­­Clastic Pipes on Mars: Evidence for a Near Surface Groundwater System

NASA Astrophysics Data System (ADS)

Wheatley, D. F.; Chan, M. A.; Okubo, C. H.

2017-12-01

Clastic pipes, a type of vertical, columnar injectite, occur throughout the terrestrial stratigraphic record and are identified across many Martian terrains. Terrestrial pipe analogs can aid in identifying clastic pipes on Mars to understand their formation processes and their implications for a past near-surface groundwater system. On Earth, clastic pipes form through fluidization of overpressurized sediment. Fluidization occurs when the upward frictional (i.e., drag) forces of escaping fluids overpower the downward acting gravitational force. To create the forces necessary for pipe formation requires overpressurization of a body of water-saturated porous media overlain by a low permeability confining layer. As the pressure builds, the confining layer eventually fractures and the escaping fluids fluidize the porous sediment causing the sediment to behave like a fluid. These specific formation conditions record evidence of a violent release of fluid-suspended sediment including brecciation of the host and sealing material, internal outward grading/sorting that results in a coarser-grained commonly better cemented outer rind, traction structures, and a cylindrical geometry. Pipes form self-organized, dispersed spatial relationships due to the efficient diffusion of overpressured zones in the subsurface and the expulsion of sediment under pressure. Martian pipes occur across the northern lowlands, dichotomy boundary, and southern highlands in various forms of erosional relief ranging from newer eruption structures to eroded cylindrical/conical mounds with raised rims to highly eroded mounds/hills. Similar to terrestrial examples, Martian pipes form in evenly-spaced, self-organized arrangements. The pipes are typically internally massive with a raised outer rim (interpreted as a sorted, coarser-grained, better-cemented rim). This evidence indicates that Martian pipes formed through fluidization, which requires a near-surface groundwater system. Pipes create a window into the subsurface by excavating subsurface sediment and waters. After emplacement, pipes can also act as fluid conduits, channeling post-depositional fluid flow. The preferential porosity and flow paths may make the pipes an ideal exploration target for microbial life.

Immunological techniques as tools to characterize the subsurface microbial community at a trichloroethylene contaminated site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fliermans, C.B.; Dougherty, J.M.; Franck, M.M.

Effective in situ bioremediation strategies require an understanding of the effects pollutants and remediation techniques have on subsurface microbial communities. Therefore, detailed characterization of a site`s microbial communities is important. Subsurface sediment borings and water samples were collected from a trichloroethylene (TCE) contaminated site, before and after horizontal well in situ air stripping and bioventing, as well as during methane injection for stimulation of methane-utilizing microorganisms. Subsamples were processed for heterotrophic plate counts, acridine orange direct counts (AODC), community diversity, direct fluorescent antibodies (DFA) enumeration for several nitrogen-transforming bacteria, and Biolog {reg_sign} evaluation of enzyme activity in collected water samples.more » Plate counts were higher in near-surface depths than in the vadose zone sediment samples. During the in situ air stripping and bioventing, counts increased at or near the saturated zone, remained elevated throughout the aquifer, but did not change significantly after the air stripping. Sporadic increases in plate counts at different depths as well as increased diversity appeared to be linked to differing lithologies. AODCs were orders of magnitude higher than plate counts and remained relatively constant with depth except for slight increases near the surface depths and the capillary fringe. Nitrogen-transforming bacteria, as measured by serospecific DFA, were greatly affected both by the in situ air stripping and the methane injection. Biolog{reg_sign} activity appeared to increase with subsurface stimulation both by air and methane. The complexity of subsurface systems makes the use of selective monitoring tools imperative.« less

Temperature and pressure adaptation of a sulfate reducer from the deep subsurface

PubMed Central

Fichtel, Katja; Logemann, Jörn; Fichtel, Jörg; Rullkötter, Jürgen; Cypionka, Heribert; Engelen, Bert

2015-01-01

Microbial life in deep marine subsurface faces increasing temperatures and hydrostatic pressure with depth. In this study, we have examined growth characteristics and temperature-related adaptation of the Desulfovibrio indonesiensis strain P23 to the in situ pressure of 30 MPa. The strain originates from the deep subsurface of the eastern flank of the Juan de Fuca Ridge (IODP Site U1301). The organism was isolated at 20°C and atmospheric pressure from ~61°C-warm sediments approximately 5 m above the sediment–basement interface. In comparison to standard laboratory conditions (20°C and 0.1 MPa), faster growth was recorded when incubated at in situ pressure and high temperature (45°C), while cell filamentation was induced by further compression. The maximum growth temperature shifted from 48°C at atmospheric pressure to 50°C under high-pressure conditions. Complementary cellular lipid analyses revealed a two-step response of membrane viscosity to increasing temperature with an exchange of unsaturated by saturated fatty acids and subsequent change from branched to unbranched alkyl moieties. While temperature had a stronger effect on the degree of fatty acid saturation and restructuring of main phospholipids, pressure mainly affected branching and length of side chains. The simultaneous decrease of temperature and pressure to ambient laboratory conditions allowed the cultivation of our moderately thermophilic strain. This may in turn be one key to a successful isolation of microorganisms from the deep subsurface adapted to high temperature and pressure. PMID:26500624

GPR studies over the tsunami affected Karaikal beach, Tamil Nadu, south India

NASA Astrophysics Data System (ADS)

Loveson, V. J.; Gujar, A. R.; Barnwal, R.; Khare, Richa; Rajamanickam, G. V.

2014-08-01

In this study, results of GPR profiling related to mapping of subsurface sedimentary layers at tsunami affected Karaikal beach are presented . A 400 MHz antenna was used for profiling along 262 m stretch of transect from beach to backshore areas with penetration of about 2.0 m depth (50 ns two-way travel time). The velocity analysis was carried out to estimate the depth information along the GPR profile. Based on the significant changes in the reflection amplitude, three different zones are marked and the upper zone is noticed with less moisture compared to other two (saturated) zones. The water table is noticed to vary from 0.5 to 0.75 m depth (12-15 ns) as moving away from the coastline. Buried erosional surface is observed at 1.5 m depth (40-42 ns), which represents the limit up to which the extreme event acted upon. In other words, it is the depth to which the tsunami sediments have been piled up to about 1.5 m thickness. Three field test pits were made along the transect and sedimentary sequences were recorded. The sand layers, especially, heavy mineral layers, recorded in the test pits indicate a positive correlation with the amplitude and velocity changes in the GPR profile. Such interpretation seems to be difficult in the middle zone due to its water saturation condition. But it is fairly clear in the lower zone located just below the erosional surface where the strata is comparatively more compact. The inferences from the GPR profile thus provide a lucid insight to the subsurface sediment sequences of the tsunami sediments in the Karaikal beach.

The role microbial sulfate reduction in the direct mediation of sedimentary authigenic carbonate precipitation

NASA Astrophysics Data System (ADS)

Turchyn, A. V.; Walker, K.; Sun, X.

2016-12-01

The majority of modern deep marine sediments are bathed in water that is undersaturated with respect to calcium carbonate. However, within marine sediments changing chemical conditions, driven largely by the microbial oxidation of organic carbon in the absence of oxygen, lead to supersaturated conditions and drive calcium carbonate precipitation. This sedimentary calcium carbonate is often called `authigenic carbonate', and is found in the form of cements and disseminated crystals within the marine sedimentary pile. As this precipitation of this calcium carbonate is microbially mediated, identifying authigenic carbonate within the geological record and understanding what information its geochemical and/or isotopic signature may hold is key for understanding its importance and what information it may contain past life. However, the modern controls on authigenic carbonate precipitation remain enigmatic because the myriad of microbially mediated reactions occurring within sediments both directly and indirectly impact the proton balance. In this submission we present data from 25 ocean sediment cores spanning the globe where we explore the deviation from the stoichiometrically predicted relationships among alkalinity, calcium and sulfate concentrations. In theory for every mol of organic carbon reduced by sulfate, two mol of alkalinity is produced, and to precipitate subsurface calcium carbonate one mol of calcium is used to consume two mol of alkalinity. We use this data with a model to explore changes in carbonate saturation state with depth below the seafloor. Alkalinity changes in the subsurface are poorly correlated with changes in calcium concentrations, however calcium concentrations are directly and tightly coupled to changes in sulfate concentrations in all studied sites. This suggests a direct role for sulfate reducing bacteria in the precipitation of subsurface carbonate cements.

Patterns and drivers of bacterial α- and β-diversity across vertical profiles from surface to subsurface sediments.

PubMed

Luna, Gian Marco; Corinaldesi, Cinzia; Rastelli, Eugenio; Danovaro, Roberto

2013-10-01

We investigated the patterns and drivers of bacterial α- and β-diversity, along with viral and prokaryotic abundance and the carbon production rates, in marine surface and subsurface sediments (down to 1 m depth) in two habitats: vegetated sediments (seagrass meadow) and non-vegetated sediments. Prokaryotic abundance and production decreased with depth in the sediment, but cell-specific production rates and the virus-to-prokaryote ratio increased, highlighting unexpectedly high activity in the subsurface. The highest diversity was observed in vegetated sediments. Bacterial β-diversity between sediment horizons was high, and only a minor number of taxa was shared between surface and subsurface layers. Viruses significantly contributed to explain α- and β-diversity patterns. Despite potential limitations due to the only use of fingerprinting techniques, this study indicates that the coastal subsurface host highly active and diversified bacterial assemblages, that subsurface cells are more active than expected and that viruses promote β-diversity and stimulate bacterial metabolism in subsurface layers. The limited number of taxa shared between habitats, and between surface and subsurface sediment horizons, suggests that future investigations of the shallow subsurface will provide insights into the census of bacterial diversity, and the comprehension of the patterns and drivers of prokaryotic diversity in marine ecosystems. © 2013 John Wiley & Sons Ltd and Society for Applied Microbiology.

Saturated CO2 inhibits microbial processes in CO2-vented deep-sea sediments

NASA Astrophysics Data System (ADS)

de Beer, D.; Haeckel, M.; Neumann, J.; Wegener, G.; Inagaki, F.; Boetius, A.

2013-02-01

This study focused on biogeochemical processes and microbial activity in sediments of a natural deep-sea CO2 seepage area (Yonaguni Knoll IV hydrothermal system, Japan). The aim was to assess the influence of the geochemical conditions occurring in highly acidic and CO2 saturated sediments on sulphate reduction (SR) and anaerobic methane oxidation (AOM). Porewater chemistry was investigated from retrieved sediment cores and in situ by microsensor profiling. The sites sampled around a sediment-hosted hydrothermal CO2 vent were very heterogeneous in porewater chemistry, indicating a complex leakage pattern. Near the vents, droplets of liquid CO2 were observed to emanate from the sediments, and the pH reached approximately 4.5 in a sediment depth >6 cm, as determined in situ by microsensors. Methane and sulphate co-occurred in most sediment samples from the vicinity of the vents down to a depth of at least 3 m. However, SR and AOM were restricted to the upper 7-15 cm below seafloor, although neither temperature, low pH, nor the availability of methane and sulphate could be limiting microbial activity. We argue that the extremely high subsurface concentrations of dissolved CO2 (1000-1700 mM), through the ensuing high H2CO3 levels (approx. 1-2 mM) uncouples the proton-motive-force (PMF) and thus inhibits biological energy conservation by ATPase-driven phosphorylation. This limits life to the surface sediment horizons above the liquid CO2 phase, where less extreme conditions prevail. Our results may have to be taken into consideration in assessing the consequences of deep-sea CO2 sequestration on benthic element cycling and on the local ecosystem state.

Porosity and Organic Carbon Controls on Naturally Reduced Zone (NRZ) Formation Creating Microbial ';Hotspots' for Fe, S, and U Cycling in Subsurface Sediments

NASA Astrophysics Data System (ADS)

Jones, M. E.; Janot, N.; Bargar, J.; Fendorf, S. E.

2013-12-01

Previous studies have illustrated the importance of Naturally Reduced Zones (NRZs) within saturated sediments for the cycling of metals and redox sensitive contaminants. NRZs can provide a source of reducing equivalents such as reduced organic compounds or hydrogen to stimulate subsurface microbial communities. These NRZ's are typically characterized by low permeability and elevated concentrations of organic carbon and trace metals. However, both the formation of NRZs and their importance to the overall aquifer carbon remineralization is not fully understood. Within NRZs the hydrolysis of particulate organic carbon (POC) and subsequent fermentation of dissolved organic carbon (DOC) to form low molecular weight dissolved organic carbon (LMW-DOC) provides electron donors necessary for the respiration of Fe, S, and in the case of the Rifle aquifer, U. Rates of POC hydrolysis and subsequent fermentation have been poorly constrained and rates in excess and deficit to the rates of subsurface anaerobic respiratory processes have been suggested. In this study, we simulate the development of NRZ sediments in diffusion-limited aggregates to investigate the physical and chemical conditions required for NRZ formation. Effects of sediment porosity and POC loading on Fe, S, and U cycling on molecular and nanoscale are investigated with synchrotron-based Near Edge X-ray Absorption Fine Structure Spectroscopy (NEXAFS). Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS) and Fourier Transform Infrared spectroscopy (FTIR) are used to characterize the transformations in POC and DOC. Sediment aggregates are inoculated with the natural microbial biota from the Rifle aquifer and population dynamics are monitored by 16S RNA analysis. Overall, establishment of low permeability NRZs within the aquifer stimulate microbial respiration beyond the diffusion-limited zones and can limit the transport of U through a contaminated aquifer. However, the long-term stability of NRZs and the co-located U is unknown and requires further study.

Post-test evaluation of the geology, geochemistry, microbiology, and hydrology of the in situ air stripping demonstration site at the Savannah River Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eddy Dilek, C.A.; Looney, B.B.; Hazen, T.C.

A full-scale demonstration of the use of horizontal wells for in situ air stripping for environment restoration was completed as part of the Savannah River Integrated Demonstration Program. The demonstration of in situ air stripping was the first in a series of demonstrations of innovative remediation technologies for the cleanup of sites contaminated with volatile organic contaminants. The in situ air stripping system consisted of two directionally drilled wells that delivered gases to and extract contamination from the subsurface. The demonstration was designed to remediate soils and sediments in the unsaturated and saturated zones as well as groundwater contaminated withmore » volatile organic compounds. The demonstration successfully removed significant quantities of solvent from the subsurface. The field site and horizontal wells were subsequently used for an in situ bioremediation demonstration during which methane was added to the injected air. The field conditions documented herein represent the baseline status of the site for evaluating the in situ bioremediation as well as the post-test conditions for the in situ air stripping demonstration. Characterization activities focused on documenting the nature and distribution of contamination in the subsurface. The post-test characterization activities discussed herein include results from the analysis of sediment samples, three-dimensional images of the pretest and post-test data, contaminant inventories estimated from pretest and post-test models, a detailed lithologic cross sections of the site, results of aquifer testing, and measurements of geotechnical parameters of undisturbed core sediments.« less

Satellite microwave observations of the Utah Great Salt Lake Desert

NASA Technical Reports Server (NTRS)

Ulaby, F. T.; Dellwig, L. F.; Schmugge, T.

1975-01-01

Microwave data acquired over the Great Salt Lake Desert area by sensors aboard Skylab and Nimbus 5 indicate that the microwave emission and backscatter were strongly influenced by contributions from subsurface layers of sediment saturated with brine. This phenomenon was observed by Skylab's S-194 radiometer operating at 1.4 GHz, S-193 RADSCAT (Radiometer-Scatterometer) operating at 13.9 GHz, and the Nimbus 5 ESMR (Electrically Scanning Microwave Radiometer) operating at 19.35 GHz. The availability of ESMR data over an 18-month period allowed an investigation of temporal variations.

Measurements of Capillary Pressure-Saturation Relationships for Silica Sands Using Light Transmission Visualization and a Rapid Pseudo Static Methods

EPA Science Inventory

Measurement of water saturation in porous media is essential for many types of studies including subsurface water flow, subsurface colloids transport and contaminant remediation to name a few. Water saturation (S) in porous media is dependent on the capillary pressure (Pc) which,...

Depth Distribution and Assembly of Sulfate-Reducing Microbial Communities in Marine Sediments of Aarhus Bay

PubMed Central

Jochum, Lara M.; Chen, Xihan; Lever, Mark A.; Loy, Alexander; Jørgensen, Bo Barker; Schramm, Andreas

2017-01-01

ABSTRACT Most sulfate-reducing microorganisms (SRMs) present in subsurface marine sediments belong to uncultured groups only distantly related to known SRMs, and it remains unclear how changing geochemical zones and sediment depth influence their community structure. We mapped the community composition and abundance of SRMs by amplicon sequencing and quantifying the dsrB gene, which encodes dissimilatory sulfite reductase subunit beta, in sediment samples covering different vertical geochemical zones ranging from the surface sediment to the deep sulfate-depleted subsurface at four locations in Aarhus Bay, Denmark. SRMs were present in all geochemical zones, including sulfate-depleted methanogenic sediment. The biggest shift in SRM community composition and abundance occurred across the transition from bioturbated surface sediments to nonbioturbated sediments below, where redox fluctuations and the input of fresh organic matter due to macrofaunal activity are absent. SRM abundance correlated with sulfate reduction rates determined for the same sediments. Sulfate availability showed a weaker correlation with SRM abundances and no significant correlation with the composition of the SRM community. The overall SRM species diversity decreased with depth, yet we identified a subset of highly abundant community members that persists across all vertical geochemical zones of all stations. We conclude that subsurface SRM communities assemble by the persistence of members of the surface community and that the transition from the bioturbated surface sediment to the unmixed sediment below is a main site of assembly of the subsurface SRM community. IMPORTANCE Sulfate-reducing microorganisms (SRMs) are key players in the marine carbon and sulfur cycles, especially in coastal sediments, yet little is understood about the environmental factors controlling their depth distribution. Our results suggest that macrofaunal activity is a key driver of SRM abundance and community structure in marine sediments and that a small subset of SRM species of high relative abundance in the subsurface SRM community persists from the sulfate-rich surface sediment to sulfate-depleted methanogenic subsurface sediment. More generally, we conclude that SRM communities inhabiting the subsurface seabed assemble by the selective survival of members of the surface community. PMID:28939599

Progression of methanogenic degradation of crude oil in the subsurface

USGS Publications Warehouse

Bekins, B.A.; Hostettler, F.D.; Herkelrath, W.N.; Delin, G.N.; Warren, E.; Essaid, H.I.

2005-01-01

Our results show that subsurface crude-oil degradation rates at a long-term research site were strongly influenced by small-scale variations in hydrologic conditions. The site is a shallow glacial outwash aquifer located near Bemidji in northern Minnesota that became contaminated when oil spilled from a broken pipeline in August 1979. In the study area, separate-phase oil forms a subsurface oil body extending from land surface to about 1 m (3.3 ft) below the 6-8-m (20-26 ft)-deep water table. Oil saturation in the sediments ranges from 10-20% in the vadose zone to 30-70% near the water table. At depths below 2 m (6.6 ft), degradation of the separate-phase crude oil occurs under methanogenic conditions. The sequence of methanogenic alkane degradation depletes the longer chain n-alkanes before the shorter chain n-alkanes, which is opposite to the better known aerobic sequence. The rates of degradation vary significantly with location in the subsurface. Oil-coated soils within 1.5 m (5 ft) of land surface have experienced little degradation where soil water saturation is less than 20%. Oil located 2-8 m (6.6-26 ft) below land surface in areas of higher recharge has been substantially degraded. The best explanation for the association between recharge and enhanced degradation seems to be increased downward transport of microbial growth nutrients to the oil body. This is supported by observations of greater microbial numbers at higher elevations in the oil body and significant decreases with depth in nutrient concentrations, especially phosphorus. Our results suggest that environmental effects may cause widely diverging degradation rates in the same spill, calling into question dating methods based on degradation state. Copyright ?? 2005. The American Association of Petroleum Geologists/Division of Environmental Geosciences. All rights reserved.

Hydraulic characteristics and nutrient transport and transformation beneath a rapid infiltration basin, Reedy Creek Improvement District, Orange County, Florida

USGS Publications Warehouse

Sumner, D.M.; Bradner, L.A.

1996-01-01

The Reedy Creek Improvement District disposes of about 7.5 million gallons per day (1992) of reclaimed water through 85 1-acre rapid infiltration basins within a 1,000-acre area of sandy soils in Orange County, Florida. The U.S. Geological Survey conducted field experiments in 1992 at an individual basin to examine and better understand the hydraulic characteristics and nutrient transport and transformation of reclaimed water beneath a rapid infiltration basin. At the time, concentrations of total nitrogen and total phosphorus in reclaimed water were about 3 and 0.25 milligrams per liter, respectively. A two-dimensional, radial, unsaturated/saturated numerical flow model was applied to describe the flow system beneath a rapid infiltration basin under current and hypothetical basin loading scenarios and to estimate the hydraulic properties of the soil and sediment beneath a basin. The thicknesses of the unsaturated and saturated parts of the surficial aquifer system at the basin investigated were about 37 and 52 feet, respectively. The model successfully replicated the field-monitored infiltration rate (about 5.5 feet per day during the daily flooding periods of about 17 hours) and ground-water mounding response during basin operation. Horizontal and vertical hydraulic conductivity of the saturated part of the surficial aquifer system were estimated to be 150 and 45 feet per day, respectively. The field-saturated vertical hydraulic conductivity of the shallow soil, estimated to be about 5.1 feet per day, was considered to have been less than the full- saturation value because of the effects of air entrapment. Specific yield of the surficial aquifer was estimated to be 0.41. The upper 20 feet of the basin subsurface profile probably served as a system control on infiltration because of the relatively low field-saturated, vertical hydraulic conductivity of the sediments within this layer. The flow model indicates that, in the vicinity of the basin, flow in the deeper, saturated zone was relatively slow compared to the more vigorous flow in the shallow saturated zone. The large radial component of flow below the water table in the vicinity of the basin implies that reclaimed water moves preferentially in the shallow part of the saturated zone upon reaching the water table. Therefore, there may be some vertical stratification in the saturated zone, with recently infiltrated water overlying ambient water. The infiltration capacity at the basin would be unaffected by a small (less than 10 feet) increase in background water-table altitude, because the water table would remain below the system control on infiltration. However, water-table rises of 15 and 20 feet were estimated to reduce the infiltration capacity of the basin by 8 and 25 percent, respectively. Model simulations indicate that increasing ponded depth within the basin from 4 to 12 inches and from 4 to 24 inches would increase basin infiltration capacity by less than 6 and 11 percent, respectively. A loading strategy at the basin that relies on long, uninterrupted flooding was shown to offer the possibility of inducing a more anaerobic environment conducive to denitrification while maintaining reclaimed-water disposal capacity. Field measurements indicated that transient, elevated concentrations or "spikes" of nitrate (as high as 33 milligrams per liter as nitrogen) occurred at the leading edge of the infiltrating water and in the shallow saturated zone following a prolonged basin rest period. This phenomenon probably is the result of mineralization and nitrification of organic nitrogen retained with the subsurface during earlier basin loading events. The organic nitrogen was retained in the shallow soil (due to adsorption/straining) and the shallow saturated zone following a prolonged basin rest period. This phenomenon probably is the result of mineralization and nitrification of organic nitrogen retained within the subsurface during earlier basin loading event

Distribution of surface deposits in the Gijón urban subsurface (NW Spain)

NASA Astrophysics Data System (ADS)

López-Fernández, Carlos; Pando, Luis; María Díaz-Díaz, Luis; Arias, Daniel; Flor-Blanco, Germán

2016-04-01

Gijón is the second most populous city (278.285 inhabitants in 2015) of the Spanish north coast. The urban subsurface is mostly formed (≈80%) by Quaternary sediments which exceeds 20 meters of thickness when cover the Jurassic carbonate basement (Gijón Formation). This work has allowed to know the spatial distribution of the different types of sediments in urban area. To do this, a GIS database was developed that contains data from more than 450 geotechnical reports. Information provided by fieldwork and the exploration of excavation works in progress throughout the city was also incorporated. Currently, the geodatabase developed comprises more than 1,400 site investigation points: boreholes, dynamic probing and trial pits. This has been supplemented with hundreds on-site and laboratory tests carried out on core samples of soils and rocks, performed following renowned testing standards. Quaternary formations, largely concealed below man-made fills, set up two main areas composed by granular and cohesive soils: the littoral zone at the northern urban perimeter and the continental zone at the southern sector. The first one, fluvial-marine deposits, consist of sandy sediments related to beach/dune systems and marsh deposits, with gravels, organogenic mud and layers of Holocene peat. The southern area is composed by residual clays -silt and coarse-grained soils to a lesser extent- linked to the dissolution of the Mesozoic substrate. Associated with these two types of deposits, two main aquifers can be differentiated. The thickness of the man-made deposits, fluvial-marine sediments and residual deposits was determined in this work. Thus, a 3-d model of Gijón subsurface at urban scale was obtained. A map of the Jurassic bedrock bedrock was also produced. Building construction works may be affected by the geotechnical behavior of the Quaternary deposits and the saturation of granular sediments., This is because the shallowness of the water table, the usual low bearing capacity and other issues such as clays consolidation or swelling phenomena. The use of concrete slabs, deep foundations and piled/anchored retaining walls is very common when projecting underground floors under these conditions.

Estimating sedimentation rates and sources in a partially urbanized catchment using caesium-137

NASA Astrophysics Data System (ADS)

Ormerod, L. M.

1998-06-01

While there has been increased interest in determining sedimentation rates and sources in agricultural and forested catchments in recent years, there have been few studies dealing with urbanized catchments. A study of sedimentation rates and sources within channel and floodplain deposits of a partially urbanized catchment has been undertaken using the 137Cs technique. Results for sedimentation rates showed no particular downstream pattern. This may be partially explained by underestimation of sedimentation rates at some sites by failure to sample the full 137Cs profile, floodplain erosion and deliberate removal of sediment. Evidence of lateral increases in net sedimentation rates with distance from the channel may be explained by increased floodplain erosion at sites closer to the channel and floodplain formation by lateral deposition. Potential sediment sources for the catchment were considered to be forest topsoil, subsurface material and sediments derived from urban areas, which were found to be predominantly subsurface material. Tracing techniques showed an increase in subsurface material for downstream sites, confirming expectations that subsurface material would increase in the downstream direction in response to the direct and indirect effects of urbanization.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aleman, S.E.

This report documents a finite element code designed to model subsurface flow and contaminant transport, named FACT. FACT is a transient three-dimensional, finite element code designed to simulate isothermal groundwater flow, moisture movement, and solute transport in variably saturated and fully saturated subsurface porous media.

Depositionally controlled recycling of iron and sulfur in marine sediments and its isotopic consequences

NASA Astrophysics Data System (ADS)

Riedinger, N.; Formolo, M.; Arnold, G. L.; Vossmeyer, A.; Henkel, S.; Sawicka, J.; Kasten, S.; Lyons, T. W.

2011-12-01

The continental margin off Uruguay and Argentina is characterized by highly dynamic depositional conditions. This variable depositional regime significantly impacts the biogeochemical cycles of iron and sulfur. Mass deposit related redeposition of reduced minerals can lead to the reoxidation of these phases and thus to an overprint of their geochemical primary signatures. Due to rapid burial these oxidized phases are still present in deeper subsurface sediments. To study the effects of sediment relocation on the sulfur and iron inventory we collected shallow and deep subsurface sediment samples via multicorer and gravity cores, respectively, in the western Argentine Basin during the RV Meteor Expedition M78/3 in May-July 2009. The samples were retrieved from shelf, slope and deep basin sites. The concentration and sulfur isotope composition of acid volatile sulfur (AVS), chromium reducible sulfur (CRS), elemental sulfur and total organic sulfur were determined. Furthermore, sequential iron extraction techniques were applied assess the distribution of iron oxide phases within the sediment. The investigated sediments are dominated by terrigenous inputs, with high amounts of reactive ferric iron minerals and only low concentrations of calcium carbonate. Total organic carbon concentrations show strong variation in the shallow subsurface sediments ranging between approximately 0.7 and 6.4 wt% for different sites. These concentrations do not correlate with water depths. Pore water accumulations of hydrogen sulfide are restricted to an interval at the sulfate-methane transition (SMT) zone a few meters below the sediment surface. In these deeper subsurface sediments pyrite is precipitated in this zone of hydrogen sulfide excess, whereas the accumulation of authigenic AVS and elemental sulfur (up to 2000 ppm) occurs at the upper and lower boundary of the sulfidic zone due the reaction of iron oxides with limited amounts of sulfide. Furthermore, our preliminary results indicate that there is a link between modern deposition in the shallow subsurface sediments and the long-term signals being buried and preserved in the deep subsurface layers. The data show that the burial of elemental sulfur into deep subsurface sediments can fuel the deep biosphere and has consequences for isotopic overprints tied, for example, to oxidation and disproportionation processes in the deeper sediments.

Origin Of Methane Gas And Migration Through The Gas Hydrate Stability Zone Beneath The Permafrost Zone

NASA Astrophysics Data System (ADS)

Uchida, T.; Waseda, A.; Namikawa, T.

2005-12-01

In 1998 and 2002 Mallik wells were drilled at Mackenzie Delta in the Canadian Arctic that clarified the characteristics of gas hydrate-dominant sandy layers at depths from 890 to 1110 m beneath the permafrost zone. Continuous downhole well log data as well as visible gas hydrates have confirmed pore-space hydrate as intergranular pore filling within sandy layers whose saturations are up to 80% in pore volume, but muddy sediments scarcely contain. Plenty of gas hydrate-bearing sand core samples have been obtained from the Mallik wells. According to grain size distributions pore-space hydrate is dominant in medium- to very fine-grained sandy strata. Methane gas accumulation and original pore space large enough to occur within host sediments may be required for forming highly saturated gas hydrate in pore system. The distribution of a porous and coarser-grained host rock should be one of the important factors to control the occurrence of gas hydrate, as well as physicochemical conditions. Subsequent analyses in sedimentology and geochemistry performed on gas hydrate-bearing sandy core samples also revealed important geologic and sedimentological controls on the formation and concentration of natural gas hydrate. This appears to be a similar mode for conventional oil and gas accumulations. It is necessary for investigating subsurface fluid flow behaviors to evaluate both porosity and permeability of gas hydrate-bearing sandy sediments, and the measurements of water permeability for them indicate that highly saturated sands may have permeability of a few millidarcies. The isotopic data of methane show that hydrocarbon gas contained in gas hydrate is generated by thermogenic decomposition of kerogen in deep mature sediments. Based on geochemical and geological data, methane is inferred to migrate upward closely associated with pore water hundreds of meters into and through the hydrate stability zone partly up to the permafrost zone and the surface along faults and permeable sandy pathways. It should be remarked that there are many similar features in appearance and characteristics between the terrestrial and deep marine areas such as Nankai Trough with observations of well-interconnected and highly saturated pore-space hydrate.

Dynamic coupling of subsurface and seepage flows solved within a regularized partition formulation

NASA Astrophysics Data System (ADS)

Marçais, J.; de Dreuzy, J.-R.; Erhel, J.

2017-11-01

Hillslope response to precipitations is characterized by sharp transitions from purely subsurface flow dynamics to simultaneous surface and subsurface flows. Locally, the transition between these two regimes is triggered by soil saturation. Here we develop an integrative approach to simultaneously solve the subsurface flow, locate the potential fully saturated areas and deduce the generated saturation excess overland flow. This approach combines the different dynamics and transitions in a single partition formulation using discontinuous functions. We propose to regularize the system of partial differential equations and to use classic spatial and temporal discretization schemes. We illustrate our methodology on the 1D hillslope storage Boussinesq equations (Troch et al., 2003). We first validate the numerical scheme on previous numerical experiments without saturation excess overland flow. Then we apply our model to a test case with dynamic transitions from purely subsurface flow dynamics to simultaneous surface and subsurface flows. Our results show that discretization respects mass balance both locally and globally, converges when the mesh or time step are refined. Moreover the regularization parameter can be taken small enough to ensure accuracy without suffering of numerical artefacts. Applied to some hundreds of realistic hillslope cases taken from Western side of France (Brittany), the developed method appears to be robust and efficient.

The metal oxide fraction of pelagic sediment in the equatorial North Pacific Ocean: A source of metals in ferromanganese nodules

USGS Publications Warehouse

Piper, D.Z.

1988-01-01

Pelagic sediment recovered at DOMES Site A in the equatorial North Pacific (151??W, 9?? 15???N) consists of a surface homogeneous layer, approximately 10 cm thick, overlying a strongly mottled layer that is lighter in color. The radiolarian composition of both units is Quaternary. In areas where this sediment was only a few centimeters thick, the underlying sediment was early Tertiary. Clay mineralogy and major oxide composition of the two Quaternary sediments are uniform. Their similarity to continental shale suggests that the sediment has a terrigenous source. Clay mineralogy and major oxide composition of the Tertiary sediment also are uniform, although they differ markedly from the Quarternary sediment. In contrast to the major oxides, concentrations of Mn, Co, Cu, and Ni soluble in hydroxylamine hydrochlorideacetic acid are strongly different in the surface and subsurface Quaternary sediment. Mn and Ni exhibit pronounced depletions in the subsurface sediment, Ni slightly more than Mn. Cu is also depleted in the subsurface sediment, but less than Mn. It is also depleted in the subsurface Tertiary sediment, whereas the Mn concentration remains high. Concentration of Co relative to Mn increases into the subsurface Quaternary sediment to a constant Co:Mn ratio of 3 ?? 10-2. The trivalent REE (the REE exclusive of Ce) and Fe exhibit little down-core variation. Distribution of elements in these sediments is closely related to their concentration in associated surface ferromanganese nodules. The nodules are of two distinct types: those from the area where the Quaternary sediment is relatively thick have ??-MnO2 as the dominant manganese mineral. The ratios of Ni:Mn, Cu:Mn, and Fe:Mn in these nodules approximate the corresponding ratios of the soluble fraction of surface sediment. Todorokite is the dominant mineral of nodules recovered from areas where the Quaternary sediment is thin. Relatively high Cu/Mn, Ni/Mn, and low Fe/Mn ratios of these nodules mirror differences between the soluble fraction of surface and subsurface Quaternary sediment. These compositional trends of sediment and nodules at DOMES Site A reflect a diagenetic origin for the todorokite nodules and a predominantly hydrogenous origin for the ??-MnO2 nodules. ?? 1988.

High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments.

PubMed

Engelhardt, Tim; Kallmeyer, Jens; Cypionka, Heribert; Engelen, Bert

2014-07-01

Marine sediments cover two-thirds of our planet and harbor huge numbers of living prokaryotes. Long-term survival of indigenous microorganisms within the deep subsurface is still enigmatic, as sources of organic carbon are vanishingly small. To better understand controlling factors of microbial life, we have analyzed viral abundance within a comprehensive set of globally distributed subsurface sediments. Phages were detected by electron microscopy in deep (320 m below seafloor), ancient (∼14 Ma old) and the most oligotrophic subsurface sediments of the world's oceans (South Pacific Gyre (SPG)). The numbers of viruses (10(4)-10(9) cm(-3), counted by epifluorescence microscopy) generally decreased with sediment depth, but always exceeded the total cell counts. The enormous numbers of viruses indicate their impact as a controlling factor for prokaryotic mortality in the marine deep biosphere. The virus-to-cell ratios increased in deeper and more oligotrophic layers, exhibiting values of up to 225 in the deep subsurface of the SPG. High numbers of phages might be due to absorption onto the sediment matrix and a diminished degradation by exoenzymes. However, even in the oldest sediments, microbial communities are capable of maintaining viral populations, indicating an ongoing viral production and thus, viruses provide an independent indicator for microbial life in the marine deep biosphere.

Concentration of Natural Gas Hydrate Beneath the Permafrost Zone: Implications for Geochemical and Hydrologic Investigations

NASA Astrophysics Data System (ADS)

Uchida, T.; Waseda, A.; Namikawa, T.

2004-12-01

Gas hydrates are ice-like solids made of water molecules containing various gas molecules. The geological evaluations have suggested worldwide methane contents of gas hydrate beneath deep sea floors as well as permafrost-related zones to about twice the total reserves of conventional and unconventional hydrocarbon. Scientific and economic interests are increasing in gas hydrate as a new energy resource and a potential greenhouse gas. In 1998 and 2002 Mallik wells were drilled in the Canadian Arctic that clarified the characteristics of gas hydrate-dominant layers at depths from 890 to 1110 m beneath the permafrost zone. Continuous downhole well log data, anomalies of chloride contents in pore waters, core temperature depression as well as visible gas hydrates have confirmed the highly saturated pore-space hydrate as intergranular pore filling within sandy layers, whose saturations are higher than 70% in pore volume. Muddy sediments scarcely contain gas hydrate. The Nankai Trough runs along the Japanese Island, where forearc basins and accretionary prisms developed extensively and BSRs (bottom simulating reflectors) have been recognized widely. The METI Nankai Trough wells in 2000 also revealed the presence of pore-space hydrate filling intergranular pore of sandy layers. It is remarked that there are many similar features in appearance and characteristics between the Mallik and Nankai Trough areas with observations of well-interconnected and highly saturated pore-space hydrate. It is necessary for evaluating subsurface fluid flow behaviors to know both porosity and permeability of gas hydrate-bearing sandy sediments, and measurements of water permeability for them indicate that highly saturated sands may have permeability of a few millidarcies. Subsequent analyses in sedimentology and geochemistry performed on gas hydrate-bearing sands revealed important geologic and sedimentologic controls on the formation and concentration of gas hydrate. It is suggested that the distribution of a porous and coarser-grained sandy sediments is one of the most important factors to control the occurrence of gas hydrates, as well as physicochemical conditions.

Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

DOE PAGES

Hwang, C.; Copeland, A.; Lucas, Susan; ...

2015-01-22

We report the genome sequence of Anaeromyxobacter sp. Fw109-5, isolated from nitrate- and uranium-contaminated subsurface sediment of the Oak Ridge Integrated Field-Scale Subsurface Research Challenge (IFC) site, Oak Ridge Reservation, TN. The bacterium’s genome sequence will elucidate its physiological potential in subsurface sediments undergoing in situ uranium bioremediation and natural attenuation.

The potential of geoelectrics for landslide forecasting

NASA Astrophysics Data System (ADS)

Niesner, E.; Weidinger, J. T.

2009-04-01

In the last years both authors of this article had been involved into geophysical and geological investigations of potential landslide areas. In one case, fortunately to the researchers but not for the people living in this area, the investigations started three years in advance of an actual landslide. Therefore interesting measurements are now available in the fore field of an actual slide event with a volume of approximately 3.5 million cubic meter. Mainly geoelectric, seismic and geologic data had been gathered. On some profiles also repeat measurements had been done to detect changes in the subsurface, prior to the landslide. These data showed, verified by the later on landslide event, already changes in the subsurface long before the actual movement on the surface could be detected. Also some continuous geoelectric monitoring had been done during a period of ten days about four month before the initialization of the event. In this special case, the area of the Gschliefgraben in Upper Austria, especially the changes in the water saturation of the potential landslide area showed a high impact on the subsurface resistivity distribution. Geoelectric measurements are ideally suited to detect these changes in subsurface water saturation. Since the water saturation of the sediments is directly correlated to the mechanical properties and therefore the stability of the slope, the changes in the water saturations are directly correlated with the landslide stability or safety factor. Additional to these field investigations also petrophysical measurements had been done on typical samples gathered in the landslide area to get calibration values. Also a limited set of meteorological data of the area had been available. The data gathered during the research project showed already a very high risk for a landslide event. Local authorities had been informed and two public information articles had been published two and one year in advance of the slide event in a local newspaper to warn of the potential danger. But due to a limited budget no further verification of the potential danger could be done. So drilling was done only after the initiation of the catastrophic event in late autumn 2007. Although no further geoelectric measurements had been possible, the additional data gathered by the later on drilling (more than 250 wells had been drilled during the remediation work) and the observations of the landslide dynamics could be included into the reinvestigation of the data. Also laser scanning investigations in time intervals of some months during the acute phase, by order of the Austrian Torrent and Avalanche Control had been available together with a laser scan of the area before the landslide, provided by the government of Upper Austria. All up to now available data had been included. The gathered data and an integrated analysis from the viewpoint of landslide forecasting will be presented, including the knowledge of the starting time and behaviour of the catastrophic landslide event. This project was financed by the Austrian Academy of Science. Literature: Niesner,E.; Weidinger, Johannes T. : Investigation of a historic and recent landslide area in Ultrahelvetic sediments at the northern boundary of the Alps (Austria) by ERT-measurements, The Leading Edge, Nov.2008,SEG.

Long-Term Controls on Solute and Sediment Fluxes From a Rapidly Weathering Tropical Watershed

NASA Astrophysics Data System (ADS)

Shanley, J. B.; McDowell, W. H.; Stallard, R. F.

2006-12-01

The 326-ha Rio Icacos watershed in the tropical wet forest of the Luquillo Mountains, northeastern Puerto Rico, is underlain by granodiorite bedrock with weathering rates among the highest in the world. We pooled stream chemistry and suspended sediment datasets from three discrete periods: 1983-87; 1991-97; and 2000-05, which bracket two major hurricanes that crossed the site; Hugo in 1988 and Georges in 1998. This mountainous landscape is also subject to frequent disturbance by landslides. Stream major ion chemistry reflects weathering of the granodiorite, but dilutes by as much as 90% during the largest storms. This dilution reflects the increasing dominance of rainwater (and cloud water) with increasing streamflow, as major ion stoichiometry is maintained except when precipitation is high in sea salt. Given the broad area of surface saturation, low-permeability soils, and flashy stream hydrograph which quickly returns to base flow, it appears that precipitation moves to the stream by saturation overland flow. Piping and rapid shallow subsurface flow through the rooting zone may also facilitate precipitation movement off hillslopes. Concentration-discharge relations for most major ions were fairly stable through time, suggesting minimal long-term effects from disturbance. The exception was nitrate, which increased from near 5 μmol L-1 during the 1983-87 period to greater than 12 μmol L-1 and remaining elevated for several years following each of the two hurricanes. The relation between suspended sediment concentration and discharge was also stable over time but exhibited more variability, some due to hysteresis but some likely caused by pulsed sediment from discrete disturbances.

Optical fiber-mediated photosynthesis for enhanced subsurface oxygen delivery.

PubMed

Lanzarini-Lopes, Mariana; Delgado, Anca G; Guo, Yuanming; Dahlen, Paul; Westerhoff, Paul

2018-03-01

Remediation of polluted groundwater often requires oxygen delivery into subsurface to sustain aerobic bacteria. Air sparging or injection of oxygen containing solutions (e.g., hydrogen peroxide) into the subsurface are common. In this study visible light was delivered into the subsurface using radially emitting optical fibers. Phototrophic organisms grew near the optical fiber in a saturated sand column. When applying light in on-off cycles, dissolved oxygen (DO) varied from super saturation levels of >15 mg DO/L in presence of light to under-saturation (<5 mg DO/L) in absence of light. Non-photosynthetic bacteria dominated at longer radial distances from the fiber, presumably supported by soluble microbial products produced by the photosynthetic microorganisms. The dissolved oxygen variations alter redox condition changes in response to light demonstrate the potential to biologically deliver oxygen into the subsurface and support a diverse microbial community. The ability to deliver oxygen and modulate redox conditions on diurnal cycles using solar light may provide a sustainable, long term strategy for increasing dissolved oxygen levels in subsurface environments and maintaining diverse biological communities. Copyright © 2017 Elsevier Ltd. All rights reserved.

Great differences in the critical erosion threshold between surface and subsurface sediments: A field investigation of an intertidal mudflat, Jiangsu, China

NASA Astrophysics Data System (ADS)

Shi, Benwei; Wang, Ya Ping; Wang, Li Hua; Li, Peng; Gao, Jianhua; Xing, Fei; Chen, Jing Dong

2018-06-01

Understanding of bottom sediment erodibility is necessary for the sustainable management and protection of coastlines, and is of great importance for numerical models of sediment dynamics and transport. To investigate the dependence of sediment erodibility on degree of consolidation, we measured turbidity, waves, tidal currents, intratidal bed-level changes, and sediment properties on an exposed macrotidal mudflat during a series of tidal cycles. We estimated the water content of surface sediments (in the uppermost 2 cm of sediment) and sub-surface sediments (at 2 cm below the sediment surface). Bed shear stress values due to currents (τc), waves (τw), and combined current-wave action (τcw) were calculated using a hydrodynamic model. In this study, we estimate the critical shear stress for erosion using two approaches and both of them give similar results. We found that the critical shear stress for erosion (τce) was 0.17-0.18 N/m2 in the uppermost 0-2 cm of sediment and 0.29 N/m2 in sub-surface sediment layers (depth, 2 cm), as determined by time series of τcw values and intratidal bed-level changes, and values of τce, obtained using the water content of bottom sediments, were 0.16 N/m2 in the uppermost 2 cm and 0.28 N/m2 in the sub-surface (depth, 2 cm) sediment. These results indicate that the value of τce for sub-surface sediments (depth, 2 cm) is much greater than that for the uppermost sediments (depth, 0-2 cm), and that the τce value is mainly related to the water content, which is determined by the extent of consolidation. Our results have implications for improving the predictive accuracy of models of sediment transport and morphological evolution, by introducing variable τce values for corresponding sediment layers, and can also provide a mechanistic understanding of bottom sediment erodibility at different sediment depths on intertidal mudflats, as related to differences in the consolidation time.

Non-viable Microbial Community Structure and Geochemistry of Deep Subsurface Shales at Marcellus Shale Energy and Environment Laboratory

NASA Astrophysics Data System (ADS)

Akondi, R.; Trexler, R.; Sharma, S.; Mouser, P. J.; Pfiffner, S. M.

2016-12-01

The deep subsurface is known to harbor diverse communities of living microbes, and can therefore be expected to also harbor an equally diverse and likely different set of non-viable microbial populations. In this study, diglyceride fatty acids, (DGFA, biomarkers for non-viable microbes) as well as their compound specific isotopes (CSIA) were used to study the yield and variety of DGFAs in deep subsurface mid-Devonian sediments of different lithologies. Pristine sidewall cores were obtained from intervals in the Marcellus, Mahantango, and the Marcellus/Mahantango formation interface. The biomarkers were extracted and DGFAs were methylated to fatty acid methyl esters (FAMEs) and analyzed using GC-MS, while the CSIAs were performed using GC-irMS. Sediments were also analyzed for total organic carbon (TOC), stable carbon isotopic composition of organic carbon (δ13Corg), inorganic carbon (δ13Ccarb), and nitrogen (δ15Norg). TOC concentration was highest in the Marcellus and there was a general trend of increasing TOC from Mahantango to the Marcellus. The δ13Corg and δ13Ccarb increased and decreased respectively from Mahantango to the Marcellus while δ15Norg did not show any trend. The FAME profiles consisted of normal saturated, monounsaturated, polyunsaturated, branched, epoxy, terminally branched, hydroxyl, and dimethyl esters. The total biomass yield and variety of DGFA-FAME profiles were higher in the Mahantango compared to the samples from the Marcellus formation and Marcellus/Mahantango interface, suggesting the presence of more paleo-microbial activity in the less consolidated Mahantango formation. We attribute this to the smaller pore throat sizes within the Marcellus formation compared to the Mahantango formation. Since organic matter in the sediments is also one of the key sources of energy for microbial metabolism, bulk 13C and CSIA of the lipids will be used to understand the source(s) and pathways of the carbon cycling within the microbial communities.

The hydrological response of a small catchment after the abandonment of terrace cultivation. A study case in northwestern Spain

NASA Astrophysics Data System (ADS)

Llorente-Adán, Jose A.; Lana-Renault, Noemí; Galilea, Ianire; Ruiz-Flaño, Purificacion

2015-04-01

Terrace construction for cultivation results in a complete transformation of the hillslopes to a series of flat sectors and almost vertical steps. This strategy, which involves a redistribution of soils and a re-organization of the drainage network, provides fertile soil over steep slopes, improves infiltration and controls overland flow under conditions of intense rainstorms. In Camero Viejo (north-western Iberian ranges) most of the hillslopes are occupied by terraced fields. During the XXth century, rural population declined and agricultural practices were abandoned. In this area, a small catchment (1.9 km2) was monitored in 2012 for studying how the abandonment of agricultural terraces affect water and sediment transfer from the hillslopes to the channels. Terraces occupy 40% of the catchment and are covered by sparse grass and shrubs. The equipment installed in the catchment registers continuously meteorological data, discharge and water table fluctuations. Data on suspended sediment transport is obtained by means of a rising-stage sampler. Here we present the hydrological results corresponding to the years 2012-13 and 2013-14. The hydrological response of the catchment was moderate (annual runoff coefficient < 0.20), which could be in part explained by the high evapotranspiration rates reported in the area. Lows flows were recorded in summer and autumn, when the water reserves of the catchment were dry, and high flows occurred from January, when the catchment became wetter. The shape of the hydrographs, with slow response times, moderate peakflows and long recession limbs suggested a large contribution of subsurface flow, probably favored by deep and well structured soils in the bench terraces. Soil saturation areas were not observed during the study period, suggesting that soil infiltration processes and subsurface flow are important, and that the drainage system of the terraces is probably well maintained. No suspended sediment has been collected so far, confirming the hypothesis that subsurface flow might be a dominant runoff generation process.

Sediment storage quantification and postglacial evolution of an inner-alpine sedimentary basin (Gradenmoos, Schober Mountains, Austria)

NASA Astrophysics Data System (ADS)

Götz, J.; Buckel, J.; Otto, J. C.; Schrott, L.

2012-04-01

Knickpoints in longitudinal valley profiles of alpine headwater catchments can be frequently assigned to the lithological and tectonical setting, to damming effects through large (rockfall) deposits, or to the impact of Pleistocene glaciations causing overdeepened basins. As a consequence various sedimentary sinks developed, which frequently interrupt sediment flux in alpine drainage basins. Today these locations may represent landscape archives documenting a sedimentary history of great value for the understanding of alpine landscape evolution. The glacially overdeepened Gradenmoos basin at 1920 m a.s.l. (an alpine lake mire with adjacent floodplain deposits and surrounding slope storage landforms; approx. 4.1 km2) is the most pronounced sink in the studied Gradenbach catchment (32.5 km2). The basin is completely filled up with sediments delivered by mainly fluvial processes, debris flows, and rock falls, it is assumed to be deglaciated since Egesen times and it is expected to archive a continuous stratigraphy of postglacial sedimentation. As the analysis of denudation-accumulation-systems is generally based on back-calculation of stored sediment volumes to a specific sediment delivering area, most reliable results will be consequently obtained (1) if sediment output of the system can be neglected for the investigated period of time, (2) if - due to spatial scale - sediment storage can be assessed quantitatively with a high level of accuracy, and (3) if the sediment contributing area can be clearly delimited. All three aspects are considered to be fulfilled to a high degree within the Gradenmoos basin. Sediment storage is quantified using geophysical methods, core drillings and GIS modelling whereas postglacial reconstruction is based on radiocarbon dating and palynological analyses. Subject to variable subsurface conditions, different geophysical methods were applied to detect bedrock depth. Electrical resistivity surveying (2D/3D) was used most extensively as it delivered detailed and realistic subsurface models with low residual errors in the fine grained and water saturated central and distal part of the basin. With a lower data density, ground penetrating radar and refraction seismic supplied bedrock depths underneath adjacent debris and talus slope deposits. Additionally extracted sediment cores (up to 22 m depth) yielded a detailed stratigraphic record of the basin comprising a basal till layer underneath lake sediments (sandy-silty, partly varved), a sandy matrix with several oxidised layers in the upper sections, and layers of peat towards the surface. As bedrock was reached several times, core drilling further enabled to calibrate resistivity models. On the base of geophysical derived bedrock points, the shape of the assumed bedrock basin was modelled using a thin-plate-spline interpolation. Sediment volumes were calculated by subtracting the bedrock model from a surface DEM derived from terrestrial laser scanning. Since sediment delivering areas can be clearly assigned to single storage landform volumes, denudation rates could be calculated in detail and related to sedimentation rates obtained by radiocarbon dating results. An integrated analysis of surface, subsurface and temporal information finally yielded a model of postglacial basin evolution which will be discussed in a paraglacial context. This presentation is supported by the EUROCORES programme TOPO-EUROPE of the European Science Foundation.

Remote Sensing of Subsurface Microbial Transformations

NASA Astrophysics Data System (ADS)

Williams, K. H.; Ntarlagiannis, D.; Slater, L.; Long, P.; Dohnalkova, A.; Hubbard, S. S.; Banfield, J. F.

2004-12-01

Understanding how microorganisms influence the physical and chemical properties of the subsurface is hindered by our inability to detect microbial dynamics in real time with high spatial resolution. Here we have used non-invasive geophysical methods to monitor biomineralization and related processes during biostimulation at both laboratory and field scales. Alterations in saturated sediment characteristics resulting from microbe-mediated transformations were concomitant with changes in complex resistivity, spontaneous potential, and acoustic wave signatures. Variability in complex resistivity and acoustic wave amplitudes appears tied to the nucleation, growth, and development of nanoparticulate precipitates along grain surfaces and within the pore space. In contrast, time-varying spontaneous potentials appear primarily sensitive to the electrochemical gradients resulting from metabolic pathways, such as iron- and sulfate-reduction. Furthermore, they enable us to track mobile fronts of active respiration that arise due to microbial chemotaxis. In this way, geophysical data may be used to image the distribution of mineral precipitates, biomass, and biogeochemical fronts evolving over time and suggest the ability to remotely monitor contaminated aquifers undergoing bioremediation.

Sedimentological Properties of Natural Gas Hydrates-Bearing Sands in the Nankai Trough and Mallik Areas

NASA Astrophysics Data System (ADS)

Uchida, T.; Tsuji, T.; Waseda, A.

2009-12-01

The Nankai Trough parallels the Japanese Island, where extensive BSRs have been interpreted from seismic reflection records. High resolution seismic surveys have definitely indicated gas hydrate distributions, and drilling the MITI Nankai Trough wells in 2000 and the METI Tokai-oki to Kumano-nada wells in 2004 have revealed subsurface gas hydrate in the eastern part of Nankai Trough. In 1998 and 2002 Mallik wells were drilled at Mackenzie Delta in the Canadian Arctic that also clarified the characteristics of gas hydrate-dominant sandy layers at depths from 890 to 1110 m beneath the permafrost zone. During the field operations, the LWD and wire-line well log data were continuously obtained and plenty of gas hydrate-bearing sand cores were recovered. Subsequence sedimentological and geochemical analyses performed on those core samples revealed the crucial geologic controls on the formation and preservation of natural gas hydrate in sediments. Pore-space gas hydrates reside in sandy sediments mostly filling intergranular porosity. Pore waters chloride anomalies, core temperature depression and core observations on visible gas hydrates confirm the presence of pore-space gas hydrates within moderate to thick sandy layers, typically 10 cm to a meter thick. Sediment porosities and pore-size distributions were obtained by mercury porosimetry, which indicate that porosities of gas hydrate-bearing sandy strata are approximately 45 %. According to grain size distribution curves, gas hydrate is dominant in fine- to very fine-grained sandy strata. Gas hydrate saturations are typically up to 80 % in pore volume throughout most of the hydrate-dominant sandy layers, which are estimated by well log analyses as well as pore water chloride anomalies. It is necessary for investigating subsurface fluid flow behaviors to evaluate both porosity and permeability of gas hydrate-bearing sandy sediments, and the measurements of water permeability for them indicated that highly saturated sands should have permeability of 1 x 10-15 to 5 x 10-15 m2 (1 to 5 millidarcies). Most of gas hydrates fill the intergranular pore systems of sandy layers, which are derived from the sedimentary facies such as channels and crevasse splay/levee deposits. It is remarked that those sandy strata are usually composed of arenite sands with matrix-free intergranular pore systems. Gas hydrates are less frequently found in fine-grained sediments such as siltstone and mudstone from overbank deposits. Methane gas accumulation and original pore space large enough to occur within host sediments may be required for forming highly saturated gas hydrate in pore system. The distribution of a porous and coarser-grained host rock should be one of the important factors to control the occurrence of gas hydrate, as well as physicochemical conditions. This appears to be a similar mode for conventional oil and gas accumulations, and this knowledge is important to predicting the location of other hydrate deposits and their eventual energy resource. This study was performed as a part of the MH21 Research Consortium on methane hydrate in Japan.

Groundwater nutrient concentrations during prairie reconstruction on an Iowa landscape

USGS Publications Warehouse

Tomer, M.D.; Schilling, K.E.; Cambardella, C.A.; Jacobson, P.; Drobney, P.

2010-01-01

One anticipated benefit of ecosystem restoration is water quality improvement. This study evaluated NO3-N and phosphorus in subsurface waters during prairie establishment following decades of row-crop agriculture. A prairie seeding in late 2003 became established in 2006. Wells and suction cup samplers were monitored for NO3-N and phosphorus. Nitrate-N varied with time and landscape position. Non-detectable NO3-N concentrations became modal along ephemeral drainageways in 2006, when average concentrations in uplands first became <10mg NO3-NL-1. This decline continued and upland groundwater averaged near 2mg NO3-NL-1 after 2007. The longer time lag in NO3-N response in uplands was attributed to greater quantities of leachable N in upland subsoils. Spatial differences in vadose-zone travel times were less important, considering water table dynamics. Phosphorus showed a contrasting landscape pattern, without any obvious temporal trend. Phosphorus was greatest along and near ephemeral drainageways. Sediment accumulation from upland agricultural erosion provided a source of P along drainageways, where shallow, reductive groundwater increased P solubility. Phosphorus exceeded eutrophication risk thresholds in these lower areas, where saturation-excess runoff could readily transport P to surface waters. Legacy impacts of past agricultural erosion and sedimentation may include soluble phosphorus in shallow groundwater, at sites prone to saturation-excess runoff. ?? 2010.

Nanoscale Titanium Dioxide (nTiO2) Transport in Water-Saturated Natural Sediments: Influence of Soil Organic Matter and Fe/Al Oxyhydroxides

NASA Astrophysics Data System (ADS)

Fisher-Power, L.; Cheng, T.

2017-12-01

Transport of engineered nanoparticles (ENP) in subsurface environments has important implications to water quality and soil contamination. Although extensive research has been conducted to understand the effects of water chemistry on ENP transport, less attention has been paid to influences from the transport medium/matrix. The objective of this research is to investigate the effects of natural organic matter (NOM) and Fe/Al oxyhydroxides in a natural sediment on ENP transport. A sediment was collected and separated into four portions, one of which was unmodified, and the others treated to remove specific components (organic matter, Fe/Al oxyhydroxides, or both organic matter and Fe/Al oxyhydroxides). Transport of nanoscale titanium dioxide (nTiO2) in columns packed with quartz sand and each of the four types of the sediment under water-saturated conditions was studied. Our results showed that nTiO2 transport was strongly influenced by pH and sediment composition. When influent pH = 5, nTiO2 transport in all the sediments was low, as positively-charged nTiO2 was attracted to negatively charged NOM, quartz, and other minerals. nTiO2 transport was slightly enhanced in columns packed with untreated sediment or Fe/Al oxyhydroxides removed sediment due to dissolved organic matter generated by the partial dissolution of NOM, which adsorbed onto nTiO2 surface and reversed its zeta potential to negative. When influent pH = 9, nTiO2 transport was generally high since negatively-charged nTiO2 was repelled by negatively charged transport medium. However, in columns packed with the organic matter removed sediment or the Fe/Al oxyhydroxides removed sediment, nTiO2 transport was low. This was attributable to pH buffering by the sediment, which decreased pore water pH in the column, resulting in zeta potential change and electrostatic attraction between Fe/Al oxyhydroxides and nTiO2. This research demonstrates that electrostatic forces between nTiO2 and mineral/organic components in natural sediments is a key factor that controls nTiO2 retention and transport, and that both NOM and Fe/Al oxyhydroxides may substantially influence nTiO2 transport.

Development and validation of a runoff and erosion model for lowland drained catchments

NASA Astrophysics Data System (ADS)

Grangeon, Thomas; Cerdan, Olivier; Vandromme, Rosalie; Landemaine, Valentin; Manière, Louis; Salvador-Blanes, Sébastien; Foucher, Anthony; Evrard, Olivier

2017-04-01

Modelling water and sediment transfer in lowland catchments is complex as both hortonian and saturation excess-flow occur in these environments. Moreover, their dynamics was complexified by the installation of tile drainage networks or stream redesign. To the best of our knowledge, few models are able to simulate saturation runoff as well as hortonian runoff in tile-drained catchments. Most of the time, they are used for small scale applications due to their high degree of complexity. In this context, a model of intermediate complexity was developed to simulate the hydrological and erosion processes at the catchment scale in lowland environments. This GIS-based, spatially distributed and lumped model at the event scale uses a theoretical hydrograph to approximate within-event temporal variations. It comprises two layers used to represent surface and subsurface transfers. Observations of soil surface characteristics (i.e. vegetation density, soil crusting and roughness) were used to document spatial variations of physical soil characteristics (e.g. infiltration capacity). Flow was routed depending on the local slope, using LIDAR elevation data. Both the diffuse and the gully erosion are explicitly described. The model ability to simulate water and sediment dynamics at the catchment scale was evaluated using the monitoring of a selection of flood events in a small, extensively cultivated catchment (the Louroux catchment, Loire River basin, central France; 25 km2). In this catchment, five monitoring stations were equipped with water level sensors, turbidity probes, and automatic samplers. Discharge and suspended sediment concentration were deduced from field measurements. One station was installed at the outlet of a tile drain and was used to parameterize fluxes supplied by the drainage network. The selected floods were representative of various rainfall and soil surface conditions (e.g. low-intensity rainfall occurring on saturated soils as well as intense rainfall occurring on dry soils in spring). The model was able to reproduce the runoff volumes for these different situations, and performed well, especially in winter (the relationship between observed and modeled values has R2=0.72) when most of the sediment are transferred. Therefore, future work will evaluate the model ability to reproduce the erosion and sediment dynamics in this catchment in order to provide a tool for sediment management in these lowland environments draining agricultural land where river siltation is problematic.

