Translations on Eastern Europe Scientific Affairs No. 530

DTIC Science & Technology

1976-11-24

candidate of medical sciences, on the basis of his disserta- tion entitled "Glucose Metabolism and Insulin Uptake of Isolated Human Adi- pose Cells" 11...34; Istvan Fodor, candidate of geographical sciences, on the basis of his dis- sertation entitled "Climatological and Bioclimatological Features of the... Human Uterus" Tran Quy Tien, candidate of mathematical sciences, on the basis of his dis- sertation entitled "Investigations in the Field of Rees-Type

CAM and Hepatitis C: A Focus on Herbal Supplements

MedlinePlus

... health/clinicaltrials/ Key References Dhiman RK, Chawla YK. Herbal medicines for liver diseases . Digestive Diseases and Sciences . 2005; ... double-blind, placebo-controlled trial. Annals of Internal Medicine ... TM, Szabo G, et al. Herbal product use by persons enrolled in the Hepatitis ...

76 FR 17160 - Notice of Finding of No Significant Antitrust Changes and Time for Filing Requests for...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-28

... Time for Filing Requests for Reevaluation. FOR FURTHER INFORMATION CONTACT: Aaron Szabo, Financial Analyst, Financial Analysis and International Projects Branch, Division of Policy and Rulemaking, Office... Analysis and Recommendation In reaching this conclusion, the NRC staff considered the structure of the...

2012 right-of-way fatality & trespass prevention workshop

DOT National Transportation Integrated Search

2013-04-30

Based on the success of the 2008 Trespasser Workshop, FRA and FTA sponsored this follow-on workshop. The keynote speech by FRA Administrator, Mr. Joseph C. Szabo, was followed by 23 technical presentations in the areas of Pedestrian Safety, Hazard Ma...

Rotational dynamics of benzene and water in an ionic liquid explored via molecular dynamics simulations and NMR T1 measurements.

PubMed

Yasaka, Yoshiro; Klein, Michael L; Nakahara, Masaru; Matubayasi, Nobuyuki

2012-02-21

The rotational dynamics of benzene and water in the ionic liquid (IL) 1-butyl-3-methylimidazolium chloride are studied using molecular dynamics (MD) simulation and NMR T(1) measurements. MD trajectories based on an effective potential are used to calculate the (2)H NMR relaxation time, T(1) via Fourier transform of the relevant rotational time correlation function, C(2R)(t). To compensate for the lack of polarization in the standard fixed-charge modeling of the IL, an effective ionic charge, which is smaller than the elementary charge is employed. The simulation results are in closest agreement with NMR experiments with respect to the temperature and Larmor frequency dependencies of T(1) when an effective charge of ±0.5e is used for the anion and the cation, respectively. The computed C(2R)(t) of both solutes shows a bi-modal nature, comprised of an initial non-diffusive ps relaxation plus a long-time ns tail extending to the diffusive regime. Due to the latter component, the solute dynamics is not under the motional narrowing condition with respect to the prevalent Larmor frequency. It is shown that the diffusive tail of the C(2R)(t) is most important to understand frequency and temperature dependencies of T(1) in ILs. On the other hand, the effect of the initial ps relaxation is an increase of T(1) by a constant factor. This is equivalent to an "effective" reduction of the quadrupolar coupling constant (QCC). Thus, in the NMR T(1) analysis, the rotational time correlation function can be modeled analytically in the form of aexp (-t/τ) (Lipari-Szabo model), where the constant a, the Lipari-Szabo factor, contains the integrated contribution of the short-time relaxation and τ represents the relaxation time of the exponential (diffusive) tail. The Debye model is a special case of the Lipari-Szabo model with a = 1, and turns out to be inappropriate to represent benzene and water dynamics in ILs since a is as small as 0.1. The use of the Debye model would result in

Rotational dynamics of benzene and water in an ionic liquid explored via molecular dynamics simulations and NMR T1 measurements

NASA Astrophysics Data System (ADS)

Yasaka, Yoshiro; Klein, Michael L.; Nakahara, Masaru; Matubayasi, Nobuyuki

2012-02-01

The rotational dynamics of benzene and water in the ionic liquid (IL) 1-butyl-3-methylimidazolium chloride are studied using molecular dynamics (MD) simulation and NMR T1 measurements. MD trajectories based on an effective potential are used to calculate the 2H NMR relaxation time, T1 via Fourier transform of the relevant rotational time correlation function, C2R(t). To compensate for the lack of polarization in the standard fixed-charge modeling of the IL, an effective ionic charge, which is smaller than the elementary charge is employed. The simulation results are in closest agreement with NMR experiments with respect to the temperature and Larmor frequency dependencies of T1 when an effective charge of ±0.5e is used for the anion and the cation, respectively. The computed C2R(t) of both solutes shows a bi-modal nature, comprised of an initial non-diffusive ps relaxation plus a long-time ns tail extending to the diffusive regime. Due to the latter component, the solute dynamics is not under the motional narrowing condition with respect to the prevalent Larmor frequency. It is shown that the diffusive tail of the C2R(t) is most important to understand frequency and temperature dependencies of T1 in ILs. On the other hand, the effect of the initial ps relaxation is an increase of T1 by a constant factor. This is equivalent to an "effective" reduction of the quadrupolar coupling constant (QCC). Thus, in the NMR T1 analysis, the rotational time correlation function can be modeled analytically in the form of aexp (-t/τ) (Lipari-Szabo model), where the constant a, the Lipari-Szabo factor, contains the integrated contribution of the short-time relaxation and τ represents the relaxation time of the exponential (diffusive) tail. The Debye model is a special case of the Lipari-Szabo model with a = 1, and turns out to be inappropriate to represent benzene and water dynamics in ILs since a is as small as 0.1. The use of the Debye model would result in an underestimation

Thursday's Agenda | Division of Cancer Prevention

Cancer.gov

TimeAgenda8:30 am - 8:50 amRegistration - Networking8:50 am - 8:55 amWelcome and Opening RemarksLeslie Ford, MDAssociate Director for Clinical ResearchDivision of Cancer Prevention, NCIEva Szabo, MD Chief, Lung and Upper Aerodigestive Cancer Research Group |

An Investigation of the Impact of Participation in Interscholastic Athletics on the STEM Achievement of Secondary-Level Underrepresented Students

ERIC Educational Resources Information Center

Dormer, Dina L.

2017-01-01

Physical activity stimulates the nervous system and subsequently increases cognition, neural functioning, and information processing in the human brain (Colcombe, Kramer, Erickson, Scalf, & McAuley, 2004; Erickson, Voss, Prakash, Basak, & Szabo, 2011). Students who include athletic pursuits in their daily schedules tend to perform better…

The p-Version of the Finite Element Method for Domains with Corners and for Infinite Domains

DTIC Science & Technology

1988-11-01

Finite Element Method, Prenticw-Hall, 1973. [24] Szabo, B. A. :PROBE : The Theoretical Manual(Release 1.0), Noetic Tech. Cor. St Louis, MO., 1985...National Bureau of Standards. " To be an international center of study and research for foreign students in numerical mathematics who are supported by

Sustainable Construction in Afghanistan

DTIC Science & Technology

2010-09-01

structures. 114 Conrad Schetter, “Ethnoscapes, National Territorialisation , and the Afghan War...Ethnoscapes, National Territorialisation , and the Afghan War,” 63. 117 Szabo, Barfield, and Sekler, Afghanistan: An Atlas of Indigenous Domestic...2004. Schetter, Conrad. “Ethnoscapes, National Territorialisation , and the Afghan War.” Geopolitics 10, no. 1 (2005): 64. Schwartz, Moshe

Identification, Characterization, and Clinical Development of the New Generation of Breast Cancer Susceptibility Alleles

DTIC Science & Technology

2006-03-01

CHEK2 * 1100delC families to determine whether they modify or interact with these genes in breast cancer. This task has not been started as yet...Szabo C, Devilee P, Goldgar D, Futreal PA, Nathanson K, Weber B, Rahman N, Stratton MR. Low-penetrance susceptibility to breast cancer due to CHEK2

THE FUNDAMENTAL SOLUTIONS FOR MULTI-TERM MODIFIED POWER LAW WAVE EQUATIONS IN A FINITE DOMAIN.

PubMed

Jiang, H; Liu, F; Meerschaert, M M; McGough, R J

2013-01-01

Fractional partial differential equations with more than one fractional derivative term in time, such as the Szabo wave equation, or the power law wave equation, describe important physical phenomena. However, studies of these multi-term time-space or time fractional wave equations are still under development. In this paper, multi-term modified power law wave equations in a finite domain are considered. The multi-term time fractional derivatives are defined in the Caputo sense, whose orders belong to the intervals (1, 2], [2, 3), [2, 4) or (0, n ) ( n > 2), respectively. Analytical solutions of the multi-term modified power law wave equations are derived. These new techniques are based on Luchko's Theorem, a spectral representation of the Laplacian operator, a method of separating variables and fractional derivative techniques. Then these general methods are applied to the special cases of the Szabo wave equation and the power law wave equation. These methods and techniques can also be extended to other kinds of the multi-term time-space fractional models including fractional Laplacian.

Friday's Agenda | Division of Cancer Prevention

Cancer.gov

TimeAgenda8:00 am - 8:10 amWelcome and Opening RemarksLeslie Ford, MDAssociate Director for Clinical ResearchDivision of Cancer Prevention, NCIEva Szabo, MD Chief, Lung and Upper Aerodigestive Cancer Research GroupDivision of Cancer Prevention, NCI8:10 am - 8:40 amClinical Trials Statistical Concepts for Non-StatisticiansKevin Dodd, PhD |

Cover art complementing article: "secondary metabolites from entomopathogenic Hypocrealean fungi" by Istvan Molnar

USDA-ARS?s Scientific Manuscript database

This contribution is a set of three images of entomopathogenic fungi that were taken and composited by RA Humber from individual specimens. Each of these images is a montage of many individual planes of focus integrated by software and then adjusted for realistic color, to further sharpen the images...

Translations on Eastern Europe, Scientific Affairs, Number 567

DTIC Science & Technology

1977-12-16

becomes effective on the day of its promulgation. [signed by] Ferenc Marta general secretary 2542 CSO: 2502 11 HUNGARY ACADEMY ESTABLISHES...doctor of medical sciences, Dezso Schüler, doctor of medical sciences, Gabor Szabo , academician, Jozsef Szegi, doctor of agricultural sciences, Pal...were: Marta Dery, doctor of technical sciences, L. Gyprgy Nagy and Sandor Rohrsetzer, doctors of chemical sciences. II. The Committee of

JPRS Report, East Europe

DTIC Science & Technology

1990-11-29

subject of parliamentary debate. At that time there was serious talk about recognizing the Jewry as a minority. And another reminder: The Lauder Javne...assimilating group will protest in vain, because judging by the statement and instant success of the Lauder Javne school there indeed exists a Jewry in...Szabo] Money , money , money . [Verebelyi] I know, everyone would want to milk the Treasury. Of course, central aid is also needed, but we have much

Human Factors Research in Aircrew Performance and Training

DTIC Science & Technology

1986-11-01

at Fort Devens , Massachusetts. During the evaluation, the project director observed the techniques used by the team members to assess specific...Szabo, Editors Anacapa Sciences, Inc. for ARI Field Unit at Fort Rucker, Alabama Charles A. Gainer, Chief 4-. TRAINING RESEARCH LABORATORY Jack H...DATE ARI Field Unit at Fort Rucker, Alabama November 1986 P.O. Box 489; Fort Rucker, AL 36362 22. NUMBEROrPAGES 2,2 14. MONITORING AGENCY NAME & ADDRESS

Analysis of the Performance of Mixed Finite Element Methods

DTIC Science & Technology

1988-11-28

with constant h is used and p is increased for accuracy. The h-p version combines the two approaches. We have studied varioius theoretical and...program PROBE IA101, developed by Noetic Tech, St. Louis [with a first release in 1985 and a second one in 19861. This program implements these versions...Vol. 606, Springer-Verlag, Berlin, 1977. A 10. B. A. Szabo, PROBE: Theoretical Manual, NOETIC Technologies, St. Louis, 1985. 4. Chronological list of

Battle Analysis: The Saar River Crossing

DTIC Science & Technology

1984-05-22

RAYMOND rlAJGR it»* *URT VANDERCLUTE MAJOR THOMAS WILSON CAPTAIN ROBERT MILLER CAPTAIN MAMA TRAORE (MALI) FOFT LEn^ENWORTH...turned over to Major Paul W. Marshall, of the 3!9th Engineers, who, in turn, received assistance from Major John N. Smith, Captain Thomas J. Mclntyre...possibility of the 11th PZ being released to secure Metz for a spring offensive. U*> The crossing of the 5e*r itself suceeded in diverting e*f*a#n r*s

Translatoins on Eastern Europe Political, Sociological, and Military Affairs No. 1556

DTIC Science & Technology

1978-06-30

Hejdanek and Marta Kubisova: "Statement of Charter 77 of 6 January 1978"] [Text] It has been a year since 241 citizens appealed to the constitutional...8217 initiative. Signed: Professor Dr Jiri Hajek, Spokesman of Charter 77 Dr Ladislav Hejdanek, Spokesman of Charter 77 Marta Kubisova, Spokesman of Charter 77...Sudi, party secre- tary of the Petofi Producer Cooperative in Janoshalom, by Borbala Szabo , a member of the Central Committee of the MSZMP and a

Synthetic Lectins: New Tools for Detection and Management of Prostate Cancer

DTIC Science & Technology

2014-08-01

diagnostic. AIM 1 describes a library based approach for the discovery of SLs targeting CAGs. AIM 2 describes biochemical and biophysical...Obianyo for their help with fluorescence polarization. This work was supported by funds provided from NIH COBRE grant P20RR17698.Notes and references...1 D. H. Dube and C. R. Bertozzi, Nat. Rev. Drug Discovery , 2005, 4, 477–488. 2 V. Harmat and G. Naray-Szabo, Croat. Chim. Acta, 2009, 82, 277– 282. 3

78 FR 61949 - Order Relating to Afshin (“Sean”) Naghibi

Federal Register 2010, 2011, 2012, 2013, 2014

2013-10-08

... the conspiracy was to bring about the export of ultrasound equipment and related accessories, items... Raytec SA (``Raytec''), to ship ultrasound units for UMI to Taban Saar in Iran for a small commission... them with the following text. `The coppers bvba [sic] sell all ultrasound machines to the belgium [sic...

Temperature dependence of fast carbonyl backbone dynamics in chicken villin headpiece subdomain

PubMed Central

Vugmeyster, Liliya; Ostrovsky, Dmitry

2012-01-01

Temperature-dependence of protein dynamics can provide information on details of the free energy landscape by probing the characteristics of the potential responsible for the fluctuations. We have investigated the temperature-dependence of picosecond to nanosecond backbone dynamics at carbonyl carbon sites in chicken villin headpiece subdomain protein using a combination of three NMR relaxation rates: 13C′ longitudinal rate, and two cross-correlated rates involving dipolar and chemical shift anisotropy (CSA) relaxation mechanisms, 13C′/13C′−13Cα CSA/dipolar and 13C′/13C′−15N CSA/dipolar. Order parameters have been extracted using the Lipari-Szabo model-free approach assuming a separation of the time scales of internal and molecular motions in the 2–16°C temperature range. There is a gradual deviation from this assumption from lower to higher temperatures, such that above 16°C the separation of the time scales is inconsistent with the experimental data and, thus, the Lipari-Szabo formalism can not be applied. While there are variations among the residues, on the average the order parameters indicate a markedly steeper temperature dependence at backbone carbonyl carbons compared to that probed at amide nitrogens in an earlier study. This strongly advocates for probing sites other than amide nitrogen for accurate characterization of the potential and other thermodynamics characteristics of protein backbone. PMID:21416162

Decorated Heegaard Diagrams and Combinatorial Heegaard Floer Homology

NASA Astrophysics Data System (ADS)

Hammarsten, Carl

Heegaard Floer homology is a collection of invariants for closed oriented three-manifolds, introduced by Ozsvath and Szabo in 2001. The simplest version is defined as the homology of a chain complex coming from a Heegaard diagram of the three manifold. In the original definition, the differentials count the number of points in certain moduli spaces of holomorphic disks, which are hard to compute in general. More recently, Sarkar and Wang (2006) and Ozsvath, Stipsicz and Szabo, (2009) have determined combinatorial methods for computing this homology with Z2 coefficients. Both methods rely on the construction of very specific Heegaard diagrams for the manifold, which are generally very complicated. Given a decorated Heegaard diagram H for a closed oriented 3-manifold Y, that is a Heegaard diagram together with a collection of embedded paths satisfying certain criteria, we describe a combinatorial recipe for a chain complex CF'[special character omitted]( H). If H satisfies some technical constraints we show that this chain complex is homotopically equivalent to the Heegaard Floer chain complex CF[special character omitted](H) and hence has the Heegaard Floer homology HF[special character omitted](Y) as its homology groups. Using branched spines we give an algorithm to construct a decorated Heegaard diagram which satisfies the necessary technical constraints for every closed oriented Y. We present this diagram graphically in the form of a strip diagram.

