-2 instrument, and data extraction were performed by two reviewers, with discrepancies resolved by consensus with a third reviewer. Test performance was assessed by pooled sensitivity and specificity, calculated likelihood ratios, and a summary receiver operator curve (SROC). The secondary objective of prognostic value was reported as a narrative summary. The electronic search yielded 627 unique titles. After relevance screening, 26 papers underwent full-text review, and nine articles met all inclusion criteria. Of these, five high-quality studies (N = 1,773) were included in the meta-analysis for diagnostic accuracy and the remaining yielded data on prognostic value. The pooled results for sensitivity and specificity were 70.2% (95% confidence interval [CI] = 67.1%-73.2%) and 75.4% (95% CI = 72.5%-78.2%), respectively. The calculated positive and negative likelihood ratios were 2.85 and 0.39. The SROC generated did not show evidence of a threshold effect. Two of the studies in the meta-analysis found that the finding of moderate or greater hydronephrosis yielded a specificity of 94.4% (95% CI = 92.7%-95.8%). Four studies examining prognostic value noted a higher likelihood of a large stone when positive POCUS findings were present. The largest randomized trial showed lower cumulative radiation exposure and no increase in adverse events in those who received POCUS investigation as the initial renal colic investigation. Point-of-care ultrasound has modest diagnostic accuracy for diagnosing nephrolithiasis. The finding of moderate or severe hydronephrosis is highly specific for the presence of any stone, and the presence of any hydronephrosis is suggestive of a larger (>5 mm) stone in those presenting with renal colic. © 2018 by the Society for Academic Emergency Medicine.

Revision of Eocene Antarctic carpet sharks (Elasmobranchii, Orectolobiformes) from Seymour Island, Antarctic Peninsula.

PubMed

Engelbrecht, Andrea; Mörs, Thomas; Reguero, Marcelo A; Kriwet, Jürgen

2017-01-01

Seymour Island, Antarctic Peninsula, was once called the 'Rosetta Stone' of Southern Hemisphere palaeobiology, because this small island provides the most complete and richly fossiliferous Palaeogene sequence in Antarctica. Among fossil marine vertebrate remains, chondrichthyans seemingly were dominant elements in the Eocene Antarctic fish fauna. The fossiliferous sediments on Seymour Island are from the La Meseta Formation, which was originally divided into seven stratigraphical levels, TELMs 1-7 (acronym for Tertiary Eocene La Meseta) ranging from the upper Ypresian (early Eocene) to the late Priabonian (late Eocene). Bulk sampling of unconsolidated sediments from TELMs 5 and 6, which are Ypresian (early Eocene) and Lutetian (middle Eocene) in age, respectively, yielded very rich and diverse chondrichthyan assemblages including over 40 teeth of carpet sharks representing two new taxa, Notoramphoscyllium woodwardi gen. et sp. nov. and Ceolometlaouia pannucae gen. et sp. nov. Two additional teeth from TELM 5 represent two different taxa that cannot be assigned to any specific taxon and thus are left in open nomenclature. The new material not only increases the diversity of Eocene Antarctic selachian faunas but also allows two previous orectolobiform records to be re-evaluated. Accordingly, Stegostoma cf. faciatum is synonymized with Notoramphoscyllium woodwardi gen. et sp. nov., whereas Pseudoginglymostoma cf. brevicaudatum represents a nomen dubium . The two new taxa, and probably the additional two unidentified taxa, are interpreted as permanent residents, which most likely were endemic to Antarctic waters during the Eocene and adapted to shallow and estuarine environments.

Feather regeneration as a model for organogenesis

PubMed Central

Lin, Sung-Jan; Wideliz, Randall B; Yue, Zhicao; Li, Ang; Wu, Xiaoshan; Jiang, Ting-Xin; Wu, Ping; Chuong, Cheng-Ming

2013-01-01

In the process of organogenesis, different cell types form organized tissues and tissues are integrated into an organ. Most organs form in the developmental stage, but new organs can also form in physiological states or following injuries during adulthood. Feathers are a good model to study post-natal organogenesis because they regenerate episodically under physiological conditions and in response to injuries such as plucking. Epidermal stem cells in the collar can respond to activation signals. Dermal papilla located at the follicle base controls the regenerative process. Adhesion molecules (e.g., NCAM, tenascin), morphogens (e.g., Wnt3a, sprouty, FGF10), and differentiation markers (e.g., keratins) are expressed dynamically in initiation, growth and resting phases of the feather cycle. Epidermal cells are shaped into different feather morphologies based on the molecular micro-environment at the moment of morphogenesis. Chicken feather variants provide a rich resource for us to identify genetic determinants involved in feather regeneration and morphogenesis. An example of using genome-wide SNP analysis to identify alpha keratin 75 as the mutation in frizzled chickens is demonstrated. Due to its accessibility to experimental manipulation and observation, results of regeneration can be analyzed in a comprehensive way. The layout of time dimension along the distal (formed earlier) - proximal (formed later) feather axis makes the morphological analyses easier. Therefore feather regeneration can be a unique model for understanding organogenesis: from activation of stems cell under various physiological conditions to serving as the Rosetta stone for deciphering the language of morphogenesis. PMID:23294361

Rosetta Structure Prediction as a Tool for Solving Difficult Molecular Replacement Problems.

PubMed

DiMaio, Frank

2017-01-01

Molecular replacement (MR), a method for solving the crystallographic phase problem using phases derived from a model of the target structure, has proven extremely valuable, accounting for the vast majority of structures solved by X-ray crystallography. However, when the resolution of data is low, or the starting model is very dissimilar to the target protein, solving structures via molecular replacement may be very challenging. In recent years, protein structure prediction methodology has emerged as a powerful tool in model building and model refinement for difficult molecular replacement problems. This chapter describes some of the tools available in Rosetta for model building and model refinement specifically geared toward difficult molecular replacement cases.

Small-molecule ligand docking into comparative models with Rosetta

PubMed Central

Combs, Steven A; DeLuca, Samuel L; DeLuca, Stephanie H; Lemmon, Gordon H; Nannemann, David P; Nguyen, Elizabeth D; Willis, Jordan R; Sheehan, Jonathan H; Meiler, Jens

2017-01-01

Structure-based drug design is frequently used to accelerate the development of small-molecule therapeutics. Although substantial progress has been made in X-ray crystallography and nuclear magnetic resonance (NMR) spectroscopy, the availability of high-resolution structures is limited owing to the frequent inability to crystallize or obtain sufficient NMR restraints for large or flexible proteins. Computational methods can be used to both predict unknown protein structures and model ligand interactions when experimental data are unavailable. This paper describes a comprehensive and detailed protocol using the Rosetta modeling suite to dock small-molecule ligands into comparative models. In the protocol presented here, we review the comparative modeling process, including sequence alignment, threading and loop building. Next, we cover docking a small-molecule ligand into the protein comparative model. In addition, we discuss criteria that can improve ligand docking into comparative models. Finally, and importantly, we present a strategy for assessing model quality. The entire protocol is presented on a single example selected solely for didactic purposes. The results are therefore not representative and do not replace benchmarks published elsewhere. We also provide an additional tutorial so that the user can gain hands-on experience in using Rosetta. The protocol should take 5–7 h, with additional time allocated for computer generation of models. PMID:23744289

MODEL-OBSERVATION COMPARISONS OF ELECTRON NUMBER DENSITIES IN THE COMA OF 67P/CHURYUMOV–GERASIMENKO DURING 2015 JANUARY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vigren, E.; Edberg, N. J. T.; Eriksson, A. I.

2016-09-01

During 2015 January 9–11, at a heliocentric distance of ∼2.58–2.57 au, the ESA Rosetta spacecraft resided at a cometocentric distance of ∼28 km from the nucleus of comet 67P/Churyumov–Gerasimenko, sweeping the terminator at northern latitudes of 43°N–58°N. Measurements by the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis/Comet Pressure Sensor (ROSINA/COPS) provided neutral number densities. We have computed modeled electron number densities using the neutral number densities as input into a Field Free Chemistry Free model, assuming H{sub 2}O dominance and ion-electron pair formation by photoionization only. A good agreement (typically within 25%) is found between the modeled electron numbermore » densities and those observed from measurements by the Mutual Impedance Probe (RPC/MIP) and the Langmuir Probe (RPC/LAP), both being subsystems of the Rosetta Plasma Consortium. This indicates that ions along the nucleus-spacecraft line were strongly coupled to the neutrals, moving radially outward with about the same speed. Such a statement, we propose, can be further tested by observations of H{sub 3}O{sup +}/H{sub 2}O{sup +} number density ratios and associated comparisons with model results.« less

The phase function and density of the dust observed at comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Fulle, Marco; Bertini, I.; Della Corte, V.; Güttler, C.; Ivanovski, S.; La Forgia, F.; Lasue, J.; Levasseur-Regourd, A. C.; Marzari, F.; Moreno, F.; Mottola, S.; Naletto, G.; Palumbo, P.; Rinaldi, G.; Rotundi, A.; Sierks, H.; Barbieri, C.; Lamy, P. L.; Rodrigo, R.; Koschny, D.; Rickman, H.; Barucci, M. A.; Bertaux, J.-L.; Bodewits, D.; Cremonese, G.; Da Deppo, V.; Davidsson, B.; Debei, S.; De Cecco, M.; Deller, J.; Fornasier, S.; Groussin, O.; Gutiérrez, P. J.; Hviid, H. S.; Ip, W. H.; Jorda, L.; Keller, H. U.; Knollenberg, J.; Kramm, J. R.; Kührt, E.; Küppers, M.; Lara, M. L.; Lazzarin, M.; López-Moreno, J. J.; Shi, X.; Thomas, N.; Tubiana, C.

2018-05-01

The OSIRIS camera onboard Rosetta measured the phase function of both the coma dust and the nucleus. The two functions have a very different slope versus the phase angle. Here, we show that the nucleus phase function should be adopted to convert the brightness to the size of dust particles larger than 2.5 mm only. This makes the dust bursts observed close to Rosetta by OSIRIS, occurring about every hour, consistent with the fragmentation on impact with Rosetta of parent particles, whose flux agrees with the dust flux observed by GIADA. OSIRIS also measured the antisunward acceleration of the fragments, thus providing the first direct measurement of the solar radiation force acting on the dust fragments and thus of their bulk density, excluding any measurable rocket effect by the ice sublimation from the dust. The obtained particle density distribution has a peak matching the bulk density of most COSIMA particles, and represents a subset of the density distribution measured by GIADA. This implies a bias in the elemental abundances measured by COSIMA, which thus are consistent with the 67P dust mass fractions inferred by GIADA, i.e. (38 ± 8) {per cent} of hydrocarbons versus the (62 ± 8) {per cent} of sulphides and silicates.

Combining Rosetta with molecular dynamics (MD): A benchmark of the MD-based ensemble protein design.

PubMed

Ludwiczak, Jan; Jarmula, Adam; Dunin-Horkawicz, Stanislaw

2018-07-01

Computational protein design is a set of procedures for computing amino acid sequences that will fold into a specified structure. Rosetta Design, a commonly used software for protein design, allows for the effective identification of sequences compatible with a given backbone structure, while molecular dynamics (MD) simulations can thoroughly sample near-native conformations. We benchmarked a procedure in which Rosetta design is started on MD-derived structural ensembles and showed that such a combined approach generates 20-30% more diverse sequences than currently available methods with only a slight increase in computation time. Importantly, the increase in diversity is achieved without a loss in the quality of the designed sequences assessed by their resemblance to natural sequences. We demonstrate that the MD-based procedure is also applicable to de novo design tasks started from backbone structures without any sequence information. In addition, we implemented a protocol that can be used to assess the stability of designed models and to select the best candidates for experimental validation. In sum our results demonstrate that the MD ensemble-based flexible backbone design can be a viable method for protein design, especially for tasks that require a large pool of diverse sequences. Copyright © 2018 Elsevier Inc. All rights reserved.

Spatial Variations of Spectral Properties of (21) Lutetia as Observed by OSIRIS/Rosetta

NASA Astrophysics Data System (ADS)

Leyrat, Cedric; Sierks, H.; Barbieri, C.; Barucci, A.; Da Deppo, V.; De Leon, J.; Fulchignoni, M.; Fornasier, S.; Groussin, O.; Hviid, S. F.; Jorda, L.; Keller, H. U.; La Forgia, F.; Lara, L.; Lazzarin, M.; Magrin, S.; Marchi, S.; Thomas, N.; Schroder, S. E.; OSIRIS Team

2010-10-01

On July 10, 2010, the Rosetta ESA/NASA spacecraft successfully flew by the asteroid (21) Lutetia, which becomes the largest asteroid observed by a space probe. The closest approach occurred at 15H45 UTC at a relative speed of 15km/s and a relative distance of 3160 km. The Narrow Angle Camera (NAC) and the Wide Angle Camera (WAC) of the OSIRIS instrument onboard Rosetta acquired images at different phase angles ranging from almost zero to more than 150 degrees. The best spatial resolution (60 m/pixel) allowed to reveal a very complex topography with several features and different crater's surface densities. Spectrophotometric analysis of the data could suggest spatial variations of the albedo and spectral properties at the surface of the asteroid, at least in the northern hemisphere. Numerous sets of data have been obtained at different wavelengths from 270nm to 980nm. We will first present a color-color analysis of data in order to locate landscapes where surface variegation is present. We will also present a more accurate study of spectral properties using the shape model and different statistical methods. Possible variations of the surface spectral properties with the slope of the ground and the gravity field orientation will be discussed as well.

The distribution of gas and ions in the inner coma of 67P/Churyumov-Gerasimenko between 3 AU before and after its perihelion

NASA Astrophysics Data System (ADS)

Bodewits, Dennis; Lara, Luisa; La Forgia, Fiorangela; A'Hearn, Michael F.; Knollenberg, Jörg; Lazzarin, Monica; Li, Zhong-Yi; Osiris Team

2016-10-01

Rosetta explored a regime not accessible before: the inner coma of a low-activity comet at a large range of heliocentric distances. The Wide Angle Camera (WAC) of the OSIRIS instrument on board the Rosetta spacecraft is equipped with several narrowband filters that are centered on the emission lines and bands of various molecules and ions. These filters center on fragment species that are relatively bright and that have been used for numerous comet studies from the ground (e.g. A'Hearn et al. 1995). Surprisingly, we found that outside 2 AU pre-perihelion, the emission in the filters was dominated by emission from dissociative electron impact excitation (Bodewits et al. 2016). Closer to perihelion, higher gas densities reduced electron temperatures in the inner coma and photo-processes drove much if not most of the emission from the comet. Our observations allowed us to study changes in the physical environment of the inner coma, and Rosetta's excursions as far as 1000 km from the surface allowed us to study different regions of the coma.In this contribution, we will summarize the results of our OSIRIS observations from approximately 3 AU before to 3 AU after perihelion.

The interior of 67P/C-G comet as seen by CONSERT bistatic radar on ROSETTA, key results and implications.

NASA Astrophysics Data System (ADS)

Kofman, W.; Herique, A.; Ciarletti, V.; Lasue, J.; Levasseur-Regourd, AC.; Zine, S.; Plettemeier, D.

2017-09-01

The structure of the nucleus is one of the major unknowns in cometary science. The scientific objectives of the Comet Nucleus Sounding Experiment by Radiowave Transmission (CONSERT) aboard ESA's spacecraft Rosetta are to perform an interior characterization of comet 67P/Churyumov-Gerasimenko nucleus. This is done by means of a bistatic sounding between the lander Philae laying on the comet's surface and the orbiter Rosetta. Current interpretation of the CONSERT signals is consistent with a highly porous carbon rich primitive body. Internal inhomogeneities are not detected at the wavelength scale and are either smaller, or present a low dielectric contrast. Given the high bulk porosity of 75% inside the sounded part of the nucleus, a likely interior model would be obtained by a mixture, at this 3-m size scale, of voids (vacuum) and blobs with material made of ices and dust with porosity larger than 60%. The absence of any pulse spreading due to scattering allows us to exclude heterogeneity with higher contrast (0.25) and larger size (3m) (but smaller than few wavelengths scale, since larger scales would be responsible for multipath propagation). CONSERT is the first successful radar probe to study the sub-surface of a small body.

FUV Spectral Signatures of Molecules and the Evolution of the Gaseous Coma of Comet 67P/Churyumov–Gerasimenko

NASA Astrophysics Data System (ADS)

Feldman, Paul D.; A’Hearn, Michael F.; Bertaux, Jean-Loup; Feaga, Lori M.; Keeney, Brian A.; Knight, Matthew M.; Noonan, John; Parker, Joel Wm.; Schindhelm, Eric; Steffl, Andrew J.; Stern, S. Alan; Vervack, Ronald J.; Weaver, Harold A.

2018-01-01

The Alice far-ultraviolet imaging spectrograph onboard Rosetta observed emissions from atomic and molecular species from within the coma of comet 67P/Churyumov–Gerasimenko during the entire escort phase of the mission from 2014 August to 2016 September. The initial observations showed that emissions of atomic hydrogen and oxygen close to the surface were produced by energetic electron impact dissociation of H2O. Following delivery of the lander, Philae, on 2014 November 12, the trajectory of Rosetta shifted to near-terminator orbits that allowed for these emissions to be observed against the shadowed nucleus that, together with the compositional heterogeneity, enabled us to identify unique spectral signatures of dissociative electron impact excitation of H2O, CO2, and O2. CO emissions were found to be due to both electron and photoexcitation processes. Thus, we are able, from far-ultraviolet spectroscopy, to qualitatively study the evolution of the primary molecular constituents of the gaseous coma from start to finish of the escort phase. Our results show asymmetric outgassing of H2O and CO2 about perihelion, H2O dominant before and CO2 dominant after, consistent with the results from both the in situ and other remote sensing instruments on Rosetta.

Minimally invasive PCNL-MIP.

PubMed

Zanetti, Stefano Paolo; Boeri, Luca; Gallioli, Andrea; Talso, Michele; Montanari, Emanuele

2017-01-01

Miniaturized percutaneous nephrolithotomy (mini-PCNL) has increased in popularity in recent years and is now widely used to overcome the therapeutic gap between conventional PCNL and less-invasive procedures such as shock wave lithotripsy (SWL) or flexible ureterorenoscopy (URS) for the treatment of renal stones. However, despite its minimally invasive nature, the superiority in terms of safety, as well as the similar efficacy of mini-PCNL compared to conventional procedures, is still under debate. The aim of this chapter is to present one of the most recent advancements in terms of mini-PCNL: the Karl Storz "minimally invasive PCNL" (MIP). A literature search for original and review articles either published or e-published up to December 2016 was performed using Google and the PubMed database. Keywords included: minimally invasive PCNL; MIP. The retrieved articles were gathered and examined. The complete MIP set is composed of different sized rigid metallic fiber-optic nephroscopes and different sized metallic operating sheaths, according to which the MIP is categorized into extra-small (XS), small (S), medium (M) and large (L). Dilation can be performed either in one-step or with a progressive technique, as needed. The reusable devices of the MIP and vacuum cleaner efect make PCNL with this set a cheap procedure. The possibility to shift from a small to a larger instrument within the same set (Matrioska technique) makes MIP a very versatile technique suitable for the treatment of almost any stone. Studies in the literature have shown that MIP is equally effective, with comparable rates of post-operative complications, as conventional PCNL, independently from stone size. MIP does not represent a new technique, but rather a combination of the last ten years of PCNL improvements in a single system that can transversally cover all available techniques in the panorama of percutaneous stone treatment.

Study of the coma of comet 67P/Churyumov-Gerasimenko based on the ROSINA/RTOF instrument onboard Rosetta

NASA Astrophysics Data System (ADS)

Hoang, M.; Garnier, P.; Lasue, J.; Reme, H.; Altwegg, K.; Balsiger, H. R.; Bieler, A. M.; Calmonte, U.; Fiethe, B.; Galli, A.; Gasc, S.; Gombosi, T. I.; Jäckel, A.; Mall, U.; Le Roy, L.; Rubin, M.; Tzou, C. Y.; Waite, J. H., Jr.; Wurz, P.

2015-12-01

The ROSETTA spacecraft of ESA is in the environment of comet 67P/Churyumov-Gerasimenko since August 2014. Among the experiments onboard the spacecraft, the ROSINA experiment (Rosetta Orbiter Spectrometer for Ion and Neutral Analysis) includes two mass spectrometers (DFMS and RTOF) to analyze the composition of neutrals and ions, and a pressure sensor (COPS) to monitor the density and velocity of neutrals in the coma [1]. We will here analyze and discuss the data of the ROSINA/RTOF instrument during the comet escort phase. The Reflectron-type Time-Of-Flight (RTOF) mass spectrometer possesses a wide mass range and a high temporal resolution [1,2]. It was designed to measure cometary neutral gas as well as cometary ions. A detailed description of the main volatiles (H2O, CO2, CO) dynamics and of the heterogeneities of the coma will then be provided. The influence of various parameters on the coma measurements is investigated on a statistical basis, with the parameters being distance to the comet, heliocentric distance, longitude and latitude of nadir point. Our analysis of the northern hemisphere summer season shows the presence of water vapor mostly in the illuminated northern hemisphere near the neck region with cyclic diurnal variations whereas CO2 was confined to the cold southern hemisphere with a more spatially homogeneous composition, in agreement with previous observations of 67P [2] or Hartley 2 [3]. A comparison will also be provided with the COPS total density and DFMS abundance measurements. [1] Balsiger et al., "ROSINA - Rosetta Orbiter Spectrometer for Ion and Neutral Analysis", Space Sci. Rev., 2007. [2] Scherer et al., "A novel principle for an ion mirror design in time-of-flight mass spectrometry," Int. Jou. Mass Spectr., 2006. [3] Hässig et al., "Time variability and heterogeneity in the coma of 67P/Churyumov-Gerasimenko", Science, 2015. [4] A'Hearn et al., "EPOXI at comet Hartley 2", Science, 2011.

Rosetta mission operations for landing

NASA Astrophysics Data System (ADS)

Accomazzo, Andrea; Lodiot, Sylvain; Companys, Vicente

2016-08-01

The International Rosetta Mission of the European Space Agency (ESA) was launched on 2nd March 2004 on its 10 year journey to comet Churyumov-Gerasimenko and has reached it early August 2014. The main mission objectives were to perform close observations of the comet nucleus throughout its orbit around the Sun and deliver the lander Philae to its surface. This paper describers the activities at mission operations level that allowed the landing of Philae. The landing preparation phase was mainly characterised by the definition of the landing selection process, to which several parties contributed, and by the definition of the strategy for comet characterisation, the orbital strategy for lander delivery, and the definition and validation of the operations timeline. The definition of the landing site selection process involved almost all components of the mission team; Rosetta has been the first, and so far only mission, that could not rely on data collected by previous missions for the landing site selection. This forced the teams to include an intensive observation campaign as a mandatory part of the process; several science teams actively contributed to this campaign thus making results from science observations part of the mandatory operational products. The time allocated to the comet characterisation phase was in the order of a few weeks and all the processes, tools, and interfaces required an extensive planning an validation. Being the descent of Philae purely ballistic, the main driver for the orbital strategy was the capability to accurately control the position and velocity of Rosetta at Philae's separation. The resulting operations timeline had to merge this need of frequent orbit determination and control with the complexity of the ground segment and the inherent risk of problems when doing critical activities in short times. This paper describes the contribution of the Mission Control Centre (MOC) at the European Space Operations Centre (ESOC) to this mission phase and the lessons learned that can be derived from this experience.

Major achievements of the Rosetta mission in connection with the origin of the solar system

NASA Astrophysics Data System (ADS)

Barucci, M. A.; Fulchignoni, M.

2017-10-01

Comets have been studied from a long time and are believed to preserve pristine materials, so they are fundamental to understand the origin of the solar system and life. Starting in the early 1990s, ESA decided to have a more risky and fantastic mission to a comet. As Planetary Cornerstone mission of the ESA Horizon 2000 program, the Rosetta mission was selected with the aim of realizing two asteroid fly-bys, a rendezvous with a comet to deliver a surface science package and to hover around the comet from 4 AU inbound up to perihelion and outbound back to 3.7 AU. The mission was successfully launched on March 2, 2004 with Ariane V that started its 10-year journey toward comet 67P/Churyumov-Gerasimenko. After several planetary gravity assists, Rosetta flew by two asteroids—on September 5, 2008 (Steins) and on July 10, 2010 (Lutetia), respectively, and performed the comet orbit insertion maneuver on August 6, 2014. The onboard instruments characterized the nucleus orbiting the comet at altitudes down to few kilometers. On November 12, 2014, the lander Philae was delivered realizing the first landing ever on a comet surface. Although the exploration of the comet was planned up to the end of 2015, the mission duration was extended for nine more months than the nominal one, to follow the comet on its outbound orbit. To terminate the mission, following a series of very low orbits, a controlled impact of Rosetta spacecraft with the comet was realized on September 30, 2016. The scientific objectives of the mission have been largely achieved. The challenging mission provided the science community with an enormous quantity of data of extraordinary scientific value. In this paper, a detailed description of the mission and the highlights of the obtained scientific results on the exploration of an extraordinary world are presented. The paper also includes lessons learned and directions for the future.

How well do you know The Earth, Asteroids, Comets?

NASA Astrophysics Data System (ADS)

Alexander, C. J.; Lopez, J.; Barkus, R. C.; Angrum, A.

2011-12-01

The U.S. Rosetta Project is the NASA contribution to the International Rosetta Mission, an ESA cornerstone mission. The mission will arrive at its target, comet 67 P/Churyumov-Gerasimenko, in 2014, and escort the comet around the Sun for the ensuing 17 months. Along the way, the mission has encountered two asteroids: 21/Lutetia, and 2867/Steins, and enjoyed gravity assists at Mars and several at the Earth. The challenge for outreach coordinators is to convey the excitement of the mission, the manner in which its experiments gather and interpret data, provide context for those interpretations, all in an engaging fashion, without heavy use of camera images -- the camera not being among the NASA contributed instruments. In other words, because the US Rosetta Project expects to present the data and results from: an ultraviolet spectrometer, a plasma instrument, and a microwave spectrometer, outreach is presented with the special challenges of engaging the public in data which at least visually is less accessible than that of camera images. The project has turned to online games, interactive simulations, animated cartoons, and virtual labs to provide a visually stimulating way to explain: how scientists determine the age of asteroids; the context of a timeline of Earth geologic history with which to understand the relative position of the ages of any given asteroid to some event on Earth; a model of the solar system that goes from our Sun to the next Star to understand the spatial distances covered by comets in their journey around the Sun; and a model of early solar system evolution in which to understand the possible scenarios of solar system evolution that comets can help us sort out. In this paper we will present these simulations, even if some of them remain in the beta-development phase at the time of the meeting itself. Work at the Jet Propulsion Laboratory, California Institute of Technology, was supported by NASA. Rosetta is a joint collaboration between NASA and the European Space Agency.

Coma dust environment observed by GIADA during the Perihelion of 67P/Churyumov-Gerasimenko.

NASA Astrophysics Data System (ADS)

Rotundi, A.; Della Corte, V.; Fulle, M.; Ferrari, M.; Ivanovski, S. L.; Sordini, R.; Mazzotta Epifani, E.; Palumbo, P.; Colangeli, L.; Lopez-Moreno, J. J.; Rodriguez, J.; Zakharov, V.; Bussoletti, E.; Crifo, J. F.; Esposito, F.; Green, S.; Gruen, E.; Lamy, P. L.; McDonnell, T.; Mennella, V.; Molina, A.; Moreno, F.; Ortiz, J. L.; Palomba, E.; Perrin, J. M.; Rodrigo, R.; Weissman, P. R.; Zarnecki, J.; Cosi, M.; Giovane, F.; Gustafson, B.; Herranz, M.; Jeronimo, J. M.; Leese, M.; Lopez-Jimenez, A.; Morales, R.

2015-12-01

GIADA (Grain Impact Analyzer and Dust Accumulator) is an in-situ instrument mounted onboard Rosetta monitoring the dust environment of comet 67P/Churyumov-Gerasimenko. GIADA is composed of 3 sub-systems: 1) the Grain Detection System, based on particle detection through light scattering; 2) the Impact Sensor, giving momentum measurement; 3) the Micro-Balances System, constituted of 5 quartz crystal microbalances, giving cumulative deposited dust. The combination of the measurements performed by these 3 subsystems provides: the number, the mass, the momentum and the speed distribution of dust particles emitted from the comet nucleus. We will present the coma dust environment as observed by GIADA during the perihelion phase of the Rosetta space mission. Despite the large distance from the nucleus, more than 200 km, GIADA was able to detect temporal and spatial variation of dust density distribution. Specific high dust spatial density sectors of the coma have been identified and their evolution during the perihelion phase was studied. Acknowledgements. GIADA was built by a consortium led by the Univ. Napoli "Parthenope" & INAF- Oss. Astr. Capodimonte, IT, in collaboration with the Inst. de Astrofisica de Andalucia, ES, Selex-ES s.p.a. and SENER. GIADA is presently managed & operated by Ist. di Astrofisica e Planetologia Spaziali-INAF, IT. GIADA was funded and managed by the Agenzia Spaziale Italiana, IT, with a support of the Spanish Ministry of Education and Science MEC, ES. GIADA was developped from a PI proposal supported by the University of Kent; sci. & tech. contribution given by CISAS, IT, Lab. d'Astr. Spat., FR, and Institutions from UK, IT, FR, DE and USA. We thank the RSGS/ESAC, RMOC/ESOC & Rosetta Project/ESTEC for their outstanding work. Science support provided by NASA through the US Rosetta Project managed by JPL/California Institute of Technology. GIADA calibrated data will be available through the ESA's PSA web site.

Sensitivity and fragmentation calibration of the time-of-flight mass spectrometer RTOF on board ESA's Rosetta mission

NASA Astrophysics Data System (ADS)

Gasc, Sébastien; Altwegg, Kathrin; Jäckel, Annette; Le Roy, Léna; Rubin, Martin; Fiethe, Björn; Mall, Urs; Rème, Henri

2014-05-01

The European Space Agency's Rosetta mission will rendez-vous comet 67P/Churyumov-Gerasimenko (67P) in September 2014. The Rosetta spacecraft with the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) onboard will follow and survey 67P for more than a year until the comet reaches its perihelion and beyond. ROSINA will provide new information on the global molecular, elemental, and isotopic composition of the coma [1]. ROSINA consists of a pressure sensor (COPS) and two mass spectrometers, the Double Focusing Mass Spectrometer (DFMS) and the Reflectron Time Of Flight mass spectrometer (RTOF). RTOF has a wide mass range, from 1 amu/e to >300 amu/e, and contains two ion sources, a reflectron and two detectors. The two ion sources, the orthogonal and the storage source, are capable to measure cometary ions while the latter also allows measuring cometary neutral gas. In neutral gas mode the ionization is performed through electron impact. A built-in Gas Calibration Unit (GCU) contains a known gas mixture composed of He, CO2, and Kr that can be used for in-flight calibration of the instrument. Among other ROSINA specific scientific goals, RTOF's task will be to determine molecular composition of volatiles via measuring and separating heavy hydrocarbons; it has been designed to study the development of the cometary activity as well as the coma chemistry between 3.5 AU and perihelion. From the spectroscopic studies and in-situ observations of other comets, we expect to find molecules such as H2O, CO, CO2, hydrocarbons, alcohols, formaldehyde, and other organic compounds in the coma of 67P/Churyumov-Gerasimenko [2]. To demonstrate and quantify the sensitivity and functionality of RTOF, calibration measurements have been realized with more than 20 species among the most abundant molecules quoted above, as well as other species such as PAHs. We will describe the applied methods used to realize this calibration and will discuss our preliminary results, i.e. RTOF capabilities in terms of sensitivity, isotopic ratios, and fragmentation patterns. We will demonstrate that RTOF is well capable to meet the requirements to address the scientific questions discussed above. [1] Balsiger, H. et al.: ROSINA-Rosetta Orbiter Spectrometer for Ion and Neutral Analysis, Space Science Reviews, Vol. 128, 745-801, 2007. [2] Bockelée-Morvan, D., Crovisier, J., Mumma, M. J., and Weaver, H. A.: The Composition of Cometary Volatiles, in Comets II (M. C. Festou et al., eds), Univ. Arizona Press, Tucson, 2004

Comet 67P Through the Lens of Art

NASA Astrophysics Data System (ADS)

Smirnova, Ekaterina

2017-04-01

My proposal is to share my artistic exploration of a comet through the bodily senses, while finding inspiration in scientific data. I will present my artwork as a slideshow, showcasing: large scale paintings, ceramic sculptures, music and interactive augmented reality. The Rosetta mission of the European Space Agency (ESA) to comet 67P/ Churyumov-Gerasimenko is remarkable. The scientific investigation of the comet's composition, atmosphere, dust, vapor, surface and internal structure are crucial to help researchers understand the origin of the solar system and our own planet. Sight: Paintings Rosetta mission discovered that the water on the comet is different from the water on Earth; as measured with the ROSINA-DFMS instrument on Rosetta, water on 67P contains approximately 3 times more hydrogen­deuterium oxide - HDO, than found in Earth's oceans. In the art studio I re-create water that is close in composition to the water on the comet, by concentrating the level of HDO. With this water I paint large scale watermedia paintings, based on the photographs by Rosetta (OSIRIS, Nav. Cam.). Touch: Sculptures While exploring the comet's three-dimensional form, I focus more deeply on the composition of the comet. Stoneware clay and my choice of a glaze both include iron oxide, a common constituent of meteorites and comets. Hearing: Music An audio piece "A Singing Comet", by Manuel Senfft, based on the Rosetta Plasma Consortium data, inspired me to make a musical piece. In collaboration with clarinetist Lee Mottram (Wales) and composer Takuto Fukuda (Japan) we created an electro­acoustic composition in which we tell the story of comets visiting our Solar System, repeating their cycle, curving around the sun and releasing water, carrying away dust to form their tails. Smell In collaboration with The Open University, UK, postcards with a smell of the comet were created, introducing the chemical components of the comet. The smell was recreated by combining several molecules that were found in the comet's coma with the ROSINA instrument: in particular, hydrogen cyanide, ammonia and hydrogen sulphide. Interactive: Augmented Reality (AR) Inspired by spectroscopic data from OSIRIS, I introduce AR to reveal a "hidden" layer. I am highlighting that some scientific information can only be viewed by using special instruments, in this case - instruments on board the Rosetta spacecraft. Viewers can see a virtual layer on top of my paintings using a readily available instrument - ones cellphone. RGB colors, of a particular wavelength, will be introduced to the generally monochromatic paintings. Through my art I study the relationship between humans and the Universe, understanding the connection, the influence and the effect they have on each other. ESA's example of human scientists ambitiously exploring a distant cosmic object empowers me to create and share my personal exploration. This is the way I would like to share comet 67P with the world. I invite you to look through an artist's eyes and see science with renewed beauty and wonder. To view the artwork: http://www.ekaterina-smirnova.com/67p/ http://www.ekaterina-smirnova.com/67p-sculptures/

Regolith Properties of Asteroid 21 Lutetia Constrained by Combined Data Sets of the MIRO and VIRTIS Instruments During the Rosetta Spacecraft Flyby

NASA Technical Reports Server (NTRS)

Keihm, S.; Tosi, F.; Kamp, L.; Capaccioni, F.; Grassi, D.; Gulkis, S.; Coradini, A.