Mechanisms of Arsenic Mobilization and Attenuation in Subsurface Sediments

NASA Astrophysics Data System (ADS)

O'Day, P. A.; Illera, V.; Root, R.; Choi, S.; Vlassopoulos, D.

2007-12-01

This talk will review molecular mechanisms of As mobilization and attenuation in subsurface sediments using examples from recent field studies that represent a range in oxidation-redox (redox) potential. As a ubiquitous trace element in sediments, As speciation and fate is linked to the abundance and biogeochemical behavior of the generally more abundant redox-active elements Fe, S, and Mn. All four elements are subject to oxidation, reduction, and pH-dependent processes such as sorption, desorption, precipitation, and dissolution, and which may include both biotic and abiotic reaction steps. We have used spectroscopic interrogation and geochemical modeling to characterize As speciation in subsurface sediments in several contrasting environments, including high and low S and Fe settings. Aquifers most at risk for contamination by As include those that are rich in organic matter and nutrients, stimulating high rates of microbial reduction and creating anoxic conditions, but limited in labile or available S and/or Fe that remove As by precipitation or adsorption. In subsurface sediments with low labile S and Fe, laboratory experiments and spectroscopic studies suggest that sediment Mn minerals are important in the oxidation of sorbed As(III) to As(V), but that they have a limited oxidation capacity. Arsenic attenuation and mobilization in the subsurface are affected by seasonal variations when hydraulic conditions are influenced by surface infiltration, which may induce transitions from oxidized to reduced conditions (or vice versa) in porewater.

Spectral induced polarization as a tool to map subsurface biogeochemical hot spots: a first laboratory evaluation in the Fe-S system

NASA Astrophysics Data System (ADS)

Nordsiek, Sven; Gilfedder, Ben; Frei, Sven

2017-04-01

Zones of intense biogeochemical reactivity (hot spots) arise in the saturated subsurface at the interface between regions with oxidizing and reducing conditions. Hot spots are both sinks and sources of different chemical compounds, thus they are of particular importance for element cycling in the subsurface. However, the investigation of hot spot structures is difficult, because they are not directly identifiable from the surface and can only be investigated by invasive methods in the subsurface. Additionally, they often form in sensitive wetland ecosystems where only non-destructive measurements are applicable to avoid significant degradation of these sensitive environments. Under these circumstances, geophysical methods may provide useful tools to identify biogeochemically active regions. One of the most important biogeochemical reactions in wetlands is the reduction of sulphate and formation and accumulation of FexSy minerals (where x and y delineate mineral stoichiometry). These reactions only occur in specific hot spots where specific chemical and microbial conditions are met. Within a research project concerning biogeochemical transformations and turnover in wetlands, we investigate the applicability of the geoelectrical method of spectral induced polarization (SIP) to locate and monitor regions containing polarizing FexSy particles as indicator for biogeochemical hot spots. After developing and testing a sample holder and a set of non-polarizing electrodes for laboratory SIP measurements, we performed experiments on natural soil samples taken from the hyporheic zone of a local river channel. The collected material originates from a location known for biogeochemical activity. The sample contains a high percentage of dark grayish/black sediment interpreted as FexSy, and possibly pyrite (FeS2). The material was homogenized and split into four samples. The FexSy concentration was adjusted to three different levels by oxidation using H2O2. For all samples we recorded the SIP spectra in the frequency range between 0.26 Hz and 25 Hz repeatedly. The sensitivity of SIP measurements to the FexSy content is promising. For a sample of the sediment saturated with its natural fluid (conductivity > 600 μS/cm), we observed phase shifts of more than 7 mrad at frequencies between 1 and 10 Hz. We expect a lower fluid conductivity and thus a larger maximum phase shift for measurements in wetlands. The application of the SIP method in field surveys at places with biogeochemical activity will be the next step in our study.

A one-dimensional model of subsurface hillslope flow

Treesearch

Jason C. Fisher

1997-01-01

Abstract - A one-dimensional, finite difference model of saturated subsurface flow within a hillslope was developed. The model uses rainfall, elevation data, a hydraulic conductivity, and a storage coefficient to predict the saturated thickness in time and space. The model was tested against piezometric data collected in a swale located in the headwaters of the North...

Determination of subsurface fluid contents at a crude-oil spill site

USGS Publications Warehouse

Hess, K.M.; Herkelrath, W.N.; Essaid, H.I.

1992-01-01

Measurement of the fluid-content distribution at sites contaminated by immiscible fluids, including crude oil, is needed to better understand the movement of these fluids in the subsurface and to provide data to calibrate and verify numerical models and geophysical methods. A laboratory method was used to quantify the fluid contents of 146 core sections retrieved from boreholes aligned along a 120-m longitudinal transect at a crude-oil spill site near Bemidji, Minnesota, U.S.A. The 47-mm-diameter, minimally disturbed cores spanned a 4-m vertical interval contaminated by oil. Cores were frozen on site in a dry ice-alcohol bath to prevent redistribution and loss of fluids while sectioning the cores. We gravimetrically determined oil and water contents using a two-step method: (1) samples were slurried and the oil was removed by absorption onto strips of hydrophobic porous polyethylene (PPE); and (2) the samples were oven-dried to remove the water. The resulting data show sharp vertical gradients in the water and oil contents and a clearly defined oil body. The subsurface distribution is complex and appears to be influenced by sediment heterogeneities and water-table fluctuations. The center of the oil body has depressed the water-saturated zone boundary, and the oil is migrating laterally within the capillary fringe. The oil contents are as high as 0.3 cm3 cm-3, which indicates that oil is probably still mobile 10 years after the spill occurred. The thickness of oil measured in wells suggests that accumulated thickness in wells is a poor indicator of the actual distribution of oil in the subsurface. Several possible sources of error are identified with the field and laboratory methods. An error analysis indicates that adsorption of water and sediment into the PPE adds as much as 4% to the measured oil masses and that uncertainties in the calculated sample volume and the assumed oil density introduce an additional ??3% error when the masses are converted to fluid contents.

Improved measurement of extracellular enzymatic activities in subsurface sediments using competitive desorption treatment

NASA Astrophysics Data System (ADS)

Hoarfrost, Adrienne; Snider, Rachel; Arnosti, Carol

2017-02-01

Extracellular enzymatic activities initiate microbially-driven heterotrophic carbon cycling in subsurface sediments. While measurement of hydrolytic activities in sediments is fundamental to our understanding of carbon cycling, these measurements are often technically difficult due to sorption of organic substrates to the sediment matrix. Most methods that measure hydrolysis of organic substrates in sediments rely on recovery of a fluorophore or fluorescently-labeled target substrate from a sediment incubation. The tendency for substrates to sorb to sediments results in lower recovery of an added substrate, and can result in data that are unusable or difficult to interpret. We developed a treatment using competitive desorption of a fluorescently-labeled, high molecular weight organic substrate that improves recovery of the labeled substrate from sediment subsamples. Competitive desorption treatment improved recovery of the fluorescent substrate by a median of 66%, expanded the range of sediments for which activity measurements could be made, and was effective in sediments from a broad range of geochemical contexts. More reliable measurements of hydrolytic activities in sediments will yield usable and more easily interpretable data from a wider range of sedimentary environments, enabling better understanding of microbially-catalyzed carbon cycling in subsurface environments.

Spilled oil and infaunal activity - Modification of burrowing behavior and redistribution of oil

USGS Publications Warehouse

Clifton, H.E.; Kvenvolden, K.A.; Rapp, J.B.

1984-01-01

A series of experiments in Willapa Bay, Washington, indicates the degree to which the presence of spilled oil modifies the burrowing behavior of infauna and the extent to which the animals redistribute oil into intertidal sediment. Small amounts of North Slope crude oil introduced at low tide directly into burrow openings (mostly made by the crustacean Callianassa) resulted in a limited and temporary reduction in the number of burrow openings. In contrast, a layer of oil-saturated sand 1 cm thick buried about 5 cm below the sediment surface sharply reduced the number of burrow openings. After a year, the few new burrows penetrated only the margins of the experimental plot, and bioturbation below the buried oil-saturated sand layer declined dramatically. The experiments suggest that small amounts of oil temporarily stranded by tides in themselves have no long-range effect on burrowing behavior. The fauna, however, are capable of introducing measurable amounts of oil into the subsurface, where it is retained long after the rest of the stranded oil had washed away. A buried layer of oil-saturated sand greatly reduces infaunal activity; the oil presents an effective barrier that can persist for years. The oil incorporated into the sediment from burrow openings showed evidence of degradation after 7 months. In contrast the layer of buried oil remained essentially undergraded after a period of two years, even though oil in lower concentrations above the layer was degraded after a period of one year. This variation in degree of degradation of the buried oil, as well as the heterogeneity of oil distribution wherever the oil has been incorporated from the surface, emphasises the importance of careful sampling in any attempt to locate or monitor the presence of spilled oil in the substrate.In a series of experiments in Willapa Bay, Washington, small amounts of North Slope crude oil introduced at low tide directly into burrow openings resulted in a limited and temporary reduction in the number of burrow openings. In contrast, a layer of oil-saturated sand 1 cm thick buried about 5 cm below the sediment surface sharply reduced the number of burrow openings. After a year, the few new burrows penetrated only the margins of the experimental plot, and bioturbation below the buried oil-saturated sand layer declined dramatically. The experiments suggest that small amounts of oil temporarily stranded by tides in themselves have no long-range effect on burrowing behavior. The oil incorporated into the sediment from burrow openings showed evidence of degradation after 17 months. In contrast, the layer of buried oil remained essentially undegraded after a period of two years. Refs.

Microbial community composition along a 50 000-year lacustrine sediment sequence

PubMed Central

Ariztegui, Daniel; Horn, Fabian; Kallmeyer, Jens; Orsi, William D

2018-01-01

Abstract For decades, microbial community composition in subseafloor sediments has been the focus of extensive studies. In deep lacustrine sediments, however, the taxonomic composition of microbial communities remains undercharacterized. Greater knowledge on microbial diversity in lacustrine sediments would improve our understanding of how environmental factors, and resulting selective pressures, shape subsurface biospheres in marine and freshwater sediments. Using high-throughput sequencing of 16S rRNA genes across high-resolution climate intervals covering the last 50 000 years in Laguna Potrok Aike, Argentina, we identified changes in microbial populations in response to both past environmental conditions and geochemical changes of the sediment during burial. Microbial communities in Holocene sediments were most diverse, reflecting a layering of taxa linked to electron acceptors availability. In deeper intervals, the data show that salinity, organic matter and the depositional conditions over the Last Glacial-interglacial cycle were all selective pressures in the deep lacustrine assemblage resulting in a genetically distinct biosphere from the surface dominated primarily by Bathyarchaeota and Atribacteria groups. However, similar to marine sediments, some dominant taxa in the shallow subsurface persisted into the subsurface as minor fraction of the community. The subsequent establishment of a deep subsurface community likely results from a combination of paleoenvironmental factors that have shaped the pool of available substrates, together with substrate depletion and/or reworking of organic matter with depth. PMID:29471361

Rheological Behavior of Xanthan Gum Solution Related to Shear Thinning Fluid Delivery for Subsurface Remediation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhong, Lirong; Oostrom, Martinus; Truex, Michael J.

Xanthan gum, a biopolymer, forms shear thinning fluids which can be used as delivery media to improve the distribution of remedial amendments injected into heterogeneous subsurface environments. The rheological behavior of the shear thinning solution needs to be known to develop an appropriate design for field injection. In this study, the rheological properties of xanthan gum solutions were obtained under various chemical and environmental conditions relevant to delivery of remedial amendments to groundwater. Higher xanthan concentration raised the absolute solution viscosity and increased the degree of shear thinning. Addition of remedial amendments (e.g., phosphate, sodium lactate, ethyl lactate) caused themore » dynamic viscosity of xanthan gum to decrease, but the solutions maintained shear-thinning properties. Use of simple salt (e.g. Na+, Ca2+) to increase the solution ionic strength also decreased the dynamic viscosity of xanthan and the degree of shear thinning, although the effect is a function of xanthan gum concentration and diminished as the xanthan gum concentration was increased. At high xanthan concentration, addition of salt to the solution increased dynamic viscosity. In the absence of sediments, xanthan gum solutions maintain their viscosity properties for months. However, xanthan gum solutions were shown to lose dynamic viscosity over a period of days to weeks when contacted with saturated site sediment. Loss of viscosity is attributed to physical and biodegradation processes.« less

Liquefaction and soil failure during 1994 northridge earthquake

USGS Publications Warehouse

Holzer, T.L.

1999-01-01

The 1994 Northridge, Calif., earthquake caused widespread permanent ground deformation on the gently sloping alluvial fan surface of the San Fernando Valley. The ground cracks and distributed deformation damaged both pipelines and surface structures. To evaluate the mechanism of soil failure, detailed subsurface investigations were conducted at four sites. Three sites are underlain by saturated sandy silts with low standard penetration test and cone penetration test values. These soils are similar to those that liquefied during the 1971 San Fernando earthquake, and are shown by widely used empirical relationships to be susceptible to liquefaction. The remaining site is underlain by saturated clay whose undrained shear strength is approximately half the value of the earthquake-induced shear stress at this location. This study demonstrates that the heterogeneous nature of alluvial fan sediments in combination with variations in the ground-water table can be responsible for complex patterns of permanent ground deformation. It may also help to explain some of the spatial variability of strong ground motion observed during the 1994 earthquake. ?? ASCE,.

The nature and function of microbial enzymes in subsurface marine sediments

NASA Astrophysics Data System (ADS)

Steen, A. D.; Schmidt, J.

2016-02-01

Isotopic and genomic evidence indicates that marine sediments contain populations of active heterotrophic microorganisms which appear to metabolize old, detrital, apparently recalcitrant organic matter. In surface communities, heterotrophs use extracellular enzymes to access complex organic matter. In subsurface sediments, in which microbial doubling times can be on the order of hundreds or thousands of years, it is not clear whether extracellular enzymes could remain stable and active long enough to constitute a 'profitable' stragtegy for accessing complex organic carbon. Here we present evidence that a wide range of extracellular enzyme are active in subsurface sediments from two different environments: the White Oak River, NC, and deep (up to 80 m) sediments of the Baltic Sea Basin recovered from IODP Expedition 347. In the White Oak River, enzymes from deeper sediments appear to be better-adapted to highly-degraded organic matter than enzymes from surface sediments. In the Baltic Sea, preliminary data suggest that enzymes related to nitrogen acquisition are preferentially expressed. By characterizing the extracellular enzymes present in marine sediments, we hope to achieve a better understanding of the mechanisms that control sedimentary organic matter remineralization and preservation.

Microbial community assembly and evolution in subseafloor sediment.

PubMed

Starnawski, Piotr; Bataillon, Thomas; Ettema, Thijs J G; Jochum, Lara M; Schreiber, Lars; Chen, Xihan; Lever, Mark A; Polz, Martin F; Jørgensen, Bo B; Schramm, Andreas; Kjeldsen, Kasper U

2017-03-14

Bacterial and archaeal communities inhabiting the subsurface seabed live under strong energy limitation and have growth rates that are orders of magnitude slower than laboratory-grown cultures. It is not understood how subsurface microbial communities are assembled and whether populations undergo adaptive evolution or accumulate mutations as a result of impaired DNA repair under such energy-limited conditions. Here we use amplicon sequencing to explore changes of microbial communities during burial and isolation from the surface to the >5,000-y-old subsurface of marine sediment and identify a small core set of mostly uncultured bacteria and archaea that is present throughout the sediment column. These persisting populations constitute a small fraction of the entire community at the surface but become predominant in the subsurface. We followed patterns of genome diversity with depth in four dominant lineages of the persisting populations by mapping metagenomic sequence reads onto single-cell genomes. Nucleotide sequence diversity was uniformly low and did not change with age and depth of the sediment. Likewise, there was no detectable change in mutation rates and efficacy of selection. Our results indicate that subsurface microbial communities predominantly assemble by selective survival of taxa able to persist under extreme energy limitation.

Use of vertical temperature gradients for prediction of tidal flat sediment characteristics

USGS Publications Warehouse

Miselis, Jennifer L.; Holland, K. Todd; Reed, Allen H.; Abelev, Andrei

2012-01-01

Sediment characteristics largely govern tidal flat morphologic evolution; however, conventional methods of investigating spatial variability in lithology on tidal flats are difficult to employ in these highly dynamic regions. In response, a series of laboratory experiments was designed to investigate the use of temperature diffusion toward sediment characterization. A vertical thermistor array was used to quantify temperature gradients in simulated tidal flat sediments of varying compositions. Thermal conductivity estimates derived from these arrays were similar to measurements from a standard heated needle probe, which substantiates the thermistor methodology. While the thermal diffusivities of dry homogeneous sediments were similar, diffusivities for saturated homogeneous sediments ranged approximately one order of magnitude. The thermal diffusivity of saturated sand was five times the thermal diffusivity of saturated kaolin and more than eight times the thermal diffusivity of saturated bentonite. This suggests that vertical temperature gradients can be used for distinguishing homogeneous saturated sands from homogeneous saturated clays and perhaps even between homogeneous saturated clay types. However, experiments with more realistic tidal flat mixtures were less discriminating. Relationships between thermal diffusivity and percent fines for saturated mixtures varied depending upon clay composition, indicating that clay hydration and/or water content controls thermal gradients. Furthermore, existing models for the bulk conductivity of sediment mixtures were improved only through the use of calibrated estimates of homogeneous end-member conductivity and water content values. Our findings suggest that remotely sensed observations of water content and thermal diffusivity could only be used to qualitatively estimate tidal flat sediment characteristics.

Geophysical monitoring of organic contaminants in sediments

NASA Astrophysics Data System (ADS)

Zhang, C.; Jennings, J.

2016-12-01

Soil and groundwater contamination pose threats to the health of human and the environment. Successful contaminant remediation requires effective in situ monitoring of physical, chemical, and biological processes in the subsurface. Minimally invasive geophysical methods have shown promise in characterizing organic contaminants in soil and groundwater and have been applied to monitor remediation processes. This study examines the sensitivity of low field proton nuclear magnetic resonance (NMR) and complex conductivity to the presence of organic contaminants in sediments. We aim to improve understanding of relationships between NMR and complex conductivity observables and hydrological properties of the sediments, as well as the amount and state of contaminants in porous media. We used toluene as a representative organic contaminant, and pure silica sands and montmorillonite clay as synthetic sediments. Sand-clay mixtures with various sand/clay ratios were prepared and saturated with different concentration of toluene. Relationships between the compositions of porous media, hydrocarbon concentration, and hydrological properties of sediments and geophysical response were investigated. The results from NMR relaxation time (T2) measurements reveal the dominant control of clay content on T2 relaxation, establish minimum toluene detectability, and demonstrate the effect of contaminant concentration on NMR signals. The diffusion-relaxation (D-T2) correlation measurement show toluene can be resolved from toluene-water mixture in sand-clay mixture. The results from ongoing complex conductivity measurements will also be presented and discussed.

Plasmid incidence in bacteria from deep subsurface sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, J.K.; Hicks, R.J.; Li, S.W.

Bacteria were isolated from deep terrestrial subsurface sediments underlying the coastal plain of South Carolina. A total of 163 isolates from deep sediments, surface soil, and return drill muds were examined for plasmid DNA content and resistance to the antibiotics penicillin, ampicillin, carbenicillin, streptomycin, kanamycin, and tetracycline. MICs of Cu{sup 2+}, Cr{sup 3+}, and Hg{sup 2+} for each isolate were also determined. The overall frequency of plasmid occurrence in the subsurface bacteria was 33%. Resistance was most frequent to penicillin (70% of all isolates), ampicillin (49%), and carbenicillin (32%) and was concluded to be related to the concentrations of themore » individual antibiotics in the disks used for assaying resistance and to the production of low levels of {beta}-lactamase. The frequencies of resistance to penicillin and ampicillin were significantly greater for isolates bearing plasmids than for plasmidless isolates; however, resistance was not transferable to penicillin-sensitive Escherichia coli. Hybridization of subsurface bacterial plasmids and chromosomal DNA with a whole-TOL-plasmid (pWWO) probe revealed some homology of subsurface bacterial plasmid and chromosomal DNAs, indicating a potential for those bacterial to harbor catabolic genes on plasmids or chromosomes. The incidences of antibiotic resistance and MICs of metals for subsurface bacteria were significantly different from those drill mud bacteria, ruling out the possibility that bacteria from sediments were derived from drill muds.« less

Shallow subsurface storm flow in a forested headwater catchment: Observations and modeling using a modified TOPMODEL

USGS Publications Warehouse

Scanlon, Todd M.; Raffensperger, Jeff P.; Hornberger, George M.; Clapp, Roger B.

2000-01-01

Transient, perched water tables in the shallow subsurface are observed at the South Fork Brokenback Run catchment in Shenandoah National Park, Virginia. Crest piezometers installed along a hillslope transect show that the development of saturated conditions in the upper 1.5 m of the subsurface is controlled by total precipitation and antecedent conditions, not precipitation intensity, although soil heterogeneities strongly influence local response. The macroporous subsurface storm flow zone provides a hydrological pathway for rapid runoff generation apart from the underlying groundwater zone, a conceptualization supported by the two‐storage system exhibited by hydrograph recession analysis. A modified version of TOPMODEL is used to simulate the observed catchment dynamics. In this model, generalized topographic index theory is applied to the subsurface storm flow zone to account for logarithmic storm flow recessions, indicative of linearly decreasing transmissivity with depth. Vertical drainage to the groundwater zone is required, and both subsurface reservoirs are considered to contribute to surface saturation.

An evaluation of the relative quality of dike pools for benthic macroinvertebrates in the Lower Missouri River, USA

USGS Publications Warehouse

Poulton, B.C.; Allert, A.L.

2012-01-01

A habitat-based aquatic macroinvertebrate study was initiated in the Lower Missouri River to evaluate relative quality and biological condition of dike pool habitats. Water-quality and sediment-quality parameters and macroinvertebrate assemblage structure were measured from depositional substrates at 18 sites. Sediment porewater was analysed for ammonia, sulphide, pH and oxidation-reduction potential. Whole sediments were analysed for particle-size distribution, organic carbon and contaminants. Field water-quality parameters were measured at subsurface and at the sediment-water interface. Pool area adjacent and downstream from each dike was estimated from aerial photography. Macroinvertebrate biotic condition scores were determined by integrating the following indicator response metrics: % of Ephemeroptera (mayflies), % of Oligochaeta worms, Shannon Diversity Index and total taxa richness. Regression models were developed for predicting macroinvertebrate scores based on individual water-quality and sediment-quality variables and a water/sediment-quality score that integrated all variables. Macroinvertebrate scores generated significant determination coefficients with dike pool area (R2=0.56), oxidation–reduction potential (R2=0.81) and water/sediment-quality score (R2=0.71). Dissolved oxygen saturation, oxidation-reduction potential and total ammonia in sediment porewater were most important in explaining variation in macroinvertebrate scores. The best two-variable regression models included dike pool size + the water/sediment-quality score (R2=0.84) and dike pool size + oxidation-reduction potential (R2=0.93). Results indicate that dike pool size and chemistry of sediments and overlying water can be used to evaluate dike pool quality and identify environmental conditions necessary for optimizing diversity and productivity of important aquatic macroinvertebrates. A combination of these variables could be utilized for measuring the success of habitat enhancement activities currently being implemented in this system.

Concentrations of inorganic arsenic in groundwater, agricultural soils and subsurface sediments from the middle Gangetic plain of Bihar, India.

PubMed

Kumar, Manoj; Ramanathan, A L; Rahman, Mohammad Mahmudur; Naidu, Ravi

2016-12-15

Concentrations of inorganic forms [arsenite, As(III) and arsenate, As(V) of arsenic (As) present in groundwater, agricultural soils and subsurface sediments located in the middle Gangetic plain of Bihar, India were determined. Approximately 73% of the groundwater samples (n=19) show As(III) as the dominant species while 27% reveals As(V) was the dominant species. The concentration of As(III) in agricultural soil samples varies from not detectable to 40μg/kg and As(V) was observed as the major species (ranging from 1050 to 6835μg/kg) while the total As concentration varied from 3528 to 14,690μg/kg. Total extracted concentration of As was higher in the subsurface sediments (range 9119-20,056μg/kg in Methrapur and 4788-19,681μg/kg in Harail Chapar) than the agricultural soil, indicating the subsurface sediment as a source of As. Results of X-ray diffraction (XRD) and environmental scanning electron microscope (ESEM) revealed the presence of hematite and goethite throughout the vertical section below while magnetite was observed only in the upper oxidized layer at Methrapur and Harail Chapar. Alteration of Fe-oxides and presence of fibrous goethite indicating presence of diagenetic sediment. Siderite plays a crucial role as sinks to the As in subsurface sediments. The study also concluded that decomposition of organic matter present in dark and grey sections promote the redox conditions and trigger mobilization of As into groundwater. Copyright © 2016 Elsevier B.V. All rights reserved.

Microbial Communities and Organic Matter Composition in Surface and Subsurface Sediments of the Helgoland Mud Area, North Sea

PubMed Central

Oni, Oluwatobi E.; Schmidt, Frauke; Miyatake, Tetsuro; Kasten, Sabine; Witt, Matthias; Hinrichs, Kai-Uwe; Friedrich, Michael W.

2015-01-01

The role of microorganisms in the cycling of sedimentary organic carbon is a crucial one. To better understand relationships between molecular composition of a potentially bioavailable fraction of organic matter and microbial populations, bacterial and archaeal communities were characterized using pyrosequencing-based 16S rRNA gene analysis in surface (top 30 cm) and subsurface/deeper sediments (30–530 cm) of the Helgoland mud area, North Sea. Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR MS) was used to characterize a potentially bioavailable organic matter fraction (hot-water extractable organic matter, WE-OM). Algal polymer-associated microbial populations such as members of the Gammaproteobacteria, Bacteroidetes, and Verrucomicrobia were dominant in surface sediments while members of the Chloroflexi (Dehalococcoidales and candidate order GIF9) and Miscellaneous Crenarchaeota Groups (MCG), both of which are linked to degradation of more recalcitrant, aromatic compounds and detrital proteins, were dominant in subsurface sediments. Microbial populations dominant in subsurface sediments (Chloroflexi, members of MCG, and Thermoplasmata) showed strong correlations to total organic carbon (TOC) content. Changes of WE-OM with sediment depth reveal molecular transformations from oxygen-rich [high oxygen to carbon (O/C), low hydrogen to carbon (H/C) ratios] aromatic compounds and highly unsaturated compounds toward compounds with lower O/C and higher H/C ratios. The observed molecular changes were most pronounced in organic compounds containing only CHO atoms. Our data thus, highlights classes of sedimentary organic compounds that may serve as microbial energy sources in methanic marine subsurface environments. PMID:26635758

On the non-uniqueness of the hydro-geomorphic responses in a zero-order catchment with respect to soil moisture

NASA Astrophysics Data System (ADS)

Kim, Jongho; Dwelle, M. Chase; Kampf, Stephanie K.; Fatichi, Simone; Ivanov, Valeriy Y.

2016-06-01

This study advances mechanistic interpretation of predictability challenges in hydro-geomorphology related to the role of soil moisture spatial variability. Using model formulations describing the physics of overland flow, variably saturated subsurface flow, and erosion and sediment transport, this study explores (1) why a basin with the same mean soil moisture can exhibit distinctly different spatial moisture distributions, (2) whether these varying distributions lead to non-unique hydro-geomorphic responses, and (3) what controls non-uniqueness in relation to the response type. Two sets of numerical experiments are carried out with two physically-based models, HYDRUS and tRIBS+VEGGIE+FEaST, and their outputs are analyzed with respect to pre-storm moisture state. The results demonstrate that distinct spatial moisture distributions for the same mean wetness arise because near-surface soil moisture dynamics exhibit different degrees of coupling with deeper-soil moisture and the process of subsurface drainage. The consequences of such variations are different depending on the type of hydrological response. Specifically, if the predominant runoff response is of infiltration excess type, the degree of non-uniqueness is related to the spatial distribution of near-surface moisture. If runoff is governed by subsurface stormflow, the extent of deep moisture contributing area and its "readiness to drain" determine the response characteristics. Because the processes of erosion and sediment transport superimpose additional controls over factors governing runoff generation and overland flow, non-uniqueness of the geomorphic response can be highly dampened or enhanced. The explanation is sediment composed by multi-size particles can alternate states of mobilization or surface shielding and the transient behavior is inherently intertwined with the availability of mobile particles. We conclude that complex nonlinear dynamics of hydro-geomorphic processes are inherent expressions of physical interactions. As complete knowledge of watershed properties, states, or forcings will always present the ultimate, if ever resolvable, challenge, deterministic predictability will remain handicapped. Coupling of uncertainty quantification methods and space-time physics-based approaches will need to evolve to facilitate mechanistic interpretations and informed practical applications.

Extremely halophilic archaea from ancient salt sediments and their possible survival in halite fluid inclusions

NASA Astrophysics Data System (ADS)

Stan-Lotter, H.; Fendrihan, S.; Gerbl, F. W.; Dornmayr-Pfaffenhuemer, M.; Frethem, C.

2008-09-01

Halophilic archaebacteria (haloarchaea) thrive in environments with salt concentrations approaching saturation, such as natural brines, marine solar salterns and alkaline salt lakes; they have also been isolated from ancient subsurface salt sediments of great geological age (195-280 million years) and some of those strains were described as novel species (1). The cells survived perhaps while being enclosed within small fluid inclusions in the halite. The characterization of subsurface microbial life is of astrobiological relevance since extraterrestrial halite has been detected and since microbial life on Mars, if existent, may have retreated into the subsurface. We attempted to simulate the embedding process of extremely halophilic archaea and to analyse any cellular changes which might occur. When enclosing haloarchaea in laboratory grown halite, cells accumulated preferentially in fluid inclusions, as could be demonstrated by pre-staining with fluorescent dyes. With increased time of embedding, rod-shaped cells of Halobacterium salinarum strains were found to assume roundish morphologies. Upon dissolution of the salt crystals, these spheres were stable and viable for months when kept in buffers containing 4 M NaCl. Scanning electron microscopy (SEM) following fixation with glutaraldehyde suggested a potentially gradual transformation from rods to spheres. This notion was supported by fluorescence microscopy of Halobacterium cells, following embedding in halite and staining with SYTO 9. One-dimensional protein patterns of rods and spheres, following SDS polyacrylamide gel electrophoresis, were similar except that the S-layer protein appeared reduced by about 15 - 20 % in spheres. The reddish-orange pigmentation of spheres was much lighter compared to that of rod-shaped cells, suggesting lowered concentrations of carotenoids; this was confirmed by extraction and spectrometry of pigments. The data suggested that Halobacterium cells are capable of forming specific cellular structures upon embedding in fluid inclusions of halite. It is tempting to speculate that such structures may be responsible for long term survival in ancient geological materials such as salt sediments, including extraterrestrial salt. (1) Fendrihan S., Legat A., Pfaffenhuemer M., Gruber C., Weidler W., Gerbl F.W., Stan-Lotter H. (2006) Extremely halophilic archaea and the issue of long-term microbial survival. Reviews in Environmental Science and Bio/technology 5, 1569-1605.

The water retention curve and relative permeability for gas production from hydrate-bearing sediments: pore-network model simulation

NASA Astrophysics Data System (ADS)

Mahabadi, Nariman; Dai, Sheng; Seol, Yongkoo; Sup Yun, Tae; Jang, Jaewon

2016-08-01

The water retention curve and relative permeability are critical to predict gas and water production from hydrate-bearing sediments. However, values for key parameters that characterize gas and water flows during hydrate dissociation have not been identified due to experimental challenges. This study utilizes the combined techniques of micro-focus X-ray computed tomography (CT) and pore-network model simulation to identify proper values for those key parameters, such as gas entry pressure, residual water saturation, and curve fitting values. Hydrates with various saturation and morphology are realized in the pore-network that was extracted from micron-resolution CT images of sediments recovered from the hydrate deposit at the Mallik site, and then the processes of gas invasion, hydrate dissociation, gas expansion, and gas and water permeability are simulated. Results show that greater hydrate saturation in sediments lead to higher gas entry pressure, higher residual water saturation, and steeper water retention curve. An increase in hydrate saturation decreases gas permeability but has marginal effects on water permeability in sediments with uniformly distributed hydrate. Hydrate morphology has more significant impacts than hydrate saturation on relative permeability. Sediments with heterogeneously distributed hydrate tend to result in lower residual water saturation and higher gas and water permeability. In this sense, the Brooks-Corey model that uses two fitting parameters individually for gas and water permeability properly capture the effect of hydrate saturation and morphology on gas and water flows in hydrate-bearing sediments.

Actinobacterial diversity across a marine transgression in the deep subsurface off Shimokita Peninsula, Japan

NASA Astrophysics Data System (ADS)

Harrison, B. K.; Bailey, J. V.

2013-12-01

Sediment horizons represent a significant - but not permanent - barrier to microbial transport. Cells commonly attach to mineral surfaces in unconsolidated sediments. However, by taxis, growth, or passive migration under advecting fluids, some portion of the microbial community may transgress sedimentary boundaries. Few studies have attempted to constrain such transport of community signatures in the marine subsurface and its potential impact on biogeography. Integrated Ocean Drilling Program (IODP) Expedition 337 off the Shimokita Peninsula recovered sediments over a greater than 1km interval representing a gradual decrease of terrestrial influence, from tidal to continental shelf depositional settings. This sequence represents a key opportunity to link subsurface microbial communities to lithological variability and investigate the permanence of community signatures characteristic of distinct depositional regimes. The phylogenetic connectivity between marine and terrestrially-influenced deposits may demonstrate to what degree sediments offer a substantial barrier to cell transport in the subsurface. Previous work has demonstrated that the Actinobacterial phylum is broadly distributed in marine sediments (Maldonado et al., 2005), present and active in the deep subsurface (Orsi et al., 2013), and that marine and terrestrial lineages may potentially be distinguished by 16S rRNA gene sequencing (e.g. Prieto-Davó et al., 2013). We report on Actinobacteria-specific 16S rRNA gene diversity recovered between 1370 and 2642 mbsf with high-throughput sequencing using the Illumina MiSeq platform, as well as selective assembly and analysis of environmental clone libraries.

Colloid formation in Hanford sediments reacted with simulated tank waste.

PubMed

Mashal, Kholoud; Harsh, James B; Flury, Markus; Felmy, Andrew R; Zhao, Hongting

2004-11-01

Solutions of high pH, ionic strength, and aluminum concentration have leaked into the subsurface from underground waste storage tanks atthe Hanford Reservation in Washington State. Here, we test the hypothesis that these waste solutions alter and dissolve the native minerals present in the sediments and that colloidal (diameter < 2 microm) feldspathoids form. We reacted Hanford sediments with simulated solutions representative of Hanford waste tanks. The solutions consisted of 1.4 or 2.8 mol/kg NaOH, 0.125 or 0.25 mol/kg NaAlO4, and 3.7 mol/kg NaNO3 and were contacted with the sediments for a period of 25 or 40 days at 50 degrees C. The colloidal size fraction was separated from the sediments and characterized in terms of mineralogy, morphology, chemical composition, and electrophoretic mobility. Upon reaction with tank waste solutions, native minerals released Si and other elements into the solution phase. This Si precipitated with the Al present in the waste solutions to form secondary minerals, identified as the feldspathoids cancrinite and sodalite. The solution phase was modeled with the chemical equilibrium model GMIN for solution speciation and saturation indices with respect to sodalite and cancrinite. The amount of colloidal material in the sediments increased upon reaction with waste solutions. At the natural pH found in Hanford sediments (pH 8) the newly formed minerals are negatively charged, similar to the unreacted colloidal material present in the sediments. The formation of colloidal material in Hanford sediments upon reaction with tank waste solutions is an important aspect to consider in the characterization of Hanford tank leaks and may affect the fate of hazardous radionuclides present in the tank waste.

Subsurface drainage processes and management impacts

Treesearch

Elizabeth T. Keppeler; David Brown

1998-01-01

Storm-induced streamflow in forested upland watersheds is linked to rainfall by transient, variably saturated flow through several different flow paths. In the absence of exposed bedrock, shallow flow-restrictive layers, or compacted soil surfaces, virtually all of the infiltrated rainfall reaches the stream as subsurface flow. Subsurface runoff can occur within...

In-Well Sediment Incubators to Evaluate Microbial Community Stability and Dynamics following Bioimmobilization of Uranium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baldwin, Brett R.; Peacock, Aaron D.; Gan, M.

2009-09-23

An in-situ incubation device (ISI) was developed in order to investigate the stability and dynamics of sediment associated microbial communities to prevailing subsurface oxidizing or reducing conditions. Here we describe the use of these devices at the Old Rifle Uranium Mill Tailings Remedial Action (UMTRA) site. During the 7 month deployment oxidized Rifle aquifer background sediments (RABS) were deployed in previously biostimulated wells under iron reducing conditions, cell densities of known iron reducing bacteria including Geobacteraceae increased significantly showing the microbial community response to local subsurface conditions. PLFA profiles of RABS following in situ deployment were strikingly similar to thosemore » of adjacent sediment cores suggesting ISI results could be extrapolated to the native material of the test plots. Results for ISI deployed reduced sediments showed only slight changes in community composition and pointed toward the ability of the ISIs to monitor microbial community stability and response to subsurface conditions.« less

High-resolution InSAR constraints on flood-related subsidence and evaporite dissolution along the Dead Sea shores: Interplay between hydrology and rheology

NASA Astrophysics Data System (ADS)

Shviro, Maayan; Haviv, Itai; Baer, Gidon

2017-09-01

Sinkhole generation and land subsidence are commonly attributed to dissolution of subsurface layers by under-saturated groundwater and formation of cavities. Along the Dead Sea (DS) shorelines, this process also involves seasonal flash floods that are drained into the subsurface by existing and newly formed sinkholes. We quantify the contribution of flash-floods to salt dissolution and land subsidence using high-resolution interferometric synthetic aperture radar (InSAR). Subsidence rates during a 3-year period (2012-2015) were calculated from 57 COSMO SkyMed X-band interferograms bracketing major flood events and intra-flood periods in 21 sinkhole sites. The sites are located within channels and alluvial fans along the western shores of the Dead Sea, Israel. The observed subsidence reaches maximum rates of 2.5 mm/day, accumulating in specific sites to 500 mm/year. In most of the sinkhole sites a gradual increase in the annual subsidence rate is observed during the 3-year study period. Three different modes of response to floods were observed: (1) sites where floodwater is not directly channeled into sinkholes do not respond to floods; (2) sites adjacent to active channels with sinkholes are unaffected by specific floods but their subsidence rates increase gradually from early winter to mid-summer, and decay gradually until the following winter; and (3) sites in active channels with sinkholes are characterized by an abrupt increase in subsidence rates immediately after each flood (by a factor of up to 20) and by a subsequent quasi-exponential subsidence decay over periods of several months. In these latter sites, subsidence rates after each flood are temporally correlated with alternating groundwater levels in adjacent boreholes. The rapid rise in groundwater head following floods increases the hydraulic gradient of the under-saturated groundwater and hence also the groundwater discharge and the dissolution rate of the subsurface salt layer. A subsequent quasi-exponential water level drop results in similar deceleration in dissolution and subsidence rates, with a similar characteristic decay time of about 150 days. The observed subsidence decay pattern may also be explained by viscoelastic relaxation of the overburden in response to instantaneously-formed dissolution cavities. Utilizing a Kelvin viscoelastic model, we show that the contribution of this process is most probably < 30% of the total observed subsidence and is sensitive to the sediment mechanical properties. On a broader scale, this study demonstrates how high-resolution InSAR measurements can improve our understanding of subsurface dissolution and subsidence processes and provide independent constraints on the mechanical properties of heterogeneous alluvial sediments.

A New Sensitive GC-MS-based Method for Analysis of Dipicolinic Acid and Quantifying Bacterial Endospores in Deep Marine Subsurface Sediment

NASA Astrophysics Data System (ADS)

Fang, J.

2015-12-01

Marine sediments cover more than two-thirds of the Earth's surface and represent a major part of the deep biosphere. Microbial cells and microbial activity appear to be widespread in these sediments. Recently, we reported the isolation of gram-positive anaerobic spore-forming piezophilic bacteria and detection of bacterial endospores in marine subsurface sediment from the Shimokita coalbed, Japan. However, the modern molecular microbiological methods (e.g., DNA-based microbial detection techniques) cannot detect bacterial endospore, because endospores are impermeable and are not stained by fluorescence DNA dyes or by ribosomal RNA staining techniques such as catalysed reporter deposition fluorescence in situ hybridization. Thus, the total microbial cell abundance in the deep biosphere may has been globally underestimated. This emphasizes the need for a new cultivation independent approach for the quantification of bacterial endospores in the deep subsurface. Dipicolinic acid (DPA, pyridine-2,6-dicarboxylic acid) is a universal and specific component of bacterial endospores, representing 5-15wt% of the dry spore, and therefore is a useful indicator and quantifier of bacterial endospores and permits to estimate total spore numbers in the subsurface biosphere. We developed a sensitive analytical method to quantify DPA content in environmental samples using gas chromatography-mass spectrometry. The method is sensitive and more convenient in use than other traditional methods. We applied this method to analyzing sediment samples from the South China Sea (obtained from IODP Exp. 349) to determine the abundance of spore-forming bacteria in the deep marine subsurface sediment. Our results suggest that gram-positive, endospore-forming bacteria may be the "unseen majority" in the deep biosphere.

Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin

PubMed Central

Vigneron, Adrien; Cruaud, Perrine; Roussel, Erwan G.; Pignet, Patricia; Caprais, Jean-Claude; Callac, Nolwenn; Ciobanu, Maria-Cristina; Godfroy, Anne; Cragg, Barry A.; Parkes, John R.; Van Nostrand, Joy D.; He, Zhili; Zhou, Jizhong; Toffin, Laurent

2014-01-01

Subsurface sediments of the Sonora Margin (Guaymas Basin), located in proximity of active cold seep sites were explored. The taxonomic and functional diversity of bacterial and archaeal communities were investigated from 1 to 10 meters below the seafloor. Microbial community structure and abundance and distribution of dominant populations were assessed using complementary molecular approaches (Ribosomal Intergenic Spacer Analysis, 16S rRNA libraries and quantitative PCR with an extensive primers set) and correlated to comprehensive geochemical data. Moreover the metabolic potentials and functional traits of the microbial community were also identified using the GeoChip functional gene microarray and metabolic rates. The active microbial community structure in the Sonora Margin sediments was related to deep subsurface ecosystems (Marine Benthic Groups B and D, Miscellaneous Crenarchaeotal Group, Chloroflexi and Candidate divisions) and remained relatively similar throughout the sediment section, despite defined biogeochemical gradients. However, relative abundances of bacterial and archaeal dominant lineages were significantly correlated with organic carbon quantity and origin. Consistently, metabolic pathways for the degradation and assimilation of this organic carbon as well as genetic potentials for the transformation of detrital organic matters, hydrocarbons and recalcitrant substrates were detected, suggesting that chemoorganotrophic microorganisms may dominate the microbial community of the Sonora Margin subsurface sediments. PMID:25099369

77 FR 14717 - National Oil and Hazardous Substances Pollution Contingency Plan; National Priorities List...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-13

... preclude future actions under Superfund. This partial deletion pertains to the surface soil, unsaturated subsurface soil, surface water and sediments of Operable Unit (OU) 1, the Gateway Lake Ash Study Area, and.... Surface soil, unsaturated subsurface soil, surface water, and sediments at OU-2, OU-3, OU-4, OU-5, OU-6...

Effect of replacing surface inlets with blind or gravel inlets on sediment and phosphorus subsurface drainage losses

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine whether modifying open inlets by burying them in gravel capped with 30 cm of sandy clay loam soil or in ve...

Bubbles in Sediments

DTIC Science & Technology

1999-09-30

saturated poroelastic medium. The transition matrix scattering formalism was used to develop the scattered acoustic field(s) such that appropriate...sediment increases from a fluid model (simplest) to a fluid-saturated poroelastic model (most complex). Laboratory experiments in carefully quantified...of a linear acoustic field from a bubble, collection of bubbles, or other targets embedded in a fluid-saturated sediment are not well known. This

Exploring Microbial Life in Oxic Sediments Underlying Oligotrophic Ocean Gyres

NASA Astrophysics Data System (ADS)

Ziebis, W.; Orcutt, B.; Wankel, S. D.; D'Hondt, S.; Szubin, R.; Kim, J. N.; Zengler, K.

2015-12-01

Oxygen, carbon and nutrient availability are defining parameters for microbial life. In contrast to organic-rich sediments of the continental margins, where high respiration rates lead to a depletion of O2 within a thin layer at the sediment surface, it was discovered that O2 penetrates several tens of meters into organic-poor sediments underlying oligotrophic ocean gyres. In addition, nitrate, another important oxidant, which usually disappears rapidly with depth in anoxic sediments, tends to accumulate above seawater concentrations in the oxic subsurface, reflecting the importance of nitrogen cycling processes, including both nitrification and denitrification. Two IODP drilling expeditions were vital for exploring the nature of the deep subsurface beneath oligotrophic ocean gyres, expedition 329 to the South Pacific Gyre (SPG) and expedition 336 to North Pond, located on the western flank of the Mid-Atlantic ridge beneath the North Atlantic Gyre. Within the ultra-oligotrophic SPG O2 penetrates the entire sediment column from the sediment-water interface to the underlying basement to depths of > 75 m. At North Pond, a topographic depression filled with sediment and surrounded by steep basaltic outcrops, O2 penetrates deeply into the sediment (~ 30 m) until it eventually becomes depleted. O2 also diffuses upward into the sediment from seawater circulating within the young crust underlying the sediment, resulting in a deep oxic layer several meters above the basalt. Despite low organic carbon contents microbial cells persist throughout the entire sediment column within the SPG (> 75 m) and at North Pond, albeit at low abundances. We explored the nature of the subsurface microbial communities by extracting intact cells from large volumes of sediment obtained from drill cores of the two expeditions. By using CARD-FiSH, amplicon (16s rRNA) and metagenome sequencing we shed light on the phylogenetic and functional diversity of the elusive communities residing in the deep oxic sediments of these two different areas. Given the global extent of this oxic subsurface studies of the diversity and metabolic potential of its biome, together with the analyses of porewater geochemical and isotopic composition, are beginning to reveal its role in global biogeochemical cycles.

Active Marine Subsurface Bacterial Population Composition in Low Organic Carbon Environments from IODP Expedition 320

NASA Astrophysics Data System (ADS)

Shepard, A.; Reese, B. K.; Mills, H. J.; IODP Expedition 320 Shipboard Science Party

2011-12-01

The marine subsurface environment contains abundant and active microorganisms. These microbial populations are considered integral players in the marine subsurface biogeochemical system with significance in global geochemical cycles and reservoirs. However, variations in microbial community structure, activity and function associated with the wide-ranging sedimentary and geochemical environments found globally have not been fully resolved. Integrated Ocean Drilling Program Expedition 320 recovered sediments from site U1332. Two sampling depths were selected for analysis that spanned differing lithological units in the sediment core. Sediments were composed of mostly clay with zeolite minerals at 8 meters below sea floor (mbsf). At 27 mbsf, sediments were composed of alternating clayey radiolarian ooze and nannofossil ooze. The concentration of SO42- had little variability throughout the core and the concentration of Fe2+ remained close to, or below, detection limits (0.4 μM). Total organic carbon content ranged from a low of 0.03 wt% to a high of 0.07 wt% between 6 and 30 mbsf providing an opportunity to evaluate marine subsurface microbial communities under extreme electron donor limiting conditions. The metabolically active fraction of the bacterial population was isolated by the extraction and amplification of 16S ribosomal RNA. Pyrosequencing of 16S rRNA transcripts and subsequent bioinformatic analyses provided a robust data set (15,931 total classified sequences) to characterize the community at a high resolution. As observed in other subsurface environments, the overall diversity of active bacterial populations decreased with depth. The population shifted from a diverse but evenly distributed community at approximately 8 mbsf to a Firmicutes dominated population at 27 mbsf (80% of sequences). A total of 95% of the sequences at 27 mbsf were grouped into three genera: Lactobacillus (phylum Firmicutes) at 80% of the total sequences, Marinobacter (phylum Proteobacteria) at 8%, and Formosa (phylum Bacteroidetes) at 7%. These lineages support a paradigm suggesting the importance of fermentation in the subsurface. However, this study extends the predicted range for fermentation below the shallow subsurface and into organic carbon limited marine sediments. Other previously characterized subsurface active populations from environments with higher organic carbon concentrations do not show similar levels of reduced diversity or predominance of fermentative populations. This study further emphasizes the spatial variability of microbial populations in the deep subsurface and highlights the need for continued exploration.

Electrical Resistivity Imaging of Seawater Intrusion into the Monterey Bay Aquifer System.

PubMed

Pidlisecky, A; Moran, T; Hansen, B; Knight, R

2016-03-01

We use electrical resistivity tomography to obtain a 6.8-km electrical resistivity image to a depth of approximately 150 m.b.s.l. along the coast of Monterey Bay. The resulting image is used to determine the subsurface distribution of saltwater- and freshwater-saturated sediments and the geologic controls on fluid distributions in the region. Data acquisition took place over two field seasons in 2011 and 2012. To maximize our ability to image both vertical and horizontal variations in the subsurface, a combination of dipole-dipole, Wenner, Wenner-gamma, and gradient measurements were made, resulting in a large final dataset of approximately 139,000 data points. The resulting resistivity section extends to a depth of 150 m.b.s.l., and is used, in conjunction with the gamma logs from four coastal monitoring wells to identify four dominant lithologic units. From these data, we are able to infer the existence of a contiguous clay layer in the southern portion of our transect, which prevents downward migration of the saltwater observed in the upper 25 m of the subsurface to the underlying freshwater aquifer. The saltwater and brackish water in the northern portion of the transect introduce the potential for seawater intrusion into the hydraulically connected freshwater aquifer to the south, not just from the ocean, but also laterally from north to south. © 2015, National Ground Water Association.

Targeting sediment management strategies using sediment quantification and fingerprinting methods

NASA Astrophysics Data System (ADS)

Sherriff, Sophie; Rowan, John; Fenton, Owen; Jordan, Phil; hUallacháin, Daire Ó.

2016-04-01

Cost-effective sediment management is required to reduce excessive delivery of fine sediment due to intensive land uses such as agriculture, resulting in the degradation of aquatic ecosystems. Prioritising measures to mitigate dominant sediment sources is, however, challenging, as sediment loss risk is spatially and temporally variable between and within catchments. Fluctuations in sediment supply from potential sources result from variations in land uses resulting in increased erodibility where ground cover is low (e.g., cultivated, poached and compacted soils), and physical catchment characteristics controlling hydrological connectivity and transport pathways (surface and/or sub-surface). Sediment fingerprinting is an evidence-based management tool to identify sources of in-stream sediments at the catchment scale. Potential sediment sources are related to a river sediment sample, comprising a mixture of source sediments, using natural physico-chemical characteristics (or 'tracers'), and contributions are statistically un-mixed. Suspended sediment data were collected over two years at the outlet of three intensive agricultural catchments (approximately 10 km2) in Ireland. Dominant catchment characteristics were grassland on poorly-drained soils, arable on well-drained soils and arable on moderately-drained soils. High-resolution (10-min) calibrated turbidity-based suspended sediment and discharge data were combined to quantify yield. In-stream sediment samples (for fingerprinting analysis) were collected at six to twelve week intervals, using time-integrated sediment samplers. Potential sources, including stream channel banks, ditches, arable and grassland field topsoils, damaged road verges and tracks were sampled, oven-dried (<40oC) and sieved (125 microns). Soil and sediment samples were analysed for mineral magnetics, geochemistry and radionuclide tracers, particle size distribution and soil organic carbon. Tracer data were corrected to account for particle size and organic matter selectivity processes. Contributions from potential sources type groups (channel - ditches and stream banks, roads - road verges and tracks, fields - grassland and arable topsoils) were statistically un-mixed using FR2000, an uncertainty-inclusive algorithm, and combined with sediment yield data. Results showed sediment contributions from channel, field and road groups were 70%, 25% and 5% in the poorly-drained catchment, 59%, 22% and 19% in the well-drained catchment, and 17%, 74% and 9% in the moderately-drained catchment. Higher channel contributions in the poorly-drained catchment were attributed to bank erosion accelerated by the rapid diversion of surface runoff into channels, facilitated by surface and sub-surface artificial drainage networks, and bank seepage from lateral pressure gradients due to confined groundwater. Despite the greatest proportion of arable soils in the well-drained catchment, this source was frequently hydrologically disconnected as well-drained soils largely infiltrated rainfall and prevented surface soil erosion. Periods of high and intense rainfall were associated with greater proportions of field losses in the well-drained catchment likely due to infiltration exceeding the saturated hydraulic conductivity of soils and establishment of surface hydrological connectivity. Losses from field topsoils dominated in the moderately-drained catchment as antecedent soil wetness maintained surface flow pathways and coincided with low groundcover on arable soils. For cost-effective management of sediment pressures to aquatic ecosystems, catchment specific variations in sediment sources must be considered.

Hydrate morphology: Physical properties of sands with patchy hydrate saturation

USGS Publications Warehouse

Dai, S.; Santamarina, J.C.; Waite, William F.; Kneafsey, T.J.

2012-01-01

The physical properties of gas hydrate-bearing sediments depend on the volume fraction and spatial distribution of the hydrate phase. The host sediment grain size and the state of effective stress determine the hydrate morphology in sediments; this information can be used to significantly constrain estimates of the physical properties of hydrate-bearing sediments, including the coarse-grained sands subjected to high effective stress that are of interest as potential energy resources. Reported data and physical analyses suggest hydrate-bearing sands contain a heterogeneous, patchy hydrate distribution, whereby zones with 100% pore-space hydrate saturation are embedded in hydrate-free sand. Accounting for patchy rather than homogeneous hydrate distribution yields more tightly constrained estimates of physical properties in hydrate-bearing sands and captures observed physical-property dependencies on hydrate saturation. For example, numerical modeling results of sands with patchy saturation agree with experimental observation, showing a transition in stiffness starting near the series bound at low hydrate saturations but moving toward the parallel bound at high hydrate saturations. The hydrate-patch size itself impacts the physical properties of hydrate-bearing sediments; for example, at constant hydrate saturation, we find that conductivity (electrical, hydraulic and thermal) increases as the number of hydrate-saturated patches increases. This increase reflects the larger number of conductive flow paths that exist in specimens with many small hydrate-saturated patches in comparison to specimens in which a few large hydrate saturated patches can block flow over a significant cross-section of the specimen.

Characterization of Gas-Hydrate Sediment: In Situ Evaluation of Hydrate Saturation in Pores of Pressured Sedimental Samples

NASA Astrophysics Data System (ADS)

Jin, Y.; Konno, Y.; Kida, M.; Nagao, J.

2014-12-01

Hydrate saturation of gas-hydrate bearing sediment is a key of gas production from natural gas-hydrate reservoir. Developable natural gas-hydrates by conventional gas/oil production apparatus almost exist in unconsolidated sedimental layer. Generally, hydrate saturations of sedimental samples are directly estimated by volume of gas generated from dissociation of gas hydrates in pore spaces, porosity data and volume of the sediments. Furthermore, hydrate saturation can be also assessed using velocity of P-wave through sedimental samples. Nevertheless, hydrate saturation would be changed by morphological variations (grain-coating, cementing and pore-filling model) of gas hydrates in pore spaces. Jin et al.[1,2] recently observed the O-H stretching bands of H2O molecules of methane hydrate in porous media using an attenuated total reflection IR (ATR-IR) spectra. They observed in situ hydrate formation/dissociation process in sandy samples (Tohoku Keisya number 8, grain size of ca. 110 μm). In this presentation, we present IR spectroscopy approach to in situ evaluation of hydrate saturation of pressured gas-hydrate sediments. This work was supported by funding from the Research Consortium for Methane Hydrate Resources in Japan (MH21 Research Consortium) planned by the Ministry of Economy, Trade and Industry (METI), Japan. [1] Jin, Y.; Konno, Y.; Nagao, J. Energy Fules, 2012, 26, 2242-2247. [2] Jin, Y.; Oyama, H.; Nagao, J. Jpn. J. Appl. Phys. 2009, 48, No. 108001.

Sedimentological Control on Hydrate Saturation Distribution in Arctic Gas-Hydrate-Bearing Deposits

NASA Astrophysics Data System (ADS)

Behseresht, J.; Peng, Y.; Bryant, S. L.

2010-12-01

Grain size variations along with the relative rates of fluid phases migrating into the zone of hydrate stability, plays an important role in gas-hydrate distribution and its morphologic characteristics. In the Arctic, strata several meters thick containing large saturations of gas hydrate are often separated by layers containing small but nonzero hydrate saturations. Examples are Mt. Elbert, Alaska and Mallik, NW Territories. We argue that this sandwich type hydrate saturation distribution is consistent with having a gas phase saturation within the sediment when the base of gas hydrate stability zone (BGHSZ) was located above the sediment package. The volume change during hydrate formation process derives movement of fluid phases into the GHSZ. We show that this fluid movement -which is mainly governed by characteristic relative permeability curves of the host sediment-, plays a crucial role in the amount of hydrate saturation in the zone of major hydrate saturation. We develop a mechanistic model that enables estimating the final hydrate saturation from an initial gas/water saturation in sediment with known relative permeability curves. The initial gas/water saturation is predicted using variation of capillary entry pressure with depth, which in turn depends on the variation in grain-size distribution. This model provides a mechanistic approach for explaining large hydrate saturations (60%-75%) observed in zones of major hydrate saturation considering the governing characteristic relative permeability curves of the host sediments. We applied the model on data from Mount Elbert well on the Alaskan North Slope. It is shown that, assuming a cocurrent flow of gas and water into the GHSZ, such large hydrate saturations (up to 75%) cannot result from large initial gas saturations (close to 1-Sw,irr) due to limitations on water flux imposed by typical relative permeability curves. They could however result from modest initial gas saturations (ca. 40%) at which we have reasonable phase mobility ratios required for appropriate relative rates of gas and water transporting into GHSZ to form large hydrate saturations. Nevertheless, from the profile of capillary entry pressure vs. depth, we expect large initial gas saturations and thus the final high hydrate saturation suggests another form of water flow: water moves down through accumulated hydrate from the unfrozen water above. For this to happen the water phase must remain connected within the hydrate-bearing sediment. This seems plausible in hydrate bearing sediments because hydrate formation will be stopped before water saturation gets to very low values (lower than Sw,irr) due to salinity build up. The location of small hydrate saturations (10-15%) is consistent with the location of the residual gas phase established during water imbibition into these locations while they serve as a gas source to the layers above.

Strength Estimation for Hydrate-Bearing Sediments From Direct Shear Tests of Hydrate-Bearing Sand and Silt

NASA Astrophysics Data System (ADS)

Liu, Zhichao; Dai, Sheng; Ning, Fulong; Peng, Li; Wei, Houzhen; Wei, Changfu

2018-01-01

Safe and economic methane gas production, as well as the replacement of methane while sequestering carbon in natural hydrate deposits, requires enhanced geomechanical understanding of the strength and volume responses of hydrate-bearing sediments during shear. This study employs a custom-made apparatus to investigate the mechanical and volumetric behaviors of carbon dioxide hydrate-bearing sediments subjected to direct shear. The results show that both peak and residual strengths increase with increased hydrate saturation and vertical stress. Hydrate contributes mainly the cohesion and dilatancy constraint to the peak strength of hydrate-bearing sediments. The postpeak strength reduction is more evident and brittle in specimens with higher hydrate saturation and under lower stress. Significant strength reduction after shear failure is expected in silty sediments with high hydrate saturation Sh ≥ 0.65. Hydrate contribution to the residual strength is mainly by increasing cohesion at low hydrate saturation and friction at high hydrate saturation. Stress state and hydrate saturation are dominating both the stiffness and the strength of hydrate-bearing sediments; thus, a wave velocity-based peak strength prediction model is proposed and validated, which allows for precise estimation of the shear strength of hydrate-bearing sediments through acoustic logging data. This method is advantageous to geomechanical simulators, particularly when the experimental strength data of natural samples are not available.

Humic acids contribution to sedimentary organic matter on a shallow continental shelf (northern Adriatic Sea)

NASA Astrophysics Data System (ADS)

Giani, M.; Rampazzo, F.; Berto, D.

2010-12-01

The shallow northern Adriatic Sea receives large river runoff, predominantly from the Po River, which is the main allochthonous source of nutrients and organic matter. The origin and quality of organic matter deposited in the sediments can influence the degradation processes and oxygen consumption in the bottom waters as well as the fate of many pollutants. Therefore the humic acids (HA) were quantified in surface and sub-surface sediments collected in an area of the north-western Adriatic platform south of Po River. HA showed to have a relevant contribution to sedimentary organic matter. HA content in sediments were positively correlated with the organic carbon concentration and negatively with redox potential and pH, particularly in sub-surface reduced sediments, suggesting their important role in the diagenetic processes taking place in anoxic conditions. Elemental composition of HA extracted from surface and sub-surface sediments showed a wide range of variation of the C org/N ratios which could be due to a mixed (terrestrial and marine) origin and/or an elevated bacteria degradation of nitrogen during diagenesis processes in sediments. The spectroscopic ratios A 2/A 4 and A 4/A 6 of HA confirmed a mixed origin with a high degree of condensation of the HA extracted from sediments.