USSR and Eastern Europe Scientific Abstracts Biomedical and Behavioral Sciences No. 57

DTIC Science & Technology

1976-11-23

water. A total of 561 heifers, 192 cows , 34 foals and 1700 sheep were involved in the study. The results showed a weight gain and an absence of...there was a 50-66% re- duction of pathogenic organisms causing mastitis . The hygienic state of the 1/2 HUNGARY SZABO, J., VERMES, L., DUNKA, B...MAGYAR ALLATORVOSOK LAPJA Vol 32, No 8, Aug 71 pp 496-501 milk was about the same as of cows kept in stalls. A higher bacterial con- tamination was

Synthetic Lectins: New Tools for Detection and Management of Prostate Cancer

DTIC Science & Technology

2015-08-01

development of a prostate cancer diagnostic. AIM 1 describes a library based approach for the discovery of SLs targeting CAGs. AIM 2 describes biochemical...help with fluorescence polarization. This work was supported by funds provided from NIH COBRE grant P20RR17698.Notes and references 1 D. H. Dube and C...R. Bertozzi, Nat. Rev. Drug Discovery , 2005, 4, 477–488. 2 V. Harmat and G. Naray-Szabo, Croat. Chim. Acta, 2009, 82, 277– 282. 3 J. J. Lavigne and

Synthetic Lectins: New Tools for Detection and Management of Prostate Cancer

DTIC Science & Technology

2013-08-01

providing a new paradigm for the development of a prostate cancer diagnostic. AIM 1 describes a library based approach for the discovery of SLs...This work was supported by funds provided from NIH COBRE grant P20RR17698.Notes and references 1 D. H. Dube and C. R. Bertozzi, Nat. Rev. Drug... Discovery , 2005, 4, 477–488. 2 V. Harmat and G. Naray-Szabo, Croat. Chim. Acta, 2009, 82, 277– 282. 3 J. J. Lavigne and E. V. Anslyn, Angew. Chem., Int. Ed

An Expert-System-Like Feedback Approach in the hp-Version of the Finite Element Method.

DTIC Science & Technology

1986-05-01

and, besides some research codes, the authors know of only two commercial programs based on the p-version. These are the computer program PROBE ( Noetic ...assumptions. Let us first study the problem of the best approximation on the interval I=(-1,1) . Let for E < 1 (x + X - for x > 0 for x and let W(a,E,x) = (x...Comp. and Maths. with Appls., 5, pp. 99-115, 1979. [𔃼] Szabo, B., PROBE: Theoretical Manual, NOETIC Technology Corporation, 7980 Clayton Road, Suite 205

Migrating To The Cloud: Preparing The USMC CDET For MCEITS

DTIC Science & Technology

2016-03-01

Service SAAR System Authorization Access Request SaaS Software as a... Service (IaaS), Platform as a Service (PaaS), Software as a Service ( SaaS ), and Data as a Service (DaaS) (Takai, 2012). A closer examination of each...8 3. Software as a Service NIST described SaaS as a model of cloud computing where the service provider offers its customers fee-based access

East Europe Report, Economic and Industrial Affairs

DTIC Science & Technology

1984-08-20

plant with wet desulfurization of flue gas . This method was pre- viously only successful with hard coal. Before the end of this year a large- scale...REPUBLIC DM 40 Million Euro Credit to Foreign Trade Organization (HANDELSBLATT, 2 Jul 84) 21 Minister Interested in Flue Gas Desulfurization Equipment...Zurich and the Rhein-Saar-Lux AG. 12644 CSO: 2300/565 21 GERMAN DEMOCRATIC REPUBLIC MINISTER INTERESTED IN FLUE GAS DESULFURIZATION EQUIPMENT

[The Homburg clinic for nervous diseases in the National Socialist Era. Special features in the Saarland border region].

PubMed

Keller, I; Flöter, C; Ragoschke-Schumm, A; Faßbender, K

2016-02-01

When the National Socialists (NS) came to power in 1933, the German health care system was reorganized according to the principles of eugenics. Neuropsychiatric patients were victims of compulsory sterilisation and "euthanasia". As the Saar territory did not become part of the German Reich until the 1 March 1935, it is of special interest how quickly and completely NS health care policies were implemented. The analysis is based on medical records of the Homburg State Hospital's (HSH) clinic for nervous diseases from 1929 to 1945 (n =7,816) found in the Saarland University Medical Centre. 1,452 patients were sterilised by force between 1935 and 1939 in the HSH. The most frequent diagnoses were congenital debility, schizophrenia, and epilepsy. Some of the 441 Homburg patients who were transferred to other mental hospitals from 1939 to 1940 were killed in the context of "Aktion T4" and presumably in a nonsystematic manner. NS health care policies were implemented immediately after incorporation of the Saar territory in 1935. Physicians of the HSH were involved directly in compulsory sterilisation of neuropsychiatric patients. An initial intention to kill by the time of patient transfers from Homburg cannot be proven. Further research concerning the killing centres is necessary.

JPRS Report, West Europe.

DTIC Science & Technology

1998-06-01

choice. At that time, Geissler still held the post of minister of social affairs in Rhineland- Palatinate and party chairman Kohl, the then minister...Georg Welsch, a 41-year-old economist, who captured the influential post of director of munici- pal affairs. Welsch, who is fond of appearing in...in the Saar ministry of culture, to the prestigious cultural affairs post . FRANKFURTER ALLGEMEINE has called him a "well-versed expert in cultural

Electrochemical Reduction of Dissolved Oxygen in Alkaline, Solid Polymer Electrolyte Films.

PubMed

Novitski, David; Kosakian, Aslan; Weissbach, Thomas; Secanell, Marc; Holdcroft, Steven

2016-11-30

Mass transport of oxygen through an ionomer contained within the cathode catalyst layer in an anion exchange membrane fuel cell is critical for a functioning fuel cell, yet is relatively unexplored. Moreover, because water is a reactant in the oxygen reduction reaction (ORR) in alkaline media, an adequate supply of water is required. In this work, ORR mass transport behavior is reported for methylated hexamethyl-p-terphenyl polymethylbenzimidazoles (HMT-PMBI), charge balanced by hydroxide ions (IEC from 2.1 to 2.5 mequiv/g), and commercial Fumatec FAA-3 membranes. Electrochemical mass transport parameters are determined by potential step chronoamperometry using a Pt microdisk solid-state electrochemical cell, in air at 60 °C, with relative humidity controlled between 70% and 98%. The oxygen diffusion coefficient (D bO2 ), oxygen concentration (c bO2 ), and oxygen permeability (D bO2 ·c bO2 ) were obtained by nonlinear curve fitting of the current transients using the Shoup-Szabo equation. Mass transport parameters are correlated to water content of the ionomer membrane. It is found that the oxygen diffusion coefficients decreased by 2 orders of magnitude upon reducing the water content of the ionomer membrane by lowering the relative humidity. The limitation of the Shoup-Szabo equation for extracting ORR mass transport parameters using thin ionomer films was evaluated by numerical modeling of the current transients, which revealed that a significant discrepancy (up to 29% under present conditions) was evident for highly hydrated membranes for which the oxygen diffusion coefficient was largest, and in which the oxygen depletion region reached the ionomer/gas interface during the chronoamperometric analysis.

Comparative Magnetic Minima: Characterizing Quiet Times in the Sun and Stars. Symposium of the International Astronomical Union (286th) Held in Mendoza, Argentina on October 3-7, 2011

DTIC Science & Technology

2011-10-01

11:15 – 11:45 Invited Talk – Stars in Magnetic Grand Minima: Where Are They and What Are They Like? Steven Saar (Presentation file) 11:45 – 12:00...of Archaeology and Ancient History, University Rd, Leicester LE1 7RH, United Kingdom IAUS 279 Death of Massive Stars: Supernovae and Gamma-Ray Bursts...of Astronomy & Astrophysics, 525 Davey Lab, University Park, PA 16802, USA IAUS 283 Planetary Nebulae: an Eye to the Future A. MANCHADO, Instituto de

Aromatized arborane/fernane hydrocarbons as biomarkers for cordaites

NASA Astrophysics Data System (ADS)

Auras, Stefan; Wilde, Volker; Scheffler, Kay; Hoernes, Stephan; Kerp, Hans; Püttmann, Wilhelm

2006-12-01

Previous palaeobotanical and palynological studies on coals from Euramerican Pennsylvanian (≡ Late Carboniferous) coal basins indicate a major change in coal-swamp floras, especially at the Westphalian Stephanian (≈Kasimovian Gzhelian, according to Geological Time Scale 2004) boundary. A flora dominated by arborescent lycophytes was replaced by a vegetation dominated by marattialean tree ferns in various Euramerican coal basins. Earlier combined palynological and organic geochemical studies on Westphalian/Stephanian coals and shales from the Saar-Nahe Basin (Germany) revealed that the distribution of aromatized arborane/fernane hydrocarbons in solvent extracts reflects the increasing importance of seed plants, especially cordaites (extinct group of gymnosperms), conifers and pteridosperms. However, the biological source of the precursor molecules could not be specified. To clarify if the arborane/fernane derivatives MATH, MAPH, DAPH 1, and DAPH 2 in Westphalian/Stephanian coals can be assigned to one of the three potential source plant groups, we analyzed coals, sediments and fossil plant remains from different Euramerican locations with respect to their biomarker composition and stable carbon isotopic composition. Thereby, stable carbon isotopic ratios showed only insignificant variations between Westphalian and Stephanian samples and proved to be an unsuitable tool to describe floral changes during the Westphalian/Stephanian of the Saar-Nahe Basin. In contrast, we were able to show for the first time that MATH, MAPH, DAPH 1 and DAPH 2 are prominent constituents only in extracts of cordaitean macrofossils and can therefore be regarded as biomarkers for this group of gymnosperms.

Aromatized arborane/fernane hydrocarbons as biomarkers for cordaites.

PubMed

Auras, Stefan; Wilde, Volker; Scheffler, Kay; Hoernes, Stephan; Kerp, Hans; Püttmann, Wilhelm

2006-12-01

Previous palaeobotanical and palynological studies on coals from Euramerican Pennsylvanian ( identical with Late Carboniferous) coal basins indicate a major change in coal-swamp floras, especially at the Westphalian-Stephanian ( approximately Kasimovian-Gzhelian, according to Geological Time Scale 2004) boundary. A flora dominated by arborescent lycophytes was replaced by a vegetation dominated by marattialean tree ferns in various Euramerican coal basins. Earlier combined palynological and organic geochemical studies on Westphalian/Stephanian coals and shales from the Saar-Nahe Basin (Germany) revealed that the distribution of aromatized arborane/fernane hydrocarbons in solvent extracts reflects the increasing importance of seed plants, especially cordaites (extinct group of gymnosperms), conifers and pteridosperms. However, the biological source of the precursor molecules could not be specified. To clarify if the arborane/fernane derivatives MATH, MAPH, DAPH 1, and DAPH 2 in Westphalian/Stephanian coals can be assigned to one of the three potential source plant groups, we analyzed coals, sediments and fossil plant remains from different Euramerican locations with respect to their biomarker composition and stable carbon isotopic composition. Thereby, stable carbon isotopic ratios showed only insignificant variations between Westphalian and Stephanian samples and proved to be an unsuitable tool to describe floral changes during the Westphalian/Stephanian of the Saar-Nahe Basin. In contrast, we were able to show for the first time that MATH, MAPH, DAPH 1 and DAPH 2 are prominent constituents only in extracts of cordaitean macrofossils and can therefore be regarded as biomarkers for this group of gymnosperms.

Effect of Dipolar Cross Correlation on Model-Free Motional Parameters Obtained from 13C Relaxation in AX 2 Systems

NASA Astrophysics Data System (ADS)

Zhu, L. Y.; Kemple, M. D.; Landy, S. B.; Buckley, P.

The importance of dipolar cross correlation in 13C relaxation studies of molecular motion in AX 2 spin systems (A = 13C, X = 1H) was examined. Several different models for the internal motion, including two restricted-diffusion, and two-site jump models, the Kinosita model [K. Kinosita, Jr., S. Kawato, and A. Ikegami, Biophys. J.20, 289 (1977)], and an axially symmetric model, were applied through the Lipari and Szabo [ J. Am. Chem. Soc.104, 4546 (1982)] formalism to calculate errors in 13C T1, obtained from inversion-recovery measurements under proton saturation, and NOE when dipolar cross correlation is neglected. Motional parameters in the Lipari and Szabo formalism, τ m, S2, and τ e, were then determined from T1 and NOE (including the errors) and compared with parameters initially used to simulate the relaxation data. The resulting differences in the motional parameters, while model dependent, were generally small for plausible motions. At larger S2 values (≥ 0.6), the errors in both τ m and S2 were <5%. Errors in τ e increased with S2 but were usually less than 10%. Larger errors in the parameters were found for an axially symmetric model, but with τ m fixed even those were >5% only for the τ m = 1 ns, τ e = 10 ps case. Furthermore, it was observed that deviations in a given motional parameter were mostly of the same sign, which allows bounds to be set on experimentally derived parameters. Relaxation data for the peptide melittin synthesized with gly enriched with 13C at the backbone cu position and with lys enriched with 13C in the side chain were examined in light of the results of the simulations. All in all, it appears that neglect of dipolar cross correlation in 13C T1 (With proton saturation) and NOE measurements in AX 2 systems does not lead to major problems in interpretation of the results in terms of molecular motion.

Principles of data collection applied to customer knowledge.

PubMed

Quinn, D

1992-01-01

Are customers becoming more demanding or is the state of excellence in service in the United States in decline? With the dawning of the Age of the Global Marketplace and its attendant competition, American consumers have come to expect a higher standard in products and services. They naturally choose to purchase products that have proved to be well made and reliable. In brief, they require satisfaction. Yet business and medical journals, newspapers, and books all have been eager to tell the story of the sad state of customer service. The "demands of American consumers for high-quality service are higher than ever and businesses that ignore the new realities of customer satisfaction can jeopardize not only their future sales but also their very survival" (Szabo, 1989, p. 16).

Experimental Test of the Differential Fluctuation Theorem and a Generalized Jarzynski Equality for Arbitrary Initial States

NASA Astrophysics Data System (ADS)

Hoang, Thai M.; Pan, Rui; Ahn, Jonghoon; Bang, Jaehoon; Quan, H. T.; Li, Tongcang

2018-02-01

Nonequilibrium processes of small systems such as molecular machines are ubiquitous in biology, chemistry, and physics but are often challenging to comprehend. In the past two decades, several exact thermodynamic relations of nonequilibrium processes, collectively known as fluctuation theorems, have been discovered and provided critical insights. These fluctuation theorems are generalizations of the second law and can be unified by a differential fluctuation theorem. Here we perform the first experimental test of the differential fluctuation theorem using an optically levitated nanosphere in both underdamped and overdamped regimes and in both spatial and velocity spaces. We also test several theorems that can be obtained from it directly, including a generalized Jarzynski equality that is valid for arbitrary initial states, and the Hummer-Szabo relation. Our study experimentally verifies these fundamental theorems and initiates the experimental study of stochastic energetics with the instantaneous velocity measurement.

Fallbeispiel Kluftgrundwasserleiter - Charakterisierung eines Grundwasserleiters im Rotliegendsandstein des Saar-Nahe-Beckens

NASA Astrophysics Data System (ADS)

Altenbockum, Michael; Berens, Katharina; Enzmann, Frieder; Kersten, Michael; Rüde, Thomas R.; Wieber, Georg H. E.

2017-12-01

The present case study brings together different field- and laboratory methods and shows how the combination of different methods is able to lead to a plausible geological and hydrogeological conceptual model. The motivation for the study is a large groundwater-contamination site with volatile chlorinated hydrocarbons (CHC). The field work included core drilling, borehole geophysics, field mapping, remote sensing as well as pumping and packer tests. In the laboratory, thin section analyses, computed tomography, mercury porosimetry, compressed permeability measurements and triaxial cell tests were carried out. The Kreuznach- and Standenbühl-Formations can be identified as two types of aquifers by their hydrochemical composition. The hypothesis of continuous porous sandstone-layers in the Kreuznach-Formation as published in former articles (Fürst et al. 1987) was not confirmed. The primary strike of the joint system was identified as N-S and E-W with joint spacings of 3 to 8 m. The laboratory tests show an effective porosity of at most 4% and a high retention capacity for the sandstone of the Kreuznach-Formation. About 9% of the joints are water conduits. The results show that because of heterogeneities in the fractured aquifer, the efficiency of hydraulic remediation of groundwater contamination by pumping wells is unpredictable. Furthermore, the high matrix retention capacity has a negative impact on the release of contaminants and on groundwater remediation.

Fallbeispiel Kluftgrundwasserleiter - Charakterisierung eines Grundwasserleiters im Rotliegendsandstein des Saar-Nahe-Beckens

NASA Astrophysics Data System (ADS)

Altenbockum, Michael; Berens, Katharina; Enzmann, Frieder; Kersten, Michael; Rüde, Thomas R.; Wieber, Georg H. E.

2018-06-01

The present case study brings together different field- and laboratory methods and shows how the combination of different methods is able to lead to a plausible geological and hydrogeological conceptual model. The motivation for the study is a large groundwater-contamination site with volatile chlorinated hydrocarbons (CHC). The field work included core drilling, borehole geophysics, field mapping, remote sensing as well as pumping and packer tests. In the laboratory, thin section analyses, computed tomography, mercury porosimetry, compressed permeability measurements and triaxial cell tests were carried out. The Kreuznach- and Standenbühl-Formations can be identified as two types of aquifers by their hydrochemical composition. The hypothesis of continuous porous sandstone-layers in the Kreuznach-Formation as published in former articles (Fürst et al. 1987) was not confirmed. The primary strike of the joint system was identified as N-S and E-W with joint spacings of 3 to 8 m. The laboratory tests show an effective porosity of at most 4% and a high retention capacity for the sandstone of the Kreuznach-Formation. About 9% of the joints are water conduits. The results show that because of heterogeneities in the fractured aquifer, the efficiency of hydraulic remediation of groundwater contamination by pumping wells is unpredictable. Furthermore, the high matrix retention capacity has a negative impact on the release of contaminants and on groundwater remediation.

A Comparative Proteomic Analysis of the Simple Amino Acid Repeat Distributions in Plasmodia Reveals Lineage Specific Amino Acid Selection

PubMed Central

Dalby, Andrew R.