2011-01-01

During the July 10, 2010 flyby of Asteroid 21 Lutetia by the Rosetta spacecraft, maps of surface and subsurface temperatures were derived from the VIRTIS and MIRO instruments respectively. Both data sets indicated a porous surface layer with an extremely low, lunar-like thermal inertia. However, comparisons of the VIRTIS-measured and MIRO-modelled surface temperatures revealed offsets of 10- 30 K, indicative of self-heating or "beaming" effects that were not taken into account in the MIRO thermal modeling. Inclusion of a model of hemispherical craters at all scales 1 cm and larger, covering 50% of the surface, removes most of the offsets in the VIRTIS, MIRO surface temperature determinations.

Stunning Image of Rosetta above Mars taken by the Philae Lander Camera

NASA Image and Video Library

2007-02-05

Stunning image taken by the CIVA imaging instrument on Rosetta Philae lander just 4 minutes before closest approach at a distance of some 1000 km from Mars on Feb. 25, 2007. A portion of the spacecraft and one of its solar arrays are visible in nice detail. Beneath, the Mawrth Vallis region is visible on the planet's disk. Mawrth Vallis is particularly relevant as it is one of the areas on the Martian surface where the OMEGA instrument on board ESA's Mars Express detected the presence of hydrated clay minerals -- a sign that water may have flown abundantly on that region in the very early history of Mars. Id 217487 http://photojournal.jpl.nasa.gov/catalog/PIA18154

Using Competitions to Engage the Public: Lessons Learnt from Rosetta

NASA Astrophysics Data System (ADS)

O'Flaherty, K. S.; Baldwin, E.; Mignone, C.; Homfeld, A. M.; Scuka, D.; Schepers, A.; Braun, M.; Croci, F.; Giacomini, L.; Journo, N.; Bauer, M.; McCaughrean, M.

2016-03-01

The year 2014 was an historic and challenging time for the Rosetta mission. On 20 January the spacecraft awoke from a 957-day hibernation; by August, it had arrived at Comet 67P/Churyumov-Gerasimenko; and in November, the lander Philae was deployed to the comet's surface. These milestones were communicated by traditional outreach channels -- on websites and via press events -- as well as through the extensive use of social media. To provide an opportunity for the public to participate actively in these milestones, the European Space Agency and its partners ran three competitions. In this article we outline how these competitions provided a means for the public to engage with what was to become one of the most exciting space science missions in decades.

Building and testing of MIDAS instrument sub-assemblies

NASA Astrophysics Data System (ADS)

Lewis, S. D.

2001-09-01

The MIDAS instrument is an atomic force microscope developed by ESTEC to fly on Rosetta. The purpose of the instrument is to sample and characterise cometary dust, which impinges upon a facetted wheel contained within the instrument enclosure. Due to its relative complexity, the long cruise phase of the Rosetta mission and the relatively novel use of piezomotors for all drive requirements the instrument has a number of interesting mechanisms engineering challenges. This paper describes the lubricant selection, EM and FM subassembly build and test campaigns carried out by AEA Technology Space in close support of the instrumentlevel activities which ran in parallel at ESTEC. The paper also identifies some lessons learned, which can be generally applied in other mechanism programmes.

The Systematic Classification of Gallbladder Stones

PubMed Central

Qiao, Tie; Ma, Rui-hong; Luo, Xiao-bing; Yang, Liu-qing; Luo, Zhen-liang; Zheng, Pei-ming

2013-01-01

Background To develop a method for systematic classification of gallbladder stones, analyze the clinical characteristics of each type of stone and provide a theoretical basis for the study of the formation mechanism of different types of gallbladder stones. Methodology A total of 807 consecutive patients with gallbladder stones were enrolled and their gallstones were studied. The material composition of gallbladder stones was analyzed using Fourier Transform Infrared spectroscopy and the distribution and microstructure of material components was observed with Scanning Electron Microscopy. The composition and distribution of elements were analyzed by an X-ray energy spectrometer. Gallbladder stones were classified accordingly, and then, gender, age, medical history and BMI of patients with each type of stone were analyzed. Principal Findings Gallbladder stones were classified into 8 types and more than ten subtypes, including cholesterol stones (297), pigment stones (217), calcium carbonate stones (139), phosphate stones (12), calcium stearate stones (9), protein stones (3), cystine stones (1) and mixed stones (129). Mixed stones were those stones with two or more than two kinds of material components and the content of each component was similar. A total of 11 subtypes of mixed stones were found in this study. Patients with cholesterol stones were mainly female between the ages of 30 and 50, with higher BMI and shorter medical history than patients with pigment stones (P<0.05), however, patients with pigment, calcium carbonate, phosphate stones were mainly male between the ages of 40 and 60. Conclusion The systematic classification of gallbladder stones indicates that different types of stones have different characteristics in terms of the microstructure, elemental composition and distribution, providing an important basis for the mechanistic study of gallbladder stones. PMID:24124459

Dietary treatment of urinary risk factors for renal stone formation. A review of CLU Working Group.

PubMed

Prezioso, Domenico; Strazzullo, Pasquale; Lotti, Tullio; Bianchi, Giampaolo; Borghi, Loris; Caione, Paolo; Carini, Marco; Caudarella, Renata; Ferraro, Manuel; Gambaro, Giovanni; Gelosa, Marco; Guttilla, Andrea; Illiano, Ester; Martino, Marangella; Meschi, Tiziana; Messa, Piergiorgio; Miano, Roberto; Napodano, Giorgio; Nouvenne, Antonio; Rendina, Domenico; Rocco, Francesco; Rosa, Marco; Sanseverino, Roberto; Salerno, Annamaria; Spatafora, Sebastiano; Tasca, Andrea; Ticinesi, Andrea; Travaglini, Fabrizio; Trinchieri, Alberto; Vespasiani, Giuseppe; Zattoni, Filiberto

2015-07-07

Diet interventions may reduce the risk of urinary stone formation and its recurrence, but there is no conclusive consensus in the literature regarding the effectiveness of dietary interventions and recommendations about specific diets for patients with urinary calculi. The aim of this study was to review the studies reporting the effects of different dietary interventions for the modification of urinary risk factors in patients with urinary stone disease. A systematic search of the Pubmed database literature up to July 1, 2014 for studies on dietary treatment of urinary risk factors for urinary stone formation was conducted according to a methodology developed a priori. Studies were screened by titles and abstracts for eligibility. Data were extracted using a standardized form and the quality of evidence was assessed. Evidence from the selected studies were used to form evidence-based guideline statements. In the absence of sufficient evidence, additional statements were developed as expert opinions. General measures: Each patient with nephrolithiasis should undertake appropriate evaluation according to the knowledge of the calculus composition. Regardless of the underlying cause of the stone disease, a mainstay of conservative management is the forced increase in fluid intake to achieve a daily urine output of 2 liters. HYPERCALCIURIA: Dietary calcium restriction is not recommended for stone formers with nephrolithiasis. Diets with a calcium content ≥ 1 g/day (and low protein-low sodium) could be protective against the risk of stone formation in hypercalciuric stone forming adults. Moderate dietary salt restriction is useful in limiting urinary calcium excretion and thus may be helpful for primary and secondary prevention of nephrolithiasis. A low-normal protein intake decrease calciuria and could be useful in stone prevention and preservation of bone mass. Omega-3 fatty acids and bran of different origin decreases calciuria, but their impact on the urinary stone risk profile is uncertain. Sports beverage do not affect the urinary stone risk profile. HYPEROXALURIA: A diet low in oxalate and/or a calcium intake normal to high (800-1200 mg/day for adults) reduce the urinary excretion of oxalate, conversely a diet rich in oxalates and/or a diet low in calcium increase urinary oxalate. A restriction in protein intake may reduce the urinary excretion of oxalate although a vegetarian diet may lead to an increase in urinary oxalate. Adding bran to a diet low in oxalate cancels its effect of reducing urinary oxalate. Conversely, the addition of supplements of fruit and vegetables to a mixed diet does not involve an increased excretion of oxalate in the urine. The intake of pyridoxine reduces the excretion of oxalate. HYPERURICOSURIA: In patients with renal calcium stones the decrease of the urinary excretion of uric acid after restriction of dietary protein and purine is suggested although not clearly demonstrated. HYPOCITRATURIA: The administration of alkaline-citrates salts is recommended for the medical treatment of renal stone-formers with hypocitraturia, although compliance to this treatment is limited by gastrointestinal side effects and costs. Increased intake of fruit and vegetables (excluding those with high oxalate content) increases citrate excretion and involves a significant protection against the risk of stone formation. Citrus (lemons, oranges, grapefruit, and lime) and non citrus fruits (melon) are natural sources of dietary citrate, and several studies have shown the potential of these fruits and/or their juices in raising urine citrate levels. There are enought basis to advice an adequate fluid intake also in children. Moderate dietary salt restriction and implementation of potassium intake are useful in limiting urinary calcium excretion whereas dietary calcium restriction is not recommended for children with nephrolithiasis. It seems reasonable to advice a balanced consumption of fruit and vegetables and a low consumption of chocolate and cola according to general nutritional guidelines, although no studies have assessed in pediatric stone formers the effect of fruit and vegetables supplementation on urinary citrate and the effects of chocolate and cola restriction on urinary oxalate in pediatric stone formers. Despite the low level of scientific evidence, a low-protein (< 20 g/day) low-salt (< 2 g/day) diet with high hydration (> 3 liters/day) is strongly advised in children with cystinuria. ELDERLY: In older patients dietary counseling for renal stone prevention has to consider some particular aspects of aging. A restriction of sodium intake in association with a higher intake of potassium, magnesium and citrate is advisable in order to reduce urinary risk factors for stone formation but also to prevent the loss of bone mass and the incidence of hypertension, although more hemodynamic sensitivity to sodium intake and decreased renal function of the elderly have to be considered. A diet rich in calcium (1200 mg/day) is useful to maintain skeletal wellness and to prevent kidney stones although an higher supplementation could involve an increase of risk for both the formation of kidney stones and cardiovascular diseases. A lower content of animal protein in association to an higher intake of plant products decrease the acid load and the excretion of uric acid has no particular contraindications in the elderly patients, although overall nutritional status has to be preserved.

Clonorcis sinensis eggs are associated with calcium carbonate gallbladder stones.

PubMed

Qiao, Tie; Ma, Rui-hong; Luo, Zhen-liang; Yang, Liu-qing; Luo, Xiao-bing; Zheng, Pei-ming

2014-10-01

Calcium carbonate gallbladder stones were easily neglected because they were previously reported as a rare stone type in adults. The aim of this study was to investigate the relationship between calcium carbonate stones and Clonorchis sinensis infection. A total of 598 gallbladder stones were studied. The stone types were identified by FTIR spectroscopy. The C. sinensis eggs and DNA were detected by microscopic examination and real-time fluorescent PCR respectively. And then, some egg-positive stones were randomly selected for further SEM examination. Corresponding clinical characteristics of patients with different types of stones were also statistically analyzed. The detection rate of C. sinensis eggs in calcium carbonate stone, pigment stone, mixed stone and cholesterol stone types, as well as other stone types was 60%, 44%, 36%, 6% and 30%, respectively, which was highest in calcium carbonate stone yet lowest in cholesterol stone. A total of 182 stones were egg-positive, 67 (37%) of which were calcium carbonate stones. The C. sinensis eggs were found adherent to calcium carbonate crystals by both light microscopy and scanning electron microscopy. Patients with calcium carbonate stones were mainly male between the ages of 30 and 60, the CO2 combining power of patients with calcium carbonate stones were higher than those with cholesterol stones. Calcium carbonate gallbladder stones are not rare, the formation of which may be associated with C. sinensis infection. Copyright © 2014 Elsevier B.V. All rights reserved.

The Safety and Efficacy of Laparoscopic Common Bile Duct Exploration Combined with Cholecystectomy for the Management of Cholecysto-choledocholithiasis: An Up-to-date Meta-analysis.

PubMed

Pan, Long; Chen, Mingyu; Ji, Lin; Zheng, Longbo; Yan, Peijian; Fang, Jing; Zhang, Bin; Cai, Xiujun

2018-03-12

The aim of this study was to compare the efficacy and safety of the laparoscopic common bile duct exploration (LCBDE) and laparoscopic cholecystectomy (LC) with preoperative endoscopic sphincterotomy (pre-EST) and LC for concomitant gallstones and common bile duct (CBD) stones. It remains controversial whether LCBDE+LC is better than pre-EST+LC for gallstones and CBD stones. A specific search of online databases was performed from January 2006 to October 2017. Relative outcomes of perioperative safety and postoperative efficacy were synthesized. Single-arm meta-analysis and cumulative meta-analysis were also conducted. A total of 13 studies involving 1757 (872 vs 885) patients were included for analysis in our study. The CBD stones clearance rate [94.1% vs 90.1%; odds ratio (OR) 1.56, P = 0.012] was significantly higher in patients who underwent LCBDE+LC than pre-EST+LC, while perioperative complications (7.6% vs 12.0%; OR 0.67, P = 0.015), conversion to other procedure (4.1% vs 7.1%; OR 0.64, P = 0.025), retained stones rate (1.2% vs 7.9%; OR 0.34, P = 0.004), lithiasis recurrence rate (1.8% vs 5.6%, OR 0.32, P = 0.005), operative time [112.28 vs 132.03 minutes; weighted mean difference (WMD) -18.08, P = 0.002], length of hospital stay (4.94 vs 6.62 days; WMD -1.63, P = 0.023), and total charges [standardized mean difference (SMD) -2.76, P = 0.002] were significantly lower in LCBDE+LC. The mortality (0.6% vs 1.1%; OR 0.32, P = 0.117) was similar between the 2 groups. The cumulative meta-analyses indicated the effect sizes of CBD stones clearance rate, perioperative complications, and conversion to other procedure have already stabilized between 2 groups. The updated meta-analysis first confirms that LCBDE+LC is superior to pre-EST+LC both in perioperative safety and short- and long-term postoperative efficacy, which should be considered as optimal treatment choice for cholecysto-choledocholithiasis.

A comparison among four tract dilation methods of percutaneous nephrolithotomy: a systematic review and meta-analysis.

PubMed

Dehong, Cao; Liangren, Liu; Huawei, Liu; Qiang, Wei

2013-11-01

The purpose of this study was to evaluate the efficacy and safety of the Amplatz dilation (AD), metal telescopic dilation (MTD), balloon dilation (BD), and one-shot dilation (OSD) methods for tract dilation during percutaneous nephrolithotomy (PCNL). Relevant eligible studies were identified using three electronic databases (Medline, EMBASE, and Cochrane CENTRAL). Database acquisition and quality evaluation were independently performed by two reviewers. Efficacy (stone-free rate, surgical duration, and tract dilatation fluoroscopy time) and safety (transfusion rate and hemoglobin decrease) were evaluated using Review Manager 5.2. Four randomized controlled trials and eight clinical controlled trials involving 6,820 patients met the inclusion criteria. The pooled result from a meta-analysis showed statistically significant differences in tract dilatation fluoroscopy time and hemoglobin decrease between the OSD and MTD groups, which showed comparable stone-free and transfusion rates. Significant differences in transfusion rate were found between the BD and MTD groups. Among patients without previous open renal surgery, those who underwent BD exhibited a lower blood transfusion rate and a shorter surgical duration compared with those who underwent AD. The OSD technique is safer and more efficient than the MTD technique for tract dilation during PCNL, particularly in patients with previous open renal surgery, resulting in a shorter tract dilatation fluoroscopy time and a lesser decrease in hemoglobin. The efficacy and safety of BD are better than AD in patients without previous open renal surgery. The OSD technique should be considered for most patients who undergo PCNL therapy.

Interaction of the solar wind with comets: a Rosetta perspective

PubMed Central

2017-01-01

The Rosetta mission provides an unprecedented possibility to study the interaction of comets with the solar wind. As the spacecraft accompanies comet 67P/Churyumov–Gerasimenko from its very low-activity stage through its perihelion phase, the physics of mass loading is witnessed for various activity levels of the nucleus. While observations at other comets provided snapshots of the interaction region and its various plasma boundaries, Rosetta observations allow a detailed study of the temporal evolution of the innermost cometary magnetosphere. Owing to the short passage time of the solar wind through the interaction region, plasma instabilities such as ring--beam and non-gyrotropic instabilities are of less importance during the early life of the magnetosphere. Large-amplitude ultra-low-frequency (ULF) waves, the ‘singing’ of the comet, is probably due to a modified ion Weibel instability. This instability drives a cross-field current of implanted cometary ions unstable. The initial pick-up of these ions causes a major deflection of the solar wind protons. Proton deflection, cross-field current and the instability induce a threefold structure of the innermost interaction region with the characteristic Mach cone and Whistler wings as stationary interaction signatures as well as the ULF waves representing the dynamic aspect of the interaction. This article is part of the themed issue ‘Cometary science after Rosetta’. PMID:28554976

Early Activity of Cometary Species from ROSINA/DFMS at 67P/ Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Hässig, Myrtha; Fuselier, Stephen A.; Altwegg, Kathrin; Balsiger, Hans; Berthelier, Jean-Jacques; Bieler, André; Calmonte, Ursina; Dhooghe, Frederik; Fiethe, Björn; Gasc, Sébastien; Gombosi, Tamas I.; Jäckel, Annette; Korth, Axel; Le Roy, Léna; Rème, Henri; Rubin, Martin; Tzou, Chia-Yu; Wurz, Peter

2014-11-01

The European Space Agency’s Rosetta spacecraft arrived after a journey of more than 10 years at comet 67P/Churyumov-Gerasimenko. ROSINA is an instrument package on board Rosetta. It consists of two mass spectrometers and a COmetary Pressure Sensor (COPS). The two mass spectrometers, the Double Focusing Mass Spectrometer (DFMS) and the Reflectron Time of Flight (RTOF) complement each other with high mass resolution (e.g to resolve 13C from CH), high dynamic range (to detect low abundant isotopes and species), high mass range (to detect organics), and high time resolution. ROSINA is designed to measure the neutral gas and plasma composition in the coma of 67P/Churyumov-Gerasimenko in addition to the physical properties of the neutral component of the coma. For the first time, a comet can be observed in situ from its early activity towards and after perihelion. Little is known about what drives initial cometary activity very far from the Sun. Remote sensing observations to date are highly constrained to a limited number of a few bright comets (e.g. Hale-Bopp) and a limited number of species. Rosetta provides the first measurements of the early activity of a comet in situ and detected the first cometary molecules early August. We will focus on early activity of cometary species from the high resolution mass spectrometer ROSINA/DFMS.

Rosetta/VIRTIS investigation of the chemistry and activity of comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Bockelee-Morvan, Dominique; Drossart, Pierre; Piccioni, Giuseppe; Migliorini, Alessandra; Erard, Stéphane; Capaccioni, Fabrizio; Filacchione, Gianrico; Fougere, Nicolas; Leyrat, Cedric; Crovisier, Jacques; Capaccioni, Fabrizio

2016-07-01

The composition of cometary ices inside cometary nuclei provides clues to the chemistry of the protoplanetary disk where they formed, 4.6 Gyr ago. These ices sublimate when the body approches the Sun, so that the coma molecular species give insights on the nucleus surface and sub-surface composition. So far, most investigations of the coma chemical composition were performed from telescopic observations from the ground or space plateforms. Since August 2014, the ESA/Rosetta spacecraft has been investigating the nucleus and inner coma of 67P/Churyumov-Gerasimenko. This talk will present an overview of the results obtained by the Visual and Infrared Thermal Imaging Spectrometer (VIRTIS) instrument onboard Rosetta, focussing on observations of molecular species. VIRTIS is composed of two channels. The VIRTIS-M channel is a spectro-imager covering the 0.27-5.1 microns range, which allowed us to map the spatial distribution of H2O and CO2 (Migliorini et al. 2016, A&A in press). VIRTIS-H is a high-spectral resolution spectrometer covering the 2-5 microns range. Spectra obtained with VIRTIS-H show signatures of H2O, CO2 (both fundamental and hot bands), 13CO2, CH4 and other C-H bearing species (Bockelee-Morvan et al. A&A, 583, A6,2015). VIRTIS is a key instrument to investigate regional, diurnal and seasonal variations of the comet outgassing.

Rosetta/Alice Measurements of Atomic and Molecular Abundances in the Coma of 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Vervack, R. J., Jr.; Weaver, H. A., Jr.; Knight, M. M.; Feldman, P.; Stern, A.; Parker, J. W.; Feaga, L. M.; Steffl, A.; Bertaux, J. L.; A'Hearn, M. F.; Keeney, B. A.

2017-12-01

During the Rosetta orbital phase from August 2014 through September 2016, the Alice far-ultraviolet (FUV) imaging spectrograph routinely monitored the FUV emission from the coma of 67P/Churyumov-Gerasimenko (67P). These data, spanning 700-2050 Å, provide both spatial and temporal information on the evolution of the coma composition throughout the encounter. Emissions from hydrogen (Lyman beta at 1025 Å), oxygen (1304 Å triplet, 1356 Å), sulfur (1429 Å and 1479 Å multiplets, 1814 Å triplet), and carbon (1561 Å, 1657 Å) were regularly observed, as well as emission from the CO Fourth Positive and Cameron bands. We present a preliminary analysis of these emissions with a focus on the abundances in the coma and a mapping of the temporal and spatial variations. Both short-term (days) and long-term (months) variations will be discussed in the context of rotational and seasonal timeframes. We also present ratios among various species with the goal of identifying the dominant processes at work in the coma as a function of time. Rosetta is an ESA mission with contributions from its member states and NASA. The Alice team acknowledges continuing support from NASA's Jet Propulsion Laboratory through contract 1336850 to the Southwest Research Institute. RJV's work was supported by a subcontract from Southwest Research Institute to the Johns Hopkins University Applied Physics Laboratory.

Mechanical and electrostatic experiments with dust particles collected in the inner coma of comet 67P by COSIMA onboard Rosetta.

PubMed

Hilchenbach, Martin; Fischer, Henning; Langevin, Yves; Merouane, Sihane; Paquette, John; Rynö, Jouni; Stenzel, Oliver; Briois, Christelle; Kissel, Jochen; Koch, Andreas; Schulz, Rita; Silen, Johan; Altobelli, Nicolas; Baklouti, Donia; Bardyn, Anais; Cottin, Herve; Engrand, Cecile; Fray, Nicolas; Haerendel, Gerhard; Henkel, Hartmut; Höfner, Herwig; Hornung, Klaus; Lehto, Harry; Mellado, Eva Maria; Modica, Paola; Le Roy, Lena; Siljeström, Sandra; Steiger, Wolfgang; Thirkell, Laurent; Thomas, Roger; Torkar, Klaus; Varmuza, Kurt; Zaprudin, Boris

2017-07-13

The in situ cometary dust particle instrument COSIMA (COmetary Secondary Ion Mass Analyser) onboard ESA's Rosetta mission has collected about 31 000 dust particles in the inner coma of comet 67P/Churyumov-Gerasimenko since August 2014. The particles are identified by optical microscope imaging and analysed by time-of-flight secondary ion mass spectrometry. After dust particle collection by low speed impact on metal targets, the collected particle morphology points towards four families of cometary dust particles. COSIMA is an in situ laboratory that operates remotely controlled next to the comet nucleus. The particles can be further manipulated within the instrument by mechanical and electrostatic means after their collection by impact. The particles are stored above 0°C in the instrument and the experiments are carried out on the refractory, ice-free matter of the captured cometary dust particles. An interesting particle morphology class, the compact particles, is not fragmented on impact. One of these particles was mechanically pressed and thereby crushed into large fragments. The particles are good electrical insulators and transform into rubble pile agglomerates by the application of an energetic indium ion beam during the secondary ion mass spectrometry analysis.This article is part of the themed issue 'Cometary science after Rosetta'. © 2017 The Author(s).

Ultraviolet Observations of Coronal Mass Ejection Impact on Comet 67P/Churyumov–Gerasimenko by Rosetta Alice

NASA Astrophysics Data System (ADS)

Noonan, John W.; Stern, S. Alan; Feldman, Paul D.; Broiles, Thomas; Wedlund, Cyril Simon; Edberg, Niklas J. T.; Schindhelm, Eric; Parker, Joel Wm.; Keeney, Brian A.; Vervack, Ronald J., Jr.; Steffl, Andrew J.; Knight, Matthew M.; Weaver, Harold A.; Feaga, Lori M.; A’Hearn, Michael; Bertaux, Jean-Loup

2018-07-01

The Alice ultraviolet spectrograph on the European Space Agency Rosetta spacecraft observed comet 67P/Churyumov–Gerasimenko in its orbit around the Sun for just over two years. Alice observations taken in 2015 October, two months after perihelion, show large increases in the comet’s Lyβ, O I 1304, O I 1356, and C I 1657 Å atomic emission that initially appeared to indicate gaseous outbursts. However, the Rosetta Plasma Consortium instruments showed a coronal mass ejection (CME) impact at the comet coincident with the emission increases, suggesting that the CME impact may have been the cause of the increased emission. The presence of the semi-forbidden O I 1356 Å emission multiplet is indicative of a substantial increase in dissociative electron impact emission from the coma, suggesting a change in the electron population during the CME impact. The increase in dissociative electron impact could be a result of the interaction between the CME and the coma of 67P or an outburst coincident with the arrival of the CME. The observed dissociative electron impact emission during this period is used to characterize the O2 content of the coma at two peaks during the CME arrival. The mechanism that could cause the relationship between the CME and UV emission brightness is not well constrained, but we present several hypotheses to explain the correlation.

Rosetta Lander - Philae: preparations for landing on comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Ulamec, S.; Biele, J.; Jurado, E.; Gaudon, P.; Geurts, K.

2013-12-01

Rosetta is a Cornerstone Mission of the ESA Horizon 2000 programme. It is going to rendezvous with comet 67P/Churyumov-Gerasimenko after a ten year cruise and will study both its nucleus and coma with an orbiting spacecraft as well as with a Lander, Philae, that has been designed to land softly on the comet nucleus. Aboard Philae, a payload consisting of ten scientific instruments will perform in-situ studies of the cometary material. Philae will be separated from the mother spacecraft from a dedicated delivery trajectory. It then descends, ballistically, to the surface of the comet, stabilized with an internal flywheel. At touch-down anchoring harpoons will be fired and a damping mechanism within the landing gear will provide the lander from re-bouncing. Currently the characteristics of the nucleus of the comet are hardly known. Mapping with the orbiter cameras (shape, slopes, surface roughness) and essential measurements like gravity field, state of rotation or outgassing parameters can only be performed after arrival of the main spacecraft, between May and October 2014. These data will be used for selecting a landing site and defining the detailed landing strategy. Landing is foreseen for November 2014 at a heliocentric distance of 3 AU. The paper describes the Rosetta Lander system and its payload, but emphasizes on the preparations for landing, the landing site selection process and the planned operational timeline.

Inventory of the volatiles on comet 67P/Churyumov-Gerasimenko from Rosetta/ROSINA

NASA Astrophysics Data System (ADS)

Le Roy, Léna; Altwegg, Kathrin; Balsiger, Hans; Berthelier, Jean-Jacques; Bieler, Andre; Briois, Christelle; Calmonte, Ursina; Combi, Michael R.; De Keyser, Johan; Dhooghe, Frederik; Fiethe, Björn; Fuselier, Stephen A.; Gasc, Sébastien; Gombosi, Tamas I.; Hässig, Myrtha; Jäckel, Annette; Rubin, Martin; Tzou, Chia-Yu

2015-11-01

Context. The ESA Rosetta spacecraft (S/C) is tracking comet 67P/Churyumov-Gerasimenko in close vicinity. This prolonged encounter enables studying the evolution of the volatile coma composition. Aims: Our work aims at comparing the diversity of the coma of 67P/Churyumov-Gerasimenko at large heliocentric distance to study the evolution of the comet during its passage around the Sun and at trying to classify it relative to other comets. Methods: We used the Double Focussing Mass Spectrometer (DFMS) of the ROSINA experiment on ESA's Rosetta mission to determine relative abundances of major and minor volatile species. This study is restricted to species that have previously been detected elsewhere. Results: We detect almost all species currently known to be present in cometary coma with ROSINA DFMS. As DFMS measured the composition locally, we cannot derive a global abundance, but we compare measurements from the summer and the winter hemisphere with known abundances from other comets. Differences between relative abundances between summer and winter hemispheres are large, which points to a possible evolution of the cometary surface. This comet appears to be very rich in CO2 and ethane. Heavy oxygenated compounds such as ethylene glycol are underabundant at 3 AU, probably due to their high sublimation temperatures, but nevertheless, their presence proves that Kuiper belt comets also contain complex organic molecules.

Study of Plasma Waves Observed onboard Rosetta in the 67P/ChuryumovGerasimenko Comet Environment Using High Time Resolution Density Data Inferred from RPC-MIP and RPC-LAP Cross-calibration

NASA Astrophysics Data System (ADS)

Breuillard, H.; Henri, P.; Vallières, X.; Eriksson, A. I.; Odelstad, E.; Johansson, F. L.; Richter, I.; Goetz, C.; Wattieaux, G.; Tsurutani, B.; Hajra, R.; Le Contel, O.

2017-12-01

During two years, the groundbreaking ESA/Rosetta mission was able to escort comet 67P where previous cometary missions were only limited to flybys. This enabled for the first time to make in-situ measurements of the evolution of a comet's plasma environment. The density and temperature measured by Rosetta are derived from RPC-Mutual Impedance Probe (MIP) and RPC-Langmuir Probe (LAP). On one hand, low time resolution electron density are calculated using the plasma frequency extracted from the MIP mutual impedance spectra. On the other hand, high time resolution density fluctuations are estimated from the spacecraft potential measured by LAP. In this study, using a simple spacecraft charging model, we perform a cross-calibration of MIP plasma density and LAP spacecraft potential variations to obtain high time resolution measurements of the electron density. These results are also used to constrain the electron temperature. Then we make use of these new dataset, together with RPC-MAG magnetic field measurements, to investigate for the first time the compressibility and the correlations between plasma and magnetic field variations, for both singing comet waves and steepened waves observed, respectively during low and high cometary outgassing activity, in the plasma environment of comet 67P.

Integrating linear optimization with structural modeling to increase HIV neutralization breadth.

PubMed

Sevy, Alexander M; Panda, Swetasudha; Crowe, James E; Meiler, Jens; Vorobeychik, Yevgeniy

2018-02-01

Computational protein design has been successful in modeling fixed backbone proteins in a single conformation. However, when modeling large ensembles of flexible proteins, current methods in protein design have been insufficient. Large barriers in the energy landscape are difficult to traverse while redesigning a protein sequence, and as a result current design methods only sample a fraction of available sequence space. We propose a new computational approach that combines traditional structure-based modeling using the Rosetta software suite with machine learning and integer linear programming to overcome limitations in the Rosetta sampling methods. We demonstrate the effectiveness of this method, which we call BROAD, by benchmarking the performance on increasing predicted breadth of anti-HIV antibodies. We use this novel method to increase predicted breadth of naturally-occurring antibody VRC23 against a panel of 180 divergent HIV viral strains and achieve 100% predicted binding against the panel. In addition, we compare the performance of this method to state-of-the-art multistate design in Rosetta and show that we can outperform the existing method significantly. We further demonstrate that sequences recovered by this method recover known binding motifs of broadly neutralizing anti-HIV antibodies. Finally, our approach is general and can be extended easily to other protein systems. Although our modeled antibodies were not tested in vitro, we predict that these variants would have greatly increased breadth compared to the wild-type antibody.

Ion composition variety and variability around perihelion

NASA Astrophysics Data System (ADS)

Beth, Arnaud; Altwegg, Kathrin; Behar, Étienne; Broiles, Tom; Burch, Jim; Carr, Christopher; Eriksson, Anders; Galand, Marina; Goetz, Charlotte; Henri, Pierre; Heritier, Kévin; Nilsson, Hans; Odelstad, Elias; Richter, Ingo; Rubin, Martin; Vallieres, Xavier

2017-04-01

For two years, the Double Focusing Mass Spectrometer (DFMS), one of the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) onboard Rosetta probed the neutral gas and the plasma composition of the comet 67P/Churyumov-Gerasimenko's coma (67P). Major ion species detected include water ions (e.g, H2O+, H3O+, HO+) observed throughout the escorting phase. The analysis of DFMS data revealed a large zoo of ion species near perihelion (summer 2015). In particular, protonated versions of high proton affinity neutrals (e.g., NH4+) were detected, but also hydrocarbon and organic ion species. Near perihelion, ion composition was also highly variable and showed interesting variations in the complexity of the observed ion species. We will first present an overview of the rich variety of ion species observed during perihelion. This study will be supported by ionospheric modeling of ion composition below the ion exobase. We will then show an intercomparison between DFMS data and Rosetta Plasma Consortium (RPC) plasma and particle data to interpret the DFMS ion composition variability. Our primary goal is to highlight any correlation between observations from these different instruments (i.e. ion composition, ion and electron number density, energy distribution, magnetic field) and to find relevant signatures of physical processes which can affect the chemistry and dynamics (e.g., acceleration and deflection) of the involved neutral and ion species.

Ground truth of (sub-)micrometre cometary dust - Results of MIDAS onboard Rosetta

NASA Astrophysics Data System (ADS)

Mannel, Thurid; Bentley, Mark; Schmied, Roland; Torkar, Klaus; Jeszenszky, Harald; Romsted, Jens; Levasseur-Regourd, A.; Weber, Iris; Jessberger, Elmar K.; Ehrenfreund, Pascale; Köberl, Christian; Havnes, Ove

2016-10-01

The investigation of comet 67P by Rosetta has allowed the comprehensive characterisation of pristine cometary dust particles ejected from the nucleus. Flying alongside the comet at distances as small as a few kilometres, and with a relative velocity of only centimetres per second, the Rosetta payload sampled almost unaltered dust. A key instrument to study this dust was MIDAS (the Micro-Imaging Dust Analysis System), a dedicated atomic force microscope that scanned the surfaces of hundreds of (sub-)micrometre sized particles in 3D with resolutions down to nanometres. This offers the unique opportunity to explore the morphology of smallest cometary dust and expand our current knowledge about cometary material.Here we give an overview of dust collected and analysed by MIDAS and highlight its most important features. These include the ubiquitous agglomerate nature of the dust, which is found at all size scales from the largest (>10 µm) through to the smallest (<1 µm) dust particles. The sub-units show characteristic sizes and shapes that are compared with model predictions for interstellar dust.Our findings constrain key parameters of the evolution of the early Solar System. We will discuss which dust growth model is favoured by the observed morphology and how the results restrict cometary formation. Finally, dust particles detected by MIDAS resemble primitive interplanetary dust which is a strong argument for a common cometary origin.

Measuring stone volume - three-dimensional software reconstruction or an ellipsoid algebra formula?