Geochemical Impacts of Leaking CO2 from Subsurface Storage Reservoirs on the Fate of Metal Contaminants in an Overlaying Groundwater Aquifer

NASA Astrophysics Data System (ADS)

Shao, H.; Qafoku, N. P.; Lawter, A.; Bowden, M. E.; Brown, C. F.

2014-12-01

The leakage of CO2 and the concomitant upward transport of brine solutions and contaminants from deep storage reservoirs to overlaying groundwater aquifers is considered one of the major risks associated with geologic carbon sequestration (GCS). A systematic understanding of how such leakage would impact the geochemistry of potable aquifers is crucial to the maintenance of environmental quality and the widespread acceptance of GCS. A series of batch and column experiments studies were conducted to understand the fate (mobilization and immobilization) of trace metals, such as Cd and As in the groundwater aquifer after the intrusion of CO2 gas and CO2-saturated fluids containing leached metals from deep subsurface storage reservoirs. Sediments from the High Plains aquifer in Kansas, United States, were used in this investigation, which is part of the National Risk Assessment Partnership Program sponsored by the US DOE. This aquifer was selected to be representative of consolidated sand and gravel/sandstone aquifers overlying potential CO2 sequestration repositories within the continental US. The experiments were conducted at room temperature and atmospheric pressure. The results demonstrated that Cd and As that intrude into groundwater aquifers with the leaking CO2 at initial concentrations of 40 and 114 mg/L, respectively, will be adsorbed on the sediments, in spite of the acidic pH (between 5 and 6) due to CO2 dissolution in the groundwater. Cd concentrations were well below its MCL in both the aqueous solution of the batch study and the effluent of the column study, even for one of the sediment samples which had undetectable amount of carbonate minerals to buffer the pH. Arsenic concentrations were also significantly lower than that in the influent, suggesting that natural sediments have the capacity to mitigate the adverse effects of the CO2 leakage. However, the mitigation capacity of sediments is influenced by its geochemical properties. When there are anions such as phosphate in the sediment, competitive adsorption may occur and result in higher concentrations of toxic metals in the aqueous phase. Results from these investigations will provide useful information to support site selection, risk assessment, and public education efforts associated with geological CO2 storage and sequestration.

Integrated surface-subsurface model to investigate the role of groundwater in headwater catchment runoff generation: A minimalist approach to parameterisation

NASA Astrophysics Data System (ADS)

Ala-aho, Pertti; Soulsby, Chris; Wang, Hailong; Tetzlaff, Doerthe

2017-04-01

Understanding the role of groundwater for runoff generation in headwater catchments is a challenge in hydrology, particularly so in data-scarce areas. Fully-integrated surface-subsurface modelling has shown potential in increasing process understanding for runoff generation, but high data requirements and difficulties in model calibration are typically assumed to preclude their use in catchment-scale studies. We used a fully integrated surface-subsurface hydrological simulator to enhance groundwater-related process understanding in a headwater catchment with a rich background in empirical data. To set up the model we used minimal data that could be reasonably expected to exist for any experimental catchment. A novel aspect of our approach was in using simplified model parameterisation and including parameters from all model domains (surface, subsurface, evapotranspiration) in automated model calibration. Calibration aimed not only to improve model fit, but also to test the information content of the observations (streamflow, remotely sensed evapotranspiration, median groundwater level) used in calibration objective functions. We identified sensitive parameters in all model domains (subsurface, surface, evapotranspiration), demonstrating that model calibration should be inclusive of parameters from these different model domains. Incorporating groundwater data in calibration objectives improved the model fit for groundwater levels, but simulations did not reproduce well the remotely sensed evapotranspiration time series even after calibration. Spatially explicit model output improved our understanding of how groundwater functions in maintaining streamflow generation primarily via saturation excess overland flow. Steady groundwater inputs created saturated conditions in the valley bottom riparian peatlands, leading to overland flow even during dry periods. Groundwater on the hillslopes was more dynamic in its response to rainfall, acting to expand the saturated area extent and thereby promoting saturation excess overland flow during rainstorms. Our work shows the potential of using integrated surface-subsurface modelling alongside with rigorous model calibration to better understand and visualise the role of groundwater in runoff generation even with limited datasets.

Three-Dimensional Subsurface Flow, Fate and Transport of Microbes and Chemicals (3DFATMIC) Model

EPA Pesticide Factsheets

This model simulates subsurface flow, fate and transport of contaminants that are undergoing chemical or biological transformations. The model is applicable to transient conditions in both saturated and unsaturated zones.

Two-Dimensional Subsurface Flow, Fate and Transport of Microbes and Chemicals (2DFATMIC) Model

EPA Pesticide Factsheets

This model simulates subsurface flow, fate, and transport of contaminants that are undergoing chemical or biological transformations. This model is applicable to transient conditions in both saturated and unsaturated zones.

Hydrogeophysical investigations at Hidden Dam, Raymond, California

USGS Publications Warehouse

Minsley, Burke J.; Burton, Bethany L.; Ikard, Scott; Powers, Michael H.

2011-01-01

Self-potential and direct current resistivity surveys are carried out at the Hidden Dam site in Raymond, California to assess present-day seepage patterns and better understand the hydrogeologic mechanisms that likely influence seepage. Numerical modeling is utilized in conjunction with the geophysical measurements to predict variably-saturated flow through typical two-dimensional dam cross-sections as a function of reservoir elevation. Several different flow scenarios are investigated based on the known hydrogeology, as well as information about typical subsurface structures gained from the resistivity survey. The flow models are also used to simulate the bulk electrical resistivity in the subsurface under varying saturation conditions, as well as the self-potential response using petrophysical relationships and electrokinetic coupling equations.The self-potential survey consists of 512 measurements on the downstream area of the dam, and corroborates known seepage areas on the northwest side of the dam. Two direct-current resistivity profiles, each approximately 2,500 ft (762 m) long, indicate a broad sediment channel under the northwest side of the dam, which may be a significant seepage pathway through the foundation. A focusing of seepage in low-topography areas downstream of the dam is confirmed from the numerical flow simulations, which is also consistent with past observations. Little evidence of seepage is identified from the self-potential data on the southeast side of the dam, also consistent with historical records, though one possible area of focused seepage is identified near the outlet works. Integration of the geophysical surveys, numerical modeling, and observation well data provides a framework for better understanding seepage at the site through a combined hydrogeophysical approach.

Characterization of the geology, geochemistry, hydrology and microbiology of the in-situ air stripping demonstration site at the Savannah River Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eddy, C.A.; Looney, B.B.; Dougherty, J.M.

1991-05-01

The Savannah River Site is the location of an Integrated Demonstration Project designed to evaluate innovative remediation technologies for environmental restoration at sites contaminated with volatile organic contaminants. This demonstration utilizes directionally drilled horizontal wells to deliver gases and extract contaminants from the subsurface. Phase I of the Integrated Demonstration focused on the application and development of in-situ air stripping technologies to remediate soils and sediments above and below the water table as well as groundwater contaminated with volatile organic contaminants. The objective of this report is to provide baseline information on the geology, geochemistry, hydrology, and microbiology of themore » demonstration site prior to the test. The distribution of contaminants in soils and sediments in the saturated zone and groundwater is emphasized. These data will be combined with data collected after the demonstration in order to evaluate the effectiveness of in-situ air stripping. New technologies for environmental characterization that were evaluated include depth discrete groundwater sampling (HydroPunch) and three-dimensional modeling of contaminant data.« less

Correlation of Geophysical and Geotechnical Methods for Sediment Mapping in Sungai Batu, Kedah

NASA Astrophysics Data System (ADS)

Zakaria, M. T.; Taib, A.; Saidin, M. M.; Saad, R.; Muztaza, N. M.; Masnan, S. S. K.

2018-04-01

Exploration geophysics is widely used to map the subsurface characteristics of a region, to understand the underlying rock structures and spatial distribution of rock units. 2-D resistivity and seismic refraction methods were conducted in Sungai Batu locality with objective to identify and map the sediment deposit with correlation of borehole record. 2-D resistivity data was acquire using ABEM SAS4000 system with Pole-dipole array and 2.5 m minimum electrode spacing while for seismic refraction ABEM MK8 seismograph was used to record the seismic data and 5 kg sledgehammer used as a seismic source with geophones interval of 5 m spacing. The inversion model of 2-D resistivity result shows that, the resistivity values <100 Ωm was interpreted as saturated zone with while high resistivity values >500 Ωm as the hard layer for this study area. The seismic result indicates that the velocity values <2000 m/s represent as the highly-weathered soil consists of clay and sand while high velocity values >3600 m/s interpreted as the hard layer in this locality.

Hillslope-scale experiment demonstrates role of convergence during two-step saturation

USGS Publications Warehouse

Gevaert, A. I.; Teuling, A. J.; Uijlenhoet, R.; DeLong, Stephen B.; Huxman, T. E.; Pangle, L. A.; Breshears, David D.; Chorover, J.; Pelletier, John D.; Saleska, S. R.; Zeng, X.; Troch, Peter A.

2014-01-01

Subsurface flow and storage dynamics at hillslope scale are difficult to ascertain, often in part due to a lack of sufficient high-resolution measurements and an incomplete understanding of boundary conditions, soil properties, and other environmental aspects. A continuous and extreme rainfall experiment on an artificial hillslope at Biosphere 2's Landscape Evolution Observatory (LEO) resulted in saturation excess overland flow and gully erosion in the convergent hillslope area. An array of 496 soil moisture sensors revealed a two-step saturation process. First, the downward movement of the wetting front brought soils to a relatively constant but still unsaturated moisture content. Second, soils were brought to saturated conditions from below in response to rising water tables. Convergent areas responded faster than upslope areas, due to contributions from lateral subsurface flow driven by the topography of the bottom boundary, which is comparable to impermeable bedrock in natural environments. This led to the formation of a groundwater ridge in the convergent area, triggering saturation excess runoff generation. This unique experiment demonstrates, at very high spatial and temporal resolution, the role of convergence on subsurface storage and flow dynamics. The results bring into question the representation of saturation excess overland flow in conceptual rainfall-runoff models and land-surface models, since flow is gravity-driven in many of these models and upper layers cannot become saturated from below. The results also provide a baseline to study the role of the co-evolution of ecological and hydrological processes in determining landscape water dynamics during future experiments in LEO.

Sampling surface and subsurface particle-size distributions in wadable gravel-and cobble-bed streams for analyses in sediment transport, hydraulics, and streambed monitoring

Treesearch

Kristin Bunte; Steven R. Abt

2001-01-01

This document provides guidance for sampling surface and subsurface sediment from wadable gravel-and cobble-bed streams. After a short introduction to streams types and classifications in gravel-bed rivers, the document explains the field and laboratory measurement of particle sizes and the statistical analysis of particle-size distributions. Analysis of particle...

Watershed scale fungal community characterization along a pH gradient in a subsurface environment co-contaminated with uranium and nitrate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jasrotia, Puja; Green, Stefan; Canion, Andy

2014-01-01

The objective of this study was to characterize fungal communities in a subsurface environment co-contaminated with uranium and nitrate at the watershed scale, and to determine the potential contribution of fungi to contaminant transformation (nitrate attenuation). The abundance, distribution and diversity of fungi in subsurface groundwater samples were determined using quantitative and semi-quantitative molecular techniques, including quantitative PCR of eukaryotic SSU rRNA genes and pyrosequencing of fungal internal transcribed spacer (ITS) regions. Potential bacterial and fungal denitrification was assessed in sediment-groundwater slurries amended with antimicrobial compounds and in fungal pure cultures isolated from subsurface. Our results demonstrate that subsurface fungalmore » communities are dominated by members of the phylum Ascomycota, and a pronounced shift in fungal community composition occurs across the groundwater pH gradient at the field site, with lower diversity observed under acidic (pH < 4.5) conditions. Fungal isolates recovered from subsurface sediments were shown to reduce nitrate to nitrous oxide, including cultures of the genus Coniochaeta that were detected in abundance in pyrosequence libraries of site groundwater samples. Denitrifying fungal isolates recovered from the site were classified, and found to be distributed broadly within the phylum Ascomycota, and within a single genus within the Basidiomycota. Potential denitrification rate assays with sediment-groundwater slurries showed the potential for subsurface fungi to reduce nitrate to nitrous oxide under in situ acidic pH conditions.« less

Watershed-Scale Fungal Community Characterization along a pH Gradient in a Subsurface Environment Cocontaminated with Uranium and Nitrate

PubMed Central

Jasrotia, Puja; Green, Stefan J.; Canion, Andy; Overholt, Will A.; Prakash, Om; Wafula, Denis; Hubbard, Daniela; Watson, David B.; Schadt, Christopher W.; Brooks, Scott C.

2014-01-01

The objective of this study was to characterize fungal communities in a subsurface environment cocontaminated with uranium and nitrate at the watershed scale and to determine the potential contribution of fungi to contaminant transformation (nitrate attenuation). The abundance, distribution, and diversity of fungi in subsurface groundwater samples were determined using quantitative and semiquantitative molecular techniques, including quantitative PCR of eukaryotic small-subunit rRNA genes and pyrosequencing of fungal internal transcribed spacer (ITS) regions. Potential bacterial and fungal denitrification was assessed in sediment-groundwater slurries amended with antimicrobial compounds and in fungal pure cultures isolated from the subsurface. Our results demonstrate that subsurface fungal communities are dominated by members of the phylum Ascomycota, and a pronounced shift in fungal community composition occurs across the groundwater pH gradient at the field site, with lower diversity observed under acidic (pH <4.5) conditions. Fungal isolates recovered from subsurface sediments, including cultures of the genus Coniochaeta, which were detected in abundance in pyrosequence libraries of site groundwater samples, were shown to reduce nitrate to nitrous oxide. Denitrifying fungal isolates recovered from the site were classified and found to be distributed broadly within the phylum Ascomycota and within a single genus of the Basidiomycota. Potential denitrification rate assays with sediment-groundwater slurries showed the potential for subsurface fungi to reduce nitrate to nitrous oxide under in situ acidic pH conditions. PMID:24389927

An effective medium inversion algorithm for gas hydrate quantification and its application to laboratory and borehole measurements of gas hydrate-bearing sediments

NASA Astrophysics Data System (ADS)

Chand, Shyam; Minshull, Tim A.; Priest, Jeff A.; Best, Angus I.; Clayton, Christopher R. I.; Waite, William F.

2006-08-01

The presence of gas hydrate in marine sediments alters their physical properties. In some circumstances, gas hydrate may cement sediment grains together and dramatically increase the seismic P- and S-wave velocities of the composite medium. Hydrate may also form a load-bearing structure within the sediment microstructure, but with different seismic wave attenuation characteristics, changing the attenuation behaviour of the composite. Here we introduce an inversion algorithm based on effective medium modelling to infer hydrate saturations from velocity and attenuation measurements on hydrate-bearing sediments. The velocity increase is modelled as extra binding developed by gas hydrate that strengthens the sediment microstructure. The attenuation increase is modelled through a difference in fluid flow properties caused by different permeabilities in the sediment and hydrate microstructures. We relate velocity and attenuation increases in hydrate-bearing sediments to their hydrate content, using an effective medium inversion algorithm based on the self-consistent approximation (SCA), differential effective medium (DEM) theory, and Biot and squirt flow mechanisms of fluid flow. The inversion algorithm is able to convert observations in compressional and shear wave velocities and attenuations to hydrate saturation in the sediment pore space. We applied our algorithm to a data set from the Mallik 2L-38 well, Mackenzie delta, Canada, and to data from laboratory measurements on gas-rich and water-saturated sand samples. Predictions using our algorithm match the borehole data and water-saturated laboratory data if the proportion of hydrate contributing to the load-bearing structure increases with hydrate saturation. The predictions match the gas-rich laboratory data if that proportion decreases with hydrate saturation. We attribute this difference to differences in hydrate formation mechanisms between the two environments.

An effective medium inversion algorithm for gas hydrate quantification and its application to laboratory and borehole measurements of gas hydrate-bearing sediments

USGS Publications Warehouse

Chand, S.; Minshull, T.A.; Priest, J.A.; Best, A.I.; Clayton, C.R.I.; Waite, W.F.

2006-01-01

The presence of gas hydrate in marine sediments alters their physical properties. In some circumstances, gas hydrate may cement sediment grains together and dramatically increase the seismic P- and S-wave velocities of the composite medium. Hydrate may also form a load-bearing structure within the sediment microstructure, but with different seismic wave attenuation characteristics, changing the attenuation behaviour of the composite. Here we introduce an inversion algorithm based on effective medium modelling to infer hydrate saturations from velocity and attenuation measurements on hydrate-bearing sediments. The velocity increase is modelled as extra binding developed by gas hydrate that strengthens the sediment microstructure. The attenuation increase is modelled through a difference in fluid flow properties caused by different permeabilities in the sediment and hydrate microstructures. We relate velocity and attenuation increases in hydrate-bearing sediments to their hydrate content, using an effective medium inversion algorithm based on the self-consistent approximation (SCA), differential effective medium (DEM) theory, and Biot and squirt flow mechanisms of fluid flow. The inversion algorithm is able to convert observations in compressional and shear wave velocities and attenuations to hydrate saturation in the sediment pore space. We applied our algorithm to a data set from the Mallik 2L–38 well, Mackenzie delta, Canada, and to data from laboratory measurements on gas-rich and water-saturated sand samples. Predictions using our algorithm match the borehole data and water-saturated laboratory data if the proportion of hydrate contributing to the load-bearing structure increases with hydrate saturation. The predictions match the gas-rich laboratory data if that proportion decreases with hydrate saturation. We attribute this difference to differences in hydrate formation mechanisms between the two environments.

MICROSCALE METABOLIC, REDOX AND ABIOTIC REACTIONS IN HANFORD 300 AREA SUBSURFACE SEDIMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beyenal, Haluk; McLEan, Jeff; Majors, Paul

2013-11-14

The Hanford 300 Area is a unique site due to periodic hydrologic influence of river water resulting in changes in groundwater elevation and flow direction. This area is also highly subject to uranium remobilization, the source of which is currently believed to be the region at the base of the vadose zone that is subject to period saturation due to the changes in the water levels in the Columbia River. We found that microbial processes and redox and abiotic reactions which operate at the microscale were critical to understanding factors controlling the macroscopic fate and transport of contaminants in themore » subsurface. The combined laboratory and field research showed how microscale conditions control uranium mobility and how biotic, abiotic and redox reactions relate to each other. Our findings extended the current knowledge to examine U(VI) reduction and immobilization using natural 300 Area communities as well as selected model organisms on redox-sensitive and redox-insensitive minerals. Using innovative techniques developed specifically to probe biogeochemical processes at the microscale, our research expanded our current understanding of the roles played by mineral surfaces, bacterial competition, and local biotic, abiotic and redox reaction rates on the reduction and immobilization of uranium.« less

Electrical resistivity surveys in Prospect Gulch, San Juan County, Colorado

USGS Publications Warehouse

McDougal, Robert R.

2006-01-01

Prospect Gulch is a major source of naturally occurring and mining related metals to Cement Creek, a tributary of the upper Animas River in southwestern Colorado. Efforts to improve water quality in the watershed have focused on Prospect Gulch because many of its abandoned mines and are located on federal lands. Information on sources and pathways of metals, and related ground-water flow, will be useful to help prioritize and develop remediation strategies. It has been shown that the occurrence of sulfate, aluminum, iron, zinc and other metals associated with historical mining and the natural weathering of pyritic rock is substantial. In this study, direct current resistivity surveys were conducted to determine the subsurface resistivity distribution and to identify faults and fractures that may act as ground-water conduits or barriers to flow. Five lines of resistivity data were collected in the vicinity of Prospect Gulch, and cross-section profiles were constructed from the field data using a two-dimensional inversion algorithm. The conductive anomalies in the profiles are most likely caused by wet or saturated rocks and sediments, clay rich deposits, or high TDS ground water. Resistive anomalies are likely bedrock, dry surficial and sub-surface deposits, or deposits of ferricrete.

Groundwater modelling in conceptual hydrological models - introducing space

NASA Astrophysics Data System (ADS)

Boje, Søren; Skaugen, Thomas; Møen, Knut; Myrabø, Steinar

2017-04-01

The tiny Sæternbekken Minifelt (Muren) catchment (7500 m2) in Bærumsmarka, Norway, was during the 1990s, densely instrumented with more than a 100 observation points for measuring groundwater levels. The aim was to investigate the link between shallow groundwater dynamics and runoff. The DDD (Distance Distribution Dynamics) model is a newly developed rainfall-runoff model used operationally by the Norwegian Flood-Forecasting service at NVE. The model estimates the capacity of the subsurface reservoir at different levels of saturation and predicts overland flow. The subsurface in the DDD model has a 2-D representation that calculates the saturated and unsaturated soil moisture along a hillslope representing the entire catchment in question. The groundwater observations from more than two decades ago are used to verify assumptions of the subsurface reservoir in the DDD model and to validate its spatial representation of the subsurface reservoir. The Muren catchment will, during 2017, be re-instrumented in order to continue the work to bridge the gap between conceptual hydrological models, with typically single value or 0-dimension representation of the subsurface, and models with more realistic 2- or 3-dimension representation of the subsurface.

Analysis of a PAH-degrading bacterial population in subsurface sediments on the Mid-Atlantic Ridge

NASA Astrophysics Data System (ADS)

Shao, Zongze; Cui, Zhisong; Dong, Chunming; Lai, Qiliang; Chen, Liang

2010-05-01

Little is known about the types and concentrations of polycyclic aromatic hydrocarbons (PAHs) existing in the deep-sea subsurface environment, which is believed to be cold, oligothrophic and of high static pressure. PAHs in the upper layers of the water column are unavoidably subjected to degradation while they are deposited to the sea floor and become embedded in the deep-sea sediment. In this report, a high concentration of PAHs was discovered in the sediment 2.7 m beneath the bottom surface at a water depth of 3962 m on the Mid-Atlantic Ridge (MAR). The total concentration of PAHs was 445 ng (g dry wt sediment) -1. Among the seven detected PAHs, the concentrations of phenanthrene (222 ng g -1) and fluorene (79 ng g -1) were relatively high. In addition, PAH-degrading bacteria were found within the sediments. As in a previously detected site on the MAR, in the PAH-enriched region of this site, a bacterium of the genus Cycloclasticus was found to be the predominant isolate detected by PCR-DGGE analysis. In addition, bacteria of the Halomonas, Marinobacter, Alcanivorax, Thalassospira and Maricaulis genera, were also included in the PAH-degrading community. In summary, a high concentration of PAHs was detected in the subsurface of the deep-sea sediment, and once again, the Cycloclasticus bacterium was confirmed to be a ubiquitous marine PAH degrader even in the subsurface marine environment. Considering the abundance of PAHs therein, biodegradation is thus thought to be inactive, probably because of the low temperature, limited oxygen and/or limited nutrients.

Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria

PubMed Central

Russell, Joseph A.; León-Zayas, Rosa; Wrighton, Kelly; Biddle, Jennifer F.

2016-01-01

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic water-column west of the Mid-Atlantic Ridge at 22°N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sediment column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. The cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface. PMID:27242705

Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria.

PubMed

Russell, Joseph A; León-Zayas, Rosa; Wrighton, Kelly; Biddle, Jennifer F

2016-01-01

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic water-column west of the Mid-Atlantic Ridge at 22°N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sediment column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. The cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.

Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea

PubMed Central

Graw, Michael F.; D'Angelo, Grace; Borchers, Matthew; Thurber, Andrew R.; Johnson, Joel E.; Zhang, Chuanlun; Liu, Haodong; Colwell, Frederick S.

2018-01-01

The deep marine subsurface is a heterogeneous environment in which the assembly of microbial communities is thought to be controlled by a combination of organic matter deposition, electron acceptor availability, and sedimentology. However, the relative importance of these factors in structuring microbial communities in marine sediments remains unclear. The South China Sea (SCS) experiences significant variability in sedimentation across the basin and features discrete changes in sedimentology as a result of episodic deposition of turbidites and volcanic ashes within lithogenic clays and siliceous or calcareous ooze deposits throughout the basin's history. Deep subsurface microbial communities were recently sampled by the International Ocean Discovery Program (IODP) at three locations in the SCS with sedimentation rates of 5, 12, and 20 cm per thousand years. Here, we used Illumina sequencing of the 16S ribosomal RNA gene to characterize deep subsurface microbial communities from distinct sediment types at these sites. Communities across all sites were dominated by several poorly characterized taxa implicated in organic matter degradation, including Atribacteria, Dehalococcoidia, and Aerophobetes. Sulfate-reducing bacteria comprised only 4% of the community across sulfate-bearing sediments from multiple cores and did not change in abundance in sediments from the methanogenic zone at the site with the lowest sedimentation rate. Microbial communities were significantly structured by sediment age and the availability of sulfate as an electron acceptor in pore waters. However, microbial communities demonstrated no partitioning based on the sediment type they inhabited. These results indicate that microbial communities in the SCS are structured by the availability of electron donors and acceptors rather than sedimentological characteristics. PMID:29696012

Transport of poly(acrylic acid) coated 2-line ferrihydrite nanoparticles in saturated aquifer sediments for environmental remediation

NASA Astrophysics Data System (ADS)

Xiang, Aishuang; Zhou, Sheng; Koel, Bruce E.; Jaffé, Peter R.

2014-04-01

Groundwater remediation using iron oxide and zero-valent iron nanoparticles (NPs) can be effective, but is limited in many applications due to the NP strong retention in groundwater-saturated porous media after injection, the passivation of the porous surface, and the high cost of nanomaterials versus macro scale iron. In this study, we investigated transport of bare and polymer-coated 2-line ferrihydrite NPs (30-300 nm) in saturated aquifer sediments. The influence of poly(acrylic acid) (PAA) polymer coatings was studied on the colloidal stability and transport in sediments packed column tests simulating groundwater flow in saturated sediments. In addition, the influence of calcium cations was investigated by transport measurements using sediments with calcium concentrations in the aqueous phase ranging from 0.5 (typical for most sediments) to 2 mM. Measurements were also made of zeta potential, hydrodynamic diameter, polymer adsorption and desorption properties, and bio-availability of PAA-coated NPs. We found that NP transport through the saturated aquifer sediments was improved by PAA coating and that the transport properties could be tuned by adjusting the polymer concentration. We further discovered that PAA coatings enhanced NP transport, compared to bare NPs, in all calcium-containing experiments tested, however, the presence of calcium always exhibited a negative effect on NP transport. In tests of bioavailability, the iron reduction rate of the coated and bare NPs by Geobacter sulfurreducens was the same, which shows that the PAA coating does not significantly reduce NP Fe(III) bioavailability. Our results demonstrate that much improved transport of iron oxide NP can be achieved in saturated aquifer sediments by introducing negatively charged polyelectrolytes and optimizing polymer concentrations, and furthermore, these coated NPs retain their bioavailability that is needed for applications in bio-environmental remediation.

Mobility of arsenic in the sub-surface environment: An integrated hydrogeochemical study and sorption model of the sandy aquifer materials

NASA Astrophysics Data System (ADS)

Nath, Bibhash; Chakraborty, Sudipta; Burnol, André; Stüben, Doris; Chatterjee, Debashis; Charlet, Laurent

2009-01-01

SummaryGroundwater and aquifer materials have been characterized geochemically at a field site located in the Chakdaha municipality of West Bengal, India. Sorption experiments were also carried out on a sandy aquifer material to understand the mobility of arsenic (As) in the sub-surface environments. The result shows that the areas associated with high groundwater As (mean: 1.8 μM) is typically associated with low Eh (mean: -129 mV), and high Fe (mean: 0.11 mM), where Fe 2+/Fe(OH) 3 couple is controlling groundwater redox potential. Analysis of the aquifer material total concentrations showed the dominance of As (range: 8.9-22 mg kg -1), Fe (range: 3.0-9.7% as Fe 2O 3) and Mn (range: 0.05-0.18% as MnO) in the silt-/clay-rich sediments; whereas fine-/medium-sand rich sediment contains considerably lower amount of As (<8.1 mg kg -1), Fe (range: 1.6-3.9% as Fe 2O 3) and Mn (range: 0.02-0.08% as MnO). The acid extractable As do not correlate with ascorbate extractable Fe-oxyhydroxide, however Fe-oxyhydroxide is generally high in the sediments from low groundwater As areas. Chemical speciation computations indicated Fe(II), Ca(II), Mg(II) and Mn(II) to be at equilibrium (with respect to calcite, dolomite and rhodochrosite) or slightly over-saturated (with respect to siderite). These carbonate minerals may therefore participate to the As immobilization. The measured total organic carbon (˜1%) and groundwater temperature (26-32 °C) coupled with sorption studies strongly favors microbially mediated Fe(III)-oxyhydroxide reduction as the dominant mechanism for the release of As in the groundwater. Oscillations of As, Mn and Fe concentrations with depth reflected pCO 2 oscillations consecutive to microbial respiration intensity.

Integrating real-time subsurface hydrologic monitoring with empirical rainfall thresholds to improve landslide early warning

USGS Publications Warehouse

Mirus, Benjamin B.; Becker, Rachel E.; Baum, Rex L.; Smith, Joel B.

2018-01-01

Early warning for rainfall-induced shallow landsliding can help reduce fatalities and economic losses. Although these commonly occurring landslides are typically triggered by subsurface hydrological processes, most early warning criteria rely exclusively on empirical rainfall thresholds and other indirect proxies for subsurface wetness. We explore the utility of explicitly accounting for antecedent wetness by integrating real-time subsurface hydrologic measurements into landslide early warning criteria. Our efforts build on previous progress with rainfall thresholds, monitoring, and numerical modeling along the landslide-prone railway corridor between Everett and Seattle, Washington, USA. We propose a modification to a previously established recent versus antecedent (RA) cumulative rainfall thresholds by replacing the antecedent 15-day rainfall component with an average saturation observed over the same timeframe. We calculate this antecedent saturation with real-time telemetered measurements from five volumetric water content probes installed in the shallow subsurface within a steep vegetated hillslope. Our hybrid rainfall versus saturation (RS) threshold still relies on the same recent 3-day rainfall component as the existing RA thresholds, to facilitate ready integration with quantitative precipitation forecasts. During the 2015–2017 monitoring period, this RS hybrid approach has an increase of true positives and a decrease of false positives and false negatives relative to the previous RA rainfall-only thresholds. We also demonstrate that alternative hybrid threshold formats could be even more accurate, which suggests that further development and testing during future landslide seasons is needed. The positive results confirm that accounting for antecedent wetness conditions with direct subsurface hydrologic measurements can improve thresholds for alert systems and early warning of rainfall-induced shallow landsliding.

Characterising the dynamics of surface water-groundwater interactions in intermittent and ephemeral streams using streambed thermal signatures

NASA Astrophysics Data System (ADS)

Rau, Gabriel C.; Halloran, Landon J. S.; Cuthbert, Mark O.; Andersen, Martin S.; Acworth, R. Ian; Tellam, John H.

2017-09-01

Ephemeral and intermittent flow in dryland stream channels infiltrates into sediments, replenishes groundwater resources and underpins riparian ecosystems. However, the spatiotemporal complexity of the transitory flow processes that occur beneath such stream channels are poorly observed and understood. We develop a new approach to characterise the dynamics of surface water-groundwater interactions in dryland streams using pairs of temperature records measured at different depths within the streambed. The approach exploits the fact that the downward propagation of the diel temperature fluctuation from the surface depends on the sediment thermal diffusivity. This is controlled by time-varying fractions of air and water contained in streambed sediments causing a contrast in thermal properties. We demonstrate the usefulness of this method with multi-level temperature and pressure records of a flow event acquired using 12 streambed arrays deployed along a ∼ 12 km dryland channel section. Thermal signatures clearly indicate the presence of water and characterise the vertical flow component as well as the occurrence of horizontal hyporheic flow. We jointly interpret thermal signatures as well as surface and groundwater levels to distinguish four different hydrological regimes: [A] dry channel, [B] surface run-off, [C] pool-riffle sequence, and [D] isolated pools. The occurrence and duration of the regimes depends on the rate at which the infiltrated water redistributes in the subsurface which, in turn, is controlled by the hydraulic properties of the variably saturated sediment. Our results have significant implications for understanding how transitory flows recharge alluvial sediments, influence water quality and underpin dryland ecosystems.

MECHANISMS OF MICROBIAL MOVEMENT IN SUBSURFACE MATERIALS

EPA Science Inventory

The biological factors important in the penetration of Escherichia coli through anaerobic, nutrient-saturated, Ottawa sand-packed cores were studied under static conditions. In cores saturated with galactose-peptone medium, motile strains of E. coli penetrated four times faster t...

In situ expression of nifD in Geobacteraceae in subsurface sediments

USGS Publications Warehouse

Holmes, Dawn E.; Nevin, Kelly P.; Lovely, Derek R.

2004-01-01

In order to determine whether the metabolic state of Geobacteraceae involved in bioremediation of subsurface sediments might be inferred from levels of mRNA for key genes, in situ expression of nifD, a highly conserved gene involved in nitrogen fixation, was investigated. When Geobacter sulfurreducens was grown without a source of fixed nitrogen in chemostats with acetate provided as the limiting electron donor and Fe(III) as the electron acceptor, levels of nifD transcripts were 4 to 5 orders of magnitude higher than in chemostat cultures provided with ammonium. In contrast, the number of transcripts of recA and the 16S rRNA gene were slightly lower in the absence of ammonium. The addition of acetate to organic- and nitrogen-poor subsurface sediments stimulated the growth of Geobacteraceae and Fe(III) reduction, as well as the expression of nifD in Geobacteraceae. Levels of nifD transcripts in Geobacteraceae decreased more than 100-fold within 2 days after the addition of 100 μM ammonium, while levels of recA and total bacterial 16S rRNA in Geobacteraceae remained relatively constant. Ammonium amendments had no effect on rates of Fe(III) reduction in acetate-amended sediments or toluene degradation in petroleum-contaminated sediments, suggesting that other factors, such as the rate that Geobacteraceae could access Fe(III) oxides, limited Fe(III) reduction. These results demonstrate that it is possible to monitor one aspect of the in situ metabolic state of Geobacteraceae species in subsurface sediments via analysis of mRNA levels, which is the first step toward a more global analysis of in situ gene expression related to nutrient status and stress response during bioremediation by Geobacteraceae.

The Importance of Subsurface Production for Carbon Export - Evidence from Past Oceans

NASA Astrophysics Data System (ADS)

Kemp, A. E. S.

2016-02-01

The maxim of the geological concept of uniformitarianism is "the present is the key to the past", but in the context of our temporally and spatially minimal observational record of modern ocean biogeochemical processes, ancient ocean sediments may provide critical evidence of the key species involved in carbon flux. Specifically, laminated marine sediments that preserve the seasonal flux cycle represent "palaeo-sediment traps" that vastly expand our knowledge of the operations of the marine biological carbon pump. Several key subsurface-dwelling diatom taxa, hitherto thought to be biogeochemically insignificant, are dominant components of ancient marine sediments. For example, the sapropels and equivalent horizons that have accumulated in the Mediterranean over the past 5 million years, contain abundant rhizosolenid and hemiaulid diatoms. These deposits contain the highest concentrations of organic carbon and there is extensive evidence that this was produced by subsurface production in a deep chlorophyll maximum. The highly stratified conditions that led to this subsurface production and carbon flux are in contrast to prevailing views that have held upwelling systems as those with the highest potential for export in the global ocean. Similarly, studies of ancient "greenhouse" periods such as the Cretaceous, with highly stratified oceans and which are potential analogues for future climate change, show evidence for extensive subsurface production. Together with emerging evidence from stratified regions of the modern ocean, such as the subtropical gyres, insights from these ancient oceans suggest that a reappraisal is required of current views on key phytoplankton producers and their role the operation of the marine biological carbon pump.

Estimating growth rates of uncultivated clades of archaea and bacteria in marine sediments

NASA Astrophysics Data System (ADS)

Lloyd, K. G.

2016-12-01

The vast majority of microbes present in marine sediments have never been cultivated in laboratory conditions. It is therefore difficult to estimate the growth rates of these organisms in situ. Quantitative PCR (qPCR) and 16S rRNA gene libraries from sediments below 10 cm show very little change in abundance of these organisms with depth or with redox conditions. Therefore, we hypothesized that uncultivated clades of bacteria and archaea that are ubiquitous in marine sediments, actually grow in the upper 10 cm of marine sediments. We collected sediment cores from the White Oak River estuary, sectioned them in 1 cm intervals, and examined the changes in abundance of uncultivated microbes with depth using 16S rRNA gene libraries and qPCR. We found that some of the key clades associated with the deep subsurface microbiome, such as Bathyarchaeota and MBG-D, increase in abundance with depth, demonstrating extremely slow growth in these shallow subsurface sediments.

Elevated gas hydrate saturation within silt and silty clay sediments in the Shenhu area, South China Sea

USGS Publications Warehouse

Wang, Xiujuan; Hutchinson, Deborah R.; Wu, Shiguo; Yang, Shengxiong; Guo, Yiqun

2011-01-01

Gas hydrate saturations were estimated using five different methods in silt and silty clay foraminiferous sediments from drill hole SH2 in the South China Sea. Gas hydrate saturations derived from observed pore water chloride values in core samples range from 10 to 45% of the pore space at 190–221 m below seafloor (mbsf). Gas hydrate saturations estimated from resistivity (Rt) using wireline logging results are similar and range from 10 to 40.5% in the pore space. Gas hydrate saturations were also estimated by P wave velocity obtained during wireline logging by using a simplified three-phase equation (STPE) and effective medium theory (EMT) models. Gas hydrate saturations obtained from the STPE velocity model (41.0% maximum) are slightly higher than those calculated with the EMT velocity model (38.5% maximum). Methane analysis from a 69 cm long depressurized core from the hydrate-bearing sediment zone indicates that gas hydrate saturation is about 27.08% of the pore space at 197.5 mbsf. Results from the five methods show similar values and nearly identical trends in gas hydrate saturations above the base of the gas hydrate stability zone at depths of 190 to 221 mbsf. Gas hydrate occurs within units of clayey slit and silt containing abundant calcareous nannofossils and foraminifer, which increase the porosities of the fine-grained sediments and provide space for enhanced gas hydrate formation. In addition, gas chimneys, faults, and fractures identified from three-dimensional (3-D) and high-resolution two-dimensional (2-D) seismic data provide pathways for fluids migrating into the gas hydrate stability zone which transport methane for the formation of gas hydrate. Sedimentation and local canyon migration may contribute to higher gas hydrate saturations near the base of the stability zone.

Elastic velocity models for gas-hydrate-bearing sediments-a comparison

NASA Astrophysics Data System (ADS)

Chand, Shyam; Minshull, Tim A.; Gei, Davide; Carcione, José M.

2004-11-01

The presence of gas hydrate in oceanic sediments is mostly identified by bottom-simulating reflectors (BSRs), reflection events with reversed polarity following the trend of the seafloor. Attempts to quantify the amount of gas hydrate present in oceanic sediments have been based mainly on the presence or absence of a BSR and its relative amplitude. Recent studies have shown that a BSR is not a necessary criterion for the presence of gas hydrates, but rather its presence depends on the type of sediments and the in situ conditions. The influence of hydrate on the physical properties of sediments overlying the BSR is determined by the elastic properties of their constituents and on sediment microstructure. In this context several approaches have been developed to predict the physical properties of sediments, and thereby quantify the amount of gas/gas hydrate present from observed deviations of these properties from those predicted for sediments without gas hydrate. We tested four models: the empirical weighted equation (WE); the three-phase effective-medium theory (TPEM); the three-phase Biot theory (TPB) and the differential effective-medium theory (DEM). We compared these models for a range of variables (porosity and clay content) using standard values for physical parameters. The comparison shows that all the models predict sediment properties comparable to field values except for the WE model at lower porosities and the TPB model at higher porosities. The models differ in the variation of velocity with porosity and clay content. The variation of velocity with hydrate saturation is also different, although the range is similar. We have used these models to predict velocities for field data sets from sediment sections with and without gas hydrates. The first is from the Mallik 2L-38 well, Mackenzie Delta, Canada, and the second is from Ocean Drilling Program (ODP) Leg 164 on Blake Ridge. Both data sets have Vp and Vs information along with the composition and porosity of the matrix. Models are considered successful if predictions from both Vp and Vs match hydrate saturations inferred from other data. Three of the models predict consistent hydrate saturations of 60-80 per cent from both Vp and Vs from log and vertical seismic profiling data for the Mallik 2L-38 well data set, but the TPEM model predicts 20 per cent higher saturations, as does the DEM model with a clay-water starting medium. For the clay-rich sediments of Blake Ridge, the DEM, TPEM and WE models predict 10-20 per cent hydrate saturation from Vp data, comparable to that inferred from resistivity data. The hydrate saturation predicted by the TPB model from Vp is higher. Using Vs data, the DEM and TPEM models predict very low or zero hydrate saturation while the TPB and WE models predict hydrate saturation very much higher than those predicted from Vp data. Low hydrate saturations are observed to have little effect on Vs. The hydrate phase appears to be connected within the sediment microstructure even at low saturations.

Joint application of Geoelectrical Resistivity and Ground Penetrating Radar techniques for the study of hyper-saturated zones. Case study in Egypt

NASA Astrophysics Data System (ADS)

Mesbah, Hany S.; Morsy, Essam A.; Soliman, Mamdouh M.; Kabeel, Khamis

2017-06-01

This paper presents the results of the application of the Geoelectrical Resistivity Sounding (GRS) and Ground Penetrating Radar (GPR) for outlining and investigating of surface springing out (flow) of groundwater to the base of an service building site, and determining the reason(s) for the zone of maximum degree of saturation; in addition to provide stratigraphic information for this site. The studied economic building is constructed lower than the ground surface by about 7 m. A Vertical Electrical Sounding (VES) survey was performed at 12 points around the studied building in order to investigate the vertical and lateral extent of the subsurface sequence, three VES's were conducted at each side of the building at discrete distances. And a total of 9 GPR profiles with 100- and 200-MHz antennae were conducted, with the objective of evaluating the depth and the degree of saturation of the subsurface layers. The qualitative and quantitative interpretation of the acquired VES's showed easily the levels of saturations close to and around the studied building. From the interpretation of GPR profiles, it was possible to locate and determine the saturated layers. The radar signals are penetrated and enabled the identification of the subsurface reflectors. The results of GPR and VES showed a good agreement and the integrated interpretations were supported by local geology. Finally, the new constructed geoelectrical resistivity cross-sections (in contoured-form), are easily clarifying the direction of groundwater flow toward the studied building.

Explicit use of the Biot coefficient in predicting shear-wave velocity of water-saturated sediments

USGS Publications Warehouse

Lee, M.W.

2006-01-01

Predicting the shear-wave (S-wave) velocity is important in seismic modelling, amplitude analysis with offset, and other exploration and engineering applications. Under the low-frequency approximation, the classical Biot-Gassmann theory relates the Biot coefficient to the bulk modulus of water-saturated sediments. If the Biot coefficient under in situ conditions can be estimated, the shear modulus or the S-wave velocity can be calculated. The Biot coefficient derived from the compressional-wave (P-wave) velocity of water-saturated sediments often differs from and is less than that estimated from the S-wave velocity, owing to the interactions between the pore fluid and the grain contacts. By correcting the Biot coefficients derived from P-wave velocities of water-saturated sediments measured at various differential pressures, an accurate method of predicting S-wave velocities is proposed. Numerical results indicate that the predicted S-wave velocities for consolidated and unconsolidated sediments agreewell with measured velocities. ?? 2006 European Association of Geoscientists & Engineers.

Robust optode-based method for measuring in situ oxygen profiles in gravelly streambeds.

PubMed

Vieweg, Michael; Trauth, Nico; Fleckenstein, Jan H; Schmidt, Christian

2013-09-03

One of the key environmental conditions controlling biogeochemical reactions in aquatic sediments like streambeds is the distribution of dissolved oxygen. We present a novel approach for the in situ measurement of vertical oxygen profiles using a planar luminescence-based optical sensor. The instrument consists of a transparent acrylic tube with the oxygen-sensitive layer mounted on the outside. The luminescence is excited and detected by a moveable piston inside the acrylic tube. Since no moving parts are in contact with the streambed, the disturbance of the subsurface flow field is minimized. The precision of the distributed oxygen sensor (DOS) was assessed by a comparison with spot optodes. Although the precision of the DOS, expressed as standard deviation of calculated oxygen air saturation, is lower (0.2-6.2%) compared to spot optodes (<0.1-0.6%), variations of the oxygen content along the profile can be resolved. The uncertainty of the calculated oxygen is assessed with a Monte Carlo uncertainty assessment. The obtained vertical oxygen profiles of 40 cm in length reveal variations of the oxygen content reaching from 90% to 0% air saturation and are characterized by patches of low oxygen rather than a continuous decrease with depth.

MODELING THREE-DIMENSIONAL SUBSURFACE FLOW, FATE AND TRANSPORT OF MICROBES AND CHEMICALS (3DFATMIC)

EPA Science Inventory

A three-dimensional model simulating the subsurface flow, microbial growth and degradation, microbial-chemical reaction, and transport of microbes and chemicals has been developed. he model is designed to solve the coupled flow and transport equations. asically, the saturated-uns...

Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments.

PubMed

Ahmed, Bulbul; Cao, Bin; McLean, Jeffrey S; Ica, Tuba; Dohnalkova, Alice; Istanbullu, Ozlem; Paksoy, Akin; Fredrickson, Jim K; Beyenal, Haluk

2012-11-01

A facultative iron-reducing [Fe(III)-reducing] Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes [Fe(III)-nitrilotriacetic acid and Fe(III)-citrate] but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 μM) of either of the electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 μM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We also found that Paenibacillus sp. 300A could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ∼7:3 in PIPES [piperazine-N,N'-bis(2-ethanesulfonic acid)] and ∼1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments.

Fe(III) Reduction and U(VI) Immobilization by Paenibacillus sp. Strain 300A, Isolated from Hanford 300A Subsurface Sediments

PubMed Central

Ahmed, Bulbul; Cao, Bin; McLean, Jeffrey S.; Ica, Tuba; Dohnalkova, Alice; Istanbullu, Ozlem; Paksoy, Akin; Fredrickson, Jim K.

2012-01-01

A facultative iron-reducing [Fe(III)-reducing] Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes [Fe(III)-nitrilotriacetic acid and Fe(III)-citrate] but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 μM) of either of the electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 μM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We also found that Paenibacillus sp. 300A could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ∼7:3 in PIPES [piperazine-N,N′-bis(2-ethanesulfonic acid)] and ∼1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments. PMID:22961903

Fe(III) Reduction and U(VI) Immobilization by Paenibacillus sp. Strain 300A, Isolated from Hanford 300A Subsurface Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahmed, B.; Cao, B.; McLean, Jeffrey S.

2012-11-07

A facultative iron-reducing (Fe(III)-reducing) Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes (Fe(III)-NTA and Fe(III)-citrate) but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 µM) of either of electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 µM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We found that Paenibacillus sp. 300A alsomore » could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ~7:3 in PIPES and ~1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments.« less

Use of sediment source fingerprinting to assess the role of subsurface erosion in the supply of fine sediment in a degraded catchment in the Eastern Cape, South Africa.

PubMed

Manjoro, Munyaradzi; Rowntree, Kate; Kakembo, Vincent; Foster, Ian; Collins, Adrian L

2017-06-01

Sediment source fingerprinting has been successfully deployed to provide information on the surface and subsurface sources of sediment in many catchments around the world. However, there is still scope to re-examine some of the major assumptions of the technique with reference to the number of fingerprint properties used in the model, the number of model iterations and the potential uncertainties of using more than one sediment core collected from the same floodplain sink. We investigated the role of subsurface erosion in the supply of fine sediment to two sediment cores collected from a floodplain in a small degraded catchment in the Eastern Cape, South Africa. The results showed that increasing the number of individual fingerprint properties in the composite signature did not improve the model goodness-of-fit. This is still a much debated issue in sediment source fingerprinting. To test the goodness-of-fit further, the number of model repeat iterations was increased from 5000 to 30,000. However, this did not reduce uncertainty ranges in modelled source proportions nor improve the model goodness-of-fit. The estimated sediment source contributions were not consistent with the available published data on erosion processes in the study catchment. The temporal pattern of sediment source contributions predicted for the two sediment cores was very different despite the cores being collected in close proximity from the same floodplain. This highlights some of the potential limitations associated with using floodplain cores to reconstruct catchment erosion processes and associated sediment source contributions. For the source tracing approach in general, the findings here suggest the need for further investigations into uncertainties related to the number of fingerprint properties included in un-mixing models. The findings support the current widespread use of ≤5000 model repeat iterations for estimating the key sources of sediment samples. Copyright © 2016 Elsevier Ltd. All rights reserved.

In situ time-series measurements of subseafloor sediment properties

USGS Publications Warehouse

Wheatcroft, R.A.; Stevens, A.W.; Johnson, R.V.

2007-01-01

The capabilities and diversity of subsurface sediment sensors lags significantly from what is available for the water column, thereby limiting progress in understanding time-dependent seabed exchange and high-frequency acoustics. To help redress this imbalance, a new instrument, the autonomous sediment profiler (ASP), is described herein. ASP consists of a four-electrode, Wenner-type resistivity probe and a thermistor that log data at 0.1-cm vertical intervals over a 58-cm vertical profile. To avoid resampling the same spot on the seafloor, the probes are moved horizontally within a 20 times 100-cm-2 area in one of three preselected patterns. Memory and power capacities permit sampling at hourly intervals for up to 3-mo duration. The system was tested in a laboratory tank and shown to be able to resolve high-frequency sediment consolidation, as well as changes in sediment roughness. In a field test off the southern coast of France, the system collected resistivity and temperature data at hourly intervals for 16 d. Coupled with environmental data collected on waves, currents, and suspended sediment, the ASP is shown to be useful for understanding temporal evolution of subsurface sediment porosity, although no large depositional or erosional events occurred during the deployment. Following a rapid decrease in bottom-water temperature, the evolution of the subsurface temperature field was consistent with the 1-D thermal diffusion equation coupled with advection in the upper 3-4 cm. Collectively, the laboratory and field tests yielded promising results on time-dependent seabed change.

The impact of catchment source group classification on the accuracy of sediment fingerprinting outputs.

PubMed

Pulley, Simon; Foster, Ian; Collins, Adrian L

2017-06-01

The objective classification of sediment source groups is at present an under-investigated aspect of source tracing studies, which has the potential to statistically improve discrimination between sediment sources and reduce uncertainty. This paper investigates this potential using three different source group classification schemes. The first classification scheme was simple surface and subsurface groupings (Scheme 1). The tracer signatures were then used in a two-step cluster analysis to identify the sediment source groupings naturally defined by the tracer signatures (Scheme 2). The cluster source groups were then modified by splitting each one into a surface and subsurface component to suit catchment management goals (Scheme 3). The schemes were tested using artificial mixtures of sediment source samples. Controlled corruptions were made to some of the mixtures to mimic the potential causes of tracer non-conservatism present when using tracers in natural fluvial environments. It was determined how accurately the known proportions of sediment sources in the mixtures were identified after unmixing modelling using the three classification schemes. The cluster analysis derived source groups (2) significantly increased tracer variability ratios (inter-/intra-source group variability) (up to 2122%, median 194%) compared to the surface and subsurface groupings (1). As a result, the composition of the artificial mixtures was identified an average of 9.8% more accurately on the 0-100% contribution scale. It was found that the cluster groups could be reclassified into a surface and subsurface component (3) with no significant increase in composite uncertainty (a 0.1% increase over Scheme 2). The far smaller effects of simulated tracer non-conservatism for the cluster analysis based schemes (2 and 3) was primarily attributed to the increased inter-group variability producing a far larger sediment source signal that the non-conservatism noise (1). Modified cluster analysis based classification methods have the potential to reduce composite uncertainty significantly in future source tracing studies. Copyright © 2016 Elsevier Ltd. All rights reserved.

Gravitational failure of sea cliffs in weakly lithified sediment

USGS Publications Warehouse

Hampton, M.A.

2002-01-01

Gravitational failure of sea cliffs eroded into weakly lithified sediment at several sites in California involves episodic stress-release fracturing and cantilevered block falls. The principal variables that influence the gravitational stability are tensional stresses generated during the release of horizontal confining stress and weakening of the sediment with increased saturation levels. Individual failures typically comprise less than a cubic meter of sediment, but large areas of a cliff face can be affected by sustained instability over a period of several days. Typically, only the outer meter or so of sediment is removed during a failure episode. In-place sediment saturation levels vary over time and space, generally being higher during the rainy season but moderate to high year-round. Laboratory direct-shear tests show that sediment cohesion decreases abruptly with increasing saturation level; the decrease is similar for all tested sediment if the cohesion is normalized by the maximum, dry-sediment cohesion. Large failures that extend over most or all of the height of the sea cliff are uncommon, but a few large wedge-shaped failures sometimes occur, as does separation of large blocks at sea cliff-gully intersections.

Methane hydrate formation in partially water-saturated Ottawa sand

USGS Publications Warehouse

Waite, W.F.; Winters, W.J.; Mason, D.H.

2004-01-01

Bulk properties of gas hydrate-bearing sediment strongly depend on whether hydrate forms primarily in the pore fluid, becomes a load-bearing member of the sediment matrix, or cements sediment grains. Our compressional wave speed measurements through partially water-saturated, methane hydrate-bearing Ottawa sands suggest hydrate surrounds and cements sediment grains. The three Ottawa sand packs tested in the Gas Hydrate And Sediment Test Laboratory Instrument (GHASTLI) contain 38(1)% porosity, initially with distilled water saturating 58, 31, and 16% of that pore space, respectively. From the volume of methane gas produced during hydrate dissociation, we calculated the hydrate concentration in the pore space to be 70, 37, and 20% respectively. Based on these hydrate concentrations and our measured compressional wave speeds, we used a rock physics model to differentiate between potential pore-space hydrate distributions. Model results suggest methane hydrate cements unconsolidated sediment when forming in systems containing an abundant gas phase.

Water retention curve for hydrate-bearing sediments

NASA Astrophysics Data System (ADS)

Dai, Sheng; Santamarina, J. Carlos

2013-11-01

water retention curve plays a central role in numerical algorithms that model hydrate dissociation in sediments. The determination of the water retention curve for hydrate-bearing sediments faces experimental difficulties, and most studies assume constant water retention curves regardless of hydrate saturation. This study employs network model simulation to investigate the water retention curve for hydrate-bearing sediments. Results show that (1) hydrate in pores shifts the curve to higher capillary pressures and the air entry pressure increases as a power function of hydrate saturation; (2) the air entry pressure is lower in sediments with patchy rather than distributed hydrate, with higher pore size variation and pore connectivity or with lower specimen slenderness along the flow direction; and (3) smaller specimens render higher variance in computed water retention curves, especially at high water saturation Sw > 0.7. Results are relevant to other sediment pore processes such as bioclogging and mineral precipitation.

NIGHTHAWK - A Program for Modeling Saturated Batch and Column Experiments Incorporating Equilibrium and Kinetic Biogeochemistry

EPA Science Inventory

NIGHTHAWK simulates the fate and transport of biogeochemically reactive contaminants in the saturated subsurface. Version 1.2 supports batch and one- dimensional advective-dispersive-reactive transport involving a number of biogeochemical processes, including: microbially-mediate...

Characterization of gas hydrate distribution using conventional 3D seismic data in the Pearl River Mouth Basin, South China Sea

USGS Publications Warehouse

Wang, Xiujuan; Qiang, Jin; Collett, Timothy S.; Shi, Hesheng; Yang, Shengxiong; Yan, Chengzhi; Li, Yuanping; Wang, Zhenzhen; Chen, Duanxin

2016-01-01

A new 3D seismic reflection data volume acquired in 2012 has allowed for the detailed mapping and characterization of gas hydrate distribution in the Pearl River Mouth Basin in the South China Sea. Previous studies of core and logging data showed that gas hydrate occurrence at high concentrations is controlled by the presence of relatively coarse-grained sediment and the upward migration of thermogenic gas from the deeper sediment section into the overlying gas hydrate stability zone (BGHSZ); however, the spatial distribution of the gas hydrate remains poorly defined. We used a constrained sparse spike inversion technique to generate acoustic-impedance images of the hydrate-bearing sedimentary section from the newly acquired 3D seismic data volume. High-amplitude reflections just above the bottom-simulating reflectors (BSRs) were interpreted to be associated with the accumulation of gas hydrate with elevated saturations. Enhanced seismic reflections below the BSRs were interpreted to indicate the presence of free gas. The base of the BGHSZ was established using the occurrence of BSRs. In areas absent of well-developed BSRs, the BGHSZ was calculated from a model using the inverted P-wave velocity and subsurface temperature data. Seismic attributes were also extracted along the BGHSZ that indicate variations reservoir properties and inferred hydrocarbon accumulations at each site. Gas hydrate saturations estimated from the inversion of acoustic impedance of conventional 3D seismic data, along with well-log-derived rock-physics models were also used to estimate gas hydrate saturations. Our analysis determined that the gas hydrate petroleum system varies significantly across the Pearl River Mouth Basin and that variability in sedimentary properties as a product of depositional processes and the upward migration of gas from deeper thermogenic sources control the distribution of gas hydrates in this basin.

EVALUATION OF GEOPHYSICAL METHODS FOR THE DETECTION OF SUBSURFACE TETRACHLOROETHYLENE (PCE) IN CONTROLLED SPILL EXPERIMENTS

EPA Science Inventory

Tetrachloroethylene (PCE), typically used as a dry cleaning solvent, is a predominant contaminant in the subsurface at Superfund Sites. PCE is a dense non-aqueous phase liquid (DNAPL) that migrates downward into the earth, leaving behind areas of residual saturation and free prod...

Higher and lowest order mixed finite element approximation of subsurface flow problems with solutions of low regularity

NASA Astrophysics Data System (ADS)

Bause, Markus

2008-02-01

In this work we study mixed finite element approximations of Richards' equation for simulating variably saturated subsurface flow and simultaneous reactive solute transport. Whereas higher order schemes have proved their ability to approximate reliably reactive solute transport (cf., e.g. [Bause M, Knabner P. Numerical simulation of contaminant biodegradation by higher order methods and adaptive time stepping. Comput Visual Sci 7;2004:61-78]), the Raviart- Thomas mixed finite element method ( RT0) with a first order accurate flux approximation is popular for computing the underlying water flow field (cf. [Bause M, Knabner P. Computation of variably saturated subsurface flow by adaptive mixed hybrid finite element methods. Adv Water Resour 27;2004:565-581, Farthing MW, Kees CE, Miller CT. Mixed finite element methods and higher order temporal approximations for variably saturated groundwater flow. Adv Water Resour 26;2003:373-394, Starke G. Least-squares mixed finite element solution of variably saturated subsurface flow problems. SIAM J Sci Comput 21;2000:1869-1885, Younes A, Mosé R, Ackerer P, Chavent G. A new formulation of the mixed finite element method for solving elliptic and parabolic PDE with triangular elements. J Comp Phys 149;1999:148-167, Woodward CS, Dawson CN. Analysis of expanded mixed finite element methods for a nonlinear parabolic equation modeling flow into variably saturated porous media. SIAM J Numer Anal 37;2000:701-724]). This combination might be non-optimal. Higher order techniques could increase the accuracy of the flow field calculation and thereby improve the prediction of the solute transport. Here, we analyse the application of the Brezzi- Douglas- Marini element ( BDM1) with a second order accurate flux approximation to elliptic, parabolic and degenerate problems whose solutions lack the regularity that is assumed in optimal order error analyses. For the flow field calculation a superiority of the BDM1 approach to the RT0 one is observed, which however is less significant for the accompanying solute transport.

Attenuation of seismic waves in rocks saturated with multiphase fluids: theory and experiments

NASA Astrophysics Data System (ADS)

Tisato, N.; Quintal, B.; Chapman, S.; Podladchikov, Y.; Burg, J. P.

2016-12-01

Albeit seismic tomography could provide a detailed image of subsurface fluid distribution, the interpretation of the tomographic signals is often controversial and fails in providing a conclusive map of the subsurface saturation. However, tomographic information is important because the upward migration of multiphase fluids through the crust of the Earth can cause hazardous events such as eruptions, explosions, soil-pollution and earthquakes. In addition, multiphase fluids, such as hydrocarbons, represent important resources for economy. Seismic tomography can be improved considering complex elastic moduli and the attenuation of seismic waves (1/Q) that quantifies the energy lost by propagating elastic waves. In particular, a significant portion of the energy carried by the propagating wave is dissipated in saturated media by the wave-induced-fluid-flow (WIFF) and the wave-induced-gas-exsolution-dissolution (WIGED) mechanism. The latter describes how a propagating wave modifies the thermodynamic equilibrium between different fluid phases causing exsolution and dissolution of gas bubbles in the liquid, which in turn causes a significant frequency-dependent 1/Q and moduli dispersion. The WIGED theory was initially postulated for bubbly magmas but was only recently demonstrated and extended to bubbly water. We report the theory and laboratory experiments that have been performed to confirm the WIGED theory. In particular, we present i) attenuation measurements performed by means of the Broad Band Attenuation Vessel on porous media saturated with water and different gases, and ii) numerical experiments validating the laboratory observations. Then, we extend the theory to fluids and pressure-temperature conditions which are typical of phreatomagmatic and hydrocarbon domains and we compare the propagation of seismic waves in bubble-free and bubble-bearing subsurface domains. This work etends the knowledge of attenuation in rocks saturated with multiphase fluid and emphasizes that the WIGED mechanism is very important to image subsurface gas plumes.