2009-01-01

Background Microsatellites have been used extensively in the field of comparative genomics. By studying microsatellites in coding regions we have a simple model of how genotypic changes undergo selection as they are directly expressed in the phenotype as altered proteins. The simplest of these tandem repeats in coding regions are the tri-nucleotide repeats which produce a repeat of a single amino acid when translated into proteins. Tri-nucleotide repeats are often disease associated, and are also known to be unstable to both expansion and contraction. This makes them sensitive markers for studying proteome evolution, in closely related species. Results The evolutionary history of the family of malarial causing parasites Plasmodia is complex because of the life-cycle of the organism, where it interacts with a number of different hosts and goes through a series of tissue specific stages. This study shows that the divergence between the primate and rodent malarial parasites has resulted in a lineage specific change in the simple amino acid repeat distribution that is correlated to A–T content. The paper also shows that this altered use of amino acids in SAARs is consistent with the repeat distributions being under selective pressure. Conclusions The study shows that simple amino acid repeat distributions can be used to group related species and to examine their phylogenetic relationships. This study also shows that an outgroup species with a similar A–T content can be distinguished based only on the amino acid usage in repeats, and suggest that this might be a useful feature for proteome clustering. The lineage specific use of amino acids in repeat regions suggests that comparative studies of SAAR distributions between proteomes gives an insight into the mechanisms of expansion and the selective pressures acting on the organism. PMID:19597555

Expansion and internal friction in unfolded protein chain.

PubMed

Yasin, U Mahammad; Sashi, Pulikallu; Bhuyan, Abani K

2013-10-10

Similarities in global properties of homopolymers and unfolded proteins provide approaches to mechanistic description of protein folding. Here, hydrodynamic properties and relaxation rates of the unfolded state of carbonmonoxide-liganded cytochrome c (cyt-CO) have been measured using nuclear magnetic resonance and laser photolysis methods. Hydrodynamic radius of the unfolded chain gradually increases as the solvent turns increasingly better, consistent with theory. Curiously, however, the rate of intrachain contact formation also increases with an increasing denaturant concentration, which, by Szabo, Schulten, and Schulten theory for the rate of intramolecular contact formation in a Gaussian polymer, indicates growing intramolecular diffusion. It is argued that diminishing nonbonded atom interactions with increasing denaturant reduces internal friction and, thus, increases the rate of polypeptide relaxation. Qualitative scaling of the extent of unfolding with nonbonded repulsions allows for description of internal friction by a phenomenological model. The degree of nonbonded atom interactions largely determines the extent of internal friction.

New measurements of photospheric magnetic fields in late-type stars and emerging trends

NASA Technical Reports Server (NTRS)

Saar, S. H.; Linsky, J. L.

1986-01-01

The magnetic fields of late-type stars are measured using the method of Saar et al. (1986). The method includes radiative transfer effects and compensation for line blending; the photospheric magnetic field parameters are derived by comparing observed and theoretical line profiles using an LTE code that includes line saturation and full Zeeman pattern. The preliminary mean active region magnetic field strengths (B) and surface area coverages for 20 stars are discussed. It is observed that there is a trend of increasing B towards the cooler dwarfs stars, and the linear correlation between B and the equipartition value of the magnetic field strength suggests that the photospheric gas pressure determines the photospheric magnetic field strengths. A tendency toward larger filling factors at larger stellar angular velocities is also detected.

Relationship of Interplanetary Shock Micro and Macro Characteristics: A Wind Study

NASA Technical Reports Server (NTRS)

Szabo, Adam; Koval, A

2008-01-01

The non-linear least squared MHD fitting technique of Szabo 11 9941 has been recently further refined to provide realistic confidence regions for interplanetary shock normal directions and speeds. Analyzing Wind observed interplanetary shocks from 1995 to 200 1, macro characteristics such as shock strength, Theta Bn and Mach numbers can be compared to the details of shock micro or kinetic structures. The now commonly available very high time resolution (1 1 or 22 vectors/sec) Wind magnetic field data allows the precise characterization of shock kinetic structures, such as the size of the foot, ramp, overshoot and the duration of damped oscillations on either side of the shock. Detailed comparison of the shock micro and macro characteristics will be given. This enables the elucidation of shock kinetic features, relevant for particle energization processes, for observations where high time resolution data is not available. Moreover, establishing a quantitative relationship between the shock micro and macro structures will improve the confidence level of shock fitting techniques during disturbed solar wind conditions.

Dynamic coupling between coordinates in a model for biomolecular isomerization

NASA Astrophysics Data System (ADS)

Ma, Ao; Nag, Ambarish; Dinner, Aaron R.

2006-04-01

To understand a complex reaction, it is necessary to project the dynamics of the system onto a low-dimensional subspace of physically meaningful coordinates. We recently introduced an automatic method for identifying coordinates that relate closely to stable-state commitment probabilities and successfully applied it to a model for biomolecular isomerization, the C7eq→αR transition of the alanine dipeptide [A. Ma and A. R. Dinner, J. Phys. Chem. B 109, 6769 (2005)]. Here, we explore approximate means for estimating diffusion tensors for systems subject to restraints in one and two dimensions and then use the results together with an extension of Kramers theory for unimolecular reaction rates [A. Berezhkovskii and A. Szabo, J. Chem. Phys. 122, 014503 (2005)] to show explicitly that both the potential of mean force and the diffusion tensor are essential for describing the dynamics of the alanine dipeptide quantitatively. In particular, the signficance of off-diagonal elements of the diffusion tensor suggests that the coordinates of interest are coupled by the hydrodynamic-like response of the bath of remaining degrees of freedom.

Dietrich Stauffer: Unconventional in Science and Life

NASA Astrophysics Data System (ADS)

Chowdhury, Debashish

Dietrich Stauffer (DS) was born in Bonn on 6th February, 1943. He was awarded the Ph.D. degree in Physics by the Technical University of Munich in 1970 for his thesis on phase transitions and superfluidity of helium. After doing postdoctoral research in USA over the next few years, on phase transitions [1], droplet model and nucleation [2], he returned to Germany to join Kurt Binder's group at the Saar State University, Saarbrücken. During this period the classic works of Binder and Stauffer on the cluster theory of nucleation were published [3]. He completed his “Habilitation” (required as eligibility for tenured professor positions in Germany) in Saarbrücken in 1975. Then, in 1977, he joined the faculty of the University of Cologne as an associate professor in the Institute of Theoretical Physics where he has remained ever since.

P651: Battlefield Analysis. The Saar River Crossing, 94th Infantry Division, February 1945

DTIC Science & Technology

1984-01-01

MAJOR THOMAS ELLIS MAJOR STANLEY EVANS MAJOR CHARLES JURGENSEN MAJOR (P) WILLIAM LARSON MAJOR BOBBY LUMHO MAJOR ROBERT MANNINO MAJOR MICHAEL...MAPLES MAJOR PHILLIP RAYMOND MAJOR <P> BURT VANDERCLUTE MAJOR THOMAS WILSON CAPTAIN ROBERT MILLER CAPTAIN MAMA TRAORE (MALI) FORT LEAVENWORTH...to Major Paul W. Marshall, of the 319th Engineers, who, in turn, received assistance from Major John N. Smith, Captain Thomas J. Mclntyre

Regional convergence platforms in Europe—Innovation for space through technology partnerships

NASA Astrophysics Data System (ADS)

Bütfering, Peter

2010-05-01

Upcoming European and national space exploration programs and projects require new capabilities and scientific-technological solutions, and therefore external contributions to innovation. On the other hand European core (industrial) regions are searching of partners for innovation to strengthen their regional economy. In this context the German-based company European Space Innovation AG (former Adam Alva Neil)—highly experienced in the area of convergence activities between space and other sectors—has developed the model of regional convergence platforms (named 'SpaceInnovation'). These platforms are designed to foster technology partnerships between regional companies and institutes from 'non-space' and the space sector (agencies/industry). The article reflects this regional approach and shows examples in three different directions: SpaceInnovation Saar, an benchmark convergence platform initiated by the Saarland region. SpaceInnovation Europe, an European regions network approach. European SpaceInnovation Agent, an interface approach for systematic and sustainable convergence activities.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Libby, S B

Much has been written about Edward TEller, but little of it is objective. Given, on the one hand, his position as one of the most inventive theoretical physicists of the 20th century, and on the other, his central role in the development and advocacy of thermonuclear weapons, one might imagine it impossible at this point in history to write a scholarly, impartial account of Teller's life and his impact. Now, however, Istvan Hargittai, a prominent Hungarian physical chemist and historian of science, has written a balanced, thoughtful, and beautifully research biography that comes closest. Hargittai is uniquely qualified for thismore » difficult task. Coming a generation and a half later from a similar Hungarian-Jewish background, Hargittai understands well the influences and terrible events that shaped Teller. The advent of virulent, political anti-Semitism, first in Hungary and then in Germany, made Teller twice a refugee. Both Teller and Hargittai lost close family in the Holocaust; Hargittai was himself liberated from a Nazi concentration camp as a child. While Teller was in the US by then, his and Hargittai's surviving family members in Hungary suffered mistreatment at the hands of the postwar Hungarian Communist dictatorship. Hargittai's informed Eastern European perspective also provides a fresh viewpoint to the cold war context of the second half of Teller's career. Furthermore, Hargittai's own scientific work in molecular structure clearly makes him appreciate of Teller's breakthroughs in that field in the 1930s.« less

MFIB: a repository of protein complexes with mutual folding induced by binding.

PubMed

Fichó, Erzsébet; Reményi, István; Simon, István; Mészáros, Bálint

2017-11-15

It is commonplace that intrinsically disordered proteins (IDPs) are involved in crucial interactions in the living cell. However, the study of protein complexes formed exclusively by IDPs is hindered by the lack of data and such analyses remain sporadic. Systematic studies benefited other types of protein-protein interactions paving a way from basic science to therapeutics; yet these efforts require reliable datasets that are currently lacking for synergistically folding complexes of IDPs. Here we present the Mutual Folding Induced by Binding (MFIB) database, the first systematic collection of complexes formed exclusively by IDPs. MFIB contains an order of magnitude more data than any dataset used in corresponding studies and offers a wide coverage of known IDP complexes in terms of flexibility, oligomeric composition and protein function from all domains of life. The included complexes are grouped using a hierarchical classification and are complemented with structural and functional annotations. MFIB is backed by a firm development team and infrastructure, and together with possible future community collaboration it will provide the cornerstone for structural and functional studies of IDP complexes. MFIB is freely accessible at http://mfib.enzim.ttk.mta.hu/. The MFIB application is hosted by Apache web server and was implemented in PHP. To enrich querying features and to enhance backend performance a MySQL database was also created. simon.istvan@ttk.mta.hu, meszaros.balint@ttk.mta.hu. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press.

Gd-DTPA-Dopamine-Bisphytanyl Amphiphile: Synthesis, Characterisation and Relaxation Parameters of the Nanoassemblies and Their Potential as MRI Contrast Agents.

PubMed

Gupta, Abhishek; Willis, Scott A; Waddington, Lynne J; Stait-Gardner, Tim; de Campo, Liliana; Hwang, Dennis W; Kirby, Nigel; Price, William S; Moghaddam, Minoo J

2015-09-28

Here, a new amphiphilic magnetic resonance imaging (MRI) contrast agent, a Gd(III)-chelated diethylenetriaminepentaacetic acid conjugated to two branched alkyl chains via a dopamine spacer, Gd-DTPA-dopamine-bisphytanyl (Gd-DTPA-Dop-Phy), which is readily capable of self-assembling into liposomal nanoassemblies upon dispersion in an aqueous solution, is reported. In vitro relaxivities of the dispersions were found to be much higher than Magnevist, a commercially available contrast agent, at 0.47 T but comparable at 9.40 T. Analysis of variable temperature (17)O NMR transverse relaxation measurements revealed the water exchange of the nanoassemblies to be faster than that previously reported for paramagnetic liposomes. Molecular reorientation dynamics were probed by (1)H NMRD profiles using a classical inner and outer sphere relaxation model and a Lipari-Szabo "model-free" approach. High payloads of Gd(III) ions in the liposomal nanoassemblies made solely from the Gd-DTPA-Dop-Phy amphiphiles, in combination with slow molecular reorientation and fast water exchange makes this novel amphiphile a suitable candidate to be investigated as an advanced MRI contrast agent. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Nonlinear and linear wave equations for propagation in media with frequency power law losses

NASA Astrophysics Data System (ADS)

Szabo, Thomas L.

2003-10-01

The Burgers, KZK, and Westervelt wave equations used for simulating wave propagation in nonlinear media are based on absorption that has a quadratic dependence on frequency. Unfortunately, most lossy media, such as tissue, follow a more general frequency power law. The authors first research involved measurements of loss and dispersion associated with a modification to Blackstock's solution to the linear thermoviscous wave equation [J. Acoust. Soc. Am. 41, 1312 (1967)]. A second paper by Blackstock [J. Acoust. Soc. Am. 77, 2050 (1985)] showed the loss term in the Burgers equation for plane waves could be modified for other known instances of loss. The authors' work eventually led to comprehensive time-domain convolutional operators that accounted for both dispersion and general frequency power law absorption [Szabo, J. Acoust. Soc. Am. 96, 491 (1994)]. Versions of appropriate loss terms were developed to extend the standard three nonlinear wave equations to these more general losses. Extensive experimental data has verified the predicted phase velocity dispersion for different power exponents for the linear case. Other groups are now working on methods suitable for solving wave equations numerically for these types of loss directly in the time domain for both linear and nonlinear media.

Functional hierarchy of two L domains in porcine endogenous retrovirus (PERV) that influence release and infectivity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marcucci, Katherine T.; Kellogg School of Science and Technology, Scripps Research Institute, La Jolla, CA, 92037; Martina, Yuri

2008-06-05

The porcine endogenous retrovirus (PERV) Gag protein contains two late (L) domain motifs, PPPY and P(F/S)AP. Using viral release assays we demonstrate that PPPY is the dominant L domain involved in PERV release. PFAP represents a novel retroviral L domain variant and is defined by abnormal viral assembly phenotypes visualized by electron microscopy and attenuation of early PERV release as measured by viral genomes. PSAP is functionally dominant over PFAP in early PERV release. PSAP virions are 3.5-fold more infectious in vitro by TCID{sub 50} and in vivo results in more RNA positive tissues and higher levels of proviral DNAmore » using our human PERV-A receptor (HuPAR-2) transgenic mouse model [Martina, Y., Marcucci, K.T., Cherqui, S., Szabo, A., Drysdale, T., Srinivisan, U., Wilson, C.A., Patience, C., Salomon, D.R., 2006. Mice transgenic for a human porcine endogenous retrovirus receptor are susceptible to productive viral infection. J. Virol. 80 (7), 3135-3146]. The functional hierarchies displayed by PERV L domains, demonstrates that L domain selection in viral evolution exists to promote efficient viral assembly, release and infectivity in the virus-host context.« less

Time-domain comparisons of power law attenuation in causal and noncausal time-fractional wave equations

PubMed Central

Zhao, Xiaofeng; McGough, Robert J.

2016-01-01

The attenuation of ultrasound propagating in human tissue follows a power law with respect to frequency that is modeled by several different causal and noncausal fractional partial differential equations. To demonstrate some of the similarities and differences that are observed in three related time-fractional partial differential equations, time-domain Green's functions are calculated numerically for the power law wave equation, the Szabo wave equation, and for the Caputo wave equation. These Green's functions are evaluated for water with a power law exponent of y = 2, breast with a power law exponent of y = 1.5, and liver with a power law exponent of y = 1.139. Simulation results show that the noncausal features of the numerically calculated time-domain response are only evident very close to the source and that these causal and noncausal time-domain Green's functions converge to the same result away from the source. When noncausal time-domain Green's functions are convolved with a short pulse, no evidence of noncausal behavior remains in the time-domain, which suggests that these causal and noncausal time-fractional models are equally effective for these numerical calculations. PMID:27250193

An empirical investigation of dance addiction.

PubMed

Maraz, Aniko; Urbán, Róbert; Griffiths, Mark Damian; Demetrovics, Zsolt

2015-01-01

Although recreational dancing is associated with increased physical and psychological well-being, little is known about the harmful effects of excessive dancing. The aim of the present study was to explore the psychopathological factors associated with dance addiction. The sample comprised 447 salsa and ballroom dancers (68% female, mean age: 32.8 years) who danced recreationally at least once a week. The Exercise Addiction Inventory (Terry, Szabo, & Griffiths, 2004) was adapted for dance (Dance Addiction Inventory, DAI). Motivation, general mental health (BSI-GSI, and Mental Health Continuum), borderline personality disorder, eating disorder symptoms, and dance motives were also assessed. Five latent classes were explored based on addiction symptoms with 11% of participants belonging to the most problematic class. DAI was positively associated with psychiatric distress, borderline personality and eating disorder symptoms. Hierarchical linear regression model indicated that Intensity (ß=0.22), borderline (ß=0.08), eating disorder (ß=0.11) symptoms, as well as Escapism (ß=0.47) and Mood Enhancement (ß=0.15) (as motivational factors) together explained 42% of DAI scores. Dance addiction as assessed with the Dance Addiction Inventory is associated with indicators of mild psychopathology and therefore warrants further research.