PubMed

Finch, William; Johnston, Richard; Shaida, Nadeem; Winterbottom, Andrew; Wiseman, Oliver

2014-04-01

To determine the optimal method for assessing stone volume, and thus stone burden, by comparing the accuracy of scalene, oblate, and prolate ellipsoid volume equations with three-dimensional (3D)-reconstructed stone volume. Kidney stone volume may be helpful in predicting treatment outcome for renal stones. While the precise measurement of stone volume by 3D reconstruction can be accomplished using modern computer tomography (CT) scanning software, this technique is not available in all hospitals or with routine acute colic scanning protocols. Therefore, maximum diameters as measured by either X-ray or CT are used in the calculation of stone volume based on a scalene ellipsoid formula, as recommended by the European Association of Urology. In all, 100 stones with both X-ray and CT (1-2-mm slices) were reviewed. Complete and partial staghorn stones were excluded. Stone volume was calculated using software designed to measure tissue density of a certain range within a specified region of interest. Correlation coefficients among all measured outcomes were compared. Stone volumes were analysed to determine the average 'shape' of the stones. The maximum stone diameter on X-ray was 3-25 mm and on CT was 3-36 mm, with a reasonable correlation (r = 0.77). Smaller stones (<9 mm) trended towards prolate ellipsoids ('rugby-ball' shaped), stones of 9-15 mm towards oblate ellipsoids (disc shaped), and stones >15 mm towards scalene ellipsoids. There was no difference in stone shape by location within the kidney. As the average shape of renal stones changes with diameter, no single equation for estimating stone volume can be recommended. As the maximum diameter increases, calculated stone volume becomes less accurate, suggesting that larger stones have more asymmetric shapes. We recommend that research looking at stone clearance rates should use 3D-reconstructed stone volumes when available, followed by prolate, oblate, or scalene ellipsoid formulas depending on the maximum stone diameter. © 2013 The Authors. BJU International © 2013 BJU International.

Treatment of the Infected Stone.

PubMed

Marien, Tracy; Miller, Nicole L

2015-11-01

Infected kidney stones refer to stones that form because of urinary tract infections with urease-producing bacteria, secondarily infected stones of any composition, or stones obstructing the urinary tract leading to pyelonephritis. The mainstay of treatment of infection stones is complete stone removal. Kidney stones that obstruct the urinary tract and cause obstructive pyelonephritis are also frequently referred to as infected stones. Obstructive pyelonephritis is a urologic emergency as it can result in sepsis and even death. Infection stones and obstructive stones causing pyelonephritis are different disease processes, and their workup and management are described separately. Copyright © 2015 Elsevier Inc. All rights reserved.

New Probe of Early Phases of Jet Formation and Evolution using Stellar Tidal Disruption Flares

NASA Astrophysics Data System (ADS)

Ranga Reddy Pasham, Dheeraj; van Velzen, Sjoert

2018-01-01

The tidal disruption of a star by a supermassive black hole can result in transient radio emission. The electrons producing these synchrotron radio flares could either be accelerated inside a relativistic jet or externally by shocks resulting from an outflow interacting with the circumnuclear medium. Until now, evidence for the internal emission mechanism has been lacking; nearly all tidal disruption flare studies have adopted the external shock model to explain the observed properties of radio flares. I will talk about a result that presents a challenge to external emission models: we discovered a cross-correlation between the soft X-ray (0.3-1 keV) and 16 GHz radio flux of Rosetta Stone tidal disruption flare ASASSN-14li. Variability features in the X-ray light curve appear again in the radio light curve, but after a time lag of about 13 days. This demonstrates that soft X-ray emitting accretion disk regulates the radio emission. This coupling appears to be inconsistent with all previous external emission models for this source but is naturally explained if the radio emission originates from a freely expanding jet. I will show that emission internal to an adiabatically expanding jet can also reproduce the observed evolution of the radio spectral energy distribution. Furthermore, both the correlation between X-ray and radio luminosity as well as our radio spectral modeling imply an approximately linear coupling between the accretion rate and jet power. I will also discuss how future tidal disruption events can help us understand how jets form and evolve in general.

OJ287: Deciphering the "Rosetta stone of blazars★"

NASA Astrophysics Data System (ADS)

Britzen, S.; Fendt, C.; Witzel, G.; Qian, S.-J.; Pashchenko, I. N.; Kurtanidze, O.; Zajacek, M.; Martinez, G.; Karas, V.; Aller, M.; Aller, H.; Eckart, A.; Nilsson, K.; Arévalo, P.; Cuadra, J.; Subroweit, M.; Witzel, A.

2018-04-01

OJ287 is the best candidate Active Galactic Nucleus (AGN) for hosting a supermassive binary black hole (SMBBH) at very close separation. We present 120 Very Long Baseline Array (VLBA) observations (at 15 GHz) covering the time between Apr. 1995 and Apr. 2017. We find that the OJ287 radio jet is precessing on a timescale of ˜ 22 yr. In addition, our data are consistent with a jet-axis rotation on a yearly timescale. We model the precession (24±2 yr) and combined motion of jet precession and jet-axis rotation. The jet motion explains the variability of the total radio flux-density via viewing angle changes and Doppler beaming. Half of the jet-precession timescale is of the order of the dominant optical periodicity timescale. We suggest that the optical emission is synchrotron emission and related to the jet radiation. The jet dynamics and flux-density light curves can be understood in terms of geometrical effects. Disturbances of an accretion disc caused by a plunging black hole do not seem necessary to explain the observed variability. Although the SMBBH model does not seem necessary to explain the observed variability, a SMBBH or Lense-Thirring precession (disc aSround single black hole) seem to be required to explain the timescale of the precessing motion. Besides jet rotation also nutation of the jet axis could explain the observed motion of the jet axis. We find a strikingly similar scaling for the timescales for precession and nutation as indicated for SS433 with a factor of roughly 50 times longer in OJ287.

Burke-Fahn-Marsden dystonia severity, Gross Motor, Manual Ability, and Communication Function Classification scales in childhood hyperkinetic movement disorders including cerebral palsy: a 'Rosetta Stone' study.

PubMed

Elze, Markus C; Gimeno, Hortensia; Tustin, Kylee; Baker, Lesley; Lumsden, Daniel E; Hutton, Jane L; Lin, Jean-Pierre S-M

2016-02-01

Hyperkinetic movement disorders (HMDs) can be assessed using impairment-based scales or functional classifications. The Burke-Fahn-Marsden Dystonia Rating Scale-movement (BFM-M) evaluates dystonia impairment, but may not reflect functional ability. The Gross Motor Function Classification System (GMFCS), Manual Ability Classification System (MACS), and Communication Function Classification System (CFCS) are widely used in the literature on cerebral palsy to classify functional ability, but not in childhood movement disorders. We explore the concordance of these three functional scales in a large sample of paediatric HMDs and the impact of dystonia severity on these scales. Children with HMDs (n=161; median age 10y 3mo, range 2y 6mo-21y) were assessed using the BFM-M, GMFCS, MACS, and CFCS from 2007 to 2013. This cross-sectional study contrasts the information provided by these scales. All four scales were strongly associated (all Spearman's rank correlation coefficient rs >0.72, p<0.001), with worse dystonia severity implying worse function. Secondary dystonias had worse dystonia and less function than primary dystonias (p<0.001). A longer proportion of life lived with dystonia is associated with more severe dystonia (rs =0.42, p<0.001). The BFM-M is strongly linked with the GMFCS, MACS, and CFCS, irrespective of aetiology. Each scale offers interrelated but complementary information and is applicable to all aetiologies. Movement disorders including cerebral palsy can be effectively evaluated using these scales. © 2015 Mac Keith Press.

Imaging-based assessment of the mineral composition of urinary stones: an in vitro study of the combination of hounsfield unit measurement in noncontrast helical computerized tomography and the twinkling artifact in color Doppler ultrasound.

PubMed

Hassani, Hakim; Raynal, Gauthier; Spie, Romain; Daudon, Michel; Vallée, Jean-Noël

2012-05-01

We evaluated the value of combining noncontrast helical computerized tomography (NCHCT) and color Doppler ultrasound in the assessment of the composition of urinary stones. In vitro, we studied 120 stones of known composition, that separate into the five main types: 18 calcium oxalate monohydrate (COM) stones, 41 calcium oxalate dihydrate (COD) stones, 24 uric acid stones, 25 calcium phosphate stones and 12 cystine calculi. Stones were characterized in terms of their Hounsfield density (HU) in NCHCT and the presence of a twinkling artifact (TA) in color Doppler ultrasound. There were statistically significant HU differences between calcium and non-calcium stones (p < 0.001), calcium oxalate stones and calcium phosphate stones (p < 0.001) and uric acid stones and cystine calculi (p < 0.001) but not between COM and COD stones (p = 0.786). Hence, the HU was a predictive factor of the composition of all types of stones, other than for COM and COD stones within the calcium oxalate class (p > 0.05). We found that the TA does not enable differentiation between calcium and non-calcium stones (p > 0.999), calcium oxalate stones and calcium phosphate stones (p = 0.15), or uric acid stones and cystine calculi (p = 0.079). However, it did reveal a significant difference between COM and COD stones (p = 0.002). The absence of a TA is a predictive factor for the presence of COM stones (p = 0.008). Hence, the association of NCHCT and Doppler enables the accurate classification of the five types of stones in vitro. Copyright © 2012 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.

Stone size limits the use of Hounsfield units for prediction of calcium oxalate stone composition.

PubMed

Stewart, Gregory; Johnson, Lewis; Ganesh, Halemane; Davenport, Daniel; Smelser, Woodson; Crispen, Paul; Venkatesh, Ramakrishna

2015-02-01

To evaluate the role of stone size in predicting urinary calculus composition using Hounsfield units on noncontrasted computed tomography (CT) scan. A retrospective review was performed for all patients who underwent ureteroscopy or percutaneous nephrolithotomy during a 1-year period, had a stone analysis performed, and had CT imaging available for review. All CT scans were reviewed by a board-certified radiologist. Variables evaluated included age, sex, body mass index, stone size, stone location, Hounsfield units (HUs), and stone composition. We identified a total of 91 patients (41 men and 50 women) with CT imaging and stone analysis available for review. Stone analysis showed 41 calcium oxalate monohydrate (CaOxMH), 13 calcium oxalate dihydrate, 29 calcium phosphate, 5 uric acid, 2 struvite, and 1 cystine stone. Average age was 46 years, and average body mass index was 32 kg/m2. Measured HUs varied significantly with size for CaOxMH and calcium oxalate dihydrate stones (P values <.05), but not for calcium phosphate stones (P = .126). Using a CaOxMH identification value of 700-1000 HUs, 28 of 41 stone compositions (68%) would not have been correctly identified, including all 10 (100%) small (<5 mm) stones, 13 of 22 (59%) medium (5-10 mm) stones, and 5 of 9 large (>10 mm) stones (55%). For calcium stones, the ability of CT HUs to predict stone composition was limited, likely due to the mixed stone composition. Within a cohort of CaOxMH stone formers, measured HUs varied linearly with stone size. All stones <5 mm were below thresholds for CaOxMH composition. Copyright © 2015 Elsevier Inc. All rights reserved.

Biochemical and dietary factors of uric acid stone formation.

PubMed

Trinchieri, Alberto; Montanari, Emanuele

2018-04-01

The aim of this study was to compare the clinical characteristics of "pure" uric acid renal stone formers (UA-RSFs) with that of mixed uric acid/calcium oxalate stone formers (UC-RSFs) and to identify which urinary and dietary risk factors predispose to their formation. A total of 136 UA-RSFs and 115 UC-RSFs were extracted from our database of renal stone formers. A control group of 60 subjects without history of renal stones was considered for comparison. Data from serum chemistries, 24-h urine collections and 24-h dietary recalls were considered. UA-RSFs had a significantly (p = 0.001) higher body mass index (26.3 ± 3.6 kg/m 2 ) than UC-RSFs, whereas body mass index of UA-RSFs was higher but not significantly than in controls (24.6 ± 4.7) (p = 0.108). The mean urinary pH was significantly lower in UA-RSFs (5.57 ± 0.58) and UC-RSFs (5.71 ± 0.56) compared with controls (5.83 ± 0.29) (p = 0.007). No difference of daily urinary uric acid excretion was observed in the three groups (p = 0.902). Daily urinary calcium excretion was significantly (p = 0.018) higher in UC-RSFs (224 ± 149 mg/day) than UA-RSFs (179 ± 115) whereas no significant difference was observed with controls (181 ± 89). UA-RSFs tend to have a lower uric acid fractional excretion (0.083 ± 0.045% vs 0.107+/-0.165; p = 0.120) and had significantly higher serum uric acid (5.33 ± 1.66 vs 4.78 ± 1.44 mg/dl; p = 0.007) than UC-RSFs. The mean energy, carbohydrate and vitamin C intakes were higher in UA-SFs (1987 ± 683 kcal, 272 ± 91 g, 112 ± 72 mg) and UC-SFs (1836 ± 74 kcal, 265 ± 117, 140 ± 118) with respect to controls (1474 ± 601, 188 ± 84, 76 ± 53) (p = 0.000). UA-RSFs should be differentiated from UC-RSFs as they present lower urinary pH, lower uric acid fractional excretion and higher serum uric acid. On the contrary, patients with UC-RSFs show urinary risk factors more similar to those for calcium oxalate stones. The dietary approach in patients forming uric acid stones should be reconsidered with more attention to the quantity and quality of carbohydrate intake.

Time variability and heterogeneity in the coma of 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Hässig, M.; Altwegg, K.; Balsiger, H.; Bar-Nun, A.; Berthelier, J. J.; Bieler, A.; Bochsler, P.; Briois, C.; Calmonte, U.; Combi, M.; De Keyser, J.; Eberhardt, P.; Fiethe, B.; Fuselier, S. A.; Galand, M.; Gasc, S.; Gombosi, T. I.; Hansen, K. C.; Jäckel, A.; Keller, H. U.; Kopp, E.; Korth, A.; Kührt, E.; Le Roy, L.; Mall, U.; Marty, B.; Mousis, O.; Neefs, E.; Owen, T.; Rème, H.; Rubin, M.; Sémon, T.; Tornow, C.; Tzou, C.-Y.; Waite, J. H.; Wurz, P.

2015-01-01

Comets contain the best-preserved material from the beginning of our planetary system. Their nuclei and comae composition reveal clues about physical and chemical conditions during the early solar system when comets formed. ROSINA (Rosetta Orbiter Spectrometer for Ion and Neutral Analysis) onboard the Rosetta spacecraft has measured the coma composition of comet 67P/Churyumov-Gerasimenko with well-sampled time resolution per rotation. Measurements were made over many comet rotation periods and a wide range of latitudes. These measurements show large fluctuations in composition in a heterogeneous coma that has diurnal and possibly seasonal variations in the major outgassing species: water, carbon monoxide, and carbon dioxide. These results indicate a complex coma-nucleus relationship where seasonal variations may be driven by temperature differences just below the comet surface.

Protein Scaffolding for Small Molecule Catalysts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baker, David

We aim to design hybrid catalysts for energy production and storage that combine the high specificity, affinity, and tunability of proteins with the potent chemical reactivities of small organometallic molecules. The widely used Rosetta and RosettaDesign methodologies will be extended to model novel protein / small molecule catalysts in which one or many small molecule active centers are supported and coordinated by protein scaffolding. The promise of such hybrid molecular systems will be demonstrated with the nickel-phosphine hydrogenase of DuBois et. al.We will enhance the hydrogenase activity of the catalyst by designing protein scaffolds that incorporate proton relays and systematicallymore » modulate the local environment of the catalyticcenter. In collaboration with DuBois and Shaw, the designs will be experimentally synthesized and characterized.« less

Collecting cometary soil samples? Development of the ROSETTA sample acquisition system

NASA Technical Reports Server (NTRS)

Coste, P. A.; Fenzi, M.; Eiden, Michael

1993-01-01

In the reference scenario of the ROSETTA CNRS mission, the Sample Acquisition System is mounted on the Comet Lander. Its tasks are to acquire three kinds of cometary samples and to transfer them to the Earth Return Capsule. Operations are to be performed in vacuum and microgravity, on a probably rough and dusty surface, in a largely unknown material, at temperatures in the order of 100 K. The concept and operation of the Sample Acquisition System are presented. The design of the prototype corer and surface sampling tool, and of the equipment for testing them at cryogenic temperatures in ambient conditions and in vacuum in various materials representing cometary soil, are described. Results of recent preliminary tests performed in low temperature thermal vacuum in a cometary analog ice-dust mixture are provided.

Dust Impact Monitor (SESAME-DIM) on-board Rosetta/Philae: Aerogel as comet analog material

NASA Astrophysics Data System (ADS)

Flandes, Alberto; Albin, Thomas; Arnold, Walter; Fischer, Hans-Herbert; Hirn, Attila; Loose, Alexander; Mewes, Cornelia; Podolak, Morris; Seidensticker, Klaus J.; Volkert, Cynthia; Krüger, Harald

2018-03-01

On 12 November 2014, during the descent of the Rosetta lander Philae to the surface of comet 67P/Churyumov-Gerasimenko the Dust Impact Monitor (DIM) on board Philae recorded an impact of a cometary dust impact of a cometary dust particle at 2.4 km from the comet surface (5 km from the nucleus' barycentre). In this work, we report further experiments that support the identification of this particle. We use aerogel as a comet analog material to characterise the properties of this particle. Our experiments show that this particle has a radius of 0.9 mm, a low density of 0.25 g/cm3 and a high porosity close to 90%. The particle likely moved at near 4 m/s with respect to the comet.

Protein Structure Determination using Metagenome sequence data

PubMed Central

Ovchinnikov, Sergey; Park, Hahnbeom; Varghese, Neha; Huang, Po-Ssu; Pavlopoulos, Georgios A.; Kim, David E.; Kamisetty, Hetunandan; Kyrpides, Nikos C.; Baker, David

2017-01-01

Despite decades of work by structural biologists, there are still ~5200 protein families with unknown structure outside the range of comparative modeling. We show that Rosetta structure prediction guided by residue-residue contacts inferred from evolutionary information can accurately model proteins that belong to large families, and that metagenome sequence data more than triples the number of protein families with sufficient sequences for accurate modeling. We then integrate metagenome data, contact based structure matching and Rosetta structure calculations to generate models for 614 protein families with currently unknown structures; 206 are membrane proteins and 137 have folds not represented in the PDB. This approach provides the representative models for large protein families originally envisioned as the goal of the protein structure initiative at a fraction of the cost. PMID:28104891

Bladder stones after bladder augmentation are not what they seem.

PubMed

Szymanski, Konrad M; Misseri, Rosalia; Whittam, Benjamin; Lingeman, James E; Amstutz, Sable; Ring, Joshua D; Kaefer, Martin; Rink, Richard C; Cain, Mark P

2016-04-01

Bladder and renal calculi after bladder augmentation are thought to be primarily infectious, yet few studies have reported stone composition. The primary aim was to assess bladder stone composition after augmentation, and renal stone composition in those with subsequent nephrolithiasis. The exploratory secondary aim was to screen for possible risk factors for developing infectious stones. Patients treated for bladder stones after bladder augmentation at the present institution between 1981 and 2012 were retrospectively reviewed. Data were collected on demographics, surgeries and stone composition. Patients without stone analysis were excluded. Stones containing struvite, carbonate apatite or ammonium acid ureate were classified as infectious. The following variables were analyzed for a possible association with infectious bladder stone composition: gender, history of cloacal exstrophy, ambulatory status, nephrolithiasis, recurrent urea-splitting urinary tract infections, first vs recurrent stones, timing of presentation with a calculus, history of bladder neck procedures, catheterizable channel and vesicoureteral reflux. Fisher's exact test was used for analysis. Of the 107 patients with bladder stones after bladder augmentation, 85 met inclusion criteria. Median age at augmentation was 8.0 years (follow-up 10.8 years). Forty-four patients (51.8%) recurred (14 multiple recurrences, 143 bladder stones). Renal calculi developed in 19 (22.4%) patients with a bladder stone, and 10 (52.6%) recurred (30 renal stones). Overall, 30.8% of bladder stones were non-infectious (Table). Among patients recurring after an infectious bladder stone, 30.4% recurred with a non-infectious one. Among patients recurring after a non-infectious stone, 84.6% recurred with a non-infectious one (P = 0.005). Compared with bladder stones, renal stones were more likely to be non-infectious (60.0%, P = 0.003). Of patients with recurrent renal calculi after an infectious stone, 40.0% recurred with a non-infectious one. No clinical variables were significantly associated with infectious stone composition on univariate (≥0.28) or bivariate analysis (≥0.36). This study had several limitations: it was not possible to accurately assess adherence with bladder irrigations, and routine metabolic evaluations were not performed. The findings may not apply to patients in all clinical settings. While stone analysis was available for 3/4 of the stones, similar rates of incomplete stone analyses have been reported in other series. In patients with bladder augmentation, 1/3 of bladder stones and >1/2 of renal stones were non-infectious. Furthermore, an infectious stone does not imply an infectious recurrent stone and no known clinical variables appear to be associated with stone composition, suggesting that there is a possible metabolic component in stone formation after bladder augmentation. Copyright © 2015 Journal of Pediatric Urology Company. Published by Elsevier Ltd. All rights reserved.

Stone heterogeneity index on single-energy noncontrast computed tomography can be a positive predictor of urinary stone composition

PubMed Central

Lee, Jong Soo; Cho, Kang Su; Lee, Seung Hwan; Yoon, Young Eun; Kang, Dong Hyuk; Jeong, Won Sik; Jung, Hae Do; Kwon, Jong Kyou

2018-01-01

The aim of this study was to investigate the correlation between stone composition and single-energy noncontrast computed tomography (NCCT) parameters, including stone heterogeneity index (SHI) and mean stone density (MSD), in patients with urinary calculi. We retrospectively reviewed medical records of 255 patients who underwent operations or procedures for urinary stones or had spontaneous stone passage between December 2014 and October 2015. Among these, 214 patients with urinary calculi who underwent NCCT and stone composition analyses were included in the study. Maximal stone length (MSL), mean stone density (MSD), and stone heterogeneity index (SHI) were determined on pretreatment NCCT. The mean MSD (454.68±177.80 HU) and SHI (115.82±96.31 HU) of uric acid stones were lower than those of all other types. Based on post hoc tests, MSD was lower for uric acid stones than for the other types (vs. CaOx: P<0.001; vs. infection stones: P<0.001). SHI was lower for uric acid stones than for the other types (vs. CaOx: P<0.001; vs. infection stones: P<0.001) Receiver operating characteristic curves of uric acid stones for MSD and SHI demonstrated that SHI (cut-off value: 140.4 HU) was superior to MSD (cut-off value: 572.3 HU) in predicting uric acid stones (P<0.001). PMID:29649219

MECHANISMS OF HUMAN KIDNEY STONE FORMATION

PubMed Central

Evan, Andrew P.; Worcester, Elaine M.; Coe, Fredric L.; Williams, James; Lingeman, James E.

2014-01-01

The precise mechanisms of kidney stone formation and growth are not completely known, even though human stone disease appears to be one of the oldest diseases known to medicine. With the advent of the new digital endoscope and detailed renal physiological studies performed on well phenotyped stone formers, substantial advances have been made in our knowledge of the pathogenesis of the most common type of stone former, the idiopathic calcium oxalate stone former (ICSF) as well as nine other stone forming groups. The observations from our group on human stone formers and those of others on model systems have suggested four entirely different pathways for kidney stone formation. Calcium oxalate stone growth over sites of Randall’s plaque appear to be the primary mode of stone formation for those patients with hypercalciuria. Overgrowths off the ends of Bellini duct plugs have been noted in most stone phenotypes, do they result in a clinical stone? Micro-lith formation does occur within the lumens of dilated inner medullary collecting ducts of cystinuric stone formers and appear to be confined to this space. Lastly, cystinuric stone formers also have numerous small, oval, smooth yellow appearing calyceal stones suggestive of formation in free solution. The scientific basis for each of these four modes of stone formation are reviewed and used to explore novel research opportunities. PMID:25108546

Nephrectomy for benign disease in the UK: results from the British Association of Urological Surgeons nephrectomy database.

PubMed

Zelhof, Bachar; McIntyre, Iain G; Fowler, Sarah M; Napier-Hemy, Richard D; Burke, Daniel M; Grey, Ben R

2016-01-01

To summarize the practice of UK urologists with regard to nephrectomy for benign disease, documenting the indications, procedural techniques and outcomes. All patients undergoing nephrectomy for a benign condition in 2012 were identified from the British Association of Urological Surgeons (BAUS) nephrectomy database. Recorded variables included the technique of surgery, the type of minimally invasive procedure, operating time, blood loss, transfusion rate, conversion rate, intra- and postoperative complications and mortality rate. Cases were also sub-analysed according to their pathologies to determine the differences in complication rate between stone disease, pyelonephritis, non-functioning kidney and other benign lesions. To contextualize procedural complexity, the simple nephrectomy data were compared with those obtained from the BAUS stage T1 radical nephrectomy audit. A total of 1 093 nephrectomies were performed (537 non-functioning kidneys, 142 stone disease, 129 nephrectomies secondary to pyelonephritis and 285 cases with other benign conditions). Of these, 76% were performed laparoscopically. Blood loss >500 mL was noted in 74 cases with a 4.8% blood transfusion rate. The intra- and postoperative complication rates were 5.2 and 11.9%, respectively. Of the 847 minimally invasive procedures, the conversion rate was 5.9%. Patients with stone disease have the highest intra- and postoperative complications (9.9 and 23.9%, respectively) compared with other benign pathologies. The total number of T1 radical nephrectomies performed was 1 095. In comparison with T1 radical nephrectomy, simple nephrectomy carries an increased risk of conversion to an open procedure (1.8 times), a higher rate of blood transfusion (4.8 vs 2.8%), and a higher risk of intra- and postoperative complications (5.2 vs 3.7% and 11.9 vs 10%, respectively). The present study reports the largest series of nephrectomies performed for benign disease and the resultant data now support the bespoke preoperative counselling of patients. Furthermore, it confirms the commonly held view that simple nephrectomy can be more difficult than its radical counterpart. The authors suggest that the term 'simple nephrectomy' is changed to 'benign nephrectomy'. © 2015 The Authors BJU International © 2015 BJU International Published by John Wiley & Sons Ltd.

FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling.

PubMed

Bhattacharya, Debswapna; Adhikari, Badri; Li, Jilong; Cheng, Jianlin

2016-07-01

Speed, accuracy and robustness of building protein fragment library have important implications in de novo protein structure prediction since fragment-based methods are one of the most successful approaches in template-free modeling (FM). Majority of the existing fragment detection methods rely on database-driven search strategies to identify candidate fragments, which are inherently time-consuming and often hinder the possibility to locate longer fragments due to the limited sizes of databases. Also, it is difficult to alleviate the effect of noisy sequence-based predicted features such as secondary structures on the quality of fragment. Here, we present FRAGSION, a database-free method to efficiently generate protein fragment library by sampling from an Input-Output Hidden Markov Model. FRAGSION offers some unique features compared to existing approaches in that it (i) is lightning-fast, consuming only few seconds of CPU time to generate fragment library for a protein of typical length (300 residues); (ii) can generate dynamic-size fragments of any length (even for the whole protein sequence) and (iii) offers ways to handle noise in predicted secondary structure during fragment sampling. On a FM dataset from the most recent Critical Assessment of Structure Prediction, we demonstrate that FGRAGSION provides advantages over the state-of-the-art fragment picking protocol of ROSETTA suite by speeding up computation by several orders of magnitude while achieving comparable performance in fragment quality. Source code and executable versions of FRAGSION for Linux and MacOS is freely available to non-commercial users at http://sysbio.rnet.missouri.edu/FRAGSION/ It is bundled with a manual and example data. chengji@missouri.edu Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

The Effect of Stone Composition on the Efficacy of Retrograde Intrarenal Surgery: Kidney Stones 1 - 3 cm in Diameter.

PubMed

Xue, Yuquan; Zhang, Peng; Yang, Xiaojie; Chong, Tie

2015-05-01

The goal of this study was to analyze the effect of stone composition on the efficacy of retrograde intrarenal surgery (RIRS) with kidney stones of 1-3 cm, 1-2 cm, and 2-3 cm in diameter. We undertook a retrospective analysis of 74 patients with kidney stones who underwent RIRS. The patients were divided into two groups based on stone composition: Group I (n=47) (calcium oxalate monohydrate and calcium phosphate) was the hard to fragment stone group and group II (n=27) (calcium oxalate dihydrate, magnesium ammonium phosphate, and uric acid) was the easy to fragment stone group. Forty-six patients with kidney stones 1 to 2 cm in diameter were divided into group A (n=30) (smaller than 20 mm, hard to fragment stones) and group B (n=16) (smaller than 20 mm, easy to fragment stones). Twenty-eight patients with stones 2 to 3 cm in diameter were divided into group C (n=17) (larger than 20 mm, hard to fragment stones) and group D (n=11) (larger than 20 mm, easy-to-crush stones). The stone clearance rates of group I and group II were 66.0% and 88.9%, respectively (P<0.05). The stone clearance rates of group A and group B were 73.3% and 100% (P<0.05). The stone clearance rates of group C and group D were 52.9% and 72.7%, respectively. Stone composition has a significant impact on the efficacy of RIRS in the management of 1 to 3 cm kidney stones. For 2-3 cm calcium oxalate dihydrate stones, uric acid stones, and magnesium ammonium phosphate stones, the outcome of RIRS treatment was relatively good, and RIRS is recommended.

CT visible internal stone structure, but not Hounsfield unit value, of calcium oxalate monohydrate (COM) calculi predicts lithotripsy fragility in vitro.

PubMed

Zarse, Chad A; Hameed, Tariq A; Jackson, Molly E; Pishchalnikov, Yuri A; Lingeman, James E; McAteer, James A; Williams, James C

2007-08-01

Calcium oxalate monohydrate (COM) stones are often resistant to breakage using shock wave (SW) lithotripsy. It would be useful to identify by computed tomography (CT) those COM stones that are susceptible to SW's. For this study, 47 COM stones (4-10 mm in diameter) were scanned with micro CT to verify composition and also for assessment of heterogeneity (presence of pronounced lobulation, voids, or apatite inclusions) by blinded observers. Stones were then placed in water and scanned using 64-channel helical CT. As with micro CT, heterogeneity was assessed by blinded observers, using high-bone viewing windows. Then stones were broken in a lithotripter (Dornier Doli-50) over 2 mm mesh, and SW's counted. Results showed that classification of stones using micro CT was highly repeatable among observers (kappa = 0.81), and also predictive of stone fragility. Stones graded as homogeneous required 1,874 +/- 821 SW/g for comminution, while stones with visible structure required half as many SW/g, 912 +/- 678. Similarly, when stones were graded by appearance on helical CT, classification was repeatable (kappa = 0.40), and homogeneous stones required more SW's for comminution than did heterogeneous stones (1,702 +/- 993 SW/g, compared to 907 +/- 773). Stone fragility normalized to stone size did not correlate with Hounsfield units (P = 0.85). In conclusion, COM stones of homogeneous structure require almost twice as many SW's to comminute than stones of similar mineral composition that exhibit internal structural features that are visible by CT. This suggests that stone fragility in patients could be predicted using pre-treatment CT imaging. The findings also show that Hounsfield unit values of COM stones did not correlate with stone fragility. Thus, it is stone morphology, rather than X-ray attenuation, which correlates with fragility to SW's in this common stone type.

A comparative study of mud-like and coralliform calcium carbonate gallbladder stones.

PubMed

Ma, Rui-Hong; Luo, Xiao-Bing; Wang, Xiao-Feng; Qiao, Tie; Huang, Hai-Yi; Zhong, Hai-Qiang

2017-07-01

To gain insight to underlying mechanism of the formation of calcium carbonate (CaCO 3 ) gallbladder stones, we did comparative study of stones with mud appearance and those with coralliform appearance. A total of 93 gallbladder stones with mud appearance and 50 stones with coralliform appearance were analyzed. The appearance, color, texture, and the detection of Clonorchis sinensis eggs by microscopic examination were compared between the two groups. Then, the material compositions of stones were analyzed using Fourier Transform Infrared spectroscopy and the spectrogram characteristics were compared. Moreover, microstructure characteristics of the two kinds of stones were observed and compared with Scanning Electron Microscopy. Mud-like gallbladder stones were mainly earthy yellow or brown with brittle or soft texture, while coralliform stones were mainly black with extremely hard texture, the differences between the two groups was significant (p < .05). The analytic results of FTIR spectroscopy showed that 95.7% (89/93) of the mud-like gallbladder stones were CaCO 3 stones, and mainly aragonite; while all of the coralliform stones were CaCO 3 stones, and mainly calcite (p < .05). Meanwhile, microscopic examination indicated that the detection rate of Clonorchis sinensis eggs in mud-like CaCO 3 stones was lower than that in coralliform CaCO 3 stones (p < .05), and that in aragonite CaCO 3 stones was lower than that in calcite CaCO 3 stones(p < .05). Mud-like CaCO 3 stones mainly happened to patients with cystic duct obstruction. Clonorchis sinensis infection was mainly associated with coralliform (calcite) CaCO 3 stones. Cystic duct obstruction was mainly associated with mud-like (aragonite) CaCO 3 stones. © 2017 Wiley Periodicals, Inc.

Is There A Difference Between Presence of Single Stone And Multiple Stones in Flexible Ureterorenoscopy And Laser Lithotripsy For Renal Stone Burden < 300mm2 ?

PubMed

Ozgor, Faruk; Kucuktopcu, Onur; Ucpinar, Burak; Gurbuz, Zafer Gokhan; Sarilar, Omer; Berberoglu, Ahmet Yalcin; Baykal, Murat; Binbay, Murat

2016-01-01

In this study, we aim to evaluate and compare the effectiveness of flexible ureterorenoscopy (f-URS) for solitary and multiple renal stones with < 300 mm2 stone burden. Patients' charts who treated with f-URS for kidney stone between January 2010 and June 2015 were reviewed, retrospectively. Patients with solitary kidney stones (n:111) were enrolled in group 1. We selected 111 patients with multiple kidney stones to serve as the control group and the patients were matched at a 1:1 ratio with respect to the patient's age, gender, body mass index and stone burden. Additionally, patients with multiple stones were divided into two groups according to the presence or abscence of lower pole stones. Stone free status was accepted as complete stone clearence and presence of residual fragments < 2 mm. According to the study design; age, stone burden, body mass index were comparable between groups. The mean operation time was longer in group 2 (p= 0.229). However, the mean fluoroscopy screening time in group 1 and in group 2 was 2.1±1.7 and 2.6±1.5 min, respectively and significantly longer in patients with multiple renal stones (P=0.043). The stone-free status was significantly higher in patients with solitary renal stones after a single session procedure (p=0.02). After third month follow up, overall success rate was 92.7% in Group 1 and 86.4% in Group 2. Our study revealed that F-URS achieved better stone free status in solitary renal stones < 300 mm2. However, outcomes of F-URS were acceptable in patients with multiple stones. Copyright® by the International Brazilian Journal of Urology.

Bacteria entombed in the center of cholesterol gallstones induce fewer infectious manifestations than bacteria in the matrix of pigment stones.