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, Jim K.; Balkwill, David L.; Romine, Margaret F.

Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteriamore » cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.« less

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

PubMed

Fredrickson, J K; Balkwill, D L; Romine, M F; Shi, T

1999-10-01

Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteria cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.

Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages

PubMed Central

Durbin, Alan M.; Teske, Andreas

2012-01-01

Examining the patterns of archaeal diversity in little-explored organic-lean marine subsurface sediments presents an opportunity to study the association of phylogenetic affiliation and habitat preference in uncultured marine Archaea. Here we have compiled and re-analyzed published archaeal 16S rRNA clone library datasets across a spectrum of sediment trophic states characterized by a wide range of terminal electron-accepting processes. Our results show that organic-lean marine sediments in deep marine basins and oligotrophic open ocean locations are inhabited by distinct lineages of archaea that are not found in the more frequently studied, organic-rich continental margin sediments. We hypothesize that different combinations of electron donor and acceptor concentrations along the organic-rich/organic-lean spectrum result in distinct archaeal communities, and propose an integrated classification of habitat characteristics and archaeal community structure. PMID:22666218

Significant contribution of Archaea to extant biomass in marine subsurface sediments.

PubMed

Lipp, Julius S; Morono, Yuki; Inagaki, Fumio; Hinrichs, Kai-Uwe

2008-08-21

Deep drilling into the marine sea floor has uncovered a vast sedimentary ecosystem of microbial cells. Extrapolation of direct counts of stained microbial cells to the total volume of habitable marine subsurface sediments suggests that between 56 Pg (ref. 1) and 303 Pg (ref. 3) of cellular carbon could be stored in this largely unexplored habitat. From recent studies using various culture-independent techniques, no clear picture has yet emerged as to whether Archaea or Bacteria are more abundant in this extensive ecosystem. Here we show that in subsurface sediments buried deeper than 1 m in a wide range of oceanographic settings at least 87% of intact polar membrane lipids, biomarkers for the presence of live cells, are attributable to archaeal membranes, suggesting that Archaea constitute a major fraction of the biomass. Results obtained from modified quantitative polymerase chain reaction and slot-blot hybridization protocols support the lipid-based evidence and indicate that these techniques have previously underestimated archaeal biomass. The lipid concentrations are proportional to those of total organic carbon. On the basis of this relationship, we derived an independent estimate of amounts of cellular carbon in the global marine subsurface biosphere. Our estimate of 90 Pg of cellular carbon is consistent, within an order of magnitude, with previous estimates, and underscores the importance of marine subsurface habitats for global biomass budgets.

Dehalogenation activities and distribution of reductive dehalogenase homologous genes in marine subsurface sediments.

PubMed

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H; Inagaki, Fumio

2009-11-01

Halogenated organic compounds serve as terminal electron acceptors for anaerobic respiration in a diverse range of microorganisms. Here, we report on the widespread distribution and diversity of reductive dehalogenase homologous (rdhA) genes in marine subsurface sediments. A total of 32 putative rdhA phylotypes were detected in sediments from the southeast Pacific off Peru, the eastern equatorial Pacific, the Juan de Fuca Ridge flank off Oregon, and the northwest Pacific off Japan, collected at a maximum depth of 358 m below the seafloor. In addition, significant dehalogenation activity involving 2,4,6-tribromophenol and trichloroethene was observed in sediment slurry from the Nankai Trough Forearc Basin. These results suggest that dehalorespiration is an important energy-yielding pathway in the subseafloor microbial ecosystem.

The effect of hydrate content on seismic attenuation: A case study for Mallik 2L-38 well data, Mackenzie delta, Canada

NASA Astrophysics Data System (ADS)

Chand, Shyam; Minshull, Tim A.

2004-07-01

Observations of velocities in sediments containing gas hydrates show that the strength of sediments increases with hydrate saturation. Hence it is expected that the attenuation of these sediments will decrease with increasing hydrate saturation. However, sonic log measurements in the Mallik 2L-38 well and cross hole tomography measurements in the Mallik field have shown that attenuation increases with hydrate saturation. We studied a range of mechanisms by which increasing hydrate saturation could cause increased attenuation. We found that a difference in permeability between the host sediment and the newly formed hydrate can produce the observed effect. We modelled attenuation in terms of Biot and squirt flow mechanisms in composite media. We have used our model to predict observed attenuations in the Mallik 2L-38 well, Mackenzie Delta, Canada.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tang, Guoping; Luo, Wensui; Brooks, Scott C

We conducted batch and recirculating column titration tests with contaminated acidic sediments with controlled CO2 in the headspace, and extended the geochemical model by Gu et al. (2003, GCA) to better understand and quantify the reactions governing trace metal fate in the subsurface. The sediment titration curve showed slow pH increase due to strong buffering by Al precipitation and CO2 uptake. Assuming precipitation of basaluminite at low saturation index (SI=-4), and decreasing cation exchange selectivity coefficient (kNa\\Al=0.3), the predictions are close to the observed pH and Al; and the model explains 1) the observed Ca, Mg, and Mn concentration decreasemore » by cation exchange with sorbed Al, and 2) the decrease of U by surface complexation with Fe hydroxides at low pH, and precipitation as liebigite (Ca2UO2(CO3)3:10H2O) at pH>5.5. Without further adjustment geochemical parameters, the model describes reasonably well previous sediment and column titration tests without CO2 in the headspace, as well as the new large column test. The apparent inhibition of U and Ni decrease in the large column can be explained by formation of aqueous carbonate complexes and/or competition with carbonate for surface sites. These results indicated that ignoring labile solid phase Al would underestimate base requirement in titration of acidic aquifers.« less

Temperature-dependent sorption of naphthalene, phenanthrene, and pyrene to low organic carbon aquifer sediments

USGS Publications Warehouse

Piatt, Joseph J.; Backhus, Debera A.; Capel, Paul D.; Eisenreich, Steven J.

1996-01-01

Sorption experiments were conducted with naphthalene, phenanthrene, and pyrene on low organic carbon sediments at 4 and 26 °C using batch and column techniques. Experimental controls ensured the absence of biologic and photolytic activity and colloid-free solution supernatants. Equilibrium distribution coefficients (Kd) increased 1.1−1.6 times with a decrease in temperature of 22 °C. Fraction instantaneous sorption (F) values did not change significantly with a decrease in temperature of 22 °C. Desorption rate constants (k2) decreased 1.2−2.6 times with a decrease in temperature of 22 °C. Times to equilibrium were at least 40 h. The magnitude of observed Kd and k2 values and the effect of temperature on Kd (e.g., low enthalpy of sorption) are consistent with sorbate partitioning between the aqueous phase and small amounts of organic matter (foc = 0.02%) on the sediments. The temperature dependence of Kd and k2 may be small as compared to the effects of heterogeneities in field-scale aquifer systems. Thus, thermal gradients may not be of major importance in most saturated subsurface regimes when predicting solute transport. However, aquifer remediation pump-and-treat times could be decreased because increased temperature decreases both retardation and tailing.

ADSORPTION MECHANISMS AND TRANSPORT BEHAVIOR BETWEEN SELENATE AND SELENITE ON DIFFERENT SORBENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Snyder, Michelle MV; Um, Wooyong

Adsorption of different oxidation species of selenium (Se), selenate (SeO42-) and selenite (SeO32-), with varying pHs (2 - 10) and ionic strengths (I = 0.01 M, 0.1 M and 1.0 M NaNO3) was measured on quartz, aluminum oxide, and synthetic iron oxide (ferrihydrite) using batch reactors to obtain a more detailed understanding of the adsorption mechanisms (e.g., inner- and outer-sphere complex). In addition to the batch experiments with single minerals contained in native Hanford Site sediment, additional batch adsorption studies were conducted with native Hanford Site sediment and groundwater as a function of 1) total Se concentration (from 0.01 tomore » 10 mg L-1) and 2) soil to solution ratios (1:20 and 1:2 grams per mL). Results from these batch studies were compared to a set of saturated column experiments that were conducted with natural Hanford sediment and groundwater spiked with either selenite or selenate to observe the transport behavior of these species. Both batch and column results indicated that selenite adsorption was consistently higher than that of selenate in all experimental conditions used. These different adsorption mechanisms between selenite and selenate result in the varying mobility of Se in the subsurface environment and explain the dependence on the oxidation species.« less

Hydraulic and geochemical framework of the Idaho National Engineering and Environmental Laboratory vadose zone

USGS Publications Warehouse

Nimmo, John R.; Rousseau, Joseph P.; Perkins, Kim S.; Stollenwerk, Kenneth G.; Glynn, Pierre D.; Bartholomay, Roy C.; Knobel, LeRoy L.

2004-01-01

Questions of major importance for subsurface contaminant transport at the Idaho National Engineering and Environmental Laboratory (INEEL) include (i) travel times to the aquifer, both average or typical values and the range of values to be expected, and (ii) modes of contaminant transport, especially sorption processes. The hydraulic and geochemical framework within which these questions are addressed is dominated by extreme heterogeneity in a vadose zone and aquifer consisting of interbedded basalts and sediments. Hydraulically, major issues include diverse possible types of flow pathways, extreme anisotropy, preferential flow, combined vertical and horizontal flow, and temporary saturation or perching. Geochemically, major issues include contaminant mobility as influenced by redox conditions, the concentration of organic and inorganic complexing solutes and other local variables, the interaction with infiltrating waters and with the contaminant source environment, and the aqueous speciation of contaminants such as actinides. Another major issue is the possibility of colloid transport, which inverts some of the traditional concepts of mobility, as sorbed contaminants on mobile colloids may be transported with ease compared with contaminants that are not sorbed. With respect to the goal of minimizing aquifer concentrations of contaminants, some characteristics of the vadose zone are essentially completely favorable. Examples include the great thickness (200 m) of the vadose zone, and the presence of substantial quantities of fine sediments that can retard contaminant transport both hydraulically and chemically. Most characteristics, however, have both favorable and unfavorable aspects. For example, preferential flow, as promoted by several notable features of the vadose zone at the INEEL, can provide fast, minimally sorbing pathways for contaminants to reach the aquifer easily, but it also leads to a wide dispersal of contaminants in a large volume of subsurface material, thus increasing the opportunity for dilution and sorption.

Bubbles in Sediments

DTIC Science & Technology

1998-09-30

model (simplest) to a fluid saturated poroelastic model (most complex). Based on the results of the theoretical treatment, a laboratory experiment has...are widely separated for each model . Finally, if a sediment is modeled by Biot theory, which describes wave propagation in a saturated poroelastic ...application of Biot theory to sediment acoustics . The predicted resonance behavior under each model is distinct, so an optical extinction measurement may

Bubbles in Sediments

DTIC Science & Technology

1997-09-30

modeled as either an effective fluid, effective viscoelastic solid, or a saturated poroelastic medium. The analysis included only the breathing mode...separated for each model . Finally, if a sediment is modeled by Biot theory, which describes wave propagation in a saturated poroelastic medium, then two...theory to sediment acoustics . The predicted resonance behavior under each model is distinct, so an optical extinction measurement may provide an

Active fungi amidst a marine subsurface RNA paleome

NASA Astrophysics Data System (ADS)

Orsi, W.; Biddle, J.; Edgcomb, V.

2012-12-01

The deep marine subsurface is a vast habitat for microbial life where cells may live on geologic timescales. Since extracellular DNA in sediments may be preserved on long timescales, ribosomal RNA (rRNA) is suggested to be a proxy for the active fraction of a microbial community in the subsurface. During an investigation of eukaryotic 18S rRNA signatures by amplicon pyrosequencing, metazoan, plant, and diatom rRNA signatures were recovered from marine sediments up to 2.7 million years old, suggesting that rRNA may be much more stable than previously considered in the marine subsurface. This finding confirms the concept of a paleome, extending it to include rRNA. Within the same dataset, unique profiles of fungi were found across a range of marine subsurface provinces exhibiting statistically significant correlations with total organic carbon (TOC), sulfide, and dissolved inorganic carbon (DIC). Sequences from metazoans, plants and diatoms showed different correlation patterns, consistent with a depth-controlled paleome. The fungal correlations with geochemistry allow the inference that some fungi are active and adapted for survival in the marine subsurface. A metatranscriptomic analysis of fungal derived mRNA confirms that fungi are metabolically active and utilize a range of organic and inorganic substrates in the marine subsurface.

Use of PRD1 bacteriophage in groundwater viral transport, inactivation, and attachment studies

USGS Publications Warehouse

Harvey, Ronald W.; Ryan, Joseph N.

2004-01-01

PRD1, an icosahedra-shaped, 62 nm (diameter), double-stranded DNA bacteriophage with an internal membrane, has emerged as an important model virus for studying the manner in which microorganisms are transported through a variety of groundwater environments. The popularity of this phage for use in transport studies involving geologic media is due, in part, to its relative stability over a range of temperatures and low degree of attachment in aquifer sediments. Laboratory and field investigations employing PRD1 are leading to a better understanding of viral attachment and transport behaviors in saturated geologic media and to improved methods for describing mathematically subsurface microbial transport at environmentally significant field scales. Radioisotopic labeling of PRD1 is facilitating additional information about the nature of viral interactions with solid surfaces in geologic media, the importance of iron oxide surfaces, and allowing differentiation between inactivation and attachment in field-scale tracer tests.

Design data collection with Skylab microwave radiometer-scatterometer S-193, volume 2

NASA Technical Reports Server (NTRS)

Moore, R. K.; Ulaby, F. T. (Principal Investigator)

1975-01-01

The author has identified the following significant results. Skylab S-193 radiometer/scatterometer produced terrain responses with various polarizations and observation angles for cells of 100 to 400 sq km area. Classification of the observations into natural categories was achieved by K-means and spatial clustering algorithms. Microwave data acquired over the Great Salt Lake Desert area by sensors aboard Skylab and Nimbus 5 indicate that the microwave emission and backscatter were strongly influenced by contributions from subsurface layers of sediment saturated with brine. Correlations were noted between microwave backscatter response at approximately 33 deg from scatterometer (operating at 13.9 GHz) and the configuration of ground targets in Brazil as discerned from coarse scale maps. With limited, available ground truth, these correlations were sufficient to permit the production of image-like displays which bear a marked resemblance to known terrain features in several instances.

Surface water-groundwater exchange in transitional coastal environments by airborne electromagnetics: The Venice Lagoon example

NASA Astrophysics Data System (ADS)

Viezzoli, A.; Tosi, L.; Teatini, P.; Silvestri, S.

2010-01-01

A comprehensive investigation of the mixing between salt/fresh surficial water and groundwater in transitional environments is an issue of paramount importance considering the ecological, cultural, and socio-economic relevance of coastal zones. Acquiring information, which can improve the process understanding, is often logistically challenging, and generally expensive and slow in these areas. Here we investigate the capability of airborne electromagnetics (AEM) at the margin of the Venice Lagoon, Italy. The quasi-3D interpretation of the AEM outcome by the spatially constrained inversion (SCI) methodology allows us to accurately distinguish several hydrogeological features down to a depth of about 200 m. For example, the extent of the saltwater intrusion in coastal aquifers and the transition between the upper salt saturated and the underlying fresher sediments below the lagoon bottom are detected. The research highlights the AEM capability to improve the hydrogeological characterization of subsurface processes in worldwide lagoons, wetlands, deltas.

The effect of biogenic Fe(II) on the stability and sorption of Co(II)EDTA 2- to goethite and a subsurface sediment

NASA Astrophysics Data System (ADS)

Zachara, John M.; Smith, Steven C.; Fredrickson, James K.

2000-04-01

Laboratory experiments were conducted with suspensions of goethite (α-FeOOH) and a subsurface sediment to assess the influence of bacterial iron reduction on the fate of Co(II)EDTA 2-, a representative metal-ligand complex of intermediate stability (log K Co(II)EDTA = 17.97). The goethite was synthetic (ca. 55 m 2/g) and the sediment was a Pleistocene age, Fe(III) oxide-containing material from the Atlantic coastal plain (Milford). Shewanella alga strain BrY, a dissimilatory iron reducing bacterium (DIRB), was used to promote Fe(III) oxide reduction. Sorption isotherms and pH adsorption edges were measured for Co 2+, Fe 2+, Co(II)EDTA 2-, and Fe(II)EDTA 2- on the two sorbents in 0.001 mol/L Ca(ClO 4) 2 to aid in experiment interpretation. Anoxic suspensions of the sorbents in PIPES buffer at pH 6.5-7.0 were spiked with Co(II)EDTA 2- (10 -5 mol/L, 60Co and 14EDTA labeled), inoculated with BrY (1-6 × 10 8 organisms/mL), and the headspace filled with a N 2/H 2 gas mix. The experiments were conducted under non-growth conditions. The medium did not contain PO 43- (with one exception), trace elements, or vitamins. The tubes were incubated under anoxic conditions at 25°C for time periods in excess of 100 d. Replicate tubes were sacrificed and analyzed at desired time periods for pH, Fe(II) TOT, Fe (aq)2+, 60Co, and 14EDTA. Abiotic analogue experiments were conducted where Fe (aq)2+ was added in increasing concentration to Co(II)EDTA 2-/mineral suspensions to simulate the influence of bacterial Fe(II) evolution. The DIRB generated Fe(II) from both goethite and the Milford sediment that was strongly sorbed by mineral surfaces. Aqueous Fe 2+ increased during the experiment as surfaces became saturated; Fe (aq)2+ induced the dissociation of Co(II)EDTA 2- into a mixture of Co 2+, Co(II)EDTA 2-, and Fe(II)EDTA 2- (log K Fe(II)EDTA = 15.98). The extent of dissociation of Co(II)EDTA 2- was greater in the subsurface sediment because it sorbed Fe(II) less strongly than did goethite. The post dissociation sorption behavior of Co 2+ was dependent on pH and the intrinsic sorptivity of the solid phases. Dissociation generally lead to an increase in the sorption (e.g., K d) of Co 2+ relative to EDTA 4- (form unspecified). Sorbed biogenic Fe(II) competed with free Co (aq)2+and reduced its sorption relative to unreduced material. It is concluded that cationic radionuclides such as 60Co or 239/240Pu, which may be mobilized from disposed wastes by complexation with EDTA 4-, may become immobilized in groundwater zones where dissimilatory bacterial iron reduction is operative.

Vadose zone microbiology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kieft, Thomas L.; Brockman, Fred J.

2001-01-17

The vadose zone is defined as the portion of the terrestrial subsurface that extends from the land surface downward to the water table. As such, it comprises the surface soil (the rooting zone), the underlying subsoil, and the capillary fringe that directly overlies the water table. The unsaturated zone between the rooting zone and the capillary fringe is termed the "intermediate zone" (Chapelle, 1993). The vadose zone has also been defined as the unsaturated zone, since the sediment pores and/or rock fractures are generally not completely water filled, but instead contain both water and air. The latter characteristic results inmore » the term "zone of aeration" to describe the vadose zone. The terms "vadose zone," "unsaturated zone", and "zone of aeration" are nearly synonymous, except that the vadose zone may contain regions of perched water that are actually saturated. The term "subsoil" has also been used for studies of shallow areas of the subsurface immediately below the rooting zone. This review focuses almost exclusively on the unsaturated region beneath the soil layer since there is already an extensive body of literature on surface soil microbial communities and process, e.g., Paul and Clark (1989), Metting (1993), Richter and Markowitz, (1995), and Sylvia et al. (1998); whereas the deeper strata of the unsaturated zone have only recently come under scrutiny for their microbiological properties.« less

Arsenic, vanadium, iron, and manganese biogeochemistry in a deltaic wetland, southern Louisiana, USA

DOE PAGES

Telfeyan, Katherine; Breaux, Alexander; Kim, Jihyuk; ...

2017-04-05

Geochemical cycling of the redox-sensitive trace elements arsenic (As) and vanadium (V) was examined in shallow pore waters from a marsh in an interdistributary embayment of the lower Mississippi River Delta. In particular, we explore how redox changes with depth and distance from the Mississippi River affect As and V cycling in the marsh pore waters. Previous geophysical surveys and radon mass balance calculations suggested that Myrtle Grove Canal and bordering marsh receive fresh groundwater, derived in large part from seepage of the Mississippi River, which subsequently mixes with brackish waters of Barataria Bay. In addition, the redox geochemistry ofmore » pore waters in the wetlands is affected by Fe and S cycling in the shallow subsurface (0-20 cm). Sediments with high organic matter content undergo SO 4 2- reduction, a process ubiquitous in the shallow subsurface but largely absent at greater depths (~3 m). Instead, at depth, in the absence of organic-rich sediments, Fe concentrations are elevated, suggesting that reduction of Fe(III) oxides/oxyhydroxides buffers redox conditions. Arsenic and V cycling in the shallow subsurface are decoupled from their behavior at depth, where both V and As appear to be removed from solution by either diffusion or adsorption onto, or co-precipitation with, authigenic minerals within the deeper aquifer sediments. Pore water As concentrations are greatest in the shallow subsurface (e.g., up to 315 nmol kg -1 in the top ~20 cm of the sediment) but decrease with depth, reaching values <30 nmol kg -1 at depths between 3 and 4 m. Vanadium concentrations appear to be tightly coupled to Fe cycling in the shallow subsurface, but at depth, V may be adsorbed to clay or sedimentary organic matter (SOM). Diffusive fluxes are calculated to examine the export of trace elements from the shallow marsh pore waters to the overlying canal water that floods the marsh. The computed fluxes suggest that the shallow sediment serves as a source of Fe, Mn, and As to the surface waters, whereas the sediments act as a sink for V. Iron and Mn fluxes are substantial, ranging from 50 to 30,000 and 770 to 4,300 nmol cm -2 day -1, respectively, whereas As fluxes are much less, ranging from 2.1 to 17 nmol cm -2 day -1. Vanadium fluxes range from 3.0 nmol cm -2 day -1 directed into the sediment to 1.7 nmol cm -2 day -1 directed out of the sediment« less

Arsenic, vanadium, iron, and manganese biogeochemistry in a deltaic wetland, southern Louisiana, USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Telfeyan, Katherine; Breaux, Alexander; Kim, Jihyuk

Geochemical cycling of the redox-sensitive trace elements arsenic (As) and vanadium (V) was examined in shallow pore waters from a marsh in an interdistributary embayment of the lower Mississippi River Delta. In particular, we explore how redox changes with depth and distance from the Mississippi River affect As and V cycling in the marsh pore waters. Previous geophysical surveys and radon mass balance calculations suggested that Myrtle Grove Canal and bordering marsh receive fresh groundwater, derived in large part from seepage of the Mississippi River, which subsequently mixes with brackish waters of Barataria Bay. In addition, the redox geochemistry ofmore » pore waters in the wetlands is affected by Fe and S cycling in the shallow subsurface (0-20 cm). Sediments with high organic matter content undergo SO 4 2- reduction, a process ubiquitous in the shallow subsurface but largely absent at greater depths (~3 m). Instead, at depth, in the absence of organic-rich sediments, Fe concentrations are elevated, suggesting that reduction of Fe(III) oxides/oxyhydroxides buffers redox conditions. Arsenic and V cycling in the shallow subsurface are decoupled from their behavior at depth, where both V and As appear to be removed from solution by either diffusion or adsorption onto, or co-precipitation with, authigenic minerals within the deeper aquifer sediments. Pore water As concentrations are greatest in the shallow subsurface (e.g., up to 315 nmol kg -1 in the top ~20 cm of the sediment) but decrease with depth, reaching values <30 nmol kg -1 at depths between 3 and 4 m. Vanadium concentrations appear to be tightly coupled to Fe cycling in the shallow subsurface, but at depth, V may be adsorbed to clay or sedimentary organic matter (SOM). Diffusive fluxes are calculated to examine the export of trace elements from the shallow marsh pore waters to the overlying canal water that floods the marsh. The computed fluxes suggest that the shallow sediment serves as a source of Fe, Mn, and As to the surface waters, whereas the sediments act as a sink for V. Iron and Mn fluxes are substantial, ranging from 50 to 30,000 and 770 to 4,300 nmol cm -2 day -1, respectively, whereas As fluxes are much less, ranging from 2.1 to 17 nmol cm -2 day -1. Vanadium fluxes range from 3.0 nmol cm -2 day -1 directed into the sediment to 1.7 nmol cm -2 day -1 directed out of the sediment« less

Reoxidation of estuarine sediments during simulated resuspension events: Effects on nutrient and trace metal mobilisation

NASA Astrophysics Data System (ADS)

Vidal-Durà, Andrea; Burke, Ian T.; Stewart, Douglas I.; Mortimer, Robert J. G.

2018-07-01

Estuarine environments are considered to be nutrient buffer systems as they regulate the delivery of nutrients from rivers to the ocean. In the Humber Estuary (UK) seawater and freshwater mixing during tidal cycles leads to the mobilisation of oxic surface sediments (0-1 cm). However, less frequent seasonal events can also mobilise anoxic subsurface (5-10 cm) sediments, which may have further implications for the estuarine geochemistry. A series of batch experiments were carried out on surface and subsurface sediments taken from along the salinity gradient of the Humber Estuary. The aim was to investigate the geochemical processes driving major element (N, Fe, S, and Mn) redox cycling and trace metal behaviour during simulated resuspension events. The magnitude of major nutrient and metal release was significantly greater during the resuspension of outer estuarine sediments rather than from inner estuarine sediments. When comparing resuspension of surface versus subsurface sediment, only the outer estuary experiments showed significant differences in major nutrient behaviour with sediment depth. In general, any ammonium, manganese and trace metals (Cu and Zn) released during the resuspension experiments were rapidly removed from solution as new sorption sites (i.e. Fe/Mn oxyhydroxides) formed. Therefore Humber estuary sediments showed a scavenging capacity for these dissolved species and hence may act as an ultimate sink for these elements. Due to the larger aerial extent of the outer estuary intertidal mudflats in comparison with the inner estuary area, the mobilisation of the outer estuary sediments (more reducing and richer in sulphides and iron) may have a greater impact on the transport and cycling of nutrients and trace metals. Climate change-associated sea level rise combined with an increasing frequency of major storm events in temperate zones, which are more likely to mobilise deeper sediment regions, will impact the nutrient and metal inputs to the coastal waters, and therefore enhance the likelihood of eutrophication in this environment.

Modeling GPR data to interpret porosity and DNAPL saturations for calibration of a 3-D multiphase flow simulation

USGS Publications Warehouse

Sneddon, Kristen W.; Powers, Michael H.; Johnson, Raymond H.; Poeter, Eileen P.

2002-01-01

Dense nonaqueous phase liquids (DNAPLs) are a pervasive and persistent category of groundwater contamination. In an effort to better understand their unique subsurface behavior, a controlled and carefully monitored injection of PCE (perchloroethylene), a typical DNAPL, was performed in conjunction with the University of Waterloo at Canadian Forces Base Borden in 1991. Of the various geophysical methods used to monitor the migration of injected PCE, the U.S. Geological Survey collected 500-MHz ground penetrating radar (GPR) data. These data are used in determining calibration parameters for a multiphase flow simulation. GPR data were acquired over time on a fixed two-dimensional surficial grid as the DNAPL was injected into the subsurface. Emphasis is on the method of determining DNAPL saturation values from this time-lapse GPR data set. Interactive full-waveform GPR modeling of regularized field traces resolves relative dielectric permittivity versus depth profiles for pre-injection and later-time data. Modeled values are end members in recursive calculations of the Bruggeman-Hanai-Sen (BHS) mixing formula, yielding interpreted pre-injection porosity and post-injection DNAPL saturation values. The resulting interpreted physical properties of porosity and DNAPL saturation of the Borden test cell, defined on a grid spacing of 50 cm with 1-cm depth resolution, are used as observations for calibration of a 3-D multiphase flow simulation. Calculated values of DNAPL saturation in the subsurface at 14 and 22 hours after the start of injection, from both the GPR and the multiphase flow modeling, are interpolated volumetrically and presented for visual comparison.

Are Microbial Nanowires Responsible for Geoelectrical Changes at Hydrocarbon Contaminated Sites?

NASA Astrophysics Data System (ADS)

Hager, C.; Atekwana, E. A.; Gorby, Y. A.; Duris, J. W.; Allen, J. P.; Atekwana, E. A.; Ownby, C.; Rossbach, S.

2007-05-01

Significant advances in near-surface geophysics and biogeophysics in particular, have clearly established a link between geoelectrical response and the growth and enzymatic activities of microbes in geologic media. Recent studies from hydrocarbon contaminated sites suggest that the activities of distinct microbial populations, specifically syntrophic, sulfate reducing, and dissimilatory iron reducing microbial populations are a contributing factor to elevated sediment conductivity. However, a fundamental mechanistic understanding of the processes and sources resulting in the measured electrical response remains uncertain. The recent discovery of bacterial nanowires and their electron transport capabilities suggest that if bacterial nanowires permeate the subsurface, they may in part be responsible for the anomalous conductivity response. In this study we investigated the microbial population structure, the presence of nanowires, and microbial-induced alterations of a hydrocarbon contaminated environment and relate them to the sediments' geoelectrical response. Our results show that microbial communities varied substantially along the vertical gradient and at depths where hydrocarbons saturated the sediments, ribosomal intergenic spacer analysis (RISA) revealed signatures of microbial communities adapted to hydrocarbon impact. In contrast, RISA profiles from a background location showed little community variations with depth. While all sites showed evidence of microbial activity, a scanning electron microscope (SEM) study of sediment from the contaminated location showed pervasive development of "nanowire-like structures" with morphologies consistent with nanowires from laboratory experiments. SEM analysis suggests extensive alteration of the sediments by microbial Activity. We conclude that, excess organic carbon (electron donor) but limited electron acceptors in these environments cause microorganisms to produce nanowires to shuttle the electrons as they seek for distant electron acceptors. Hence, electron flow via bacterial nanowires may contribute to the geoelectrical response.

Anisotropic Velocities of Gas Hydrate-Bearing Sediments in Fractured Reservoirs

USGS Publications Warehouse

Lee, Myung W.

2009-01-01

During the Indian National Gas Hydrate Program Expedition 01 (NGHP-01), one of the richest marine gas hydrate accumulations was discovered at drill site NGHP-01-10 in the Krishna-Godavari Basin, offshore of southeast India. The occurrence of concentrated gas hydrate at this site is primarily controlled by the presence of fractures. Gas hydrate saturations estimated from P- and S-wave velocities, assuming that gas hydrate-bearing sediments (GHBS) are isotropic, are much higher than those estimated from the pressure cores. To reconcile this difference, an anisotropic GHBS model is developed and applied to estimate gas hydrate saturations. Gas hydrate saturations estimated from the P-wave velocities, assuming high-angle fractures, agree well with saturations estimated from the cores. An anisotropic GHBS model assuming two-component laminated media - one component is fracture filled with 100-percent gas hydrate, and the other component is the isotropic water-saturated sediment - adequately predicts anisotropic velocities at the research site.

Deep subsurface life from North Pond: Enrichment, isolation, characterization and genomes of heterotrophic bacteria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Russell, Joseph A.; Leon-Zayas, Rosa; Wrighton, Kelly

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic watercolumn west of the Mid-Atlantic Ridge at 22° N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sedimentmore » column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. Furthermore, the cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.« less

Deep subsurface life from North Pond: Enrichment, isolation, characterization and genomes of heterotrophic bacteria

DOE PAGES

Russell, Joseph A.; Leon-Zayas, Rosa; Wrighton, Kelly; ...

2016-05-10

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic watercolumn west of the Mid-Atlantic Ridge at 22° N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sedimentmore » column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. Furthermore, the cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.« less

Microbially catalyzed nitrate-dependent metal/radionuclide oxidation in shallow subsurface sediments

NASA Astrophysics Data System (ADS)

Weber, K.; Healy, O.; Spanbauer, T. L.; Snow, D. D.

2011-12-01

Anaerobic, microbially catalyzed nitrate-dependent metal/radionuclide oxidation has been demonstrated in a variety of sediments, soils, and groundwater. To date, studies evaluating U bio-oxidation and mobilization have primarily focused on anthropogenically U contaminated sites. In the Platte River Basin U originating from weathering of uranium-rich igneous rocks in the Rocky Mountains was deposited in shallow alluvial sediments as insoluble reduced uranium minerals. These reduced U minerals are subject to reoxidation by available oxidants, such nitrate, in situ. Soluble uranium (U) from natural sources is a recognized contaminant in public water supplies throughout the state of Nebraska and Colorado. Here we evaluate the potential of anaerobic, nitrate-dependent microbially catalyzed metal/radionuclide oxidation in subsurface sediments near Alda, NE. Subsurface sediments and groundwater (20-64ft.) were collected from a shallow aquifer containing nitrate (from fertilizer) and natural iron and uranium. The reduction potential revealed a reduced environment and was confirmed by the presence of Fe(II) and U(IV) in sediments. Although sediments were reduced, nitrate persisted in the groundwater. Nitrate concentrations decreased, 38 mg/L to 30 mg/L, with increasing concentrations of Fe(II) and U(IV). Dissolved U, primarily as U(VI), increased with depth, 30.3 μg/L to 302 μg/L. Analysis of sequentially extracted U(VI) and U(IV) revealed that virtually all U in sediments existed as U(IV). The presence of U(IV) is consistent with reduced Fe (Fe(II)) and low reduction potential. The increase in aqueous U concentrations with depth suggests active U cycling may occur at this site. Tetravalent U (U(IV)) phases are stable in reduced environments, however the input of an oxidant such as oxygen or nitrate into these systems would result in oxidation. Thus co-occurrence of nitrate suggests that nitrate could be used by bacteria as a U(IV) oxidant. Most probable number enumeration of nitrate-dependent U(IV) oxidizing microorganisms demonstrated an abundant community ranging from 1.61x104 to 2.74x104 cells g-1 sediment. Enrichments initiated verified microbial U reduction and U oxidation coupled to nitrate reduction. Sediment slurries were serially diluted and incubated over a period of eight weeks and compared to uninoculated controls. Oxidation (0-4,554 μg/L) and reduction (0-55 μg/L) of U exceeded uninoculated controls further providing evidence of a U biogeochemical cycling in these subsurface sediments. The oxidation of U(IV) could contribute to U mobilization in the groundwater and result in decreased water quality. Not only could nitrate serve as an oxidant, but Fe(III) could also contribute to U mobilization. Nitrate-dependent Fe(II) oxidation is an environmentally ubiquitous process facilitated by a diversity of microorganisms. Additional research is necessary in order to establish a role of biogenic Fe(III) oxides in U geochemical cycling at this site. These microbially mediated processes could also have a confounding effect on uranium mobility in subsurface environments.

Structure and function of subsurface microbial communities affecting radionuclide transport and bioimmobilization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kostka, Joel E.; Prakash, Om; Green, Stefan J.

2012-05-01

Our objectives were to: 1) isolate and characterize novel anaerobic prokaryotes from subsurface environments exposed to high levels of mixed contaminants (U(VI), nitrate, sulfate), 2) elucidate the diversity and distribution of metabolically active metal- and nitrate-reducing prokaryotes in subsurface sediments, and 3) determine the biotic and abiotic mechanisms linking electron transport processes (nitrate, Fe(III), and sulfate reduction) to radionuclide reduction and immobilization. Mechanisms of electron transport and U(VI) transformation were examined under near in situ conditions in sediment microcosms and in field investigations. Field sampling was conducted at the Oak Ridge Field Research Center (ORFRC), in Oak Ridge, Tennessee. Themore » ORFRC subsurface is exposed to mixed contamination predominated by uranium and nitrate. In short, we effectively addressed all 3 stated objectives of the project. In particular, we isolated and characterized a large number of novel anaerobes with a high bioremediation potential that can be used as model organisms, and we are now able to quantify the function of subsurface sedimentary microbial communities in situ using state-of-the-art gene expression methods (molecular proxies).« less

Impacts of Hydrate Distribution on the Hydro-Thermo-Mechanical Properties of Hydrate-Bearing Sediments

NASA Astrophysics Data System (ADS)

Dai, S.; Seol, Y.

2015-12-01

In general, hydrate makes the sediments hydraulically less conductive, thermally more conductive, and mechanically stronger; yet the dependency of these physical properties on hydrate saturation varies with hydrate distribution and morphology. Hydrate distribution in sediments may cause the bulk physical properties of their host sediments varying several orders of magnitude even with the same amount of hydrate. In natural sediments, hydrate morphology is inherently governed by the burial depth and the grain size of the host sediments. Compare with patchy hydrate, uniformly distributed hydrate is more destructive to fluid flow, yet leads to higher gas and water permeability during hydrate dissociation due to the easiness of forming percolation paths. Water and hydrate have similar thermal conductivity values; the bulk thermal conductivity of hydrate-bearing sediments depends critically on gas-phase saturation. 60% of gas saturation may result in evident thermal conductivity drop and hinder further gas production. Sediments with patchy hydrate yield lower stiffness than that with cementing hydrate but higher stiffness than that with pore filling and loading bearing hydrate. Besides hydrate distribution, the stress state and loading history also play an important role in the mechanical behavior of hydrate-bearing sediments.

Elevated gas hydrate saturation within silt and silty clay sediments in the Shenhu area, South China Sea

USGS Publications Warehouse

Wang, X.; Hutchinson, D.R.; Wu, S.; Yang, S.; Guo, Y.

2011-01-01

Gas hydrate saturations were estimated using five different methods in silt and silty clay foraminiferous sediments from drill hole SH2 in the South China Sea. Gas hydrate saturations derived from observed pore water chloride values in core samples range from 10 to 45% of the pore space at 190-221 m below seafloor (mbsf). Gas hydrate saturations estimated from resistivity (Rt) using wireline logging results are similar and range from 10 to 40.5% in the pore space. Gas hydrate saturations were also estimated by P wave velocity obtained during wireline logging by using a simplified three-phase equation (STPE) and effective medium theory (EMT) models. Gas hydrate saturations obtained from the STPE velocity model (41.0% maximum) are slightly higher than those calculated with the EMT velocity model (38.5% maximum). Methane analysis from a 69 cm long depressurized core from the hydrate-bearing sediment zone indicates that gas hydrate saturation is about 27.08% of the pore space at 197.5 mbsf. Results from the five methods show similar values and nearly identical trends in gas hydrate saturations above the base of the gas hydrate stability zone at depths of 190 to 221 mbsf. Gas hydrate occurs within units of clayey slit and silt containing abundant calcareous nannofossils and foraminifer, which increase the porosities of the fine-grained sediments and provide space for enhanced gas hydrate formation. In addition, gas chimneys, faults, and fractures identified from three-dimensional (3-D) and high-resolution two-dimensional (2-D) seismic data provide pathways for fluids migrating into the gas hydrate stability zone which transport methane for the formation of gas hydrate. Sedimentation and local canyon migration may contribute to higher gas hydrate saturations near the base of the stability zone. Copyright 2011 by the American Geophysical Union.

Factors Effecting the Fate and Transport of CL-20 in the Vadose Zone and Groundwater: Final Report 2002 - 2004 SERDP Project CP-1255

DOE Office of Scientific and Technical Information (OSTI.GOV)

Szecsody, James E.; Riley, Robert G.; Devary, Brooks J.

2005-06-01

This SERDP-funded project was initiated to investigate the fate of CL-20 in the subsurface environment, with a focus on identification and quantification of geochemical and microbial reactions of CL-20. CL-20 can be released to the surface and subsurface terrestrial environment by: a) manufacturing processes, b) munition storage, and c) use with low order detonation or unexploded ordnance. The risk of far-field subsurface migration was assessed through labora-tory experiments with a variety of sediments and subsurface materials to quantify processes that control CL-20 sorption-limited migration and degradation. Results of this study show that CL-20 will exhibit differing behavior in the subsurfacemore » terrestrial environment: 1. CL-20 on the sediment surface will photodegrade and interact with plants/animals (described in other SERDP projects CU 1254, 1256). CL-20 will exhibit greater sorption in humid sediments to organic matter. Transport will be solubility limited (i.e., low CL-20 aqueous solubility). 2. CL-20 infiltration into soils (<2 m) from spills will be subject to sorption to soil organic matter (if present), and low to high biodegradation rates (weeks to years) depending on the microbial population (greater in humid environment). 3. CL-20 in the vadose zone (>2 m) will be, in most cases, subject to low sorption and low degradation rates, so would persist in the subsurface environment and be at risk for deep migration. Low water content in arid regions will result in a decrease in both sorption and the degradation rate. Measured degradation rates in unsaturated sediments of years would result in significant subsurface migration distances. 4. CL-20 in groundwater will be subject to some sorption but likely very slow degradation rates. CL-20 sorption will be greater than RDX. Most CL-20 degradation will be abiotic (ferrous iron and other transition metals), because most deep subsurface systems have extremely low natural microbial populations. Degradation rates will range from weeks (iron reducing systems) to years. Although CL-20 will move rapidly through most sediments in the terrestrial environment, subsurface remediation can be utilized for cleanup. Transformation of CL-20 to intermediates can be rapidly accomplished under: a) reducing conditions (CL-20 4.1 min. half-life, RDX 18 min. half-life), b) alkaline (pH >10) conditions, and c) bioremediation with added nutrients. CL-20 degradation to intermediates may be insufficient to mitigate environmental impact, as the toxicity of many of these compounds is unknown. Biostimulation in oxic to reducing systems by carbon and nutrient addition can mineralize CL-20, with the most rapid rates occurring under reducing conditions.« less

STRUCTURE AND FUNCTION OF SUBSURFACE MICROBIAL COMMUNITIES AFFECTING RADIONUCLIDE TRANSPORT AND BIOIMMOBILIZATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Joel E. Kostka; Lee Kerkhof; Kuk-Jeong Chin

2011-06-15

The objectives of this project were to: (1) isolate and characterize novel anaerobic prokaryotes from subsurface environments exposed to high levels of mixed contaminants (U(VI), nitrate, sulfate), (2) elucidate the diversity and distribution of metabolically active metal- and nitrate-reducing prokaryotes in subsurface sediments, and (3) determine the biotic and abiotic mechanisms linking electron transport processes (nitrate, Fe(III), and sulfate reduction) to radionuclide reduction and immobilization. Mechanisms of electron transport and U(VI) transformation were examined under near in situ conditions in sediment microcosms and in field investigations at the Oak Ridge Field Research Center (ORFRC), in Oak Ridge, Tennessee, where themore » subsurface is exposed to mixed contamination predominated by uranium and nitrate. A total of 20 publications (16 published or 'in press' and 4 in review), 10 invited talks, and 43 contributed seminars/ meeting presentations were completed during the past four years of the project. PI Kostka served on one proposal review panel each year for the U.S. DOE Office of Science during the four year project period. The PI leveraged funds from the state of Florida to purchase new instrumentation that aided the project. Support was also leveraged by the PI from the Joint Genome Institute in the form of two successful proposals for genome sequencing. Draft genomes are now available for two novel species isolated during our studies and 5 more genomes are in the pipeline. We effectively addressed each of the three project objectives and research highlights are provided. Task I - Isolation and characterization of novel anaerobes: (1) A wide range of pure cultures of metal-reducing bacteria, sulfate-reducing bacteria, and denitrifying bacteria (32 strains) were isolated from subsurface sediments of the Oak Ridge Field Research Center (ORFRC), where the subsurface is exposed to mixed contamination of uranium and nitrate. These isolates which are new to science all show high sequence identity to sequences retrieved from ORFRC subsurface. (2) Based on physiological and phylogenetic characterization, two new species of subsurface bacteria were described: the metal-reducer Geobacter daltonii, and the denitrifier Rhodanobacter denitrificans. (3) Strains isolated from the ORFRC show that Rhodanobacter species are well adapted to the contaminated subsurface. Strains 2APBS1 and 116-2 grow at high salt (3% NaCl), low pH (3.5) and tolerate high concentrations of nitrate (400mM) and nitrite (100mM). Strain 2APBS1 was demonstrated to grow at in situ acidic pHs down to 2.5. (4) R. denitrificans strain 2APBS1 is the first described Rhodanobacter species shown to denitrify. Nitrate is almost entirely converted to N2O, which may account for the large accumulation of N2O in the ORFRC subsurface. (5) G. daltonii, isolated from uranium- and hydrocarbon-contaminated subsurface sediments of the ORFRC, is the first organism from the subsurface clade of the genus Geobacter that is capable of growth on aromatic hydrocarbons. (6) High quality draft genome sequences and a complete eco-physiological description are completed for R. denitrificans strain 2APBS1 and G. daltonii strain FRC-32. (7) Given their demonstrated relevance to DOE remediation efforts and the availability of detailed genotypic/phenotypic characterization, Rhodanobacter denitrificans strain 2APBS1 and Geobacter daltonii strain FRC-32 represent ideal model organisms to provide a predictive understanding of subsurface microbial activity through metabolic modeling. Tasks II and III-Diversity and distribution of active anaerobes and Mechanisms linking electron transport and the fate of radionuclides: (1) Our study showed that members of genus Rhodanobacter and Geobacter are abundant and active in the uranium and nitrate contaminated subsurface. In the contaminant source zone of the Oak Ridge site, Rhodanobacter spp. are the predominant, active organisms detected (comprising 50% to 100% of rRNA detected). (2) We demonstrated for the first time that the function of microbial communities can be quantified in subsurface sediments using messenger RNA assays (molecular proxies) under in situ conditions. (3) Active Geobacteraceae were identified and phylogenetically characterized from the cDNA of messenger RNA extracted from ORFRC subsurface sediment cores. Multiple clone sequences were retrieved from G. uraniireducens, G. daltonii, and G. metallireducens. (4) Results show that Geobacter strain FRC-32 is capable of growth on benzoate, toluene and benzene as the electron donor, thereby providing evidence that this strain is physiologically distinct from other described members of the subsurface Geobacter clade. (5) Fe(III)-reducing bacteria transform structural Fe in clay minerals from their layer edges rather than from their basal surfaces.« less

Identifying riparian zones appropriate for installation of saturated buffers: A multi-watershed assessment

USDA-ARS?s Scientific Manuscript database

Saturated riparian buffers are a new type of conservation practice that divert a portion of subsurface tile drainage from discharge to surface water into distribution pipes that discharge tile water into riparian soils. This enables natural processes of biological uptake and denitrification to decre...

Pilot-scale vadose zone microbial biobarriers removed nitrate leaching from a cattle corral

USDA-ARS?s Scientific Manuscript database

activities that involve animal wastes can result in the contamination of subsurface soils by nitrates. In saturated or nearly saturated soils microbial biobarriers are a common method used to remove contaminants from water. This field study was conducted beneath a cattle pen in northeast Colorado a...

Quantitative imaging and in situ concentration measurements of quantum dot nanomaterials in variably saturated porous media

DOE PAGES

Uyuşur, Burcu; Snee, Preston T.; Li, Chunyan; ...

2016-01-01

Knowledge of the fate and transport of nanoparticles in the subsurface environment is limited, as techniques to monitor and visualize the transport and distribution of nanoparticles in porous media and measure their in situ concentrations are lacking. To address these issues, we have developed a light transmission and fluorescence method to visualize and measure in situ concentrations of quantum dot (QD) nanoparticles in variably saturated environments. Calibration cells filled with sand as porous medium and various known water saturation levels and QD concentrations were prepared. By measuring the intensity of the light transmitted through porous media exposed to fluorescent lightmore » and by measuring the hue of the light emitted by the QDs under UV light exposure, we obtained simultaneously in situ measurements of water saturation and QD nanoparticle concentrations with high spatial and temporal resolutions. Water saturation was directly proportional to the light intensity. A linear relationship was observed between hue-intensity ratio values and QD concentrations for constant water saturation levels. Lastly, the advantages and limitations of the light transmission and fluorescence method as well as its implications for visualizing and measuring in situ concentrations of QDs nanoparticles in the subsurface environment are discussed.« less

Microbial abundance in the deep subsurface of the Chesapeake Bay impact crater: Relationship to lithology and impact processes

USGS Publications Warehouse

Cockell, Charles S.; Gronstal, Aaron L.; Voytek, Mary A.; Kirshtein, Julie D.; Finster, Kai; Sanford, Ward E.; Glamoclija, Mihaela; Gohn, Gregroy S.; Powars, David S.; Horton, J. Wright

2009-01-01

Asteroid and comet impact events are known to cause profound disruption to surface ecosystems. The aseptic collection of samples throughout a 1.76-km-deep set of cores recovered from the deep subsurface of the Chesapeake Bay impact structure has allowed the study of the subsurface biosphere in a region disrupted by an impactor. Microbiological enumerations suggest the presence of three major microbiological zones. The upper zone (127–867 m) is characterized by a logarithmic decline in microbial abundance from the surface through the postimpact section of Miocene to Upper Eocene marine sediments and across the transition into the upper layers of the impact tsunami resurge sediments and sediment megablocks. In the middle zone (867–1397 m) microbial abundances are below detection. This zone is predominantly quartz sand, primarily composed of boulders and blocks, and it may have been mostly sterilized by the thermal pulse delivered during impact. No samples were collected from the large granite block (1096–1371 m). The lowest zone (below 1397 m) of increasing microbial abundance coincides with a region of heavily impact-fractured, hydraulically conductive suevite and fractured schist. These zones correspond to lithologies influenced by impact processes. Our results yield insights into the influence of impacts on the deep subsurface biosphere.

Marine Subsurface Microbial Community Shifts Across a Hydrothermal Gradient in Okinawa Trough Sediments

PubMed Central

2016-01-01

Sediments within the Okinawa back-arc basin overlay a subsurface hydrothermal network, creating intense temperature gradients with sediment depth and potential limits for microbial diversity. We investigated taxonomic changes across 45 m of recovered core with a temperature gradient of 3°C/m from the dynamic Iheya North Hydrothermal System. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay at 10 meters below seafloor (mbsf). Here, we present taxonomic results from an analysis of the 16S rRNA gene that support a conceptual model in which common marine subsurface taxa persist into the subsurface, while high temperature adapted archaeal taxa show localized peaks in abundances in the hydrothermal clay horizons. Specifically, the bacterial phylum Chloroflexi accounts for a major proportion of the total microbial community within the upper 10 mbsf, whereas high temperature archaea (Terrestrial Hot Spring Crenarchaeotic Group and methanotrophic archaea) appear in varying local abundances in deeper, hydrothermal clay horizons with higher in situ temperatures (up to 55°C, 15 mbsf). In addition, geochemical evidence suggests that methanotrophy may be occurring in various horizons. There is also relict DNA (i.e., DNA preserved after cell death) that persists in horizons where the conditions suitable for microbial communities have ceased. PMID:28096736

Colloid-facilitated transport of cesium in variably saturated Hanford sediments.

PubMed

Chen, Gang; Flury, Markus; Harsh, James B; Lichtner, Peter C

2005-05-15

Radioactive 137Cs has leaked from underground waste tanks into the vadose zone at the Hanford Reservation in south-central Washington State. There is concern that 137Cs, currently located in the vadose zone, can reach the groundwater. In this study, we investigated whether, and to what extent, colloidal particles can facilitate the transport of 137Cs at Hanford. We used colloidal materials isolated from Hanford sediments. Transport experiments were conducted under variably saturated, steady-state flow conditions in repacked, 20 cm long Hanford sediment columns, with effective water saturations ranging from 0.2 to 1.0. Cesium, pre-associated with colloids, was stripped off during transport through the sediments. The higher the flow rates, the less Cs was stripped off, indicating in part that Cs desorption from carrying colloids was a residence-time-dependent process. Depending on the flow rate, up to 70% of the initially sorbed Cs desorbed from colloidal carriers and was captured in the stationary sediments. Less Cs was stripped off colloids under unsaturated than under saturated flow conditions at similar flow rates. This phenomenon was likely due to the reduced availability of sorption sites for Cs on the sediments as the water content decreased and water flow was divided between mobile and immobile regions.

A Review of distribution and quantity of lingering subsurface oil from the Exxon Valdez Oil Spill

NASA Astrophysics Data System (ADS)

Nixon, Zachary; Michel, Jacqueline

2018-01-01

Remaining lingering subsurface oil residues from the Exxon Valdez oil spill (EVOS) are, at present, patchily distributed across the geologically complex and spatially extensive shorelines of Prince William Sound and the Gulf of Alaska. We review and synthesize previous literature describing the causal geomorphic and physical mechanisms for persistence of oil in the intertidal subsurface sediments of these areas. We also summarize previous sampling and modeling efforts, and refine previously presented models with additional data to characterize the present-day linear and areal spatial extent, and quantity of lingering subsurface oil. In the weeks after the spill in March of 1989, approximately 17,750 t of oil were stranded along impacted shorelines, and by October of 1992, only 2% of the mass of spilled oil was estimated to remain in intertidal areas. We estimate that lingering subsurface residues, generally between 5 and 20 cm thick and sequestered below 10-20 cm of clean sediment, are present over 30 ha of intertidal area, along 11.4 km of shoreline, and represent approximately 227 t or 0.6% of the total mass of spilled oil. These residues are typically located in finer-grained sand and gravel sediments, often under an armor of cobble- or boulder-sized clasts, in areas with limited groundwater flow and porosity. Persistence of these residues is correlated with heavy initial oil loading together with localized sheltering from physical disturbance such as wave energy within the beach face. While no longer generally bioavailable and increasingly chemically weathered, present removal rates for these remaining subsurface oil residues have slowed to nearly zero. The only remaining plausible removal mechanisms will operate over time scales of decades.

Volume change associated with formation and dissociation of hydrate in sediment

USGS Publications Warehouse

Ruppel, Carolyn D.; Lee, J.Y.; Santamarina, J. Carlos

2017-01-01

Gas hydrate formation and dissociation in sediments are accompanied by changes in the bulk volume of the sediment and can lead to changes in sediment properties, loss of integrity for boreholes, and possibly regional subsidence of the ground surface over areas where methane might be produced from gas hydrate in the future. Experiments on sand, silts, and clay subject to different effective stress and containing different saturations of hydrate formed from dissolved phase tetrahydrofuran are used to systematically investigate the impact of gas hydrate formation and dissociation on bulk sediment volume. Volume changes in low specific surface sediments (i.e., having a rigid sediment skeleton like sand) are much lower than those measured in high specific surface sediments (e.g., clay). Early hydrate formation is accompanied by contraction for all soils and most stress states in part because growing gas hydrate crystals buckle skeletal force chains. Dilation can occur at high hydrate saturations. Hydrate dissociation under drained, zero lateral strain conditions is always associated with some contraction, regardless of soil type, effective stress level, or hydrate saturation. Changes in void ratio during formation-dissociation decrease at high effective stress levels. The volumetric strain during dissociation under zero lateral strain scales with hydrate saturation and sediment compressibility. The volumetric strain during dissociation under high shear is a function of the initial volume average void ratio and the stress-dependent critical state void ratio of the sediment. Other contributions to volume reduction upon hydrate dissociation are related to segregated hydrate in lenses and nodules. For natural gas hydrates, some conditions (e.g., gas production driven by depressurization) might contribute to additional volume reduction by increasing the effective stress.

Marine Subsurface Microbial Communities Across a Hydrothermal Gradient in Okinawa Trough Sediments

NASA Astrophysics Data System (ADS)

Brandt, L. D.; Hser Wah Saw, J.; Ettema, T.; House, C. H.

2015-12-01

IODP Expedition 331 to the Okinawa backarc basin provided an opportunity to study the microbial stratigraphy within the sediments surrounding a hydrothermal vent. The Okinawa backarc basin is a sedimented region of the seafloor located on a continental margin, and also hosts a hydrothermal network within the subsurface. Site C0014 within the Iheya North hydrothermal field is located 450 m east of the active vent and has a surface temperature of 5°C with no evidence of hydrothermal alteration within the top 10 meters below sea floor (mbsf). Temperature increases with depth at an estimated rate of 3°C/m and transitions from non-hydrothermal margin sediments to a hydrothermally altered regime below 10 mbsf. In this study, we utilized deep 16S rRNA sequencing of DNA from IODP Expedition 331 Site C0014 sediment horizons in order to assess diversity throughout the sediment column as well as determine the potential limits of the biosphere. Analysis of the amplicon data shows a shift over 15 mbsf from a heterogeneous community of cosmopolitan marine subsurface taxa toward an archaeal-dominated community in the deepest horizons of the predicted biosphere. Notably, the phylum Chloroflexi represents a substantial taxon through most horizons, where it appears to be replaced below 10 mbsf by punctuations of thermophilic and methanotrophic Archaea and Miscellaneous Crenarchaeotic Group abundances. DNA from the aforementioned transition horizons was further analyzed using metagenomic sequencing. Preliminary taxonomic analysis of the metagenomic data agrees well with amplicon data in capturing the shift in relative abundance of Archaea increasing with depth. Additionally, reverse gyrase, a gene found exclusively in hyperthermophilic microorganisms, was recovered only in the metagenome of the deepest horizon. A BLAST search of this protein sequence against the GenBank non-redudnant protein database produced top hits with reverse gyrase from Thermococcus and Pyrococcus, which are known thermophiles. Up until now, thermophiles and hyperthermophiles have been studied in cultured hydrothermal vent fluid samples, or have been identified from 16S rRNA taxonomic analyses. These recovered genes provide direct evidence for a pervasive subsurface hyperthermophilic biosphere in off-axis hydrothermal sediments.

Use of the [(14)C]leucine incorporation technique to measure bacterial production in river sediments and the epiphyton.

PubMed

Fischer, H; Pusch, M

1999-10-01

Bacterial production is a key parameter for the understanding of carbon cycling in aquatic ecosystems, yet it remains difficult to measure in many aquatic habitats. We therefore tested the applicability of the [(14)C]leucine incorporation technique for the measurement of bulk bacterial production in various habitats of a lowland river ecosystem. To evaluate the method, we determined (i) extraction efficiencies of bacterial protein from the sediments, (ii) substrate saturation of leucine in sediments, the biofilms on aquatic plants (epiphyton), and the pelagic zone, (iii) bacterial activities at different leucine concentrations, (iv) specificity of leucine uptake by bacteria, and (v) the effect of the incubation technique (perfused-core incubation versus slurry incubation) on leucine incorporation into protein. Bacterial protein was best extracted from sediments and precipitated by hot trichloroacetic acid treatment following ultrasonication. For epiphyton, an alkaline-extraction procedure was most efficient. Leucine incorporation saturation occurred at 1 microM in epiphyton and 100 nM in the pelagic zone. Saturation curves in sediments were difficult to model but showed the first level of leucine saturation at 50 microM. Increased uptake at higher leucine concentrations could be partly attributed to eukaryotes. Addition of micromolar concentrations of leucine did not enhance bacterial electron transport activity or DNA replication activity. Similar rates of leucine incorporation into protein calculated for whole sediment cores were observed after slurry and perfused-core incubations, but the rates exhibited strong vertical gradients after the core incubation. We conclude that the leucine incorporation method can measure bacterial production in a wide range of aquatic habitats, including fluvial sediments, if substrate saturation and isotope dilution are determined.

Use of the [14C]Leucine Incorporation Technique To Measure Bacterial Production in River Sediments and the Epiphyton

PubMed Central

Fischer, Helmut; Pusch, Martin

1999-01-01

Bacterial production is a key parameter for the understanding of carbon cycling in aquatic ecosystems, yet it remains difficult to measure in many aquatic habitats. We therefore tested the applicability of the [14C]leucine incorporation technique for the measurement of bulk bacterial production in various habitats of a lowland river ecosystem. To evaluate the method, we determined (i) extraction efficiencies of bacterial protein from the sediments, (ii) substrate saturation of leucine in sediments, the biofilms on aquatic plants (epiphyton), and the pelagic zone, (iii) bacterial activities at different leucine concentrations, (iv) specificity of leucine uptake by bacteria, and (v) the effect of the incubation technique (perfused-core incubation versus slurry incubation) on leucine incorporation into protein. Bacterial protein was best extracted from sediments and precipitated by hot trichloroacetic acid treatment following ultrasonication. For epiphyton, an alkaline-extraction procedure was most efficient. Leucine incorporation saturation occurred at 1 μM in epiphyton and 100 nM in the pelagic zone. Saturation curves in sediments were difficult to model but showed the first level of leucine saturation at 50 μM. Increased uptake at higher leucine concentrations could be partly attributed to eukaryotes. Addition of micromolar concentrations of leucine did not enhance bacterial electron transport activity or DNA replication activity. Similar rates of leucine incorporation into protein calculated for whole sediment cores were observed after slurry and perfused-core incubations, but the rates exhibited strong vertical gradients after the core incubation. We conclude that the leucine incorporation method can measure bacterial production in a wide range of aquatic habitats, including fluvial sediments, if substrate saturation and isotope dilution are determined. PMID:10508068

Uncertainty in the modelling of spatial and temporal patterns of shallow groundwater flow paths: The role of geological and hydrological site information

NASA Astrophysics Data System (ADS)

Woodward, Simon J. R.; Wöhling, Thomas; Stenger, Roland

2016-03-01

Understanding the hydrological and hydrogeochemical responses of hillslopes and other small scale groundwater systems requires mapping the velocity and direction of groundwater flow relative to the controlling subsurface material features. Since point observations of subsurface materials and groundwater head are often the basis for modelling these complex, dynamic, three-dimensional systems, considerable uncertainties are inevitable, but are rarely assessed. This study explored whether piezometric head data measured at high spatial and temporal resolution over six years at a hillslope research site provided sufficient information to determine the flow paths that transfer nitrate leached from the soil zone through the shallow saturated zone into a nearby wetland and stream. Transient groundwater flow paths were modelled using MODFLOW and MODPATH, with spatial patterns of hydraulic conductivity in the three material layers at the site being estimated by regularised pilot point calibration using PEST, constrained by slug test estimates of saturated hydraulic conductivity at several locations. Subsequent Null Space Monte Carlo uncertainty analysis showed that this data was not sufficient to definitively determine the spatial pattern of hydraulic conductivity at the site, although modelled water table dynamics matched the measured heads with acceptable accuracy in space and time. Particle tracking analysis predicted that the saturated flow direction was similar throughout the year as the water table rose and fell, but was not aligned with either the ground surface or subsurface material contours; indeed the subsurface material layers, having relatively similar hydraulic properties, appeared to have little effect on saturated water flow at the site. Flow path uncertainty analysis showed that, while accurate flow path direction or velocity could not be determined on the basis of the available head and slug test data alone, the origin of well water samples relative to the material layers and site contour could still be broadly deduced. This study highlights both the challenge of collecting suitably informative field data with which to characterise subsurface hydrology, and the power of modern calibration and uncertainty modelling techniques to assess flow path uncertainty in hillslopes and other small scale systems.