An Empirical Investigation of Dance Addiction

PubMed Central

Maraz, Aniko; Urbán, Róbert; Griffiths, Mark Damian; Demetrovics, Zsolt

2015-01-01

Although recreational dancing is associated with increased physical and psychological well-being, little is known about the harmful effects of excessive dancing. The aim of the present study was to explore the psychopathological factors associated with dance addiction. The sample comprised 447 salsa and ballroom dancers (68% female, mean age: 32.8 years) who danced recreationally at least once a week. The Exercise Addiction Inventory (Terry, Szabo, & Griffiths, 2004) was adapted for dance (Dance Addiction Inventory, DAI). Motivation, general mental health (BSI-GSI, and Mental Health Continuum), borderline personality disorder, eating disorder symptoms, and dance motives were also assessed. Five latent classes were explored based on addiction symptoms with 11% of participants belonging to the most problematic class. DAI was positively associated with psychiatric distress, borderline personality and eating disorder symptoms. Hierarchical linear regression model indicated that Intensity (ß=0.22), borderline (ß=0.08), eating disorder (ß=0.11) symptoms, as well as Escapism (ß=0.47) and Mood Enhancement (ß=0.15) (as motivational factors) together explained 42% of DAI scores. Dance addiction as assessed with the Dance Addiction Inventory is associated with indicators of mild psychopathology and therefore warrants further research. PMID:25951077

Protein Conformational Entropy is Independent of Solvent

NASA Astrophysics Data System (ADS)

Nucci, Nathaniel; Moorman, Veronica; Gledhill, John; Valentine, Kathleen; Wand, A. Joshua

Proteins exhibit most of their conformational entropy in individual bond vector motions on the ps-ns timescale. These motions can be examined through determination of the Lipari-Szabo generalized squared order parameter (O2) using NMR spin relaxation measurements. It is often argued that most protein motions are intimately dependent on the nature of the solvating environment. Here the solvent dependence of the fast protein dynamics is directly assessed. Using the model protein ubiquitin, the order parameters of the backbone and methyl groups are shown to be generally unaffected by up to a six-fold increase in bulk viscosity or by encapsulation in the nanoscale interior of a reverse micelle. In addition, the reverse micelle condition permits direct comparison of protein dynamics to the mobility of the hydration layer; no correlation is observed. The dynamics of aromatic side chains are also assessed and provide an estimate of the length- and timescale of protein motions where solvent dependence is seen. These data demonstrate the solvent independence of conformational entropy, clarifying a long-held misconception in the fundamental behavior of biological macromolecules. Supported by the National Science Foundation.

Kinetics of Internal-Loop Formation in Polypeptide Chains: A Simulation Study

PubMed Central

Doucet, Dana; Roitberg, Adrian; Hagen, Stephen J.

2007-01-01

The speed of simple diffusional motions, such as the formation of loops in the polypeptide chain, places one physical limit on the speed of protein folding. Many experimental studies have explored the kinetics of formation of end-to-end loops in polypeptide chains; however, protein folding more often requires the formation of contacts between interior points on the chain. One expects that, for loops of fixed contour length, interior loops will form more slowly than end-to-end loops, owing to the additional excluded volume associated with the “tails”. We estimate the magnitude of this effect by generating ensembles of randomly coiled, freely jointed chains, and then using the theory of Szabo, Schulten, and Schulten to calculate the corresponding contact formation rates for these ensembles. Adding just a few residues, to convert an end-to-end loop to an internal loop, sharply decreases the contact rate. Surprisingly, the relative change in rate increases for a longer loop; sufficiently long tails, however, actually reverse the effect and accelerate loop formation slightly. Our results show that excluded volume effects in real, full-length polypeptides may cause the rates of loop formation during folding to depart significantly from the values derived from recent loop-formation experiments on short peptides. PMID:17208979

The concept of a hierarchical cosmos

NASA Astrophysics Data System (ADS)

Grujić, P. V.

2003-10-01

The idea of a hierachically structured cosmos can be traced back to the Presocratic Hellada. In the fifth century BC Anaxagoras from Clazomenae developed an idea of a sort of fractal material world, by introducing the concept of seeds (spermata), or homoeomeries as Aristotle dubbed it later (Grujić 2001). Anaxagoras ideas have been grossly neglected during the Middle Ages, to be invoked by a number of post-Renaissance thinkers, like Leibniz, Kant, etc, though neither of them referred to their Greek predecessor. But the real resurrections of the hierarchical paradigm started at the beginning of the last century, with Fournier and Charlier (Grujić 2002). Second half of the 20th century witnessed an intensive development of the theoretical models based on the (multi)fractal paradigm, as well as a considerable body of the observational evidence in favour of the hierarchical cosmos (Saar 1988). We overview the state of the art of the cosmological fractal concept, both within the astrophysical (Sylos Labini et al 1998), methodological (Ribeiro 2001) and epistemological (Ribeiro and Videira 1998) context.

Hematologic and plasma biochemistry reference intervals of healthy adult barn owls (Tyto alba).

PubMed

Szabo, Zoltan; Klein, Akos; Jakab, Csaba

2014-06-01

Hematologic and plasma biochemistry parameters of barn owls (Tyto alba) were studied in collaboration by the Exotic Division of the Faculty of Veterinary Science of the Szent Istvan University and the Eötvös Loránd University, both in Budapest, Hungary. Blood samples were taken from a total of 42 adult barn owls kept in zoos and bird repatriation stations. The following quantitative and qualitative hematologic values were determined: packed cell volume, 46.2 +/- 4%; hemoglobin concentration, 107 +/- 15 g/L; red blood cell count, 3.2 +/- 0.4 x 10(12)/L; white blood cell count, 13.7 +/- 2.7 x 10(9)/L; heterophils, 56.5 +/- 11.5% (7.8 +/- 2 x 10(9)/L); lymphocytes, 40.3 +/- 10.9% (5.5 +/- 1.9 x 10(9)/L); monocytes, 1.8 +/- 2.1% (0.3 +/- 0.3 x 10(9)/ L); eosinophils, 1 +/- 1% (0.1 +/- 0.1 x 10(9)/L); and basophils, 0.6 +/- 0.5% (0.1 +/- 0.1 x 10(9)/L). The following plasma biochemistry values also were determined: aspartate aminotransferase, 272 +/- 43 U/L; L-gamma-glutamyltransferase, 9.5 +/- 4.7 U/L; lipase, 31.7 +/- 11.1 U/L; creatine kinase, 2228 +/- 578 U/L; lactate dehydrogenase, 1702 +/- 475 U/L; alkaline phosphatase, 358 +/- 197 U/L; amylase, 563 +/- 114 U/L; glutamate dehydrogenase, 7.5 +/- 2.5 U/L; total protein, 30.6 +/- 5.3 g/L; uric acid, 428 +/- 102 micromol/L; and bile acids, 43 +/- 18 micromol/L. These results provide reliable reference values for the clinical interpretation of hematologic and plasma biochemistry results for the species.

Banding of NMR-derived Methyl Order Parameters: Implications for Protein Dynamics

PubMed Central

Sharp, Kim A.; Kasinath, Vignesh; Wand, A. Joshua

2014-01-01

Our understanding of protein folding, stability and function has begun to more explicitly incorporate dynamical aspects. Nuclear magnetic resonance has emerged as a powerful experimental method for obtaining comprehensive site-resolved insight into protein motion. It has been observed that methyl-group motion tends to cluster into three “classes” when expressed in terms of the popular Lipari-Szabo model-free squared generalized order parameter. Here the origins of the three classes or bands in the distribution of order parameters are examined. As a first step, a Bayesian based approach, which makes no a priori assumption about the existence or number of bands, is developed to detect the banding of O2axis values derived either from NMR experiments or molecular dynamics simulations. The analysis is applied to seven proteins with extensive molecular dynamics simulations of these proteins in explicit water to examine the relationship between O2 and fine details of the motion of methyl bearing side chains. All of the proteins studied display banding, with some subtle differences. We propose a very simple yet plausible physical mechanism for banding. Finally, our Bayesian method is used to analyze the measured distributions of methyl group motions in the catabolite activating protein and several of its mutants in various liganded states and discuss the functional implications of the observed banding to protein dynamics and function. PMID:24677353

Long-range dynamic effects of point mutations propagate through side chains in the serine protease inhibitor eglin c.

PubMed

Clarkson, Michael W; Lee, Andrew L

2004-10-05

Long-range interactions are fundamental to protein behaviors such as cooperativity and allostery. In an attempt to understand the role protein flexibility plays in such interactions, the distribution of local fluctuations in a globular protein was monitored in response to localized, nonelectrostatic perturbations. Two valine-to-alanine mutations were introduced into the small serine protease inhibitor eglin c, and the (15)N and (2)H NMR spin relaxation properties of these variants were analyzed in terms of the Lipari-Szabo dynamics formalism and compared to those of the wild type. Significant changes in picosecond to nanosecond dynamics were observed in side chains located as much as 13 A from the point of mutation. Additionally, those residues experiencing altered dynamics appear to form contiguous surfaces within the protein. In the case of V54A, the large-to-small mutation results in a rigidification of connected residues, even though this mutation decreases the global stability. These findings suggest that dynamic perturbations arising from single mutations may propagate away from the perturbed site through networks of interacting side chains. That this is observed in eglin c, a classically nonallosteric protein, suggests that such behavior will be observed in many, if not all, globular proteins. Differences in behavior between the two mutants suggest that dynamic responses will be context-dependent.

Dynamic aggregation of the mid-sized gadolinium complex {Ph4[Gd(DTTA)(H2O)2](-)3}.

PubMed

Jaccard, Hugues; Miéville, Pascal; Cannizzo, Caroline; Mayer, Cédric R; Helm, Lothar

2014-02-01

A compound binding three Gd(3+) ions, {Ph4[Gd(DTTA)(H2O)2](-) 3} (where H5DTTA is diethylenetriaminetetraacetic acid), has been synthesized around a hydrophobic center made up of four phenyl rings. In aqueous solution the molecules start to self-aggregate at concentrations well below 1 mM as shown by the increase of rotational correlation times and by the decrease of the translational self-diffusion constant. NMR spectra recorded in aqueous solution of the diamagnetic analogue {Ph4[Y(DTTA)(H2O)2](-)3} show that the aggregation is dynamic and due to intermolecular π-stacking interactions between the hydrophobic aromatic centers. From estimations of effective radii, it can be concluded that the aggregates are composed of two to three monomers. The paramagnetic {Ph4[Gd(DTTA)(H2O)2](-)3} exhibits concentration-dependent (1)H NMR relaxivities with high values of approximately 50 mM(-1) s(-1) (30 MHz, 25 °C) at gadolinium concentrations above 20 mM. A combined analysis of (1)H NMR dispersion profiles measured at different concentrations of the compound and (17)O NMR data measured at various temperatures was performed using different theoretical approaches. The fitted parameters showed that the increase in relaxivity with increasing concentration of the compound is due to slower global rotational motion and an increase of the Lipari-Szabo order parameter S(2).

Analytical time-domain Green’s functions for power-law media

PubMed Central

Kelly, James F.; McGough, Robert J.; Meerschaert, Mark M.

2008-01-01

Frequency-dependent loss and dispersion are typically modeled with a power-law attenuation coefficient, where the power-law exponent ranges from 0 to 2. To facilitate analytical solution, a fractional partial differential equation is derived that exactly describes power-law attenuation and the Szabo wave equation [“Time domain wave-equations for lossy media obeying a frequency power-law,” J. Acoust. Soc. Am. 96, 491–500 (1994)] is an approximation to this equation. This paper derives analytical time-domain Green’s functions in power-law media for exponents in this range. To construct solutions, stable law probability distributions are utilized. For exponents equal to 0, 1∕3, 1∕2, 2∕3, 3∕2, and 2, the Green’s function is expressed in terms of Dirac delta, exponential, Airy, hypergeometric, and Gaussian functions. For exponents strictly less than 1, the Green’s functions are expressed as Fox functions and are causal. For exponents greater than or equal than 1, the Green’s functions are expressed as Fox and Wright functions and are noncausal. However, numerical computations demonstrate that for observation points only one wavelength from the radiating source, the Green’s function is effectively causal for power-law exponents greater than or equal to 1. The analytical time-domain Green’s function is numerically verified against the material impulse response function, and the results demonstrate excellent agreement. PMID:19045774

Detection and Analysis of Circular RNAs by RT-PCR.

PubMed

Panda, Amaresh C; Gorospe, Myriam

2018-03-20

Gene expression in eukaryotic cells is tightly regulated at the transcriptional and posttranscriptional levels. Posttranscriptional processes, including pre-mRNA splicing, mRNA export, mRNA turnover, and mRNA translation, are controlled by RNA-binding proteins (RBPs) and noncoding (nc)RNAs. The vast family of ncRNAs comprises diverse regulatory RNAs, such as microRNAs and long noncoding (lnc)RNAs, but also the poorly explored class of circular (circ)RNAs. Although first discovered more than three decades ago by electron microscopy, only the advent of high-throughput RNA-sequencing (RNA-seq) and the development of innovative bioinformatic pipelines have begun to allow the systematic identification of circRNAs (Szabo and Salzman, 2016; Panda et al ., 2017b; Panda et al ., 2017c). However, the validation of true circRNAs identified by RNA sequencing requires other molecular biology techniques including reverse transcription (RT) followed by conventional or quantitative (q) polymerase chain reaction (PCR), and Northern blot analysis (Jeck and Sharpless, 2014). RT-qPCR analysis of circular RNAs using divergent primers has been widely used for the detection, validation, and sometimes quantification of circRNAs (Abdelmohsen et al ., 2015 and 2017; Panda et al ., 2017b). As detailed here, divergent primers designed to span the circRNA backsplice junction sequence can specifically amplify the circRNAs and not the counterpart linear RNA. In sum, RT-PCR analysis using divergent primers allows direct detection and quantification of circRNAs.

DETECTION OF KOI-13.01 USING THE PHOTOMETRIC ORBIT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shporer, Avi; Jenkins, Jon M.; Seader, Shawn E.

2011-12-15

We use the KOI-13 transiting star-planet system as a test case for the recently developed BEER algorithm, aimed at identifying non-transiting low-mass companions by detecting the photometric variability induced by the companion along its orbit. Such photometric variability is generated by three mechanisms: the beaming effect, tidal ellipsoidal distortion, and reflection/heating. We use data from three Kepler quarters, from the first year of the mission, while ignoring measurements within the transit and occultation, and show that the planet's ephemeris is clearly detected. We fit for the amplitude of each of the three effects and use the beaming effect amplitude tomore » estimate the planet's minimum mass, which results in M{sub p} sin i = 9.2 {+-} 1.1 M{sub J} (assuming the host star parameters derived by Szabo et al.). Our results show that non-transiting star-planet systems similar to KOI-13.01 can be detected in Kepler data, including a measurement of the orbital ephemeris and the planet's minimum mass. Moreover, we derive a realistic estimate of the amplitudes uncertainties, and use it to show that data obtained during the entire lifetime of the Kepler mission of 3.5 years will allow detecting non-transiting close-in low-mass companions orbiting bright stars, down to the few Jupiter mass level. Data from the Kepler Extended Mission, if funded by NASA, will further improve the detection capabilities.« less

Dynamic Looping of a Free-Draining Polymer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ye, Felix X. -F.; Stinis, Panos; Qian, Hong

Here, we revisit the celebrated Wilemski--Fixman (WF) treatment for the looping time of a free-draining polymer. The WF theory introduces a sink term into the Fokker--Planck equation for themore » $3(N+1)$-dimensional Ornstein--Uhlenbeck process of polymer dynamics, which accounts for the appropriate boundary condition due to the formation of a loop. The assumption for WF theory is considerably relaxed. A perturbation method approach is developed that justifies and generalizes the previous results using either a delta sink or a Heaviside sink. For both types of sinks, we show that under the condition of a small dimensionless $$\\epsilon$$, the ratio of capture radius to the Kuhn length, we are able to systematically produce all known analytical and asymptotic results obtained by other methods. This includes most notably the transition regime between the $N^2$ scaling of Doi, and $$N\\sqrt{N}/\\epsilon$$ scaling of Szabo, Schulten, and Schulten. The mathematical issue at play is the nonuniform convergence of $$\\epsilon\\to 0$$ and $$N\\to\\infty$$, the latter being an inherent part of the theory of a Gaussian polymer. Our analysis yields a novel term in the analytical expression for the looping time with small $$\\epsilon$$, which was previously unknown. Monte Carlo numerical simulations corroborate the analytical findings. The systematic method developed here can be applied to other systems modeled by multidimensional Smoluchowski equations.« less

Determination of O₂ Mass Transport at the Pt | PFSA Ionomer Interface under Reduced Relative Humidity.

PubMed

Novitski, David; Holdcroft, Steven

2015-12-16

Oxygen mass transport resistance through the ionomer component in the cathode catalyst layer is considered to contribute overpotential losses in polymer electrolyte membrane fuel cells. Whereas it is known that water uptake, water transport, and proton conductivity are reduced upon reducing relative humidity, the effect on oxygen mass transport remains unknown. We report a two-electrode approach to determine mass transport coefficients for the oxygen reduction reaction in air at the Pt/perfluorosulfonic acid ionomer membrane interface between 90 and 30% RH at 70 °C using a Pt microdisk in a solid state electrochemical cell. Potential-step chronoamperometry was performed at specific mass-transport limiting potentials to allow for the elucidation of the oxygen diffusion coefficient (D(bO2)) and oxygen concentration (c(bO2)). In our efforts, novel approaches in data acquisition, as well as analysis, were examined because of the dynamic nature of the membrane under lowered hydration conditions. Linear regression analysis reveals a decrease in oxygen permeability (D(bO2c(bO2)) by a factor of 1.7 and 3.4 from 90 to 30% RH for Nafion 211 membrane and membranes cast from Nafion DE2020 ionomer solutions, respectively. Additionally, nonlinear curve fitting by way of the Shoup-Szabo equation is employed to analyze the entire current transient during potential step controlled ORR. We also report on the presence of an RH dependence of our previously reported time-dependency measurements for O2 mass transport coefficients.

Dilemma posed by uranium-series dates on archaeologically significant bones from Valsequillo, Puebla, Mexico

USGS Publications Warehouse

Szabo, B. J.; Malde, H.E.; Irwin-Williams, C.