PubMed

Stewart, Lygia; Griffiss, J McLeod; Jarvis, Gary A; Way, Lawrence W

2007-10-01

The clinical significance of bacteria in the pigment centers of cholesterol stones is unknown. We compared the infectious manifestations and characteristics of bacteria from pigment stones and predominantly cholesterol stones. Three hundred forty patients were studied. Bile was cultured. Gallstones were cultured and examined with scanning electron microscopy. Level of bacterial immunoglobulin G (bile, serum), complement killing, and tumor necrosis factor-alpha production were determined. Twenty-three percent of cholesterol stones and 68% of pigment stones contained bacteria (P < 0.0001). Stone culture correlated with scanning electron microscopy results. Pigment stone bacteria were more often present in bile and blood. Cholesterol stone bacteria caused more severe infections (19%) than sterile stones (0%), but less than pigment stone bacteria (57%) (P < 0.0001). Serum and bile from patients with cholesterol stone bacteria had less bacterial-specific immunoglobulin G. Cholesterol stone bacteria produced more slime. Pigment stone bacteria were more often killed by a patient's serum. Tumor necrosis factor-alpha production of the groups was similar. Bacteria are readily cultured from cholesterol stones with pigment centers, allowing for analysis of their virulence factors. Bacteria sequestered in cholesterol stones cause infectious manifestations, but less than bacteria in pigment stones. Possibly because of their isolation, cholesterol stone bacteria were less often present in bile and blood, induced less immunoglobulin G, were less often killed by a patient's serum, and demonstrated fewer infectious manifestations than pigment stone bacteria. This is the first study to analyze the clinical relevance of bacteria within cholesterol gallstones.

Electronics for a Spectrometer

NASA Image and Video Library

2014-01-24

NASA has provided part of the electronics package for an instrument called the Double Focusing Mass Spectrometer, which is part of the Swiss-built Rosetta Orbiter Spectrometer for Ion and Neutral Analysis ROSINA instrument.

Coma dust scattering concepts applied to the Rosetta mission

NASA Astrophysics Data System (ADS)

Fink, Uwe; Rinaldi, Giovanna

2015-09-01

This paper describes basic concepts, as well as providing a framework, for the interpretation of the light scattered by the dust in a cometary coma as observed by instruments on a spacecraft such as Rosetta. It is shown that the expected optical depths are small enough that single scattering can be applied. Each of the quantities that contribute to the scattered intensity is discussed in detail. Using optical constants of the likely coma dust constituents, olivine, pyroxene and carbon, the scattering properties of the dust are calculated. For the resulting observable scattering intensities several particle size distributions are considered, a simple power law, power laws with a small particle cut off and a log-normal distributions with various parameters. Within the context of a simple outflow model, the standard definition of Afρ for a circular observing aperture is expanded to an equivalent Afρ for an annulus and specific line-of-sight observation. The resulting equivalence between the observed intensity and Afρ is used to predict observable intensities for 67P/Churyumov-Gerasimenko at the spacecraft encounter near 3.3 AU and near perihelion at 1.3 AU. This is done by normalizing particle production rates of various size distributions to agree with observed ground based Afρ values. Various geometries for the column densities in a cometary coma are considered. The calculations for a simple outflow model are compared with more elaborate Direct Simulation Monte Carlo Calculation (DSMC) models to define the limits of applicability of the simpler analytical approach. Thus our analytical approach can be applied to the majority of the Rosetta coma observations, particularly beyond several nuclear radii where the dust is no longer in a collisional environment, without recourse to computer intensive DSMC calculations for specific cases. In addition to a spherically symmetric 1-dimensional approach we investigate column densities for the 2-dimensional DSMC model on the day and night side of the comet. Our calculations are also applied to estimates of the dust particle densities and flux which are useful for the in-situ experiments on Rosetta.

An empirical model of H2O, CO2 and CO coma distributions and production rates for comet 67P/Churyumov-Gerasimenko based on ROSINA/DFMS measurements and AMPS-DSMC simulations

NASA Astrophysics Data System (ADS)

Hansen, Kenneth C.; Altwegg, Kathrin; Bieler, Andre; Berthelier, Jean-Jacques; Calmonte, Ursina; Combi, Michael R.; De Keyser, Johan; Fiethe, Björn; Fougere, Nicolas; Fuselier, Stephen; Gombosi, T. I.; Hässig, Myrtha; Huang, Zhenguang; Le Roy, Léna; Rubin, Martin; Tenishev, Valeriy; Toth, Gabor; Tzou, Chia-Yu; ROSINA Team

2016-10-01

We have previously used results from the AMPS DSMC (Adaptive Mesh Particle Simulator Direct Simulation Monte Carlo) model to create an empirical model of the near comet water (H2O) coma of comet 67P/Churyumov-Gerasimenko. In this work we create additional empirical models for the coma distributions of CO2 and CO. The AMPS simulations are based on ROSINA DFMS (Rosetta Orbiter Spectrometer for Ion and Neutral Analysis, Double Focusing Mass Spectrometer) data taken over the entire timespan of the Rosetta mission. The empirical model is created using AMPS DSMC results which are extracted from simulations at a range of radial distances, rotation phases and heliocentric distances. The simulation results are then averaged over a comet rotation and fitted to an empirical model distribution. Model coefficients are then fitted to piecewise-linear functions of heliocentric distance. The final product is an empirical model of the coma distribution which is a function of heliocentric distance, radial distance, and sun-fixed longitude and latitude angles. The model clearly mimics the behavior of water shifting production from North to South across the inbound equinox while the CO2 production is always in the South.The empirical model can be used to de-trend the spacecraft motion from the ROSINA COPS and DFMS data. The ROSINA instrument measures the neutral coma density at a single point and the measured value is influenced by the location of the spacecraft relative to the comet and the comet-sun line. Using the empirical coma model we can correct for the position of the spacecraft and compute a total production rate based on single point measurements. In this presentation we will present the coma production rates as a function of heliocentric distance for the entire Rosetta mission.This work was supported by contracts JPL#1266313 and JPL#1266314 from the US Rosetta Project and NASA grant NNX14AG84G from the Planetary Atmospheres Program.

The Noble Gas Abundances in the Coma of Comet 67P/Churyumov-Gerasimenko from Rosetta/ROSINA

NASA Astrophysics Data System (ADS)

Rubin, M.; Altwegg, K.; Balsiger, H. R.; Berthelier, J. J.; Briois, C.; Combi, M. R.; De Keyser, J.; Fiethe, B.; Fuselier, S. A.; Gasc, S.; Gombosi, T. I.; Hansen, K. C.; Jäckel, A.; Kopp, E.; Korth, A.; Mall, U.; Marty, B.; Mousis, O.; Owen, T.; Reme, H.; Schuhmann, M.; Schroeder, I. R. H. G.; Semon, T.; Tzou, C. Y.; Waite, J. H., Jr.; Wurz, P.

2017-12-01

The Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA), the mass spectrometer suite on board the European Space Agency's Rosetta mission, was dedicated to the measurement of the volatiles in the coma of comet 67P/Churyumov-Gerasimenko (67P) [1]. Among many other species, ROSINA DFMS, the Double Focusing Mass Spectrometer, detected and quantified the three noble gases argon, krypton, and xenon including their major isotopes [2,3]. Noble gases provide important clues to the physical and chemical conditions during and possibly even before and after the comet's formation in the early solar system. Furthermore, measurements of the isotope ratios provide constraints on the amount of cometary material brought to Earth and its early atmosphere. In this presentation, we will report on the measured coma densities and derived nucleus bulk abundances of these three noble gases and investigate correlations with other volatiles. Furthermore, we will discuss the measured isotope ratios and the implications of these results. AcknowledgementsUoB was funded by the State of Bern, the Swiss National Science Foundation and by the European Space Agency PRODEX Programme. Work at MPS was funded by the Max-Planck Gesellschaft and BMWI (contract 50QP1302), at Southwest Research institute by Jet Propulsion Laboratory (subcontract #1496541 and JPL subcontract to JWH NAS703001TONMO710889), at the University of Michigan by NASA (contract JPL-1266313). This work has been supported through the A*MIDEX project from the French National Research Agency (ANR) (n° ANR-11-IDEX- 0001-02) and by CNES grants at IRAP, LATMOS, LPC2E, LAM, CRPG, by the European Research Council (grant no. 267255 to B. Marty) and at BIRA-IASB by the Belgian Science Policy Office via PRODEX/ROSINA PEA C4000107705. References[1] Balsiger, H., et al., Rosina - Rosetta orbiter spectrometer for ion and neutral analysis. Space Science Reviews. 128, 745-801, 2007. [2] Balsiger, H., et al., Detection of argon in the coma of comet 67P/Churyumov-Gerasimenko. Sci Adv. 1, e1500377, 2015. [3] Marty B., et al., Xenon isotopes in 67P/Churyumov-Gerasimenko show that comets contributed to Earth's atmosphere, Science, 356, 1069 - 1072, 2017.

Nile Delta exhibited a spatial reversal in the rates of shoreline retreat on the Rosetta promontory comparing pre- and post-beach protection

NASA Astrophysics Data System (ADS)

Ghoneim, Eman; Mashaly, Jehan; Gamble, Douglas; Halls, Joanne; AbuBakr, Mostafa

2015-01-01

The coastline of the Nile Delta experienced accelerated erosion since the construction of the Aswan High Dam in 1964 and, consequently, the entrapment of a large amount of river sediments behind it. The coastline of the Rosetta promontory showed the highest erosion in the Delta with an average retreat rate of 137.4 m year- 1. In 1991, in an effort to mitigate sediment loss, a 4.85 km long seawall was built on the outer margin of the promontory. For additional beach protection, 15 groins were constructed along the eastern and western sides of the seawall in 2003 and 2005. To quantify erosion and accretion patterns along the Rosetta promontory, 11 Landsat images acquired at unequal intervals during a 40 year time span (1972 and 2012) were analyzed. The positions of shorelines were automatically extracted from satellite imagery and compared with three very high resolution QuickBird and WorldView2 images for data validation. Analysis of the rates of shoreline change revealed that the construction of the seawall was largely successful in halting the recession along the tip of the promontory, which lost 10.8 km2 prior to coastal protection. Conversely, the construction of the 15 groins has negatively affected the coastal morphology of the promontory and caused a reversal from accretion to fast erosion along the promontory leeside, where some segments of the shoreline have undergone as much as 30.8 m year- 1 of erosion. Without hard structures, the tip of the Rosetta promontory would have retreated 2.3 km by 2013 and lost 7.2 km2 of land. About 10% of this land is deltaic fertile cultivated farms. Moreover, without additional protection the sides of the promontory will lose about 1.3 km2 of land and the coastline would recede at an average rate of 200 m by 2020. Unless action is taken, coastal erosion, enhanced by rising sea level, will steadily eat away the Nile Delta at an alarming rate. The successful demonstration of the advocated procedures in this study could be adopted, with appropriate modifications, for other deltas worldwide.

Laboratory polarization and permittivity measurements to interpret dust polarimetric observations and in-situ radar studies. Significance for Rosetta mission at 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Levasseur-Regourd, Anny-Chantal; Brouet, Yann; Hadamcik, Edith; Heggy, Essam; Hines, Dean; Lasue, Jérémie; Renard, Jean-Baptiste

2015-08-01

Polarimetric astronomical observations on dust clouds and regolithic surfaces require laboratory simulations on samples to provide information on properties (size distribution, porosity, refractive index) of the scattering media. Similarly, in-situ radar investigations in the solar system require laboratory studies on samples to infer physical properties (e.g. porosity, ice/dust ratio) of sub-surfaces and interiors. Recent developments are illustrated with present studies related to the Rosetta mission, which begun its rendezvous with comet 67P/Churyumov-Gerasimeko (C-G) and landed the Philae module on its nucleus in 2014.We will summarize laboratory simulations with the PROGRA2 suite of instruments that study (in the visible to near IR domain) the polarimetric properties of dust samples in microgravity conditions or on surfaces [1], with emphasis on the interpretation of polarimetric observations of C-G, during its previous perihelion passages from Earth observatories, and currently from HST [2,3]. The presence of large dust particles in the pre-perihelion coma previously inferred from remote observations agrees with Rosetta ground truth [4]. We will also present measurements on the permittivity (in the millimeter to meter domain) of various dust samples, with emphasis on porous samples [5,6]. Results provide constraints on the properties of the subsurface and interior of C-G, as explored by MIRO on Rosetta and CONSERT on Philae.Such studies are relevant for the interpretation of polarimetric observations of other dust clouds (e.g. debris disks, interplanetary dust cloud, clouds in planetary atmospheres) and surfaces (e.g. planets, moons), as well as for those of other radar characterization studies (e.g. Mars, moons, asteroids).[1] Levasseur-Regourd et al. In Polarization of stars and planetary systems, Cambridge UP, in press 2015.[2] Hadamcik et al. A&A 517 2010.[3] Hines and Levasseur-Regourd, PSS submitted 2015.[4] Schulz et al. Nature 518 2015.[5] Heggy et al. 2012, Icarus 221 2012.[6] Brouet et al. A&A submitted 2015.

Archival of Amateur Observations in Support to ESA/Rosetta Mission

NASA Astrophysics Data System (ADS)

Shirinian, R.; Yanamandra-Fisher, P. A.; Buratti, B. J.

2016-12-01

The European Space Agency's Rosetta mission to comet 67P/Churyumov-Gerasimenko (CG) has included a global ground-based observing campaign consisting of both professional and amateur observers. While professional observers have access to world class observatories with multi-spectral instruments, amateur observers use smaller aperture telescopes that mainly cover the optical spectrum. Amateur observers however, have the advantage of being able to observe as needed since their time is not competed by other observers as it is in professional facilities. This allows amateurs to create a temporal baseline of observations throughout a mission to complement professional observations with context. The Rosetta mission has had an active amateur observer campaign for over 2 years, from January 2014 to August 2016 and has nearly 150 active observers from around the globe. As the Rosetta mission and its observer campaign come to an end in September 2016, an important goal of the project is the collection and archival of the amateur observational data. The ESA's Planetary Science Archive (PSA) has created a unique system that provides firewalled user-specific directories for amateur observers to upload and archive their data, allowing professionals and amateurs to crowdsource data for future science analyses. Possible future science products could include analysis of luminosity, dust cover, position angle, and tail length, all of which can be analyzed over time due to the consistent amateur data taken for over two years. A challenge for the project is that amateur observers have varying amounts of data, ranging from a few megabytes to several gigabytes. Our project addresses the retrieval of amateur observations, renaming, reformatting, and upload to the PSA. The final steps of the archival of amateur observations are the quality check of the data, some of the possible analyses, and identification of data that can be integrated with professional data analysis. The unique integration of amateur observations and professional observations will be crowdsourced for future scientific analysis. This research project was conducted at NASA/JPL/Caltech with funding from NASA and the NSF REU site Consortium for Undergraduate Research Experiences (CURE) ran through LACC.

Small is different: RPC observations of a small scale comet interacting with the solar wind

NASA Astrophysics Data System (ADS)

Nilsson, Hans; Burch, James L.; Carr, Christopher M.; Eriksson, Anders I.; Glassmeier, Karl-Heinz; Henri, Pierre; Rosetta Plasma Consortium Team

2016-10-01

Rosetta followed comet 67P from low activity at more than 3 AU heliocentric distance to peak activity at perihelion and then out again. We study the evolution of the dynamic plasma environment using data from the Rosetta Plasma Consortium (RPC). Observations of cometary plasma began in August 2014, at a distance of 100 km from the comet nucleus and at 3.6 AU from the Sun. As the comet approached the Sun, outgassing from the comet increased, as did the density of the cometary plasma. Measurements showed a highly heterogeneous cold ion environment, permeated by the solar wind. The solar wind was deflected due to the mass loading from newly added cometary plasma, with no discernible slowing down. The magnetic field magnitude increased significantly above the background level, and strong low frequency waves were observed in the magnetic field, a.k.a. the "singing comet". Electron temperatures were high, leading to a frequently strongly negative spacecraft potential. In mid to late April 2015 the solar wind started to disappear from the observation region. This was associated with a solar wind deflection reaching nearly 180°, indicating that mass loading became efficient enough to form a solar wind-free region. Accelerated water ions, moving mainly in the anti-sunward direction, kept being observed also after the solar wind disappearance. Plasma boundaries began to form and a collisionopause was tentatively identified in the ion and electron data. At the time around perihelion, a diamagnetic cavity was also observed, at a surprisingly large distance from the comet. In late 2016 the solar wind re-appeared at the location of Rosetta, allowing for studies of asymmetry of the comet ion environment with respect to perihelion. A nightside excursion allowed us to get a glimpse of the electrodynamics of the innermost part of the plasma tail. Most of these phenomena are dependent on the small-scale physics of comet 67P, since for most of the Rosetta mission the solar wind - comet atmosphere interaction region is smaller than the pickup ion gyroradius in the undisturbed solar wind.

Hydrogen halides at Comet 67P/Churyumov-Gerasimenko as detected by ROSINA-DFMS

NASA Astrophysics Data System (ADS)

Dhooghe, Frederik

2017-04-01

The Rosetta spacecraft has been studying the coma of comet 67P/Churyumov-Gerasimenko (67P/C-G) in-situ from the comet encounter in August 2014 up to end of mission in September 2016. The Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA) contains a double focussing mass spectrometer (DFMS) with a mass range 13-140 u/e. It is optimized for high mass resolution and large dynamic range for the chemical and isotopic characterization of the volatiles in the coma. Since comets retained information about the physical and chemical conditions of the protoplanetary disk from which they formed, they may provide insights into the halogen chemistry in the early Solar System. We have studied the halogen-bearing compounds in the coma with DFMS on 67P/C-G's inbound journey during four periods, as the gas production increased towards perihelion and as the comet's subsolar latitude moved from the northern to the southern hemisphere: (A) when Rosetta was close to the comet, during 1-31/10/2014, at 3.0-3.3 AU, (B) during the close flybys on 14/2/2015 and on 28/3/2015 at 2.3 AU and 2.0 AU, (C) post-equinox between 10/5/2015 and 1/6/2015, at 1.5-1.7 AU, and (D) around perihelion between 9/7/2015 and 31/8/2015, at 1.24-1.31 AU. The main halogen-bearing compounds in the comet atmosphere were found to be the hydrogen halides HF (hydrogen fluoride), HCl (hydrogen chloride) and HBr (hydrogen bromide). HF and HCl could be observed during all four periods, while hydrogen bromide could, due to its low abundance, only be detected during period A, when Rosetta was close to the comet. An increase in the halogen-to-oxygen ratio as a function of distance was observed which suggests a distributed source for HF and HCl, probably through progressive release of these compounds from grains. This contribution will address the abundance and variability of the hydrogen halides in the coma as well as the cometary isotopic ratios for 37Cl/35Cl and 81Br/79Br.

Monitoring Comet 67P/C-G Micrometer Dust Flux: GIADA onboard Rosetta.

NASA Astrophysics Data System (ADS)

Della Corte, Vincenzo; Rotundi, Alessandra; Ivanovski, Stavro; Accolla, Mario; Ferrari, Marco; Sordini, Roberto; Lucarelli, Francesca; Zakharov, Vladimir; Fulle, Marco; Mazzotta Epifani, Elena; López-Moreno, José J.; Rodríguez, Julio; Colangeli, Luigi; Palumbo, Pasquale; Bussoletti, Ezio; Crifo, Jean-Francois; Esposito, Francesca; Green, Simon F.; Grün, Eberhard; Lamy, Philippe L.

2015-04-01

(21)ESA-ESAC, Camino Bajo del Castillo, s/n., Urb. Villafranca del Castillo, 28692 Villanueva de la Cañada, Madrid, Spagna The MicroBalance System (MBS) is one of the three measurement subsystems of GIADA, the Grain Impact Analyzer and Dust Accumulator on board the Rosetta/ESA spacecraft (S/C). It consists of five Quartz Crystal Microbalances (QCMs) in roughly orthogonal directions providing the cumulative dust flux of grains smaller than 10 microns. The MBS is continuously monitoring comet 67P/CG since the beginning of May 2014. During the first 4 months of measurements, before the insertion of the S/C in the bound orbit phase, there were no evidences of dust accumulation on the QCMs. Starting from the beginning of October, three out of five QCMs measured an increase of the deposited dust. The measured fluxes show, as expected, a strong anisotropy. In particular, the dust flux appears to be much higher from the Sun direction with respect to the comet direction. Acknowledgment: GIADA was built by a consortum led by the Univ. Napoli "Parthenope" & INAF- Oss. Astr. Capodimonte, in collaboration with the Inst. de Astrofisica de Andalucia, Selex-ES, FI and SENER. GIADA is presently managed & operated by Ist. di Astrofisica e Planetologia Spaziali-INAF, IT. GIADA was funded and managed by the Agenzia Spaziale Italiana, IT, with the support of the Spanish Ministry of Education and Science MEC, ES. GIADA was developed from a PI proposal from the University of Kent; sci. & tech. contribution were provided by CISAS, IT, Lab. d'Astr. Spat., FR, and Institutions from UK, IT, FR, DE and USA. We thank the RSGS/ESAC, RMOC/ESOC & Rosetta Project/ESTEC for their out-standing work. Science support provided was by NASA through the US Rosetta Project managed by the Jet Propulsion Laboratory/ California Institute of Technology. GIADA calibrated data will be available through ESA's PSA web site (www.rssd.esa.int/index.php? project=PSA&page=in dex). We would like to thank Angioletta Coradini for her contribution as a GIADA Co-I.

Flexible Ureterorenoscopy for Treatment of Kidney Stones: Establishment as Primary Standard Therapy in a Tertiary Stone Center.

PubMed

Ising, Stephan; Labenski, Heike; Baltes, Stefan; Khaffaf, Aso; Thomas, Christian; Wiesner, Christoph

2015-01-01

To analyze the primary stone free rate (pSFR) of flexible ureterorenoscopy (fURS) in the treatment of renal stones and to identify clinical predictors for the primary freedom from renal stones. Two hundred and seventy five patients, who underwent fURS for kidney stones were analyzed. Index stone size was 6 mm. The stone was located in the lower calyx in 48%. Ureteral access sheath was used in 97%. Operation time was 35 min and primary stone clearance was 83%. pSFR increased from 74% in 2012 to 83% in 2013 and 90% in 2014 (p = 0.001). Preoperative stenting, index stone size, cumulative stone size, lithotripsy, ureteral access sheath and operation time were significantly correlated with the pSFR by univariate analysis. Multivariate regression analysis showed index stone size, cumulative stone size, ureteral access sheath and operation time as independent parameters for pSFR. fURS for kidney stones is safe with a high pSFR. Clinical parameters for pSFR are stone size, use of ureteral access sheath and operation time. In future, the effective use of fURS for the removal of kidney stones needs to be checked by prospective randomized trials. © 2015 S. Karger AG, Basel.

Ureteroscopic treatment of larger renal calculi (>2 cm).

PubMed

Bagley, Demetrius H; Healy, Kelly A; Kleinmann, Nir

2012-09-01

To evaluate the current status of ureteroscopic lithotripsy (UL) for treating renal calculi of >2 cm, as advances in flexible ureteroscope design, accessory instrumentation and lithotrites have revolutionised the treatment of urinary calculi. While previously reserved for ureteric and small renal calculi, UL has gained an increasing role in the selective management of larger renal stone burdens. We searched the available databases, including PubMed, Google Scholar, and Scopus, for relevant reports in English, and the article bibliographies to identify additional relevant articles. Keywords included ureteroscopy, lithotripsy, renal calculi, and calculi >2 cm. Retrieved articles were reviewed to consider the number of patients, mean stone size, success rates, indications and complications. In all, nine studies (417 patients) were eligible for inclusion. After one, two or three procedures the mean (range) success rates were 68.2 (23-84)%, 87.1 (79-91)% and 94.4 (90.1-96.7)%, respectively. Overall, the success rate was >90% with a mean of 1.2-2.3 procedures per patient. The overall complication rate was 10.3%, including six (1.4%) intraoperative and 37 (8.9%) postoperative complications, most of which were minor. The most common indications for UL were a failed previous treatment (46%), comorbidities (18.2%), and technical and anatomical factors (12.3%). UL is safe and effective for treating large renal calculi. While several procedures might be required for total stone clearance, UL should be considered a standard approach in the urologist's options treating renal calculi of >2 cm.

Pneumatic ureteroscopic lithotripsy: is it still a reasonable treatment option for multiple ureteric stones?

PubMed

Isen, Kenan

2012-01-01

To assess the efficacy and safety of ureteroscopic pneumatic lithotripsy for multiple ureteric stones. 36 patients with multiple ureteric stones were treated with ureteroscopic lithotripsy (URSL). A 8/9.8-Fr Wolf semirigid ureteroscope and pneumatic lithotripter were used for stone fragmentation. 87 stones were treated with URSL. Successful fragmentation was achieved in 77 (88.5%) of the stones. The retreatment rate was 11.5%. The stone-free rate (SFR) of lower ureteric stones (93.3%) and middle ureteric stones (87.5%) was significantly higher compared with upper (73.3%) ureteric stones (p < 0.05). For patients with stones less than 1 cm and greater than 1 cm, the SFR was 91.5 and 75.0%, respectively (p < 0.05). Perforation occurred in 1 patient, mucosal injury occurred in 5 and stone migration in 5. No long-term complication was observed in any patient. Ureteroscopic pneumatic lithotripsy is still a reasonable treatment option for multiple ureteric stones. The procedure has high success rates with minimal morbidity. However, success rate can be affected by stone size and ureteric location. Copyright © 2012 S. Karger AG, Basel.

The use of chemical treatments for improved comminution of artificial stones.

PubMed

Heimbach, D; Kourambas, J; Zhong, P; Jacobs, J; Hesse, A; Mueller, S C; Delvecchio, F C; Cocks, F H; Preminger, G M

2004-05-01

The acoustic and mechanical properties of various stone compositions are significantly different and thus result in varying degrees of fragility. Consequently, results to shock wave lithotripsy (SWL) are influenced accordingly. We report the results of a study of fragility of various stone compositions, and the influence on each stone's baseline physical properties and fragility when exposed to various chemolytic solutions. Before SWL artificial stones of differing compositions were irrigated with various chemolytic solutions. Calcium oxalate monohydrate (COM) stones were treated with ethylenediaminetetraacetic acid (EDTA), stones composed of magnesium ammonium phosphate hydrogen were treated with hemiacidrin, and stones made of uric acid (UA) were treated with tromethamine. Synthetic urine served as a control for all stone groups. Using an ultrasound transmission technique, longitudinal wave propagation speed was measured in all groups of artificial stones. Stone density was also measured by using a pycnometer (based on Archimedes' principle). Based on these measurements transverse (shear) wave speed (assuming a constant Poisson's ratio), wave impedance and dynamic mechanical properties of the artificial stones were calculated. Moreover, the microhardness of these artificial stones was measured, and fragility testing using SWL with and without pretreatment with the previously mentioned chemolytic solutions, was performed. Wave speed, wave impedance, dynamic mechanical properties and microhardness of EDTA treated COM stones and tromethamine treated UA stones were found to decrease compared to untreated (synthetic urine) control groups. The suggestion that chemolytic pretreatment increases stone fragility was verified by the finding of increased stone comminution after SWL testing. Combining this medical pretreatment and SWL, the findings demonstrate a significant impact of various solvents on stone comminution, in particular EDTA treated COM stones, tromethamine treated UA stones and hemiacidrin treated magnesium ammonium phosphate hydrogen stones. These data suggest that by altering the chemical environment of the fluid surrounding the stones it is possible to increase the fragility of renal calculi in vitro. These results indicate that appropriate chemical treatments may provide a useful adjunctive modality for improving the efficacy of stone comminution during shock wave lithotripsy.

Kidney stones during pregnancy: an investigation into stone composition.

PubMed

Ross, Ashley E; Handa, Shelly; Lingeman, James E; Matlaga, Brian R

2008-05-01

Kidney stones can be a source of considerable morbidity for pregnant women. Although there is a body of literature confirming that different stone compositions predominate for different age and sex cohorts, there have been no similar reports characterizing the nature of stone disease during pregnancy. We performed a multi-institutional study to define the composition of renal calculi diagnosed during pregnancy. We retrospectively reviewed the records from two stone referral centers of all patients diagnosed with a de novo kidney stone during pregnancy who underwent a procedure for the purpose of stone removal from June 2001 through September 2007. A total of 27 patients were identified, with a mean age of 26.8 years (range, 21-34). Twenty patients (74%) had no history of prior stone formation. Seven patients (26%) had previously formed stones, although none of these patients had a known kidney stone at the time they became pregnant. Stones were removed in the first, second, third trimester and immediately post-partum in 4, 52, 22, and 22% respectively. Stone removal was performed without complication in all cases. Analysis found that in 74% of all cases (20 patients) stones were composed predominantly of calcium phosphate (hydroxyapatite). In 26% of cases, (7 patients) the stones were composed predominantly of calcium oxalate. Of the seven patients with prior stone history, three patients had previously formed calcium phosphate stones and four patients had previously formed calcium oxalate stones. Calcium oxalate calculi are the most common stone in non-pregnant women of a comparable age as our subjects. However, our present data suggest that stones detected during pregnancy are most commonly composed of calcium phosphate (hydroxyapatite). Indeed, it is the minority of stones that are composed of calcium oxalate. Although the reason for this unusual preponderance of calcium phosphate calculi is unclear, physiologic alterations that occur during pregnancy may be influential.

Guaifenesin stone matrix proteomics: a protocol for identifying proteins critical to stone formation.

PubMed

Kolbach-Mandel, A M; Mandel, N S; Cohen, S R; Kleinman, J G; Ahmed, F; Mandel, I C; Wesson, J A

2017-04-01

Drug-related kidney stones are a diagnostic problem, since they contain a large matrix (protein) fraction and are frequently incorrectly identified as matrix stones. A urine proteomics study patient produced a guaifenesin stone during her participation, allowing us to both correctly diagnose her disease and identify proteins critical to this drug stone-forming process. The patient provided three random midday urine samples for proteomics studies; one of which contained stone-like sediment with two distinct fractions. These solids were characterized with optical microscopy and Fourier transform infrared spectroscopy. Immunoblotting and quantitative mass spectrometry were used to quantitatively identify the proteins in urine and stone matrix. Infrared spectroscopy showed that the sediment was 60 % protein and 40 % guaifenesin and its metabolite guaiacol. Of the 156 distinct proteins identified in the proteomic studies, 49 were identified in the two stone-components with approximately 50 % of those proteins also found in this patient's urine. Many proteins observed in this drug-related stone have also been reported in proteomic matrix studies of uric acid and calcium containing stones. More importantly, nine proteins were highly enriched and highly abundant in the stone matrix and 8 were reciprocally depleted in urine, suggesting a critical role for these proteins in guaifenesin stone formation. Accurate stone analysis is critical to proper diagnosis and treatment of kidney stones. Many matrix proteins were common to all stone types, but likely not related to disease mechanism. This protocol defined a small set of proteins that were likely critical to guaifenesin stone formation based on their high enrichment and high abundance in stone matrix, and it should be applied to all stone types.

Evaluation of stone volume distribution in renal collecting system as a predictor of stone-free rate after percutaneous nephrolithotomy: a retrospective single-center study.

PubMed

Atalay, Hasan Anıl; Canat, Lutfi; Bayraktarlı, Recep; Alkan, Ilter; Can, Osman; Altunrende, Fatih

2017-06-23

We analyzed our stone-free rates of PNL with regard to stone burden and its ratio to the renal collecting system volume. Data of 164 patients who underwent PNL were analyzed retrospectively. Volume segmentation of renal collecting system and stones were done using 3D segmentation software with the images obtained from CT data. Analyzed stone volume (ASV) and renal collecting system volume (RCSV) were measured and the ASV-to-RCSV ratio was calculated after the creation of a 3D surface volume rendering of renal stones and the collecting system. Univariate and multivariate statistical analyses were performed to determine factors affecting stone-free rates; also we assessed the predictive accuracy of the ASV-to-RCSV ratio using the receiving operating curve (ROC) and AUC. The stone-free rate of PNL monotherapy was 53% (164 procedures).The ASV-to-RCSV ratio and calyx number with stones were the most influential predictors of stone-free status (OR 4.15, 95% CI 2.24-7.24, <0.001, OR 2.62, 95% CI 1.38-4.97, p < 0.001, respectively). Other factors associated with the stone-free rate were maximum stone size (p < 0.029), stone surface area (p < 0.010), and stone burden volume (p < 0.001). Predictive accuracy of the ASV-to-RCSV ratio was AUC 0.76. Stone burden volume distribution in the renal collecting system, which is calculated using the 3D volume segmentation method, is a significant determinant of the stone-free rate before PCNL surgery. It could be used as a single guide variable by the clinician before renal stone surgery to predict extra requirements for stone clearance.

Cystine Stone Formers Have Impaired Health-Related Quality of Life Compared with Noncystine Stone Formers: A Case-Referent Study Piloting the Wisconsin Stone Quality of Life Questionnaire Among Patients with Cystine Stones.

PubMed

Streeper, Necole M; Wertheim, Margaret L; Nakada, Stephen Y; Penniston, Kristina L

2017-04-01

Cystinuria is a rare cause of urolithiasis. Affected patients have an earlier onset and more aggressive disease than patients with other stone etiologies. We assessed the health-related quality of life (HRQOL) of cystine stone-forming patients using the disease-specific Wisconsin Stone Quality of Life questionnaire (WISQOL). Cystine patients treated in our stone clinics (n = 12) completed the WISQOL; information about medical and stone histories was gathered. Patients were matched with noncystine stone formers (n = 12) for gender, age, and comorbidities. In addition, a second control group (n = 90), also from our institution and consisting of mixed calcium stone formers, was included. WISQOL responses were compared between groups. Cystine patients had significantly lower total WISQOL scores than noncystine patients. Compared with noncystine stone formers, cystine stone formers also had lower HRQOL scores for subscales (domains) related to social impact, emotional impact, disease impact, and vitality (p ≤ 0.04 for all). On specific items, cystine patients reported significantly more sleep problems (p = 0.02), more bother with nocturia (p = 0.03), and feeling tired or fatigued (p = 0.02). Among those with current stones, cystine patients scored lower than noncystine patients for total score and in two of four domains. Using a stone-specific questionnaire, patients with cystine stones have lower HRQOL compared with noncystine stone formers. Identifying and addressing specific areas of decrement in patients with cystine stones may improve disease management and patients' HRQOL.

Definition and Facts for Kidney Stones in Adults

MedlinePlus

... Eating, Diet, & Nutrition Clinical Trials Definition & Facts for Kidney Stones What are kidney stones? Kidney stones are hard, pebble-like pieces ... stone may get stuck along the way. Do kidney stones have another name? The scientific name for ...

Extracorporeal shock wave lithotripsy of proximal and distal ureteral stones.