Tillage impact on herbicide loss by surface runoff and lateral subsurface flow

USDA-ARS?s Scientific Manuscript database

There is worldwide interest in conservation tillage practices because they can reduce surface runoff, agrichemical, and sediment loss from farm fields. Since these practices typically increase infiltration, their use may increase subsurface transport of water-soluble contaminants. Thus, to assess lo...

Microbial Biogeography on the Legacies of Historical Events in the Arctic Subsurface Sediments

NASA Astrophysics Data System (ADS)

Han, Dukki; Nam, Seung-Il; Hur, Hor-Gil

2017-04-01

The Arctic marine environment consists of various microbial habitats. The niche preference of microbial assemblages in the Arctic Ocean has been surveyed with the modern environmental change by oceanographic traits such as sea-ice dynamics, current circulation, and sedimentation. The North Pacific inflow from the shallow and narrow Bering Strait is highly susceptible to sea-level fluctuations, and thus the water mass exchange mediated by the history of sea-ice between the North Pacific and the Chukchi Sea in the Arctic Ocean. Over geological timescale, the climate change may provide putative evidences for ecological niche for the Arctic microbial assemblages as well as geological records in response to the paleoclimate change. In the present study, the multidisciplinary approach, based on microbiology, geology, and geochemistry, was applied to survey the microbial assemblages in the Arctic subsurface sediments and help further integrate the microbial biogeography and biogeochemical patterns in the Arctic subsurface biosphere. Our results describe microbial assemblages with high-resolution paleoceanographic records in the Chukchi Sea sediment core (ARA02B/01A-GC; 5.4 mbsf) to show the processes that drive microbial biogeographic patterns in the Arctic subsurface sediments. We found microbial habitat preferences closely linked to Holocene paleoclimate records as well as geological, geochemical, and microbiological evidence for the inference of the sulphate-methane transition zone (SMTZ) in the Chukchi Sea. Especially, the vertically distributed predominant populations of Gammaproteobacteria and Marine Group II Euryarchaeota in the ARA02B/01A-GC consistent with the patterns of the known global SMTZs and Holocene sedimentary records, suggesting that in-depth microbiological profiles integrated with geological records may be indirectly useful for reconstructing Arctic paleoclimate changes. In the earliest phase of Mid Holocene in the ARA02B/01A-GC with concentrated crenarchaeol (a unique biomarker for Marine Group I Thaumarchaea), the most abundant archaeal population was Marine Group II Euryarchaeota rather than Marine Group I Thaumarchaea, suggesting that the interpretation of archaeal tetraether lipids in subsurface sediments needs careful consideration for paleoceanography. In conclusion, our findings have important implications for the availability of microbial biogeography in the sedimentary record. The present study offers a deeper understanding of the legacies of historical events during the Holocene and implies that the survey of microbial biogeography may be an appropriate tool to monitor potential effects from the climate change in the Arctic Ocean.

SORPTION OF NONIONIC SURFACTANT OLIGOMERS TO SEDIMENT AND PCE DNAPL: EFFECTS ON PCE DISTRIBUTION BETWEEN WATER AND SEDIMENT. (R826650)

EPA Science Inventory

Introduction of surfactant mixtures to the subsurface for the purpose of
surfactant-enhanced aquifer remediation requires consideration of the effects of
surfactant sorption to sediment and nonaqueous phase liquids. These effects
include alteration of the solubiliz...

Effective diffusion coefficients of DNAPL waste components in saturated low permeability soil materials

NASA Astrophysics Data System (ADS)

Ayral-Cinar, Derya; Demond, Avery H.

2017-12-01

Diffusion is regarded as the dominant transport mechanism into and out of low permeable subsurface lenses and layers in the subsurface. But, some reports of mass storage in such zones are higher than what might be attributable to diffusion, based on estimated diffusion coefficients. Despite the importance of diffusion to efforts to estimate the quantity of residual contamination in the subsurface, relatively few studies present measured diffusion coefficients of organic solutes in saturated low permeability soils. This study reports the diffusion coefficients of a trichloroethylene (TCE), and an anionic surfactant, Aerosol OT (AOT), in water-saturated silt and a silt-montmorillonite (25:75) mixture, obtained using steady-state experiments. The relative diffusivity ranged from 0.11 to 0.17 for all three compounds for the silt and the silt-clay mixture that was allowed to expand. In the case in which the swelling was constrained, the relative diffusivity was about 0.07. In addition, the relative diffusivity of 13C-labeled TCE through a water saturated silt-clay mixture that had contacted a field dense non-aqueous phase liquid (DNAPL) for 18 months was measured and equaled 0.001. These experimental results were compared with the estimates generated using common correlations, and it was found that, in all cases, the measured diffusion coefficients were significantly lower than the estimated. Thus, the discrepancy between mass accumulations observed in the field and the mass storage that can attributable to diffusion may be greater than previously believed.

Electrokinetic Transduction of Acoustic Waves In Ocean Sediments

DTIC Science & Technology

2002-09-30

acoustic —motion in ocean sediments. The Biot theory of poroelastic media captures much of the sediment physics left out by other models [2]. It fits...in subsurface acoustical imaging, Mine Counter- Measures, and Anti-Submarine Warfare. To obtain essential experimental data to support the modeling ...Electrokinetic Transduction of Acoustic Waves In Ocean Sediments Gareth I. Block Applied Research Laboratories, U.T. Austin P.O. Box 8029

Immobilization of U(VI) from Oxic Groundwater by Hanford 300 Area Sediments and Effects of Columbia River Water

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahmed, B.; Cao, Bin; Mishra, Bhoopesh

2012-09-23

Regions within the U.S. Department of Energy Hanford 300 Area (300 A) site experience periodic hydrologic influences from the nearby Columbia River as a result of changing river stage, which causes changes in groundwater elevation, flow direction and water chemistry. An important question is the extent to which the mixing of Columbia River water and groundwater impacts the speciation and mobility of uranium (U). In this study, we designed experiments to mimic interactions among U, oxic groundwater or Columbia River water, and 300 A sediments in the subsurface environment of Hanford 300 A. The goals were to investigate mechanisms of:more » 1) U immobilization in 300 A sediments under bulk oxic conditions and 2) U remobilization from U-immobilized 300 A sediments exposed to oxic Columbia River water. Initially, 300 A sediments in column reactors were fed with U(VI)-containing oxic 1) synthetic groundwater (SGW), 2) organic-amended SGW (OA-SGW), and 3) de-ionized (DI) water to investigate U immobilization processes. After that, the sediments were exposed to oxic Columbia River water for U remobilization studies. The results reveal that U was immobilized by 300 A sediments predominantly through reduction (80-85%) when the column reactor was fed with oxic OA-SGW. However, U was immobilized by 300 A sediments through adsorption (100%) when the column reactors were fed with oxic SGW or DI water. The reduced U in the 300 A sediments fed with OA-SGW was relatively resistant to remobilization by oxic Columbia River water. Oxic Columbia River water resulted in U remobilization (~7%) through desorption, and most of the U that remained in the 300 A sediments fed with OA-SGW (~93%) was in the form of uraninite nanoparticles. These results reveal that: 1) the reductive immobilization of U through OA-SGW stimulation of indigenous 300 A sediment microorganisms may be viable in the relatively oxic Hanford 300 A subsurface environments and 2) with the intrusion of Columbia River water, desorption may be the primary process resulting in U remobilization from OA-SGW-stimulated 300 A sediments at the subsurface of the Hanford 300 A site.« less

Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments

USGS Publications Warehouse

Krumholz, Lee R.; Elias, Dwayne A.; Suflita, Joseph M.

2003-01-01

We investigated the impact of sulfate-reduction on immobilization of metals in subsurface aquifers. Co 2+ was used as a model for heavy metals. Factors limiting sulfate-reduction dependent Co 2+ immobilization were tested on pure cultures of sulfate-reducing bacteria, and in sediment columns from a landfill leachate contaminated aquifer. In the presence of 1 mM Co 2+ , the growth of pure cultures of sulfate-reducing bacteria was not impacted. Cultures of Desulfovibrio desulfuricans, Desulfotomaculum gibsoniae , and Desulfomicrobium hypogeia removed greater than 99.99% of the soluble Co 2+ when CoCl 2 was used with no chelators. The above cultures and Desulfoarcula baarsi removed 98-99.94% of the soluble Co(II) when the metal was complexed with the model ligand nitrilotriacetate (Co-NTA). Factors controlling the rate of sulfate-reduction based Co 2+ precipitation were investigated in sediment-cobalt mixtures. Several electron donors were tested and all but toluene accelerated soluble Co 2+ loss. Ethanol and formate showed the greatest stimulation. All complex nitrogen sources tested slowed and decreased the extent of Co 2+ removal from solution relative to formate-amended sediment incubations. A range of pH values were tested (6.35-7.81), with the more alkaline incubations exhibiting the largest precipitation of Co 2+ . The immobilization of Co 2+ in sediments was also investigated with cores to monitor the flow of Co 2+ through undisturbed sediments. An increase in the amount of Co 2+ immobilized as CoS was observed as sulfate reduction activity was stimulated in flow through columns. Both pure culture and sediment incubation data indicate that stimulation of sulfate reduction is a viable strategy in the immobilization of contaminating metals in subsurface systems.

Risk assessment of trace metals in an extreme environment sediment: shallow, hypersaline, alkaline, and industrial Lake Acıgöl, Denizli, Turkey.

PubMed

Budakoglu, Murat; Karaman, Muhittin; Kumral, Mustafa; Zeytuncu, Bihter; Doner, Zeynep; Yildirim, Demet Kiran; Taşdelen, Suat; Bülbül, Ali; Gumus, Lokman

2018-02-23

The major and trace element component of 48 recent sediment samples in three distinct intervals (0-10, 10-20, and 20-30 cm) from Lake Acıgöl is described to present the current contamination levels and grift structure of detrital and evaporate mineral patterns of these sediments in this extreme saline environment. The spatial and vertical concentrations of major oxides were not uniform in the each subsurface interval. However, similar spatial distribution patterns were observed for some major element couples, due mainly to the detrital and evaporate origin of these elements. A sequential extraction procedure including five distinct steps was also performed to determine the different bonds of trace elements in the < 60-μ particulate size of recent sediments. Eleven trace elements (Ni, Fe, Cd, Pb, Cu, Zn, As, Co, Cr, Al and Mn) in nine surface and subsurface sediment samples were analyzed with chemical partitioning procedures to determine the trace element percentage loads in these different sequential extraction phases. The obtained accuracy values via comparison of the bulk trace metal loads with the total loads of five extraction steps were satisfying for the Ni, Fe, Cd, Zn, and Co. While, bulk analysis results of the Cu, Ni, and V elements have good correlation with total organic matter, organic fraction of sequential extraction characterized by Cu, As, Cd, and Pb. Shallow Lake Acıgöl sediment is characteristic with two different redox layer a) oxic upper level sediments, where trace metals are mobilized, b) reduced subsurface level, where the trace metals are precipitated.

TOUGHREACT: a new code of the TOUGH Family for Non-Isothermal multiphase reactive geochemical transport in variably saturated geologic media

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Tianfu; Sonnenthal, Eric; Spycher, Nicolas

Coupled modeling of subsurface multiphase fluid and heat flow, solute transport and chemical reactions can be used for the assessment of acid mine drainage remediation, waste disposal sites, hydrothermal convection, contaminant transport, and groundwater quality. We have developed a comprehensive numerical simulator, TOUGHREACT, which considers non-isothermal multi-component chemical transport in both liquid and gas phases. A wide range of subsurface thermo-physical-chemical processes is considered under various thermohydrological and geochemical conditions of pressure, temperature, water saturation, and ionic strength. The code can be applied to one-, two- or three-dimensional porous and fractured media with physical and chemical heterogeneity.

Importance of Wetlands to Streamflow Generation

Treesearch

E. S. Verry; R. K. Kolka

2003-01-01

Hewlett (1961) proposed the variable-source-area concept of streamflow origin in the mountains of North Carolina suggesting streamflow was produced from water leaving saturated areas near the channel. Dunne and Black confirmed this concept on the Sleepers River watershed in Vermont (1970). Areas near the river were saturated by subsurface or interflow from adjacent...

Subsurface Nitrogen-Cycling Microbial Communities at Uranium Contaminated Sites in the Colorado River Basin

NASA Astrophysics Data System (ADS)

Cardarelli, E.; Bargar, J.; Williams, K. H.; Dam, W. L.; Francis, C.

2015-12-01

Throughout the Colorado River Basin (CRB), uranium (U) persists as a relic contaminant of former ore processing activities. Elevated solid-phase U levels exist in fine-grained, naturally-reduced zone (NRZ) sediments intermittently found within the subsurface floodplain alluvium of the following Department of Energy-Legacy Management sites: Rifle, CO; Naturita, CO; and Grand Junction, CO. Coupled with groundwater fluctuations that alter the subsurface redox conditions, previous evidence from Rifle, CO suggests this resupply of U may be controlled by microbially-produced nitrite and nitrate. Nitrification, the two-step process of archaeal and bacterial ammonia-oxidation followed by bacterial nitrite oxidation, generates nitrate under oxic conditions. Our hypothesis is that when elevated groundwater levels recede and the subsurface system becomes anoxic, the nitrate diffuses into the reduced interiors of the NRZ and stimulates denitrification, the stepwise anaerobic reduction of nitrate/nitrite to dinitrogen gas. Denitrification may then be coupled to the oxidation of sediment-bound U(IV) forming mobile U(VI), allowing it to resupply U into local groundwater supplies. A key step in substantiating this hypothesis is to demonstrate the presence of nitrogen-cycling organisms in U-contaminated, NRZ sediments from the upper CRB. Here we investigate how the diversity and abundances of nitrifying and denitrifying microbial populations change throughout the NRZs of the subsurface by using functional gene markers for ammonia-oxidation (amoA, encoding the α-subunit of ammonia monooxygenase) and denitrification (nirK, nirS, encoding nitrite reductase). Microbial diversity has been assessed via clone libraries, while abundances have been determined through quantitative polymerase chain reaction (qPCR), elucidating how relative numbers of nitrifiers (amoA) and denitrifiers (nirK, nirS) vary with depth, vary with location, and relate to uranium release within NRZs in sediment cores spanning the upper CRB. Early findings from Rifle, CO indicate elevated abundances of ammonia-oxidizers seem to correlate with elevated uranium concentrations emphasizing the critical need to understand how nitrogen-cycling organisms influence subsurface U redox chemistry and mobility.

Influence of low oxygen tensions and sorption to sediment black carbon on biodegradation of pyrene.

PubMed

Ortega-Calvo, José-Julio; Gschwend, Philip M

2010-07-01

Sorption to sediment black carbon (BC) may limit the aerobic biodegradation of polycyclic aromatic hydrocarbons (PAHs) in resuspension events and intact sediment beds. We examined this hypothesis experimentally under conditions that were realistic in terms of oxygen concentrations and BC content. A new method, based on synchronous fluorescence observations of (14)C-pyrene, was developed for continuously measuring the uptake of dissolved pyrene by Mycobacterium gilvum VM552, a representative degrader of PAHs. The effect of oxygen and pyrene concentrations on pyrene uptake followed Michaelis-Menten kinetics, resulting in a dissolved oxygen half-saturation constant (K(om)) of 14.1 microM and a dissolved pyrene half-saturation constant (K(pm)) of 6 nM. The fluorescence of (14)C-pyrene in air-saturated suspensions of sediments and induced cells followed time courses that reflected simultaneous desorption and biodegradation of pyrene, ultimately causing a quasi-steady-state concentration of dissolved pyrene balancing desorptive inputs and biodegradation removals. The increasing concentrations of (14)CO(2) in these suspensions, as determined with liquid scintillation, evidenced the strong impact of sorption to BC-rich sediments on the biodegradation rate. Using the best-fit parameter values, we integrated oxygen and sorption effects and showed that oxygen tensions far below saturation levels in water are sufficient to enable significant decreases in the steady-state concentrations of aqueous-phase pyrene. These findings may be relevant for bioaccumulation scenarios that consider the effect of sediment resuspension events on exposure to water column and sediment pore water, as well as the direct uptake of PAHs from sediments.

Parametric study of the physical properties of hydrate-bearing sand, silt, and clay sediments: 2. Small-strain mechanical properties

USGS Publications Warehouse

Lee, J.Y.; Francisca, F.M.; Santamarina, J.C.; Ruppel, C.

2010-01-01

The small-strain mechanical properties (e.g., seismic velocities) of hydrate-bearing sediments measured under laboratory conditions provide reference values for calibration of logging and seismic exploration results acquired in hydrate-bearing formations. Instrumented cells were designed for measuring the compressional (P) and shear (S) velocities of sand, silts, and clay with and without hydrate and subject to vertical effective stresses of 0.01 to 2 MPa. Tetrahydrofuran (THF), which is fully miscible in water, was used as the hydrate former to permit close control over the hydrate saturation Shyd and to produce hydrate from dissolved phase, as methane hydrate forms in most natural marine settings. The results demonstrate that laboratory hydrate formation technique controls the pattern of P and S velocity changes with increasing Shyd and that the small-strain properties of hydrate-bearing sediments are governed by effective stress, δ'v and sediment specific surface. The S velocity increases with hydrate saturation owing to an increase in skeletal shear stiffness, particularly when hydrate saturation exceeds Shyd≈ 0.4. At very high hydrate saturations, the small strain shear stiffness is determined by the presence of hydrates and becomes insensitive to changes in effective stress. The P velocity increases with hydrate saturation due to the increases in both the shear modulus of the skeleton and the bulk modulus of pore-filling phases during fluid-to-hydrate conversion. Small-strain Poisson's ratio varies from 0.5 in soft sediments lacking hydrates to 0.25 in stiff sediments (i.e., subject to high vertical effective stress or having high Shyd). At Shyd ≥ 0.5, hydrate hinders expansion and the loss of sediment stiffness during reduction of vertical effective stress, meaning that hydrate-rich natural sediments obtained through pressure coring should retain their in situ fabric for some time after core retrieval if the cores are maintained within the hydrate stability field.

Predicting subsurface uranium transport: Mechanistic modeling constrained by experimental data

NASA Astrophysics Data System (ADS)

Ottman, Michael; Schenkeveld, Walter D. C.; Kraemer, Stephan

2017-04-01

Depleted uranium (DU) munitions and their widespread use throughout conflict zones around the world pose a persistent health threat to the inhabitants of those areas long after the conclusion of active combat. However, little emphasis has been put on developing a comprehensive, quantitative tool for use in remediation and hazard avoidance planning in a wide range of environments. In this context, we report experimental data on U interaction with soils and sediments. Here, we strive to improve existing risk assessment modeling paradigms by incorporating a variety of experimental data into a mechanistic U transport model for subsurface environments. 20 different soils and sediments from a variety of environments were chosen to represent a range of geochemical parameters that are relevant to U transport. The parameters included pH, organic matter content, CaCO3, Fe content and speciation, and clay content. pH ranged from 3 to 10, organic matter content from 6 to 120 g kg-1, CaCO3 from 0 to 700 g kg-1, amorphous Fe content from 0.3 to 6 g kg-1 and clay content from 4 to 580 g kg-1. Sorption experiments were then performed, and linear isotherms were constructed. Sorption experiment results show that among separate sets of sediments and soils, there is an inverse correlation between both soil pH and CaCO¬3 concentration relative to U sorptive affinity. The geological materials with the highest and lowest sorptive affinities for U differed in CaCO3 and organic matter concentrations, as well as clay content and pH. In a further step, we are testing if transport behavior in saturated porous media can be predicted based on adsorption isotherms and generic geochemical parameters, and comparing these modeling predictions with the results from column experiments. The comparison of these two data sets will examine if U transport can be effectively predicted from reactive transport modeling that incorporates the generic geochemical parameters. This work will serve to show whether a more mechanistic approach offers an improvement over statistical regression-based risk assessment models.

Microbial Community Responses to Organophosphate Substrate Additions in Contaminated Subsurface Sediments

PubMed Central

Martinez, Robert J.; Wu, Cindy H.; Beazley, Melanie J.; Andersen, Gary L.; Conrad, Mark E.; Hazen, Terry C.; Taillefert, Martial; Sobecky, Patricia A.

2014-01-01

Background Radionuclide- and heavy metal-contaminated subsurface sediments remain a legacy of Cold War nuclear weapons research and recent nuclear power plant failures. Within such contaminated sediments, remediation activities are necessary to mitigate groundwater contamination. A promising approach makes use of extant microbial communities capable of hydrolyzing organophosphate substrates to promote mineralization of soluble contaminants within deep subsurface environments. Methodology/Principal Findings Uranium-contaminated sediments from the U.S. Department of Energy Oak Ridge Field Research Center (ORFRC) Area 2 site were used in slurry experiments to identify microbial communities involved in hydrolysis of 10 mM organophosphate amendments [i.e., glycerol-2-phosphate (G2P) or glycerol-3-phosphate (G3P)] in synthetic groundwater at pH 5.5 and pH 6.8. Following 36 day (G2P) and 20 day (G3P) amended treatments, maximum phosphate (PO4 3−) concentrations of 4.8 mM and 8.9 mM were measured, respectively. Use of the PhyloChip 16S rRNA microarray identified 2,120 archaeal and bacterial taxa representing 46 phyla, 66 classes, 110 orders, and 186 families among all treatments. Measures of archaeal and bacterial richness were lowest under G2P (pH 5.5) treatments and greatest with G3P (pH 6.8) treatments. Members of the phyla Crenarchaeota, Euryarchaeota, Bacteroidetes, and Proteobacteria demonstrated the greatest enrichment in response to organophosphate amendments and the OTUs that increased in relative abundance by 2-fold or greater accounted for 9%–50% and 3%–17% of total detected Archaea and Bacteria, respectively. Conclusions/Significance This work provided a characterization of the distinct ORFRC subsurface microbial communities that contributed to increased concentrations of extracellular phosphate via hydrolysis of organophosphate substrate amendments. Within subsurface environments that are not ideal for reductive precipitation of uranium, strategies that harness microbial phosphate metabolism to promote uranium phosphate precipitation could offer an alternative approach for in situ sequestration. PMID:24950228

A practical tool for estimating subsurface LNAPL distributions and transmissivity using current and historical fluid levels in groundwater wells: Effects of entrapped and residual LNAPL

NASA Astrophysics Data System (ADS)

Lenhard, R. J.; Rayner, J. L.; Davis, G. B.

2017-10-01

A model is presented to account for elevation-dependent residual and entrapped LNAPL above and below, respectively, the water-saturated zone when predicting subsurface LNAPL specific volume (fluid volume per unit area) and transmissivity from current and historic fluid levels in wells. Physically-based free, residual, and entrapped LNAPL saturation distributions and LNAPL relative permeabilities are integrated over a vertical slice of the subsurface to yield the LNAPL specific volumes and transmissivity. The model accounts for effects of fluctuating water tables. Hypothetical predictions are given for different porous media (loamy sand and clay loam), fluid levels in wells, and historic water-table fluctuations. It is shown the elevation range from the LNAPL-water interface in a well to the upper elevation where the free LNAPL saturation approaches zero is the same for a given LNAPL thickness in a well regardless of porous media type. Further, the LNAPL transmissivity is largely dependent on current fluid levels in wells and not historic levels. Results from the model can aid developing successful LNAPL remediation strategies and improving the design and operation of remedial activities. Results of the model also can aid in accessing the LNAPL recovery technology endpoint, based on the predicted transmissivity.

Deposition and deformation of stratified rocks in the northern Nia Mensa region of Valles Marineris, Mars

NASA Astrophysics Data System (ADS)

Okubo, C. H.

2016-12-01

Large-scale structural and geologic mapping based on HiRISE (High Resolution Imaging Science Experiment) digital elevation models reveals new details of the depositional environment for the stratified rocks in the northern Nia Mensa region of eastern Candor Chasma, Valles Marineris, Mars. The map area encompasses the contact between massive sedimentary rocks that comprise most of Nia Mensa and the stratified sedimentary and mass-wasting deposits exposed between Nia Mensa and the north wall of eastern Candor Chasma. The area contains a stratified fan-like deposit on the lower slopes of Nia Mensa. The strata within this deposit dip outward at < 10°, away from its morphologic apex, consistent with an origin as a depositional fan (rather than being carved into a fan shape by erosion). Whether this fan has a subaerial or submarine origin has not yet been determined. Additionally, the fan and surrounding stratified rocks exhibit evidence of soft-sediment deformation in the form of clastic dikes and contorted bedding, indicating that these deposits were water-saturated at the time of deformation. Finally, the northern section of the map area encompasses part of a fractured rise, and deposits interpreted as mud flows mantle the top of this rise. Inferred flow directions suggest that the mud erupted out of these fractures. These findings place constraints on the depositional environment of the local stratified bedrock. The presence of the fan deposit indicates that lateral transport was a component in the depositional history of these sediments. Therefore the sediments did not form entirely as a mantling deposit, such as air fall ash or sediments settled out of a water column. The soft-sediment deformation and subsurface mobilized sediments indicate that groundwater was present in the area after emplacement of the stratified deposits, but before its lithification. These findings point to a wet-playa to lacustrine depositional environment.

Teaching Hyporheic and Groundwater Flow Concepts Using an Interactive Computer Simulation

NASA Astrophysics Data System (ADS)

Stonedahl, S. H.; Stonedahl, F.

2016-12-01

We built an educational flow simulator with an interactive web-based interface that allows students to investigate the effects of arbitrary head functions on water flowing through various configurations of permeable/impermeable sediments. The domain consists of a 24 by 48 rectangular grid of sediments with no-flow bottom and side boundaries and a constant head surface water-groundwater (SWGW) interface boundary. The SWGW interface head function can be drawn freehand with the mouse or specified to be a step function, a sine curve, or a zig-zag function, where the amplitude and wavenumber parameters of the head functions are chosen by the user. The subsurface domain may be modified by drawing no-flow (impermeable) barriers in the sediment, changing any number of the 1152 grid cells into no flow cells. The program iteratively solves the Laplace equation to calculate head values at each grid cell within the sediment. Users can then start water particles along the SWGW interface and track their paths through the system to visualize the head-induced flow. Sediment cells can be color coded by head values or water speed. Exploring these systems with the simulator allows users to improve their understanding of the relationship between head and velocity as well as how the position of no-flow barriers impacts water flow in saturated sediments. These learning objectives are amenable to our target audience of undergraduate students, but younger (middle/high school) students may also be able to absorb key concepts by playing with the simulation. The structure of the simulation itself highlights the broader idea of simulation of natural processes through the discretization of continuous environments. The simulation was developed using the NetLogo platform and runs embedded in a webpage: http://susa.stonedahl.com/swgwsimulator. The simulation source code is available and can readily be modified by other educators (or students) to create additional features and options.

Accumulation of iron and arsenic in the Chandina alluvium of the lower delta plain, Southeastern Bangladesh

USGS Publications Warehouse

Zahid, A.; Hassan, M.Q.; Breit, G.N.; Balke, K.-D.; Flegr, M.

2009-01-01

Accumulations of iron, manganese, and arsenic occur in the Chandina alluvium of southeastern Bangladesh within 2.5 m of the ground surface. These distinctive orange-brown horizons are subhorizontal and consistently occur within 1 m of the contact of the aerated (yellow-brown) and water-saturated (gray) sediment. Ferric oxyhydroxide precipitates that define the horizons form by oxidation of reduced iron in pore waters near the top of the saturated zone when exposed to air in the unsaturated sediment. Hydrous Fe-oxide has a high specific surface area and thus a high adsorption capacity that absorbs the bulk of arsenic also present in the reduced pore water, resulting in accumulations containing as much as 280 ppm arsenic. The steep redox gradient that characterizes the transition of saturated and unsaturated sediment also favors accumulation of manganese oxides in the oxidized sediment. Anomalous concentrations of phosphate and molybdenum also detected in the ferric oxyhydroxide-enriched sediment are attributed to sorption processes. ?? Springer Science+Business Media B.V. 2008.

A porewater - based stable isotope approach for the investigation of subsurface hydrological processes

NASA Astrophysics Data System (ADS)

Garvelmann, J.; Külls, C.; Weiler, M.

2011-10-01

Predicting and understanding subsurface flowpaths is still a crucial issue in hydrological research. We present an experimental approach to reveal present and past subsurface flowpaths of water in the unsaturated and saturated zone. Two hillslopes in a humid moutainous catchment have been investigated. The H2O(liquid) - H2O(vapor) equilibration laser spectroscopy method was used to obtain high resolution δ2H vertical depth profiles of porewater at various points along a fall line of a pasture hillslope in the southern Black Forest, Germany. The Porewater Stable Isotope Profile (PSIP) approach was developed to use the integrated information of several vertical depth profiles of deuterium along two transects at the hillslopes. Different shapes of depth profiles were observed in relation to hillslope position. The statistical variability (inter-quartile range and standard deviation) of each profile was used to characterize different types of depth profiles. The profiles upslope or with a weak affinity for saturation as indicated by a low topographic wetness index preserve the isotopic input signal by precipitation with a distinct seasonal variability. These observations indicate mainly vertical movement of soil water in the upper part of the hillslope before sampling. The profiles downslope or at locations with a strong affinity for saturation do not show a similar seasonal isotopic signal. The input signal is erased in the foothills and a large proportion of pore water samples are close to the isotopic values of δ2H in stream water during base flow. Near the stream indications for efficient mixing of water from lateral subsurface flow paths with vertical percolation are found.

Dehalogenation Activities and Distribution of Reductive Dehalogenase Homologous Genes in Marine Subsurface Sediments▿ †

PubMed Central

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H.; Inagaki, Fumio

2009-01-01

Halogenated organic compounds serve as terminal electron acceptors for anaerobic respiration in a diverse range of microorganisms. Here, we report on the widespread distribution and diversity of reductive dehalogenase homologous (rdhA) genes in marine subsurface sediments. A total of 32 putative rdhA phylotypes were detected in sediments from the southeast Pacific off Peru, the eastern equatorial Pacific, the Juan de Fuca Ridge flank off Oregon, and the northwest Pacific off Japan, collected at a maximum depth of 358 m below the seafloor. In addition, significant dehalogenation activity involving 2,4,6-tribromophenol and trichloroethene was observed in sediment slurry from the Nankai Trough Forearc Basin. These results suggest that dehalorespiration is an important energy-yielding pathway in the subseafloor microbial ecosystem. PMID:19749069

Deep subsurface microbial processes

USGS Publications Warehouse

Lovley, D.R.; Chapelle, F.H.

1995-01-01

Information on the microbiology of the deep subsurface is necessary in order to understand the factors controlling the rate and extent of the microbially catalyzed redox reactions that influence the geophysical properties of these environments. Furthermore, there is an increasing threat that deep aquifers, an important drinking water resource, may be contaminated by man's activities, and there is a need to predict the extent to which microbial activity may remediate such contamination. Metabolically active microorganisms can be recovered from a diversity of deep subsurface environments. The available evidence suggests that these microorganisms are responsible for catalyzing the oxidation of organic matter coupled to a variety of electron acceptors just as microorganisms do in surface sediments, but at much slower rates. The technical difficulties in aseptically sampling deep subsurface sediments and the fact that microbial processes in laboratory incubations of deep subsurface material often do not mimic in situ processes frequently necessitate that microbial activity in the deep subsurface be inferred through nonmicrobiological analyses of ground water. These approaches include measurements of dissolved H2, which can predict the predominant microbially catalyzed redox reactions in aquifers, as well as geochemical and groundwater flow modeling, which can be used to estimate the rates of microbial processes. Microorganisms recovered from the deep subsurface have the potential to affect the fate of toxic organics and inorganic contaminants in groundwater. Microbial activity also greatly influences 1 the chemistry of many pristine groundwaters and contributes to such phenomena as porosity development in carbonate aquifers, accumulation of undesirably high concentrations of dissolved iron, and production of methane and hydrogen sulfide. Although the last decade has seen a dramatic increase in interest in deep subsurface microbiology, in comparison with the study of other habitats, the study of deep subsurface microbiology is still in its infancy.

Physical and Mechanical Properties of Surface Sediments and methane hydrate-bearing sediments in the Shenhu area of South China Sea

NASA Astrophysics Data System (ADS)

Jiang, J.; Shen, Z.; Jia, Y.

2017-12-01

Methane hydrates are superior energy resources and potential predisposing factors of geohazard. With the success in China's persistent exploitation of methane hydrates in the Shenhu area of South China Sea for 60 days, there is an increasing demand for detailed knowledge of sediment properties and hazard assessment in this area. In this paper, the physical and mechanical properties of both the surface sediments and methane hydrate-bearing sediments (MHBS) in the exploitation area, the Shenhu area of South China Sea, were investigated using laboratory geotechnical experiments, and triaxial tests were carried out on remolded sediment samples using a modified triaxial apparatus. The results show that sediments in this area are mainly silt with high moisture content, high plasticity, low permeability and low shear strength. The moisture content and permeability decrease while the shear strength increases with the increasing depth. The elastic modulus and peak strength of MHBS increase with the increasing effective confining pressure and higher hydrate saturation. The cohesion increases with higher hydrate saturation while the internal friction angle is barely affected by hydrate saturation. The obtained results demonstrate clearly that methane hydrates have significant impacts on the physical and mechanical properties of sediments and there is still a wide gap in knowledge about MHBS.

Aromatic-degrading Sphingomonas isolates from the deep subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, J.K.; Romine, M.F.; Balkwill, D.L.

An obligately aerobic chemoheterotrophic bacterium (strain F199) previously isolated from Southeast Coastal Plain subsurface sediments and shown to degrade toluene, naphthalene, and other aromatic compounds was characterized by analysis of its 16S rRNA nucleotide base sequence and cellular lipid composition. Strain F199 contained 2-OH14:0 and 18:1{omega}7c as the predominant cellular fatty acids and sphingolipids that are characteristic of the genus Sphingomonas. Phylogenetic analysis of its 16SrRNA sequence indicated that F199 was most closely related to Sphingomonas capsulata among the bacteria currently in the Ribosomal Database. Five additional isolates from deep Southeast Coastal Plain sediments were determined by 16S rRNA sequencemore » analysis to be closely related to F199. These strains also contained characteristic sphingolipids. Four of these five strains could also grow on a broad range of aromatic compounds and could mineralize [{sup 14C}]toluene and [{sup 14C}]naphthalene. S. capsulata (ATCC 14666), Sphingomonas paucimobiolis (ATCC 29837), and one of the subsurface isolates were unable to grow on any of the aromatic compounds or mineralize toluene or naphthalene. These results indicate that bacteria within the genus Sphingomonas are present in Southeast Coastal Plain subsurface sediments and that the capacity for degrading a broad range of substituted aromatic compounds appears to be common among Sphingomonas species from this environment. 41 refs., 2 figs., 5 tabs.« less

On the value of surface saturated area dynamics mapped with thermal infrared imagery for modeling the hillslope-riparian-stream continuum

NASA Astrophysics Data System (ADS)

Glaser, Barbara; Klaus, Julian; Frei, Sven; Frentress, Jay; Pfister, Laurent; Hopp, Luisa

2016-10-01

The highly dynamic processes within a hillslope-riparian-stream (HRS) continuum are known to affect streamflow generation, but are yet not fully understood. Within this study, we simulated a headwater HRS continuum in western Luxembourg with an integrated hydrologic surface subsurface model (HydroGeoSphere). The model was setup with thorough consideration of catchment-specific attributes and we performed a multicriteria model evaluation (4 years) with special focus on the temporally varying spatial patterns of surface saturation. We used a portable thermal infrared (TIR) camera to map surface saturation with a high spatial resolution and collected 20 panoramic snapshots of the riparian zone (approx. 10 m × 20 m) under different hydrologic conditions. Qualitative and quantitative comparison of the processed TIR panoramas and the corresponding model output panoramas revealed a good agreement between spatiotemporal dynamic model and field surface saturation patterns. A double logarithmic linear relationship between surface saturation extent and discharge was similar for modeled and observed data. This provided confidence in the capability of an integrated hydrologic surface subsurface model to represent temporal and spatial water flux dynamics at small (HRS continuum) scales. However, model scenarios with different parameterizations of the riparian zone showed that discharge and surface saturation were controlled by different parameters and hardly influenced each other. Surface saturation only affected very fast runoff responses with a small volumetric contribution to stream discharge, indicating that the dynamic surface saturation in the riparian zone does not necessarily imply a major control on runoff generation.

Preferential flow, diffuse flow, and perching in an interbedded fractured-rock unsaturated zone

NASA Astrophysics Data System (ADS)

Nimmo, John R.; Creasey, Kaitlyn M.; Perkins, Kim S.; Mirus, Benjamin B.

2017-03-01

Layers of strong geologic contrast within the unsaturated zone can control recharge and contaminant transport to underlying aquifers. Slow diffuse flow in certain geologic layers, and rapid preferential flow in others, complicates the prediction of vertical and lateral fluxes. A simple model is presented, designed to use limited geological site information to predict these critical subsurface processes in response to a sustained infiltration source. The model is developed and tested using site-specific information from the Idaho National Laboratory in the Eastern Snake River Plain (ESRP), USA, where there are natural and anthropogenic sources of high-volume infiltration from floods, spills, leaks, wastewater disposal, retention ponds, and hydrologic field experiments. The thick unsaturated zone overlying the ESRP aquifer is a good example of a sharply stratified unsaturated zone. Sedimentary interbeds are interspersed between massive and fractured basalt units. The combination of surficial sediments, basalts, and interbeds determines the water fluxes through the variably saturated subsurface. Interbeds are generally less conductive, sometimes causing perched water to collect above them. The model successfully predicts the volume and extent of perching and approximates vertical travel times during events that generate high fluxes from the land surface. These developments are applicable to sites having a thick, geologically complex unsaturated zone of substantial thickness in which preferential and diffuse flow, and perching of percolated water, are important to contaminant transport or aquifer recharge.

Preferential flow, diffuse flow, and perching in an interbedded fractured-rock unsaturated zone

USGS Publications Warehouse

Nimmo, John R.; Creasey, Kaitlyn M; Perkins, Kimberlie; Mirus, Benjamin B.

2017-01-01

Layers of strong geologic contrast within the unsaturated zone can control recharge and contaminant transport to underlying aquifers. Slow diffuse flow in certain geologic layers, and rapid preferential flow in others, complicates the prediction of vertical and lateral fluxes. A simple model is presented, designed to use limited geological site information to predict these critical subsurface processes in response to a sustained infiltration source. The model is developed and tested using site-specific information from the Idaho National Laboratory in the Eastern Snake River Plain (ESRP), USA, where there are natural and anthropogenic sources of high-volume infiltration from floods, spills, leaks, wastewater disposal, retention ponds, and hydrologic field experiments. The thick unsaturated zone overlying the ESRP aquifer is a good example of a sharply stratified unsaturated zone. Sedimentary interbeds are interspersed between massive and fractured basalt units. The combination of surficial sediments, basalts, and interbeds determines the water fluxes through the variably saturated subsurface. Interbeds are generally less conductive, sometimes causing perched water to collect above them. The model successfully predicts the volume and extent of perching and approximates vertical travel times during events that generate high fluxes from the land surface. These developments are applicable to sites having a thick, geologically complex unsaturated zone of substantial thickness in which preferential and diffuse flow, and perching of percolated water, are important to contaminant transport or aquifer recharge.

Influence of design, physico-chemical and environmental parameters on pharmaceuticals and fragrances removal by constructed wetlands.

PubMed

Hijosa-Valsero, M; Matamoros, V; Sidrach-Cardona, R; Pedescoll, A; Martín-Villacorta, J; García, J; Bayona, J M; Bécares, E

2011-01-01

The ability of several mesocosm-scale and full-scale constructed wetlands (CWs) to remove pharmaceuticals and personal care products (PPCPs) from urban wastewater was assessed. The results of three previous works were considered as a whole to find common patterns in PPCP removal. The experiment took place outdoors under winter and summer conditions. The mesocosm-scale CWs differed in some design parameters, namely the presence of plants, the vegetal species chosen (Typha angustifolia versus Phragmites australis), the flow configuration (surface flow versus subsurface flow), the primary treatment (sedimentation tank versus HUSB), the feeding regime (batch flow versus continuous saturation) and the presence of gravel bed. The full-scale CWs consisted of a combination of various subsystems (ponds, surface flow CWs and subsurface flow CWs). The studied PPCPs were ketoprofen, naproxen, ibuprofen, diclofenac, salicylic acid, carbamazepine, caffeine, methyl dihydrojasmonate, galaxolide and tonalide. The performance of the evaluated treatment systems was compound dependent and varied as a function of the CW-configuration. In addition, PPCP removal efficiencies were lower during winter. The presence of plants favoured naproxen, ibuprofen, diclofenac, salicylic acid, caffeine, methyl dihydrojasmonate, galaxolide and tonalide removal. Significant positive correlations were observed between the removal of most PPCPs and temperature or redox potential. Accordingly, microbiological pathways appear to be the most likely degradation route for the target PPCPs in the CWs studied.

Influence of hydrological, biogeochemical and temperature transients on subsurface carbon fluxes in a flood plain environment

DOE PAGES

Arora, Bhavna; Spycher, Nicolas F.; Steefel, Carl I.; ...

2016-02-12

Flood plains play a potentially important role in the global carbon cycle. The accumulation of organic matter in flood plains often induces the formation of chemically reduced groundwater and sediments along riverbanks. In this study, our objective is to evaluate the cumulative impact of such reduced zones, water table fluctuations, and temperature gradients on subsurface carbon fluxes in a flood plain at Rifle, Colorado located along the Colorado River. 2-D coupled variably-saturated, non-isothermal flow and biogeochemical reactive transport modeling was applied to improve our understanding of the abiotic and microbially mediated reactions controlling carbon dynamics at the Rifle site. Modelmore » simulations considering only abiotic reactions (thus ignoring microbial reactions) underestimated CO 2 partial pressures observed in the unsaturated zone and severely underestimated inorganic (and overestimated organic) carbon fluxes to the river compared to simulations with biotic pathways. Both model simulations and field observations highlighted the need to include microbial contributions from chemolithoautotrophic processes (e.g., Fe +2 and S -2 oxidation) to match locally-observed high CO 2 concentrations above reduced zones. Observed seasonal variations in CO 2 concentrations in the unsaturated zone could not be reproduced without incorporating temperature gradients in the simulations. Incorporating temperature fluctuations resulted in an increase in the annual groundwater carbon fluxes to the river by 170 % to 3.3 g m -2 d -1, while including water table variations resulted in an overall decrease in the simulated fluxes. We thus conclude that spatial microbial and redox zonation as well as temporal fluctuations of temperature and water table depth contribute significantly to subsurface carbon fluxes in flood plains and need to be represented appropriately in model simulations.« less

Characterizing mercury concentrations and fluxes in a Coastal Plain watershed: Insights from dynamic modeling and data

USGS Publications Warehouse

Golden, H.E.; Knightes, C.D.; Conrads, P.A.; Davis, G.M.; Feaster, T.D.; Journey, C.A.; Benedict, S.T.; Brigham, M.E.; Bradley, P.M.

2012-01-01

Mercury (Hg) is one of the leading water quality concerns in surface waters of the United States. Although watershed-scale Hg cycling research has increased in the past two decades, advances in modeling watershed Hg processes in diverse physiographic regions, spatial scales, and land cover types are needed. The goal of this study was to assess Hg cycling in a Coastal Plain system using concentrations and fluxes estimated by multiple watershed-scale models with distinct mathematical frameworks reflecting different system dynamics. We simulated total mercury (HgT, the sum of filtered and particulate forms) concentrations and fluxes from a Coastal Plain watershed (McTier Creek) using three watershed Hg models and an empirical load model. Model output was compared with observed in-stream HgT. We found that shallow subsurface flow is a potentially important transport mechanism of particulate HgT during periods when connectivity between the uplands and surface waters is maximized. Other processes (e.g., stream bank erosion, sediment re-suspension) may increase particulate HgT in the water column. Simulations and data suggest that variable source area (VSA) flow and lack of rainfall interactions with surface soil horizons result in increased dissolved HgT concentrations unrelated to DOC mobilization following precipitation events. Although flushing of DOC-HgT complexes from surface soils can also occur during this period, DOC-complexed HgT becomes more important during base flow conditions. TOPLOAD simulations highlight saturated subsurface flow as a primary driver of daily HgT loadings, but shallow subsurface flow is important for HgT loads during high-flow events. Results suggest limited seasonal trends in HgT dynamics.

Characterizing mercury concentrations and fluxes in a Coastal Plain watershed: Insights from dynamic modeling and data

USGS Publications Warehouse

Golden, H.E.; Knightes, C.D.; Conrads, P.A.; Davis, G.M.; Feaster, T.D.; Journey, C.A.; Benedict, S.T.; Brigham, M.E.; Bradley, P.M.

2012-01-01

Mercury (Hg) is one of the leading water quality concerns in surface waters of the United States. Although watershed-scale Hg cycling research has increased in the past two decades, advances in modeling watershed Hg processes in diverse physiographic regions, spatial scales, and land cover types are needed. The goal of this study was to assess Hg cycling in a Coastal Plain system using concentrations and fluxes estimated by multiple watershed-scale models with distinct mathematical frameworks reflecting different system dynamics. We simulated total mercury (Hg T, the sum of filtered and particulate forms) concentrations and fluxes from a Coastal Plain watershed (McTier Creek) using three watershed Hg models and an empirical load model. Model output was compared with observed in-stream Hg T. We found that shallow subsurface flow is a potentially important transport mechanism of particulate Hg T during periods when connectivity between the uplands and surface waters is maximized. Other processes (e.g., stream bank erosion, sediment re-suspension) may increase particulate Hg T in the water column. Simulations and data suggest that variable source area (VSA) flow and lack of rainfall interactions with surface soil horizons result in increased dissolved Hg T concentrations unrelated to DOC mobilization following precipitation events. Although flushing of DOC-Hg T complexes from surface soils can also occur during this period, DOC-complexed Hg T becomes more important during base flow conditions. TOPLOAD simulations highlight saturated subsurface flow as a primary driver of daily Hg T loadings, but shallow subsurface flow is important for Hg T loads during high-flow events. Results suggest limited seasonal trends in Hg T dynamics. Copyright 2012 by the American Geophysical Union.

Influence of hydrological, biogeochemical and temperature transients on subsurface carbon fluxes in a flood plain environment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arora, Bhavna; Spycher, Nicolas F.; Steefel, Carl I.

2016-02-01

Flood plains play a potentially important role in the global carbon cycle. The accumulation of organic matter in flood plains often induces the formation of chemically reduced groundwater and sediments along riverbanks. In this study, our objective is to evaluate the cumulative impact of such reduced zones, water table fluctuations, and temperature gradients on subsurface carbon fluxes in a flood plain at Rifle, Colorado located along the Colorado River. 2-D coupled variably-saturated, non-isothermal flow and biogeochemical reactive transport modeling was applied to improve our understanding of the abiotic and microbially mediated reactions controlling carbon dynamics at the Rifle site. Modelmore » simulations considering only abiotic reactions (thus ignoring microbial reactions) underestimated CO2 partial pressures observed in the unsaturated zone and severely underestimated inorganic (and overestimated organic) carbon fluxes to the river compared to simulations with biotic pathways. Both model simulations and field observations highlighted the need to include microbial contributions from chemolithoautotrophic processes (e.g., Fe?2 and S-2 oxidation) to match locally-observed high CO2 concentrations above reduced zones. Observed seasonal variations in CO2 concentrations in the unsaturated zone could not be reproduced without incorporating temperature gradients in the simulations. Incorporating temperature fluctuations resulted in an increase in the annual groundwater carbon fluxes to the river by 170 % to 3.3 g m-2 d-1, while including water table variations resulted in an overall decrease in the simulated fluxes. We conclude that spatial microbial and redox zonation as well as temporal fluctuations of temperature and water table depth contribute significantly to subsurface carbon fluxes in flood plains and need to be represented appropriately in model simulations.« less

Estimating Surface/Subsurface Sediment Mixing in Karst Settings Using 7Be Isotopes

NASA Astrophysics Data System (ADS)

Wicks, C. M.; Paylor, R. L.; Bentley, S. J.

2018-03-01

This study shows that the cosmogenic radionuclide beryllium-7 can be used to track sediment movement through caves. The activities of beryllium-7 and cesium-137 were measured in two different karst settings at both surface and subsurface sites before and after storm runoff events. At one site, 7Be-enriched sediment was detected up to 1.5 km along a stream conduit after a moderate storm event; however, the activity of 137Cs was too variable to show a meaningful pattern. The percentages of surface sediment that was found ranged from 0 to 52% along the entire 3 km cave stream and from 33 to 52% along the upper 1.5 km. At the other site, as much as 96% of the sediment initially discharged at the spring during a storm event was fresh surface material that had traveled into and through the cave stream. Moreover, during the 4 day runoff event, approximately 23% of the total suspended sediment flux was estimated to originate from surface erosion with 78% being reworked sediment from within the cave. The data in this study show that cosmogenic radionuclides with multiyear half-lives are too long-lived to track sediment origins in the caves; whereas, 7Be with a 53.2 day half-life, can be used to track movement of sediment along cave streams.

Determination of geohydrologic framework and extent of d- water contamination using surface geophysical techniques at Picatinny Arsenal, New Jersey

USGS Publications Warehouse

Lacombe, Pierre

1986-01-01

Seismic-refraction, electric-resistivity sounding, and electromagnetic conductivity techniques were used to determine the geohydrologic framework and extent of groundwater contamination at Picatinny Arsenal in northern New Jersey. The area studied encompasses about 4 sq mi at the southern end of the Arsenal. The bedrock surface beneath the glacial sediments was delineated by seismic-refraction techniques. Data for 12 seismic lines were collected using a 12-channel engineering seismograph. Competent bedrock crops out on both sides of the valley, but is about 290 ft below land surface in the deepest part of the topographic valley. Where the exposed bedrock surface forms steep slopes on the valley side, it remains steep below the valley fill. Likewise, gentle bedrock valley slopes have gentle subsurface slopes. The deepest part of the bedrock valley is along the southern extension of the Green Pond fault. The electric-resistivity sounding technique was used to determine the sediment types. Data were collected from four sites using the offset Wenner electrode configuration. Below the surface layer, the sediments have apparent and computed resistivity values of 120 to 170 ohm-meters. These values correspond to a saturated fine-grained sediment such as silt or interbedded sand and clay. Groundwater contamination was by electromagnetic conductivity techniques using transmitting and receiving coils separated by 32.8 ft and 12 ft. Thirteen sites have apparent conductivity values exceeding 15 millimhos/m. Of these, seven sites indicate groundwater contamination from a variety of sources including a sanitary landfill, pyrotechnic testing ground, burning area, former domestic sewage field, salt storage facility, hazardous waste disposal lagoon, sewage treatment plant, and fertilizer storage shed. Three areas underlain by clay or muck are interpreted to be free of contamination. (Author 's abstract)

Gas hydrate characterization from a 3D seismic dataset in the deepwater eastern Gulf of Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

McConnell, Daniel; Haneberg, William C.

Seismic stratigraphic features are delineated using principal component analysis of the band limited data at potential gas hydrate sands, and compared and calibrated with spectral decomposition thickness to constrain thickness in the absence of well control. Layers in the abyssal fan sediments are thinner than can be resolved with 50 Hz seismic and thus comprise composite thin-bed reflections. Amplitude vs frequency analysis are used to indicate gas and gas hydrate reflections. Synthetic seismic wedge models show that with 50Hz seismic data, a 40% saturation of a Plio Pleistocene GoM sand in the hydrate stability zone with no subjacent gas canmore » produce a phase change (negative to positive) with a strong correlation between amplitude and hydrate saturation. The synthetic seismic response is more complicated if the gas hydrate filled sediments overlie gassy sediments. Hydrate (or gas) saturation in thin beds enhances the amplitude response and can be used to estimate saturation. Gas hydrate saturation from rock physics, amplitude, and frequency analysis is compared to saturation derived from inversion at several interpreted gas hydrate accumulations in the eastern Gulf of Mexico.« less

Contrasting styles of large-scale displacement of unconsolidated sand: examples from the early Jurassic Navajo Sandstone on the Colorado Plateau, USA

NASA Astrophysics Data System (ADS)

Bryant, Gerald

2015-04-01

Large-scale soft-sediment deformation features in the Navajo Sandstone have been a topic of interest for nearly 40 years, ever since they were first explored as a criterion for discriminating between marine and continental processes in the depositional environment. For much of this time, evidence for large-scale sediment displacements was commonly attributed to processes of mass wasting. That is, gravity-driven movements of surficial sand. These slope failures were attributed to the inherent susceptibility of dune sand responding to environmental triggers such as earthquakes, floods, impacts, and the differential loading associated with dune topography. During the last decade, a new wave of research is focusing on the event significance of deformation features in more detail, revealing a broad diversity of large-scale deformation morphologies. This research has led to a better appreciation of subsurface dynamics in the early Jurassic deformation events recorded in the Navajo Sandstone, including the important role of intrastratal sediment flow. This report documents two illustrative examples of large-scale sediment displacements represented in extensive outcrops of the Navajo Sandstone along the Utah/Arizona border. Architectural relationships in these outcrops provide definitive constraints that enable the recognition of a large-scale sediment outflow, at one location, and an equally large-scale subsurface flow at the other. At both sites, evidence for associated processes of liquefaction appear at depths of at least 40 m below the original depositional surface, which is nearly an order of magnitude greater than has commonly been reported from modern settings. The surficial, mass flow feature displays attributes that are consistent with much smaller-scale sediment eruptions (sand volcanoes) that are often documented from modern earthquake zones, including the development of hydraulic pressure from localized, subsurface liquefaction and the subsequent escape of fluidized sand toward the unconfined conditions of the surface. The origin of the forces that produced the lateral, subsurface movement of a large body of sand at the other site is not readily apparent. The various constraints on modeling the generation of the lateral force required to produce the observed displacement are considered here, along with photodocumentation of key outcrop relationships.

Isotopic identification of the source of methane in subsurface sediments of an area surrounded by waste disposal facilities

USGS Publications Warehouse

Hackley, Keith C.; Liu, Chao-Li; Trainor, D.

1999-01-01

The major source of methane (CH4) in subsurface sediments on the property of a former hazardous waste treatment facility was determined using isotopic analyses measured on CH4 and associated groundwater. The site, located on an earthen pier built into a shallow wetland lake, has had a history of waste disposal practices and is surrounded by landfills and other waste management facilities. Concentrations of CH4 up to 70% were found in the headspace gases of several piezometers screened at 3 different depths (ranging from 8 to 17 m) in lacustrine and glacial till deposits. Possible sources of the CH4 included a nearby landfill, organic wastes from previous impoundments and microbial gas derived from natural organic matter in the sediments. Isotopic analyses included ??13C, ??D, 14C, and 3H on select CH4 samples and ??D and ??18O on groundwater samples. Methane from the deepest glacial till and intermediate lacustrine deposits had ??13C values from -79 to -82???, typical of natural 'drift gas' generated by microbial CO2-reduction. The CH4 from the shallow lacustrine deposits had ??13C values from -63 to -76???, interpreted as a mixture between CH4 generated by microbial fermentation and the CO2-reduction processes within the subsurface sediments. The ??D values of all the CH4 samples were quite negative ranging from -272 to -299???. Groundwater sampled from the deeper zones also showed quite negative ??D values that explained the light ??D observed for the CH4. Radiocarbon analyses of the CH4 showed decreasing 14C activity with depth, from a high of 58 pMC in the shallow sediments to 2 pMC in the deeper glacial till. The isotopic data indicated the majority of CH4 detected in the fill deposits of this site was microbial CH4 generated from naturally buried organic matter within the subsurface sediments. However, the isotopic data of CH4 from the shallow piezometers was more variable and the possibility of some mixing with oxidized landfill CH4 could not be completely ruled out.

Sulfur and iron cycling in deep-subsurface, coal bed-containing sediments off Shimokita (Japan)

NASA Astrophysics Data System (ADS)

Riedinger, N.; Smirnoff, M. N.; Gilhooly, W.; Phillips, S. C.; Lyons, T. W.; 337 Scientific Party, I.

2013-12-01

The main goal of IODP Expedition 337 was the identification and characterization of the deep coal bed biosphere and hydrocarbon system off the Shimokita Peninsula (Japan) in the northwestern Pacific using the D/V Chikyu. To accomplish this scientific objective, it was also necessary to investigate the inorganic biogeochemistry in order to identify possible electron acceptors and bio-essential nutrients. These biogeochemical parameters greatly influence both, the composition and abundance of microbial communities as well as the organic carbon cycle. In turn, the microbially mediated carbon cycle influences the diagenetic reactions in the subsurface, thus, altering geochemical and physical characteristics of the material. Here we present results from metal and sulfur geochemical analyses from the deep-subsurface sediments (about 1250 to 2466 mbsf) at Site C0020 off Shimokita. The measured concentrations of acid volatile sulfur (AVS) as well as chromium reducible sulfur (CRS) reflect the alteration of iron oxides to iron sulfides and indicate that the main sulfur-bearing phase in the investigated sediments is pyrite. Concentrations of intermediate sulfur species are minor and occur mainly in the coal-bearing interval. Our data show that the uppermost sediments contain higher amounts of pyrite (up to 1.2 wt.%) with an average of 0.5 wt.% compared to the deeper deposits (below about 1800 mbsf), which show an average of 0.16 wt.%. In contrast, iron oxide concentrations are highest in the deeper sediment sections (up to 0.4%), where pyrite concentrations are low. The alteration of iron oxides to sulfides in theses lower section was probably governed by the amount of available sulfide in the pore water. The occurrence of (bio-)reactive iron phases in these deeply buried sediments has implications for the deep biosphere as those minerals have the potential to serve as electron acceptors during burial, including reactions involving deep sourced electron donors, such as hydrogen and methane - related to the coal bed as the potential source. Thus, the deep subsurface coal beds off Shimokita provide an ideal environment to investigate microbial and metal interactions under extreme conditions.

MOBILIZATION AND CHARACTERIZATION OF COLLOIDS GENERATED FROM CEMENT LEACHATES MOVING THROUGH A SRS SANDY SEDIMENT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, D.; Roberts, K.; Kaplan, D.

Naturally occurring mobile colloids are ubiquitous and are involved in many important processes in the subsurface zone. For example, colloid generation and subsequent mobilization represent a possible mechanism for the transport of contaminants including radionuclides in the subsurface environments. For colloid-facilitated transport to be significant, three criteria must be met: (1) colloids must be generated; (2) contaminants must associate with the colloids preferentially to the immobile solid phase (aquifer); and (3) colloids must be transported through the groundwater or in subsurface environments - once these colloids start moving they become 'mobile colloids'. Although some experimental investigations of particle release inmore » natural porous media have been conducted, the detailed mechanisms of release and re-deposition of colloidal particles within natural porous media are poorly understood. Even though this vector of transport is known, the extent of its importance is not known yet. Colloid-facilitated transport of trace radionuclides has been observed in the field, thus demonstrating a possible radiological risk associated with the colloids. The objective of this study was to determine if cementitious leachate would promote the in situ mobilization of natural colloidal particles from a SRS sandy sediment. The intent was to determine whether cementitious surface or subsurface structure would create plumes that could produce conditions conducive to sediment dispersion and mobile colloid generation. Column studies were conducted and the cation chemistries of influents and effluents were analyzed by ICP-OES, while the mobilized colloids were characterized using XRD, SEM, EDX, PSD and Zeta potential. The mobilization mechanisms of colloids in a SRS sandy sediment by cement leachates were studied.« less

Effective diffusion coefficients of DNAPL waste components in saturated low permeability soil materials.