1969-01-01

In an attempt to date stone artifacts of Early Man excavated from several sites at the Valsequillo Reservoir, a few kilometers south of Puebla, Mexico, Szabo applied the uranium-series method on bone samples known to be either from the same geologic formation as the sites or in direct association with the artifacts. The geologic context of the bones was studied by Malde, and the archaeological sites were excavated by Irwin-Williams. A date determined for bone associated with an artifact (Caulapan sample M-B-6, see below) agrees with a radiocarbon date for fossil mollusks in the same bed and indicates man's presence more than 20 000 years ago. However, some of these bone dates exceed 200 000 years. Because such dates for man in North America conflict with all prior archaeological evidence here and abroad, we are confronted by a dilemna - either to defend the dates against an onslaught of archaeological thought, or to abandon the uranium method in this application as being so much wasted effort. Faced with these equally undesirable alternatives, and unable to decide where the onus fairly lies (if a choice must be made), we give the uranium-series dates as a possible stimulus for further mutual work in isotopic dating of archaeological material. A sample from the Lindenmeier archaeological site north of Fort Collins and another from a Pleistocene terrace along the Arkansas River, both in Colorado, were also dated. ?? 1969.

[First experience in the thyroid and parathyroid surgery using the da Vinci® system].

PubMed

Al Kadah, B; Siemer, S; Schick, B

2014-01-01

Endoscopic surgery for the treatment of thyroid and parathyroid pathologies is gaining increasing attention. The da Vinci® system has been already widely used in different fields of medicine including recently thyroid and parathyroid surgery. Herein we report our first experiences in endoscopic surgery of thyroid and parathyroid pathologies using the da Vinci® system. 8 patients presenting with struma nodosa in 6 cases and parathyroid adenomas in 2 cases have been treated using the da Vinci® system at the ENT department of Homburg/Saar University. The skin incision to introduce the instruments with the da Vinci® system were axilar or at the lateral segment of the clavicle. The neurovascular structures like inferior laryngeal nerve as well as the pathologies were clearly 3-dimensional visualized in all 8 cases. No paralysis of the vocal cord was observed. All patients had in histological examination a benign pathology. The endoscopic surgery of the thyroid and parathyroid gland can be performed using the da Vinci® system and offers an excellent, intraoperative, 3-dimensional visualization of the neurovascular structures. Additionally the da Vinci® system enables skin incisions within considerable distance from the thyroid and parathyroid gland. © Georg Thieme Verlag KG Stuttgart · New York.

Quantitative comparison of initial soil erosion processes and runoff generation in Spanish and German vineyards.

PubMed

Rodrigo Comino, J; Iserloh, T; Lassu, T; Cerdà, A; Keestra, S D; Prosdocimi, M; Brings, C; Marzen, M; Ramos, M C; Senciales, J M; Ruiz Sinoga, J D; Seeger, M; Ries, J B

2016-09-15

The aim of this study was to enable a quantitative comparison of initial soil erosion processes in European vineyards using the same methodology and equipment. The study was conducted in four viticultural areas with different characteristics (Valencia and Málaga in Spain, Ruwer-Mosel valley and Saar-Mosel valley in Germany). Old and young vineyards, with conventional and ecological planting and management systems were compared. The same portable rainfall simulator with identical rainfall intensity (40mmh(-1)) and sampling intervals (30min of test duration, collecting the samples at 5-min-intervals) was used over a circular test plot with 0.28m(2). The results of 83 simulations have been analysed and correlation coefficients were calculated for each study area to identify the relationship between environmental plot characteristics, soil texture, soil erosion, runoff and infiltration. The results allow for identification of the main factors related to soil properties, topography and management, which control soil erosion processes in vineyards. The most important factors influencing soil erosion and runoff were the vegetation cover for the ecological German vineyards (with 97.6±8% infiltration coefficients) and stone cover, soil moisture and slope steepness for the conventional land uses. Copyright © 2016 Elsevier B.V. All rights reserved.

Potentially Hazardous Asteroid (85989) 1999 JD6: Radar, Infrared, and Lightcurve Observations and a Preliminary Shape Model

NASA Astrophysics Data System (ADS)

Marshall, Sean E.; Howell, Ellen S.; Brozović, Marina; Taylor, Patrick A.; Campbell, Donald B.; Benner, Lance A. M.; Naidu, Shantanu P.; Giorgini, Jon D.; Jao, Joseph S.; Lee, Clement G.; Richardson, James E.; Rodriguez-Ford, Linda A.; Rivera-Valentin, Edgard G.; Ghigo, Frank; Kobelski, Adam; Busch, Michael W.; Pravec, Petr; Warner, Brian D.; Reddy, Vishnu; Hicks, Michael D.; Crowell, Jenna L.; Fernandez, Yanga R.; Vervack, Ronald J.; Nolan, Michael C.; Magri, Christopher; Sharkey, Benjamin; Bozek, Brandon

2015-11-01

We report observations of potentially hazardous asteroid (85989) 1999 JD6, which passed 0.048 AU from Earth (19 lunar distances) during its close approach on July 25, 2015. During eleven days between July 15 and August 4, 2015, we observed 1999 JD6 with the Goldstone Solar System Radar and with Arecibo Observatory's planetary radar, including bistatic reception of some Goldstone echoes at Green Bank. We obtained delay-Doppler radar images at a wide range of latitudes, with range resolutions varying from 7.5 to 150 meters per pixel, depending on the observing conditions. We acquired near-infrared spectra from the NASA InfraRed Telescope Facility (IRTF) on two nights in July 2015, at wavelengths from 0.75 to 5.0 microns, showing JD6's thermal emission. We also obtained optical lightcurves from Ondrejov Observatory (in 1999), Table Mountain Observatory (in 2000), and Palmer Divide Station (in 2015). Previous observers had suggested that 1999 JD6 was most likely an elongated object, based on its large lightcurve amplitude of 1.2 magnitudes (Szabo et al. 2001; Polishook and Brosch 2008; Warner 2014). The radar images reveal an elongated peanut-shaped object, with two lobes separated by a sharp concavity. JD6's maximum diameter is about two kilometers, and its larger lobe is approximately 50% longer than its smaller lobe. The larger lobe has a concavity on its end. We will present more details on the shape and rotation state of 1999 JD6, as well as its surface properties from optical and infrared data and thermal modeling.

15N backbone dynamics of the S-peptide from ribonuclease A in its free and S-protein bound forms: toward a site-specific analysis of entropy changes upon folding.

PubMed Central

Alexandrescu, A. T.; Rathgeb-Szabo, K.; Rumpel, K.; Jahnke, W.; Schulthess, T.; Kammerer, R. A.

1998-01-01

Backbone 15N relaxation parameters (R1, R2, 1H-15N NOE) have been measured for a 22-residue recombinant variant of the S-peptide in its free and S-protein bound forms. NMR relaxation data were analyzed using the "model-free" approach (Lipari & Szabo, 1982). Order parameters obtained from "model-free" simulations were used to calculate 1H-15N bond vector entropies using a recently described method (Yang & Kay, 1996), in which the form of the probability density function for bond vector fluctuations is derived from a diffusion-in-a-cone motional model. The average change in 1H-15N bond vector entropies for residues T3-S15, which become ordered upon binding of the S-peptide to the S-protein, is -12.6+/-1.4 J/mol.residue.K. 15N relaxation data suggest a gradient of decreasing entropy values moving from the termini toward the center of the free peptide. The difference between the entropies of the terminal and central residues is about -12 J/mol residue K, a value comparable to that of the average entropy change per residue upon complex formation. Similar entropy gradients are evident in NMR relaxation studies of other denatured proteins. Taken together, these observations suggest denatured proteins may contain entropic contributions from non-local interactions. Consequently, calculations that model the entropy of a residue in a denatured protein as that of a residue in a di- or tri-peptide, might over-estimate the magnitude of entropy changes upon folding. PMID:9521116

Competing nucleation pathways in a mixture of oppositely charged colloids: out-of-equilibrium nucleation revisited.

PubMed

Peters, Baron

2009-12-28

Recent simulations of crystal nucleation from a compressed liquid of oppositely charged colloids show that the natural Brownian dynamics results in nuclei of a charge-disordered FCC (DFCC) solid whereas artificially accelerated dynamics with charge swap moves result in charge-ordered nuclei of a CsCl phase. These results were interpreted as a breakdown of the quasiequilibrium assumption for precritical nuclei. We use structure-specific nucleus size coordinates for the CsCl and DFCC structures and equilibrium based sampling methods to understand the dynamical effects on structure selectivity in this system. Nonequilibrium effects observed in previous simulations emerge from a diffusion tensor that dramatically changes when charge swap moves are used. Without the charge swap moves diffusion is strongly anisotropic with very slow motion along the charge-ordered CsCl axis and faster motion along the DFCC axis. Kramers-Langer-Berezhkovskii-Szabo theory predicts that under the realistic dynamics, the diffusion anisotropy shifts the current toward the DFCC axis. The diffusion tensor also varies with location on the free energy landscape. A numerical calculation of the current field with a diffusion tensor that depends on the location in the free energy landscape exacerbates the extent to which the current is skewed toward DFCC structures. Our analysis confirms that quasiequilibrium theories based on equilibrium properties can explain the nonequilibrium behavior of this system. Our analysis also shows that using a structure-specific nucleus size coordinate for each possible nucleation product can provide mechanistic insight on selectivity and competition between nucleation pathways.

Competing nucleation pathways in a mixture of oppositely charged colloids: Out-of-equilibrium nucleation revisited

NASA Astrophysics Data System (ADS)

Peters, Baron

2009-12-01

Recent simulations of crystal nucleation from a compressed liquid of oppositely charged colloids show that the natural Brownian dynamics results in nuclei of a charge-disordered FCC (DFCC) solid whereas artificially accelerated dynamics with charge swap moves result in charge-ordered nuclei of a CsCl phase. These results were interpreted as a breakdown of the quasiequilibrium assumption for precritical nuclei. We use structure-specific nucleus size coordinates for the CsCl and DFCC structures and equilibrium based sampling methods to understand the dynamical effects on structure selectivity in this system. Nonequilibrium effects observed in previous simulations emerge from a diffusion tensor that dramatically changes when charge swap moves are used. Without the charge swap moves diffusion is strongly anisotropic with very slow motion along the charge-ordered CsCl axis and faster motion along the DFCC axis. Kramers-Langer-Berezhkovskii-Szabo theory predicts that under the realistic dynamics, the diffusion anisotropy shifts the current toward the DFCC axis. The diffusion tensor also varies with location on the free energy landscape. A numerical calculation of the current field with a diffusion tensor that depends on the location in the free energy landscape exacerbates the extent to which the current is skewed toward DFCC structures. Our analysis confirms that quasiequilibrium theories based on equilibrium properties can explain the nonequilibrium behavior of this system. Our analysis also shows that using a structure-specific nucleus size coordinate for each possible nucleation product can provide mechanistic insight on selectivity and competition between nucleation pathways.

A Method for Extracting the Free Energy Surface and Conformational Dynamics of Fast-Folding Proteins from Single Molecule Photon Trajectories

PubMed Central

2015-01-01

Single molecule fluorescence spectroscopy holds the promise of providing direct measurements of protein folding free energy landscapes and conformational motions. However, fulfilling this promise has been prevented by technical limitations, most notably, the difficulty in analyzing the small packets of photons per millisecond that are typically recorded from individual biomolecules. Such limitation impairs the ability to accurately determine conformational distributions and resolve sub-millisecond processes. Here we develop an analytical procedure for extracting the conformational distribution and dynamics of fast-folding proteins directly from time-stamped photon arrival trajectories produced by single molecule FRET experiments. Our procedure combines the maximum likelihood analysis originally developed by Gopich and Szabo with a statistical mechanical model that describes protein folding as diffusion on a one-dimensional free energy surface. Using stochastic kinetic simulations, we thoroughly tested the performance of the method in identifying diverse fast-folding scenarios, ranging from two-state to one-state downhill folding, as a function of relevant experimental variables such as photon count rate, amount of input data, and background noise. The tests demonstrate that the analysis can accurately retrieve the original one-dimensional free energy surface and microsecond folding dynamics in spite of the sub-megahertz photon count rates and significant background noise levels of current single molecule fluorescence experiments. Therefore, our approach provides a powerful tool for the quantitative analysis of single molecule FRET experiments of fast protein folding that is also potentially extensible to the analysis of any other biomolecular process governed by sub-millisecond conformational dynamics. PMID:25988351

A Method for Extracting the Free Energy Surface and Conformational Dynamics of Fast-Folding Proteins from Single Molecule Photon Trajectories.

PubMed

Ramanathan, Ravishankar; Muñoz, Victor

2015-06-25

Single molecule fluorescence spectroscopy holds the promise of providing direct measurements of protein folding free energy landscapes and conformational motions. However, fulfilling this promise has been prevented by technical limitations, most notably, the difficulty in analyzing the small packets of photons per millisecond that are typically recorded from individual biomolecules. Such limitation impairs the ability to accurately determine conformational distributions and resolve sub-millisecond processes. Here we develop an analytical procedure for extracting the conformational distribution and dynamics of fast-folding proteins directly from time-stamped photon arrival trajectories produced by single molecule FRET experiments. Our procedure combines the maximum likelihood analysis originally developed by Gopich and Szabo with a statistical mechanical model that describes protein folding as diffusion on a one-dimensional free energy surface. Using stochastic kinetic simulations, we thoroughly tested the performance of the method in identifying diverse fast-folding scenarios, ranging from two-state to one-state downhill folding, as a function of relevant experimental variables such as photon count rate, amount of input data, and background noise. The tests demonstrate that the analysis can accurately retrieve the original one-dimensional free energy surface and microsecond folding dynamics in spite of the sub-megahertz photon count rates and significant background noise levels of current single molecule fluorescence experiments. Therefore, our approach provides a powerful tool for the quantitative analysis of single molecule FRET experiments of fast protein folding that is also potentially extensible to the analysis of any other biomolecular process governed by sub-millisecond conformational dynamics.

Removing Activity-Related Radial Velocity Noise to Improve Extrasolar Planet Searches

NASA Technical Reports Server (NTRS)

Saar, Steven; Lindstrom, David M. (Technical Monitor)

2004-01-01

We have made significant progress towards the proposal goals of understanding the causes and effects of magnetic activity-induced radial velocity (v_r) jitter and developing methods for correcting it. In the process, we have also made some significant discoveries in the fields of planet-induced stellar activity, planet detection methods, M dwarf convection, starspot properties, and magnetic dynamo cycles. We have obtained super high resolution (R approximately 200,000), high S / N (greater than 300) echelle study of joint line bisector and radial velocity variations using the McDonald 2-D coude. A long observing run in October 2002 in particular was quite successful (8 clear nights). We now have close to three years of data, which begins to sample a good fraction of the magnetic cycle timescales for some of our targets (e.g., kappa Ceti; P_cyc = 5.6 yrs). This will be very helpful in unraveling the complex relationships between plage and radial velocity (v-r) changes which we have uncovered. Preliminary analysis (Saar et al. 2003) of the data in hand, reveals correlations between median line bisector displacement and v_r. The correlation appears to be specific the the particular star being considered, probably since it is a function of both spectral type and rotation rate. Further analysis and interpretation will be in the context of evolving plage models and is in progress.

Effect of ship locking on sediment oxygen uptake in impounded rivers

NASA Astrophysics Data System (ADS)

Lorke, A.; McGinnis, D. F.; Maeck, A.; Fischer, H.

2012-12-01

In the majority of large river systems, flow is regulated and/or otherwise affected by operational and management activities, such as ship locking. The effect of lock operation on sediment-water oxygen fluxes was studied within a 12.9 km long impoundment at the Saar River (Germany) using eddy-correlation flux measurements. The continuous observations cover a time period of nearly 5 days and 39 individual locking events. Ship locking is associated with the generation of surges propagating back and forth through the impoundment which causes strong variations of near-bed current velocity and turbulence. These wave-induced flow variations cause variations in sediment-water oxygen fluxes. While the mean flux during time periods without lock operation was 0.5 ± 0.1 g m-2 d-1, it increased by about a factor of 2 to 1.0 ± 0.5 g m-2 d-1within time periods with ship locking. Following the daily schedule of lock operations, fluxes are predominantly enhanced during daytime and follow a pronounced diurnal rhythm. The driving force for the increased flux is the enhancement of diffusive transport across the sediment-water interface by bottom-boundary layer turbulence and perhaps resuspension. Additional means by which the oxygen budget of the impoundment is affected by lock-induced flow variations are discussed.

Seasonal variability in Tibetan seismicity 1991-2013

NASA Astrophysics Data System (ADS)

Randolph-Flagg, N. G.; Day, J.; Burgmann, R.; Manga, M.

2013-12-01

Seismicity in the High Himalaya in Nepal (Bollinger et al., GRL, 2007, Bettinelli et al., EPSL, 2008), the San Andreas fault near Parkfield, California (Christiansen et al., 2007), Mt. Hochstaufen in Germany (Hainzl et al., 2006), and some Cascade Range volcanoes (Christiansen et al., GRL, 2005; Saar and Manga, EPSL, 2003) shows seasonal modulation. From 1991 to 2013, seismicity throughout the ~500 km by ~1000 km Tibetan Plateau also appears to be modulated with 66% more shallow (depth < 20km) earthquakes in spring and fall than in the summer and winter. This variation cannot be explained by seasonal changes in seismic network coverage or triggering by (or occurrence of) large magnitude earthquakes. Significant foreshocks and aftershocks of the 2008 M7.9 Wenchuan earthquake in Sichuan dominate the seismic record from 2008 to 2009 and those years are not considered in the statistical analysis. The Tibetan seismicity, although weaker, is very similar to the modulation observed in Nepal and in the locked section of the San Andreas fault at Parkfield. To explain this biannual signal, we assess the possible effects of hydrologic loading (and unloading), pore pressure diffusion, fault plane orientation, evapotranspiration, earth tides, and atmospheric pressure. The similarity in seasonal signals throughout the area suggests that many faults on the Tibetan Plateau are critically stressed and sensitive to small transient stresses.