PubMed

Pettersson, B; Tiselius, H G

1988-01-01

Extracorporeal shock wave lithotripsy (ESWL) was used for treatment of 105 patients with ureteral stones. There were 77 stones in the upper part of the ureter, i.e. above the pelvic brim, and 28 in the lower part, i.e. below the sacroiliac joint. Successful fragmentation was attained in 101 (96%). In 93% of the patients with stones in the upper ureter and in 100% with stones in the lower ureter the fragments were eliminated completely. In 87% of the patients with stones in the upper ureter, a ureteral catheter was introduced under local anesthesia but without fluoroscopic control. It was thereby possible to remove 30% of the stones from the ureter to the kidney. For the remaining stones, saline was infused through the catheter during ESWL. For patients with stones in the lower part of the ureter, a ureteral catheter was passed in 79% and saline infused during treatment. Whereas some form of anesthesia was used for treatment of all upper ureteral stones, 89% of the treatments for lower ureteral stones were performed without anesthesia. Auxiliary procedures after ESWL were limited to four ureteral catheter manipulations for distal stones. Four proximal stones which remained unaffected by ESWL had to be treated by open surgery (3 stones) or percutaneous surgery (1 stone). Of 82 ureteric stones treated in situ the success fragmentation rate was 95%. The average number of ESWL sessions was 1.04 for both proximal and distal ureteral stones.

Metabolic Characteristics and Risks Associated with Stone Recurrence in Korean Young Adult Stone Patients.

PubMed

Kang, Ho Won; Seo, Sung Pil; Kim, Won Tae; Kim, Yong-June; Yun, Seok-Joong; Kim, Wun-Jae; Lee, Sang-Cheol

2017-08-01

The aim of this study was to assess the metabolic characteristics and risks of stone recurrence in young adult stone patients in Korea. The medical records of 1532 patients presenting with renal or ureteric stones at our stone clinic between 1994 and 2015 were retrospectively reviewed. Patients were grouped according to age (young adult, 18-29 years; intermediate onset, 30-59 years; old age, ≥60 years) at first presentation, and measurements of clinicometabolic characteristics and risks of stone recurrence were compared. Overall, excretion of urinary stone-forming substances was highest in the intermediate onset group, followed by the young adult and old age groups. Importantly, excretion of urinary citrate was lowest in the young adult group. Kaplan-Meier analyses identified a significant difference between the three age groups in terms of stone recurrence (log rank test, p < 0.001). Multivariate Cox regression analyses revealed that age at first stone presentation was an independent risk factor for stone recurrence. Urinary citrate excretion was an independent risk factor for stone recurrence in young adult stone patients. Younger age (18-29 years) at first stone presentation was a significant risk factor for stone recurrence, and urinary citrate excretion was an independent risk factor affecting recurrence in this group. Metabolic evaluation and potassium citrate therapy should be considered for young adult stone patients to prevent recurrence.

Appropriate kidney stone size for ureteroscopic lithotripsy: When to switch to a percutaneous approach

PubMed Central

Takazawa, Ryoji; Kitayama, Sachi; Tsujii, Toshihiko

2015-01-01

Flexible ureteroscopy (fURS) has become a more effective and safer treatment for whole upper urinary tract stones. Percutaneous nephrolithotomy (PNL) is currently the first-line recommended treatment for large kidney stones ≥ 20 mm and it has an excellent stone-free rate for large kidney stones. However, its invasiveness is not negligible considering its major complication rates. Staged fURS is a practical treatment for such large kidney stones because fURS has a minimal blood transfusion risk, short hospitalization and few restrictions on daily routines. However, as the stone size becomes larger, the stone-free rate decreases, and the number of operations required increases. Therefore, in our opinion, staged fURS is a practical option for kidney stones 20 to 40 mm. Miniaturized PNL combined with fURS should be considered to be a preferred option for stones larger than 40 mm. Moreover, URS is an effective treatment for multiple upper urinary tract stones. Especially for patients with a stone burden < 20 mm, URS is a favorable option that promises a high stone-free rate after a single session either unilaterally or bilaterally. However, for patients with a stone burden ≥ 20 mm, a staged operation should be considered to achieve stone-free status. PMID:25664253

Is scoring system of computed tomography based metric parameters can accurately predicts shock wave lithotripsy stone-free rates and aid in the development of treatment strategies?

PubMed Central

Badran, Yasser Ali; Abdelaziz, Alsayed Saad; Shehab, Mohamed Ahmed; Mohamed, Hazem Abdelsabour Dief; Emara, Absel-Aziz Ali; Elnabtity, Ali Mohamed Ali; Ghanem, Maged Mohammed; ELHelaly, Hesham Abdel Azim

2016-01-01

Objective: The objective was to determine the predicting success of shock wave lithotripsy (SWL) using a combination of computed tomography based metric parameters to improve the treatment plan. Patients and Methods: Consecutive 180 patients with symptomatic upper urinary tract calculi 20 mm or less were enrolled in our study underwent extracorporeal SWL were divided into two main groups, according to the stone size, Group A (92 patients with stone ≤10 mm) and Group B (88 patients with stone >10 mm). Both groups were evaluated, according to the skin to stone distance (SSD) and Hounsfield units (≤500, 500–1000 and >1000 HU). Results: Both groups were comparable in baseline data and stone characteristics. About 92.3% of Group A rendered stone-free, whereas 77.2% were stone-free in Group B (P = 0.001). Furthermore, in both group SWL success rates was a significantly higher for stones with lower attenuation <830 HU than with stones >830 HU (P < 0.034). SSD were statistically differences in SWL outcome (P < 0.02). Simultaneous consideration of three parameters stone size, stone attenuation value, and SSD; we found that stone-free rate (SFR) was 100% for stone attenuation value <830 HU for stone <10 mm or >10 mm but total number SWL sessions and shock waves required for the larger stone group were higher than in the smaller group (P < 0.01). Furthermore, SFR was 83.3% and 37.5% for stone <10 mm, mean HU >830, SSD 90 mm and SSD >120 mm, respectively. On the other hand, SFR was 52.6% and 28.57% for stone >10 mm, mean HU >830, SSD <90 mm and SSD >120 mm, respectively. Conclusion: Stone size, stone density (HU), and SSD is simple to calculate and can be reported by radiologists to applying combined score help to augment predictive power of SWL, reduce cost, and improving of treatment strategies. PMID:27141192

The mass of Lutetia from Rosetta RSI radio tracking

NASA Astrophysics Data System (ADS)

Pätzold, Martin; Andert, Thomas; Haeusler, Bernd; Tellmann, Silvia; Anderson, John D.; Asmar, Sami; Barriot, Jean-Pierre; Bird, Michael

The Rosetta spacecraft will flyby at its second target asteroid (21) Lutetia on 10 July 2010. Simulations based on the currently known size of Lutetia and assumptions on the bulk density show that the tracking of the two radio carrier frequencies at X-band (8.4 GHz) and S-band (2.3 GHz) during the flyby will yield a mass determination of less than a few percent accuracy, assuming noise conditions similar to those observed during several in-flight payload checkouts. The derivation of the asteroid volume by camera observation will be the driver for the un-certainty in the derivation of the bulk density. The mass determination alone, however, can already give clues for the currently unknown taxonomy of the asteroid type. If possible, first impressions and results from the flyby will be presented at the conference.

Plasma density structures at comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Engelhardt, I. A. D.; Eriksson, A. I.; Stenberg Wieser, G.; Goetz, C.; Rubin, M.; Henri, P.; Nilsson, H.; Odelstad, E.; Hajra, R.; Vallières, X.

2018-06-01

We present a Rosetta Plasma Consortium (RPC) case study based on four events in 2015 autumn at various radial distances, phase angles and local times, just after the perihelion of comet 67P/Churyumov-Gerasimenko. Pulse-like (high-amplitude, up to minutes in time) signatures are seen with several RPC instruments in the plasma density (with the LAngmuir Probe, LAP and Mutual Impedance Probe, MIP), ion energy and flux (with the Ion Composition Analyzer, ICA) and the magnetic field intensity (with the magnetometer, MAG). Furthermore, the cometocentric distance relative to the electron exobase is seen to be a good organizing parameter for the measured plasma variations. The closer Rosetta is to this boundary, the more pulses are measured. This is consistent with the pulses being filaments of plasma originating from the diamagnetic cavity boundary, as predicted by simulations.

MIRO Calibration Switch Mechanism

NASA Technical Reports Server (NTRS)

Suchman, Jason; Salinas, Yuki; Kubo, Holly

2001-01-01

The Jet Propulsion Laboratory has designed, analyzed, built, and tested a calibration switch mechanism for the MIRO instrument on the ROSETTA spacecraft. MIRO is the Microwave Instrument for the Rosetta Orbiter; this instrument hopes to investigate the origin of the solar system by studying the origin of comets. Specifically, the instrument will be the first to use submillimeter and millimeter wave heterodyne receivers to remotely examine the P-54 Wirtanen comet. In order to calibrate the instrument, it needs to view a hot and cold target. The purpose of the mechanism is to divert the instrument's field of view from the hot target, to the cold target, and then back into space. This cycle is to be repeated every 30 minutes for the duration of the 1.5 year mission. The paper describes the development of the mechanism, as well as analysis and testing techniques.

PconsFold: improved contact predictions improve protein models.

PubMed

Michel, Mirco; Hayat, Sikander; Skwark, Marcin J; Sander, Chris; Marks, Debora S; Elofsson, Arne

2014-09-01

Recently it has been shown that the quality of protein contact prediction from evolutionary information can be improved significantly if direct and indirect information is separated. Given sufficiently large protein families, the contact predictions contain sufficient information to predict the structure of many protein families. However, since the first studies contact prediction methods have improved. Here, we ask how much the final models are improved if improved contact predictions are used. In a small benchmark of 15 proteins, we show that the TM-scores of top-ranked models are improved by on average 33% using PconsFold compared with the original version of EVfold. In a larger benchmark, we find that the quality is improved with 15-30% when using PconsC in comparison with earlier contact prediction methods. Further, using Rosetta instead of CNS does not significantly improve global model accuracy, but the chemistry of models generated with Rosetta is improved. PconsFold is a fully automated pipeline for ab initio protein structure prediction based on evolutionary information. PconsFold is based on PconsC contact prediction and uses the Rosetta folding protocol. Due to its modularity, the contact prediction tool can be easily exchanged. The source code of PconsFold is available on GitHub at https://www.github.com/ElofssonLab/pcons-fold under the MIT license. PconsC is available from http://c.pcons.net/. Supplementary data are available at Bioinformatics online. © The Author 2014. Published by Oxford University Press.

Close-up multispectral images of the surface of comet 67P/Churyumov-Gerasimenko by the ROLIS camera onboard the Rosetta Philae lander

NASA Astrophysics Data System (ADS)

Schroeder, S.; Mottola, S.; Arnold, G.; Grothues, H. G.; Jaumann, R.; Michaelis, H.; Neukum, G.; Pelivan, I.; Bibring, J. P.

2014-12-01

In November 2014 the Philae lander onboard Rosetta is scheduled to land on the surface of comet 67P/Churyumov-Gerasimenko. The ROLIS camera will provide the ground truth for the Rosetta OSIRIS camera. ROLIS will acquire images both during the descent and after landing. In this paper we concentrate on the post-landing images. The close-up images will enable us to characterize the morphology and texture of the surface, and the shape, albedo, and size distribution of the particles on scales as small as 0.3 mm per pixel. We may see evidence for a dust mantle, a refractory crust, and exposed ice. In addition, we hope to identify features such as pores, cracks, or vents that allow volatiles to escape the surface. We will not only image the surface during the day but also the night, when LEDs will illuminate the surface in four different colors (blue, green, red, near-IR). This will characterize the spectral properties and heterogeneity of the surface, helping us to identify its composition. Although the ROLIS spectral range and resolution are too limited to allow an exact mineralogical characterization, a study of the spectral slope and albedo will allow a broad classification of the solid surface phases. We expect to be able to distinguish between organic material, silicates and ices. By repeated imaging over the course of the mission ROLIS may detect long term changes associated with cometary activity.

Rosetta Lander - Philae: activities after hibernation and landing preparations

NASA Astrophysics Data System (ADS)

Ulamec, Stephan; Biele, Jens; Sierks, Holger; Blazquez, Alejandro; Cozzoni, Barbara; Fantinati, Cinzia; Gaudon, Philippe; Geurts, Koen; Jurado, Eric; Paetz, Brigitte.; Maibaum, Michael

Rosetta is a Cornerstone Mission of the ESA Horizon 2000 programme. It is going to rendezvous with comet 67P/Churyumov-Gerasimenko after a ten year cruise and will study both its nucleus and coma with an orbiting spacecraft as well as with a Lander, Philae. Aboard Philae, a payload consisting of ten scientific instruments will perform in-situ studies of the cometary material. Rosetta and Philae have been in hibernation until January 20, 2014. After the successful wakeup they will undergo a post hibernation commissioning. The orbiter instruments (like e.g. the OSIRIS cameras) are to characterize the target comet to allow landing site selection and the definition of a separation, descent and landing (SDL) strategy for the Lander. By August 2014 our currently very poor knowledge of the characteristics of the nucleus of the comet will have increased dramatically. The paper will report on the latest updates in Separation-Descent-Landing (SDL) planning. Landing is foreseen for November 2014 at a heliocentric distance of 3 AU. Philae will be separated from the mother spacecraft from a dedicated delivery trajectory. It then descends ballistically to the surface of the comet, stabilized with an internal flywheel. At touch-down anchoring harpoons will be fired and a damping mechanism within the landing gear will provide the lander from re-bouncing. The paper will give an overview of the Philae system, the operational activities after hibernation and the latest status on the preparations for landing.

Fire effects on flaked stone, ground stone, and other stone artifacts [Chapter 4

Treesearch

Krista Deal

2012-01-01

Lithic artifacts can be divided into two broad classes, flaked stone and ground stone, that overlap depending on the defining criteria. For this discussion, flaked stone is used to describe objects that cut, scrape, pierce, saw, hack, etch, drill, or perforate, and the debris (debitage) created when these items are manufactured. Objects made of flaked stone include...

Novel ultrasound method to reposition kidney stones

PubMed Central

Shah, Anup; Owen, Neil R.; Lu, Wei; Cunitz, Bryan W.; Kaczkowski, Peter J.; Harper, Jonathan D.; Bailey, Michael R.; Crum, Lawrence A.

2011-01-01

The success of surgical management of lower pole stones is principally dependent on stone fragmentation and residual stone clearance. Choice of surgical method depends on stone size, yet all methods are subject to post-surgical complications resulting from residual stone fragments. Here we present a novel method and device to reposition kidney stones using ultrasound radiation force delivered by focused ultrasound and guided by ultrasound imaging. The device couples a commercial imaging array with a focused annular array transducer. Feasibility of repositioning stones was investigated by implanting artificial and human stones into a kidney-mimicking phantom that simulated a lower pole and collecting system. During experiment, stones were located by ultrasound imaging and repositioned by delivering short bursts of focused ultrasound. Stone motion was concurrently monitored by fluoroscopy, ultrasound imaging, and video photography, from which displacement and velocity were estimated. Stones were seen to move immediately after delivering focused ultrasound and successfully repositioned from the lower pole to the collecting system. Estimated velocities were on the order of 1 cm/s. This in vitro study demonstrates a promising modality to facilitate spontaneous clearance of kidney stones and increased clearance of residual stone fragments after surgical management. PMID:20967437

In silico and experimental evaluation of DNA-based detection methods for the ability to discriminate almond from other Prunus spp.

PubMed

Brežná, Barbara; Šmíd, Jiří; Costa, Joana; Radvanszky, Jan; Mafra, Isabel; Kuchta, Tomáš

2015-04-01

Ten published DNA-based analytical methods aiming at detecting material of almond (Prunus dulcis) were in silico evaluated for potential cross-reactivity with other stone fruits (Prunus spp.), including peach, apricot, plum, cherry, sour cherry and Sargent cherry. For most assays, the analysis of nucleotide databases suggested none or insufficient discrimination of at least some stone fruits. On the other hand, the assay targeting non-specific lipid transfer protein (Röder et al., 2011, Anal Chim Acta 685:74-83) was sufficiently discriminative, judging from nucleotide alignments. Empirical evaluation was performed for three of the published methods, one modification of a commercial kit (SureFood allergen almond) and one attempted novel method targeting thaumatin-like protein gene. Samples of leaves and kernels were used in the experiments. The empirical results were favourable for the method from Röder et al. (2011) and a modification of SureFood allergen almond kit, both showing cross-reactivity <10(-3) compared to the model almond. Copyright © 2014 Elsevier Ltd. All rights reserved.

Use of drug therapy in the management of symptomatic ureteric stones in hospitalised adults: a multicentre, placebo-controlled, randomised controlled trial and cost-effectiveness analysis of a calcium channel blocker (nifedipine) and an alpha-blocker (tamsulosin) (the SUSPEND trial).

PubMed

Pickard, Robert; Starr, Kathryn; MacLennan, Graeme; Kilonzo, Mary; Lam, Thomas; Thomas, Ruth; Burr, Jennifer; Norrie, John; McPherson, Gladys; McDonald, Alison; Shearer, Kirsty; Gillies, Katie; Anson, Kenneth; Boachie, Charles; N'Dow, James; Burgess, Neil; Clark, Terry; Cameron, Sarah; McClinton, Samuel

2015-08-01

Ureteric colic, the term used to describe the pain felt when a stone passes down the ureter from the kidney to the bladder, is a frequent reason for people to seek emergency health care. Treatment with the muscle-relaxant drugs tamsulosin hydrochloride (Petyme, TEVA UK Ltd) and nifedipine (Coracten(®), UCB Pharma Ltd) as medical expulsive therapy (MET) is increasingly being used to improve the likelihood of spontaneous stone passage and lessen the need for interventional procedures. However, there remains considerable uncertainty around the effectiveness of these drugs for routine use. To determine whether or not treatment with either tamsulosin 400 µg or nifedipine 30 mg for up to 4 weeks increases the rate of spontaneous stone passage for people with ureteric colic compared with placebo, and whether or not it is cost-effective for the UK NHS. A pragmatic, randomised controlled trial comparing two active drugs, tamsulosin and nifedipine, against placebo. Participants, clinicians and trial staff were blinded to treatment allocation. A cost-utility analysis was performed using data gathered during trial participation. Urology departments in 24 UK NHS hospitals. Adults aged between 18 and 65 years admitted as an emergency with a single ureteric stone measuring ≤ 10 mm, localised by computerised tomography, who were able to take trial medications and complete trial procedures. Eligible participants were randomised 1 : 1 : 1 to take tamsulosin 400 µg, nifedipine 30 mg or placebo once daily for up to 4 weeks to make the following comparisons: tamsulosin or nifedipine (MET) versus placebo and tamsulosin versus nifedipine. The primary effectiveness outcome was the proportion of participants who spontaneously passed their stone. This was defined as the lack of need for active intervention for ureteric stones at up to 4 weeks after randomisation. This was determined from 4- and 12-week case-report forms completed by research staff, and from the 4-week participant self-reported questionnaire. The primary economic outcome was the incremental cost per quality-adjusted life-year (QALY) gained over 12 weeks. We estimated costs from NHS sources and calculated QALYs from participant completion of the European Quality of Life-5 Dimensions health status questionnaire 3-level response (EQ-5D-3L™) at baseline, 4 weeks and 12 weeks. Primary outcome analysis included 97% of the 1167 participants randomised (378/391 tamsulosin, 379/387 nifedipine and 379/399 placebo participants). The proportion of participants who spontaneously passed their stone did not differ between MET and placebo [odds ratio (OR) 1.04, 95% confidence interval (CI) 0.77 to 1.43; absolute difference 0.8%, 95% CI -4.1% to 5.7%] or between tamsulosin and nifedipine [OR 1.06, 95% CI 0.74 to 1.53; absolute difference 1%, 95% CI -4.6% to 6.6%]. There was no evidence of a difference in QALYs gained or in cost between the trial groups, which means that the use of MET would be very unlikely to be considered cost-effective. These findings were unchanged by extensive sensitivity analyses around predictors of stone passage, including sex, stone size and stone location. Tamsulosin and nifedipine did not increase the likelihood of stone passage over 4 weeks for people with ureteric colic, and use of these drugs is very unlikely to be cost-effective for the NHS. Further work is required to investigate the phenomenon of large, high-quality trials showing smaller effect size than meta-analysis of several small, lower-quality studies. Current Controlled Trials ISRCTN69423238. European Clinical Trials Database (EudraCT) number 2010-019469-26. This project was funded by the National Institute for Health Research Health Technology Assessment programme and will be published in full in Health Technology Assessment; Vol. 19, No. 63. See the NIHR Journals Library website for further project information.

CDPP activities: Promoting research and education in space physics

NASA Astrophysics Data System (ADS)

Genot, V. N.; Andre, N.; Cecconi, B.; Gangloff, M.; Bouchemit, M.; Dufourg, N.; Pitout, F.; Budnik, E.; Lavraud, B.; Rouillard, A. P.; Heulet, D.; Bellucci, A.; Durand, J.; Delmas, D.; Alexandrova, O.; Briand, C.; Biegun, A.

2015-12-01

The French Plasma Physics Data Centre (CDPP, http://cdpp.eu/) addresses for more than 15 years all issues pertaining to natural plasma data distribution and valorization. Initially established by CNES and CNRS on the ground of a solid data archive, CDPP activities diversified with the advent of broader networks and interoperability standards, and through fruitful collaborations (e.g. with NASA/PDS): providing access to remote data, designing and building science driven analysis tools then became at the forefront of CDPP developments. For instance today AMDA helps scientists all over the world accessing and analyzing data from ancient to very recent missions (from Voyager, Galileo, Geotail, ... to Maven, Rosetta, MMS, ...) as well as results from models and numerical simulations. Other tools like the Propagation Tool or 3DView allow users to put their data in context and interconnect with other databases (CDAWeb, MEDOC) and tools (Topcat). This presentation will briefly review this evolution, show technical and science use cases, and finally put CDPP activities in the perspective of ongoing collaborative projects (Europlanet H2020, HELCATS, ...) and future missions (Bepicolombo, Solar Orbiter, ...).

Two-stage vs single-stage management for concomitant gallstones and common bile duct stones

PubMed Central

Lu, Jiong; Cheng, Yao; Xiong, Xian-Ze; Lin, Yi-Xin; Wu, Si-Jia; Cheng, Nan-Sheng

2012-01-01

AIM: To evaluate the safety and effectiveness of two-stage vs single-stage management for concomitant gallstones and common bile duct stones. METHODS: Four databases, including PubMed, Embase, the Cochrane Central Register of Controlled Trials and the Science Citation Index up to September 2011, were searched to identify all randomized controlled trials (RCTs). Data were extracted from the studies by two independent reviewers. The primary outcomes were stone clearance from the common bile duct, postoperative morbidity and mortality. The secondary outcomes were conversion to other procedures, number of procedures per patient, length of hospital stay, total operative time, hospitalization charges, patient acceptance and quality of life scores. RESULTS: Seven eligible RCTs [five trials (n = 621) comparing preoperative endoscopic retrograde cholangiopancreatography (ERCP)/endoscopic sphincterotomy (EST) + laparoscopic cholecystectomy (LC) with LC + laparoscopic common bile duct exploration (LCBDE); two trials (n = 166) comparing postoperative ERCP/EST + LC with LC + LCBDE], composed of 787 patients in total, were included in the final analysis. The meta-analysis detected no statistically significant difference between the two groups in stone clearance from the common bile duct [risk ratios (RR) = -0.10, 95% confidence intervals (CI): -0.24 to 0.04, P = 0.17], postoperative morbidity (RR = 0.79, 95% CI: 0.58 to 1.10, P = 0.16), mortality (RR = 2.19, 95% CI: 0.33 to 14.67, P = 0.42), conversion to other procedures (RR = 1.21, 95% CI: 0.54 to 2.70, P = 0.39), length of hospital stay (MD = 0.99, 95% CI: -1.59 to 3.57, P = 0.45), total operative time (MD = 12.14, 95% CI: -1.83 to 26.10, P = 0.09). Two-stage (LC + ERCP/EST) management clearly required more procedures per patient than single-stage (LC + LCBDE) management. CONCLUSION: Single-stage management is equivalent to two-stage management but requires fewer procedures. However, patient’s condition, operator’s expertise and local resources should be taken into account in making treatment decisions. PMID:22791952

[Factors affecting residual stones after percutaneous nephrolithotomy in patients with renal calculus].

PubMed

Qiao, Mingzhou; Zhang, Haifang; Zhou, Chenlong

2015-11-24

To explore the factors affecting the residual stones after percutaneous nephrolithotomy (PCNL) in patients with renal calculus. A retrospective analysis was performed for 1 200 patients who were affected by renal calculus and treated with PCNL between Jan 2008 and May 2014 in People's Hospital of Anyang City. Among those patients, 16 were diagnosed as bilateral renal stone and had two successive operations. The size, location and number of stones, previous history of surgery, the degree of hydronephrosis, urinary infection were included in the univariate analysis. Significant factors in univariate analysis were included in the multivariate analysis to determine factors affecting stone residual. A total of 385 cases developed stone residual after surgery. The overall residual rate was 31.7%. In univariate analysis, renal pelvis combined with caliceal calculus (P=0.006), stone size larger than 4 cm (P=0.005), stone number more than 4 (P=0.002), the amount of bleeding more than 200 ml (P=0.025), operation time longer than 120 minutes (P=0.028) were associated with an increased rate of stone residual. When subjected to the Cox multivariate analysis, the independent risk factors for residual stones were renal pelvis combined with caliceal calculus (P=0.049), stone size larger than 4 cm (P=0.038) and stone number more than 4 (P=0.018). Factors affecting the incidence of residual stones after PCNL are the size, location and number of stones. Larger size stone and the presence of renal pelvis combined with caliceal calculus are significantly associated with residual stones. Nevertheless, stone number less than 4 indicates an increased stone clearance rate.

Significance of lower-pole pelvicaliceal anatomy on stone clearance after shockwave lithotripsy in nonobstructive isolated renal pelvic stones.

PubMed

Sozen, Sinan; Kupeli, Bora; Acar, Cenk; Gurocak, Serhat; Karaoglan, Ustunol; Bozkirli, Ibrahim

2008-05-01

To investigate the probable effect of lower-pole pelvicaliceal anatomy on stone clearance after shockwave lithotripsy (SWL) in patients with nonobstructive renal pelvic stones. The clinical records of patients with isolated renal pelvic stones who underwent SWL between 1996 and 2005 were reviewed. After excluding patients with obstruction leading to dilatation, major anatomic abnormalities, noncalcium stones, metabolic abnormalities, history of recurrent stone disease, multiple stones, and previous renal surgery, 153 patients were enrolled in the study. Lower pole infundibulopelvic angle (IPA) and infundibular length and width were measured from intravenous urography. Patients were classified into three groups according to stone burden (group 1, <100 mm(2); group 2, 101-200 mm(2); group 3, 201-400 mm(2)). The mean stone size was 142.08+/-86.3 mm(2). Overall stone-free rate was 53.6%. Localization of clinically significant or insignificant residual fragments was in the lower calix, renal pelvis, and both in 50 (32.6%), 29 (18.9%), and 8 (5.2%) patients, respectively. There was no statistically significant difference in pelvicaliceal anatomic features except narrower IPA (P=0.02) in group 1 patients with residual stones. The falling of stone fragments to the lower calix in spite of the ureter whether clinically significant or not after SWL of pelvic stones initially seems to be related to stone burden rather than lower caliceal anatomy. However, existence of a more narrow IPA in group 1 patients with residual fragments led us to believe that lower-pole IPA can play a role in stone clearance, especially for smaller stones, probably because of smaller residual fragment size or the more mobile nature of the primary stone.

In Idiopathic Calcium Oxalate Stone Formers, Unattached Stones Show Evidence of Having Originated as Attached Stones on Randall’s Plaque

PubMed Central

Miller, Nicole L.; Williams, James C.; Evan, Andrew P.; Bledsoe, Sharon B.; Coe, Fredric L.; Worcester, Elaine M.; Munch, Larry C.; Handa, Shelly E.; Lingeman, James E.

2009-01-01

Objective To analyze the structure and composition of unattached stones in idiopathic calcium oxalate stone formers (ICSF) and compare them to attached stones from the same cohort in order to investigate whether more than one pathogenic mechanism exists for stone formation in ICSF. Patients and methods ICSF undergoing percutaneous nephrolithotomy or ureteroscopy for treatment of nephrolithiasis were consented for this study. All accessible renal papillae were endoscopically imaged using a digital endoscope. All stones were removed and determined by the operating surgeon to be attached or unattached to the underlying papilla. Micro-computed tomography (micro-CT), which provides three-dimensional analysis of entire stones, was used to compare the structure and composition of attached versus unattached stones. Results Of 115 stones collected from 9 patients (12 renal units), only 25 stones were found not to be attached to renal papillae. Of these 25 stones, 4 were lost and 12 showed definite morphological evidence of having been attached to tissue, probably having been knocked off of papillae during access. For the remaining 9 stones, micro-CT analysis revealed at least one internal region of calcium phosphate within each of these unattached calcium oxalate (CaOx) stones. That is, the internal structure of the unattached stones is consistent with their having originated attached to RP, and then having become detached but retained in the kidney, with new layers of CaOx eventually covering the original attachment site. Conclusions Micro CT analysis supports the hypothesis that in ICSF, both attached and unattached stones occur as a result of a common pathogenic mechanism. That is, in this type of stone former, CaOx stones—even those not showing morphology that betrays attachment—all originate attached to interstitial plaque on the renal papilla. PMID:19549258

Combined Burst Wave Lithotripsy and Ultrasonic Propulsion for Improved Urinary Stone Fragmentation.

PubMed

Zwaschka, Theresa A; Ahn, Justin S; Cunitz, Bryan W; Bailey, Michael R; Dunmire, Barbrina; Sorensen, Mathew D; Harper, Jonathan D; Maxwell, Adam D

2018-04-01

Burst wave lithotripsy (BWL) is a new technology in development to fragment urinary stones. Ultrasonic propulsion (UP) is a separate technology under investigation for displacing stones. We measure the effect of propulsion pulses on stone fragmentation from BWL. Two artificial stone models (crystalline calcite, BegoStone plaster) and human calcium oxalate monohydrate (COM) stones measuring 5 to 8 mm were subjected to ultrasound exposures in a polyvinyl chloride tissue phantom within a water bath. Stones were exposed to BWL with and without propulsion pulses interleaved for set time intervals depending on stone type. Fragmentation was measured as a fraction of the initial stone mass fragmented to pieces smaller than 2 mm. BegoStone model comminution improved from 6% to 35% (p < 0.001) between BWL and BWL with interleaved propulsion in a 10-minute exposure. Propulsion alone did not fragment stones, whereas addition of propulsion after BWL slightly improved BegoStone model comminution from 6% to 11% (p < 0.001). BegoStone model fragmentation increased with rate of propulsion pulses. Calcite stone fragmentation improved from 24% to 39% in 5 minutes (p = 0.047) and COM stones improved from 17% to 36% (p = 0.01) with interleaved propulsion. BWL with UP improved stone fragmentation compared with BWL alone in vitro. The improvement was greatest when propulsion pulses are interleaved with BWL treatment and when propulsion pulses are applied at a higher rate. Thus, UP may be a useful adjunct to enhance fragmentation in lithotripsy in vivo.

Black and brown pigment gallstones differ in microstructure and microcomposition.

PubMed

Malet, P F; Takabayashi, A; Trotman, B W; Soloway, R D; Weston, N E

1984-01-01

The two subtypes of pigment gallstones, black and brown stones, differ in chemical composition and pathogenesis. We examined a black bilirubinate stone and a black phosphate stone (which represented opposite ends of the compositional spectrum of black noncarbonate stones), a black carbonate stone, and a brown pigment stone using scanning electron microscopy and microchemical techniques to determine if stone microstructure and microcomposition reflected different patterns of formation. The cross-sectional surfaces of the black bilirubinate and black phosphate stones were smooth and homogenous. Electron probe microanalysis demonstrated high concentrations of sulfur and copper in the center of the black bilirubinate stone; sulfur was in a low valence state consistent with disulfide linkages in proteins. The brown stone was rough-surfaced with lamellated bands on cross-section. The lighter-colored bands in this stone contained virtually all of the detected calcium palmitate, while the darker sections contained much more calcium bilirubinate. Plasma oxygen etching demonstrated a network of protein interdigitating with calcium bilirubinate salts in the black bilirubinate and black phosphate stones but not in the black carbonate or brown stones. Argon ion etching demonstrated that calcium bilirubinate was in a closely packed rod-shaped arrangement in all three black stones but not in the brown stone. We conclude that the marked differences in structure and composition between the black noncarbonate and brown pigment gallstones support the hypothesis that the two major pigment gallstone types form by different mechanisms. In addition, the layered structures of the black carbonate and brown stones suggest that stone growth is affected by cyclic changes in biliary composition.

Is retrograde intrarenal surgery the game changer in the management of upper tract calculi? A single-center single-surgeon experience of 131 cases.

PubMed

Parikh, Kandarp Priyakant; Jain, Ravi Jineshkumar; Kandarp, Aditya Parikh

2018-01-01

Success of any modality for stone disease needs to be evaluated in terms of Stone Free Rates (SFR), auxiliary procedures needed; complications and follow up. SFR in RIRS is subject to parameters like stone burden, location, number, hardness, composition; calyceal and ureter anatomy; use of ureteric access sheath (UAS); surgeon experience etc. The aim of this study is to evaluate the efficacy and safety of RIRS for managing upper tract stones. The objectives include evaluating SFR in RIRS in relation to stone burden, location and number. Other objectives include evaluating SFR after re RIRS in relation to stone burden, necessity of pre DJ stenting, use of UAS and post operative complication rate. 131 patients operated by single surgeon for single/multiple renal and/or upper ureteric stones were evaluated. Stone size > 3 mm on follow up CT KUB was considered as residual. Re RIRS was required for residual stones. The overall SFR was 76%. SFR were statistically lower with stone burden > 1.5 cm, lower calyceal stones and single stones with stone burden > 1.5 cm. SFR was 90% after 2 nd RIRS and 98.5% after 3 rd RIRS procedure. No significant difference in SFR was noted between single v/s multiple stones, single calyx v/s multiple calyx stones and renal v/s upper ureteric stones. No major complication was noted. Larger stone burden and lower calyceal location are important factors deciding SFR in RIRS. With auxiliary procedure, RIRS is safe and effective compared to PCNL.

Histopathology Predicts the Mechanism of Stone Formation

NASA Astrophysics Data System (ADS)

Evan, Andrew P.

2007-04-01

About 5% of American women and 12% of men will develop a kidney stone at some time in their life and these numbers appear to be on the rise. Despite years of scientific research into the mechanisms of stone formation and growth, limited advances have been made until recently. Randall's original observations and thoughts on the mechanisms for kidney stone formation have been validated for idiopathic calcium oxalate stone formers (ICSF) but not for most other stone forming groups. Our current studies on selected groups of human stone formers using intraoperative papillary biopsies has shown overwhelming evidence for the presence of Randall's plaque in ICSF and that stone formation and growth are exclusively linked to its availability to urinary ions and proteins. Intense investigation of the plaque-stone junction is needed if we are to understand the factors leading to the overgrowth process on exposed regions of plaque. Such information should allow the development of treatment strategies to block stone formation in ICSF patients. Patients who form brushite stones, or who form apatite stones because of distal renal tubular acidosis (dRTA), or patients with calcium oxalate stones due to obesity bypass procedures, or patients with cystinuria, get plugged inner medullary collecting ducts (IMCD) which leads to total destruction of the lining cells and focal sites of interstitial fibrosis. These stone formers have plaque but at levels equal to or below non-stone formers, which would suggest that they form stones by a different mechanism than do ICSF patients.