PubMed

Ayral-Cinar, Derya; Demond, Avery H

2017-12-01

Diffusion is regarded as the dominant transport mechanism into and out of low permeable subsurface lenses and layers in the subsurface. But, some reports of mass storage in such zones are higher than what might be attributable to diffusion, based on estimated diffusion coefficients. Despite the importance of diffusion to efforts to estimate the quantity of residual contamination in the subsurface, relatively few studies present measured diffusion coefficients of organic solutes in saturated low permeability soils. This study reports the diffusion coefficients of a trichloroethylene (TCE), and an anionic surfactant, Aerosol OT (AOT), in water-saturated silt and a silt-montmorillonite (25:75) mixture, obtained using steady-state experiments. The relative diffusivity ranged from 0.11 to 0.17 for all three compounds for the silt and the silt-clay mixture that was allowed to expand. In the case in which the swelling was constrained, the relative diffusivity was about 0.07. In addition, the relative diffusivity of 13 C-labeled TCE through a water saturated silt-clay mixture that had contacted a field dense non-aqueous phase liquid (DNAPL) for 18months was measured and equaled 0.001. These experimental results were compared with the estimates generated using common correlations, and it was found that, in all cases, the measured diffusion coefficients were significantly lower than the estimated. Thus, the discrepancy between mass accumulations observed in the field and the mass storage that can attributable to diffusion may be greater than previously believed. Copyright © 2017. Published by Elsevier B.V.

PROTOZOA IN SUBSURFACE SEDIMENTS FROM SITE CONTAMI- NATED WITH AVIATION GASOLINE OR JET FUEL

EPA Science Inventory

Numbers of protozoa in the subsurface of aviation gasoline and jet fuel spill areas at a Coast Guard base at Traverse City, Mich., were determined. Boreholes were drilled in an uncontaminated location, in contaminated but untreated parts of the fuel plumes, and in the aviation ga...

Effect of flow on bacterial transport and biofilm formation in saturated porous media

NASA Astrophysics Data System (ADS)

Rusconi, R.

2016-12-01

Understanding the transport of bacteria in saturated porous media is crucial for many applications ranging from the management of pumping wells subject to bio-clogging to the design of new bioremediation schemes for subsurface contamination. However, little is known about the spatial distribution of bacteria at the pore scale, particularly when small-scale heterogeneities - always present even in seemingly homogeneous aquifers - lead to preferential pathways for groundwater flow. In particular, the coupling of flow and motility has recently been shown to strongly affect bacterial transport1, and this leads us to predict that subsurface flow may strongly affect the dispersal of bacteria and the formation of biofilms in saturated aquifers. I present here microfluidic experiments combined with numerical simulations to show how the topological features of the flow correlate with bacterial concentration and promote the attachment of bacteria to specific regions of the pore network, which will ultimately influence the formations of biofilms. These results highlight the intimate link between small-scale biological processes and transport in porous media.

Characterization of a Louisiana Bay Bottom

NASA Astrophysics Data System (ADS)

Freeman, A. M.; Roberts, H. H.

2016-02-01

This study correlates side-scan sonar and CHIRP water bottom-subbottom acoustic amplitudes with cone penetrometer data to expand the limited understanding of the geotechnical properties of sediments in coastal Louisiana's bays. Standardized analysis procedures were developed to characterize the bay bottom and shallow subsurface of the Sister Lake bay bottom. The CHIRP subbottom acoustic data provide relative amplitude information regarding reflection horizons of the bay bottom and shallow subsurface. An amplitude analysis technique was designed to identify different reflectance regions within the lake from the CHIRP subbottom profile data. This amplitude reflectivity analysis technique provides insight into the relative hardness of the bay bottom and shallow subsurface, useful in identifying areas of erosion versus deposition from storms, as well as areas suitable for cultch plants for state oyster seed grounds, or perhaps other restoration projects. Side-scan and CHIRP amplitude reflectivity results are compared to penetrometer data that quantifies geotechnical properties of surface and near-surface sediments. Initial results indicate distinct penetrometer signatures that characterize different substrate areas including soft bottom, storm-deposited silt-rich sediments, oyster cultch, and natural oyster reef areas. Although amplitude analysis of high resolution acoustic data does not directly quantify the geotechnical properties of bottom sediments, our analysis indicates a close relationship. The analysis procedures developed in this study can be applied in other dynamic coastal environments, "calibrating" the use of synoptic acoustic methods for large-scale water bottom characterization.

Open inlet conversion: Water quality benefits of two designs

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for movement of sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine the reduction in drainage effluent total suspended sediment (TSS) and phosphorus (P) concentr...

Recruitment from an egg bank into the plankton in Baisha Bay, a mariculture base in Southern China

NASA Astrophysics Data System (ADS)

Wang, Qing; Luan, Lei-Lei; Chen, Liang-Dong; Yuan, Dan-Ni; Liu, Sheng; Hwang, Jiang-Shiou; Yang, Yu-Feng

2016-11-01

The potential recruitment of resting eggs of calanoid copepods and rotifers to planktonic populations was investigated in the surface and sub-surface sediments of three mariculture zones: an integrated seaweed Gracilaria lemaneiformis and shellfish cultivation area (G), a fish cultivation area (F), and a shellfish cultivation area (S), as well as the sediments of a nearby control sea area (C) in a mariculture base in Southern China. The potential recruitment of copepod and rotifer eggs in the sediments of C and G was significantly higher than in F and S. Potential recruitment in the sub-surface sediments of F and S was not observed, suggesting that fish and shellfish mariculture may be responsible for this decrease. The hatching success of resting eggs of copepods and rotifers was affected by mariculture type, and that large-scale seaweed cultivation may offset the adverse effect of fish and shellfish cultivation on the resting eggs if integrated cultivation is adopted.

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

DOE PAGES

Castelle, Cindy J.; Hug, Laura A.; Wrighton, Kelly C.; ...

2013-08-27

Microorganisms in the subsurface represent a substantial but poorly understood component of the Earth’s biosphere. Subsurface environments are complex and difficult to characterize; thus, their microbiota have remained as a ‘dark matter’ of the carbon and other biogeochemical cycles. Here we deeply sequence two sediment-hosted microbial communities from an aquifer adjacent to the Colorado River, CO, USA. No single organism represents more than ~1% of either community. Remarkably, many bacteria and archaea in these communities are novel at the phylum level or belong to phyla lacking a sequenced representative. The dominant organism in deeper sediment, RBG-1, is a member ofmore » a new phylum. On the basis of its reconstructed complete genome, RBG-1 is metabolically versatile. Its wide respiration-based repertoire may enable it to respond to the fluctuating redox environment close to the water table. We document extraordinary microbial novelty and the importance of previously unknown lineages in sediment biogeochemical transformations.« less

Immobilization and Natural Attenuation of Arsenic in Surface and Subsurface Sediments

NASA Astrophysics Data System (ADS)

O'Day, P. A.; Illera, V.; Choi, S.; Vlassopoulos, D.

2008-12-01

Understanding of molecular-scale biogeochemical processes that control the mobilization and distribution of As and other oxyanions can be used to develop remediation strategies that take advantage of natural geochemical and hydrologic gradients. Arsenic and other toxic oxyanions can be mobilized at low bulk sediment concentrations (ppm range) and thus, treatment technologies are challenged by low contaminant concentrations, widespread sources, variable pH and Eh conditions, and inaccessibility of subsurface environments. In situ chemical amendments to soils and sediments can be used to decrease the mobility and bioaccessibility of As and oxyanions through sorption to, or precipitation with, stabilizing phases. At a site near San Francisco Bay (CA, USA), treatment of As-contaminated soils with sulfate-cement amendments has effectively immobilized As. Laboratory experiments with field soils and spectroscopic characterizations showed that in high pH cement-type treatments, As is precipitated in ettringite-type phases (Ca-Al sulfates), whereas in low pH ferrous sulfate treatments, As is associated with an iron-arsenate phase (angellelite). The presence of As-associated ettringite-type phases in field sediments amended more than a decade ago indicates long-term stability of these neophases, as long as environmental conditions are relatively constant. At sites of subsurface contamination, monitored natural attenuation (MNA) as a remediation approach for As is gaining interest and acceptance. Successful implementation of MNA requires a mechanistic understanding of As sequestration processes and of the subsurface conditions that may enhance or reduce long-term effectiveness. At a former military site (MA, USA), naturally occurring As was mobilized from sediments as a result of reducing conditions from addition of organic carbon as a biodegradation treatment of chlorinated solvents. Elevated As concentrations were not detected further than about 30 m downgradient of the injection, indicating that As sequestration was also occurring by natural processes in the aquifer. Laboratory experiments with aquifer sediments and spectroscopic characterization of reaction products were used to quantify the extent of As(III) sorption and abiotic oxidation to As(V), probably by Mn(III,IV) present in sediment minerals. Interrogation by XANES spectroscopy and analysis of uptake data indicated that sediments have a limited abiotic oxidation capacity for As(III), which did not exceed 30% of the total amount of As sorbed and was estimated at 0.025 to 0.4 mmol/kg sediment. Results indicate that pH-controlled sorption is the primary mechanism for As uptake and sediment capacity for oxidative sorption is limited. As such, MNA may be temporarily effective at this site, depending on the size of the contaminant plume and the rate of groundwater flow.

Immobilization of U(VI) from oxic groundwater by Hanford 300 Area sediments and effects of Columbia River water.

PubMed

Ahmed, Bulbul; Cao, Bin; Mishra, Bhoopesh; Boyanov, Maxim I; Kemner, Kenneth M; Fredrickson, Jim K; Beyenal, Haluk

2012-09-01

Regions within the U.S. Department of Energy Hanford 300 Area (300 A) site experience periodic hydrologic influences from the nearby Columbia River as a result of changing river stage, which causes changes in groundwater elevation, flow direction and water chemistry. An important question is the extent to which the mixing of Columbia River water and groundwater impacts the speciation and mobility of uranium (U). In this study, we designed experiments to mimic interactions among U, oxic groundwater or Columbia River water, and 300 A sediments in the subsurface environment of Hanford 300 A. The goals were to investigate mechanisms of: 1) U immobilization in 300 A sediments under bulk oxic conditions and 2) U remobilization from U-immobilized 300 A sediments exposed to oxic Columbia River water. Initially, 300 A sediments in column reactors were fed with U(VI)-containing oxic 1) synthetic groundwater (SGW), 2) organic-amended SGW (OA-SGW), and 3) de-ionized (DI) water to investigate U immobilization processes. After that, the sediments were exposed to oxic Columbia River water for U remobilization studies. The results reveal that U was immobilized by 300 A sediments predominantly through reduction (80-85%) when the column reactor was fed with oxic OA-SGW. However, U was immobilized by 300 A sediments through adsorption (100%) when the column reactors were fed with oxic SGW or DI water. The reduced U in the 300 A sediments fed with OA-SGW was relatively resistant to remobilization by oxic Columbia River water. Oxic Columbia River water resulted in U remobilization (∼7%) through desorption, and most of the U that remained in the 300 A sediments fed with OA-SGW (∼93%) was in the form of uraninite nanoparticles. These results reveal that: 1) the reductive immobilization of U through OA-SGW stimulation of indigenous 300 A sediment microorganisms may be viable in the relatively oxic Hanford 300 A subsurface environments and 2) with the intrusion of Columbia River water, desorption may be the primary process resulting in U remobilization from OA-SGW-stimulated 300 A sediments at the subsurface of the Hanford 300 A site. Copyright © 2012 Elsevier Ltd. All rights reserved.

Use of PRD1 bacteriophage in groundwater viral transport, inactivation, and attachment studies

USGS Publications Warehouse

Harvey, R.W.; Ryan, J.N.

2004-01-01

PRD1, an icosahedra-shaped, 62 nm (diameter), double-stranded DNA bacteriophage with an internal membrane, has emerged as an important model virus for studying the manner in which microorganisms are transported through a variety of groundwater environments. The popularity of this phage for use in transport studies involving geologic media is due, in part, to its relative stability over a range of temperatures and low degree of attachment in aquifer sediments. Laboratory and field investigations employing PRD1 are leading to a better understanding of viral attachment and transport behaviors in saturated geologic media and to improved methods for describing mathematically subsurface microbial transport at environmentally significant field scales. Radioisotopic labeling of PRD1 is facilitating additional information about the nature of viral interactions with solid surfaces in geologic media, the importance of iron oxide surfaces, and allowing differentiation between inactivation and attachment in field-scale tracer tests. ?? 2004 Published by Elsevier B.V. on behalf of the Federation of European Microbiological Societies.

Hydrology of the solid waste burial ground as related to potential migration of radionuclides, Idaho National Engineering Laboratory

USGS Publications Warehouse

Barraclough, Jack T.; Robertson, J.B.; Janzer, V.J.; Saindon, L.G.

1976-01-01

A study was made (1970-1974) to evaluate the geohydrologic and geochemical controls on subsurface migration of radionuclides from pits and trenches in the Idaho National Engineering Laboratory (INEL) solid waste burial ground and to determine the existence and extent of radionuclide migration from the burial ground. A total of about 1,700 sediment, rock, and water samples were collected from 10 observation wells drilled in and near the burial ground of Idaho National Engineering Laboratory, formerly the National Reactor Testing Station (NRTS). Within the burial ground area, the subsurface rocks are composed principally of basalt. Wind- and water-deposited sediments occur at the surface and in beds between the thicker basalt zones. Two principal sediment beds occur at about 110 feet and 240 feet below the land surface. The average thickness of the surficial sedimentary layer is about 15 feet while that of the two principal subsurface layers is 13 and 14 feet, respectively. The water table in the aquifer beneath the burial ground is at a depth of about 580 feet. Fission, activation, and transuranic elements were detected in some of the samples from the 110- and 240-foot sedimentary layers. (Woodard-USGS)

Study on small-strain behaviours of methane hydrate sandy sediments using discrete element method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yu Yanxin; Cheng Yipik; Xu Xiaomin

Methane hydrate bearing soil has attracted increasing interest as a potential energy resource where methane gas can be extracted from dissociating hydrate-bearing sediments. Seismic testing techniques have been applied extensively and in various ways, to detect the presence of hydrates, due to the fact that hydrates increase the stiffness of hydrate-bearing sediments. With the recognition of the limitations of laboratory and field tests, wave propagation modelling using Discrete Element Method (DEM) was conducted in this study in order to provide some particle-scale insights on the hydrate-bearing sandy sediment models with pore-filling and cementation hydrate distributions. The relationship between shear wavemore » velocity and hydrate saturation was established by both DEM simulations and analytical solutions. Obvious differences were observed in the dependence of wave velocity on hydrate saturation for these two cases. From the shear wave velocity measurement and particle-scale analysis, it was found that the small-strain mechanical properties of hydrate-bearing sandy sediments are governed by both the hydrate distribution patterns and hydrate saturation.« less

Heterotrophic potential of Atribacteria from deep marine Antarctic sediment

NASA Astrophysics Data System (ADS)

Carr, S. A.; Orcutt, B.; Mandernack, K. W.; Spear, J. R.

2015-12-01

Bacteria belonging to the newly classified candidate phylum "Atribacteria" (formerly referred to as "OP9" and "JS1") are common in anoxic methane-rich sediments. However, the metabolic functions and biogeochemical role of these microorganisms in the subsurface remains unrealized due to the lack of pure culture representatives. This study observed a steady increase of Atribacteria-related sequences with increasing sediment depth throughout the methane-rich zone of the Adélie Basin, Antarctica (according to a 16S rRNA gene survey). To explore the functional potential of Atribacteria in this basin, samples from various depths (14, 25 and 97 meters below seafloor), were subjected to metagenomic sequencing. Additionally, individual cells were separated from frozen, unpreserved sediment for whole genome amplification. The successful isolation and sequencing of a single-amplified Atribacteria genome from these unpreserved sediments demonstrates a future use of single cell techniques with previously collected and frozen sediments. Our resulting single-cell amplified genome, combined with metagenomic interpretations, provides our first insights to the functional potential of Atribacteria in deep subsurface settings. As observed for non-marine Atribacteria, genomic analyses suggest a heterotrophic metabolism, with Atribacteria potentially producing fermentation products such as acetate, ethanol and CO2. These products may in turn support methanogens within the sediment microbial community and explain the frequent occurrence of Atribacteria in anoxic methane-rich sediments.

Dissolved oxygen saturation controls PAH biodegradation in freshwater estuary sediments.

PubMed

Boyd, T J; Montgomery, M T; Steele, J K; Pohlman, J W; Reatherford, S R; Spargo, B J; Smith, D C

2005-02-01

Polycyclic aromatic hydrocarbons (PAHs) are common contaminants in terrestrial and aquatic environments and can represent a significant constituent of the carbon pool in coastal sediments. We report here the results of an 18-month seasonal study of PAH biodegradation and heterotrophic bacterial production and their controlling biogeochemical factors from 186 sediment samples taken in a tidally influenced freshwater estuary. For each sampling event, measurements were averaged from 25-45 stations covering approximately 250 km(2). There was a clear relationship between bacterial production and ambient temperature, but none between production and bottom water dissolved oxygen (DO) % saturation or PAH concentrations. In contrast with other studies, we found no effect of temperature on the biodegradation of naphthalene, phenanthrene, or fluoranthene. PAH mineralization correlated with bottom water DO saturation above 70% (r(2) > 0.99). These results suggest that the proportional utilization of PAH carbon to natural organic carbon is as much as three orders of magnitude higher during cooler months, when water temperatures are lower and DO % saturation is higher. Infusion of cooler, well-oxygenated water to the water column overlying contaminated sediments during the summer months may stimulate PAH metabolism preferentially over non-PAH organic matter.

A porewater-based stable isotope approach for the investigation of subsurface hydrological processes

NASA Astrophysics Data System (ADS)

Garvelmann, J.; Külls, C.; Weiler, M.

2012-02-01

Predicting and understanding subsurface flowpaths is still a crucial issue in hydrological research. We present an experimental approach to reveal present and past subsurface flowpaths of water in the unsaturated and saturated zone. Two hillslopes in a humid mountainous catchment have been investigated. The H2O(liquid) - H2O(vapor) equilibration laser spectroscopy method was used to obtain high resolution δ2H vertical depth profiles of pore water at various points along two fall lines of a pasture hillslope in the southern Black Forest, Germany. The Porewater-based Stable Isotope Profile (PSIP) approach was developed to use the integrated information of several vertical depth profiles of deuterium along transects at the hillslope. Different shapes of depth profiles were observed in relation to hillslope position. The statistical variability (inter-quartile range and standard deviation) of each profile was used to characterize different types of depth profiles. The profiles upslope or with a weak affinity for saturation as indicated by a low topographic wetness index preserve the isotopic input signal by precipitation with a distinct seasonal variability. These observations indicate mainly vertical movement of soil water in the upper part of the hillslope before sampling. The profiles downslope or at locations with a strong affinity for saturation do not show a similar seasonal isotopic signal. The input signal is erased in the foothills and a large proportion of pore water samples are close to the isotopic values of δ2H in streamwater during base flow conditions indicating the importance of the groundwater component in the catchment. Near the stream indications for efficient mixing of water from lateral subsurface flow paths with vertical percolation are found.

A practical tool for estimating subsurface LNAPL distributions and transmissivity using current and historical fluid levels in groundwater wells: Effects of entrapped and residual LNAPL.

PubMed

Lenhard, R J; Rayner, J L; Davis, G B

2017-10-01

A model is presented to account for elevation-dependent residual and entrapped LNAPL above and below, respectively, the water-saturated zone when predicting subsurface LNAPL specific volume (fluid volume per unit area) and transmissivity from current and historic fluid levels in wells. Physically-based free, residual, and entrapped LNAPL saturation distributions and LNAPL relative permeabilities are integrated over a vertical slice of the subsurface to yield the LNAPL specific volumes and transmissivity. The model accounts for effects of fluctuating water tables. Hypothetical predictions are given for different porous media (loamy sand and clay loam), fluid levels in wells, and historic water-table fluctuations. It is shown the elevation range from the LNAPL-water interface in a well to the upper elevation where the free LNAPL saturation approaches zero is the same for a given LNAPL thickness in a well regardless of porous media type. Further, the LNAPL transmissivity is largely dependent on current fluid levels in wells and not historic levels. Results from the model can aid developing successful LNAPL remediation strategies and improving the design and operation of remedial activities. Results of the model also can aid in accessing the LNAPL recovery technology endpoint, based on the predicted transmissivity. Copyright © 2017 Commonwealth Scientific and Industrial Research Organisation - Copyright 2017. Published by Elsevier B.V. All rights reserved.

Coupled surface and subsurface flow modeling of natural hillslopes in the Aburrá Valley (Medellín, Colombia)

NASA Astrophysics Data System (ADS)

Blessent, Daniela; Barco, Janet; Temgoua, André Guy Tranquille; Echeverrri-Ramirez, Oscar

2017-03-01

Numerical results are presented of surface-subsurface water modeling of a natural hillslope located in the Aburrá Valley, in the city of Medellín (Antioquia, Colombia). The integrated finite-element hydrogeological simulator HydroGeoSphere is used to conduct transient variably saturated simulations. The objective is to analyze pore-water pressure and saturation variation at shallow depths, as well as volumes of water infiltrated in the porous medium. These aspects are important in the region of study, which is highly affected by soil movements, especially during the high-rain seasons that occur twice a year. The modeling exercise considers rainfall events that occurred between October and December 2014 and a hillslope that is currently monitored because of soil instability problems. Simulation results show that rainfall temporal variability, mesh resolution, coupling length, and the conceptual model chosen to represent the heterogeneous soil, have a noticeable influence on results, particularly for high rainfall intensities. Results also indicate that surface-subsurface coupled modeling is required to avoid unrealistic increase in hydraulic heads when high rainfall intensities cause top-down saturation of soil. This work is a first effort towards fostering hydrogeological modeling expertise that may support the development of monitoring systems and early landslide warning in a country where the rainy season is often the cause of hydrogeological tragedies associated with landslides, mud flow or debris flow.

Water Chemistry of Ephemeral Streams

Treesearch

J.L. Michael; W.P. Fowler; H.L. Gibbs; J.B. Fischer

1994-01-01

Four individual, but related, studies are currently being conducted to determine the effects of clearcut and seed tree reproduction cutting methods on stream chemistry, sedimentation, and bedload movement by monitoring herbicide and nutrient movement in stemflow, overland flow, streamflow, and zonal subsurface flow. Sediment movement is being quantified for...

Deep subsurface life in Bengal Fan sediments (IODP Exp. 354)

NASA Astrophysics Data System (ADS)

Adhikari, R. R.; Heuer, V. B.; Elvert, M.; Kallmeyer, J.; Kitte, J. A.; Wörmer, L.; Hinrichs, K. U.

2017-12-01

We collected Bengal Fan sediment samples along a 8°N transect during International Ocean Discovery Program Expedition 354 (February - March 2015, Singapore - Colombo, Sri Lanka) to study subseafloor life in this, as yet unstudied, area. Among other biogeochemical parameters, we quantified microbial biomass by analyzing prokaryotic cells using epifluorescence microscopy after detaching cells from the sediment, and bacterial endospores by analyzing the diagnostic biomarker dipicolinic acid (DPA) by detection of fluorescence of the terbium-DPA complex. To gain understanding of total microbial activity, we quantified hydrogen utilization potential of hydrogenase enzymes, which are ubiquitous in subsurface microorganisms, by using a tritium assay. We measured highest cell concentrations of ca. 108 cells g-1 in shallow sediments close to the seafloor. These concentrations are one to two orders of magnitude lower than in most marine continental margin settings [1]. Similar to the global trend [1], cell concentrations decreased with depth according to a power-law function. Endospore concentrations scattered between ca. 105 and 107 cells g-1 sediment at all sites and depths. We could not observe a clear relationship of endospore concentration and sediment depth; instead, it appears to be linked to lithology and total organic carbon content. Bulk Hydrogenase enzyme activity ranged from nmolar to μmolar range of H2 g-1d-1. Similar to previous observations [2], per-cell hydrogen utilization depends on vertical biogeochemical zones, which could be due to the differences in hydrogen utilization requirements/efficiency of the respective metabolic processes such as sulfate reduction, methanogenesis, fermentation etc. Bengal fan is highly dynamic due to channel and levee systems and the sediments are dominated by turbidites, thick sand layers and hemipelagic deposits, which may control biogeochemical zonation. Based on our microbial biomass and activity data, we suggest that the nature, quality and origin of sedimentary material influence the deep subsurface life. [1] Kallmeyer et al., (2012) PNAS 109(40), 16213-16216 [2] Adhikari et al., (2016) Frontiers in Microbiology 7:8

MORPHOLOGICAL AND CULTURAL COMPARISON OF MICROORGANISMS IN SURFACE SOIL AND SUBSURFACE SEDIMENTS AT A PRISTINE STUDY SITE IN OKLAHOMA (JOURNAL VERSION)

EPA Science Inventory

Surface-soil and subsurface microfloras at the site of a shallow aquifer in Oklahoma were examined and compared with respect to (1) total and viable cell numbers, (2) colony and cell types that grew on various plating media, (3) cell morphologies seen in flotation films stripped ...

Cesium migration in saturated silica sand and Hanford sediments as impacted by ionic strength.

PubMed

Flury, Markus; Czigány, Szabolcs; Chen, Gang; Harsh, James B

2004-07-01

Large amounts of 137Cs have been accidentally released to the subsurface from the Hanford nuclear site in the state of Washington, USA. The cesium-containing liquids varied in ionic strengths, and often had high electrolyte contents, mainly in the form of NaNO3 and NaOH, reaching concentrations up to several moles per liter. In this study, we investigated the effect of ionic strengths on Cs migration through two types of porous media: silica sand and Hanford sediments. Cesium sorption and transport was studied in 1, 10, 100, and 1000 mM NaCl electrolyte solutions at pH 10. Sorption isotherms were constructed from batch equilibrium experiments and the batch-derived sorption parameters were compared with column breakthrough curves. Column transport experiments were analyzed with a two-site equilibrium-nonequilibrium model. Cesium sorption to the silica sand in batch experiments showed a linear sorption isotherm for all ionic strengths, which matched well with the results from the column experiments at 100 and 1000 mM ionic strength; however, the column experiments at 1 and 10 mM ionic strength indicated a nonlinear sorption behavior of Cs to the silica sand. Transport through silica sand occurred under one-site sorption and equilibrium conditions. Cesium sorption to Hanford sediments in both batch and column experiments was best described with a nonlinear Freundlich isotherm. The column experiments indicated that Cs transport in Hanford sediments occurred under two-site equilibrium and nonequilibrium sorption. The effect of ionic strength on Cs transport was much more pronounced in Hanford sediments than in silica sands. Effective retardation factors of Cs during transport through Hanford sediments were reduced by a factor of 10 when the ionic strength increased from 100 to 1000 mM; for silica sand, the effective retardation was reduced by a factor of 10 when ionic strength increased from 1 to 1000 mM. A two order of magnitude change in ionic strength was needed in the silica sand to observe the same change in Cs retardation as in Hanford sediments. Copyright 2003 Elsevier B.V.

A three-dimensional QP imaging of the shallowest subsurface of Campi Flegrei offshore caldera, southern Italy

NASA Astrophysics Data System (ADS)

Serlenga, Vincenzo; de Lorenzo, Salvatore; Russo, Guido; Amoroso, Ortensia; Virieux, Jean; Garambois, Stephane; Zollo, Aldo

2017-04-01

We build a three-dimensional attenuation image of the shallowest subsurface of Campi Flegrei caldera, a resurgent caldera located 15 km west of Naples, southern Italy. Extracting tstar (t*) measurements from an active seismic dataset can be achieved by a spectral ratio method which has been intensively used for earthquakes. The applicability of such measurement has to be validated for active seismic datasets which have a narrower frequency band compared to frequency band of quakes. The validation, as well as the robustness, of such extraction for narrow Ricker source wavelet has been checked through many synthetic and realistic tests. These tests allow us to conclude that this measurement is valid as long as 1) short signal time window are chosen to perform the spectral analysis; 2) the effects caused by heterogeneities of the sampled medium on the seismic spectra have to be taken into account in the description of elastic Green's function. Through such a deconvolution strategy, contributions of the fine velocity structure on signal amplitudes have been significantly removed: in case of suspicious behavior of the spectrum ratio, the measurement is disregarded. This procedure, a kind of deconvolution of the phase propagation imprint, is expected to leave nearly untouched the attenuation signature of seismic traces we are interested in. Such refined measurement approach based on the spectral ratio method has been applied to the real active seismic SERAPIS database providing us a reasonable dataset of 11,873 differential t* measurements (dt*). These data are used for imaging anelastic properties of Campi Flegrei caldera through a linearized, iterative, damped attenuation tomography. Based on configuration of sources and receivers, an attenuating volume as large as 13 x 13 x 1.5 km3 has been imaged. The tomography, with a resolution of 1 km in the horizontal directions and 0.5 km in the vertical direction, allowed to image important features whose reliability has been assessed by means of a proper resolution study. Mainly, the off-shore part of Campi Flegrei caldera turns out to be characterized by an average QP about 70, interpreted as water-saturated volcanic and marine sediments. An arc-like, low-QP structure at 0.5-1 km depths well matches the buried rim of Campi Flegrei caldera, already imaged by previous geophysical investigation studies. The retrieved anelastic properties lead to interpret the rim of caldera as a densely fractured, fluid-saturated rock volume. Several high-QP bodies, overlapping submerged volcanic edifices as Miseno Bank and Pentapalummo Bank, are interpreted as the combination of consolidated volcanic materials and magma-cooled material. Finally, the spatial, heterogeneous distribution of high- and low-QP bodies in the inner caldera is correlated with low-VP values and may reflect either differences in the percentage of fluid saturation of sediments or the presence of vapor state fluids beneath fumarole manifestations.

Hydrogeologic framework of the middle San Pedro watershed, southeastern Arizona

USGS Publications Warehouse

Dickinson, Jesse; Kennedy, Jeffrey R.; Pool, D.R.; Cordova, Jeffrey T.; Parker, John T.; Macy, J.P.; Thomas, Blakemore

2010-01-01

Water managers in rural Arizona are under increasing pressure to provide sustainable supplies of water despite rapid population growth and demands for environmental protection. This report describes the results of a study of the hydrogeologic framework of the middle San Pedro watershed. The components of this report include: (1) a description of the geologic setting and depositional history of basin fill sediments that form the primary aquifer system, (2) updated bedrock altitudes underlying basin fill sediments calculated using a subsurface density model of gravity data, (3) delineation of hydrogeologic units in the basin fill using lithologic descriptions in driller's logs and models of airborne electrical resistivity data, (4) a digital three-dimensional (3D) hydrogeologic framework model (HFM) that represents spatial extents and thicknesses of the hydrogeologic units (HGUs), and (5) description of the hydrologic properties of the HGUs. The lithologic interpretations based on geophysical data and unit thickness and extent of the HGUs included in the HFM define potential configurations of hydraulic zones and parameters that can be incorporated in groundwater-flow models. The hydrogeologic framework comprises permeable and impermeable stratigraphic units: (1) bedrock, (2) sedimentary rocks predating basin-and-range deformation, (3) lower basin fill, (4) upper basin fill, and (5) stream alluvium. The bedrock unit includes Proterozoic to Cretaceous crystalline rocks, sedimentary rocks, and limestone that are relatively impermeable and poor aquifers, except for saturated portions of limestone. The pre-basin-and-range sediments underlie the lower basin fill but are relatively impermeable owing to cementation. However, they may be an important water-bearing unit where fractured. Alluvium of the lower basin fill, the main water-bearing unit, was deposited in the structural trough between the uplifted ridges of bedrock and (or) pre-basin-and-range sediments. Alluvium of the upper basin fill may be more permeable than the lower basin fill, but it is generally unsaturated in the study area. The lower basin fill stratigraphic unit was delineated into three HGUs on the basis of lithologic descriptions in driller?s logs and one-dimensional (1D) electrical models of airborne transient electromagnetic (TEM) surveys. The interbedded lower basin fill (ILBF) HGU represents an upper sequence having resistivity values between 5 and 40 ohm-m identified as interbedded sand, gravel, and clay in driller?s logs. Below this upper sequence, fine-grained lower basin fill (FLBF) HGU represents a thick silt and clay sequence having resistivity values between 5 and 20 ohm-m. Within the coarse-grained lower basin fill (CLBF) HGU, which underlies the silt and clay of the FLBF, the resistivity values on logs and 1D models increase to several hundred ohm-m and are highly variable within sand and gravel layers. These sequences match distinct resistivity and lithologic layers identified by geophysical logs in the adjacent Sierra Vista subwatershed, suggesting that these sequences are laterally continuous within both the Benson and Sierra Vista subwatersheds in the Upper San Pedro Basin. A subsurface density model based on gravity data was constructed to identify the top of bedrock and structures that may affect regional groundwater flow. The subsurface density model contains six layers having uniform density values, which are assigned on the basis of geophysical logs. The density values for the layers range between 1.65 g/cm3 for unsaturated sediments near the land surface and 2.67 g/cm3 for bedrock. Major features include three subbasins within the study area, the Huachuca City subbasin, the Tombstone subbasin, and the Benson subbasin, which have no expression in surface topography or lithology. Bedrock altitudes from the subsurface density model defined top altitudes of the bedrock HGU. The HFM includes the following HGUs in ascending stratigr

Strengthening mechanism of cemented hydrate-bearing sand at microscales

NASA Astrophysics Data System (ADS)

Yoneda, Jun; Jin, Yusuke; Katagiri, Jun; Tenma, Norio

2016-07-01

On the basis of hypothetical particle-level mechanisms, several constitutive models of hydrate-bearing sediments have been proposed previously for gas production. However, to the best of our knowledge, the microstructural large-strain behaviors of hydrate-bearing sediments have not been reported to date because of the experimental challenges posed by the high-pressure and low-temperature testing conditions. Herein, a novel microtriaxial testing apparatus was developed, and the mechanical large-strain behavior of hydrate-bearing sediments with various hydrate saturation values (Sh = 0%, 39%, and 62%) was analyzed using microfocus X-ray computed tomography. Patchy hydrates were observed in the sediments at Sh = 39%. The obtained stress-strain relationships indicated strengthening with increasing hydrate saturation and a brittle failure mode of the hydrate-bearing sand. Localized deformations were quantified via image processing at the submillimeter and micrometer scale. Shear planes and particle deformation and/or rotation were detected, and the shear band thickness decreased with increasing hydrate saturation.

Failure Mechanism of Cemented Hydrate-bearing Sand at Microscales

NASA Astrophysics Data System (ADS)

Yoneda, J.; Jin, Y.; Katagiri, J.; Tenma, N.

2016-12-01

On the basis of hypothetical particle-level mechanisms, several constitutive models of hydrate-bearing sediments have been proposed previously for gas production. However, to the best of our knowledge, the microstructural large-strain behaviors of hydrate-bearing sediments has not been reported to date because of the experimental challenges posed by the high-pressure and low-temperature testing conditions. Herein, as a part of a Japanese National hydrate research program (MH21, funded by METI), a novel microtriaxial testing apparatus was developed, and the mechanical large strain behavior of hydrate-bearing sediments with various hydrate saturation values (Sh = 0%, 39%, and 62%) were analyzed using microfocus X-ray computed tomography. Patchy hydrates were observed in the sediments at Sh = 39%. The obtained stress-strain relationships indicated strengthening with increasing hydrate saturation and a brittle failure mode of the hydrate-bearing sand. Localized deformations were quantified via image processing at the submillimeter and micrometer scale. Shear planes and particle deformation and/or rotation were detected, and the shear band thickness decreased with increasing hydrate saturation.

Investigating and predicting landslides using a rainfall runoff model in Norway

NASA Astrophysics Data System (ADS)

Kråbøl, Eline; Skaugen, Thomas; Devoli, Graziella; Xu, Chong-Yu

2016-04-01

Landslides are amongst the most destructive natural hazards, causing damage to infrastructures, such as roads, railroads and houses, and can, in a worst-case scenario, take lives. A better understanding of the triggering processes of landslides are important as it enables us to perform better forecasts, improve mapping of zones with landslide risk and carry out mitigation measures. In this study, a parameter-parsimonious rainfall-runoff model, DDD (Distance Distribution Dynamics), is used to simulate the hydrological conditions for rainfall-induced landslide events. The model estimates the capacity of the subsurface reservoir at different levels of saturation and predicts overland flow. The subsurface in the DDD has a 2-D representation in that it calculates the saturated and unsaturated soil moisture along a hillslope representing the entire catchment in question. In this study, 50 landslide events in 10 catchments in Southern Norway are investigated. Characteristics of the subsurface states, before, during and after the landslide are analysed for the whole catchment and at three points (lower, middle and upper part) of the hillslope. Preliminary results show that the hysteretic loop of storage and discharge follow complex clockwise and anti-clockwise patterns. Anti-clockwise loops occur more frequent, except for the middle part of the hillslope. In the upper part of the hillslope, anti-clockwise loop occur almost exclusively (94 %). Evaluated for the entire catchment, 57 % of the landslide events occurred at maximum saturation, while 77 % of the events occurred at saturation above 80 %. We found the majority of the landslide events to be associated with the rising limb and the top of the hysteretic curve with 64 % and 17 %, respectively. Overland flow was found for 68 % of the events.

Utilizing of 2-D resistivity with geotechnical method for sediment mapping in Sungai Batu, Kedah

NASA Astrophysics Data System (ADS)

Taqiuddin, Z. M.; Rosli, S.; Nordiana, M. M.; Azwin, I. N.; Mokhtar, S.

2017-07-01

Sungai Batu is Lembah Bujang subdistrict, located at northern region of Peninsular Malaysia, recognized as an international cultural and commercial crossroad for 2000 years ago, and recorded as the oldest archaeological site in southeast Asia. The discovering of iron smelting area (1st-4th century) shows the evidence of important iron industry in Malay Peninsular to others civilization. Nowadays, a lot of interdisciplinary research was conducted in this area including geophysical prospect to understand the subsurface profile for this locality. Geophysical approach such as 2-D resistivity was performed with the main objective is to identify sediment deposit for this area. Three 2-D resistivity survey lines were design across borehole and data acquired using ABEM SAS4000 system with Pole-dipole array using 2.5 m minimum electrode spacing. The data obtained was process using Res2Dinv software to produce inversion model and Surfer10 software used for interpretation and correlation with respective borehole record. The 2-D resistivity inversion model shows that, the area dominated by clay soil with resistivity values of <50 Ωm while high resistivity values of >500 Ωm interpreted as hard layer. The saturated zone (<100 Ωm) were identified at depth of >25 m which consider large volume of soil deposit during sedimentation process. The correlation with the borehole record shows that clay profile distributed at depth of >20 m. The present of shale in certain borehole record indicate that the environment deposit is clam/stagnant water condition during the formation process which suspected controlled by the deposition process from the land deposit.

A simple pore water hydrogen diffusion syringe sampler

USGS Publications Warehouse

Vroblesky, D.A.; Chapelle, F.H.; Bradley, P.M.

2007-01-01

Molecular hydrogen (H2) is an important intermediate product and electron donor in microbial metabolism. Concentrations of dissolved H 2 are often diagnostic of the predominant terminal electron-accepting processes in ground water systems or aquatic sediments. H2 concentrations are routinely measured in ground water monitoring wells but are rarely measured in saturated aquatic sediments due to a lack of simple and practical sampling methods. This report describes the design and development (including laboratory and field testing) of a simple, syringe-based H 2 sampler in (1) saturated, riparian sediments, (2) surface water bed sediments, and (3) packed intervals of a fractured bedrock borehole that are inaccessible by standard pumped methods. ?? 2007 National Ground Water Association.

Velocity ratio and its application to predicting velocities

USGS Publications Warehouse

Lee, Myung W.

2003-01-01

The velocity ratio of water-saturated sediment derived from the Biot-Gassmann theory depends mainly on the Biot coefficient?a property of dry rock?for consolidated sediments with porosity less than the critical porosity. With this theory, the shear moduli of dry sediments are the same as the shear moduli of water-saturated sediments. Because the velocity ratio depends on the Biot coefficient explicitly, Biot-Gassmann theory accurately predicts velocity ratios with respect to differential pressure for a given porosity. However, because the velocity ratio is weakly related to porosity, it is not appropriate to investigate the velocity ratio with respect to porosity (f). A new formulation based on the assumption that the velocity ratio is a function of (1?f)n yields a velocity ratio that depends on porosity, but not on the Biot coefficient explicitly. Unlike the Biot-Gassmann theory, the shear moduli of water-saturated sediments depend not only on the Biot coefficient but also on the pore fluid. This nonclassical behavior of the shear modulus of water-saturated sediment is speculated to be an effect of interaction between fluid and the solid matrix, resulting in softening or hardening of the rock frame and an effect of velocity dispersion owing to local fluid flow. The exponent n controls the degree of softening/hardening of the formation. Based on laboratory data measured near 1 MHz, this theory is extended to include the effect of differential pressure on the velocity ratio by making n a function of differential pressure and consolidation. However, the velocity dispersion and anisotropy are not included in the formulation.

Sources of suspended sediment in the Lower Roanoke River, NC

NASA Astrophysics Data System (ADS)

Jalowska, A. M.; McKee, B. A.; Rodriguez, A. B.; Laceby, J. P.

2015-12-01

The Lower Roanoke River, NC, extends 220 km from the fall line to the bayhead delta front in the Albemarle Sound. The Lower Roanoke is almost completely disconnected from the upper reaches by a series of dams, with the furthest downstream dam located at the fall line. The dams effectively restrict the suspended sediment delivery from headwaters, making soils and sediments from the Lower Roanoke River basin, the sole source of suspended sediment. In flow-regulated rivers, bank erosion, especially mass wasting, is the major contributor to the suspended matter. Additional sources of the suspended sediment considered in this study are river channel, surface soils, floodplain surface sediments, and erosion of the delta front and prodelta. Here, we examine spatial and temporal variations in those sources. This study combined the use of flow and grain size data with a sediment fingerprinting method, to examine the contribution of surface and subsurface sediments to the observed suspended sediment load along the Lower Roanoke River. The fingerprinting method utilized radionuclide tracers 210Pb (natural atmospheric fallout), and 137Cs (produced by thermonuclear bomb testing). The contributions of surface and subsurface sources to the suspended sediment were calculated with 95% confidence intervals using a Monte-Carlo numerical mixing model. Our results show that with decreasing river slope and changing hydrography along the river, the contribution of surface sediments increases and becomes a main source of sediments in the Roanoke bayhead delta. At the river mouth, the surface sediment contribution decreases and is replaced by sediments eroded from the delta front and prodelta. The area of high surface sediment contribution is within the middle and upper parts of the delta, which are considered net depositional. Our study demonstrates that floodplains, often regarded to be a sediment sink, are also a sediment source, and they should be factored into sediment, carbon and nutrient budgets.

Point-of-care instrument for monitoring tissue health during skin graft repair

NASA Astrophysics Data System (ADS)

Gurjar, R. S.; Seetamraju, M.; Zhang, J.; Feinberg, S. E.; Wolf, D. E.

2011-06-01

We have developed the necessary theoretical framework and the basic instrumental design parameters to enable mapping of subsurface blood dynamics and tissue oxygenation for patients undergoing skin graft procedures. This analysis forms the basis for developing a simple patch geometry, which can be used to map by diffuse optical techniques blood flow velocity and tissue oxygenation as a function of depth in subsurface tissue.skin graft, diffuse correlation analysis, oxygen saturation.

Microbial diversity in Cenozoic sediments recovered from the Lomonosov Ridge in the Central Arctic basin.

PubMed

Forschner, Stephanie R; Sheffer, Roberta; Rowley, David C; Smith, David C

2009-03-01

The current understanding of microbes inhabiting deeply buried marine sediments is based largely on samples collected from continental shelves in tropical and temperate latitudes. The geographical range of marine subsurface coring was expanded during the Integrated Ocean Drilling Program Arctic Coring Expedition (IODP ACEX). This expedition to the ice-covered central Arctic Ocean successfully cored the entire 428 m sediment stack on the Lomonosov Ridge during August and September 2004. The recovered cores vary from siliciclastic sediment low in organic carbon (< 0.2%) to organic rich ( approximately 3%) black sediments that rapidly accumulated in the early middle Eocene. Three geochemical environments were characterized based on chemical analyses of porewater: an upper ammonium oxidation zone, a carbonate dissolution zone and a deep (> 200 m below sea floor) sulfate reduction zone. The diversity of microbes within each zone was assessed using 16S rRNA phylogenetic markers. Bacterial 16S rRNA genes were successfully amplified from each of the biogeochemical zones, while archaea was only amplified from the deep sulfate reduction zone. The microbial communities at each zone are phylogenetically different and are most closely related to those from other deep subsurface environments.

Hydrocarbon composition and concentrations in the Gulf of Mexico sediments in the 3 years following the Macondo well blowout.

PubMed

Babcock-Adams, Lydia; Chanton, Jeffrey P; Joye, Samantha B; Medeiros, Patricia M

2017-10-01

In April of 2010, the Macondo well blowout in the northern Gulf of Mexico resulted in an unprecedented release of oil into the water column at a depth of approximately 1500 m. A time series of surface and subsurface sediment samples were collected to the northwest of the well from 2010 to 2013 for molecular biomarker and bulk carbon isotopic analyses. While no clear trend was observed in subsurface sediments, surface sediments (0-3 cm) showed a clear pattern with total concentrations of n-alkanes, unresolved complex mixture (UCM), and petroleum biomarkers (terpanes, hopanes, steranes) increasing from May to September 2010, peaking in late November 2010, and strongly decreasing in the subsequent years. The peak in hydrocarbon concentrations were corroborated by higher organic carbon contents, more depleted Δ 14 C values and biomarker ratios similar to those of the initial MC252 crude oil reported in the literature. These results indicate that at least part of oil discharged from the accident sedimented to the seafloor in subsequent months, resulting in an apparent accumulation of hydrocarbons on the seabed by the end of 2010. Sediment resuspension and transport or biodegradation may account for the decrease in sedimented oil quantities in the years following the Macondo well spill. Copyright © 2017 Elsevier Ltd. All rights reserved.

Do Pleistocene Glacial-Interglacial Cycles Control Methane Hydrate Formation? An Example from Green Canyon, Gulf of Mexico

NASA Astrophysics Data System (ADS)

Oryan, B.; Malinverno, A.; Goldberg, D.; Fortin, W.

2017-12-01

Well GC955-H was drilled in the Green Canyon region under the Gulf of Mexico Gas Hydrates Joint Industry Project in 2009. Logging-while-drilling resistivity logs obtained at the well indicate that the saturation of gas hydrate varies between high and low values in an alternating fashion. This trend is observed from 180 to 360mbsf, depths that correspond to the Late Pleistocene. Similar gas hydrate saturation patterns have been observed in other Gulf of Mexico locations (Walker Ridge sites WR313-G and 313-H) in Late Pleistocene sediments. Our hypothesis is that these variations in saturation can be explained by sea level changes through time during glacial-interglacial cycles. A higher amount of organic matter is deposited and buried in the sediment column during glacial intervals when sea level is low. Microbes in the sediment column degrade organic matter and produce methane gas as a byproduct. Higher availability of organic matter in the sediment column can increase the concentration of methane in the sediment pore water and in turn lead to the formation of gas hydrate. We use a time-dependent numerical model of the formation of gas hydrate to test this hypothesis. The model predicts the volume and distribution of gas hydrates using mass balance equations. Model inputs include in situ porosity determined from bulk density logs; local thermal gradient estimated from the depth of the bottom of the gas hydrate stability zone in proximity to the well; and sedimentation rate determined using the biostratigraphy of an industry well in the vicinity of GC955-H. Initial results show a good match between gas hydrate saturation predicted by the model and resistivity logs obtained in the well. We anticipate that this correlation will establish whether a causal link exists between the saturation of gas hydrate in this reservoir and glacioeustatic sea level changes in the Late Pleistocene.

A composite numerical model for assessing subsurface transport of oily wastes and chemical constituents

NASA Astrophysics Data System (ADS)

Panday, S.; Wu, Y. S.; Huyakorn, P. S.; Wade, S. C.; Saleem, Z. A.

1997-02-01

Subsurface fate and transport models are utilized to predict concentrations of chemicals leaching from wastes into downgradient receptor wells. The contaminant concentrations in groundwater provide a measure of the risk to human health and the environment. The level of potential risk is currently used by the U.S. Environmental Protection Agency to determine whether management of the wastes should conform to hazardous waste management standards. It is important that the transport and fate of contaminants is simulated realistically. Most models in common use are inappropriate for simulating the migration of wastes containing significant fractions of nonaqueous-phase liquids (NAPLs). The migration of NAPL and its dissolved constituents may not be reliably predicted using conventional aqueous-phase transport simulations. To overcome this deficiency, an efficient and robust regulatory assessment model incorporating multiphase flow and transport in the unsaturated and saturated zones of the subsurface environment has been developed. The proposed composite model takes into account all of the major transport processes including infiltration and ambient flow of NAPL, entrapment of residual NAPL, adsorption, volatilization, degradation, dissolution of chemical constituents, and transport by advection and hydrodynamic dispersion. Conceptually, the subsurface is treated as a composite unsaturated zone-saturated zone system. The composite simulator consists of three major interconnected computational modules representing the following components of the migration pathway: (1) vertical multiphase flow and transport in the unsaturated zone; (2) areal movement of the free-product lens in the saturated zone with vertical equilibrium; and (3) three-dimensional aqueous-phase transport of dissolved chemicals in ambient groundwater. Such a composite model configuration promotes computational efficiency and robustness (desirable for regulatory assessment applications). Two examples are presented to demonstrate the model verification and a site application. Simulation results obtained using the composite modeling approach are compared with a rigorous numerical solution and field observations of crude oil saturations and plume concentrations of total dissolved organic carbon at a spill site in Minnesota, U.S.A. These comparisons demonstrate the ability of the present model to provide realistic depiction of field-scale situations.

Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments.

PubMed

Laverock, Bonnie; Smith, Cindy J; Tait, Karen; Osborn, A Mark; Widdicombe, Steve; Gilbert, Jack A

2010-12-01

Bioturbation is a key process in coastal sediments, influencing microbially driven cycling of nutrients as well as the physical characteristics of the sediment. However, little is known about the distribution, diversity and function of the microbial communities that inhabit the burrows of infaunal macroorganisms. In this study, terminal-restriction fragment length polymorphism analysis was used to investigate variation in the structure of bacterial communities in sediment bioturbated by the burrowing shrimp Upogebia deltaura or Callianassa subterranea. Analyses of 229 sediment samples revealed significant differences between bacterial communities inhabiting shrimp burrows and those inhabiting ambient surface and subsurface sediments. Bacterial communities in burrows from both shrimp species were more similar to those in surface-ambient than subsurface-ambient sediment (R=0.258, P<0.001). The presence of shrimp was also associated with changes in bacterial community structure in surrounding surface sediment, when compared with sediments uninhabited by shrimp. Bacterial community structure varied with burrow depth, and also between individual burrows, suggesting that the shrimp's burrow construction, irrigation and maintenance behaviour affect the distribution of bacteria within shrimp burrows. Subsequent sequence analysis of bacterial 16S rRNA genes from surface sediments revealed differences in the relative abundance of bacterial taxa between shrimp-inhabited and uninhabited sediments; shrimp-inhabited sediment contained a higher proportion of proteobacterial sequences, including in particular a twofold increase in Gammaproteobacteria. Chao1 and ACE diversity estimates showed that taxon richness within surface bacterial communities in shrimp-inhabited sediment was at least threefold higher than that in uninhabited sediment. This study shows that bioturbation can result in significant structural and compositional changes in sediment bacterial communities, increasing bacterial diversity in surface sediments and resulting in distinct bacterial communities even at depth within the burrow. In an area of high macrofaunal abundance, this could lead to alterations in the microbial transformations of important nutrients at the sediment-water interface.

Geomorphic field experiment to quantify grain size and biotic influence on riverbed sedimentation dynamics in a dry-season reservoir, Russian River, CA

NASA Astrophysics Data System (ADS)

Florsheim, J. L.; Ulrich, C.; Hubbard, S. S.; Borglin, S. E.; Rosenberry, D. O.

2013-12-01

An important problem in geomorphology is to differentiate between abiotic and biotic fine sediment deposition on coarse gravel river beds because of the potential for fine sediment to infiltrate and clog the pore space between gravel clasts. Infiltration of fines into gravel substrate is significant because it may reduce permeability; therefore, differentiation of abiotic vs. biotic sediment helps in understanding the causes of such changes. We conducted a geomorphic field experiment during May to November 2012 in the Russian River near Wohler, CA, to quantify biotic influence on riverbed sedimentation in a small temporary reservoir. The reservoir is formed upstream of a small dam inflated during the dry season to enhance water supply pumping from the aquifer below the channel; however, some flow is maintained in the reservoir to facilitate fish outmigration. In the Russian River field area, sediment transport dynamics during storm flows prior to dam inflation created an alternate bar-riffle complex with a coarser gravel surface layer over the relatively finer gravel subsurface. The objective of our work was to link grain size distribution and topographic variation to biotic and abiotic sediment deposition dynamics in this field setting where the summertime dam annually increases flow depth and inundates the bar surfaces. The field experiment investigated fine sediment deposition over the coarser surface sediment on two impounded bars upstream of the reservoir during an approximately five month period when the temporary dam was inflated. The approach included high resolution field surveys of topography, grain size sampling and sediment traps on channel bars, and laboratory analyses of grain size distributions and loss on ignition (LOI) to determine biotic content. Sediment traps were installed at six sites on bars to measure sediment deposited during the period of impoundment. Preliminary results show that fine sediment deposition occurred at all of the sample sites, and is spatially variable--likely influenced by topographic differences that moderate flow over the bars. Traps initially filled with coarse gravel from the bar's surface trapped more fine sediment than traps initially filled with material from the bar's subsurface sediment, suggesting that a gravel bar's armor layer may enhance the source of material available to infiltrate into the channel substrate. LOI analysis indicates that both surface and subsurface samples have organic content ranging between 2 and 4%, following winter storm flows prior to impoundment. In contrast, samples collected after the 5-month impoundment have higher organic content ranging between 5 and 11%. This work aids in differentiating between abiotic and biotic fine sediment deposition in order to understand their relative potential for clogging gravel substrate.

Exploring Genomic Diversity Using Metagenomics of Deep-Sea Subsurface Microbes from the Louisville Seamount and the South Pacific Gyre

NASA Astrophysics Data System (ADS)

Tully, B. J.; Sylvan, J. B.; Heidelberg, J. F.; Huber, J. A.

2014-12-01

There are many limitations involved with sampling microbial diversity from deep-sea subsurface environments, ranging from physical sample collection, low microbial biomass, culturing at in situ conditions, and inefficient nucleic acid extractions. As such, we are continually modifying our methods to obtain better results and expanding what we know about microbes in these environments. Here we present analysis of metagenomes sequences from samples collected from 120 m within the Louisville Seamount and from the top 5-10cm of the sediment in the center of the south Pacific gyre (SPG). Both systems are low biomass with ~102 and ~104 cells per cm3 for Louisville Seamount samples analyzed and the SPG sediment, respectively. The Louisville Seamount represents the first in situ subseafloor basalt and the SPG sediments represent the first in situ low biomass sediment microbial metagenomes. Both of these environments, subseafloor basalt and sediments underlying oligotrophic ocean gyres, represent large provinces of the seafloor environment that remain understudied. Despite the low biomass and DNA generated from these samples, we have generated 16 near complete genomes (5 from Louisville and 11 from the SPG) from the two metagenomic datasets. These genomes are estimated to be between 51-100% complete and span a range of phylogenetic groups, including the Proteobacteria, Actinobacteria, Firmicutes, Chloroflexi, and unclassified bacterial groups. With these genomes, we have assessed potential functional capabilities of these organisms and performed a comparative analysis between the environmental genomes and previously sequenced relatives to determine possible adaptations that may elucidate survival mechanisms for these low energy environments. These methods illustrate a baseline analysis that can be applied to future metagenomic deep-sea subsurface datasets and will help to further our understanding of microbiology within these environments.

Extraction of Seabed/Subsurface Features in a Potential CO2 Sequestration Site in the Southern Baltic Sea, Using Wavelet Transform of High-resolution Sub-Bottom Profiler Data

NASA Astrophysics Data System (ADS)

Tegowski, J.; Zajfert, G.

2014-12-01

Carbon Capture & Storage (CCS) efficiently prevents the release of anthropogenic CO2 into the atmosphere. We investigate a potential site in the Polish Sector of the Baltic Sea (B3 field site), consisting in a depleted oil and gas reservoir. An area ca. 30 x 8 km was surveyed along 138 acoustic transects, realised from R/V St. Barbara in 2012 and combining multibeam echosounder, sidescan sonar and sub-bottom profiler. Preparation of CCS sites requires accurate knowledge of the subsurface structure of the seafloor, in particular deposit compactness. Gas leaks in the water column were monitored, along with the structure of upper sediment layers. Our analyses show the shallow sub-seabed is layered, and quantified the spatial distribution of gas diffusion chimneys and seabed effusion craters. Remote detection of gas-containing surface sediments can be rather complex if bubbles are not emitted directly into the overlying water and thus detectable acoustically. The heterogeneity of gassy sediments makes conventional bottom sampling methods inefficient. Therefore, we propose a new approach to identification, mapping, and monitoring of potentially gassy surface sediments, based on wavelet analysis of echo signal envelopes of a chirp sub-bottom profiler (EdgeTech SB-0512). Each echo envelope was subjected to wavelet transformation, whose coefficients were used to calculate wavelet energies. The set of echo envelope parameters was input to fuzzy logic and c-means algorithms. The resulting classification highlights seafloor areas with different subsurface morphological features, which can indicate gassy sediments. This work has been conducted under EC FP7-CP-IP project No. 265847: Sub-seabed CO2 Storage: Impact on Marine Ecosystems (ECO2).

Microbiology: A microbial arsenic cycle in a salt-saturated, extreme environment

USGS Publications Warehouse

Oremland, R.S.; Kulp, T.R.; Blum, J.S.; Hoeft, S.E.; Baesman, S.; Miller, L.G.; Stolz, J.F.

2005-01-01

Searles Lake is a salt-saturated, alkaline brine unusually rich in the toxic element arsenic. Arsenic speciation changed from arsenate [As(V)] to arsenite [As(III)] with sediment depth. Incubated anoxic sediment slurries displayed dissimilatory As(V)-reductase activity that was markedly stimulated by H2 or sulfide, whereas aerobic slurries had rapid As(III)-oxidase activity. An anaerobic, extremely haloalkaliphilic bacterium was isolated from the sediment that grew via As(V) respiration, using either lactate or sulfide as its electron donor. Hence, a full biogeochemical cycle of arsenic occurs in Searles Lake, driven in part by inorganic electron donors.

Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sobecky, Patricia A.

2015-04-06

In this project, inter-disciplinary research activities were conducted in collaboration among investigators at The University of Alabama (UA), Georgia Institute of Technology (GT), Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), the DOE Joint Genome Institute (JGI), and the Stanford Synchrotron Radiation Light source (SSRL) to: (i) confirm that phosphatase activities of subsurface bacteria in Area 2 and 3 from the Oak Ridge Field Research Center result in solid U-phosphate precipitation in aerobic and anaerobic conditions; (ii) investigate the eventual competition between uranium biomineralization via U-phosphate precipitation and uranium bioreduction; (iii) determine subsurface microbial community structure changes of Areamore » 2 soils following organophosphate amendments; (iv) obtain the complete genome sequences of the Rahnella sp. Y9-602 and the type-strain Rahnella aquatilis ATCC 33071 isolated from these soils; (v) determine if polyphosphate accumulation and phytate hydrolysis can be used to promote U(VI) biomineralization in subsurface sediments; (vi) characterize the effect of uranium on phytate hydrolysis by a new microorganism isolated from uranium-contaminated sediments; (vii) utilize positron-emission tomography to label and track metabolically-active bacteria in soil columns, and (viii) study the stability of the uranium phosphate mineral product. Microarray analyses and mineral precipitation characterizations were conducted in collaboration with DOE SBR-funded investigators at LBNL. Thus, microbial phosphorus metabolism has been shown to have a contributing role to uranium immobilization in the subsurface.« less

Hydraulic Experiments for Determination of In-situ Hydraulic Conductivity of Submerged Sediments

PubMed Central

Lee, Bong-Joo; Lee, Ji-Hoon; Yoon, Heesung; Lee, Eunhee

2015-01-01

A new type of in-situ hydraulic permeameter was developed to determine vertical hydraulic conductivity (VHC) of saturated sediments from hydraulic experiments using Darcy's law. The system allows water to move upward through the porous media filled in the permeameter chamber driven into sediments at water-sediment interface. Darcy flux and hydraulic gradient can be measured using the system, and the VHC can be determined from the relationship between them using Darcy's law. Evaluations in laboratory and in field conditions were performed to see if the proposed permeameter give reliable and valid measures of the VHC even where the vertical flow at water-sediment interface and fluctuation of water stage exist without reducing the accuracy of the derived VHC. Results from the evaluation tests indicate that the permeameter proposed in this study can be used to measure VHC of saturated sandy sediments at water-sediment interface in stream and marine environment with high accuracy. PMID:25604984

Partitioning and interfacial tracers for differentiating NAPL entrapment configuration: column-scale investigation.