Effect of Tool Offset and Tool Rotational Speed on Enhancing Mechanical Property of Al/Mg Dissimilar FSW Joints

NASA Astrophysics Data System (ADS)

Liang, Zhiyuan; Chen, Ke; Wang, Xiaona; Yao, Junshan; Yang, Qi; Zhang, Lanting; Shan, Aidang

2013-08-01

Friction stir welding (FSW) is a promising solid-state joining technique for producing effective welds between Al alloy and Mg alloy. However, previously reported Al/Mg dissimilar FSW joints generally have limited strength or barely any ductility with relatively high strength, which was blamed on the brittle intermetallics formed during welding. In this study, effective joints with comparably high strength (163 MPa) and large elongation (~6 pct) were obtained. Three crucial/weak zones were identified in the welds: (1) Al/Mg bottom interface (BI) zone that resulted from the insufficient materials' intermixing and interdiffusion; (2) banded structure (BS) zone which contains intermetallic particles possibly formed by constitutional liquation; and (3) softened Al alloy to the retreating side (SAA-RS) zone due to the dissolution and coarsening of the strengthening precipitates. Three fracture modes observed in the tensile specimens perpendicular to the weld seam were found closely related to these zones. Their microstructure evolution with the change of tool rotational speed and tool offset was characterized and the consequent effect on the fracture mode alteration was studied. It turned out that enhancing the strengths of all these zones, but keeping the strength of the SAA lowest, is an effective way for enhancing ductility while keeping comparatively high strength in Al/Mg FSW joints. Also, suggestions for further improving the mechanical property of the Al/Mg dissimilar FSW joints were made accordingly for practical applications.

Phosphinic derivative of DTPA conjugated to a G5 PAMAM dendrimer: an 17O and 1H relaxation study of its Gd(III) complex.

PubMed

Lebdusková, Petra; Sour, Angélique; Helm, Lothar; Tóth, Eva; Kotek, Jan; Lukes, Ivan; Merbach, André E

2006-07-28

A DTPA-based chelate containing one phosphinate group was conjugated to a generation 5 polyamidoamine (PAMAM) dendrimer via a benzylthiourea linkage. The Gd(III) complex of this novel conjugate has potential as a contrast agent for magnetic resonance imaging (MRI). The chelates bind Gd3+via three nitrogen atoms, four carboxylates and one phosphinate oxygen, and one water molecule completes the inner coordination sphere. The monomer Gd(III) chelates bearing nitrobenzyl and aminobenzyl groups ([Gd(DTTAP-bz-NO2)(H2O)]2- and [Gd(DTTAP-bz-NH2)(H2O)]2-) as well as the dendrimeric Gd(III) complex G5-(Gd(DTTAP))63) were studied by multiple-field, variable temperature 17O and 1H NMR. The rate of water exchange is faster than that of [Gd(DTPA)(H2O)]2- and very similar on the two monomeric complexes (8.9 and 8.3 x 10(6) s-1 for [Gd(DTTAP-bz-NO2)(H2O)]2- and [Gd(DTTAP-bz-NH2)(H2O)]2-, respectively), while it is decreased on the dendrimeric conjugate (5.0 x 10(6) s-1). The Gd(III) complex of the dendrimer conjugate has a relaxivity of 26.8 mM-1 s-1 at 37 degrees C and 0.47 T (corresponding to 1H Larmor frequency of 20 MHz). Given the contribution of the second sphere water molecules to the overall relaxivity, this value is slightly higher than those reported for similar size dendrimers. The experimental 17O and 1H NMR data were fitted to the Solomon-Bloembergen-Morgan equations extended with a contribution from second coordination sphere water molecules. The rotational dynamics of the dendrimeric conjugate was described in terms of global and local motions with the Lipari-Szabo approach.

Translational, rotational and internal dynamics of amyloid β-peptides (Aβ40 and Aβ42) from molecular dynamics simulations

NASA Astrophysics Data System (ADS)

Bora, Ram Prasad; Prabhakar, Rajeev

2009-10-01

In this study, diffusion constants [translational (DT) and rotational (DR)], correlation times [rotational (τrot) and internal (τint)], and the intramolecular order parameters (S2) of the Alzheimer amyloid-β peptides Aβ40 and Aβ42 have been calculated from 150 ns molecular dynamics simulations in aqueous solution. The computed parameters have been compared with the experimentally measured values. The calculated DT of 1.61×10-6 cm2/s and 1.43×10-6 cm2/s for Aβ40 and Aβ42, respectively, at 300 K was found to follow the correct trend defined by the Debye-Stokes-Einstein relation that its value should decrease with the increase in the molecular weight. The estimated DR for Aβ40 and Aβ42 at 300 K are 0.085 and 0.071 ns-1, respectively. The rotational (Crot(t)) and internal (Cint(t)) correlation functions of Aβ40 and Aβ42 were observed to decay at nano- and picosecond time scales, respectively. The significantly different time decays of these functions validate the factorization of the total correlation function (Ctot(t)) of Aβ peptides into Crot(t) and Cint(t). At both short and long time scales, the Clore-Szabo model that was used as Cint(t) provided the best behavior of Ctot(t) for both Aβ40 and Aβ42. In addition, an effective rotational correlation time of Aβ40 is also computed at 18 °C and the computed value (2.30 ns) is in close agreement with the experimental value of 2.45 ns. The computed S2 parameters for the central hydrophobic core, the loop region, and C-terminal domains of Aβ40 and Aβ42 are in accord with the previous studies.

Cell Injury and Repair Resulting from Sleep Loss and Sleep Recovery in Laboratory Rats

PubMed Central

Everson, Carol A.; Henchen, Christopher J.; Szabo, Aniko; Hogg, Neil

2014-01-01

Study Objectives: Increased cell injury would provide the type of change in constitution that would underlie sleep disruption as a risk factor for multiple diseases. The current study was undertaken to investigate cell injury and altered cell fate as consequences of sleep deprivation, which were predicted from systemic clues. Design: Partial (35% sleep reduction) and total sleep deprivation were produced in rats for 10 days, which was tolerated and without overtly deteriorated health. Recovery rats were similarly sleep deprived for 10 days, then allowed undisturbed sleep for 2 days. The plasma, liver, lung, intestine, heart, and spleen were analyzed and compared to control values for damage to DNA, proteins, and lipids; apoptotic cell signaling and death; cell proliferation; and concentrations of glutathione peroxidase and catalase. Measurements and Results: Oxidative DNA damage in totally sleep deprived rats was 139% of control values, with organ-specific effects in the liver (247%), lung (166%), and small intestine (145%). Overall and organ-specific DNA damage was also increased in partially sleep deprived rats. In the intestinal epithelium, total sleep deprivation resulted in 5.3-fold increases in dying cells and 1.5-fold increases in proliferating cells, compared with control. Two days of recovery sleep restored the balance between DNA damage and repair, and resulted in normal or below-normal metabolic burdens and oxidative damage. Conclusions: These findings provide physical evidence that sleep loss causes cell damage, and in a manner expected to predispose to replication errors and metabolic abnormalities; thereby providing linkage between sleep loss and disease risk observed in epidemiological findings. Properties of recovery sleep include biochemical and molecular events that restore balance and decrease cell injury. Citation: Everson CA, Henchen CJ, Szabo A, Hogg N. Cell injury and repair resulting from sleep loss and sleep recovery in laboratory rats

Hydrogeological interpretation of natural radionuclide contents in Austrian groundwaters

NASA Astrophysics Data System (ADS)

Schubert, Gerhard; Berka, Rudolf; Hörhan, Thomas; Katzlberger, Christian; Landstetter, Claudia; Philippitsch, Rudolf

2010-05-01

The Austrian Agency for Health and Food Safety (AGES) stores comprehensive data sets of radionuclide contents in Austrian groundwater. There are several analyses concerning Rn-222, Ra-226, gross alpha and gross beta as well as selected analyses of Ra-228, Pb-210, Po-210, Uranium and U-234/U-238. In a current project financed by the Austrian Federal Ministry of Agriculture, Forestry, Environment and Water Management, AGES and the Geological Survey of Austria (GBA) are evaluating these data sets with regard to the geological backgrounds. Several similar studies based on groundwater monitoring have been made in the USA (for instance by Focazio, M.J., Szabo, Z., Kraemer, T.F., Mullin, A.H., Barringer, T.H., De Paul, V.T. (2001): Occurrence of selected radionuclides in groundwater used for drinking water in the United States: a reconnaissance survey, 1998. U.S. Geological Survey Water-Resources Investigations Report 00-4273). The geological background for the radionuclide contents of groundwater will be derived from geological maps in combination with existing Thorium and Uranium analyses of the country rocks and stream-sediments and from airborne radiometric maps. Airborne radiometric data could contribute to identify potential radionuclide hot spot areas as only airborne radiometric mapping could provide countrywide Thorium and Uranium data coverage in high resolution. The project will also focus on the habit of the sampled wells and springs and the hydrological situation during the sampling as these factors can have an important influence on the Radon content of the sampled groundwater (Schubert, G., Alletsgruber, I., Finger, F., Gasser, V., Hobiger, G. and Lettner, H. (2010): Radon im Grundwasser des Mühlviertels (Oberösterreich) Grundwasser. - Springer (in print). Based on the project results an overview map (1:500,000) concerning the radionuclide potential should be produced. The first version should be available in February 2011.

Correlating folding and signaling in a photoreceptor by single molecule measurements and energy landscape calculations

NASA Astrophysics Data System (ADS)

Hoff, Wouter

2007-03-01

Receptor activation is a fundamental process in biological signaling. We study the structural changes during activation of photoactive yellow protein (PYP). This is triggered by photoisomerization of the p-coumaric acid (pCA) chromophore of PYP, which converts the initial pG state into the activated pB state. Mechanical unfolding of Cys-linked PYP multimers probed by atomic force microscopy (AFM) in the presence and absence of illumination reveals that the core of the protein is extended by 3 nm and destabilized by 30 percent in pB. These results establish a generally applicable single molecule approach for mapping functional conformational changes to selected regions of a protein and indicate that stimulus-induced partial protein unfolding can be employed as a signaling mechanism. Comparative measurements, Jarzynski-Hummer-Szabo analysis of the data, and steered MD simulations of two double-Cys PYP mutants reveal strong anisotropy in the unfolding mechanism along the two axes defined by the Cys residues. Unfolding along one axis exhibits a transition-state-like feature where six hydrogen bonds break simultaneously. The other axis displays an unpeaked force profile reflecting a non-cooperative transition, challenging the notion that cooperative unfolding is a universal feature in protein stability. MD simulations with a coarse-grained protein model show that the folding of pG is two-state, consistent with experimental observations. In contrast, the folding free energy surface of a coarse-grained model of pB involves an on-pathway partially unfolded intermediate that closely matches experimental data. The results reveal that interactions between the pCA and its binding pocket can switch the energy landscape for PYP from two- to three-state folding, and show how this can be exploited to trigger large functionally important protein conformational changes.

Rainfall simulation experiments in ecological and conventional vineyards.

NASA Astrophysics Data System (ADS)

Adrian, Alexander; Brings, Christine; Rodrigo Comino, Jesús; Iserloh, Thomas; Ries, Johannes B.

2015-04-01

In October 2014, the Trier University started a measurement series, which defines, compares and evaluates the behavior of runoff and soil erosion with different farming productions in vineyards. The research area is located in Kanzem, a traditional wine village in the Saar Valley (Rheinland-Palatinate, Germany). The test fields show different cultivation methods: ecological (with natural vegetation cover under and around the vines) and conventional cultivated rows of wine. By using the small portable rainfall simulator of Trier University it shall be proved if the assumption that there is more runoff and soil erosion in the conventional part than in the ecological part of the tillage system. Rainfall simulations assess the generation of overland flow, soil erosion and infiltration. So, a trend of soil erosion and runoff of the different cultivation techniques are noted. The objective of this work is to compare the geomorphological dynamics of two different tillage systems. Therefore, 30 rainfall simulations plots were evenly distributed on a west exposition hillside with different slope angels (8-25°), vegetation- and stone-covers. In concrete, the plot surface reaches from strongly covered soil across lithoidal surfaces to bare soil often with compacted lanes of typical using machines. In addition, by using the collected substrate, an estimation and distribution of the grain size of the eroded material shall be given. The eroded substrate is compared to soil samples of the test plots. The first results have shown that there is slightly more runoff and soil erosion in the ecological area than on the conventional part of the vineyard.

Current levels and trends of selected EU Water Framework Directive priority substances in freshwater fish from the German environmental specimen bank.

PubMed

Fliedner, Annette; Lohmann, Nina; Rüdel, Heinz; Teubner, Diana; Wellmitz, Jörg; Koschorreck, Jan

2016-09-01

Under the German environmental specimen bank programme bream (Abramis brama) were sampled in six German rivers and analysed for the priority hazardous substances dicofol, hexabromocyclododecane (HBCDD), hexachlorobenzene (HCB), hexachlorobutadiene (HCBD), heptachlor + heptachlor epoxide (HC + HCE), polybrominated diphenylethers (PBDEs), polychlorinated dibenzo-p-dioxins and -furans and dioxin-like polychlorinated biphenyls (PCDD/Fs + dl-PCBs), and perfluorooctane sulfonic acid (PFOS). The aim was to assess compliance with the EU Water Framework Directive environmental quality standards for biota (EQSBiota) for the year 2013, and to analyse temporal trends for those substances that are of special concern. General compliance was observed for dicofol, HBCDD and HCBD whereas PBDEs exceeded the EQSBiota at all sites. For all other substances compliance in 2013 varied between locations. No assessment was possible for HC + HCE at some sites where the analytical sensitivity was not sufficient to cover the EQSBiota. Trend analysis showed decreasing linear trends for HCB and PFOS at most sampling sites between 1995 and 2014 indicating that the emission reduction measures are effective. Mostly decreasing trends or constant levels were also observed for PCDD/Fs and dl-PCBs. In contrast, increasing trends were detected for PBDEs and HBCDD which were especially pronounced at one Saar site located downstream of the industries and conurbation of Saarbrücken and Völklingen. This finding points to new sources of emissions which should be followed in the coming years. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Pre-Alpine (Variscan) Inheritance: A Key for the Location of the Future Valaisan Basin (Western Alps)

NASA Astrophysics Data System (ADS)

Ballèvre, M.; Manzotti, P.; Dal Piaz, G. V.

2018-03-01

The boundary between the Helvetic and the Penninic (=Briançonnais) Zones has long been recognized as a major fault ("Penninic Front") in the Western Alps. A narrow oceanic domain has been postulated at least along part of this boundary (the Valaisan Basin). However, the information provided by the pre-Triassic basement has not been fully exploited and will be discussed here in detail. The igneous and metamorphic history of the pre-Triassic basement shows significant differences between the External Massifs from the Helvetic Zone, with abundant Late Carboniferous granites, and the basement of the Briançonnais Zone, including the Internal Massifs (Dora-Maira, Gran Paradiso, and Monte Rosa), devoid of Carboniferous granites. A major coal-bearing basin, the "Zone Houillère," opened along this boundary. This limnic intramontane basin has never been properly investigated. The Zone Houillère is not comparable with the external, paralic, flexural, basins on both sides of the Variscan belt but shows similarities with the Saar-Saale Basin. Like the latter, we interpret the Zone Houillère as a transtensional basin opened along a major, crustal-scale, fault zone, namely, the East Variscan Shear Zone. The Permian magmatism and sedimentation displays contrasting distributions, being absent or very localized in the Helvetic Zone, and widespread in the Penninic Zone. The above data indicate that the structural inheritance from the Variscan belt plays a major role in defining the future location of the Valaisan Basin, that is, the boundary between the European paleomargin and the Briançonnais microcontinent.

Searching for Planets in the Hyades. V. Limits on Planet Detection in the Presence of Stellar Activity

NASA Astrophysics Data System (ADS)

Paulson, Diane B.; Cochran, William D.; Hatzes, Artie P.

2004-06-01

We present the results of a radial velocity survey of a sample of Hyades stars and discuss the effects of stellar activity on radial velocity measurements. The level of radial velocity scatter due to rotational modulation of stellar surface features for the Hyades is in agreement with the 1997 predictions of Saar & Donahue-the maximum radial velocity rms of up to ~50 m s-1, with an average rms of ~16 m s-1. In this sample of 94 stars we find one new binary, two stars with linear trends indicative of binary companions, and no close-in giant planets. We discuss the limits on extrasolar planet detection in the Hyades and the constraints imposed on radial velocity surveys of young stars. Some of the data presented herein were obtained at the W. M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California, and the National Aeronautics and Space Administration (NASA). The Observatory was made possible by the generous financial support of the W. M. Keck Foundation. The authors wish to recognize and acknowledge the very significant cultural role and reverence that the summit of Mauna Kea has always had within the indigenous Hawaiian community. We are most fortunate to have the opportunity to conduct observations from this mountain. Additional data were obtained with the Hobby-Eberly Telescope, which is operated by McDonald Observatory on behalf of the University of Texas at Austin, the Pennsylvania State University, Stanford University, Ludwig-Maximilians-Universität München, and Georg-August-Universität Göttingen.