Open stone surgery: a still-in-use approach for complex stone burden.

PubMed

Çakici, Özer Ural; Ener, Kemal; Keske, Murat; Altinova, Serkan; Canda, Abdullah Erdem; Aldemir, Mustafa; Ardicoglu, Arslan

2017-06-30

Urinary stone disease is a major urological condition. Endourologic techniques have influenced the clinical approach and outcomes. Open surgery holds a historic importance in the management of most conditions. However, complex kidney stone burden may be amenable to successful results with open stone surgery. In this article, we report our eighteen cases of complex urinary stone disease who underwent open stone removal. A total of 1701 patients have undergone surgical treatment for urinary stone disease in our clinic between July 2012 and July 2016, comprising eighteen patients who underwent open stone surgery. Patients' demographic data, stone analysis results, postoperative clinical data, and stone status were evaluated retrospectively. The choice of surgical approach is mostly dependent on the surgeon's preference. In two patients, open surgery was undertaken because of perioperative complications. We did not observe any Clavien-Dindo grade 4 or 5 complications. Three patients were managed with a course of antibiotics due to postoperative fever. One patient had postoperative pleurisy, one patient had urinoma, and two patients had postoperative ileus. Mean operation time was 84 (57-124) minutes and mean hospitalization time was 5.5 (3-8) days. Stone-free status was achieved in 15 patients (83.3%). Endourologic approaches are the first options for treatment of urinary stone disease. However, open stone surgery holds its indispensable position in complicated cases and in complex stone burden. Open stone surgery is also a valid alternative to endourologic techniques in all situations.

[Infrared spectrophotometry for crystalline composition of staghorn calculi].

PubMed

Ma, Kai; Huang, Xiao-bo; Xu, Qing-quan; Li, Jian-xing; Xiong, Liu-lin; Yang, Bo; Ye, Xiong-jun; Chen, Liang; Wang, Xiao-feng; Na, Yan-qun

2010-11-30

To provide theoretic rationales for treatment and prevention of staghorn calculi by analyzing stone composition and studying the relationship between stone and urinary tract infections. The clinical data of 51 staghorn calculi patients were analyzed retrospectively. The stone compositions were studied by infrared spectrophotometry. Six types of stone compositions were obtained. There were calcium oxalate monohydrate, calcium oxalate dehydrate, carbonate apatite, magnesium ammonium phosphate hexahydrate, uric acid and L-cystine. The majority of stones were of mixed compositions, pure stones were found in 15 cases (29.4%). Among all stones, calcium oxalate stones were found in 41 cases (80.4%) and uric stones in 10 cases (19.6%). Infectious stones were found in 26 cases (51.0%). Urinary tract infections were found in 40 (78.4%) patients and positive urine/stone culture was detected in 33 (64.7%) patients. With multiple crystalline compositions and etiological factors, the staghorn calculi are closely correlated with urinary tract infections.

Salivary stones: symptoms, aetiology, biochemical composition and treatment.

PubMed

Kraaij, S; Karagozoglu, K H; Forouzanfar, T; Veerman, E C I; Brand, H S

2014-12-05

Salivary stones, also known as sialoliths, are calcified concrements in the salivary glands. Sialoliths are more frequently located in the submandibular gland (84%), than in the parotid gland (13%). The majority of the submandibular stones are located in Wharton's duct (90%), whereas parotid stones are more often located in the gland itself. Salivary stones consist of an amorphous mineralised nucleus, surrounded by concentric laminated layers of organic and inorganic substances. The organic components of salivary stones include collagen, glycoproteins, amino acids and carbohydrates. The major inorganic components are hydroxyapatite, carbonate apatite, whitlockite and brushite. The management of salivary stones is focused on removing the salivary stones and preservation of salivary gland function which depends on the size and location of the stone. Conservative management of salivary stones consists of salivary gland massage and the use of sialogogues. Other therapeutic options include removal of the stone or in some cases surgical removal of the whole salivary gland.

Single-session ureteroscopic pneumatic lithotripsy for the management of bilateral ureteric stones.

PubMed

Isen, Kenan

2012-01-01

In nowadays there is no consensus on single-session ureteroscopic lithotripsy (URSL) for the management of bilateral ureteric stones. The aim of this study was to evaluate efficacy and safety of single-session URSL in patients with bilateral ureteric stones. 41 patients who have undergone bilateral single-session URSL were evaluted in this study. A 8/9.8 Fr Wolf semi-rigid ureteroscope was used for the procedures, and the stones were fragmented with pneumatic lithotripter. A high stone-free rate was achieved (90.2%) after single endoscopic procedure with a retreatment rate of 9.8%. The procedure was most successful for distal ureteric stones with a 96.2% stone-free rate followed by middle ureteric stones with a 81.8% stone-free rate while the least success was achieved for proximal ureteric stones with a 77.7% stone-free rate (p < 0.05). A greater stone-free rate was obtained in those with stones less than 10 mm (93.7%) than in those with stones larger than 10 mm (77.7%) (p < 0.05). Ureteral perforation occurred in only one patient (2.4%). No long-term complication was observed in any patient. Bilateral single-session URSL can be performed effectively and safely with a low complication rate in patients with bilateral ureteric stones. It can reduce the need of anaesthetics and hospital stay.

Using Helical CT to Predict Stone Fragility in Shock Wave Lithotripsy (SWL)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Williams, James C. Jr.; Zarse, Chad A.; Jackson, Molly E.

2007-04-05

Great variability exists in the response of urinary stones to SWL, and this is true even for stones composed of the same mineral. Efforts have been made to predict stone fragility to shock waves using computed tomography (CT) patient images, but most work to date has focused on the use of stone CT number (i.e., Hounsfield units). This is an easy number to measure on a patient stone, but its value depends on a number of factors, including the relationship of the size of the stone to me resolution (i.e., the slicewidth) of the CT scan. Studies that have shownmore » a relationship between stone CT number and failure in SWL are reviewed, and all are shown to suffer from error due to stone size, which was not accounted for in the use of Hounsfield unit values. Preliminary data are then presented for a study of calcium oxalate monohydrate (COM) stones, in which stone structure-rather than simple CT number values-is shown to correlate with fragility to shock waves. COM stones that were observed to have structure by micro CT (e.g., voids, apatite regions, unusual shapes) broke to completion in about half the number of shock waves required for COM stones that were observed to be homogeneous in structure by CT. This result suggests another direction for the use of CT in predicting success of SWL: the use of CT to view stone structure, rather than simply measuring stone CT number. Viewing stone structure by CT requires the use of different viewing windows than those typically used for examining patient scans, but much research to date indicates that stone structure can be observed in the clinical setting. Future clinical studies will need to be done to verify the relationship between stone structure observed by CT and stone fragility in SWL.« less

Characteristics of renal papillae in kidney stone formers.

PubMed

Marien, Tracy P; Miller, Nicole L

2016-12-01

The mechanism of kidney stone formation is not well understood. In order to better understand the pathophysiology for specific kidney stone compositions and systemic diseases associated with kidney stones, endoscopic papillary mapping studies with concurrent biopsies have been conducted. This review will summarize the findings of these studies and proposed mechanisms for thirteen disease processes associated with kidney stones. A review of the literature was performed identifying thirteen studies that endoscopically mapped and biopsied renal papillae of different stone formers. These studies characterized renal papillae based on amount of Randall's plaque, Bellini's duct pathology, papillary contour changes, presence of attached stones, pitting, and frequently papillary and cortical biopsies. The groups studied and reviewed here are kidney stone formers who have a history of idiopathic calcium oxalate stone formation, cystinuria, brushite stones, gastric bypass, ileostomy, small bowel resection, primary hyperparathyroidism, distal renal tubular acidosis (dRTA), primary hyperoxaluria, idiopathic calcium phosphate stone formation, medullary sponge kidney (MSK), uric acid stones, and struvite stones. A proposed standardized scoring system for papillary pathology was also reviewed. The series showed various degrees and types of changes to the renal papillae and corresponding histopathologic changes for each type of stone former reviewed. Those with predominantly alone Randall's plaque pathology had less tissue damage versus those with extensive Bellini's duct lesions who had more interstitial fibrosis and cortical pathology. Randall's plaques are associated with stone formers who have low urinary volume, high urinary calcium, and acidic urine and thus are frequently seen in those with brushite stones, primary hyperparathyroidism, small bowel resection, and idiopathic calcium phosphate stone formers. Bellini's duct plugging and pathology is theorized to occur via free solution crystallization, ductal obstruction, inflammation, cellular injury, fibrosis, and acidification defects. Ureteroscopic manifestations of stone disease can vary from normal appearing papillae to significantly diseased appearing papillae. Some diseases have very characteristic papillary changes. Further studies are necessary to fully elucidate the mechanisms of stone formation in patients with nephrolithiasis.

Advances in lithotripsy and stone disease treatment.

PubMed

Newman, J

1996-01-01

Stone disease can be traced back as far as the human record. This article traces the diagnosis and treatment of stone disease from primitive attempts at stone removal in ancient civilizations to the advent of extracorporeal shock wave lithotripsy (ESWL) in the 1970s. ESWL revolutionized the treatment of stone disease, offering patients a less painful alternative to the traditional surgical removal of stones. This article discusses recent advances in ESWL, describes the radiologic technologist's role in diagnosing and managing stone disease, and outlines future prospects in the treatment of stone disease.

Infection (urease) stones.

PubMed

Griffith, D P; Osborne, C A

1987-01-01

Infection-induced stones in man probably form solely as a consequence of urealysis which is catalyzed by the bacterial protein urease. Urease stones composed of struvite and carbonate-apatite may form primarily, or as secondary stones or pre-existent metabolic stones. Struvite stones form and grow rapidly owing to (a) supersaturation of urine with stone forming salts, (b) 'salting out' of poorly soluble organic substances normally dissolved in urine and (c) ammonia-induced destruction of the normally protective urothelial glycosaminoglycan layer. Immature (predominantly organic) matrix stones mature into densely mineralized stones. Curative treatment is possible only by eliminating all of the stone and by eradicating all urinary and parenchymal infection. A variety of operative and pharmaceutical approaches are available. Patient treatment must be individualized inasmuch as some patients are better candidates for one type of treatment than another.

Wedge filter imaging spectrometer

NASA Astrophysics Data System (ADS)

Bernardi, Pernelle; Bonafous, M.; Motisi, M.; Reess, J.-M.; Tanrin, J.; Laubier, D.

2017-11-01

LESIA (Laboratoire d'Etudes Spatiales et d'Instrumentation en Astrophysique, Observatoire de Paris-Meudon) has an extensive experience in visible and infrared imaging spectrometry with several instruments onboard planetary space missions (MarsExpress/OMEGA, VenusExpress/VIRTIS, Rosetta/VIRTIS).

Risk factors for recurrent symptomatic pigmented biliary stones after percutaneous transhepatic biliary extraction.

PubMed

Kim, Dong Won; Lee, Sang Yun; Cho, Jin-Han; Kang, Myong Jin; Noh, Myung Hwan; Park, Byeong-Ho

2010-07-01

To evaluate risk factors for the recurrence of biliary stones after a percutaneous transhepatic biliary stone extraction. The procedures were performed on 339 patients between July 2004 and December 2008 (54 months). Medical records and images were retrospectively reviewed for 135 patients (mean age, 66.4 years; 83 men and 52 women) who had undergone follow-up for a mean of 13.2 months (range, 3-37 months). To evaluate risk factors for the recurrence of biliary stones, variables were evaluated with univariate and multivariate analyses. Variables included sex, age, stone location, number of stones, stone size, presence of a peripapillary diverticulum, application of antegrade sphincteroplasty, presence of a biliary stricture, largest biliary diameter before the procedure, and gallbladder status. Thirty-three of the 135 patients (24%) had recurrent symptomatic biliary stones and underwent an additional extraction. The mean time to recurrence was 17.2 months +/- 8.7. Univariate analysis of risk factors for recurrence of biliary stones demonstrated that location, number of stones, stone size, application of antegrade sphincteroplasty, presence of a biliary stricture, and biliary diameter were significant factors (P < .05). With use of multivariate analysis, the number of stones (> or =6; relative risk, 64.8; 95% confidence interval: 5.8, 717.6) and stone size (> or =14 mm; relative risk, 3.8; 95% confidence interval: 1.138, 13.231) were determined to be significant risk factors. The independent risk factors for recurrence of symptomatic biliary stones after percutaneous transhepatic biliary stone extraction were a stone size of at least 14 mm and the presence of at least six stones. Copyright 2010 SIR. Published by Elsevier Inc. All rights reserved.

Stone clearance after extracorporeal shockwave lithotripsy in patients with solitary pure calcium oxalate stones smaller than 1.0 cm in the proximal ureter, with special reference to monohydrate and dihydrate content.

PubMed

Ichiyanagi, Osamu; Nagaoka, Akira; Izumi, Takuji; Kawamura, Yuko; Tsukigi, Masaaki; Ishii, Tatsuya; Ohji, Hiroshi; Kato, Tomoyuki; Tomita, Yoshihiko

2013-04-01

The aim of this study was to assess stone-free rates following extracorporeal shockwave lithotripsy (ESWL) of pure calcium oxalate (CaOx) stones in the proximal ureter. The investigators retrospectively examined 53 patients with 5-10 mm pure CaOx stones in the proximal ureter from the medical archives of 593 consecutive patients treated with ESWL. The compositions of calcium oxalate monohydrate (COM) and dihydrate (COD) in a given stone were determined by infrared spectrometry. Stone size, attenuation number and stone-to-skin distance (SSD) were measured using plain radiography and computed tomography (CT). ESWL success was evaluated by stone-free status after the first single session. On average, calculi were 8.0 × 5.3 mm in size, with an SSD of 11.0 cm. The mean CT attenuation value was 740.1 HU. Attenuation numbers correlated significantly with stone diameter (r = 0.49), but had no correlation with the stone content of COM or COD. A negative correlation was observed between COM and COD content (r = -0.925). With regard to patients' physical characteristics and COM and COD content, no differences were found between study subgroups with stone-free and residual status (n = 38 and 15, respectively). There were also no differences in clinical features between patient subgroups with COM- or COD-predominant stones (n = 22 and 31, respectively). The findings indicated that the differences in COM and COD content of CaOx stones had no impact on stone clearance after ESWL and that a favorable stone-free rate of the stones treated with ESWL may be achieved independently of CaOx hydration.

Combined retrograde flexible ureteroscopic lithotripsy with holmium YAG laser for renal calculi associated with ipsilateral ureteral stones.

PubMed

Cocuzza, Marcello; Colombo, Jose R; Ganpule, Arvind; Turna, Burak; Cocuzza, Antonio; Dhawan, Divyar; Santos, Bruno; Mazzucchi, Eduardo; Srougi, Miguel; Desai, Mahesh; Desai, Mihir

2009-02-01

The purpose of this study was to evaluate the effectiveness of combined ureteroscopic holmium YAG lithotripsy for renal calculi associated with ipsilateral ureteral stones. Between August 2002 and March 2007, retrograde flexible ureteroscopic stone treatment was attempted in 351 cases. Indication for treatment was concurrent symptomatic ureteral stones in 63 patients (group I). Additional operative time and perioperative complication rates were compared to a group of 39 patients submitted to ureteroscopic treatment for ureteral calculi exclusively (group II). Mean ureteral stone size was 8.0 +/- 2.6 mm and 8.1 +/- 3.4 mm for groups I and II, respectively. Mean operative time for group I was 67.9 +/- 29.5 minutes and for group 2 was 49.3 +/- 13.2 minutes (p < 0.001). Flexible ureteroscopic therapy for renal calculi increased 18 minutes in the mean operative time. The overall complication rate was 3.1% and 2.5% for groups I and II, respectively (p = 0.87). Mean renal stone size was 10.7 +/- 6.4 mm, overall stone free rate in group I was 81%. However, considering only patients with renal stones smaller than 15 mm, the stone free rate was 88%. Successful treatment occurred in 81% of patients presenting lower pole stones, but only 76% of patients with multiple renal stones became stone free. As expected, stone free rate showed a significant negative correlation with renal stone size (p = 0.03; r = -0.36). Logistic regression model indicated an independent association of renal stones smaller than 15 mm and stone free rate (OR = 13.5; p = 0.01). Combined ureteroscopic treatment for ureteral and ipsilateral renal calculi is a safe and attractive option for patients presenting for symptomatic ureteral stone and ipsilateral renal calculi smaller than 15 mm.

Stone-Mode Ultrasound for Determining Renal Stone Size.

PubMed

May, Philip C; Haider, Yasser; Dunmire, Barbrina; Cunitz, Bryan W; Thiel, Jeff; Liu, Ziyue; Bruce, Matthew; Bailey, Michael R; Sorensen, Mathew D; Harper, Jonathan D

2016-09-01

The purpose of this study was to measure the accuracy of stone-specific algorithms (S-mode) and the posterior acoustic shadow for determining kidney stone size with ultrasound (US) in vivo. Thirty-four subjects with 115 renal stones were prospectively recruited and scanned with S-mode on a research US system. S-mode is gray-scale US adjusted to enhanced stone contrast and resolution by minimizing compression and averaging, and increasing line density and frequency. Stone and shadow width were compared with a recent CT scan and, in 5 subjects with 18 stones, S-mode was compared with a clinical US system. Overall, 84% of stones identified on CT were detected on S-mode and 66% of these shadowed. Seventy-three percent of the stone measurements and 85% of the shadow measurements were within 2 mm of the size on CT. A posterior acoustic shadow was present in 89% of stones over 5 mm versus 53% of stones under 5 mm. S-mode visualized 78% of stones, versus 61% for the clinical system. S-mode stone and shadow measurements differed from CT by 1.6 ± 1.0 mm and 0.8 ± 0.6 mm, respectively, compared with 2.0 ± 1.5 mm and 1.6 ± 1.0 mm for the clinical system. S-mode offers improved visualization and sizing of renal stones. With S-mode, sizing of the stone itself and the posterior acoustic shadow were similarly accurate. Stones that do not shadow are most likely <5 mm and small enough to pass spontaneously.

Natural history of asymptomatic renal stones and prediction of stone related events.

PubMed

Kang, Ho Won; Lee, Sang Keun; Kim, Won Tae; Kim, Yong-June; Yun, Seok-Joong; Lee, Sang-Cheol; Kim, Wun-Jae

2013-05-01

The appropriate management for asymptomatic renal stones remains unclear. We assessed the natural history and progression rate of such stones and identified clinical factors associated with an increased risk of stone related events. We retrospectively reviewed the medical records of 201 male and 146 female patients with asymptomatic renal stones. It was recommended that patients be followed every 6 months. Mean followup was 31 months (range 6 to 180). Patients were divided into 2 groups by stone related events, including spontaneous stone passage, flank pain, stone growth or the need for intervention during followup. Spontaneous passage occurred in 101 patients (29.1%). Of the patients 186 (53.6%) and 161 (46.4%) did and did not have stone related events, respectively. Of the whole cohort 85 patients (24.5%) required intervention but only 4.6% needed surgery. At 19 months after diagnosis 50% of the patients had a symptom. Those with stone related events were more likely to be younger (mean ± SD age 46.6 ± 12.7 vs 49.3 ± 12.6 years) and male, and have a stone history (p = 0.047, 0.017 and 0.014, respectively). Male gender significantly decreased the probability of freedom from stone related events (log rank test p = 0.0135) and it was an independent predictor of stone related events (HR 1.521, p = 0.009). Younger patients, and those with smaller stones and no stone growth were more likely to experience spontaneous passage and less likely to undergo intervention (each p <0.05). Asymptomatic renal stones can be followed safely but long-term followup is necessary. Periodic followup and early intervention should be recommended in patients with risk factors. Copyright © 2013 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Shock wave lithotripsy outcomes for lower pole and non-lower pole stones from a university teaching hospital: Parallel group comparison during the same time period

PubMed Central

Geraghty, Robert; Burr, Jacob; Simmonds, Nick; Somani, Bhaskar K.

2015-01-01

Introduction: Shock wave lithotripsy (SWL) is a treatment option for all locations of renal and ureteric stones. We compared the results of SWL for lower pole renal stones with all other non-lower pole renal and ureteric stones during the same time period. Material and Methods: All SWL procedures were carried out as day case procedures by a mobile lithotripter from January 2012 to August 2013. The follow-up imaging was a combination of KUB X-ray or USS. Following SWL treatment, the stone free rate (SFR) was defined as ≤3 mm fragments. Results: A total of 148 patients with a mean age of 62 years underwent 201 procedures. Of the 201 procedures, 93 (46%) were for lower pole stones. The non-lower pole stones included upper pole (n = 36), mid pole (n = 40), renal pelvis (n = 10), PUJ (n = 8), mid ureter (n = 3), upper ureter (n = 5) and a combination of upper, middle and/or lower pole (n = 6). The mean stone size for lower pole stones (7.4 mm; range: 4-16 mm) was slightly smaller than non-lower pole stones (8 mm; range: 4-17 mm). The stone fragmentation was successful in 124 (62%) of patients. However, the SFR was statistically significantly better (P = 0.023) for non-lower pole stones 43 (40%) compared to lower pole stones 23 (25%). There were 9 (4%) minor complications and this was not significantly different in the two groups. Conclusions: Although SWL achieves a moderately high stone fragmentation rate with a low complication rate, the SFR is variable depending on the location of stone and the definition of SFR, with lower pole stones fairing significantly worse than stones in all other locations. PMID:25657543

Shock wave lithotripsy outcomes for lower pole and non-lower pole stones from a university teaching hospital: Parallel group comparison during the same time period.

PubMed

Geraghty, Robert; Burr, Jacob; Simmonds, Nick; Somani, Bhaskar K

2015-01-01

Shock wave lithotripsy (SWL) is a treatment option for all locations of renal and ureteric stones. We compared the results of SWL for lower pole renal stones with all other non-lower pole renal and ureteric stones during the same time period. All SWL procedures were carried out as day case procedures by a mobile lithotripter from January 2012 to August 2013. The follow-up imaging was a combination of KUB X-ray or USS. Following SWL treatment, the stone free rate (SFR) was defined as ≤3 mm fragments. A total of 148 patients with a mean age of 62 years underwent 201 procedures. Of the 201 procedures, 93 (46%) were for lower pole stones. The non-lower pole stones included upper pole (n = 36), mid pole (n = 40), renal pelvis (n = 10), PUJ (n = 8), mid ureter (n = 3), upper ureter (n = 5) and a combination of upper, middle and/or lower pole (n = 6). The mean stone size for lower pole stones (7.4 mm; range: 4-16 mm) was slightly smaller than non-lower pole stones (8 mm; range: 4-17 mm). The stone fragmentation was successful in 124 (62%) of patients. However, the SFR was statistically significantly better (P = 0.023) for non-lower pole stones 43 (40%) compared to lower pole stones 23 (25%). There were 9 (4%) minor complications and this was not significantly different in the two groups. Although SWL achieves a moderately high stone fragmentation rate with a low complication rate, the SFR is variable depending on the location of stone and the definition of SFR, with lower pole stones fairing significantly worse than stones in all other locations.

KIDNEY STONES: AN UPDATE ON CURRENT PHARMACOLOGICAL MANAGEMENT AND FUTURE DIRECTIONS

PubMed Central

Xu, Hongshi; Zisman, Anna L.; Coe, Fredric L.; Worcester, Elaine M.

2013-01-01

Introduction Kidney stones are a common problem worldwide with substantial morbidities and economic costs. Medical therapy reduces stone recurrence significantly. Much progress has been made in the last several decades in improving therapy of stone disease. Areas covered 1) effect of medical expulsive therapy on spontaneous stone passage, 2) pharmacotherapy in the prevention of stone recurrence, 3) future directions in the treatment of kidney stone disease. Expert Opinion fluid intake to promote urine volume of at least 2.5L each day is essential to prevent stone formation. Dietary recommendations should be adjusted based on individual metabolic abnormalities. Properly dosed thiazide treatment is the standard therapy for calcium stone formers with idiopathic hypercalciuria. Potassium alkali therapy is considered for hypocitraturia, but caution should be taken to prevent potential risk of calcium phosphate stone formation. For absorptive hyperoxaluria, low oxalate diet and increased dietary calcium intake are recommended. Pyridoxine has been shown effective in some cases of primary hyperoxaluria type I. Allopurinol is used in calcium oxalate stone formers with hyperuricosuria. Treatment of cystine stones remains challenging. Tiopronin can be used if urinary alkalinization and adequate fluid intake are insufficient. For struvite stones, complete surgical removal coupled with appropriate antibiotic therapy is necessary. PMID:23438422

Retrograde intrarenal surgery for the treatment of renal stones in children: factors influencing stone clearance and complications.

PubMed

Azili, Mujdem Nur; Ozcan, Fatma; Tiryaki, Tugrul

2014-07-01

Retrograde intrarenal surgery (RIRS) is a known option for the treatment of upper tract calculi with an excellent success. However, the reports of RIRS in prepubertal children are limited. In this study, we evaluated the factors which affected the success rate and the complications of RIRS at renal stone treatment in childhood. We retrospectively reviewed the records of children under 14 years old who underwent RIRS for renal stone disease between January 2009 and December 2012. Patients' age, gender, body mass index (BMI), stone size, stone location, stone number, intraoperative complications, stone free status, postoperative complications were recorded. There were 80 ureterorenoscopic procedures performed in 58 renal units of 47 children (23 males and 24 females). The patients' ages ranged from 8 months to 14 years (mean age 4.7 ± 3.4 years). There was a difference in the distribution of symptoms in age groups. UTI was higher in the 1-4 years age group, abdominal pain was seen mostly in children aged 5-14 years. Multiple stones (included staghorn stone) were noted in 60.4% of patients. In 27.6% of patients, ureteral stones were accompanied by renal stones in our series. In the infancy group, cystine and staghorn stones were more frequently seen, mostly bilateral. After a single ureteroscopic procedure for intrarenal stones in children, we achieved stone free status in 50.9% of the ureters (n=26). After the repeated sessions, the stone clearance rate reached to 85.1%. Retrograde intrarenal surgery can be used as a first line therapy to treat renal stones in children. This is especially important if an associated ureteral stone is present that requires treatment; or in patients with cystinuria, which is not favorably treated with ESWL. Complications were seen more frequently in patients with cystine stones. Extravasation was noted more frequently in patients admitted with UTIs. There was a significant relationship between the conversion to open procedures and the age groups, with most procedures occurring in infancy. The parents should be informed about the probability of multiple procedures to achieve stone free status. Copyright © 2014 Elsevier Inc. All rights reserved.

What happens to asymptomatic lower pole kidney stones smaller than 10 mm in children during watchful waiting?

PubMed

Telli, Onur; Hamidi, Nurullah; Bagci, Uygar; Demirbas, Arif; Hascicek, Ahmet Metin; Soygur, Tarkan; Burgu, Berk

2017-05-01

The optimal management of lower pole kidney (LPK) stones in children is controversial. The aim of this study was to determine the outcomes of children with asymptomatic isolated LPK stones smaller than 10 mm during follow-up. A total of 242 patients with 284 stones presenting at our institution between June 2004 and December 2014 with an asymptomatic, single LPK stone with a diameter of <10 mm were enrolled in the study. All children were assigned to receive first-line therapy and then categorized according to the need for medical intervention. Age, gender, stone laterality, stone size and type, associated urinary tract problems, and uncontrolled metabolic status were assessed as predictive factors of medical treatment for small (<10 mm) asymptomatic LPK stones. Stone-free rates were compared between interventions. The mean age and mean stone size were 9.4 ± 1.9 years and 7.4 ± 0.6 mm at admission, respectively. Stone progression rate was 61.2%, and the mean time for intervention was 19.2 ± 4.6 months. Flexible ureterorenoscopy (n = 68) or micro-percutaneous nephrolithotomy (n = 4) were performed for 72 stones (25.4%; group 1), and extracorporeal shock wave lithotripsy was performed for 102 stones (35.9%; group 2). The stone-free rates were 81.8 and 79.3% in group 1 and 2, respectively (p > 0.05). The remaining asymptomatic stones (110, 38.8%; group 3) were managed by continued observation, and at the end of the observation time (mean 40.8 ± 20.8 months) the spontaneous passage rate was 9.1% in this group. In the multivariate analysis, stone size of >7 mm, concurrent renal anomalies, and stones composed of magnesium ammonium phosphate (struvite) and cystine were statistically significant predictors of the need for intervention. Children with stones larger than 7 mm, renal anomalies, or stones composed of metabolically active cystine or struvite are more likely to require intervention, and those with asymptomatic LPK stones smaller than 10 mm can be managed by continued observation.

Noncontrast computed tomography can predict the outcome of shockwave lithotripsy via accurate stone measurement and abdominal fat distribution determination.

PubMed

Geng, Jiun-Hung; Tu, Hung-Pin; Shih, Paul Ming-Chen; Shen, Jung-Tsung; Jang, Mei-Yu; Wu, Wen-Jen; Li, Ching-Chia; Chou, Yii-Her; Juan, Yung-Shun

2015-01-01

Urolithiasis is a common disease of the urinary system. Extracorporeal shockwave lithotripsy (SWL) has become one of the standard treatments for renal and ureteral stones; however, the success rates range widely and failure of stone disintegration may cause additional outlay, alternative procedures, and even complications. We used the data available from noncontrast abdominal computed tomography (NCCT) to evaluate the impact of stone parameters and abdominal fat distribution on calculus-free rates following SWL. We retrospectively reviewed 328 patients who had urinary stones and had undergone SWL from August 2012 to August 2013. All of them received pre-SWL NCCT; 1 month after SWL, radiography was arranged to evaluate the condition of the fragments. These patients were classified into stone-free group and residual stone group. Unenhanced computed tomography variables, including stone attenuation, abdominal fat area, and skin-to-stone distance (SSD) were analyzed. In all, 197 (60%) were classified as stone-free and 132 (40%) as having residual stone. The mean ages were 49.35 ± 13.22 years and 55.32 ± 13.52 years, respectively. On univariate analysis, age, stone size, stone surface area, stone attenuation, SSD, total fat area (TFA), abdominal circumference, serum creatinine, and the severity of hydronephrosis revealed statistical significance between these two groups. From multivariate logistic regression analysis, the independent parameters impacting SWL outcomes were stone size, stone attenuation, TFA, and serum creatinine. [Adjusted odds ratios and (95% confidence intervals): 9.49 (3.72-24.20), 2.25 (1.22-4.14), 2.20 (1.10-4.40), and 2.89 (1.35-6.21) respectively, all p < 0.05]. In the present study, stone size, stone attenuation, TFA and serum creatinine were four independent predictors for stone-free rates after SWL. These findings suggest that pretreatment NCCT may predict the outcomes after SWL. Consequently, we can use these predictors for selecting the optimal treatment for patients with urinary stones. Copyright © 2014. Published by Elsevier Taiwan.

Cholecystolithiasis is associated with Clonorchis sinensis infection.

PubMed

Qiao, Tie; Ma, Rui-hong; Luo, Xiao-bing; Luo, Zhen-liang; Zheng, Pei-ming

2012-01-01

The objective of this study was to analyze gallbladder stones for direct evidence of a relationship between Clonorchis sinensis infection and gallbladder stones formation. We investigated one hundred eighty-three gallbladder stones for the presence of Clonorchis sinensis eggs using microscopy, and analyzed their composition using Fourier transform infrared spectroscopy. We confirmed the presence of Clonorchis sinensis eggs in the gallbladder stones using real-time fluorescent PCR and scanning electron microscopy. Clonorchis sinensis eggs were detected in 122 of 183 gallbladder stones based on morphologic characteristics and results from real-time fluorescent PCR. The proportion of pigment stones, cholesterol stones and mixed gallstones in the egg-positive stones was 79.5% (97/122), 3.3% (4/122) and 17.2% (21/122), respectively, while 29.5% (18/61), 31.1% (19/61) and 39.3% (24/61) in the egg-negative stones. The proportion of pigment stone in the Clonorchis sinensis egg-positive stones was higher than in egg-negative stones (P<0.0001). In the 30 egg-positive stones examined by scanning electron microscopy, dozens or even hundreds of Clonorchis sinensis eggs were visible (×400) showing a distinct morphology. Many eggs were wrapped with surrounding particles, and in some, muskmelon wrinkles was seen on the surface of the eggs. Also visible were pieces of texture shed from some of the eggs. Some eggs were depressed or without operculum while most eggs were adhered to or wrapped with amorphous particles or mucoid matter (×3000). Clonorchis sinensis eggs were detected in the gallbladder stones which suggests an association between Clonorchis sinensis infection and gallbladder stones formation, especially pigment stones.

[Composition of 359 kidney stones from the East region of Algeria].

PubMed

Bouslama, S; Boutefnouchet, A; Hannache, B; Djemil, T; Kadi, A; Dahdouh, A; Saka, S; Daudon, M

2016-01-01

Determine stones composition of the upper urinary tract in the eastern region of Algeria. Our study focuses on a set of 359 stones of the upper urinary tract collected between January 2007 and December 2012 at hospitals in the eastern region of Algeria and analyzed by Fourier transform infrared spectroscopy. The male/female ratio was only 1.32. Calcium oxalate prevailed in 68.5% of stones and 49.3% of nuclei, mainly as whewellite (51.8% of stones and 37.9% of nuclei vs 16.7% and 11.4% respectively for weddellite). Carbapatite prevailed in 15% of stones and 29.8% of nuclei. The struvite, identified in 11.1% of calculi, prevailed in 3.9% of stones and 3.1% of nuclei. Among purines, uric acid prevailed with frequencies quite close to 8.9% and 7% respectively in the stone and in the nucleus while the ammonium urate prevailed in only 0.3% of stones and 3.3% of nuclei. The cystine frequency was 3.6% in both stone and nucleus. The frequency of stone with umbilication was 26.2%. Whewellite was the main component of umbilicated stones with Randall's plaque. Our results suggest that stones of the urinary tract in the Algerian east region resemble those observed in industrialized countries. Some features such as stones location, the whewellite prevalence, the frequencies of main components in both the stone and the nucleus as well as the formation of stones on renal papilla confirm this trend. 4. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

12. FLOOR 2; STONE CRANE IN PLACE FOR ROCK STONES; ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

12. FLOOR 2; STONE CRANE IN PLACE FOR ROCK STONES; STONE CRANE HAS OAK SPAR, JIB AND BRACE, METAL SCREW, IRON YOKE AND DOGS; IRON PINS FIT THROUGH HOLES IN DOGS INTO HOLES DRILLED IN RUNNER STONE - Hook Windmill, North Main Street at Pantigo Road, East Hampton, Suffolk County, NY

Kidney Stones (For Parents)

MedlinePlus

... Staying Safe Videos for Educators Search English Español Kidney Stones KidsHealth / For Parents / Kidney Stones What's in ... other treatments to help remove the stones. How Kidney Stones Form It's the kidneys' job to remove ...

Pediatric ureteroscopic management of intrarenal calculi.