PubMed

Dai, D; Barranco, F T; Illangasekare, T H

2001-12-15

Research on the use of partitioning and interfacial tracers has led to the development of techniques for estimating subsurface NAPL amount and NAPL-water interfacial area. Although these techniques have been utilized with some success at field sites, current application is limited largely to NAPL at residual saturation, such as for the case of post-remediation settings where mobile NAPL has been removed through product recovery. The goal of this study was to fundamentally evaluate partitioning and interfacial tracer behavior in controlled column-scale test cells for a range of entrapment configurations varying in NAPL saturation, with the results serving as a determinant of technique efficacy (and design protocol) for use with complexly distributed NAPLs, possibly at high saturation, in heterogeneous aquifers. Representative end members of the range of entrapment configurations observed under conditions of natural heterogeneity (an occurrence with residual NAPL saturation [discontinuous blobs] and an occurrence with high NAPL saturation [continuous free-phase LNAPL lens]) were evaluated. Study results indicated accurate prediction (using measured tracer retardation and equilibrium-based computational techniques) of NAPL amount and NAPL-water interfacial area for the case of residual NAPL saturation. For the high-saturation LNAPL lens, results indicated that NAPL-water interfacial area, but not NAPL amount (underpredicted by 35%), can be reasonably determined using conventional computation techniques. Underprediction of NAPL amount lead to an erroneous prediction of NAPL distribution, as indicated by the NAPL morphology index. In light of these results, careful consideration should be given to technique design and critical assumptions before applying equilibrium-based partitioning tracer methodology to settings where NAPLs are complexly entrapped, such as in naturally heterogeneous subsurface formations.

The role of subsurface flow in hillslope and streambank erosion: A review of status and research needs

USDA-ARS?s Scientific Manuscript database

Sediment is the most common cause of stream impairment. Great progress has been made in understanding processes of soil erosion due to surface runoff and incorporating these in prediction technologies. However, in many landscapes the dominant source of sediment is derived from mass wasting of hillsl...

Effect of alternative surface inlet designs on sediment and phosphorus drainage losses

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine whether modifying open inlets by burying them in gravel capped with 30 cm of sandy clay loam soil or in ve...

Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, T; Fredrickson, Jim K.; Balkwill, David L.

Several strains of Sphingomonas isolated from deep Atlantic coastal plain aquifers at the US Department of Energy Savannah River Site (SRS) near Aiken, SC were shown to degrade a variety of aromatic hydrocarbons in a liquid culture medium. Sphingomonas aromaticivorans strain B0695 was the most versatile of the five strains examined. This strain was able to degrade acenaphthene, anthracene, phenanthrene, 2,3-benzofluorene, 2-methyl naphthalene, 2,3-dimethylnaphthalene, and fluoranthene in the presence of 400 mg l(-1) Tween 80. Studies involving microcosms composed of aquifer sediments showed that S. aromaticivorans B0695 could degrade phenanthrene effectively in sterile sediment and could enhance the rate atmore » which this compound was degraded in nonsterile sediment. These findings indicate that it may be feasible to carry out (or, at least, to enhance) in situ bioremediation of phenanthrene-contaminated soils and subsurface environments with S. aromaticivorans B0695. In contrast, stra in B0695 was unable to degrade fluoranthene in microcosms containing aquifer sediments, even though it readily degraded this polynuclear aromatic hydrocarbon (PAH) in a defined liquid growth medium.« less

Single cell genomic study of Dehalococcoidites in deep sea sediments of Peru Margin 1230

NASA Astrophysics Data System (ADS)

Kaster, A.; Meyer-Blackwell, K.; Spormann, A. M.

2013-12-01

Dehalogenating Chloroflexi, such as Dehalococcoidites Dhc were originally discovered as the key microorganisms mediating reductive dehalogenation of the prevalent groundwater contaminants tetrachloroethene and trichloroethene. Molecular and genomic studies on their key enzymes for energy conservation, reductive dehalogenases rdh, have provided evidence for ubiquitous horizontal gene transfer. A pioneering study by Futagami et al. discovered novel putative rdh phylotypes in sediments from the Pacific, revealing an unknown and surprising abundance of rdh genes in pristine habitats. The frequent detection of Dhc-related 16S rRNA genes from these environments implied the occurrence of dissimilatory dehalorespiration in marine subsurface sediments, however, pristine Dhc could never be linked to this activity. Despite being ubiquitous in those environments, metabolic life style or ecological function of Dhc in the absence of anthropogenic contaminants is still completely unknown. We therefore analyzed a non-contaminated deep sea sediment sample of the Peru Margin 1230 site by a single cell genomic (SGC) approach. We present for the first time data on three single Dhc cells, helping to elucidate their role in the poorly understood oligotrophic marine sub-surface environment.

Structure of Subsurface Sediments in the Scan Basin (Scotia Sea)

NASA Astrophysics Data System (ADS)

Schreider, Al. A.; Schreider, A. A.; Sazhneva, A. E.; Galindo-Zaldivar, J.; Ruano, P.; Maldonado, A.; Martos-Martin, Y.; Lobo, F.

2018-01-01

The structure of sediments in the Scotia Sea is used as a basis for reconstructing the geological history of its bottom in the Late Quaternary. The Scan Basin is one of the main elements of the topography of the southern Scotia Sea. Its formation played a considerable role in the fragmentation of the continent, which included the Bruce and Discovery banks. The main parameters of the sediment layer in the Scan Basin have been reconstructed by the present time, but its top part has not been studied. In this work, we analyze the first data obtained on the R/V Gesperidas with the use of a TOPAS PS 18/40 high-resolution seismic profilograph in 2012. Three layers in the subsurface sediments on the bottom of the Scan Basin were specified for the first time. The mean periods of their deposition in the Late Quaternary were determined as 115000 years for the first, 76000 years for the second, and 59 000 years for the third layer from the surface of the bottom. The duration of the total accumulation period of the three layers is about 250000 years.

NO3 uptake in shallow, oligotrophic, mountain lakes: The influence of elevated NO3 concentrations

USGS Publications Warehouse

Nydick, K.R.; LaFrancois, B.M.; Baron, Jill S.

2004-01-01

Nutrient enrichment experiments were conducted in 1.2-m deep enclosures in 2 shallow, oligotrophic, mountain lakes. 15N-NO3 isotope tracer was used to compare the importance of phytoplankton and benthic compartments (epilithon, surface sediment [epipelon], and subsurface sediment) for NO3 uptake under high and low NO3 conditions. NO3 uptake approached saturation in the high-N lake, but not in the low-N lake. The capacity of phytoplankton and benthic compartments to take up NO3 differed among treatments and between lakes, and depended on water-column nutrient conditions and the history of NO3 availability. Phytoplankton productivity responded strongly to addition of limiting nutrients, and NO3 uptake was related to phytoplankton biomass and photosynthesis. However, more NO3 usually was taken up by benthic compartments (57–92% combined) than by phytoplankton, even though the response of benthic algal biomass to nutrient additions was less pronounced than that of phytoplankton and benthic NO3 uptake was unrelated to benthic algal biomass. In the low-N lake where NO3 uptake was unsaturated, C content or % was related to NO3 uptake in benthic substrates, suggesting that heterotrophic bacterial processes could be important in benthic NO3 uptake. These results suggest that phytoplankton are most sensitive to nutrient additions, but benthic processes are important for NO3 uptake in shallow, oligotrophic lakes.

Enhancement of the complete autotrophic nitrogen removal over nitrite process in a modified single-stage subsurface vertical flow constructed wetland: Effect of saturated zone depth.

PubMed

Huang, Menglu; Wang, Zhen; Qi, Ran

2017-06-01

This study was conducted to explore enhancement of the complete autotrophic nitrogen removal over nitrite (CANON) process in a modified single-stage subsurface vertical flow constructed wetland (VSSF) with saturated zone, and nitrogen transformation pathways in the VSSF treating digested swine wastewater were investigated at four different saturated zone depths (SZDs). SZD significantly affected nitrogen transformation pathways in the VSSF throughout the experiment. As the SZD was 45cm, the CANON process was enhanced most effectively in the system owing to the notable enhancement of anammox. Correspondingly, the VSSF had the best TN removal performance [(76.74±7.30)%] and lower N 2 O emission flux [(3.50±0.22)mg·(m 2 ·h) - 1 ]. It could be concluded that autotrophic nitrogen removal via CANON process could become a primary route for nitrogen removal in the VSSF with optimized microenvironment that developed as a result of the appropriate SZD. Copyright © 2017 Elsevier Ltd. All rights reserved.

Sediment carbon fate in phreatic karst (Part 1): Conceptual model development

NASA Astrophysics Data System (ADS)

Husic, A.; Fox, J.; Agouridis, C.; Currens, J.; Ford, W.; Taylor, C.

2017-06-01

Recent research has paid increased attention to quantifying the fate of carbon pools within fluvial networks, but few, if any, studies consider the fate of sediment organic carbon in fluviokarst systems despite that karst landscapes cover 12% of the earth's land surface. The authors develop a conceptual model of sediment carbon fate in karst terrain with specific emphasis upon phreatic karst conduits, i.e., those located below the groundwater table that have the potential to trap surface-derived sediment and turnover carbon. To assist with their conceptual model development, the authors study a phreatic system and apply a mixture of methods traditional and novel to karst studies, including electrical resistivity imaging, well drilling, instantaneous velocimetry, dye tracing, stage recording, discrete and continuous sediment and water quality sampling, and elemental and stable carbon isotope fingerprinting. Results show that the sediment transport carrying capacity of the phreatic karst water is orders of magnitude less than surface streams during storm-activated periods promoting deposition of fine sediments in the phreatic karst. However, the sediment transport carrying capacity is sustained long after the hydrologic event has ended leading to sediment resuspension and prolonged transport. The surficial fine grained laminae occurs in the subsurface karst system; but unlike surface streams, the light-limited conditions of the subsurface karst promotes constant heterotrophy leading to carbon turnover. The coupling of the hydrological processes leads to a conceptual model that frames phreatic karst as a biologically active conveyor of sediment carbon that recharges degraded organic carbon back to surface streams. For example, fluvial sediment is estimated to lose 30% of its organic carbon by mass during a one year temporary residence within the phreatic karst. It is recommended that scientists consider karst pathways when attempting to estimate organic matter stocks and carbon transformation in fluvial networks.

Effect of subsurface drainage on runoff and sediment yield from an agricultural watershed in western Oregon, U.S.A.

NASA Astrophysics Data System (ADS)

Istok, J. D.; Kling, G. F.

1983-09-01

Rainfall, watershed runoff and suspended-sediment concentrations for three small watersheds (0.46, 1.4 and 6.0 ha in size) were measured continuously for four winter rainfall seasons. The watersheds were fall-planted to winter wheat and were located on the hilly western margins of the Willamette Valley, Oregon. Following two rainfall seasons of data collection, a subsurface drainage system (consisting of a patterned arrangement of 10-cm plastic tubing at a depth of 1.0 m and a spacing of 12 m) was installed on the 1.4-ha watershed (watershed 2). Perched water tables were lowered and seepage was reduced on watershed 2 following the installation of the drainage system. The reductions were quantified with a water-table index (cumulative integrated excess). Watershed runoff and sediment yield from watershed 2 were decreased by ˜65 and ˜55%, respectively. These reductions were estimated from double mass curves and by statistical regression on a set of hydrograph variables. Maximum flow and average flow rates were decreased and the time from the beginning of a storm to the peak flow (lag time) increased. It is concluded that subsurface drainage can be an effective management practice for erosion control in western Oregon.

Where the oil from surface and subsurface plumes deposited during/after Deepwater Horizon oil spill?

NASA Astrophysics Data System (ADS)

Yan, B.

2016-02-01

The Deepwater Horizon (DwH) oil spill released an estimated 4.9 million barrels (about 200 million gallons) of crude oil into the Gulf of Mexico between April 20, 2010 and July 15, 2010. Though Valentine et al. has linked the elevated oil components in some sediments with the subsurface plume, the sites with fallout from the ocean surface plume has not been identified. This piece of information is critical not only for a comprehensive scientific understanding of the ecosystem response and fate of spill-related pollutants, but also for litigation purposes and future spill response and restoration planning. In this study we focus on testing the hypothesis that marine snow from the surface plume were deposited on the sea floor over a broad area. To do so, we use publicly available data generated as part of the ongoing Natural Resource Damage Assessment (NRDA) process to assess the spatial distribution of petroleum hydrocarbons in the water column and deep-ocean sediments of the Gulf of Mexico. Sensitive hydrocarbon markers are used to differentiate hydrocarbons from surface plume, deep subsurface plume, and in-situ burning. Preliminary results suggest the overlapping but different falling sites of these plumes and the sedimentation process was controlled by various biological, chemical, and physical factors.

In situ chemical degradation of DNAPLS in contaminated soils and sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gates, D.D.; Korte, N.E.; Siegrist, R.L.

1996-08-01

An emerging approach to in situ treatment of organic contaminants is chemical degradation. The specific processes discussed in this chapter are in situ chemical oxidation using either hydrogen peroxide (H{sub 2}O{sub 2}) or potassium permanganate (KMnO{sub 4}) and in situ dechlorination of halogenated hydrocarbons using zero-valence base metals such as iron. These technologies are primarily chemical treatment processes, where the treatment goal is to manipulate the chemistry of the subsurface environment in such a manner that the contaminants of interest are destroyed and/or rendered non-toxic. Chemical properties that can be altered include pH, ionic strength, oxidation and reduction potential, andmore » chemical equilibria. In situ contaminant destruction processes alter or destroy contaminants in place and are typically applied to compounds that can be either converted to innocuous species such as CO{sub 2} and water, or can be degraded to species that are non-toxic or amenable to other in situ processes (i.e., bioremediation). With in situ chemical oxidation, the delivery and distribution of chemical reagents are critical to process effectiveness. In contrast, published approaches for the use of zero valence base metals suggest passive approaches in which the metals are used in a permeable reaction wall installed in situ in the saturated zone. Both types of processes are receiving increasing attention and are being applied both in technology demonstration and as final solutions to subsurface contaminant problems. 43 refs., 9 figs., 1 tab.« less

Enhanced Remedial Amendment Delivery to Subsurface Using Shear Thinning Fluid and Aqueous Foam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhong, Lirong; Szecsody, James E.; Oostrom, Martinus

2011-04-23

A major issue with in situ subsurface remediation is the ability to achieve an even spatial distribution of remedial amendments to the contamination zones in an aquifer or vadose zone. Delivery of amendment to the aquifer using shear thinning fluid and to the vadose zone using aqueous foam has the potential to enhance the amendment distribution into desired locations and improve the remediation. 2-D saturated flow cell experiments were conducted to evaluate the enhanced sweeping, contaminant removal, and amendment persistence achieved by shear thinning fluid delivery. Bio-polymer xanthan gum solution was used as the shear thinning fluid. Unsaturated 1-D columnmore » and 2-D flow cell experiments were conducted to evaluate the mitigation of contaminant mobilization, amendment uniform distribution enhancement, and lateral delivery improvement by foam delivery. Surfactant sodium lauryl ether sulfate was used as the foaming agent. It was demonstrated that the shear thinning fluid injection enhanced the fluid sweeping over a heterogeneous system and increased the delivery of remedial amendment into low-permeability zones. The persistence of the amendment distributed into the low-perm zones by the shear thinning fluid was prolonged compared to that of amendment distributed by water injection. Foam delivery of amendment was shown to mitigate the mobilization of highly mobile contaminant from sediments under vadose zone conditions. Foam delivery also achieved more uniform amendment distribution in a heterogeneous unsaturated system, and demonstrated remarkable increasing in lateral distribution of the injected liquid compared to direct liquid injection.« less

Uranium interaction with soil minerals in the presence of co-contaminants: Case Study- subsurface sediments at or below the water table

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gartman, Brandy N.; Qafoku, Nikolla

2016-03-09

Uranium (U) contaminated subsurface systems are common on a global scale mainly because of its essential role in the production of plutonium for nuclear weapons and other nuclear energy and research activities. Studying the behavior and fate of U in these systems is challenging because of heterogeneities of different types (i.e., physical, chemical and mineralogical) and a complex network of often time-dependent hydrological, biological and chemical reactions and processes that occur sequentially or simultaneously, affecting and/or controlling U mobility. A U contaminated site, i.e., the Integrated Field Research Challenge site in Rifle, CO, USA (a former U mill site) ismore » the focus of this discussion. The overall objectives of this chapter are to 1) provide an overview of the contamination levels (U and other co-contaminants) at this field site; 2) review and discuss different aspects of mineral-U contaminant interactions in reduced and oxidized environments, and in the presence of co-contaminants; 3) present results from a systematic macroscopic, microscopic, and spectroscopic study as an example of the current research efforts and the state-of-knowledge in this important research area; and 4) offer insightful conclusive remarks and future research needs about reactions and processes that control U and other contaminants’ fate and behavior under hydraulically saturated conditions. The implications and applications presented in this chapter are valid for U contaminated sites across the world.« less

Simulation of partially saturated - saturated flow in the Caspar Creek E-road groundwater system

Treesearch

Jason C. Fisher

2000-01-01

Abstract - Over the past decade, the U.S. Forest Service has monitored the subsurface hillslope flow of the E-road swale. The swale is located in the Caspar Creek watershed near Fort Bragg, California. In hydrologic year 1990 a logging road was built across the middle section of the hillslope followed by a total clearcut of the area during the following year....

Uranium (VI) transport in saturated heterogeneous media: Influence of kaolinite and humic acid.

PubMed

Chen, Chong; Zhao, Kang; Shang, Jianying; Liu, Chongxuan; Wang, Jin; Yan, Zhifeng; Liu, Kesi; Wu, Wenliang

2018-05-07

Natural aquifers typically exhibit a variety of structural heterogeneities. However, the effect of mineral colloids and natural organic matter on the transport behavior of uranium (U) in saturated heterogeneous media are not totally understood. In this study, heterogeneous column experiments were conducted, and the constructed columns contained a fast-flow domain (FFD) and a slow-flow domain (SFD). The effect of kaolinite, humic acid (HA), and kaolinite/HA mixture on U(VI) retention and release in saturated heterogeneous media was examined. Media heterogeneity significantly influenced U fate and transport behavior in saturated subsurface environment. The presence of kaolinite, HA, and kaolinite/HA enhanced the mobility of U in heterogeneous media, and the mobility of U was the highest in the presence of kaolinite/HA and the lowest in the presence of kaolinite. In the presence of kaolinite, there was no difference in the amount of U released from the FFD and SFD. However, in the presence of HA and kaolinite/HA, a higher amount of U was released from the FFD. The findings in this study showed that medium structure and mineral colloids, as well as natural organic matter in the aqueous phase had significant effects on U transport and fate in subsurface environment. Copyright © 2018 Elsevier Ltd. All rights reserved.

Quantifying microbial activity in deep subsurface sediments using a tritium based hydrognease enzyme assay

NASA Astrophysics Data System (ADS)

Adhikari, R.; Nickel, J.; Kallmeyer, J.

2012-12-01

Microbial life is widespread in Earth's subsurface and estimated to represent a significant fraction of Earth's total living biomass. However, very little is known about subsurface microbial activity and its fundamental role in biogeochemical cycles of carbon and other biologically important elements. Hydrogen is one of the most important elements in subsurface anaerobic microbial metabolism. Heterotrophic and chemoautotrophic microorganisms use hydrogen in their metabolic pathways. They either consume or produce protons for ATP synthesis. Hydrogenase (H2ase) is a ubiquitous intracellular enzyme that catalyzes the interconversion of molecular hydrogen and/or water into protons and electrons. The protons are used for the synthesis of ATP, thereby coupling energy generating metabolic processes to electron acceptors such as CO2 or sulfate. H2ase enzyme targets a key metabolic compound in cellular metabolism therefore the assay can be used as a measure for total microbial activity without the need to identify any specific metabolic process. Using the highly sensitive tritium assay we measured H2ase enzyme activity in the organic-rich sediments of Lake Van, a saline, alkaline lake in eastern Turkey, in marine sediments of the Barents Sea and in deep subseafloor sediments from the Nankai Trough. H2ase activity could be quantified at all depths of all sites but the activity distribution varied widely with depth and between sites. At the Lake Van sites H2ase activity ranged from ca. 20 mmol H2 cm-3d-1 close to the sediment-water interface to 0.5 mmol H2 cm-3d-1 at a depth of 0.8 m. In samples from the Barents Sea H2ase activity ranged between 0.1 to 2.5 mmol H2 cm-3d-1 down to a depth of 1.60 m. At all sites the sulfate reduction rate profile followed the upper part of the H2ase activity profile until sulfate reduction reached the minimum detection limit (ca. 10 pmol cm-3d-1). H2ase activity could still be quantified after the decline of sulfate reduction, indicating that other microbial processes are becoming quantitatively more important. Similarly, H2ase activity could be quantified at greater depths (ca. 400 mbsf) in Nankai Trough sediments. Nankai Trough is one of the world's most geologically active accretionary wedges, where the Philippine Plate is subducting under the southwest of Japan. Due to the transient faulting, huge amounts of energy are liberated that enhance chemical transformations of organic and inorganic matter. An increase in H2ase activity could be observed at greater depth, which suggests that microbial activity is stimulated by the fault activity. Current techniques for the quantification of microbial activity in deep sediments have already reached their physical and technical limits and-in many cases- are still not sensitive enough to quantify extremely low rates of microbial activity. Additional to the quantification of specific processes, estimates of total microbial activity will provide valuable information on energy flux and microbial metabolism in the subsurface biosphere and other low-energy environments as well as help identifying hotspots of microbial activity. The tritium H2ase assay has a potential to become a valuable tool to measure total subsurface microbial activity.

Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface.

PubMed

Wu, Wei-Min; Carley, Jack; Green, Stefan J; Luo, Jian; Kelly, Shelly D; Van Nostrand, Joy; Lowe, Kenneth; Mehlhorn, Tonia; Carroll, Sue; Boonchayanant, Benjaporn; Löfller, Frank E; Watson, David; Kemner, Kenneth M; Zhou, Jizhong; Kitanidis, Peter K; Kostka, Joel E; Jardine, Philip M; Criddle, Craig S

2010-07-01

The effects of nitrate on the stability of reduced, immobilized uranium were evaluated in field experiments at a U.S. Department of Energy site in Oak Ridge, TN. Nitrate (2.0 mM) was injected into a reduced region of the subsurface containing high levels of previously immobilized U(IV). The nitrate was reduced to nitrite, ammonium, and nitrogen gas; sulfide levels decreased; and Fe(II) levels increased then deceased. Uranium remobilization occurred concomitant with nitrite formation, suggesting nitrate-dependent, iron-accelerated oxidation of U(IV). Bromide tracer results indicated changes in subsurface flowpaths likely due to gas formation and/or precipitate. Desorption-adsorption of uranium by the iron-rich sediment impacted uranium mobilization and sequestration. After rereduction of the subsurface through ethanol additions, background groundwater containing high levels of nitrate was allowed to enter the reduced test zone. Aqueous uranium concentrations increased then decreased. Clone library analyses of sediment samples revealed the presence of denitrifying bacteria that can oxidize elemental sulfur, H(2)S, Fe(II), and U(IV) (e.g., Thiobacillus spp.), and a decrease in relative abundance of bacteria that can reduce Fe(III) and sulfate. XANES analyses of sediment samples confirmed changes in uranium oxidation state. Addition of ethanol restored reduced conditions and triggered a short-term increase in Fe(II) and aqueous uranium, likely due to reductive dissolution of Fe(III) oxides and release of sorbed U(VI). After two months of intermittent ethanol addition, sulfide levels increased, and aqueous uranium concentrations gradually decreased to <0.1 microM.

Impact of mercury on denitrification and denitrifying microbial communities in nitrate enrichments of subsurface sediments.

PubMed

Wang, Yanping; Wiatrowski, Heather A; John, Ria; Lin, Chu-Ching; Young, Lily Y; Kerkhof, Lee J; Yee, Nathan; Barkay, Tamar

2013-02-01

The contamination of groundwater with mercury (Hg) is an increasing problem worldwide. Yet, little is known about the interactions of Hg with microorganisms and their processes in subsurface environments. We tested the impact of Hg on denitrification in nitrate reducing enrichment cultures derived from subsurface sediments from the Oak Ridge Integrated Field Research Challenge site, where nitrate is a major contaminant and where bioremediation efforts are in progress. We observed an inverse relationship between Hg concentrations and onset and rates of denitrification in nitrate enrichment cultures containing between 53 and 1.1 μM of inorganic Hg; higher Hg concentrations increasingly extended the time to onset of denitrification and inhibited denitrification rates. Microbial community complexity, as indicated by terminal restriction fragment length polymorphism (tRFLP) analysis of the 16S rRNA genes, declined with increasing Hg concentrations; at the 312 nM Hg treatment, a single tRFLP peak was detected representing a culture of Bradyrhizobium sp. that possessed the merA gene indicating a potential for Hg reduction. A culture identified as Bradyrhizobium sp. strain FRC01 with an identical 16S rRNA sequence to that of the enriched peak in the tRFLP patterns, reduced Hg(II) to Hg(0) and carried merA whose amino acid sequence has 97 % identity to merA from the Proteobacteria and Firmicutes. This study demonstrates that in subsurface sediment incubations, Hg may inhibit denitrification and that inhibition may be alleviated when Hg resistant denitrifying Bradyrhizobium spp. detoxify Hg by its reduction to the volatile elemental form.

Compressional Wave Speed and Absorption Measurements in a Saturated Kaolinite-Water Artificial Sediment.

DTIC Science & Technology

OCEAN BOTTOM, ULTRASONIC PROPERTIES), (*UNDERWATER SOUND, SOUND TRANSMISSION), KAOLINITE , ABSORPTION, COMPRESSIVE PROPERTIES, POROSITY, VELOCITY, VISCOELASTICITY, MATHEMATICAL MODELS, THESES, SEDIMENTATION

APPLICATION OF THE ELECTROMAGNETIC BOREHOLE FLOWMETER

EPA Science Inventory

Spatial variability of saturated zone hydraulic properties has important implications with regard to sampling wells for water quality parameters, use of conventional methods to estimate transmissivity, and remedial system design. Characterization of subsurface heterogeneity requ...

Modeling variably saturated multispecies reactive groundwater solute transport with MODFLOW-UZF and RT3D

USGS Publications Warehouse

Bailey, Ryan T.; Morway, Eric D.; Niswonger, Richard G.; Gates, Timothy K.

2013-01-01

A numerical model was developed that is capable of simulating multispecies reactive solute transport in variably saturated porous media. This model consists of a modified version of the reactive transport model RT3D (Reactive Transport in 3 Dimensions) that is linked to the Unsaturated-Zone Flow (UZF1) package and MODFLOW. Referred to as UZF-RT3D, the model is tested against published analytical benchmarks as well as other published contaminant transport models, including HYDRUS-1D, VS2DT, and SUTRA, and the coupled flow and transport modeling system of CATHY and TRAN3D. Comparisons in one-dimensional, two-dimensional, and three-dimensional variably saturated systems are explored. While several test cases are included to verify the correct implementation of variably saturated transport in UZF-RT3D, other cases are included to demonstrate the usefulness of the code in terms of model run-time and handling the reaction kinetics of multiple interacting species in variably saturated subsurface systems. As UZF1 relies on a kinematic-wave approximation for unsaturated flow that neglects the diffusive terms in Richards equation, UZF-RT3D can be used for large-scale aquifer systems for which the UZF1 formulation is reasonable, that is, capillary-pressure gradients can be neglected and soil parameters can be treated as homogeneous. Decreased model run-time and the ability to include site-specific chemical species and chemical reactions make UZF-RT3D an attractive model for efficient simulation of multispecies reactive transport in variably saturated large-scale subsurface systems.

An analytical solution for predicting the transient seepage from a subsurface drainage system

NASA Astrophysics Data System (ADS)

Xin, Pei; Dan, Han-Cheng; Zhou, Tingzhang; Lu, Chunhui; Kong, Jun; Li, Ling

2016-05-01

Subsurface drainage systems have been widely used to deal with soil salinization and waterlogging problems around the world. In this paper, a mathematical model was introduced to quantify the transient behavior of the groundwater table and the seepage from a subsurface drainage system. Based on the assumption of a hydrostatic pressure distribution, the model considered the pore-water flow in both the phreatic and vadose soil zones. An approximate analytical solution for the model was derived to quantify the drainage of soils which were initially water-saturated. The analytical solution was validated against laboratory experiments and a 2-D Richards equation-based model, and found to predict well the transient water seepage from the subsurface drainage system. A saturated flow-based model was also tested and found to over-predict the time required for drainage and the total water seepage by nearly one order of magnitude, in comparison with the experimental results and the present analytical solution. During drainage, a vadose zone with a significant water storage capacity developed above the phreatic surface. A considerable amount of water still remained in the vadose zone at the steady state with the water table situated at the drain bottom. Sensitivity analyses demonstrated that effects of the vadose zone were intensified with an increased thickness of capillary fringe, capillary rise and/or burying depth of drains, in terms of the required drainage time and total water seepage. The analytical solution provides guidance for assessing the capillary effects on the effectiveness and efficiency of subsurface drainage systems for combating soil salinization and waterlogging problems.

Assessing Gas-Hydrate Prospects on the North Slope of Alaska - Theoretical Considerations

USGS Publications Warehouse

Lee, Myung W.; Collett, Timothy S.; Agena, Warren F.

2008-01-01

Gas-hydrate resource assessment on the Alaska North Slope using 3-D and 2-D seismic data involved six important steps: (1) determining the top and base of the gas-hydrate stability zone, (2) 'tying' well log information to seismic data through synthetic seismograms, (3) differentiating ice from gas hydrate in the permafrost interval, (4) developing an acoustic model for the reservoir and seal, (5) developing a method to estimate gas-hydrate saturation and thickness from seismic attributes, and (6) assessing the potential gas-hydrate prospects from seismic data based on potential migration pathways, source, reservoir quality, and other relevant geological information. This report describes the first five steps in detail using well logs and provides theoretical backgrounds for resource assessments carried out by the U.S. Geological Survey. Measured and predicted P-wave velocities enabled us to tie synthetic seismograms to the seismic data. The calculated gas-hydrate stability zone from subsurface wellbore temperature data enabled us to focus our effort on the most promising depth intervals in the seismic data. A typical reservoir in this area is characterized by the P-wave velocity of 1.88 km/s, porosity of 42 percent, and clay volume content of 5 percent, whereas seal sediments encasing the reservoir are characterized by the P-wave velocity of 2.2 km/s, porosity of 32 percent, and clay volume content of 20 percent. Because the impedance of a reservoir without gas hydrate is less than that of the seal, a complex amplitude variation with respect to gas-hydrate saturation is predicted, namely polarity change, amplitude blanking, and high seismic amplitude (a bright spot). This amplitude variation with gas-hydrate saturation is the physical basis for the method used to quantify the resource potential of gas hydrates in this assessment.

Laboratory Study of Quaternary Sediment Resistivity Related to Groundwater Contamination at Mae-Hia Landfill, Mueang District, Chiang Mai Province

NASA Astrophysics Data System (ADS)

Sichan, N.

2007-12-01

This study was aimed to understand the nature of the resistivity value of the sediment when it is contaminated, in order to use the information solving the obscure interpretation in the field. The pilot laboratory experiments were designed to simulate various degree of contamination and degree of saturation then observe the resulting changes in resistivity. The study was expected to get a better understanding of how various physical parameters effect the resistivity values in term of mathematic function. And also expected to apply those obtained function to a practical quantitatively interpretation. The sediment underlying the Mae-Hia Landfill consists of clay-rich material, with interfingerings of colluvium and sandy alluvium. A systematic study identified four kinds of sediment, sand, clayey sand, sandy clay, and clay. Representative sediment and leachate samples were taken from the field and returned to the laboratory. Both the physical and chemical properties of the sediments and leachate were analyzed to delineate the necessary parameters that could be used in Archie's equation. Sediment samples were mixed with various concentration of leachate solutions. Then the resistivity values were measured at various controlled steps in the saturation degree in a well- calibrated six-electrode model resistivity box. The measured resistivity values for sand, clayey sand, sandy clay when fully and partly saturated were collected, then plotted and fitted to Archie's equation, to obtain a mathematical relationship between bulk resistivity, porosity, saturation degree and resistivity of pore fluid. The results fit well to Archie's equation, and it was possible to determine all the unknown parameters representative of the sediment samples. For sand, clayey sand, sandy clay, and clay, the formation resistivity factors (F) are 2.90, 5.77, 7.85, and 7.85 with the products of cementation factor (m) and the pore geometry factors (a) (in term of -am) are 1.49, -1.63, -1.92, -2.24 and the saturation exponents (n) are 2.06, 2.58, 3.52, and 2.46, respectively. These results were used to reinterpret the existing resistivity data of this area. The result of this reinterpretation is a map showing the quantitative distribution of the contaminant plume in the vicinity of the Mae-Hia Landfill.

Evidence for iron-sulfate coupling in salt marsh sediments

NASA Astrophysics Data System (ADS)

Mills, Jennifer; Antler, Gilad; Turchyn, Alexandra

2014-05-01

Organic carbon burial in shallow marine sediments represents an important net sink in the global carbon cycle. Microbially mediated oxidation of organic matter in oxic, suboxic, and anoxic sediments however, prevents the ultimate burial of organic carbon and its removal from the surface of the planet. Although the subsurface transformations of organic carbon have been studied extensively, an enigmatic question remains: when organic matter is deposited, what determines whether it will be buried, reoxidized, or undergo methanogenesis? One hypothesis is that the sulfur cycle, due to the abundance of sulfate in many surface environments, dominates the subsurface oxidation or other fate of organic carbon. However, it has also been suggested that iron may in turn play a key role in determining the behavior of the sulfur cycle. To better understand the controls on these processes, we are using stable isotope and geochemical techniques to explore the microbially mediated oxidation of organic carbon in salt marsh sediments in North Norfolk, UK. In these sediments there is a high supply of organic carbon, iron, and sulfate (from diurnal tidal cycles). Thus these environments may provide insight into the nature of interactions between the carbon, iron, and sulfur cycles. A series of sampling missions was undertaken in the autumn and winter of 2013-2014. In subsurface fluid samples we observe very high ferrous iron concentrations (>1mM), indicative of extended regions of iron reduction (to over 30cm depth). Within these zones of iron reduction we would predict no sulfate reduction, and as expected δ34Ssulfate remains unchanged with depth. However, δ18Osulfate exhibits significant enrichments of up to 5 permil. This decoupling in the sulfur and oxygen isotopes of sulfate is suggestive of a sulfate recycling process in which sulfate is reduced to an intermediate sulfur species and subsequently reoxidized to sulfate. Taken together, these data suggest that microbial assemblages in these salt marsh sediments facilitate a cryptic cycling of sulfur, potentially mediated by iron species in the zone of iron reduction.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Friedmann, S J

Carbon capture and sequestration (CCS) has emerged as a key technology for dramatic short-term reduction in greenhouse gas emissions in particular from large stationary. A key challenge in this arena is the monitoring and verification (M&V) of CO2 plumes in the deep subsurface. Towards that end, we have developed a tool that can simultaneously invert multiple sub-surface data sets to constrain the location, geometry, and saturation of subsurface CO2 plumes. We have focused on a suite of unconventional geophysical approaches that measure changes in electrical properties (electrical resistance tomography, electromagnetic induction tomography) and bulk crustal deformation (til-meters). We had alsomore » used constraints of the geology as rendered in a shared earth model (ShEM) and of the injection (e.g., total injected CO{sub 2}). We describe a stochastic inversion method for mapping subsurface regions where CO{sub 2} saturation is changing. The technique combines prior information with measurements of injected CO{sub 2} volume, reservoir deformation and electrical resistivity. Bayesian inference and a Metropolis simulation algorithm form the basis for this approach. The method can (a) jointly reconstruct disparate data types such as surface or subsurface tilt, electrical resistivity, and injected CO{sub 2} volume measurements, (b) provide quantitative measures of the result uncertainty, (c) identify competing models when the available data are insufficient to definitively identify a single optimal model and (d) rank the alternative models based on how well they fit available data. We present results from general simulations of a hypothetical case derived from a real site. We also apply the technique to a field in Wyoming, where measurements collected during CO{sub 2} injection for enhanced oil recovery serve to illustrate the method's performance. The stochastic inversions provide estimates of the most probable location, shape, volume of the plume and most likely CO{sub 2} saturation. The results suggest that the method can reconstruct data with poor signal to noise ratio and use hard constraints available from many sites and applications. External interest in the approach and method is high, and already commercial and DOE entities have requested technical work using the newly developed methodology for CO{sub 2} monitoring.« less

Methane hydrate formation in turbidite sediments of northern Cascadia, IODP Expedition 311

USGS Publications Warehouse

Torres, M.E.; Trehu, A.M.; Cespedes, N.; Kastner, M.; Wortmann, U.G.; Kim, J.-H.; Long, P.; Malinverno, A.; Pohlman, J.W.; Riedel, M.; Collett, T.

2008-01-01

Expedition 311 of the Integrated Ocean Drilling Program (IODP) to northern Cascadia recovered gas-hydrate bearing sediments along a SW-NE transect from the first ridge of the accretionary margin to the eastward limit of gas-hydrate stability. In this study we contrast the gas gas-hydrate distribution from two sites drilled ~ 8??km apart in different tectonic settings. At Site U1325, drilled on a depositional basin with nearly horizontal sedimentary sequences, the gas-hydrate distribution shows a trend of increasing saturation toward the base of gas-hydrate stability, consistent with several model simulations in the literature. Site U1326 was drilled on an uplifted ridge characterized by faulting, which has likely experienced some mass wasting events. Here the gas hydrate does not show a clear depth-distribution trend, the highest gas-hydrate saturation occurs well within the gas-hydrate stability zone at the shallow depth of ~ 49??mbsf. Sediments at both sites are characterized by abundant coarse-grained (sand) layers up to 23??cm in thickness, and are interspaced within fine-grained (clay and silty clay) detrital sediments. The gas-hydrate distribution is punctuated by localized depth intervals of high gas-hydrate saturation, which preferentially occur in the coarse-grained horizons and occupy up to 60% of the pore space at Site U1325 and > 80% at Site U1326. Detailed analyses of contiguous samples of different lithologies show that when enough methane is present, about 90% of the variance in gas-hydrate saturation can be explained by the sand (> 63????m) content of the sediments. The variability in gas-hydrate occupancy of sandy horizons at Site U1326 reflects an insufficient methane supply to the sediment section between 190 and 245??mbsf. ?? 2008 Elsevier B.V.

Sedimentary Catalysis of Radiolytic Hydrogen Production - A Global Perspective

NASA Astrophysics Data System (ADS)

Sauvage, J.; Spivack, A. J.; Smith, D. C.; Anderson, C. H.; Murray, R. W.; D'Hondt, S.

2016-12-01

Constraining rates of various energy- producing metabolic reactions is central to our understanding of subsurface microbial ecosystems. Radiolytic hydrogen (H2), produced by the radioactive splitting of water due to the natural decay of elements in the sediment, has been proposed to be a significant electron donor in sediment of oligothrophic oceanic regions. However accurate constraints of in situ production rates are required to test this hypothesis. We experimentally quantified radiolytic H2 yields (H2 produced per unit of absorbed energy in solution) due to γ radiation (Cs-137) and α radiation (Po-210) in marine sediment by exposing seawater slurries of sediment to radiation and measuring the production of H2. We selected 28 samples from different ocean basins and depositional environments aiming to capture the range of representative lithologies found across the global ocean. These experiments demonstrate that marine sediment greatly amplifies the production of radiolytic H2 production compared to pure water, with seawater-saturated abyssal clay exhibiting the highest yield. South Pacific Gyre [SPG], North Atlantic [NA] and North Pacific Gyre [NPG] abyssal clays amplify H2 production by factors of 13, 16 and 33, respectively. Calcareous ooze amplifies radiolytic H2 production by an average factor of 5. Despite continual production, dissolved H2 concentrations are generally below detection in oxic subseafloor sediment of the SPG, NPG and NA. This suggests that the aerobic H2 oxidation rate (Knallgas reaction) is essentially equal to its production rate in these environments. We assess the relative importance of buried organic matter and radiolytic H2 in terms of electron donor availability by comparing rates of radiolytic H2 production to rates of net O2 respiration (inferred to equal rates of organic oxidation). For NA, SPG and NPG abyssal clay older than a few million years, radiolytic H2 production rates are respectively factors of 20, 30 and 49 higher than rates of organic-fueled respiration rates. Extrapolating these results, we infer that radiolytic H2 is likely to be the predominant electron donor for subseafloor sedimentary communities throughout 37% of the global ocean.

Monitoring of organic contaminants in sediments using low field proton nuclear magnetic resonance

NASA Astrophysics Data System (ADS)

Zhang, Chi; Rupert, Yuri

2016-04-01

The effective monitoring of soils and groundwater contaminated with organic compounds is an important goal of many environmental restoration efforts. Recent geophysical methods such as electrical resistivity, complex conductivity, and ground penetrating radar have been successfully applied to characterize organic contaminants in the subsurface and to monitor remediation process both in laboratory and in field. Low field proton nuclear magnetic resonance (NMR) is a geophysical tool sensitive to the molecular-scale physical and chemical environment of hydrogen-bearing fluids in geological materials and shows promise as a novel method for monitoring contaminant remediation. This laboratory research focuses on measurements on synthetic samples to determine the sensitivity of NMR to the presence of organic contaminants and improve understanding of relationships between NMR observables, hydrological properties of the sediments, and amount and state of contaminants in porous media. Toluene, a light non-aqueous phase liquid (LNAPL) has been selected as a representative organic contaminant. Three types of porous media (pure silica sands, montmorillonite clay, and various sand-clay mixtures with different sand/clay ratios) were prepared as synthetic sediments. NMR relaxation time (T2) and diffusion-relaxation (D - T2) correlation measurements were performed in each sediment saturated with water and toluene mixed fluid at assorted concentrations (0% toluene and 100% water, 1% toluene and 99% water, 5% toluene and 95% water, 25% toluene and 75% water, and 100% toluene and 0% water) to 1) understand the effect of different porous media on the NMR responses in each fluid mixture, 2) investigate the role of clay content on T2 relaxation of each fluid, 3) quantify the amount hydrocarbons in the presence of water in each sediment, and 4) resolve hydrocarbons from water in D - T2 map. Relationships between the compositions of porous media, hydrocarbon concentration, and hydraulic properties of sediments will be presented and discussed. A minimum toluene detection limit has been established, and influences on NMR signals from increasing contaminant concentration have been investigated as well. It is evident in our data that the dominant control of porous media on NMR responses relies on clay content in the sand-clay mixture.

The Development of 3d Sub-Surface Mapping Scheme and its Application to Martian Lobate Debris Aprons

NASA Astrophysics Data System (ADS)

Baik, H.; Kim, J.

2017-07-01

The Shallow Subsurface Radar (SHARAD), a sounding radar equipped on the Mars Reconnaissance Orbiter (MRO), has produced highly valuable information about the Martian subsurface. In particular, the complicated substructures of Mars such as polar deposit, pedestal crater and the other geomorphic features involving possible subsurface ice body has been successfully investigated by SHARAD. In this study, we established a 3D subsurface mapping strategy employing the multiple SHARAD profiles. A number of interpretation components of SHARAD signals were integrated into a subsurface mapping scheme using radargram information and topographic data, then applied over a few mid latitude Lobate Debris Aprons (LDAs). From the identified subsurface layers of LDA, and the GIS data base incorporating the other interpretation outcomes, we are expecting to trace the origin of LDAs. Also, the subsurface mapping scheme developed in this study will be further applied to other interesting Martian geological features such as inter crater structures, aeolian deposits and fluvial sediments. To achieve higher precision sub-surface mapping, the clutter simulation employing the high resolution topographic data and the upgraded clustering algorithms assuming multiple sub-surface layers will be also developed.

Evaluation of the potential for artificial ground-water recharge in eastern San Joaquin County, California; Phase 3

USGS Publications Warehouse

Hamlin, S.N.

1987-01-01

Infiltration tests were used to evaluate the potential of basin spreading surface water as a means of artificially recharging the aquifer system in eastern San Joaquin County, California. Two infiltration sites near Lockeford and Linden were selected on the basis of information collected during the first two phases of the study. Data from the infiltration tests indicate that the two sites are acceptable for recharge by the basin-spreading method. Infiltration rates ranged between 6.7 and 10.5 ft/day near Lockeford and between 2.6 and 11.2 ft/day near Linden. Interpretation of these data is limited by lack of information on the response of the saturated zone during testing and by the inherent difficulty in extrapolating the results of small-scale tests to larger long-term operations. Lithology is a major factor that controls infiltration rates at the test sites. The unsaturated zone is characterized by heterogeneous layers of coarse- and fine- grained materials. Clay layers of low hydraulic conductivity commonly form discontinuous lenses that may cause a transient perched water table to develop during recharge. Water level measurements from wells screened in the unsaturated zone indicate that the perched water table could reach the land surface after 2 and 5 months of recharge near Lockeford and Linden, respectively. These figures probably represent the minimum time necessary for saturation of the land. Another major factor that affects infiltration rates is the quality of the recharge water, particularly the suspended sediment content. The clogging action of suspended sediment may be minimized by: (1) pretreatment of recharge water in a settling pond, (2) adherence to a routine program of monitoring and maintenance, and (3) proper design of the recharge facility. Other factors that affect infiltration rates include basin excavation technique, basin shape, and maintenance procedures. Efficient operation of the recharge facility requires careful attention to the relation between subsurface water levels and infiltration rates. (Author 's abstract)

Anaerobic U(IV) Bio-oxidation and the Resultant Remobilization of Uranium in Contaminated Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Coates, John D.

2005-06-01

A proposed strategy for the remediation of uranium (U) contaminated sites is based on immobilizing U by reducing the oxidized soluble U, U(VI), to form a reduced insoluble end product, U(IV). Due to the use of nitric acid in the processing of nuclear fuels, nitrate is often a co-contaminant found in many of the environments contaminated with uranium. Recent studies indicate that nitrate inhibits U(VI) reduction in sediment slurries. However, the mechanism responsible for the apparent inhibition of U(VI) reduction is unknown, i.e. preferential utilization of nitrate as an electron acceptor, direct biological oxidation of U(IV) coupled to nitrate reduction,more » and/or abiotic oxidation by intermediates of nitrate reduction. Recent studies indicates that direct biological oxidation of U(IV) coupled to nitrate reduction may exist in situ, however, to date no organisms have been identified that can grow by this metabolism. In an effort to evaluate the potential for nitrate-dependent bio-oxidation of U(IV) in anaerobic sedimentary environments, we have initiated the enumeration of nitrate-dependent U(IV) oxidizing bacteria. Sediments, soils, and groundwater from uranium (U) contaminated sites, including subsurface sediments from the NABIR Field Research Center (FRC), as well as uncontaminated sites, including subsurface sediments from the NABIR FRC and Longhorn Army Ammunition Plant, Texas, lake sediments, and agricultural field soil, sites served as the inoculum source. Enumeration of the nitrate-dependent U(IV) oxidizing microbial population in sedimentary environments by most probable number technique have revealed sedimentary microbial populations ranging from 9.3 x 101 - 2.4 x 103 cells (g sediment)-1 in both contaminated and uncontaminated sites. Interestingly uncontaminated subsurface sediments (NABIR FRC Background core FB618 and Longhorn Texas Core BH2-18) both harbored the most numerous nitrate-dependent U(IV) oxidizing population 2.4 x 103 cells (g sediment)-1. The nitrate-dependent U(IV) oxidizing microbial population in groundwaters is less numerous ranging from 0 cells mL-1 (Well FW300, Uncontaminated Background NABIR FRC) to 4.3 x 102 cells mL-1 (Well TPB16, Contaminated Area 2 NABIR FRC). The presence of nitrate-dependent U(IV) oxidizing bacteria supports our hypothesis that bacteria capable of anaerobic U(IV) oxidation are ubiquitous and indigenous to sedimentary and groundwater environments.« less

Energy Requirements of Hydrogen-utilizing Microbes: A Boundary Condition for Subsurface Life

NASA Technical Reports Server (NTRS)

Hoehler, Tori M.; Alperin, Marc J.; Albert, Daniel B.; Martens, Christopher S.

2003-01-01

Microbial ecosystems based on the energy supplied by water-rock chemistry carry particular significance in the context of geo- and astrobiology. With no direct dependence on solar energy, lithotrophic microbes could conceivably penetrate a planetary crust to a depth limited only by temperature or pressure constraints (several kilometers or more). The deep lithospheric habitat is thereby potentially much greater in volume than its surface counterpart, and in addition offers a stable refuge against inhospitable surface conditions related to climatic or atmospheric evolution (e.g., Mars) or even high-energy impacts (e.g., early in Earth's history). The possibilities for a deep microbial biosphere are, however, greatly constrained by life s need to obtain energy at a certain minimum rate (the maintenance energy requirement) and of a certain minimum magnitude (the energy quantum requirement). The mere existence of these requirements implies that a significant fraction of the chemical free energy available in the subsurface environment cannot be exploited by life. Similar limits may also apply to the usefulness of light energy at very low intensities or long wavelengths. Quantification of these minimum energy requirements in terrestrial microbial ecosystems will help to establish a criterion of energetic habitability that can significantly constrain the prospects for life in Earth's subsurface, or on other bodies in the solar system. Our early work has focused on quantifying the biological energy quantum requirement for methanogenic archaea, as representatives of a plausible subsurface metabolism, in anoxic sediments (where energy availability is among the most limiting factors in microbial population growth). In both field and laboratory experiments utilizing these sediments, methanogens retain a remarkably consistent free energy intake, in the face of fluctuating environmental conditions that affect energy availability. The energy yields apparently required by methanogens in these sediment systems for sustained metabolism are about half that previously thought necessary. Lowered energy requirements would imply that a correspondingly greater proportion of the planetary subsurface could represent viable habitat for microorganisms.

Effects of Surface and Subsurface Bed Material Composition on Gravel Transport and Flow Competence Relations—Possibilities for Prediction

NASA Astrophysics Data System (ADS)

Bunte, K.; Abt, S. R.; Swingle, K. W.; Cenderelli, D. A.; Gaeuman, D. A.

2014-12-01

Bedload transport and flow competence relations are difficult to predict in coarse-bedded steep streams where widely differing sediment supply, bed stability, and complex flow hydraulics greatly affect amounts and sizes of transported gravel particles. This study explains how properties of bed material surface and subsurface size distributions are directly related to gravel transport and may be used for prediction of gravel transport and flow competence relations. Gravel transport, flow competence, and bed material size were measured in step-pool and plane-bed streams. Power functions were fitted to gravel transport QB=aQb and flow competence Dmax=cQd relations; Q is water discharge. Frequency distributions of surface FDsurf and subsurface FDsub bed material were likewise described by power functions FDsurf=hD j and FDsub=kDm fitted over six 0.5-phi size classes within 4 to 22.4 mm. Those gravel sizes are typically mobile even in moderate floods. Study results show that steeper subsurface bed material size distributions lead to steeper gravel transport and flow competence relations, whereas larger amounts of sediment contained in those 6 size bedmaterial classes (larger h and k) flatten the relations. Similarly, steeper surface size distributions decrease the coefficients of the gravel transport and flow competence relations, whereas larger amounts of sediment within the six bed material classes increase the intercepts of gravel transport and flow competence relations. Those relations are likely causative in streams where bedload stems almost entirely from the channel bed as opposed to direct (unworked) contributions from hillslopes and tributaries. The exponent of the subsurface bed material distribution m predicted the gravel transport exponent b with r2 near 0.7 and flow competence exponent d with r2 near 0.5. The intercept of bed surface distributions h increased the intercept a of gravel transport and c of the flow competence relations with r2 near 0.6.

Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG)

PubMed Central

Parkes, R John; Sellek, Gerard; Webster, Gordon; Martin, Derek; Anders, Erik; Weightman, Andrew J; Sass, Henrik

2009-01-01

Deep subseafloor sediments may contain depressurization-sensitive, anaerobic, piezophilic prokaryotes. To test this we developed the DeepIsoBUG system, which when coupled with the HYACINTH pressure-retaining drilling and core storage system and the PRESS core cutting and processing system, enables deep sediments to be handled without depressurization (up to 25 MPa) and anaerobic prokaryotic enrichments and isolation to be conducted up to 100 MPa. Here, we describe the system and its first use with subsurface gas hydrate sediments from the Indian Continental Shelf, Cascadia Margin and Gulf of Mexico. Generally, highest cell concentrations in enrichments occurred close to in situ pressures (14 MPa) in a variety of media, although growth continued up to at least 80 MPa. Predominant sequences in enrichments were Carnobacterium, Clostridium, Marinilactibacillus and Pseudomonas, plus Acetobacterium and Bacteroidetes in Indian samples, largely independent of media and pressures. Related 16S rRNA gene sequences for all of these Bacteria have been detected in deep, subsurface environments, although isolated strains were piezotolerant, being able to grow at atmospheric pressure. Only the Clostridium and Acetobacterium were obligate anaerobes. No Archaea were enriched. It may be that these sediment samples were not deep enough (total depth 1126–1527 m) to obtain obligate piezophiles. PMID:19694787

Subsurface sediment contamination during borehole drilling with an air-actuated down-hole hammer.

PubMed

Malard, Florian; Datry, Thibault; Gibert, Janine

2005-10-01

Drilling methods can severely alter physical, chemical, and biological properties of aquifers, thereby influencing the reliability of water samples collected from groundwater monitoring wells. Because of their fast drilling rate, air-actuated hammers are increasingly used for the installation of groundwater monitoring wells in unconsolidated sediments. However, oil entrained in the air stream to lubricate the hammer-actuating device can contaminate subsurface sediments. Concentrations of total hydrocarbons, heavy metals (Cu, Ni, Cr, Zn, Pb, and Cd), and nutrients (particulate organic carbon, nitrogen, and phosphorus) were measured in continuous sediment cores recovered during the completion of a 26-m deep borehole drilled with a down-hole hammer in glaciofluvial deposits. Total hydrocarbons, Cu, Ni, Cr and particulate organic carbon (POC) were all measured at concentrations far exceeding background levels in most sediment cores. Hydrocarbon concentration averaged 124 +/- 118 mg kg(-1) dry sediment (n = 78 samples) with peaks at depths of 8, 14, and 20 m below the soil surface (maximum concentration: 606 mg kg(-1)). The concentrations of hydrocarbons, Cu, Ni, Cr, and POC were positively correlated and exhibited a highly irregular vertical pattern, that probably reflected variations in air loss within glaciofluvial deposits during drilling. Because the penetration of contaminated air into the formation is unpreventable, the representativeness of groundwater samples collected may be questioned. It is concluded that air percussion drilling has strong limitations for well installation in groundwater quality monitoring surveys.

Variability of subseafloor viral abundance at the geographically and geologically distinct continental margins.

PubMed

Yanagawa, Katsunori; Morono, Yuki; Yoshida-Takashima, Yukari; Eitoku, Masamitsu; Sunamura, Michinari; Inagaki, Fumio; Imachi, Hiroyuki; Takai, Ken; Nunoura, Takuro

2014-04-01

We studied the relationship between viral particle and microbial cell abundances in marine subsurface sediments from three geographically distinct locations in the continental margins (offshore of the Shimokita Peninsula of Japan, the Cascadia Margin off Oregon, and the Gulf of Mexico) and found depth variations in viral abundances among these sites. Viruses in sediments obtained offshore of the Shimokita and in the Cascadia Margin generally decreased with increasing depth, whereas those in sediments from the Gulf of Mexico were relatively constant throughout the investigated depths. In addition, the abundance ratios of viruses to microbial cells notably varied among the sites, ranging between 10(-3) and 10(1) . The subseafloor viral abundance offshore of the Shimokita showed a positive relationship with the microbial cell abundance and the sediment porosity. In contrast, no statistically significant relationship was observed in the Cascadia Margin and the Gulf of Mexico sites, presumably due to the long-term preservation of viruses from enzymatic degradation within the low-porosity sediments. Our observations indicate that viral abundance in the marine subsurface sedimentary environment is regulated not only by in situ production but also by the balance of preservation and decay, which is associated with the regional sedimentation processes in the geological settings. © 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Physically-Based Assessment of Intrinsic Groundwater Resource Vulnerability in AN Urban Catchment

NASA Astrophysics Data System (ADS)

Graf, T.; Therrien, R.; Lemieux, J.; Molson, J. W.

2013-12-01

Several methods exist to assess intrinsic groundwater (re)source vulnerability for the purpose of sustainable groundwater management and protection. However, several methods are empirical and limited in their application to specific types of hydrogeological systems. Recent studies suggest that a physically-based approach could be better suited to provide a general, conceptual and operational basis for groundwater vulnerability assessment. A novel method for physically-based assessment of intrinsic aquifer vulnerability is currently under development and tested to explore the potential of an integrated modelling approach, combining groundwater travel time probability and future scenario modelling in conjunction with the fully integrated HydroGeoSphere model. To determine the intrinsic groundwater resource vulnerability, a fully coupled 2D surface water and 3D variably-saturated groundwater flow model in conjunction with a 3D geological model (GoCAD) has been developed for a case study of the Rivière Saint-Charles (Québec/Canada) regional scale, urban watershed. The model has been calibrated under transient flow conditions for the hydrogeological, variably-saturated subsurface system, coupled with the overland flow zone by taking into account monthly recharge variation and evapotranspiration. To better determine the intrinsic groundwater vulnerability, two independent approaches are considered and subsequently combined in a simple, holistic multi-criteria-decision analyse. Most data for the model comes from an extensive hydrogeological database for the watershed, whereas data gaps have been complemented via field tests and literature review. The subsurface is composed of nine hydrofacies, ranging from unconsolidated fluvioglacial sediments to low permeability bedrock. The overland flow zone is divided into five major zones (Urban, Rural, Forest, River and Lake) to simulate the differences in landuse, whereas the unsaturated zone is represented via the model integrated Van-Genuchten function. The model setup and optimisation turn out to be the most challenging part because of the non-trivial nature (due to the highly non-linear PDEs) of the coupling procedure between the surface and subsurface domain, while keeping realistic parameter ranges and obtaining realistic simulation results in both domains. The model calibration is based on water level monitoring as well as daily mean river discharge measurement at different gauge stations within the catchment. It is intended to create multiple model outcomes for the numerical modelling of the groundwater vulnerability to take into account uncertainty due to the model input data. The next step of the overall vulnerability assessment consists in modelling future vulnerability scenario(s), applying realistic changes to the model by using PEST with SENSAN for subsequent sensitivity analysis. The PEST model could also potentially be used for a model recalibration as a function of the model parameters sensitivity (simple perturbation method). Preliminary results showing a good fit between the observed and simulated water levels and hydrographs. However the simulated water depth at the overland flow domain as well as the simulated saturation distribution in the porous media domain are still showing room for improvement of the numerical model.

Microbial transformations of arsenic: Mobilization from glauconitic sediments to water

USGS Publications Warehouse

Mumford, Adam C.; Barringer, Julia L.; Benzel, William M.; Reilly, Pamela A.; Young, L.Y.

2012-01-01

In the Inner Coastal Plain of New Jersey, arsenic (As) is released from glauconitic sediment to carbon- and nutrient-rich shallow groundwater. This As-rich groundwater discharges to a major area stream. We hypothesize that microbes play an active role in the mobilization of As from glauconitic subsurface sediments into groundwater in the Inner Coastal Plain of New Jersey. We have examined the potential impact of microbial activity on the mobilization of arsenic from subsurface sediments into the groundwater at a site on Crosswicks Creek in southern New Jersey. The As contents of sediments 33–90 cm below the streambed were found to range from 15 to 26.4 mg/kg, with siderite forming at depth. Groundwater beneath the streambed contains As at concentrations up to 89 μg/L. Microcosms developed from site sediments released 23 μg/L of As, and active microbial reduction of As(V) was observed in microcosms developed from site groundwater. DNA extracted from site sediments was amplified with primers for the 16S rRNA gene and the arsenate respiratory reductase gene, arrA, and indicated the presence of a diverse anaerobic microbial community, as well as the presence of potential arsenic-reducing bacteria. In addition, high iron (Fe) concentrations in groundwater and the presence of iron-reducing microbial genera suggests that Fe reduction in minerals may provide an additional mechanism for release of associated As, while arsenic-reducing microorganisms may serve to enhance the mobility of As in groundwater at this site.

A new technology for determining transport parameters in porous media

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conca, J.L.; Wright, J.

The UFA Method can directly and rapidly measure transport parameters for any porous medium over a wide range of water contents and conditions. UFA results for subsurface sediments at a mixed-waste disposal site at the Hanford Site in Washington State provided the data necessary for detailed hydrostratigraphic mapping, subsurface flux and recharge distributions, and subsurface chemical mapping. Seven hundred unsaturated conductivity measurements along with pristine pore water extractions were obtained in only six months using the UFA. These data are used to provide realistic information to conceptual models, predictive models and restoration strategies.

Fluid pressure responses for a Devil's Slide-like system: problem formulation and simulation

USGS Publications Warehouse

Thomas, Matthew A.; Loague, Keith; Voss, Clifford I.

2015-01-01

This study employs a hydrogeologic simulation approach to investigate subsurface fluid pressures for a landslide-prone section of the central California, USA, coast known as Devil's Slide. Understanding the relative changes in subsurface fluid pressures is important for systems, such as Devil's Slide, where slope creep can be interrupted by episodic slip events. Surface mapping, exploratory core, tunnel excavation records, and dip meter data were leveraged to conceptualize the parameter space for three-dimensional (3D) Devil's Slide-like simulations. Field observations (i.e. seepage meter, water retention, and infiltration experiments; well records; and piezometric data) and groundwater flow simulation (i.e. one-dimensional vertical, transient, and variably saturated) were used to design the boundary conditions for 3D Devil's Slide-like problems. Twenty-four simulations of steady-state saturated subsurface flow were conducted in a concept-development mode. Recharge, heterogeneity, and anisotropy are shown to increase fluid pressures for failure-prone locations by up to 18.1, 4.5, and 1.8% respectively. Previous estimates of slope stability, driven by simple water balances, are significantly improved upon with the fluid pressures reported here. The results, for a Devil's Slide-like system, provide a foundation for future investigations

Viral activities and life cycles in deep subseafloor sediments.