Two-Stage, Integrated, Geothermal-CO2 Storage Reservoirs: An Approach for Sustainable Energy Production, CO2-Sequestration Security, and Reduced Environmental Risk

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buscheck, T A; Chen, M; Sun, Y

2012-02-02

We introduce a hybrid two-stage energy-recovery approach to sequester CO{sub 2} and produce geothermal energy at low environmental risk and low cost by integrating geothermal production with CO{sub 2} capture and sequestration (CCS) in saline, sedimentary formations. Our approach combines the benefits of the approach proposed by Buscheck et al. (2011b), which uses brine as the working fluid, with those of the approach first suggested by Brown (2000) and analyzed by Pruess (2006), using CO{sub 2} as the working fluid, and then extended to saline-formation CCS by Randolph and Saar (2011a). During stage one of our hybrid approach, formation brine,more » which is extracted to provide pressure relief for CO{sub 2} injection, is the working fluid for energy recovery. Produced brine is applied to a consumptive beneficial use: feedstock for fresh water production through desalination, saline cooling water, or make-up water to be injected into a neighboring reservoir operation, such as in Enhanced Geothermal Systems (EGS), where there is often a shortage of a working fluid. For stage one, it is important to find economically feasible disposition options to reduce the volume of brine requiring reinjection in the integrated geothermal-CCS reservoir (Buscheck et al. 2012a). During stage two, which begins as CO{sub 2} reaches the production wells; coproduced brine and CO{sub 2} are the working fluids. We present preliminary reservoir engineering analyses of this approach, using a simple conceptual model of a homogeneous, permeable CO{sub 2} storage formation/geothermal reservoir, bounded by relatively impermeable sealing units. We assess both the CO{sub 2} sequestration capacity and geothermal energy production potential as a function of well spacing between CO{sub 2} injectors and brine/CO{sub 2} producers for various well patterns and for a range of subsurface conditions.« less

[Growth Factors and Interleukins in Amniotic Membrane Tissue Homogenate].

PubMed

Stachon, T; Bischoff, M; Seitz, B; Huber, M; Zawada, M; Langenbucher, A; Szentmáry, N

2015-07-01

Application of amniotic membrane homogenate eye drops may be a potential treatment alternative for therapy resistant corneal epithelial defects. The purpose of this study was to determine the concentrations of epidermal growth factor (EGF), fibroblast growth factor basic (bFGF), hepatocyte growth factor (HGF), keratinocyte growth factor (KGF), interleukin-6 (IL-6) and interleukin-8 (IL-8) in amniotic membrane homogenates. Amniotic membranes of 8 placentas were prepared and thereafter stored at - 80 °C using the standard methods of the LIONS Cornea Bank Saar-Lor-Lux, Trier/Westpfalz. Following defreezing, amniotic membranes were cut in two pieces and homogenized in liquid nitrogen. One part of the homogenate was prepared in cell-lysis buffer, the other part was prepared in PBS. The tissue homogenates were stored at - 20 °C until enzyme-linked immunosorbent assay (ELISA) analysis for EGF, bFGF, HGF, KGF, IL-6 and IL-8 concentrations. Concentrations of KGF, IL-6 and IL-8 were below the detection limit using both preparation techniques. The EGF concentration in tissue homogenates treated with cell-lysis buffer (2412 pg/g tissue) was not significantly different compared to that of tissue homogenates treated with PBS (1586 pg/g tissue, p = 0.72). bFGF release was also not significantly different using cell-lysis buffer (3606 pg/g tissue) or PBS treated tissue homogenates (4649 pg/g tissue, p = 0.35). HGF release was significantly lower using cell-lysis buffer (23,555 pg/g tissue), compared to PBS treated tissue (47,766 pg/g tissue, p = 0.007). Containing EGF, bFGF and HGF, and lacking IL-6 and IL-8, the application of amniotic membrane homogenate eye drops may be a potential treatment alternative for therapy-resistant corneal epithelial defects. Georg Thieme Verlag KG Stuttgart · New York.

The effect of pentadecapeptide BPC 157, H2-blockers, omeprazole and sucralfate on new vessels and new granulation tissue formation.

PubMed

Sikiric, P; Separovic, J; Anic, T; Buljat, G; Mikus, D; Seiwerth, S; Grabarevic, Z; Stancic-Rokotov, D; Pigac, B; Hanzevacki, M; Marovic, A; Rucman, R; Petek, M; Zoricic, I; Ziger, T; Aralica, G; Konjevoda, P; Prkacin, I; Gjurasin, M; Miklic, P; Artukovic, B; Tisljar, M; Bratulic, M; Mise, S; Rotkvic, I

1999-12-01

A clear protection of the gastrointestinal tract and an evident anti-inflammatory effect were shown for a novel stomach pentadecapeptide BPC 157 (i.p./i.g.) in comparison with several reference standards in various ulcer models along with a protection of endothelium and particular interaction with the NO-system. Thus, we evaluated whether this pentadecapeptide along with other gastroprotective agents could affect angiogenesis and the healing process in vivo using a procedure initially described by Szabo and co-workers. In each rat, two sterile sponges (1 x 1 x 0.25 cm; V = 0.25 mL) with the same quantities of BPC 157 (10 ng x mL(-1), 10 microg x mL(-1), 50 microg x kg(-1)) or reference agents (cimetidine: 10, 100, 500 mg x mL(-1); ranitidine: 2.5, 25, 250 mg x mL(-1); famotidine: 10, 50, 100 mg x mL(-1); omeprazole: 10, 50, 100 mg x mL(-1); sucralfate: 1, 5, 10 mg x mL(-1) were implanted subcutaneously in the lumbar region. The sponges were removed after 3 or 7 d, fixed in formalin, and processed for histologic and histochemical evaluation and morphometry assessment. Compared with the control values, the number of newly formed endothelial spaces inside newly formed granulation tissue was markedly increased in all animals treated with BPC 157, cimetidine, ranitidine, famotidine, sucralfate and omeprazole, a consistent finding noted after either 3 or 7 d. Compared with control values, markedly more granulation tissue was noted in the rats in the groups of animals treated with BPC 157 (50 microg) and in the rats treated with sucralfate in all dosages used, euthanized after 3 d. In all groups treated with H2-blockers however, similar values to those of controls were noted. Thus, it could be concluded that an evident angiogenic property was consistently noted for the novel pentadecapeptide BPC 157, H2-blockers (cimetidine, famotidine and ranitidine) and omeprazole, besides the well known angiogenic effect of sucralfate. Furthermore, unlike H2-blockers and omeprazole

A Symplectic Instanton Homology via Traceless Character Varieties

NASA Astrophysics Data System (ADS)

Horton, Henry T.

Since its inception, Floer homology has been an important tool in low-dimensional topology. Floer theoretic invariants of 3-manifolds tend to be either gauge theoretic or symplecto-geometric in nature, and there is a general philosophy that each gauge theoretic Floer homology should have a corresponding symplectic Floer homology and vice-versa. In this thesis, we construct a Lagrangian Floer invariant for any closed, oriented 3-manifold Y (called the symplectic instanton homology of Y and denoted SI(Y)) which is conjecturally equivalent to a Floer homology defined using a certain variant of Yang-Mills gauge theory. The crucial ingredient for defining SI( Y) is the use of traceless character varieties in the symplectic setting, which allow us to avoid the debilitating technical hurdles present when one attempts to define a symplectic version of instanton Floer homologies. Floer theories are also expected to roughly satisfy the axioms of a topological quantum field theory (TQFT), and furthermore Dehn surgeries on knots should induce exact triangles of Floer homologies. Following a strategy used by Ozsvath and Szabo in the context of Heegaard Floer homology, we prove that our theory is functorial with respect to connected 4-dimensional cobordisms, so that cobordisms induce homomorphisms between symplectic instanton homologies. By studying the effect of Dehn surgeries on traceless character varieties, we establish a surgery exact triangle using work of Seidel that relates the geometry of Lefschetz fibrations with exact triangles in Lagrangian Floer theory. We further prove that Dehn surgeries on a link L in a 3-manifold Y induce a spectral sequence of symplectic instanton homologies - the E2-page is isomorphic to a direct sum of symplectic instanton homologies of all possible combinations of 0- and 1-surgeries on the components of L, and the spectral sequence converges to SI(Y). For the branched double cover Sigma(L) of a link L in S3, we show there is a link surgery

Extracting rate coefficients from single-molecule photon trajectories and FRET efficiency histograms for a fast-folding protein.

PubMed

Chung, Hoi Sung; Gopich, Irina V; McHale, Kevin; Cellmer, Troy; Louis, John M; Eaton, William A

2011-04-28

Recently developed statistical methods by Gopich and Szabo were used to extract folding and unfolding rate coefficients from single-molecule Förster resonance energy transfer (FRET) data for proteins with kinetics too fast to measure waiting time distributions. Two types of experiments and two different analyses were performed. In one experiment bursts of photons were collected from donor and acceptor fluorophores attached to a 73-residue protein, α(3)D, freely diffusing through the illuminated volume of a confocal microscope system. In the second, the protein was immobilized by linkage to a surface, and photons were collected until one of the fluorophores bleached. Folding and unfolding rate coefficients and mean FRET efficiencies for the folded and unfolded subpopulations were obtained from a photon by photon analysis of the trajectories using a maximum likelihood method. The ability of the method to describe the data in terms of a two-state model was checked by recoloring the photon trajectories with the extracted parameters and comparing the calculated FRET efficiency histograms with the measured histograms. The sum of the rate coefficients for the two-state model agreed to within 30% with the relaxation rate obtained from the decay of the donor-acceptor cross-correlation function, confirming the high accuracy of the method. Interestingly, apparently reliable rate coefficients could be extracted using the maximum likelihood method, even at low (<10%) population of the minor component where the cross-correlation function was too noisy to obtain any useful information. The rate coefficients and mean FRET efficiencies were also obtained in an approximate procedure by simply fitting the FRET efficiency histograms, calculated by binning the donor and acceptor photons, with a sum of three-Gaussian functions. The kinetics are exposed in these histograms by the growth of a FRET efficiency peak at values intermediate between the folded and unfolded peaks as the bin

Bingham fluid behavior of plagioclase-bearing basaltic magma: Approach from laboratory viscosity measurements

NASA Astrophysics Data System (ADS)

Ishibashi, H.; Sato, H.

2010-12-01

Datasets of one atmosphere high temperature rotational viscometry of the Fuji 1707 basalt (Ishibashi, 2009) were analyzed based on the Bingham fluid model, and both yield stress and Bingham viscosity were determined. Reproducibility of the dataset by the Bingham fluid model was slightly better than that by the power law fluid modes adopted in our previous study although both the fluid models well represent the dataset in practical perspective. The relation between Bingham viscosity and crystallinity was compared with the Krieger-Dougherty equation, and both the maximum packing fraction of crystals and intrinsic viscosity for Bingham viscosity were determined ca. 0.45 and ca. 5.25, respectively, revealing that the maximum packing fraction decreased and intrinsic viscosity increased concomitantly with the increase in shape-anisotropy of crystals. However, the obtained value of the product of the maximum packing fraction and intrinsic viscosity (= ca. 2.36) was similar to that of uniform, isotropic-shaped particles (= 2.5), indicating that the effect of crystal shape-anisotropy on Bingham viscosity might be predicted only by change of the maximum packing fraction. Finite yield stress was detected for crystallinity larger than 0.133; it increased with crystallinity which suggests that critical crystallinity for onset of yield stress is at least lower than 0.133. The upper limit value of the critical crystallinity resembles the value calculated numerically for randomly oriented uniform particles by Saar et al. (2001) (0.10-0.15 for width/length ratio of 0.1-0.2, which is similar to the ratios in the basalt) whereas crystals in the basalt were moderately parallel arranged and their sizes vary significantly. That fact might be explained as follows; effects of parallel arrangement and size variation of crystals on the critical crystallinity are offset by the effect of variation in crystal shape-anisotropy, which suggests that shape-anisotropy distribution of crystals must

Biostereometrics In Art

NASA Astrophysics Data System (ADS)

Ferenc, Kovats

1986-07-01

Desuis mon enfance je suis un type soidisant visuel. Cette deviation etait toujours profitable pour moi, pour le clinicien , ainsi que pour le rechercheur scientifique.I1 y a trente ans, que dans l'Atlas Radioanatomique du Thorax nous avons deja utilis6 la conception de trois dimensions. Dans les derni6res edition de cet ouvrage nous avons travaille mke avec la guatrieme, le temps facteur. DePuis cette 6poque-la je me suis ori-en-be vers les quatre dimensions, vers les mouvements dans l'espace et le temps. -:tudiant les mouvements,les mouvements ventilatoires mesure par photogrammetrie le tronc humain.En projetant sur la surface du tronc un reseau quadratique, on pent compter de 3oo-400 points d'information, si un carre est 2 This 2 cm. Simultanement on pent ainsi contraler les deplacement relatifs des differents points. Travaillant avec seriophotographie et ces dernieres annees avec Video, nous avons des documents cDntinuellement en trois dimensions sun la position actuelle en espace de notre modele.On pent mesurer, reproduire la position momentan6e du sujet d'une frequence et dans la quantite desiree. Par exemple on peut les reproduire, une a une, comme une sculpture, en domontrant les changements d'un tronc humain pendant les mouvements respiratoires, comme nous avions fait en 1969 avec le sculpteur Istvan Bencsik en realisant nos differents modeles en inspiration et expiration.flais thooriquement on pent construire tant de sculptures qu'on vent entre les deux positions extremes.La methode est tres utilisable pour l'observation des mouvements sportifs on artistiques, comme le ballet par exemple. / Figure 1./ En etudiant en plusieures series la morphometrie des mouvements respiratoires on pent acquerir une certain experience, qui concerne la phase de respiration, on se trouve un corps humain sculpte, dessine on peint. Come le mimique d'un visage explkue toujours l'6tat affectif d'un individu, le corps humain peut expliquer tart des chases entre les mains d

Serum Metabolomic Profiles in Neonatal Mice following Oral Brominated Flame Retardant Exposures to Hexabromocyclododecane (HBCD) Alpha, Gamma, and Commercial Mixture

PubMed Central

Szabo, David T.; Pathmasiri, Wimal; Sumner, Susan; Birnbaum, Linda S.

2016-01-01

�-HBCD exposure, respectively. Conclusions: We demonstrated that 4 days following a single neonatal oral exposure to α-, γ-, and CM-HBCD resulted in different serum metabolomic profiles, indicating stereoisomer- and mixture-specific effects and possible mechanisms of action. Citation: Szabo DT, Pathmasiri W, Sumner S, Birnbaum LS. 2017. Serum metabolomic profiles in neonatal mice following oral brominated flame retardant exposures to hexabromocyclododecane (HBCD) alpha, gamma, and commercial mixture. Environ Health Perspect 125:651–659; http://dx.doi.org/10.1289/EHP242 PMID:27814246

Aerosol source apportionment based on multi-wavelength photoacoustic light absorption measurements: a simulation method for system's optimisation

NASA Astrophysics Data System (ADS)

Simon, Károly; Ajtai, Tibor; Kiss-Albert, Gergely; Utry, Noémi; Pintér, Máté; Szabó, Gábor; Bozóki, Zoltán

2017-04-01

, 3640-3644. Favez, O.; El Haddad, I.; Piot, C.; Boréave, A.; Abidi, E.; Marchand, N.; Jaffrezo, J. L.; Besombes, J. L.; Personnaz, M. B.; Sciare, J.; Wortham, H.; George, C. and D'Anna, B. (2010), Atmos. Chem. Phys. 10, 5295-5314. Simon, K.A.; Ajtai, T; Gulyas, G; Utry, N; Pinter, M; Szabo, G. and Bozoki, Bozoki, Z. (2017), Journal of Aerosol Science 104, 10-15.

Observing Coronal Mass Ejections from the Sun-Earth L5 Point

NASA Astrophysics Data System (ADS)

Gopalswamy, N.; Davila, J. M.; St Cyr, O. C.

2013-12-01

Coronal mass ejections (CMEs) are the most energetic phenomenon in the heliosphere and are known to be responsible for severe space weather. Most of the current knowledge on CMEs accumulated over the past few decades has been derived from observations made from the Sun-Earth line, which is not the ideal vantage point to observe Earth-affecting CMEs (Gopalswamy et al., 2011a,b). The STEREO mission viewed CMEs from points away from the Sun-Earth line and demonstrated the importance of such observations in understanding the three-dimensional structure of CMEs and their true kinematics. In this paper, we show that it is advantageous to observe CMEs from the Sun-Earth L5 point in studying CMEs that affect Earth. In particular, these observations are important in identifying that part of the CME that is likely to arrive at Earth. L5 observations are critical for several aspects of CME studies such as: (i) they can also provide near-Sun space speed of CMEs, which is an important input for modeling Earth-arriving CMEs, (ii) backside and frontside CMEs can be readily distinguished even without inner coronal imagers, and (iii) preceding CMEs in the path of Earth-affecting CMEs can be identified for a better estimate of the travel time, which may not be possible from the Sun-Earth line. We also discuss how the L5 vantage point compares with the Sun-Earth L4 point for observing Earth-affecting CMEs. References Gopalswamy, N., Davila, J. M., St. Cyr, O. C., Sittler, E. C., Auchère, F., Duvall, T. L., Hoeksema, J. T., Maksimovic, M., MacDowall, R. J., Szabo, A., Collier, M. R. (2011a), Earth-Affecting Solar Causes Observatory (EASCO): A potential International Living with a Star Mission from Sun-Earth L5 JASTP 73, 658-663, DOI: 10.1016/j.jastp.2011.01.013 Gopalswamy, N., Davila, J. M., Auchère, F., Schou, J., Korendyke, C. M. Shih, A., Johnston, J. C., MacDowall, R. J., Maksimovic, M., Sittler, E., et al. (2011b), Earth-Affecting Solar Causes Observatory (EASCO): a mission at

Lost in the Dark: A proto-history of dark matter

NASA Astrophysics Data System (ADS)

Trimble, Virginia L.; History 1

2016-01-01

Einasto, Kaasik, and Saar (published in Nature, in case you are thinking of more Meddelande). I feel enormous respect and affection for Vera Rubin and Fritz Zwicky, but the published papers as are they are.