PubMed

Tanaka, Stacy T; Makari, John H; Pope, John C; Adams, Mark C; Brock, John W; Thomas, John C

2008-11-01

Data addressing ureteroscopic management of intrarenal calculi in prepubertal children are limited. We reviewed our experience from January 2002 through December 2007. We retrospectively reviewed ureteroscopic procedures for intrarenal calculi in children younger than 14 years. Stone-free status was determined with postoperative imaging. Multiple logistic regression analysis was used to assess the influence of preoperative factors on initial stone-free status and the need for additional procedures. Intrarenal calculi were managed ureteroscopically in 52 kidneys in 50 children with a mean age of 7.9 years (range 1.2 to 13.6). Mean stone size was 8 mm (range 1 to 16). Stone-free rate after a single ureteroscopic procedure was 50% (25 of 50 patients) on initial postoperative imaging and 58% (29 of 50) with extended followup. Initial stone-free status was dependent on preoperative stone size (p = 0.005) but not stone location. Additional stone procedures were required in 18 upper tracts. Younger patient age (p = 0.04) and larger preoperative stone size (p = 0.002) were associated with the need for additional procedures. Additional procedures were required in more than half of the stones 6 mm or larger but in no stone smaller than 6 mm. Ureteroscopy is a safe method for the treatment of intrarenal calculi in the prepubertal population. Our ureteroscopic stone-free rate for intrarenal stones is lower than that reported for ureteral stones. Parents should be informed that additional procedures will likely be required, especially in younger patients and those with stones larger than 6 mm.

Urinary stone composition in Oman: with high incidence of cystinuria.

PubMed

Al-Marhoon, Mohammed S; Bayoumi, Riad; Al-Farsi, Yahya; Al-Hinai, Abdullhakeem; Al-Maskary, Sultan; Venkiteswaran, Krishna; Al-Busaidi, Qassim; Mathew, Josephkunju; Rhman, Khalid; Sharif, Omar; Aquil, Shahid; Al-Hashmi, Intisar

2015-06-01

Urinary stones are a common problem in Oman and their composition is unknown. The aim of this study is to analyze the components of urinary stones of Omani patients and use the obtained data for future studies of etiology, treatment, and prevention. Urinary stones of 255 consecutive patients were collected at the Sultan Qaboos University Hospital. Stones were analyzed by Fourier transform infrared spectrophotometer. The biochemical, metabolic, and radiological data relating to the patients and stones were collected. The mean age was 41 years, with M:F ratio of 3.7:1. The common comorbidities associated with stone formation were hypertension; diabetes, benign prostate hyperplasia; urinary tract infection; obesity; and atrophic kidney. The common presentation was renal colic and flank pain (96%). Stones were surgically retrieved in 70% of patients. Mean stone size was 9 ± 0.5 mm (range 1.3-80). Stone formers had a BMI ≥ 25 in 56% (P = 0.006) and positive family history of stones in 3.8%. The most common stones in Oman were as follows: Calcium Oxalates 45% (114/255); Mixed calcium phosphates & calcium oxalates 22% (55/255); Uric Acid 16% (40/255); and Cystine 4% (10/255). The most common urinary stones in Oman are Calcium Oxalates. Overweight is an important risk factor associated with stone formation. The hereditary Cystine stones are three times more common in Oman than what is reported in the literature that needs further genetic studies.

Laser-induced breakdown spectroscopy is a reliable method for urinary stone analysis

PubMed Central

Mutlu, Nazım; Çiftçi, Seyfettin; Gülecen, Turgay; Öztoprak, Belgin Genç; Demir, Arif

2016-01-01

Objective We compared laser-induced breakdown spectroscopy (LIBS) with the traditionally used and recommended X-ray diffraction technique (XRD) for urinary stone analysis. Material and methods In total, 65 patients with urinary calculi were enrolled in this prospective study. Stones were obtained after surgical or extracorporeal shockwave lithotripsy procedures. All stones were divided into two equal pieces. One sample was analyzed by XRD and the other by LIBS. The results were compared by the kappa (κ) and Spearman’s correlation coefficient (rho) tests. Results Using LIBS, 95 components were identified from 65 stones, while XRD identified 88 components. LIBS identified 40 stones with a single pure component, 20 stones with two different components, and 5 stones with three components. XRD demonstrated 42 stones with a single component, 22 stones with two different components, and only 1 stone with three different components. There was a strong relationship in the detection of stone types between LIBS and XRD for stones components (Spearman rho, 0.866; p<0.001). There was excellent agreement between the two techniques among 38 patients with pure stones (κ index, 0.910; Spearman rho, 0.916; p<0.001). Conclusion Our study indicates that LIBS is a valid and reliable technique for determining urinary stone composition. Moreover, it is a simple, low-cost, and nondestructive technique. LIBS can be safely used in routine daily practice if our results are supported by studies with larger numbers of patients. PMID:27011877

Direct peroral cholangioscopy using an ultraslim upper endoscope for management of residual stones after mechanical lithotripsy for retained common bile duct stones.

PubMed

Lee, Y N; Moon, J H; Choi, H J; Min, S K; Kim, H I; Lee, T H; Cho, Y D; Park, S-H; Kim, S-J

2012-09-01

The incidence of residual stones after mechanical lithotripsy for retained common bile duct (CBD) stones is relatively high. Peroral cholangioscopy using a mother-baby system may be useful for confirming complete extraction of stones, but has several limitations regarding routine use. We evaluated the role of direct peroral cholangioscopy (DPOC) using an ultraslim upper endoscope for the evaluation and removal of residual CBD stones after mechanical lithotripsy. From August 2006 to November 2010, 48 patients who had undergone mechanical lithotripsy for retained CBD stones with no evidence of filling defects in balloon cholangiography were recruited. The bile duct was inspected by DPOC after balloon cholangiography. Detected residual CBD stones were directly retrieved with a basket or balloon catheter under DPOC. The incidence of residual stones detected by DPOC, and the success rate of residual stone retrieval under DPOC were investigated. DPOC was successfully performed in 46 of the 48 patients (95.8%). Of these, 13 patients (28.3%) had residual CBD stones (mean number 1.4, range 1-3; mean diameter 4.5 mm, range 2.3-9.6). The residual stones were removed directly under DPOC in 11 of these patients (84.6%). There were no complications associated with DPOC or stone removal. DPOC using an ultraslim upper endoscope is a useful endoscopic procedure for the evaluation and extraction of residual stones after mechanical lithotripsy for retained CBD stones. © Georg Thieme Verlag KG Stuttgart · New York.

Calcium carbonate gallstones in children.

PubMed

Stringer, Mark D; Soloway, Roger D; Taylor, Donald R; Riyad, Kallingal; Toogood, Giles

2007-10-01

In the United States, cholesterol stones account for 70% to 95% of adult gallstones and black pigment stones for most of the remainder. Calcium carbonate stones are exceptionally rare. A previous analysis of a small number of pediatric gallstones from the north of England showed a remarkably high prevalence of calcium carbonate stones. The aims of this study were to analyze a much larger series of pediatric gallstones from our region and to compare their chemical composition with a series of adult gallstones from the same geographic area. A consecutive series of gallbladder stones from 63 children and 50 adults from the north of England were analyzed in detail using Fourier transform infrared microspectroscopy. Demographic and clinical data were collected on all patients. The relative proportions of each major stone component were assessed: cholesterol, protein and calcium salts of bilirubin, fatty acids, calcium carbonate, and hydroxyapatite. Thirty-nine (78%) adults had typical cholesterol stones, 7 (14%) had black pigment bilirubinate stones, and only 2 (4%) had calcium carbonate stones. In contrast, 30 (48%) children had black pigment stones, 13 (21%) had cholesterol stones, 15 (24%) had calcium carbonate stones, 3 (5%) had protein dominant stones, and 2 (3%) had brown pigment stones. In children, cholesterol stones were more likely in overweight adolescent girls with a family history of gallstones, whereas black pigment stones were equally common in boys and girls and associated with hemolysis, parenteral nutrition, and neonatal abdominal surgery. Calcium carbonate stones were more common in boys, and almost half had undergone neonatal abdominal surgery and/or required neonatal intensive care. The composition of pediatric gallstones differs significantly from that found in adults. In particular, one quarter of the children in this series had calcium carbonate stones, previously considered rare. Geographic differences are not the major reason for the high prevalence of calcium carbonate gallstones in children.

Compositional analysis of various layers of upper urinary tract stones by infrared spectroscopy

PubMed Central

He, Zhang; Jing, Zhang; Jing-Cun, Zheng; Chuan-Yi, Hu; Fei, Gao

2017-01-01

The objective of the present study was to determine the composition of various layers of upper urinary stones and assess the mechanisms of stone nucleation and aggregation. A total of 40 integrated urinary tract stones with a diameter of >0.8 cm were removed from the patients. All of the stones were cut in half perpendicularly to the longitudinal axis. Samples were selected from nuclear, internal and external layers of each stone. Fourier transform infrared spectroscopy (FT-IR) was adopted for qualitative and quantitative analysis of all of the fragments and compositional differences among nuclear, internal and external layers of various types of stone were subsequently investigated. A total of 25 cases of calcium oxalate (CaOx) stones and 10 cases of calcium phosphate (CaP) stones were identified to be mixed stones, while 5 uric acid (UA) calculi were pure stones (purity, >95%). In addition, the contents of CaOx and carbapatite (CA.AP) crystals in various layers of the mixed stones were found to be variable. In CaOx stones, the content of CA.AP in nuclear layers was significantly higher than that of the outer layers (32.0 vs. 6.8%; P<0.05), while the content of CaOx was lower in the inner than in the outer layers (57.6 vs. 86.6%; P<0.05). In CaP stones, the content of CA.AP in the nuclear layers was higher than that in the outer layers (74.0 vs. 47.3%; P<0.05), while the content of CaOx was lower in the inner than in the outer layers (7.0 vs. 40.0%; P<0.05). The UA stones showed no significant differences in their composition among different layers. In conclusion, FT-IR analysis of various layers of human upper urinary tract stones revealed that CaOx and CaP stones showed differences in composition between their core and surface, while all of the UA calculi were pure stones. The composition showed a marked variation among different layers of the stones, indicating that metabolism has an important role in different phases of the evolution of stones. The present study provided novel insight into the pathogenesis of urinary tract stones and may contribute to their prevention and treatment. PMID:28912866

Comparative testing of reliability and audit utility of ordinal objective calculus complexity scores. Can we make an informed choice yet?

PubMed

Jaipuria, Jiten; Suryavanshi, Manav; Sen, Tridib K

2016-12-01

To assess the reliability of the Guy's Stone Score, the Seoul National University Renal Stone Complexity (S-ReSC) score and the S.T.O.N.E. scores in percutaneous nephrolithotomy (PCNL), and assess their utility in discriminating outcomes [stone free rate (SFR), complications, need for multiple PCNL sessions, and auxiliary procedures] valid across parameters of experience of surgeon, independence from surgical approach, and variations in institution-specific instrumentation. A prospectively maintained database of two tertiary institutions was analysed (606 cases). Institutes differed in instrumentation, while the overall surgical team comprised: two trainees (experience <100 cases), two junior consultants (experience 100-200 cases), and two senior surgeons (experience >1000 cases). Scores were assigned and re-assigned after 4 months by one trainee and an expert surgeon. Inter-rater and test-retest agreement were analysed by Cohen's κ and intraclass correlation coefficient. Multivariate logistic regression models were created adjusting outcomes for the institution, comorbidity, Amplatz size, access tract location, the number of punctures, the experience level of the surgeon, and individual scoring system, and receiver operating curves were analysed for comparison. Despite some areas of inconsistencies, individually all scores had excellent inter-rater and test-retest concordance. On multivariable analyses, while the experience of the surgeon and surgical approach characteristics (such as access tract location, Amplatz size, and number of punctures) remained independently associated with different outcomes in varying combinations, calculus complexity scores were found consistently to be independently associated with all outcomes. The S-ReSC score had a superior association with SFR, the need for multiple PCNL sessions, and auxiliary procedures. Individually all scoring systems performed well. On cross comparison, the S-ReSC score consistently emerged to be more superiorly associated with all outcomes, signifying the importance of the distributional complexity of the calculus (which also indirectly amalgamates the influence of stone number, size, and anatomical location) in discriminating outcomes. Our study proves the utility of scoring systems in prognosticating multiple outcomes and also clarifies important aspects of their practical application including future roles such as benchmarking, audit, training, and objective assessment of surgical technique modifications. © 2016 The Authors BJU International © 2016 BJU International Published by John Wiley & Sons Ltd.

Surgical management of pediatric urolithiasis

PubMed Central

Mishra, Shashi K.; Ganpule, A.; Manohar, T.; Desai, Mahesh R.

2007-01-01

Pediatric urolithiasis poses a technical challenge to the urologist. A review of the recent literature on the subject was performed to highlight the various treatment modalities in the management of pediatric stones. A Medline search was used to identify manuscripts dealing with management options such as percutaneous nephrolithotomy, shock wave lithotripsy, ureteroscopy and cystolithotripsy in pediatric stone diseases. We also share our experience on the subject. Shock wave lithotripsy should be the treatment modality for renal stone less than 1cm or < 150 mm2 and proximal non-impacted ureteric stone less than 1 cm with normal renal function, no infection and favorable anatomy. Indications for PCNL in children are large burden stone more than 2cm or more than 150mm2 with or without hydronephrosis, urosepsis and renal insufficiency, more than 1cm impacted upper ureteric stone, failure of SWL and significant volume of residual stones after open surgery. Shock wave lithotripsy can be offered for more soft (< 900 HU on CT scan) renal stones between 1-2cm. Primary vesical stone more than 1cm can be tackled with percutaneous cystolithomy or open cystolithotomy. Open renal stone surgery can be done for renal stones with associated structural abnormalities, large burden infective and staghorn stones, large impacted proximal ureteric stone. The role of laparoscopic surgery for stone disease in children still needs to be explored. PMID:19718300

Analysis of the utility of stone gram stain in urolithiasis treated with percutaneous nephrolithotomy.

PubMed

Cockerill, Patrick A; Rivera, Marcelino E; Krambeck, Amy E

2014-06-01

To define the sensitivity and specificity of stone gram stain for infected urolithiasis treated with percutaneous nephrolithotomy (PCNL). PCNL procedures performed at our institution were analyzed between January 2009 and May 2013. Stone fragments were sent in a sterile fashion for aerobic and fungal cultures. A gram stain and fungal smear were performed on the stones and reported within 24 hours of collection. A total of 228 patients underwent 248 PCNLs. Of the 248 stones, 81 (33%) had a positive stone culture. Stone gram stain was positive in 31 cases and negative in 50. There were 167 negative stone cultures, and in these cases, gram stain was positive in 5 and negative in 162. The calculated sensitivity and specificity of stone gram stain were 38% and 97%. The positive and negative predictive values were 86% and 76%, respectively. In the subset of 16 patients with positive stone fungal cultures, fungal smear was performed in 12 and was positive in 4, giving fungal smear a sensitivity of 33%. The results of this study suggest that stone gram stain cannot be relied on to detect a positive stone culture and may fail to detect up to 62% of infected stones. However, when positive, gram stain accurately predicts a positive stone culture in 86% of cases. Copyright © 2014 Elsevier Inc. All rights reserved.

Treatment and prevention of kidney stones: an update.

PubMed

Frassetto, Lynda; Kohlstadt, Ingrid

2011-12-01

The incidence of nephrolithiasis (kidney stones) is rising worldwide, especially in women and with increasing age. Kidney stones are associated with chronic kidney disease. Preventing recurrence is largely specific to the type of stone (e.g., calcium oxalate, calcium phosphate, cystine, struvite [magnesium ammonium phosphate]), and uric acid stones); however, even when the stone cannot be retrieved, urine pH and 24-hour urine assessment provide information about stone-forming factors that can guide prevention. Medications, such as protease inhibitors, antibiotics, and some diuretics, increase the risk of some types of kidney stones, and patients should be counseled about the risks of using these medications. Managing diet, medication use, and nutrient intake can help prevent the formation of kidney stones. Obesity increases the risk of kidney stones. However, weight loss could undermine prevention of kidney stones if associated with a high animal protein intake, laxative abuse, rapid loss of lean tissue, or poor hydration. For prevention of calcium oxalate, cystine, and uric acid stones, urine should be alkalinized by eating a diet high in fruits and vegetables, taking supplemental or prescription citrate, or drinking alkaline mineral waters. For prevention of calcium phosphate and struvite stones, urine should be acidified; cranberry juice or betaine can lower urine pH. Antispasmodic medications, ureteroscopy, and metabolic testing are increasingly being used to augment fluid and pain medications in the acute management of kidney stones.

Development of upper tract stones in patients with congenital neurogenic bladder.

PubMed

Stephany, Heidi A; Clayton, Douglass B; Tanaka, Stacy T; Thomas, John C; Pope, John C; Brock, John W; Adams, Mark C

2014-02-01

Patients with neurogenic bladder are at increased risk of developing upper tract stones. We hypothesized that patients with lower urinary tract stone disease are at greater risk of developing upper tract stones. We performed a 10-year retrospective case-control study of patients with neurogenic bladder to determine the association between bladder and upper tract stones. Independent risk factors for upper tract stones were assessed. Cases and controls were matched 1:1. Univariable analysis was performed by Fisher's exact test and the Mann-Whitney U test. Multivariable logistic regression was performed. 52 cases and controls were identified. Cases were significantly more likely to be non-ambulatory, have bowel-urinary tract interposition, thoracic level dysraphism, and history of bladder stones. On multivariable analysis, independent predictors of stone formation were male sex (OR 2.82; p = 0.02), dysraphism involving the thoracic spine (OR 3.37; p = 0.014) bowel-urinary tract interposition (OR 2.611; p = 0.038), and a history of bladder stones (OR 3.57; p = 0.015). Patients with neurogenic bladder are at increased risk for upper tract stones. The presence of bladder stones may herald the development of upper tract stones. The predictors of stone disease identified should guide prospective studies to better understand the natural history of upper tract stone development in this population. Copyright © 2013 Journal of Pediatric Urology Company. Published by Elsevier Ltd. All rights reserved.

Protein content of human apatite and brushite kidney stones: significant correlation with morphologic measures.

PubMed

Pramanik, Rocky; Asplin, John R; Jackson, Molly E; Williams, James C

2008-10-01

Apatite and brushite kidney stones share calcium and phosphate as their main inorganic components. We tested the hypothesis that these stone types differ in the amount of proteins present in the stones. Intact stones were intensively analyzed by microcomputed tomography (micro CT) for both morphology (including the volume of voids, i.e., space devoid of X-ray dense material) and mineral type. To extract all proteins present in kidney stones in soluble form we developed a three-step extraction procedure using the ground stone powder. Apatite stones had significantly higher levels of total protein content and void volume compared to brushite stones. The void volume was highly correlated with the total protein contents in all stones (r2 = 0.61, P < 0.0001), and brushite stones contained significantly fewer void regions and proteins than did apatite stones (3.2 +/- 4.5% voids for brushite vs. 10.8 +/- 11.2% for apatite, P < 0.005; 4.1 +/- 1.6% protein for brushite vs. 6.0 +/- 2.4% for apatite, P < 0.03). Morphological observations other than void volume did not correlate with protein content of stones, and neither did the presence or absence of minor mineral components. Our results show that protein content of brushite and apatite stones is higher than that was previously thought, and also suggest that micro CT-visible void regions are related to the presence of protein.

Epidemiological study of urinary tract stones in a northern Italian city.

PubMed

Borghi, L; Ferretti, P P; Elia, G F; Amato, F; Melloni, E; Trapassi, M R; Novarini, A

1990-03-01

An epidemiological study of stone disease in a Northern Italian city was carried out by means of a postal questionnaire mailed to 6000 individuals (2.5% of the entire population). It was found that the incidence of stone disease was comparable to that of industrialised Western Europe. There was a relationship between stone disease and gout and stone disease and a positive family history. The frequency of uric acid stones was high (26.5%). Stone-formers showed no alimentary differences from non-stone formers apart from the use of spices and herbs. Stone-formers used less water from public aqueducts and more uncarbonated mineral water, but only 19% of these drank at least 2 litres a day.

Motion artifacts in kidney stone imaging using single-source and dual-source dual-energy CT scanners: a phantom study.

PubMed

Ibrahim, El-Sayed H; Cernigliaro, Joseph G; Pooley, Robert A; Williams, James C; Haley, William E

2015-10-01

Dual-energy computed tomography (DECT) has shown the capability of differentiating uric acid (UA) from non-UA stones with 90-100% accuracy. With the invention of dual-source (DS) scanners, both low- and high-energy images are acquired simultaneously. However, DECT can also be performed by sequential acquisition of both images on single-source (SS) scanners. The objective of this study is to investigate the effects of motion artifacts on stone classification using both SS-DECT and DS-DECT. 114 kidney stones of different types and sizes were imaged on both DS-DECT and SS-DECT scanners with tube voltages of 80 and 140 kVp with and without induced motion. Postprocessing was conducted to create material-specific images from corresponding low- and high-energy images. The dual-energy ratio (DER) and stone material were determined and compared among different scans. For the motionless scans, all stones were correctly classified with SS-DECT, while two cystine stones were misclassified with DS-DECT. When motion was induced, 94% of the stones were misclassified with SS-DECT versus 11% with DS-DECT (P < 0.0001). Stone size was not a factor in stone misclassification under motion. Stone type was not a factor in stone misclassification under motion with SS-DECT, although with DS-DECT, cystine showed higher number of stone misclassification. Motion artifacts could result in stone misclassification in DECT. This effect is more pronounced in SS-DECT versus DS-DECT, especially if stones of different types lie in close proximity to each other. Further, possible misinterpretation of the number of stones (i.e., missing one, or thinking that there are two) in DS-DECT could be a potentially significant problem.

After urgent drainage of an obstructed kidney by internal ureteric stenting; is ureteroscopic stone extraction always needed?

PubMed Central

Taha, Diaa-Eldin; Elshal, Ahmed M.; Zahran, Mohamed H.; Harraz, Ahmed M.; El-Nahas, Ahmed R.; Shokeir, Ahmed A.

2015-01-01

Objectives To assess the probability of spontaneous stone passage and its predictors after drainage of obstructed kidney by JJ stent, as insertion of an internal ureteric stent is often used for renal drainage in cases of calcular ureteric obstruction. Patients and methods Between January 2011 and June 2013, patients for whom emergent drainage by ureteric stents were identified. The patients’ demographics, presentation, and stone characteristics were reviewed. The primary endpoint for this study was stone-free status at the time of stent removal, where all patients underwent non-contrast spiral computed tomography (NCCT) before stent removal. Ureteroscopic stone extraction was performed for CT detectable ureteric stones at the time of stent removal. Potential factors affecting the need for ureteroscopic stone extraction at the time of stent removal were assessed using univariate and multivariate statistical analyses. Results Emergent ureteric stents were undertaken in 196 patients (112 males, 84 females) with a mean (SD) age of 53.7 (16.2) years, for renal obstruction drainage. At the time of stent removal, 83 patients (42.3%) were stone free; with the remaining 113 patients (57.7%) undergoing ureteroscopic stone extraction. On multivariate analysis, stone width [odds ratio (OR) 15.849, 95% confidence interval (CI) 2.83; P = 0.002) and radio-opaque stones (OR 12.035, 95% CI 4.65; P < 0.001) were independent predictors of the need for ureteroscopic stone extraction at the time of stent removal. Conclusion Spontaneous ureteric stone passage is possible after emergent drainage of an obstructed kidney by ureteric stenting. Stone opacity, larger stone width, and positive preoperative urine culture are associated with a greater probability of requiring ureteroscopic stone extraction after emergent drainage by ureteric stenting. PMID:26609444

Retrospective comparison of measured stone size and posterior acoustic shadow width in clinical ultrasound images.

PubMed

Dai, Jessica C; Dunmire, Barbrina; Sternberg, Kevan M; Liu, Ziyue; Larson, Troy; Thiel, Jeff; Chang, Helena C; Harper, Jonathan D; Bailey, Michael R; Sorensen, Mathew D

2018-05-01

Posterior acoustic shadow width has been proposed as a more accurate measure of kidney stone size compared to direct measurement of stone width on ultrasound (US). Published data in humans to date have been based on a research using US system. Herein, we compared these two measurements in clinical US images. Thirty patient image sets where computed tomography (CT) and US images were captured less than 1 day apart were retrospectively reviewed. Five blinded reviewers independently assessed the largest stone in each image set for shadow presence and size. Shadow size was compared to US and CT stone sizes. Eighty percent of included stones demonstrated an acoustic shadow; 83% of stones without a shadow were ≤ 5 mm on CT. Average stone size was 6.5 ± 4.0 mm on CT, 10.3 ± 4.1 mm on US, and 7.5 ± 4.2 mm by shadow width. On average, US overestimated stone size by 3.8 ± 2.4 mm based on stone width (p < 0.001) and 1.0 ± 1.4 mm based on shadow width (p < 0.0098). Shadow measurements decreased misclassification of stones by 25% among three clinically relevant size categories (≤ 5, 5.1-10, > 10 mm), and by 50% for stones ≤ 5 mm. US overestimates stone size compared to CT. Retrospective measurement of the acoustic shadow from the same clinical US images is a more accurate reflection of true stone size than direct stone measurement. Most stones without a posterior shadow are ≤ 5 mm.

Cholecystolithiasis Is Associated with Clonorchis sinensis Infection

PubMed Central

Qiao, Tie; Ma, Rui-hong; Luo, Xiao-bing; Luo, Zhen-liang; Zheng, Pei-ming

2012-01-01

Background The objective of this study was to analyze gallbladder stones for direct evidence of a relationship between Clonorchis sinensis infection and gallbladder stones formation. Methodology We investigated one hundred eighty-three gallbladder stones for the presence of Clonorchis sinensis eggs using microscopy, and analyzed their composition using Fourier transform infrared spectroscopy. We confirmed the presence of Clonorchis sinensis eggs in the gallbladder stones using real-time fluorescent PCR and scanning electron microscopy. Principal Findings Clonorchis sinensis eggs were detected in 122 of 183 gallbladder stones based on morphologic characteristics and results from real-time fluorescent PCR. The proportion of pigment stones, cholesterol stones and mixed gallstones in the egg-positive stones was 79.5% (97/122), 3.3% (4/122) and 17.2% (21/122), respectively, while 29.5% (18/61), 31.1% (19/61) and 39.3% (24/61) in the egg-negative stones. The proportion of pigment stone in the Clonorchis sinensis egg-positive stones was higher than in egg-negative stones (P<0.0001). In the 30 egg-positive stones examined by scanning electron microscopy, dozens or even hundreds of Clonorchis sinensis eggs were visible (×400) showing a distinct morphology. Many eggs were wrapped with surrounding particles, and in some, muskmelon wrinkles was seen on the surface of the eggs. Also visible were pieces of texture shed from some of the eggs. Some eggs were depressed or without operculum while most eggs were adhered to or wrapped with amorphous particles or mucoid matter (×3000). Conclusion Clonorchis sinensis eggs were detected in the gallbladder stones which suggests an association between Clonorchis sinensis infection and gallbladder stones formation, especially pigment stones. PMID:22905137

The natural history of nonobstructing asymptomatic renal stones managed with active surveillance.

PubMed

Dropkin, Benjamin M; Moses, Rachel A; Sharma, Devang; Pais, Vernon M

2015-04-01

We documented the natural history of asymptomatic nonobstructing renal calculi managed with active surveillance and explored factors predicting stone related events to better inform shared decision making. Patients with asymptomatic nonobstructing renal calculi electing active surveillance of their stone(s) were retrospectively reviewed. Stone characteristics, patient characteristics, and stone related events were collected. We evaluated the effects of stone size and location on development of symptoms, spontaneous passage, requirement for surgical intervention, and stone growth. We identified 160 stones with an average size of 7.0 ± 4.2 mm among 110 patients with average followup of 41 ± 19 months. Forty-five (28% of total) stones caused symptoms during followup. Notably 3 stones (3% of asymptomatic subgroup, 2% of total stones) caused painless silent obstruction necessitating intervention after an average of 37 ± 17 months. The only significant predictor of spontaneous passage or symptom development was location. Upper pole/mid renal stones were more likely than lower pole stones to become symptomatic (40.6% vs 24.3%, p = 0.047) and to pass spontaneously (14.5% vs 2.9%, p = 0.016). Among asymptomatic nonobstructing renal calculi managed with active surveillance, most remained asymptomatic through an average followup of more than 3 years. Less than 30% caused renal colic, less than 20% were operated on for pain and 7% spontaneously passed. Lower poles stones were significantly less likely to cause symptoms or pass spontaneously. Despite 3 stones causing silent hydronephrosis suggestive of obstruction, regular followup imaging facilitated interventions that prevented renal loss. Copyright © 2015 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Accurately Diagnosing Uric Acid Stones from Conventional Computerized Tomography Imaging: Development and Preliminary Assessment of a Pixel Mapping Software.

PubMed

Ganesan, Vishnu; De, Shubha; Shkumat, Nicholas; Marchini, Giovanni; Monga, Manoj

2018-02-01

Preoperative determination of uric acid stones from computerized tomography imaging would be of tremendous clinical use. We sought to design a software algorithm that could apply data from noncontrast computerized tomography to predict the presence of uric acid stones. Patients with pure uric acid and calcium oxalate stones were identified from our stone registry. Only stones greater than 4 mm which were clearly traceable from initial computerized tomography to final composition were included in analysis. A semiautomated computer algorithm was used to process image data. Average and maximum HU, eccentricity (deviation from a circle) and kurtosis (peakedness vs flatness) were automatically generated. These parameters were examined in several mathematical models to predict the presence of uric acid stones. A total of 100 patients, of whom 52 had calcium oxalate and 48 had uric acid stones, were included in the final analysis. Uric acid stones were significantly larger (12.2 vs 9.0 mm, p = 0.03) but calcium oxalate stones had higher mean attenuation (457 vs 315 HU, p = 0.001) and maximum attenuation (918 vs 553 HU, p <0.001). Kurtosis was significantly higher in each axis for calcium oxalate stones (each p <0.001). A composite algorithm using attenuation distribution pattern, average attenuation and stone size had overall 89% sensitivity, 91% specificity, 91% positive predictive value and 89% negative predictive value to predict uric acid stones. A combination of stone size, attenuation intensity and attenuation pattern from conventional computerized tomography can distinguish uric acid stones from calcium oxalate stones with high sensitivity and specificity. Copyright © 2018 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Risk Factors for Stone Recurrence after Percutaneous Nephrolithotomy

NASA Astrophysics Data System (ADS)

Krambeck, Amy E.; Rangel, Laureano J.; LeRoy, Andrew J.; Patterson, David E.; Gettman, Matthew T.

2008-09-01

Recent studies have demonstrated more than 30% of percutaneous nephrolithotomy (PCNL) patients will experience a stone recurrence over a 20 year period. The goal of our study was to identify risk factors for stone recurrence after PCNL. Chart review identified 754 patients treated with PCNL for urolithiasis from March of 1983 to July 1984 at our institution. Of this cohort, 87 patients continued to receive medical care at our clinic and had been evaluated within the last 5 years. Of the 87 patients, 80 had recent radiographic imaging. Average follow-up was 19.2 years and 32 (40.0%) experienced at least 1 stone recurrence. There was no difference in preoperative BMI (p = 0.453) or change in BMI (p = 0.964) between patients that did and did not have a stone recurrence. Renal stone location (p = 0.605) and stone size (p = 0.238) were not predictive of recurrence. Patients with calcium oxalate monohydrate stones were less likely to recur (38.7% vs. 41.6%, p = 0.004) and those with calcium oxalate dihydrate (COD) were more likely to recur (31.1% vs. 19.6%, p = 0.006) compared to other compositions. Diabetes mellitus was not associated with recurrent stones (p = 0.810). Those patients with residual stones or fragments <3 mm were more likely to recur and to recur earlier than patients rendered entirely stone free at time of PCNL (p = 0.015). Stone recurrences were associated with the late development of renal insufficiency (25% vs. 2.1%, p = 0.002). In conclusion, stone composition, as well as the presence of residual fragments was associated with recurrent symptomatic stone events after PCNL. Recurrent stone events were significantly associated with the risk of developing renal insufficiency, further stressing the need for complete stone clearance at time of PCNL.

A neural network - based algorithm for predicting stone -free status after ESWL therapy

PubMed Central

Seckiner, Ilker; Seckiner, Serap; Sen, Haluk; Bayrak, Omer; Dogan, Kazım; Erturhan, Sakip

2017-01-01

ABSTRACT Objective: The prototype artificial neural network (ANN) model was developed using data from patients with renal stone, in order to predict stone-free status and to help in planning treatment with Extracorporeal Shock Wave Lithotripsy (ESWL) for kidney stones. Materials and Methods: Data were collected from the 203 patients including gender, single or multiple nature of the stone, location of the stone, infundibulopelvic angle primary or secondary nature of the stone, status of hydronephrosis, stone size after ESWL, age, size, skin to stone distance, stone density and creatinine, for eleven variables. Regression analysis and the ANN method were applied to predict treatment success using the same series of data. Results: Subsequently, patients were divided into three groups by neural network software, in order to implement the ANN: training group (n=139), validation group (n=32), and the test group (n=32). ANN analysis demonstrated that the prediction accuracy of the stone-free rate was 99.25% in the training group, 85.48% in the validation group, and 88.70% in the test group. Conclusions: Successful results were obtained to predict the stone-free rate, with the help of the ANN model designed by using a series of data collected from real patients in whom ESWL was implemented to help in planning treatment for kidney stones. PMID:28727384

Chronic Kidney Disease in Kidney Stone Formers

PubMed Central

Krambeck, Amy E.; Lieske, John C.

2011-01-01

Summary Recent population studies have found symptomatic kidney stone formers to be at increased risk for chronic kidney disease (CKD). Although kidney stones are not commonly identified as the primary cause of ESRD, they still may be important contributing factors. Paradoxically, CKD can be protective against forming kidney stones because of the substantial reduction in urine calcium excretion. Among stone formers, those with rare hereditary diseases (cystinuria, primary hyperoxaluria, Dent disease, and 2,8 dihydroxyadenine stones), recurrent urinary tract infections, struvite stones, hypertension, and diabetes seem to be at highest risk for CKD. The primary mechanism for CKD from kidney stones is usually attributed to an obstructive uropathy or pyelonephritis, but crystal plugs at the ducts of Bellini and parenchymal injury from shockwave lithotripsy may also contribute. The historical shift to less invasive surgical management of kidney stones has likely had a beneficial impact on the risk for CKD. Among potential kidney donors, past symptomatic kidney stones but not radiographic stones found on computed tomography scans were associated with albuminuria. Kidney stones detected by ultrasound screening have also been associated with CKD in the general population. Further studies that better classify CKD, better characterize stone formers, more thoroughly address potential confounding by comorbidities, and have active instead of passive follow-up to avoid detection bias are needed. PMID:21784825

Regional differences in constituents of gall stones.

PubMed

Ashok, M; Nageshwar Reddy, D; Jayanthi, V; Kalkura, S N; Vijayan, V; Gokulakrishnan, S; Nair, K G M

2005-01-01

The pathogenesis of pigment and mixed gall stone formation remains elusive. The elemental constituents of gall stones from southern states of Tamil Nadu, Kerala and Karnataka have been characterized. Our aim was to determine the elemental concentration of representative samples of pigment, mixed and cholesterol gall stones from Andhra Pradesh using proton-induced X-ray emission (PIXE) using a 3 MV horizontal pelletron accelerator. Pigment gall stones had significantly high concentrations of copper, iron and lead; chromium was absent. Except for iron all these elements were significantly low in cholesterol gall stones and intermediate levels were seen in mixed gall stones. Highest concentrations of chromium was seen in cholesterol and titanium in mixed gall stones respectively; latter similar to other southern states. Arsenic was distinctly absent in cholesterol and mixed gall stones. The study has identified differences in elemental components of the gall stones from Andhra Pradesh.

Kometen und Asteroiden

NASA Astrophysics Data System (ADS)

Borgeest, Ulf; Staude, Jakob; Hahn, Gerhard; Harris, Alan W.; Jaumann, Ralf; Köhler, Ulrich; Kührt, Ekkehard; Schulz, Rita; Neukum, Gerhard; Arnold, Gabriele; Keller, Horst Uwe; Denk, Tilmann; Müller, Thomas; Wulff, André; Maruhn, Nicolaus; Fischer, Daniel; Trieloff, Mario; Althaus, Tilmann

Contents: Die Kleinkörper des Sonnensystems. Kern, Koma und Schweife. Ziele der Planetenforschung. ROSETTA: Naherkundung von Kometen. Asteroiden: Trümmer aus planetarer Urzeit. Kleinkörper im Infrarotweltall. Selbs beobachten! Apocalypse - not now! Meteoriten - Boten aus der Urzeit des Sonnensystems.

Rosetta's comet 67P/Churyumov-Gerasimenko sheds its dusty mantle to reveal its icy nature.

PubMed

Fornasier, S; Mottola, S; Keller, H U; Barucci, M A; Davidsson, B; Feller, C; Deshapriya, J D P; Sierks, H; Barbieri, C; Lamy, P L; Rodrigo, R; Koschny, D; Rickman, H; A'Hearn, M; Agarwal, J; Bertaux, J-L; Bertini, I; Besse, S; Cremonese, G; Da Deppo, V; Debei, S; De Cecco, M; Deller, J; El-Maarry, M R; Fulle, M; Groussin, O; Gutierrez, P J; Güttler, C; Hofmann, M; Hviid, S F; Ip, W-H; Jorda, L; Knollenberg, J; Kovacs, G; Kramm, R; Kührt, E; Küppers, M; Lara, M L; Lazzarin, M; Moreno, J J Lopez; Marzari, F; Massironi, M; Naletto, G; Oklay, N; Pajola, M; Pommerol, A; Preusker, F; Scholten, F; Shi, X; Thomas, N; Toth, I; Tubiana, C; Vincent, J-B

2016-12-23

The Rosetta spacecraft has investigated comet 67P/Churyumov-Gerasimenko from large heliocentric distances to its perihelion passage and beyond. We trace the seasonal and diurnal evolution of the colors of the 67P nucleus, finding changes driven by sublimation and recondensation of water ice. The whole nucleus became relatively bluer near perihelion, as increasing activity removed the surface dust, implying that water ice is widespread underneath the surface. We identified large (1500 square meters) ice-rich patches appearing and then vanishing in about 10 days, indicating small-scale heterogeneities on the nucleus. Thin frosts sublimating in a few minutes are observed close to receding shadows, and rapid variations in color are seen on extended areas close to the terminator. These cyclic processes are widespread and lead to continuously, slightly varying surface properties. Copyright © 2016, American Association for the Advancement of Science.

Cometary science. Time variability and heterogeneity in the coma of 67P/Churyumov-Gerasimenko.

PubMed

Hässig, M; Altwegg, K; Balsiger, H; Bar-Nun, A; Berthelier, J J; Bieler, A; Bochsler, P; Briois, C; Calmonte, U; Combi, M; De Keyser, J; Eberhardt, P; Fiethe, B; Fuselier, S A; Galand, M; Gasc, S; Gombosi, T I; Hansen, K C; Jäckel, A; Keller, H U; Kopp, E; Korth, A; Kührt, E; Le Roy, L; Mall, U; Marty, B; Mousis, O; Neefs, E; Owen, T; Rème, H; Rubin, M; Sémon, T; Tornow, C; Tzou, C-Y; Waite, J H; Wurz, P

2015-01-23

Comets contain the best-preserved material from the beginning of our planetary system. Their nuclei and comae composition reveal clues about physical and chemical conditions during the early solar system when comets formed. ROSINA (Rosetta Orbiter Spectrometer for Ion and Neutral Analysis) onboard the Rosetta spacecraft has measured the coma composition of comet 67P/Churyumov-Gerasimenko with well-sampled time resolution per rotation. Measurements were made over many comet rotation periods and a wide range of latitudes. These measurements show large fluctuations in composition in a heterogeneous coma that has diurnal and possibly seasonal variations in the major outgassing species: water, carbon monoxide, and carbon dioxide. These results indicate a complex coma-nucleus relationship where seasonal variations may be driven by temperature differences just below the comet surface. Copyright © 2015, American Association for the Advancement of Science.

The Oxygen Isotopic Composition (18O/16O) in the Dust of Comet 67P/Churyumov-Gerasimenko Measured by COSIMA On-board Rosetta

NASA Astrophysics Data System (ADS)

Paquette, J. A.; Engrand, C.; Hilchenbach, M.; Fray, N.; Stenzel, O. J.; Silen, J.; Rynö, J.; Kissel, J.

2018-03-01

The oxygen isotopic ratio 18O/16O has been measured in cometary gas for a wide variety of comets, but the only measurements in cometary dust were performed by the Stardust cometary sample return mission. Most such measurements find a value of the ratio that is consistent with Vienna Standard Mean Ocean Water (VSMOW) within errors. In this work we present the result of a measurement, using the COSIMA instrument on the Rosetta orbiter, of the oxygen isotopic ratio in dust from Comet 67P/Churyumov-Gerasimenko. Measuring the 18O/16O ratio with COSIMA is challenging for a number of reasons, but it is possible with a reasonable degree of precision. We find a result of 2.00 × 10-3 ± 1.2 × 10-4 which is consistent within errors with VSMOW.

Computational design of a red fluorophore ligase for site-specific protein labeling in living cells

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Daniel S.; Nivon, Lucas G.; Richter, Florian

In this study, chemical fluorophores offer tremendous size and photophysical advantages over fluorescent proteins but are much more challenging to target to specific cellular proteins. Here, we used Rosetta-based computation to design a fluorophore ligase that accepts the red dye resorufin, starting from Escherichia coli lipoic acid ligase. X-ray crystallography showed that the design closely matched the experimental structure. Resorufin ligase catalyzed the site-specific and covalent attachment of resorufin to various cellular proteins genetically fused to a 13-aa recognition peptide in multiple mammalian cell lines and in primary cultured neurons. We used resorufin ligase to perform superresolution imaging of themore » intermediate filament protein vimentin by stimulated emission depletion and electron microscopies. This work illustrates the power of Rosetta for major redesign of enzyme specificity and introduces a tool for minimally invasive, highly specific imaging of cellular proteins by both conventional and superresolution microscopies.« less

Four-fluid MHD Simulations of the Plasma and Neutral Gas Environment of Comet Churyumov-Gerasimenko Near Perihelion

NASA Astrophysics Data System (ADS)

Huang, Z.; Toth, G.; Gombosi, T.; Jia, X.; Rubin, M.; Fougere, N.; Tenishev, V.; Combi, M.; Bieler, A.; Hansen, K.; Shou, Y.; Altwegg, K.

2015-10-01

We develop a 3-D four fluid model to study the plasma environment of comet Churyumov- Gerasimenko (CG), which is the target of the Rosetta mission. Our model is based on BATS-R-US within the SWMF (Space Weather Modeling Framework) that solves the governing multifluid MHD equations and and the Euler equations for the neutral gas fluid. These equations describe the behavior and interactions of the cometary heavy ions, the solar wind protons, the electrons, and the neutrals. This model incorporates mass loading processes, including photo and electron impact ionization, furthermore taken into account are charge exchange, dissociative ion-electron recombination, as well as collisional interactions between different fluids. We simulate the near nucleus plasma and neutral gas environment with a realistic shape model of CG near perihelion and compare our simulation results with Rosetta observations.

Computational design of a red fluorophore ligase for site-specific protein labeling in living cells

DOE PAGES

Liu, Daniel S.; Nivon, Lucas G.; Richter, Florian; ...

2014-10-13

In this study, chemical fluorophores offer tremendous size and photophysical advantages over fluorescent proteins but are much more challenging to target to specific cellular proteins. Here, we used Rosetta-based computation to design a fluorophore ligase that accepts the red dye resorufin, starting from Escherichia coli lipoic acid ligase. X-ray crystallography showed that the design closely matched the experimental structure. Resorufin ligase catalyzed the site-specific and covalent attachment of resorufin to various cellular proteins genetically fused to a 13-aa recognition peptide in multiple mammalian cell lines and in primary cultured neurons. We used resorufin ligase to perform superresolution imaging of themore » intermediate filament protein vimentin by stimulated emission depletion and electron microscopies. This work illustrates the power of Rosetta for major redesign of enzyme specificity and introduces a tool for minimally invasive, highly specific imaging of cellular proteins by both conventional and superresolution microscopies.« less

A model for the solution structure of the rod arrestin tetramer.

PubMed

Hanson, Susan M; Dawson, Eric S; Francis, Derek J; Van Eps, Ned; Klug, Candice S; Hubbell, Wayne L; Meiler, Jens; Gurevich, Vsevolod V

2008-06-01

Visual rod arrestin has the ability to self-associate at physiological concentrations. We previously demonstrated that only monomeric arrestin can bind the receptor and that the arrestin tetramer in solution differs from that in the crystal. We employed the Rosetta docking software to generate molecular models of the physiologically relevant solution tetramer based on the monomeric arrestin crystal structure. The resulting models were filtered using the Rosetta energy function, experimental intersubunit distances measured with DEER spectroscopy, and intersubunit contact sites identified by mutagenesis and site-directed spin labeling. This resulted in a unique model for subsequent evaluation. The validity of the model is strongly supported by model-directed crosslinking and targeted mutagenesis that yields arrestin variants deficient in self-association. The structure of the solution tetramer explains its inability to bind rhodopsin and paves the way for experimental studies of the physiological role of rod arrestin self-association.

Gaining Confidence in Navigating Rosetta at Mars Swing-By

NASA Technical Reports Server (NTRS)

Crammn, Ruediger; Budnik, Frank

2007-01-01

The Mars swing-by in the early morning of the 25th of February 2007 was one of the most critical events the Rosetta mission has experienced so far on its way to the comet Churyumov-Gerasimenko. The closest approach took place at a distance of only 250 km from the planet s surface. Missing the optimal target would have translated into considerable fuel cost. In order to achieve confidence in operating through this highly critical mission phase, a navigation analysis exercise was carried out beforehand. This paper describes the purpose and the chosen approach for this preparatory Flight Dynamics activity. It presents and discusses results of the analysis. Emphasis is put on the question of what is needed to simulate a valuable data set representative for operations. The results of the navigation analysis are compared with real data obtained during swing-by operations.

Probing 67P/Churyumov-Gerasimenko's Electron Environment Through Ultraviolet Emission by Rosetta Alice Observations

NASA Astrophysics Data System (ADS)

Schindhelm, Eric; Noonan, John; Keeney, Brian A.; Broiles, Thomas; Bieler, Andre; A'Hearn, Michael F.; Bertaux, Jean-Loup; Feaga, Lori M.; Feldman, Paul D.; Parker, Joel Wm.; Steffl, Andrew Joseph; Stern, S. Alan; Weaver, Harold A.

2016-10-01

The Alice Far-Ultraviolet (FUV) Spectrograph onboard ESA's Rosetta spacecraft has observed the coma of comet 67P/Churyumov-Gerasimenko from far approach in summer 2014 until the end of mission in September 2016. We present an overall perspective of the bright FUV emission lines (HI 1026 Å, OI 1302/1305/1306 Å multiplet, OI] 1356 Å, CO 1510 (1-0) Å, and CI 1657 Å) above the sunward hemisphere, detailing their spatial extent and brightness as a function of time and the heliocentric distance of the comet. We compare our observed gas column densities derived using electron temperatures and densities from the Ion Electron Sensor (IES) with those derived using the Inner Coma Environment Simulator (ICES) models in periods when electron-impact excited emission dominates over solar fluorescence emission. The electron population is characterized with 2 three-dimensional kappa functions, one dense and warm, one rarefied and hot.

The oxygen isotopic composition (18O/16O) in the dust of comet 67P/Churyumov-Gerasimenko measured by COSIMA on-board Rosetta

NASA Astrophysics Data System (ADS)

Paquette, J. A.; Engrand, C.; Hilchenbach, M.; Fray, N.; Stenzel, O. J.; Silen, J.; Rynö, J.; Kissel, J.

2018-07-01

The oxygen isotopic ratio 18O/16O has been measured in cometary gas for a wide variety of comets, but the only measurements in cometary dust were performed by the Stardust cometary sample return mission. Most such measurements find a value of the ratio that is consistent with Vienna Standard Mean Ocean Water (VSMOW) within errors. In this work we present the result of a measurement, using the COSIMA (the COmetary Secondary Ion Mass Analyser) instrument on the Rosetta orbiter, of the oxygen isotopic ratio in dust from Comet 67P/Churyumov-Gerasimenko. Measuring the 18O/16O ratio with COSIMA is challenging for a number of reasons, but it is possible with a reasonable degree of precision. We find a result of 2.00 × 10-3 ± 1.2 × 10-4, which is consistent within errors with VSMOW.

The Rosetta phone: a hand-held device for automatic translation of signs in natural images

NASA Astrophysics Data System (ADS)

Jafri, Syed Ali Raza; Mikkilineni, Aravind K.; Boutin, Mireille; Delp, Edward J.

2008-02-01

When traveling in a region where the local language is not written using the Roman alphabet, translating written text (e.g., documents, road signs, or placards) is a particularly difficult problem since the text cannot be easily entered into a translation device or searched using a dictionary. To address this problem, we are developing the "Rosetta Phone," a handheld device (e.g., PDA or mobile telephone) capable of acquiring a picture of the text, identifying the text within the image, and producing both an audible and a visual English interpretation of the text. We started with English, as a developement language, for which we achieved close to 100% accuracy in identifying and reading text. We then modified the system to be able to read and translate words written using the Arabic character set. We currently achieve approximately 95% accuracy in reading words from a small directory of town names.

Cholecystectomy for Prevention of Recurrence after Endoscopic Clearance of Bile Duct Stones in Korea.

PubMed

Song, Myung Eun; Chung, Moon Jae; Lee, Dong Jun; Oh, Tak Geun; Park, Jeong Youp; Bang, Seungmin; Park, Seung Woo; Song, Si Young; Chung, Jae Bock

2016-01-01

Cholecystectomy in patients with an intact gallbladder after endoscopic removal of stones from the common bile duct (CBD) remains controversial. We conducted a case-control study to determine the risk of recurrent CBD stones and the benefit of cholecystectomy for prevention of recurrence after endoscopic removal of stones from the CBD in Korean patients. A total of 317 patients who underwent endoscopic CBD stone extraction between 2006 and 2012 were included. Possible risk factors for the recurrence of CBD stones including previous cholecystectomy history, bile duct diameter, stone size, number of stones, stone composition, and the presence of a periampullary diverticulum were analyzed. The mean duration of follow-up after CBD stone extraction was 25.4±22.0 months. A CBD diameter of 15 mm or larger [odds ratio (OR), 1.930; 95% confidence interval (CI), 1.098 to 3.391; p=0.022] and the presence of a periampullary diverticulum (OR, 1.859; 95% CI, 1.014 to 3.408; p=0.045) were independent predictive factors for CBD stone recurrence. Seventeen patients (26.6%) in the recurrence group underwent elective cholecystectomy soon after endoscopic extraction of CBD stones, compared to 88 (34.8%) in the non-recurrence group; the difference was not statistically significant (p=0.212). A CBD diameter of 15 mm or larger and the presence of a periampullary diverticulum were found to be potential predictive factors for recurrence after endoscopic extraction of CBD stones. Elective cholecystectomy after clearance of CBD stones did not reduce the incidence of recurrent CBD stones in Korean patients.

[Correlation between urinary stones and urinary tract infections].

PubMed

Chen, Peilin; Zhang, Liguo; Meng, Bin

2014-05-01

To explore the correlation of urinary stones and urinary tract infections. 300 cases with urinary tract stones received in our hospital from Feb. 2010 to Oct. 2013 were chosen as study samples. Urine routine index, situation of urine positivity and urinary tract infection after surgery were analyzed while, intraoperative cotton swabs were tested after being dipped in liquid near stones. Main components of stones in non-infected and infected stone group were analyzed and compared. Data on urolithiasis was collected. 96 infected stones were found in 300 patients, accounting for 32%, which including 35 cases of E. coli (36.5%), 28 cases of Staphylococcus epidermidis (29.2%), and 15 cases of Proteus mirabilis (15.6%). Numbers of urine abnormalities, urine positivities, positive intraoperative cotton swabs and urinary tract infections in patients in the group with infected stones, were significantly higher than in the group without infected stones and the differences were statistically significant (χ² = 8.203, 73.99, 178.9, 24.26, P < 0.05). The incidence rates of hexahydrate magnesium ammonium phosphate, carbonate apatite and hydroxyapatite stones in the group with infected stones were significantly higher than those in the non-infected-rock group while the incidence rates of calcium oxalate and uric acid stones were found significantly lower than those in the non-infected-stone group, with differences statistically significant (χ² = 167.6, 21.00, 8.586, 73.17, 48.79, P < 0.05). Bacteria could cause urinary tract stones, and infected stones were always associated with urinary tract infections. Bacteria detection in patients with urinary calculi was particularly important to avoid the urinary tract infections.

Nutritional Management of Kidney Stones (Nephrolithiasis)

PubMed Central

Segal, Adam M.; Seifter, Julian L.; Dwyer, Johanna T.

2015-01-01

The incidence of kidney stones is common in the United States and treatments for them are very costly. This review article provides information about epidemiology, mechanism, diagnosis, and pathophysiology of kidney stone formation, and methods for the evaluation of stone risks for new and follow-up patients. Adequate evaluation and management can prevent recurrence of stones. Kidney stone prevention should be individualized in both its medical and dietary management, keeping in mind the specific risks involved for each type of stones. Recognition of these risk factors and development of long-term management strategies for dealing with them are the most effective ways to prevent recurrence of kidney stones. PMID:26251832

Villamayor stone (Golden Stone) as a Global Heritage Stone Resource from Salamanca (NW of Spain)

NASA Astrophysics Data System (ADS)

Garcia-Talegon, Jacinta; Iñigo, Adolfo; Vicente-Tavera, Santiago

2013-04-01

Villamayor stone is an arkosic stone of Middle Eocene age and belongs to the Cabrerizos Sandstone Formation that comprising braided fluvial systems and paleosoils at the top of each stratigraphic sequence. The sandstone is known by several names: i) the Villamayor Stone because the quarries are located in Villamayor de Armuña village that are situated at 7 km to the North from Salamanca city; ii) the Golden Stone due to its patina that produced a ochreous/golden color on the façades of monuments of Salamanca (World Heritage City,1988) built in this Natural stone (one of the silicated rocks utilised). We present in this work, the Villamayor Stone to be candidate as Global Heritage Stone Resource. The Villamayor Stone were quarrying for the construction and ornamentation of Romanesque religious monuments as the Old Cathedral and San Julian church; Gothic (Spanish plateresc style) as the New Cathedral, San Esteban church and the sculpted façade of the Salamanca University, one of the oldest University in Europe (it had established in 1250); and this stone was one of the type of one of the most sumptuous Baroque monuments is the Main Square of the its galleries and arcades (1729). Also, this stone was used in building palaces, walls and reconstruction of Roman bridge. Currently, Villamayor Stone is being quarried by small and family companies, without a modernized processing, for cladding of the façades of the new buildings until that the construction sector was burst (in 2008 the international economic crisis). However, Villamayor Stone is the main stone material used in the city of Salamanca for the restoration of monuments and, even in small quantities when compared with just before the economic crisis, it would be of great importance for future generations protect their quarries and the craft of masonry. Villamayor Stone has several varieties from channels facies to floodplains facies, in this work the selected varieties are: i) the fine-grained stone, microporous, is partially cemented by dolomite, 27% (bulk porosity), ii) the ochre and fine-grained stone, microporous, with smectite, 30% (bulk porosity), iii) the medium-grained stone, 38% (bulk porosity). Main components for all three varieties: Quartz (up to 60%), feldspars, 2:1 layered silicates (smectites), palygorskite-type fibrous silicates, and small amounts of micaceous minerals (illite/mica).

Extensive characterizations of bacteria isolated from catheterized urine and stone matrices in patients with nephrolithiasis.

PubMed

Tavichakorntrakool, Ratree; Prasongwattana, Vitoon; Sungkeeree, Seksit; Saisud, Phitsamai; Sribenjalux, Pipat; Pimratana, Chaowat; Bovornpadungkitti, Sombat; Sriboonlue, Pote; Thongboonkerd, Visith

2012-11-01

Urinary tract infections are generally known to be associated with nephrolithiasis, particularly struvite stone, in which the most common microbe found is urea-splitting bacterium, i.e. Proteus mirabilis. However, our observation indicated that it might not be the case of stone formers in Thailand. We therefore extensively characterized microorganisms associated with all types of kidney stones. A total of 100 kidney stone formers (59 males and 41 females) admitted for elective percutaneous nephrolithotomy were recruited and microorganisms isolated from catheterized urine and cortex and nidus of their stones were analyzed. From 100 stone formers recruited, 36 cases had a total of 45 bacterial isolates cultivated from their catheterized urine and/or stone matrices. Among these 36 cases, chemical analysis by Fourier-transformed infrared spectroscopy revealed that 8 had the previously classified 'infection-induced stones', whereas the other 28 cases had the previously classified 'metabolic stones'. Calcium oxalate (in either pure or mixed form) was the most common and found in 64 and 75% of the stone formers with and without bacterial isolates, respectively. Escherichia coli was the most common bacterium (approximately one-third of all bacterial isolates) found in urine and stone matrices (both nidus and periphery). Linear regression analysis showed significant correlation (r = 0.860, P < 0.001) between bacterial types in urine and stone matrices. Multidrug resistance was frequently found in these isolated bacteria. Moreover, urea test revealed that only 31% were urea-splitting bacteria, whereas the majority (69%) had negative urea test. Our data indicate that microorganisms are associated with almost all chemical types of kidney stones and urea-splitting bacteria are not the major causative microorganisms found in urine and stone matrices of the stone formers in Thailand. These data may lead to rethinking and a new roadmap for future research regarding the role of microorganisms in kidney stone formation.

Contribution of stone size to chronic kidney disease in kidney stone formers.

PubMed

Ahmadi, Farrokhlagha; Etemadi, Samira Motedayen; Lessan-Pezeshki, Mahbob; Mahdavi-Mazdeh, Mitra; Ayati, Mohsen; Mir, Alireza; Yazdi, Hadi Rokni

2015-01-01

To determine whether stone burden correlates with the degree of chronic kidney disease in kidney stone formers. A total of 97 extracorporeal shockwave lithotripsy candidates aged 18 years and older were included. Size, number and location of the kidney stones, along with cumulative stone size, defined as the sum of diameters of all stones) were determined. Estimated glomerular filtration rate was determined using the Chronic Kidney Disease Epidemiology Collaboration cystatin C/creatinine equation, and chronic kidney disease was defined as estimated glomerular filtration rate <60 mL/min/1.73 m(2). In individuals with cumulative stone size <20 mm, estimated glomerular filtration rate significantly decreased when moving from the first (estimated glomerular filtration rate 75.5 ± 17.8 mL/min/1.73 m(2)) to the fourth (estimated glomerular filtration rate 56.4 ± 20.44 mL/min/1.73 m(2) ) quartile (P = 0.004). When patients with a cumulative stone size ≥ 20 mm were included, the observed association was rendered non-significant. In individuals with a cumulative stone size < 20 mm, each 1-mm increase in cumulative stone size was associated with a 20% increased risk of having chronic kidney disease. The relationship persisted even after adjustment for age, sex, body mass index, C-reactive protein, fasting plasma glucose, thyroid stimulating hormone, presence of microalbuminuria, history of renal calculi, history of extracorporeal shockwave lithotripsy, number and location of the stones (odds ratio 1.24, 95% confidence interval 1.02-1.52). The same was not observed for individuals with a cumulative stone size ≥ 20 mm. In kidney stone formers with a cumulative stone size up to 20 mm, estimated glomerular filtration rate linearly declines with increasing cumulative stone size. Additionally, cumulative stone size is an independent predictor of chronic kidney disease in this group of patients. © 2014 The Japanese Urological Association.

Risk of Hypertension among First-Time Symptomatic Kidney Stone Formers

PubMed Central

Kittanamongkolchai, Wonngarm; Mara, Kristin C.; Mehta, Ramila A.; Vaughan, Lisa E.; Denic, Aleksandar; Knoedler, John J.; Enders, Felicity T.; Lieske, John C.

2017-01-01

Background and objectives Prior work has suggested a higher risk of hypertension in kidney stone formers but lacked disease validation and adjustment for potential confounders. Certain types of stone formers may also be at higher risk of hypertension. Design, setting, participants, & measurements In our study, incident symptomatic stone formers in Olmsted County from 2000 to 2011 were manually validated by chart review and age and sex matched to Olmsted County controls. We followed up patients through November 20, 2015. Hypertension was also validated by manual chart review, and the risk of hypertension in stone formers compared with controls was assessed both univariately and after adjusting for comorbidities. The risk of hypertension among different subtypes of stone formers was also evaluated. Results Among 3023 coded stone formers from 2000 to 2011, a total of 1515 were validated and matched to 1515 controls (mean age was 45 years old, and 56% were men). After excluding those with baseline hypertension (20% of stone formers and 18% of controls), 154 stone formers and 110 controls developed hypertension. Median follow-up time was 7.8 years in stone formers and 9.6 years in controls. Stone formers were found to have a higher risk of hypertension compared with controls (hazard ratio, 1.50; 95% confidence interval, 1.18 to 1.92), even after adjusting for age, sex, body mass index, serum creatinine, CKD, diabetes, gout, coronary artery disease, dyslipidemia, tobacco use, and alcohol abuse (hazard ratio, 1.58; 95% confidence interval, 1.12 to 2.21). Results were similar after excluding patients who were ever on a thiazide diuretic (hazard ratio, 1.65; 95% confidence interval, 1.16 to 2.38). Stone composition, radiographic stone burden, number of subsequent stone events, and stone removal surgeries were not associated with hypertension (P>0.05 for all). Conclusions The risk of hypertension was higher after the first symptomatic kidney stone event. However, kidney stone severity, type, and treatment did not associate with hypertension. PMID:28148559

Has the pelvic renal stone position inside the upper loop of JJ stent any influence on the extracorporeal shock wave lithotripsy results?

PubMed

Pricop, Catalin; Serban, Dragomir N; Serban, Ionela Lacramioara; Cumpanas, Alin-Adrian; Gingu, Constantin-Virgil

2016-01-01

JJ stents are often encountered in patients with pelvic renal stones referred for shock wave lithotripsy, most of them being placed either for obstructive renal pelvic stones or for ureteric stones mobilized retrograde during the JJ stent insertion. The aim of the study was to determine whether the relative stone position in the upper loop of the JJ stent during extracorporeal shock wave lithotripsy (SWL) influences the efficiency of the procedure. The study was designed as a prospective cohort study on 162 patients addressing the same urological department, with single renal pelvic stone (primary or mobilized to the renal pelvis during the insertion of JJ stent), smaller than 15 mm, with JJ stent, treated by SWL using a second generation spark gap lithotripter, 18 kV, 3000 waves/session. Patients were divided in three groups according to the relative position of the stone to the upper loop of the JJ stent as appears on plain X-ray: stone-inside-loop, loop-crossing-stone and stone-outside the loop. The SWL success rate was the primary outcome of the study. p Value, Chi square and Kruskal-Wallis tests were used for statistical analysis. For stone-inside-loop cases, SWL efficiency was 22.7 versus 42 % for all the other cases (p = 0.002). Other factors for decreased SWL success rate were: higher stone radio-opacity, larger JJ of stent and obese patients. Study limitation is represented by the relative small study group and by the evaluation of stone density using plain X-ray instead of computer tomography. For pelvic renal stones having the same density characteristics studied by plain X-ray, the SWL efficiency is lower in stone-inside-loop cases comparing with the other positions. The overall stone free rate for renal pelvic stones could be explained by the second generation lithotripter used for all procedures.

Wanted: suitable replacement stones for the Lede stone (Belgium)

NASA Astrophysics Data System (ADS)

De Kock, T.; Dewanckele, J.; Boone, M. A.; De Boever, W.; De Schutter, G.; Jacobs, P.; Cnudde, V.

2012-04-01

The Lede stone is an arenaceous limestone with a Lutetian age, occurring as discrete (most of the times three) stone banks in the marine sandy sediments of the Lede Formation (Belgium). It has a quartz content of approximate 40%. This increases abrasion strength and together with the cementation results in an average compressive strength of about 80-85 MPa. The cement is a microsparitic calcite cement. Other carbonate particles are both microfossils (mainly foraminifers) and macrofossils (bivalves, serpulids, echinoderms, …). This great diversity gives the stone a heterogeneous, animated appearance. The intra- and interparticle porosity is in total 5-10 % in average and the apparent density is 2400-2550 kg/m3. Another important constituent is glauconite, present in a few percent. In fresh state, the stone has a greenish-grey colour, but when it is exposed to atmospheric conditions for a couple of years, the stone acquires a yellowish to rust-coloured patina due to the weathering of glauconite. Sulphatation causes severe damage to the stone, and black gypsum crusts are common in urban environments on stones protected from runoff. This stone was excavated in both open air and underground quarries in the areas of Brussels and Ghent. The proximity of main rivers such as the Scheldt and Zenne provided transport routes for export towards the north (e.g. Antwerp and The Netherlands). Its first known use dates back to Roman times but the stone flourished in Gothic architecture due to its easy workability and its 'divine' light coloured patina. This results nowadays in a dominant occurrence in the cultural heritage of northwestern Belgium and the south of The Netherlands. Socio-economical reasons caused several declines and revivals of Lede stone in use. In the beginning of the 20th century, only a few excavation sites remained, with as main quarry the one located at Bambrugge (Belgium). By the end of the first half of the 20th century, however, no quarry sites remained. In the sixties, a sand quarry located in Balegem (Belgium) started with the extraction of Lede stone combined with its other activities. Until now, only this site supplies blocks of fresh Lede stones and it doesn't seem there will rise an opportunity of a new site in the near future. Therefore, during the huge amount of renovation works in the past century, the Lede stone was often replaced by imported (mostly French) limestones such as Massangis stone, Savonnières stone and Euville stone. The commercial value seems to have had a large impact and too little attention was paid on the optical appearance, ageing and technical compatibility of the stones. The use of especially Massangis stone was taken for granted. In the 21st century, there is a growing awareness of the impact of such consequent replacement for the historical value of our cultural heritage and several alternative stones are suggested and even used. These include stones from France, Spain and Portugal, but also from other regions in Belgium. For the moment, there is no consensus on the most appropriate replacement stone and further research should be done in order to evaluate compatibility of the different stone types with Lede stone. In this context, it is also very important to actively search for better alternatives, which resemble the Lede stone in both a mechanical and aesthetical point of view. Therefore, this abstract is an open question to its readers. Any commercial natural stone suggestions with affiliation to the aforementioned properties are welcome by e-mailing the corresponding author.

Supernova 1987A Interpreted through the SLIP Pulsar Model

NASA Astrophysics Data System (ADS)

Middleditch, John

2010-01-01

The model of pulsar emission through superluminally induced polarization currents (SLIP) predicts that pulsations produced by such currents, induced by a rotating, magnetized body at many light cylinder radii, as would be the case for a neutron star born within any star of >1.5 solar masses, will drive pulsations close to the axis of rotation. Such highly collimated pulsations (<= 1 in 10,000), and the similarly collimated jets of particles which it drove, including 1e-6 solar masses with velocities of up to 0.95 c, were responsible for the features of its very early light curve (days 3 - 20), the "Mystery Spot," observed slightly later (days 30 - 50 and >), and later, in less collimated form, the bipolarity of SN 1987A itself. The pulsations and jet interacted with circumstellar material (CM), to produce features observed in the very early light curve which correspond to: 1) the entry of the pulsed beam into the CM; 2) the entry of the 0.95 c particles into the CM; 3) the exit of the pulsed beam from the CM (with contributions in the B and I bands -- the same as later inferred/observed for its 2.14 ms pulsations); and 4) the exit of the fastest particles from the CM. Because of the energy requirements of the jet in these early stages, the spindown required of its pulsar could exceed 1e-5 Hz/s at a rotation rate of 500 Hz. There is no reason to suggest that this mechanism is not universally applicable to all SNe with gaseous remnants remaining, and thus SN 1987A is the Rosetta Stone for 99% of SNe, gamma-ray bursts, and millisecond pulsars. This work was supported in part by the Department of Energy through the Los Alamos Directed Research Grant DR20080085.

Predicting a double mutant in the twilight zone of low homology modeling for the skeletal muscle voltage-gated sodium channel subunit beta-1 (Nav1.4 β1).

PubMed

Scior, Thomas; Paiz-Candia, Bertin; Islas, Ángel A; Sánchez-Solano, Alfredo; Millan-Perez Peña, Lourdes; Mancilla-Simbro, Claudia; Salinas-Stefanon, Eduardo M

2015-01-01

The molecular structure modeling of the β1 subunit of the skeletal muscle voltage-gated sodium channel (Nav1.4) was carried out in the twilight zone of very low homology. Structural significance can per se be confounded with random sequence similarities. Hence, we combined (i) not automated computational modeling of weakly homologous 3D templates, some with interfaces to analogous structures to the pore-bearing Nav1.4 α subunit with (ii) site-directed mutagenesis (SDM), as well as (iii) electrophysiological experiments to study the structure and function of the β1 subunit. Despite the distant phylogenic relationships, we found a 3D-template to identify two adjacent amino acids leading to the long-awaited loss of function (inactivation) of Nav1.4 channels. This mutant type (T109A, N110A, herein called TANA) was expressed and tested on cells of hamster ovary (CHO). The present electrophysiological results showed that the double alanine substitution TANA disrupted channel inactivation as if the β1 subunit would not be in complex with the α subunit. Exhaustive and unbiased sampling of "all β proteins" (Ig-like, Ig) resulted in a plethora of 3D templates which were compared to the target secondary structure prediction. The location of TANA was made possible thanks to another "all β protein" structure in complex with an irreversible bound protein as well as a reversible protein-protein interface (our "Rosetta Stone" effect). This finding coincides with our electrophysiological data (disrupted β1-like voltage dependence) and it is safe to utter that the Nav1.4 α/β1 interface is likely to be of reversible nature.