[Correlation between microbial growth in conjunctival swabs of corneal donors and contamination of organ culture media].

PubMed

Li, S; Bischoff, M; Schirra, F; Langenbucher, A; Ong, M; Halfmann, A; Herrmann, M; Seitz, B

2014-06-01

The aim of the study was to determine the rate of contamination in conjunctival swabs from corneal donors by microbiological investigations and to correlate this with microbial contamination of the culture medium. Contamination of conjunctival swabs and culture media was analyzed retrospectively for the years 2009, 2010 and 2011 at the LIONS corneal bank of Saar-Lor-Lux Trier/Westpfalz at the Saarland University Medical Center. The total annual number of conjunctival swabs was 316 in 2009, 341 in 2010 and 381 in 2011. Conjunctival swabs were taken prior to 1.25% povidone-iodine application. After disinfection donor corneas were harvested by in situ corneoscleral disc excision in all cases. The correlation between positive conjunctival swabs and microbial contamination of the culture medium was analyzed. In every year examined the contamination rate of the culture medium was significantly higher in cases of contaminated conjunctival swabs (p < 0.05 in 2009, p < 0.001 in 2010 and p = 0.004 in 2011). Of the conjunctival swabs 38.3% (2009), 53.7% (2010) and 55.6% (2011), respectively exhibited microbial growth. The principal microorganisms detected in the conjunctival swabs were coagulase negative staphylococci, gram negative rods and Staphylococcus aureus. Extending the exposure time to povidone-iodine prior to removal of the corneoscleral disc from 3 min in the year 2009 to 5 min since the year 2010 resulted in a highly statistically significant (p < 0.001) reduction in contamination frequency of the medium from 10.8% (2009) to 7.0% (2010) and 4.5% (2011) was observed. In 2009, 2010 and 2011 the culture medium was contaminated in 16.5%, 11.5% and 7.6% of the donated corneas with positive conjunctival swabs and in 7.2%, 1.9% and 0.6% in donated corneas with negative conjunctival swabs, respectively. A positive correlation was found between contamination of the culture medium and microbial colonization of the conjunctival swabs, Nevertheless, microbial colonization of

Modifications of transaxillary approach in endoscopic da Vinci-assisted thyroid and parathyroid gland surgery.

PubMed

Al Kadah, Basel; Piccoli, Micaela; Mullineris, Barbara; Colli, Giovanni; Janssen, Martin; Siemer, Stephan; Schick, Bernhard

2015-03-01

Endoscopic surgery for treatment of thyroid and parathyroid pathologies is increasingly gaining attention. The da Vinci system has already been widely used in different fields of medicine and quite recently in thyroid and parathyroid surgery. Herein, we report about modifications of the transaxillary approach in endoscopic surgery of thyroid and parathyroid gland pathologies using the da Vinci system. 16 patients suffering from struma nodosa in 14 cases and parathyroid adenomas in two cases were treated using the da Vinci system at the ENT Department of Homburg/Saar University and in cooperation with the Department of General Surgery in New Sant'Agostino Hospital, Modena/Italy. Two different retractors, endoscopic preparation of the access and three different incision modalities were used. The endoscopic preparation of the access allowed us to have a better view during preparation and reduced surgical time compared to the use of a headlamp. To introduce the da Vinci instruments at the end of the access preparation, the skin incisions were over the axilla with one incision in eight patients, two incisions in four patients and three incisions in a further four patients. The two and three skin incisions modality allowed introduction of the da Vinci instruments without arm conflicts. The use of a new retractor (Modena retractor) compared to a self-developed retractor made it easier during the endoscopic preparation of the access and the reposition of the retractor. The scar was hidden in the axilla and independent of the incisions selected, the cosmetic findings were judged by the patients to be excellent. The neurovascular structures such as inferior laryngeal nerve, superior laryngeal nerve and vessels, as well as the different pathologies, were clearly 3D visualized in all 16 cases. No paralysis of the vocal cord was observed. All patients had a benign pathology in their histological examination. The endoscopic surgery of the thyroid and parathyroid gland can be

A new setup for experimental investigations of solar wind sputtering

NASA Astrophysics Data System (ADS)

Szabo, Paul S.; Berger, Bernhard M.; Chiba, Rimpei; Stadlmayr, Reinhard; Aumayr, Friedrich

2017-04-01

obtained simultaneously. The results coincide very well with SDTrimSP predictions showing the feasibility of the new design [4]. Furthermore, Fe-coated QCM targets with different surface roughness were investigated in the new setup. The surface roughness represents a key factor for the solar wind induced erosion of planetary or lunar rocks. It has a strong influence on the absolute sputtering yield as well as on the spatial distribution of sputtered particles and was therefore investigated. As a next step, sputtering experiments with Mercury or Moon analogues will be conducted. Knowledge gained in the course of this research will enhance the understanding of surface sputtering by solar wind ions and used to improve theoretical models of the Mercury's and Moon's exosphere formation. References: [1] E. Kallio, et al., Planetary and Space Science, 56, 1506 (2008). [2] G. Hayderer, et al., Review of Scientific Instruments, 70, 3696 (1999). [3] A. Mutzke, R. Schneider, W. Eckstein, R. Dohmen, SDTrimSP: Version 5.00, IPP Report, 12/8, (2011). [4] B. M. Berger, P. S. Szabo, R. Stadlmayr, F. Aumayr, Nucl. Instrum. Meth. Phys. Res. B, doi: 10.1016/j.nimb.2016.11.039

PREFACE: 13th International Conference on Electrostatics

NASA Astrophysics Data System (ADS)

Taylor, D. Martin

2011-06-01

Electrostatics 2011 was held in the city of Bangor which is located in North West Wales in an area of outstanding natural beauty close to the Snowdonia mountain range and bordering the Irish Sea. The history of the area goes back into the mists of times, but a continuous technological thread can be traced from the stone- and bronze-age craftsmen, who inhabited the area several thousand years ago, via the civil engineering and fortifications of the Romans and Edward I of England, through Marconi's long-wave trans-Atlantic transmitter near Caernarfon to the conference host. The School of Electronic Engineering at Bangor University has contributed much to the discipline of Electrostatics not only in teaching and research but also in supporting industry. It was a great pleasure for me, therefore, to have the pleasure of welcoming the world's experts in Electrostatics to Bangor in April 2011. In my preface to the Proceedings of Electrostatics 1999, I reported that almost 90 papers were presented. Interestingly, a similar number were presented in 2011 testifying to the importance and endurance of the subject. The all-embracing nature of electrostatics is captured in the pictorial depiction used for the conference logo: a hand-held plasma ball with its close link to gaseous discharges and the superimposed Antarctic aurora highlighting the featured conference themes of atmospheric, planetary and environmental electrostatics. Leading these themes were three invited contributions, the first by Giles Harrison who delivered the Bill Bright Memorial Lecture 'Fair weather atmospheric electricity', Carlos Calle on 'The electrostatic environments of Mars and the Moon' and Istvan Berta on 'Lightning protection - challenges, solutions and questionable steps in the 21st century'. Leading other key sessions were invited papers by Atsushi Ohsawa on 'Statistical analysis of fires and explosions attributed to static electricity over the last 50 years in Japanese industry' and Antonio

[Chance meeting of psychiatry and art on the "dissecting table"].

PubMed

Perenyei, Monika

2015-01-01

registered in the official list of museums in 1932. In the 1930s Istvan Zsako the physician director of Angyalfold Asylum took care of the collection. He enriched it with further historical documents on the institution, bibliographies, press cuts, tableaux and photographic albums referring to the institution and the research practiceses of the physicians. After Zsako was appointed the director of Lipotmezo the collections of Lipotmezo and Angyalfold were joined. The collection suffered during the World War II and this period is can be viewed as a caesura in the practice of collecting. Later, from the late fifties, the physician Fekete Janos, head of the nurse training in Lipotmezo was in charge of the collection. He focused on sorting and installation of the remnants and also collected new works of the inpatients. During the seventies the psychotherapy was inaugurated and in the eighties the art therapy exercises began. However, through the reconstruction of the therapeutical and collecting practices show that these evolving art therapy practices partly rooted in the work of psychiatric treatment in the twenties and thirties. Psychiatrists, who lived in the asylums too, supported the so called "noble entertainments" - including artistic drawing, painting, reading and playing musical instruments - and as a part of the daily routines of these mental institutions they formed a locally particular modus operandi of therapy. The inmates of the asylums, the physicians and patients cooperated to enrich the collection which was a venue to represent the life of the institution and to demonstrate the research of the physicians. Despite of the significant differences between the pre- and postwar periods concerning the sociocultural and political structures there is a well defined connection between "curing and curating".

Scleractinian corals from the upper Berriasian of central Europe and comparison with contemporaneous coral assemblages.

PubMed

Baron-Szabo, Rosemarie Christine

2018-02-22

), Myriophyllia cf. propria Sikharulidze, Paraclausastrea vorarlbergensis Baron-Szabo, Peplosmilia stutzi (Koby), Placocoenia heimi (Koby)(new combination), Placophyllia dianthus (Goldfuss), Plesiomontlivaltia paucisepta (Koby)(new combination), Pleurophyllia schmidti (Koby)(new combination), P. tobleri (Koby), Polyphylloseris icaunensis (d'Orbigny, 1850), Rhipidogyra cf. minima Koby, Stylangia cf. laddi Wells, Stylina pleionantha Meneghini, S. decipiens Étallon, S. cf. sparsa Trautschold, Stylosmilia alpina Koby, S. yabei Eguchi, Thecosmilia dichotoma (Koby), Th. sp., Trigerastraea gourdani (De Fromentel), and Vallimeandra cf. explanata (De Fromentel). Furthermore, five additional Berriasian coral faunas are reviewed and compared with the coral fauna of the upper Oehrli Formation. These five assemblages are from southern Ukraine (2 assemblages, consisting of five and 12 species, respectively), northern Tunisia (13 species), southern Spain (23 species), and central Tibet (11 species). Except for the faunas from central Tibet and northern Tunisia, the Berriasian coral assemblages are distinctly dominated by colonial species (70-95%); they represent largely isolated populations of mostly endemic species; and consist largely of genera that had already appeared in the Upper Jurassic (80-100%). On the species-level, however, with the exception of the coral assemblage of Spain, the Beriasian coral faunas are dominated by or completely consist of taxa that have their first occurrence in the Berriasian (54-100%). The Berriasian fauna of the upper Oehrli Formation described in this work contains nearly three times more species than found in the contemporaneous fauna of southern Spain which up to now was the largest known Berriasian fauna. Two of the upper Berriasian taxa described in the current work (Cycloria and Placocoenia) may be the first representatives of lineages that still occur today (Mussidae and Montastraeidae, respectively) as suggested by a recent study of the cox1 Intron

Outcrop analogue study of Permocarboniferous geothermal sandstone reservoir formations (northern Upper Rhine Graben, Germany): impact of mineral content, depositional environment and diagenesis on petrophysical properties

NASA Astrophysics Data System (ADS)

Aretz, Achim; Bär, Kristian; Götz, Annette E.; Sass, Ingo

2016-07-01

The Permocarboniferous siliciclastic formations represent the largest hydrothermal reservoir in the northern Upper Rhine Graben in SW Germany and have so far been investigated in large-scale studies only. The Cenozoic Upper Rhine Graben crosses the Permocarboniferous Saar-Nahe Basin, a Variscan intramontane molasse basin. Due to the subsidence in this graben structure, the top of the up to 2-km-thick Permocarboniferous is located at a depth of 600-2900 m and is overlain by Tertiary and Quaternary sediments. At this depth, the reservoir temperatures exceed 150 °C, which are sufficient for geothermal electricity generation with binary power plants. To further assess the potential of this geothermal reservoir, detailed information on thermophysical and hydraulic properties of the different lithostratigraphical units and their depositional environment is essential. Here, we present an integrated study of outcrop analogues and drill core material. In total, 850 outcrop samples were analyzed, measuring porosity, permeability, thermal conductivity and thermal diffusivity. Furthermore, 62 plugs were taken from drillings that encountered or intersected the Permocarboniferous at depths between 1800 and 2900 m. Petrographic analysis of 155 thin sections of outcrop samples and samples taken from reservoir depth was conducted to quantify the mineral composition, sorting and rounding of grains and the kind of cementation. Its influence on porosity, permeability, the degree of compaction and illitization was quantified. Three parameters influencing the reservoir properties of the Permocarboniferous were detected. The strongest and most destructive influence on reservoir quality is related to late diagenetic processes. An illitic and kaolinitic cementation and impregnation of bitumina document CO2- and CH4-rich acidic pore water conditions, which are interpreted as fluids that migrated along a hydraulic contact from an underlying Carboniferous hydrocarbon source rock. Migrating

Contrasting Permo - Carboniferous Evolution of Resita and Sirinia - Presacina Basins (South Carpathians, Romania); an overview.

NASA Astrophysics Data System (ADS)

Tatu, M.; Seghedi, I.; Nutu, L. M.; Nicolae, I.

2009-04-01

- sinistral shear fault system adjacent to the Tornquist - Teisseyre Line, which induced the fragmentation of Variscan fold belt. With this process was associated the formation of many transtensional pull-apart continental - lacustrian sedimentary basins and intra-continental rifts in which or in adjacent areas the intrusive - extrusive magmatism was widespread and where the deep crustal fractures were active. From climatic point of view the main consequence of continue convergence between Laurasia and Gondwana is the transition from relatively wet regime during Stephanian to arid during the Permian induced by the elevation of the equatorial highlands Variscan fold belt was acted as a precipitation barrier for the whole territory located to the north. Tacking into account of all these aspects, the Resita domain presents the similarities in the lithological composition with Autun Basin and the Sirinia - Presacina zone displays many common features with Saar - Nahe and Thuringian Forest Basins and North German/Polish Depression. This work started during PALEOCLIM project (grant ANCS - PN2, 31-063/2007), which is gratefully acknowledged. References Nastaseanu S. 1987. In: Flügel E., Sassi F. & Grecula P. (eds): Pre-Variscan and Variscan events in the Alpine-Mediterranean mountain belts. - Mineralia Slovaca. Alfa Bratislava, 371-378. Stollhofen H., Frommherz B., Stanistreet I. G. 1999. J. Geol. Soc. London 156, 801-808. Ziegler P. A. 1990. Shell Int. Petrol. Mij. Dist. Geol. Soc. Publ. House, Bath, 1-239.

High energy neutrinos from astrophysical accelerators of cosmic ray nuclei

NASA Astrophysics Data System (ADS)

Anchordoqui, Luis A.; Hooper, Dan; Sarkar, Subir; Taylor, Andrew M.

2008-02-01

.W.SteckerC.DoneM.H.SalamonP.SommersPhys. Rev. Lett.6619912697(Erratum-ibid. 69 (1992) 2738)F.W.SteckerPhys. Rev. D722005107301A.AtoyanC.D.DermerPhys. Rev. Lett.872001221102L.A.AnchordoquiH.GoldbergF.HalzenT.J.WeilerPhys. Lett. B6002004202E.WaxmanJ.N.BahcallPhys. Rev. Lett.7819972292C.D.DermerA.AtoyanPhys. Rev. Lett.912003071102D.GuettaD.HooperJ.Alvarez-MunizF.HalzenE.ReuveniAstropart. Phys.202004429J.Alvarez-MunizF.HalzenD.W.HooperPhys. Rev. D622000093015A.LoebE.WaxmanJCAP06052006003S. Inoue, G. Sigl, F. Miniati, E. Armengaud, arXiv:astro-ph/0701167.E.WaxmanJ.N.BahcallPhys. Rev. D591999023002Phys. Rev. D642001023002K.MannheimR.J.ProtheroeJ.P.RachenPhys. Rev. D632001023003arXiv:astro-ph/9908031M.AhlersL.A.AnchordoquiH.GoldbergF.HalzenA.RingwaldT.J.WeilerPhys. Rev. D722005023001E.WaxmanAstrophys. J.4521995L1Note that the neutrino spectral shape can deviate from that for protons if the Feynman plateau is not flat in pseudo-rapidity space;L.AnchordoquiH.GoldbergC.NunezPhys. Rev. D712005065014This is in fact suggested by Tevatron data;F.AbeCDF CollaborationPhys. Rev. D4119902330J.G.LearnedS.PakvasaAstropart. Phys.31995267F.HalzenD.SaltzbergPhys. Rev. Lett.8119984305J.F.BeacomN.F.BellD.HooperS.PakvasaT.J.WeilerPhys. Rev. D682003093005(Erratum-ibid. D 72 (2005) 019901)L.A.AnchordoquiH.GoldbergF.HalzenT.J.WeilerPhys. Lett. B593200442L.A.AnchordoquiH.GoldbergF.HalzenT.J.WeilerPhys. Lett. B621200518A.M.HillasAnn. Rev. Astron. Astrophys.221984425For a general discussion on the acceleration time-scale in these sources see, e.g.,D.F.TorresL.A.AnchordoquiRep. Prog. Phys.6720041663M.C.BegelmanB.RudakM.SikoraAstrophys. J.362199038M.J.ChodorowskiA.A.ZdziarskiM.SikoraAstrophys. J.4001992181S.MichalowskiD.AndrewsJ.EickmeyerT.GentileN.MistryR.TalmanK.UenoPhys. Rev. Lett.391977737J.L.PugetF.W.SteckerJ.H.BredekampAstrophys. J.2051976638D.HooperS.SarkarA.M.TaylorAstropart. Phys.272007199The non-thermal energy release in GRBs is much smaller than that output by AGN.P.L.BiermannP.A.StrittmatterAstrophys. J.3221987643R.J.ProtheroeA.P.Szabo