PubMed

Engelhardt, Tim; Orsi, William D; Jørgensen, Bo Barker

2015-12-01

Viruses are highly abundant in marine subsurface sediments and can even exceed the number of prokaryotes. However, their activity and quantitative impact on microbial populations are still poorly understood. Here, we use gene expression data from published continental margin subseafloor metatranscriptomes to qualitatively assess viral diversity and activity in sediments up to 159 metres below seafloor (mbsf). Mining of the metatranscriptomic data revealed 4651 representative viral homologues (RVHs), representing 2.2% of all metatranscriptome sequence reads, which have close translated homology (average 77%, range 60-97% amino acid identity) to viral proteins. Archaea-infecting RVHs are exclusively detected in the upper 30 mbsf, whereas RVHs for filamentous inoviruses predominate in the deepest sediment layers. RVHs indicative of lysogenic phage-host interactions and lytic activity, notably cell lysis, are detected at all analysed depths and suggest a dynamic virus-host association in the marine deep biosphere studied here. Ongoing lytic viral activity is further indicated by the expression of clustered, regularly interspaced, short palindromic repeat-associated cascade genes involved in cellular defence against viral attacks. The data indicate the activity of viruses in subsurface sediment of the Peruvian margin and suggest that viruses indeed cause cell mortality and may play an important role in the turnover of subseafloor microbial biomass. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Acoustic Velocity Log Numerical Simulation and Saturation Estimation of Gas Hydrate Reservoir in Shenhu Area, South China Sea

PubMed Central

Xiao, Kun; Zou, Changchun; Xiang, Biao; Liu, Jieqiong

2013-01-01

Gas hydrate model and free gas model are established, and two-phase theory (TPT) for numerical simulation of elastic wave velocity is adopted to investigate the unconsolidated deep-water sedimentary strata in Shenhu area, South China Sea. The relationships between compression wave (P wave) velocity and gas hydrate saturation, free gas saturation, and sediment porosity at site SH2 are studied, respectively, and gas hydrate saturation of research area is estimated by gas hydrate model. In depth of 50 to 245 m below seafloor (mbsf), as sediment porosity decreases, P wave velocity increases gradually; as gas hydrate saturation increases, P wave velocity increases gradually; as free gas saturation increases, P wave velocity decreases. This rule is almost consistent with the previous research result. In depth of 195 to 220 mbsf, the actual measurement of P wave velocity increases significantly relative to the P wave velocity of saturated water modeling, and this layer is determined to be rich in gas hydrate. The average value of gas hydrate saturation estimated from the TPT model is 23.2%, and the maximum saturation is 31.5%, which is basically in accordance with simplified three-phase equation (STPE), effective medium theory (EMT), resistivity log (Rt), and chloride anomaly method. PMID:23935407

Nilosyrtis Mensae

NASA Image and Video Library

2003-01-30

The floors of these craters imaged by NASA Mars Odyssey contain very interesting and enigmatic materials that may hold shallow subsurface ground ice with varying amounts of a sediment covering mantle.

Evolution of gas saturation and relative permeability during gas production from hydrate-bearing sediments: Gas invasion vs. gas nucleation

NASA Astrophysics Data System (ADS)

Jang, Jaewon; Santamarina, J. Carlos

2014-01-01

Capillarity and both gas and water permeabilities change as a function of gas saturation. Typical trends established in the discipline of unsaturated soil behavior are used when simulating gas production from hydrate-bearing sediments. However, the evolution of gas saturation and water drainage in gas invasion (i.e., classical soil behavior) and gas nucleation (i.e., gas production) is inherently different: micromodel experimental results show that gas invasion forms a continuous flow path while gas nucleation forms isolated gas clusters. Complementary simulations conducted using tube networks explore the implications of the two different desaturation processes. In spite of their distinct morphological differences in fluid displacement, numerical results show that the computed capillarity-saturation curves are very similar in gas invasion and nucleation (the gas-water interface confronts similar pore throat size distribution in both cases); the relative water permeability trends are similar (the mean free path for water flow is not affected by the topology of the gas phase); and the relative gas permeability is slightly lower in nucleation (delayed percolation of initially isolated gas-filled pores that do not contribute to gas conductivity). Models developed for unsaturated sediments can be used for reservoir simulation in the context of gas production from hydrate-bearing sediments, with minor adjustments to accommodate a lower gas invasion pressure Po and a higher gas percolation threshold.

Experimental determination of methane dissolution from simulated subsurface oil leakages

NASA Astrophysics Data System (ADS)

Sauthoff, W.; Peltzer, E. T.; Walz, P. M.; Brewer, P. G.

2013-12-01

Subsurface oil leakages and increased offshore drilling efforts have raised concern over the fate of hydrocarbon mixtures of oil and gas in ocean environments. Recent wellhead and pipeline failures in the Gulf of Mexico are extreme examples of this problem. Understanding the mechanism and rate of vertical transport of hydrocarbon chemical species is necessary to predict the environmental impact of subsurface leakages. In a series of controlled experiments, we carried out a deep-sea field experiment in Monterey Canyon to investigate the behavior of a gas-saturated liquid hydrocarbon mass rising from the seafloor. Aboard the R/V Rachel Carson, we used the ROV Ventana to transport a laboratory prepared volume of decane (C10H22) saturated with methane gas (CH4) to mimic a subsurface seafloor discharge. We released the oil and gas mixture into a vertically oriented open bottom glass tube followed by methane loss rate measurements both at discrete depths, and during rapid, continuous vehicle ascent from 800 to 100 m water depth to monitor changes in dissolution and bubble nucleation. Using laser Raman techniques and HD video we quantified the chemical state of the hydrocarbon fluid, including rate of methane gas dissolution. The primary methane Raman peak was readily observable within the decane C-H stretching complex. Variation in the amount of gas dissolved in the oil greatly influences oil plume density and in turn oil plume vertical rise rate. Our results show that the rise rate of the hydrocarbon mass significantly exceeds the rate at which the excess methane was lost by dissolution. This result implies that vertical transport of methane in the saturated hydrocarbon liquid phase can greatly exceed a gas bubble plume ascending the water column from a seafloor source. These results and observations may be applicable to improved understanding of the composition, distribution, and environmental fate of leaked hydrocarbon mixtures and inform remediation efforts.

Investigation of Coastal Hydrogeology Utilizing Geophysical and Geochemical Tools along the Broward County Coast, Florida

USGS Publications Warehouse

Reich, Christopher D.; Swarzenski, Peter W.; Greenwood, W. Jason; Wiese, Dana S.

2008-01-01

Geophysical (CHIRP, boomer, and continuous direct-current resistivity) and geochemical tracer studies (continuous and time-series 222Radon) were conducted along the Broward County coast from Port Everglades to Hillsboro Inlet, Florida. Simultaneous seismic, direct-current resistivity, and radon surveys in the coastal waters provided information to characterize the geologic framework and identify potential groundwater-discharge sites. Time-series radon at the Nova Southeastern University National Coral Reef Institute (NSU/NCRI) seawall indicated a very strong tidally modulated discharge of ground water with 222Rn activities ranging from 4 to 10 disintegrations per minute per liter depending on tidal stage. CHIRP seismic data provided very detailed bottom profiles (i.e., bathymetry); however, acoustic penetration was poor and resulted in no observed subsurface geologic structure. Boomer data, on the other hand, showed features that are indicative of karst, antecedent topography (buried reefs), and sand-filled troughs. Continuous resistivity profiling (CRP) data showed slight variability in the subsurface along the coast. Subtle changes in subsurface resistivity between nearshore (higher values) and offshore (lower values) profiles may indicate either a freshening of subsurface water nearshore or a change in sediment porosity or lithology. Further lithologic and hydrologic controls from sediment or rock cores or well data are needed to constrain the variability in CRP data.

Rheological Properties of Aqueous Colloidal Silica Suspensions Related to Amendment Delivery for Subsurface Remediation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Shuo; Zhong, Lirong; Li, Guanghe

Colloidal silica (fumed silica) suspensions are being tested as carriers for remedial amendment delivery in subsurface remediation and as media for underground contamination containment. The knowledge of the rheological behavior of the silica suspensions is lack in the literature while it is essential for the preparation and field injection of the suspensions. This contribution is focused on the rheological characteristics of colloidal silica suspensions under various environmental conditions relevant to amendment delivery for subsurface remediation. We investigated the influence of silica particle concentration, water source, ionic strength, pH, aging, amendment type and concentration, and subsurface sediment on the rheological behaviormore » of the suspensions. All tested suspension formulations exhibited shear thinning before gelation. Higher silica particle concentration and salinity (Na+ and K+) increased suspensions’ viscosity and the degree of shear thinning. The viscosity of suspensions increased with aging. The suspensions at natural pH exhibited the highest viscosity compared to the acidic and alkaline suspensions with the same silica concentration. Addition of KMnO4 amendment to aqueous silica suspensions increased viscosity, while addition of alcohol amendment decreased suspensions’ viscosity. The presence of amendment did not reduce shear thinning. The gelation rate of silica suspensions was increased with silica concentration and with the addition of sediments. The rheological characteristics of shear thinning aqueous fumed silica suspensions were compared to that of shear thinning solutions formed with organic polymer xanthan gum, which was applied for amendment delivery in subsurface remediation.« less

Vernal Crater, SW Arabia Terra: MSL Candidate with Extensively Layered Sediments, Possible Lake Deposits, and a Long History of Subsurface Ice

NASA Technical Reports Server (NTRS)

Oehler, Dorothy Z.; Allen, Carlton C.

2007-01-01

Vernal Crater is a Mars Science Laboratory (MSL) landing site candidate providing relatively easy access to extensively layered sediments as well as potential lake deposits. Sediments of Vernal Crater are 400-1200 m below those being investigated by Opportunity in Meridiani Planum, and as such would allow study of significantly older geologic units, if Vernal Crater were selected for MSL. The location of Vernal Crater in SW Arabia Terra provides exceptional scientific interest, as rampart craters and gamma-ray spectrometer (GRS) data from the region suggest a long history of ice/fluids in the subsurface. The potential value of this MSL candidate is further enhanced by reports of atmospheric methane over Arabia, as any insight into the source of that methane would significantly increase our understanding of Mars. Finally, should MSL survive beyond its prime mission, the gentle slope within Vernal Crater would provide a route out of the crater for study of the once ice/fluid-rich plains.

Hydrocarbons in sediments from the edge of the Bermuda platform

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sleeter, T.D.; Butler, J.N.; Barbash, J.E.

1979-01-01

Surficial and subsurface (10-13 cm) sediment samples were taken at seven stations (17 cores) on the northern margin of the Bermuda seamount, remote from ship traffic, beaches, and atmospheric fallout from aircraft. Their aliphatic (pentane-extractable) hydrocarbon content was very low, comparable with samples from the North Atlantic Abyssal plain, and two orders of magnitude lower than for typical coastal samples. About half of the aliphatic hydrocarbons are clearly biogenic, and the remainder are characteristic of petroleum residues. Petroleum hydrocarbon concentrations are lower in subsurface (e.g., 0.11 jg/g dry weight) than surface samples (0.47 jg/g), and are lower outside the reefmore » (0.25 jg/g) than inside (0.47 jg/g). These results are qualitatively consistent with a diffusion model. Extremely rapid bioturbation or totally quiescent deposition on a stable sedimentary facies can pobably be eliminated as hypotheses for the deposition and transport mechanism within the sediment. Further studies are needed to determine whether degradation is important.« less

Constraining Subsurface Structure and Composition Using Seismic Refraction Surveys of Proglacial Valleys in the Cordillera Blanca, Peru

NASA Astrophysics Data System (ADS)

Glas, R. L.; Lautz, L.; McKenzie, J. M.; Mark, B. G.; Baker, E. A.; Aubry-Wake, C.; Somers, L. D.; Wigmore, O.

2015-12-01

As tropical glaciers rapidly recede in response to climate change, the storage and discharge of groundwater will play an increasing role in regulating river baseflow, particularly during the dry season, when stream flow is currently sustained predominantly by glacial melt. Little is understood regarding the hydrogeologic processes controlling base flow characteristics of low-gradient proglacial valleys of the Cordillera Blanca in Northwestern Peru, which has the world's highest density of tropical glaciers. To better understand the processes of groundwater storage and discharge in proglacial meadows, we completed seismic refraction surveys in three representative valleys of the Cordillera Blanca range: the Quilcayhuanca, Yanamarey, and Pachacoto valleys. The locations of survey transects were chosen based on locations of previous sediment core sampling, GPR lines, and quantification of groundwater-surface water interaction derived from dye and temperature tracing experiments. The seismic surveys consisted of 48 vertical component geophones with 2.5 m spacing. Across the three representative valleys a total of 15 surveys were conducted, covering a distance of 1800 m in cross, down, and oblique-valley directions. Preliminary interpretation of the seismic refraction data indicates a maximum imaging depth of 16 m below land surface, and a transition from glacio-lacustrine sediments to buried saturated talus at a depth of 6 m in the Quilcayhuanca valley. The organic-rich glacio-lacustrine sediments in the Yanamarey valley have seismic velocities ranging from 300 to 800 m/s and are >16 m in thickness at mid- valley. Weathered metasedimentary bedrock in the Pachacoto valley was imaged at ~5 m below the valley surface, exhibiting a p-wave velocity of 3400 m/s. The knowledge of hydrogeologic structure derived from seismic refraction surveys will provide crucial boundary conditions for future groundwater models of the valleys of the Cordillera Blanca.

The use of distributed hydrological models for the Gard 2002 flash flood event: Analysis of associated hydrological processes

NASA Astrophysics Data System (ADS)

Braud, Isabelle; Roux, Hélène; Anquetin, Sandrine; Maubourguet, Marie-Madeleine; Manus, Claire; Viallet, Pierre; Dartus, Denis

2010-11-01

SummaryThis paper presents a detailed analysis of the September 8-9, 2002 flash flood event in the Gard region (southern France) using two distributed hydrological models: CVN built within the LIQUID® hydrological platform and MARINE. The models differ in terms of spatial discretization, infiltration and water redistribution representation, and river flow transfer. MARINE can also account for subsurface lateral flow. Both models are set up using the same available information, namely a DEM and a pedology map. They are forced with high resolution radar rainfall data over a set of 18 sub-catchments ranging from 2.5 to 99 km2 and are run without calibration. To begin with, models simulations are assessed against post field estimates of the time of peak and the maximum peak discharge showing a fair agreement for both models. The results are then discussed in terms of flow dynamics, runoff coefficients and soil saturation dynamics. The contribution of the subsurface lateral flow is also quantified using the MARINE model. This analysis highlights that rainfall remains the first controlling factor of flash flood dynamics. High rainfall peak intensities are very influential of the maximum peak discharge for both models, but especially for the CVN model which has a simplified overland flow transfer. The river bed roughness also influences the peak intensity and time. Soil spatial representation is shown to have a significant role on runoff coefficients and on the spatial variability of saturation dynamics. Simulated soil saturation is found to be strongly related with soil depth and initial storage deficit maps, due to a full saturation of most of the area at the end of the event. When activated, the signature of subsurface lateral flow is also visible in the spatial patterns of soil saturation with higher values concentrating along the river network. However, the data currently available do not allow the assessment of both patterns. The paper concludes with a set of recommendations for enhancing field observations in order to progress in process understanding and gather a larger set of data to improve the realism of distributed models.

Migration And Entrapment Of Mercury In The Subsurface

NASA Astrophysics Data System (ADS)

M, D.; Nambi, I. M.

2009-12-01

Elemental mercury is an immiscible liquid with high density and high surface tension. The movement of mercury in the saturated subsurface region is therefore considered a case of two phase flow involving mercury and water and is expected to be governed by gravity, viscous and capillary forces. Fundamental investigation into the migration and capillary entrapment of mercury in the subsurface was done by controlled laboratory capillary pressure saturation experiments using mercury and water as non wetting and wetting fluid respectively. Residual mercury saturation and van Genuchten’s capillary entrapment parameters were determined independently for different sizes of porous media. Based on the experimental data, theoretical investigations were done on the role of the three predominant forces and their influence on mercury migration and entrapment. The effects of fluid density and interfacial tension and the influence of Capillary and Bond number on mercury entrapment were analyzed with the help of similar capillary pressure - saturation experiments using Tetrachloroethylene (PCE)-water fluid pair. Mercury-water systems exhibited a low residual saturation of 0.02 and 0.07 as compared to 0.16 and 0.27 for PCE-water systems. Less residual mercury saturation, lack of apparent hysteresis in capillary pressure saturation curves and large variation in van Genuchten’s parameters 'α'(inverse of displacement pressure) and ‘n’ (pore size distribution index) for mercury-water systems compared to PCE-water systems were observed. These anomalies between the two systems elucidate that the capillary trapping is equally dependent on the fluid characteristics especially for high density immiscible fluids. Gravity force nevertheless a predominant controlling factor in the migration of highly dense mercury, is counteracted by not less trivial capillary force which was 1.22x104 times higher than gravity force. The capillary forces thus surmount the gravity forces and cause entrapment of mercury in the soil pores even in homogeneous porous medium system. Bond number (Bond number relates gravity and capillary forces) for mercury-water system was found to 2.5 times higher than PCE-water systems. Large density differences between mercury and water lead to high Bond number and thus less residual saturation. Capillary number (Capillary number relates viscous and capillary forces) was found to be less for mercury-water systems. Literature review unveils that low Capillary number does not influence non wetting residual saturation. But for high density mercury with natural infiltration, even low Capillary number influences residual saturation. With the alarming increase in number of mercury spill sites, results of this study showed a better understanding of the capillary entrapment phenomena and the extent of influence of each predominant force during displacement of highly dense mercury. The fundamental inputs to NAPL entrapment models were generated in this study for mercury for the first time. This data will be used to assess the distribution of mercury in contaminated sites and design suitable remedial alternatives.

Integrated analysis of well logs and seismic data to estimate gas hydrate concentrations at Keathley Canyon, Gulf of Mexico

USGS Publications Warehouse

Lee, M.W.; Collett, T.S.

2008-01-01

Accurately detecting and quantifying gas hydrate or free gas in sediments from seismic data require downhole well-log data to calibrate the physical properties of the gas hydrate-/free gas-bearing sediments. As part of the Gulf of Mexico Joint Industry Program, a series of wells were either cored or drilled in the Gulf of Mexico to characterize the physical properties of gas hydrate-bearing sediments, to calibrate geophysical estimates, and to evaluate source and transport mechanisms for gas within the gas hydrates. Downhole acoustic logs were used sparingly in this study because of degraded log quality due to adverse wellbore conditions. However, reliable logging while drilling (LWD) electrical resistivity and porosity logs were obtained. To tie the well-log information to the available 3-D seismic data in this area, a velocity log was calculated from the available resistivity log at the Keathley Canyon 151-2 well, because the acoustic log or vertical seismic data acquired at the nearby Keathley Canyon 151-3 well were either of poor quality or had limited depth coverage. Based on the gas hydrate saturations estimated from the LWD resistivity log, the modified Biot-Gassmann theory was used to generate synthetic acoustic log and a synthetic seismogram was generated with a fairly good agreement with a seismic profile crossing the well site. Based on the well-log information, a faintly defined bottom-simulating reflection (BSR) in this area is interpreted as a reflection representing gas hydrate-bearing sediments with about 15% saturation overlying partially gas-saturated sediments with 3% saturation. Gas hydrate saturations over 30-40% are estimated from the resistivity log in two distinct intervals at 220-230 and 264-300 m below the sea floor, but gas hydrate was not physically recovered in cores. It is speculated that the poor recovery of cores and gas hydrate morphology are responsible for the lack of physical gas hydrate recovery.

Linking sediment structure, hydrological functioning and biogeochemical cycling in disturbed coastal saltmarshes and implications for vegetation development

NASA Astrophysics Data System (ADS)

Spencer, Kate; Harvey, Gemma; James, Tempest; Simon, Carr; Michelle, Morris

2014-05-01

Saltmarsh restoration undoubtedly provides environmental enhancement, with vegetation quickly re-establishing following the breach of sea walls and subsequent tidal inundation of previously defended areas. Yet evidence increasingly suggests that the restored saltmarshes do not have the same biological characteristics as their natural counterparts (Mossman et al. 2012) and this may be in part be due to physicochemical parameters at the site including anoxia and poor drainage. Hence, restored saltmarshes may not offer the range and quality of ecosystem services anticipated. These environments will have been 'disturbed' by previous land use and there is little understanding of the impacts of this disturbance on the wider hydrogeomorphic and biogeochemical functioning in restored saltmarshes and the implications for saltmarsh vegetation development. This study examines linkages between physical sediment characteristics, sediment structure (using X-ray microtomography), sub-surface hydrology (using pressure transducers and time series analysis), and sediment and porewater geochemistry (major and trace elements, major anions) in sediment cores collected from undisturbed saltmarshes and those restored by de-embankment. Sub-surface sediments in restored saltmarshes have lower organic matter content, lower moisture content and higher bulk density than undisturbed sites. Using X-ray tomography a clear horizon can be observed which separates relict agricultural soils at depth with less dense and structureless sediments deposited since de-embankment. Ratios of open to closed pore space suggest that while undisturbed saltmarshes have the highest porosity, restored saltmarshes have larger void spaces, but limited pore connectivity. Sub-surface hydrological response to tidal flooding was subdued in the restored compared to the undisturbed site, suggesting that porewater flow may be impeded. Time series analysis indicated that flow pathways differ in restored saltmarsh sediments with preferential horizontal flows. The undisturbed saltmarsh displayed typical vertical geochemical sediment profiles. However, in the restored sites total Fe and Mn are elevated at depth indicating an absence of diagenetic cycling, whilst porewater sulphate and nitrate increased at depth suggesting that vertical solute transport is impeded in restored sites. In surface sediments, though total Hg concentrations are similar, Hg methylation rates are significantly higher than in the undisturbed saltmarsh suggesting that surface anoxia and poor drainage may result in increased mobilization and bioavailability of Hg. These findings have implications for the wider biogeochemical ecosystem services offered by saltmarsh restoration and the water-logged, anoxic conditions produced are unsuitable for seedling germination and plant growth. This highlights the need for integrated understanding of physical and biogeochemical processes.

Investigating ebullition in a sand column using dissolved gas analysis and reactive transport modeling

USGS Publications Warehouse

Amos, Richard T.; Mayer, K. Ulrich

2006-01-01

Ebullition of gas bubbles through saturated sediments can enhance the migration of gases through the subsurface, affect the rate of biogeochemical processes, and potentially enhance the emission of important greenhouse gases to the atmosphere. To better understand the parameters controlling ebullition, methanogenic conditions were produced in a column experiment and ebullition through the column was monitored and quantified through dissolved gas analysis and reactive transport modeling. Dissolved gas analysis showed rapid transport of CH4 vertically through the column at rates several times faster than the bromide tracer and the more soluble gas CO2, indicating that ebullition was the main transport mechanism for CH4. An empirically derived formulation describing ebullition was integrated into the reactive transport code MIN3P allowing this process to be investigated on the REV scale in a complex geochemical framework. The simulations provided insights into the parameters controlling ebullition and show that, over the duration of the experiment, 36% of the CH4 and 19% of the CO2 produced were transported to the top of the column through ebullition.

How to Recharge a Confined Alluvial Aquifer System

NASA Astrophysics Data System (ADS)

Maples, S.; Fogg, G. E.; Liu, Y.

2016-12-01

Greater water storage capacity is needed to offset future decreases in snowpack-water storage in California. Managed aquifer recharge (MAR) in California's Central Valley aquifer system is a promising alternative to new surface reservoir storage because it has the potential to both reduce overdraft conditions observed in many Central Valley groundwater basins and offset continued decreases in snowpack storage. MAR to the Central Valley's productive confined-aquifer system remains a challenge because, like most alluvial aquifer systems, it is composed mostly of silt and clay sediments that form nearly ubiquitous, multiple confining layers that inhibit direct recharge of the interconnected sand and gravel body networks. Several studies have mapped surficial soil types in the Central Valley that are conducive to MAR, but few studies have evaluated how subsurface geologic heterogeneity controls recharge to the confined aquifer system. Here, we use a transition probability Markov-chain geostatistical model conditioned with 1200 well logs to create a physically-realistic representation of the subsurface geologic heterogeneity in the American and Cosumnes River watersheds on the east side of the Sacramento Valley, CA, where studies have shown the presence of massive, interconnected, highly-permeable gravel deposits that are potentially conducive to considerably higher rates of regional recharge than would be possible over the rest of the landscape. Such localized stratigraphic features to support accelerated recharge occur throughout the Central Valley, but are mostly still undiscovered. A variably-saturated, fully-integrated, groundwater/surface-water code, ParFlow, was used to simulate MAR dynamics in this system. Results show the potential for (1) accelerated, high-volume recharge through interconnected gravels where they outcrop at land surface, and (2) regional repressurization of the deeper confined aquifer system. These findings provide insight into the critical role of subsurface heterogeneity on MAR dynamics in alluvial aquifer systems and highlight the potential for MAR in California and elsewhere.

Subsurface flow and vegetation patterns in tidal environments

NASA Astrophysics Data System (ADS)

Ursino, Nadia; Silvestri, Sonia; Marani, Marco

2004-05-01

Tidal environments are characterized by a complex interplay of hydrological, geomorphic, and biological processes, and their understanding and modeling thus require the explicit description of both their biotic and abiotic components. In particular, the presence and spatial distribution of salt marsh vegetation (a key factor in the stabilization of the surface soil) have been suggested to be related to topographic factors and to soil moisture patterns, but a general, process-based comprehension of this relationship has not yet been achieved. The present paper describes a finite element model of saturated-unsaturated subsurface flow in a schematic salt marsh, driven by tidal fluctuations and evapotranspiration. The conditions leading to the establishment of preferentially aerated subsurface zones are studied, and inferences regarding the development and spatial distribution of salt marsh vegetation are drawn, with important implications for the overall ecogeomorphological dynamics of tidal environments. Our results show that subsurface water flow in the marsh induces complex water table dynamics, even when the tidal forcing has a simple sinusoidal form. The definition of a space-dependent aeration time is then proposed to characterize root aeration. The model shows that salt marsh subsurface flow depends on the distance from the nearest creek or channel and that the subsurface water movement near tidal creeks is both vertical and horizontal, while farther from creeks, it is primarily vertical. Moreover, the study shows that if the soil saturated conductivity is relatively low (10-6 m s-1, values quite common in salt marsh areas), a persistently unsaturated zone is present below the soil surface even after the tide has flooded the marsh; this provides evidence of the presence of an aerated layer allowing a prolonged presence of oxygen for aerobic root respiration. The results further show that plant transpiration increases the extent and persistence of the aerated layer, thereby introducing a strong positive feedback: Pioneer plants on marsh edges have the effect of increasing soil oxygen availability, thus creating the conditions for the further development of other plant communities.

Microbial physiology-based model of ethanol metabolism in subsurface sediments

NASA Astrophysics Data System (ADS)

Jin, Qusheng; Roden, Eric E.

2011-07-01

A biogeochemical reaction model was developed based on microbial physiology to simulate ethanol metabolism and its influence on the chemistry of anoxic subsurface environments. The model accounts for potential microbial metabolisms that degrade ethanol, including those that oxidize ethanol directly or syntrophically by reducing different electron acceptors. Out of the potential metabolisms, those that are active in the environment can be inferred by fitting the model to experimental observations. This approach was applied to a batch sediment slurry experiment that examined ethanol metabolism in uranium-contaminated aquifer sediments from Area 2 at the U.S. Department of Energy Field Research Center in Oak Ridge, TN. According to the simulation results, complete ethanol oxidation by denitrification, incomplete ethanol oxidation by ferric iron reduction, ethanol fermentation to acetate and H 2, hydrogenotrophic sulfate reduction, and acetoclastic methanogenesis: all contributed significantly to the degradation of ethanol in the aquifer sediments. The assemblage of the active metabolisms provides a frame work to explore how ethanol amendment impacts the chemistry of the environment, including the occurrence and levels of uranium. The results can also be applied to explore how diverse microbial metabolisms impact the progress and efficacy of bioremediation strategies.

Pollen and spores date origin of rift basins from Texas to nova scotia as early late triassic.

PubMed

Traverse, A

1987-06-12

Palynological studies of the nonmarine Newark Supergroup of eastern North America and of rift basins in the northern Gulf of Mexico facilitate correlation with well-dated marine sections of Europe. New information emphasizes the chronological link between the Newark basins and a Gulf of Mexico basin and their common history in the rifting of North America from Pangea. Shales from the subsurface South Georgia Basin are shown to be of late Karnian age (early Late Triassic). The known time of earliest sedimentation in the Culpeper Basin is extended from Norian (late Late Triassic) to mid-Karnian, and the date of earliest sedimentation in the Richmond and Deep River basins is moved to at least earliest Karnian, perhaps Ladinian. The subsurface Eagle Mills Formation in Texas and Arkansas has been dated palynologically as mid- to late Karnian. The oldest parts of the Newark Supergroup, and the Eagle Mills Formation, mostly began deposition in precursor rift basins that formed in Ladinian to early Karnian time. In the southern Newark basins, sedimentation apparently ceased in late Karnian but continued in the northern basins well into the Jurassic, until genesis of the Atlantic ended basin sedimentation.

Adsorption of Dissolved Gases (CH4, CO2, H2, Noble Gases) by Water-Saturated Smectite Clay Minerals

NASA Astrophysics Data System (ADS)

Bourg, I. C.; Gadikota, G.; Dazas, B.

2016-12-01

Adsorption of dissolved gases by water-saturated clay minerals plays important roles in a range of fields. For example, gas adsorption in on clay minerals may significantly impact the formation of CH4 hydrates in fine-grained sediments, the behavior of CH4 in shale, CO2 leakage across caprocks of geologic CO2 sequestration sites, H2 leakage across engineered clay barriers of high-level radioactive waste repositories, and noble gas geochemistry reconstructions of hydrocarbon migration in the subsurface. Despite its importance, the adsorption of gases on clay minerals remains poorly understood. For example, some studies have suggested that clay surfaces promote the formation of CH4 hydrates, whereas others indicate that clay surfaces inhibit the formation of CH4 hydrates. Here, we present molecular dynamics (MD) simulations of the adsorption of a range of gases (CH4, CO2, H2, noble gases) on clay mineral surfaces. Our results indicate that the affinity of dissolved gases for clay mineral surfaces has a non-monotone dependence on the hydrated radius of the gas molecules. This non-monotone dependence arises from a combination of two effects: the polar nature of certain gas molecules (in particular, CO2) and the templating of interfacial water structure by the clay basal surface, which results in the presence of interfacial water "cages" of optimal size for intermediate-size gas molecules (such as Ne or Ar).

Optimal Electromagnetic (EM) Geophysical Techniques to Map the Concentration of Subsurface Ice and Adsorbed Water on Mars and the Moon

NASA Astrophysics Data System (ADS)

Stillman, D. E.; Grimm, R. E.

2013-12-01

Water ice is ubiquitous in our Solar System and is a probable target for planetary exploration. Mapping the lateral and vertical concentration of subsurface ice from or near the surface could determine the origin of lunar and martian ice and quantify a much-needed resource for human exploration. Determining subsurface ice concentration on Earth is not trivial and has been attempted previously with electrical resistivity tomography (ERT), ground penetrating radar (GPR), airborne EM (AEM), and nuclear magnetic resonance (NMR). These EM geophysical techniques do not actually detect ice, but rather the absence of unfrozen water. This causes a non-unique interpretation of frozen and dry subsurface sediments. This works well in the arctic because most locations are not dry. However, for planetary exploration, liquid water is exceedingly rare and subsurface mapping must discriminate between an ice-rich and a dry subsurface. Luckily, nature has provided a unique electrical signature of ice: its dielectric relaxation. The dielectric relaxation of ice creates a temperature and frequency dependence of the electrical properties and varies the relative dielectric permittivity from ~3.1 at radar frequencies to >100 at low frequencies. On Mars, sediments smaller than silt size can hold enough adsorbed unfrozen water to complicate the measurement. This is because the presence of absorbed water also creates frequency-dependent electrical properties. The dielectric relaxation of adsorbed water and ice can be separated as they have different shapes and frequency ranges as long as a spectrum spanning the two relaxations is measured. The volume concentration of ice and adsorbed water is a function of the strength of their relaxations. Therefore, we suggest that capacitively-coupled dielectric spectroscopy (a.k.a. spectral induced polarization or complex resistivity) can detect the concentration of both ice and adsorbed water in the subsurface. To prove this concept we have collected dielectric spectroscopy at the Cold Regions Research and Engineering Laboratory (CRREL) permafrost tunnel in Fox, AK. We were able to detect the ice relaxation in the subsurface despite the considerable amount of subsurface unfrozen water due to the presence of montmorillonite clay and much warmer temperatures than Mars or permanently shadowed regions of the Moon. While dielectric spectroscopy can be used to determine ice and adsorbed water content it does not possess the high resolution mapping capability of a GPR. Moreover, GPR cannot detect subsurface ice content in ice-sediment mixtures as evidenced in the interpretation of the Medusae Fossae Formation. Orbital radar surveys show this unit has a low attenuation and a dielectric permittivity near 4. This allows the formation to be interpreted as ice-rich or a dry high-porosity volcanic tuff unit. Therefore, combining GPR and dielectric spectroscopy will enable high-resolution structural and volatile mapping of the subsurface. Furthermore, the addition of neutron spectroscopy would add total hydrogen abundance in the top meter. This could lead to the determination of how much hydrogen resides in ice, adsorbed water, and minerals.

APPLICATION OF THE ELECTROMAGNETIC BOREHOLE FLOWMETER (EPA/600/R-98/058)

EPA Science Inventory

Spatial variability of saturated zone hydraulic properties has important implications with regard to sampling wells for water quality parameters, use of conventional methods to estimate transmissivity, and remedial system design. Characterization of subsurface heterogeneity requi...

APPLICATION OF THE ELECTROMAGNETIC BOREHOLE FLOWMETER (EPA/600/SR-98/058)

EPA Science Inventory

Spatial variability of saturated zone hydraulic properties has important implications with regard to sampling wells for water quality parameters, use of conventional methods to estimate transmissivity, and remedial system design. Characterization of subsurface heterogeneity requi...

Elevated arsenic and manganese in groundwaters of Murshidabad, West Bengal, India.

PubMed

Sankar, M S; Vega, M A; Defoe, P P; Kibria, M G; Ford, S; Telfeyan, K; Neal, A; Mohajerin, T J; Hettiarachchi, G M; Barua, S; Hobson, C; Johannesson, K; Datta, S

2014-08-01

High levels of geogenic arsenic (As) and manganese (Mn) in drinking water has led to widespread health problems for the population of West Bengal, India. Here we delineate the extent of occurrences of As and Mn in Murshidabad, where the contaminated aquifers occur at shallow depths between 35 and 40 m and where access to safe drinking water is a critical issue for the local population. A total of 78 well-water samples were taken in 4 blocks on either side of the river Bhagirathi: Nabagram and Kandi (west, Pleistocene sediments), Hariharpara and Beldanga (east, Holocene sediments). High As, total iron (FeT) and low Mn concentrations were found in waters from the Holocene gray sediment aquifers east of the river Bhagirathi, while the opposite was found in the Pleistocene reddish-brown aquifer west of the river Bhagirathi in Murshidabad. Speciation of As in water samples from Holocene sediments revealed the dominant species to be As(III), with ratios of As(III):AsT ranging from 0.55 to 0.98 (average 0.74). There were indications from saturation index estimations that Mn solubility is limited by the precipitation of MnCO3. Tubewells from high As areas in proximity to anthropogenic waste influx sources showing high molar Cl/Br ratios, low SO4(2-) and low NO3(-) demonstrate relatively lower As concentrations, thereby reducing As pollution in those wells. Analyses of core samples (2 in each of the blocks) drilled to a depth of 45 m indicate that there is no significant variation in bulk As (5-20mg/kg) between the Holocene and Pleistocene sediments, indicating that favorable subsurface redox conditions conducive to mobilization are responsible for the release of As. The same applies to Mn, but concentrations vary more widely (20-2000 mg/kg). Sequential extraction of Holocene sediments showed As to be associated with 'specifically sorbed-phosphate-extractable' phases (10-15%) and with 'amorphous and well crystalline Fe-oxyhydroxide' phases (around 37%) at As-contaminated well depths, suggesting that the main As release mechanisms could be either competitive ion exchange with PO4(3-), or the dissolution of Fe oxyhydroxides. In the Pleistocene sediments Mn is predominantly found in the easily exchangeable fraction. Published by Elsevier B.V.

Simulating Water Flow in Variably Saturated Soils - Exploring the Advantage of Three-dimensional Models

NASA Astrophysics Data System (ADS)

Hopp, L.; Ivanov, V. Y.

2010-12-01

There is still a debate in rainfall-runoff modeling over the advantage of using three-dimensional models based on partial differential equations describing variably saturated flow vs. models with simpler infiltration and flow routing algorithms. Fully explicit 3D models are computationally demanding but allow the representation of spatially complex domains, heterogeneous soils, conditions of ponded infiltration, and solute transport, among others. Models with simpler infiltration and flow routing algorithms provide faster run times and are likely to be more versatile in the treatment of extreme conditions such as soil drying but suffer from underlying assumptions and ad-hoc parameterizations. In this numerical study, we explore the question of whether these two model strategies are competing approaches or if they complement each other. As a 3D physics-based model we use HYDRUS-3D, a finite element model that numerically solves the Richards equation for variably-saturated water flow. As an example of a simpler model, we use tRIBS+VEGGIE that solves the 1D Richards equation for vertical flow and applies Dupuit-Forchheimer approximation for saturated lateral exchange and gravity-driven flow for unsaturated lateral exchange. The flow can be routed using either the D-8 (steepest descent) or D-infinity flow routing algorithms. We study lateral subsurface stormflow and moisture dynamics at the hillslope-scale, using a zero-order basin topography, as a function of storm size, antecedent moisture conditions and slope angle. The domain and soil characteristics are representative of a forested hillslope with conductive soils in a humid environment, where the major runoff generating process is lateral subsurface stormflow. We compare spatially integrated lateral subsurface flow at the downslope boundary as well as spatial patterns of soil moisture. We illustrate situations where both model approaches perform equally well and identify conditions under which the application of a fully-explicit 3D model may be required for a realistic description of the hydrologic response.

Introduction of the 2nd Phase of the Integrated Hydrologic Model Intercomparison Project

NASA Astrophysics Data System (ADS)

Kollet, Stefan; Maxwell, Reed; Dages, Cecile; Mouche, Emmanuel; Mugler, Claude; Paniconi, Claudio; Park, Young-Jin; Putti, Mario; Shen, Chaopeng; Stisen, Simon; Sudicky, Edward; Sulis, Mauro; Ji, Xinye

2015-04-01

The 2nd Phase of the Integrated Hydrologic Model Intercomparison Project commenced in June 2013 with a workshop at Bonn University funded by the German Science Foundation and US National Science Foundation. Three test cases were defined and compared that are available online at www.hpsc-terrsys.de including a tilted v-catchment case; a case called superslab based on multiple slab-heterogeneities in the hydraulic conductivity along a hillslope; and the Borden site case, based on a published field experiment. The goal of this phase is to further interrogate the coupling of surface-subsurface flow implemented in various integrated hydrologic models; and to understand and quantify the impact of differences in the conceptual and technical implementations on the simulation results, which may constitute an additional source of uncertainty. The focus has been broadened considerably including e.g. saturated and unsaturated subsurface storages, saturated surface area, ponded surface storage in addition to discharge, and pressure/saturation profiles and cross-sections. Here, first results are presented and discussed demonstrating the conceptual and technical challenges in implementing essentially the same governing equations describing highly non-linear moisture redistribution processes and surface-groundwater interactions.

Application of electrical resistivity tomography techniques for mapping man-made sinkholes

NASA Astrophysics Data System (ADS)

Rey, J.; Martínez, J.; Hidalgo, C.; Dueñas, J.

2012-04-01

The suitability of the geophysical prospecting by electrical resistivity tomography to detect and map man-made subsurface cavities and related sinkholes has been studied in the Linares abandoned mining district (Spain). We have selected for this study four mined sectors constituted of different lithologies: granite and phyllites of Paleozoic age, and Triassic shales and sandstones. In three of these sectors, detail underground topographic surveys were carried out to chart the position and dimensions of the mining voids (galleries and chamber), in order to analyze the resolution of this methodology to characterize these cavities by using different electrode arrays. The results are variable, depending on the depth and diameter of the void, the selected electrode array, the spacing between electrodes, geological complexity and data density. These results also indicate that when the cavity is empty, an anomaly with a steep gradient and high resistivity values is registered, because the air that fills the mining void is dielectric, while when the cavities are filled with fine grain sediments, frequently saturated in water, the electrical resistance is lower. In relation with the three different multi-electrode arrays tested, the Wenner-Schlumberger array has resulted to offer the maximum resolution in all these cases, with lower and more stable values for the RMS than the other arrays. Therefore, this electrode array has been applied in the fourth studied sector, a former mine near the city centre of Linares, in an area of urban expansion in which there are problems of subsidence. Two sets of four electrical tomography profiles have been carried out, perpendicular to each other, and which have allowed reaching depths of research between 30-35 m. This net-array allowed the identification of two shallow anomalies of low resistivity values, interpreted as old mining galleries filled with fine material saturated in water. It also allows detecting two fractures, correlated in the profiles and which can be mapped to more than 25 m in depth. As showed by this case study, electrical resistivity tomography can be a suitable tool in sub-surface cavities detection and man-made sinkhole investigations.

Analysis of temperature time series to estimate direction and magnitude of water fluxes in near-surface sediments

NASA Astrophysics Data System (ADS)

Munz, Matthias; Oswald, Sascha E.; Schmidt, Christian

2017-04-01

The application of heat as a hydrological tracer has become a standard method for quantifying water fluxes between groundwater and surface water. Typically, time series of temperatures in the surface water and in the sediment are observed and are subsequently evaluated by a vertical 1D representation of heat transport by advection and dispersion. Several analytical solutions as well as their implementation into user-friendly software exist in order to estimate water fluxes from the observed temperatures. The underlying assumption of a stationary, one-dimensional vertical flow field is frequently violated in natural systems. Here subsurface water flow often has a significant horizontal component. We developed a methodology for identifying the geometry of the subsurface flow field based on the variations of diurnal temperature amplitudes with depths. For instance: Purely vertical heat transport is characterized by an exponential decline of temperature amplitudes with increasing depth. Pure horizontal flow would be indicated by a constant, depth independent vertical amplitude profile. The decline of temperature amplitudes with depths could be fitted by polynomials of different order whereby the best fit was defined by the highest Akaike Information Criterion. The stepwise model optimization and selection, evaluating the shape of vertical amplitude ratio profiles was used to determine the predominant subsurface flow field, which could be systematically categorized in purely vertical and horizontal (hyporheic, parafluvial) components. Analytical solutions to estimate water fluxes from the observed temperatures are restricted to specific boundary conditions such as a sinusoidal upper temperature boundary. In contrast numerical solutions offer higher flexibility and can handle temperature data which is characterized by irregular variations such as storm-event induced temperature changes and thus cannot readily be incorporated in analytical solutions. There are several numerical models that simulate heat transport in porous media (e.g. VS2DH, HydroGeoSphere, FEFLOW) but there can be a steep learning curve to the modelling frameworks and may therefore not readily accessible to routinely infer water fluxes between groundwater and surface water. We developed a user-friendly, straightforeward to use software to estimate water FLUXes Based On Temperatures- FLUX-BOT. FLUX-BOT is a numerical code written in MATLAB that calculates time variable vertical water fluxes in saturated sediments based on the inversion of measured temperature time series observed at multiple depths. It applies a cell-centered Crank-Nicolson implicit finite difference scheme to solve the one-dimensional heat advection-conduction equation (FLUX-BOT can be downloaded from the following web site: https://bitbucket.org/flux-bot/flux-bot). We provide applications of FLUX-BOT to generic as well as to measured temperature data to demonstrate its performance. Both, the empirical analysis of temperature amplitudes as well as the numerical inversion of measured temperature time series to estimate the vertical magnitude of water fluxes extent the suite of current heat tracing methods and may provide insight into temperature data from an additional perspective.

Nutrient transport through a Vegetative Filter Strip with subsurface drainage.

PubMed

Bhattarai, Rabin; Kalita, Prasanta Kumar; Patel, Mita Kanu

2009-04-01

The transport of nutrients and soil sediments in runoff has been recognized as a noteworthy environmental issue. Vegetative Filter Strips (VFS) have been used as one of the best management practices (BMPs) for retaining nutrients and sediments from surface runoff, thus preventing the pollutants from reaching receiving waters. However, the effectiveness of a VFS when combined with a subsurface drainage system has not been investigated previously. This study was undertaken to monitor the retention and transport of nutrients within a VFS that had a subsurface drainage system installed at a depth of 1.2 m below the soil surface. Nutrient concentrations of NO(3)-N (Nitrate Nitrogen), PO(-)(4) (Orthophosphorus), and TP (Total Phosphorus) were measured in surface water samples (entering and leaving the VFS), and subsurface outflow. Soil samples were collected and analyzed for plant available Phosphorus (Bray P1) and NO(3)-N concentrations. Results showed that PO(-)(4), NO(3)-N, and TP concentrations decreased in surface flow through the VFS. Many surface outflow water samples from the VFS showed concentration reductions of as much as 75% for PO(-)(4) and 70% for TP. For subsurface outflow water samples through the drainage system, concentrations of PO(-)(4) and TP decreased but NO(3)-N concentrations increased in comparison to concentrations in surface inflow samples. Soil samples that were collected from various depths in the VFS showed a minimal buildup of nutrients in the top soil profile but indicated a gradual buildup of nutrients at the depth of the subsurface drain. Results demonstrate that although a VFS can be very effective in reducing runoff and nutrients from surface flow, the presence of a subsurface drain underneath the VFS may not be environmentally beneficial. Such a combination may increase NO(3)-N transport from the VFS, thus invalidating the purpose of the BMP.

Ma_Miss Experiment: miniaturized imaging spectrometer for subsurface studies

NASA Astrophysics Data System (ADS)

Coradini, A.; Ammannito, E.; Boccaccini, A.; de Sanctis, M. C.; di Iorio, T.; Battistelli, E.; Capanni, A.

2011-10-01

The study of the Martian subsurface will provide important constraints on the nature, timing and duration of alteration and sedimentation processes on Mars, as well as on the complex interactions between the surface and the atmosphere. A Drilling system, coupled with an in situ analysis package, is installed on the Exomars-Pasteur Rover to perform in situ investigations up to 2m in the Mars soil. Ma_Miss (Mars Multispectral Imager for Subsurface Studies) is a spectrometer devoted to observe the lateral wall of the borehole generated by the Drilling system. The instrument is fully integrated with the Drill and shares its structure and electronics.

Characterization and quantification of suspended sediment sources to the Manawatu River, New Zealand.

PubMed

Vale, S S; Fuller, I C; Procter, J N; Basher, L R; Smith, I E

2016-02-01

Knowledge of sediment movement throughout a catchment environment is essential due to its influence on the character and form of our landscape relating to agricultural productivity and ecological health. Sediment fingerprinting is a well-used tool for evaluating sediment sources within a fluvial catchment but still faces areas of uncertainty for applications to large catchments that have a complex arrangement of sources. Sediment fingerprinting was applied to the Manawatu River Catchment to differentiate 8 geological and geomorphological sources. The source categories were Mudstone, Hill Subsurface, Hill Surface, Channel Bank, Mountain Range, Gravel Terrace, Loess and Limestone. Geochemical analysis was conducted using XRF and LA-ICP-MS. Geochemical concentrations were analysed using Discriminant Function Analysis and sediment un-mixing models. Two mixing models were used in conjunction with GRG non-linear and Evolutionary optimization methods for comparison. Discriminant Function Analysis required 16 variables to correctly classify 92.6% of sediment sources. Geological explanations were achieved for some of the variables selected, although there is a need for mineralogical information to confirm causes for the geochemical signatures. Consistent source estimates were achieved between models with optimization techniques providing globally optimal solutions for sediment quantification. Sediment sources was attributed primarily to Mudstone, ≈38-46%; followed by the Mountain Range, ≈15-18%; Hill Surface, ≈12-16%; Hill Subsurface, ≈9-11%; Loess, ≈9-15%; Gravel Terrace, ≈0-4%; Channel Bank, ≈0-5%; and Limestone, ≈0%. Sediment source apportionment fits with the conceptual understanding of the catchment which has recognized soft sedimentary mudstone to be highly susceptible to erosion. Inference of the processes responsible for sediment generation can be made for processes where there is a clear relationship with the geomorphology, but is problematic for processes which occur within multiple terrains. Copyright © 2015 Elsevier B.V. All rights reserved.

Phosphate-Induced Immobilization of Uranium in Hanford Sediments.

PubMed

Pan, Zezhen; Giammar, Daniel E; Mehta, Vrajesh; Troyer, Lyndsay D; Catalano, Jeffrey G; Wang, Zheming

2016-12-20

Phosphate can be added to subsurface environments to immobilize U(VI) contamination. The efficacy of immobilization depends on the site-specific groundwater chemistry and aquifer sediment properties. Batch and column experiments were performed with sediments from the Hanford 300 Area in Washington State and artificial groundwater prepared to emulate the conditions at the site. Batch experiments revealed enhanced U(VI) sorption with increasing phosphate addition. X-ray absorption spectroscopy measurements of samples from the batch experiments found that U(VI) was predominantly adsorbed at conditions relevant to the column experiments and most field sites (low U(VI) loadings, <25 μM), and U(VI) phosphate precipitation occurred only at high initial U(VI) (>25 μM) and phosphate loadings. While batch experiments showed the transition of U(VI) uptake from adsorption to precipitation, the column study was more directly relevant to the subsurface environment because of the high solid:water ratio in the column and the advective flow of water. In column experiments, nearly six times more U(VI) was retained in sediments when phosphate-containing groundwater was introduced to U(VI)-loaded sediments than when the groundwater did not contain phosphate. This enhanced retention persisted for at least one month after cessation of phosphate addition to the influent fluid. Sequential extractions and laser-induced fluorescence spectroscopy of sediments from the columns suggested that the retained U(VI) was primarily in adsorbed forms. These results indicate that in situ remediation of groundwater by phosphate addition provides lasting benefit beyond the treatment period via enhanced U(VI) adsorption to sediments.

Phosphate-Induced Immobilization of Uranium in Hanford Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pan, Zezhen; Giammar, Daniel E.; Mehta, Vrajesh

2016-12-20

Phosphate can be added to subsurface environments to immobilize U(VI) contamination. The efficacy of immobilization depends on the site-specific groundwater chemistry and aquifer sediment properties. Batch and column experiments were performed with sediments from the Hanford 300 Area in Washington State and artificial groundwater prepared to emulate the conditions at the site. Batch experiments revealed enhanced U(VI) sorption with increasing phosphate addition. X-ray absorption spectroscopy measurements of samples from the batch experiments found that U(VI) was predominantly adsorbed at conditions relevant to the column experiments and most field sites (low U(VI) loadings, <25 μM), and U(VI) phosphate precipitation occurred onlymore » at high initial U(VI) (>25 μM) and phosphate loadings. While batch experiments showed the transition of U(VI) uptake from adsorption to precipitation, the column study was more directly relevant to the subsurface environment because of the high solid:water ratio in the column and the advective flow of water. In column experiments, nearly six times more U(VI) was retained in sediments when phosphate-containing groundwater was introduced to U(VI)-loaded sediments than when the groundwater did not contain phosphate. This enhanced retention persisted for at least one month after cessation of phosphate addition to the influent fluid. Sequential extractions and laser-induced fluorescence spectroscopy of sediments from the columns suggested that the retained U(VI) was primarily in adsorbed forms. These results indicate that in situ remediation of groundwater by phosphate addition provides lasting benefit beyond the treatment period via enhanced U(VI) adsorption to sediments.« less

Phosphate-Induced Immobilization of Uranium in Hanford Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pan, Zezhen; Giammar, Daniel E.; Mehta, Vrajesh

2016-12-20

Phosphate can be added to subsurface environments to immobilize U(VI) contamination. The efficacy of immobilization depends on the site-specific groundwater chemistry and aquifer sediment properties. Batch and column experiments were performed with sediments from the Hanford 300 Area in Washington State and artificial groundwater prepared to emulate the conditions at the site. Batch experiments revealed enhanced U(VI) sorption with increasing phosphate addition. X-ray absorption spectroscopy measurements of samples from the batch experiments found that U(VI) was predominantly adsorbed at conditions relevant to the column experiments and most field sites (low U(VI) loadings, <25 μM), and U(VI) phosphate precipitation occurred onlymore » at high initial U(VI) (>25μM) and phosphate loadings. While batch experiments showed the transition of U(VI) uptake from adsorption to precipitation, the column study was more directly relevant to the subsurface environment because of the high solid:water ratio in the column and the advective flow of water. In column experiments, nearly six times more U(VI) was retained in sediments when phosphate-containing groundwater was introduced to U(VI)-loaded sediments than when the groundwater did not contain phosphate. This enhanced retention persisted for at least one month after cessation of phosphate addition to the influent fluid. Sequential extractions and laser-induced fluorescence spectroscopy of sediments from the columns suggested that the retained U(VI) was primarily in adsorbed forms. These results indicate that in situ remediation of groundwater by phosphate addition provides lasting benefit beyond the treatment period via enhanced U(VI) adsorption to sediments.« less

Joint Measurements Of Acoustic And Mechanical Properties For Methane Hydrate-Bearing Unconsolidated Sediments Synthesized In Laboratory

NASA Astrophysics Data System (ADS)

Yang, Z.; He, T.

2017-12-01

To more accurately explain geophysical exploration data of natural gas hydrate reservoir and to better assess the formation stability for geological or engineering hazards, it is important to comprehensively understand the geophysical and mechanical properties of hydrate-bearing unconsolidated marine sediments, which are significantly different from sea-water saturated ones. Compared to hard-to-control in-situ measurement, laboratory methods are important and feasible to investigate the parameter effects. With the new designed experimental apparatus, we measured ultrasonic velocity, resistivity and stress-strain relation of methane hydrate-bearing unconsolidated sediments. The experimental mineral mixture is prepared as the composition of sample HY-3 of core SH-7 from Shenhu area, South China Sea. It composed of 0.4 wt. % kaolinite, 23.5 wt. % silt (4 - 63 μm), 32.1 wt. % fine sand (63 - 250 μm), 29.2 wt. % medium sand (250 - 500 μm) and 14.8 wt. % coarse sand (500 - 2000 μm). The pure methane enters into the brine (NaCl salinity of 3.5%) saturated sample all around to synthesis methane hydrate. The methane hydrate saturation was calculated by methane consumption amount, which was in turn calculated by gas state equation using the measured methane pressure drop in high pressure reactor. The ultrasonic velocities and resistivity were measured frequently during methane hydrate saturation increasing to examine the velocity varying pattern, especially for S-wave velocities, which may reflect different hydrate occurrence states in sediment pores: load-bearing or not. The stress - strain curves of methane hydrate - bearing sediments showed typical elastic - plastic characteristics and were used to obtain Young's modulus, Poisson's ratio, failure strength and other mechanical parameters. With these results, we can know better about the hydrate reservoir at Shenhu area.

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy

PubMed Central

Pachiadaki, Maria G.; Rédou, Vanessa; Beaudoin, David J.; Burgaud, Gaëtan; Edgcomb, Virginia P.

2016-01-01

The deep sedimentary biosphere, extending 100s of meters below the seafloor harbors unexpected diversity of Bacteria, Archaea, and microbial eukaryotes. Far less is known about microbial eukaryotes in subsurface habitats, albeit several studies have indicated that fungi dominate microbial eukaryotic communities and fungal molecular signatures (of both yeasts and filamentous forms) have been detected in samples as deep as 1740 mbsf. Here, we compare and contrast fungal ribosomal RNA gene signatures and whole community metatranscriptomes present in sediment core samples from 6 and 95 mbsf from Peru Margin site 1229A and from samples from 12 and 345 mbsf from Canterbury Basin site U1352. The metatranscriptome analyses reveal higher relative expression of amino acid and peptide transporters in the less nutrient rich Canterbury Basin sediments compared to the nutrient rich Peru Margin, and higher expression of motility genes in the Peru Margin samples. Higher expression of genes associated with metals transporters and antibiotic resistance and production was detected in Canterbury Basin sediments. A poly-A focused metatranscriptome produced for the Canterbury Basin sample from 345 mbsf provides further evidence for active fungal communities in the subsurface in the form of fungal-associated transcripts for metabolic and cellular processes, cell and membrane functions, and catalytic activities. Fungal communities at comparable depths at the two geographically separated locations appear dominated by distinct taxa. Differences in taxonomic composition and expression of genes associated with particular metabolic activities may be a function of sediment organic content as well as oceanic province. Microscopic analysis of Canterbury Basin sediment samples from 4 and 403 mbsf produced visualizations of septate fungal filaments, branching fungi, conidiogenesis, and spores. These images provide another important line of evidence supporting the occurrence and activity of fungi in the deep subseafloor biosphere. PMID:27375571

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy.

PubMed

Pachiadaki, Maria G; Rédou, Vanessa; Beaudoin, David J; Burgaud, Gaëtan; Edgcomb, Virginia P

2016-01-01

The deep sedimentary biosphere, extending 100s of meters below the seafloor harbors unexpected diversity of Bacteria, Archaea, and microbial eukaryotes. Far less is known about microbial eukaryotes in subsurface habitats, albeit several studies have indicated that fungi dominate microbial eukaryotic communities and fungal molecular signatures (of both yeasts and filamentous forms) have been detected in samples as deep as 1740 mbsf. Here, we compare and contrast fungal ribosomal RNA gene signatures and whole community metatranscriptomes present in sediment core samples from 6 and 95 mbsf from Peru Margin site 1229A and from samples from 12 and 345 mbsf from Canterbury Basin site U1352. The metatranscriptome analyses reveal higher relative expression of amino acid and peptide transporters in the less nutrient rich Canterbury Basin sediments compared to the nutrient rich Peru Margin, and higher expression of motility genes in the Peru Margin samples. Higher expression of genes associated with metals transporters and antibiotic resistance and production was detected in Canterbury Basin sediments. A poly-A focused metatranscriptome produced for the Canterbury Basin sample from 345 mbsf provides further evidence for active fungal communities in the subsurface in the form of fungal-associated transcripts for metabolic and cellular processes, cell and membrane functions, and catalytic activities. Fungal communities at comparable depths at the two geographically separated locations appear dominated by distinct taxa. Differences in taxonomic composition and expression of genes associated with particular metabolic activities may be a function of sediment organic content as well as oceanic province. Microscopic analysis of Canterbury Basin sediment samples from 4 and 403 mbsf produced visualizations of septate fungal filaments, branching fungi, conidiogenesis, and spores. These images provide another important line of evidence supporting the occurrence and activity of fungi in the deep subseafloor biosphere.

Entrainment of bed sediment by debris flows: results from large-scale experiments

USGS Publications Warehouse

Reid, Mark E.; Iverson, Richard M.; Logan, Matthew; LaHusen, Richard G.; Godt, Jonathan W.; Griswold, Julie P.

2011-01-01

When debris flows grow by entraining sediment, they can become especially hazardous owing to increased volume, speed, and runout. To investigate the entrainment process, we conducted eight largescale experiments in the USGS debris-flow flume. In each experiment, we released a 6 m3 water-saturated debris flow across a 47-m long, ~12-cm thick bed of partially saturated sediment lining the 31º flume. Prior to release, we used low-intensity overhead sprinkling and real-time monitoring to control the bed-sediment wetness. As each debris flow descended the flume, we measured the evolution of flow thickness, basal total normal stress, basal pore-fluid pressure, and sediment scour depth. When debris flows traveled over relatively dry sediment, net scour was minimal, but when debris flows traveled over wetter sediment (volumetric water content > 0.22), debris-flow volume grew rapidly and flow speed and runout were enhanced. Data from scour sensors showed that entrainment occurred by rapid (5-10 cm/s), progressive scour rather than by mass failure at depth. Overriding debris flows rapidly generated high basal pore-fluid pressures when they loaded and deformed bed sediment, and in wetter beds these pressures approached lithostatic levels. Reduction of intergranular friction within the bed sediment thereby enhanced scour efficiency, entrainment, and runout.

Redox Trapping of Arsenic During Groundwater Discharge in Sediments from the Meghna Riverbank in Bangladesh

DOE Office of Scientific and Technical Information (OSTI.GOV)

Datta, S.; Mailloux, B; Jung, H

2009-01-01

Groundwater arsenic (As) is elevated in the shallow Holocene aquifers of Bangladesh. In the dry season, the shallow groundwater discharges to major rivers. This process may influence the chemistry of the river and the hyporheic zone sediment. To assess the fate of As during discharge, surface (0-5 cm) and subsurface (1-3 m) sediment samples were collected at 9 sites from the bank of the Meghna River along a transect from its northern source (25 degrees N) to the Bay of Bengal (22.5 degrees N). Bulk As concentrations of surface sediment averaged 16 {+-} 7 mg/kg (n = 9). Subsurface sedimentmore » contained higher mean concentrations of As of 4,000 mg/kg (n = 14), ranging from 1 to 23,000 mg/kg As, with >100 mg/kg As measured at 8 sites. X-ray absorption near-edge structure spectroscopy indicated that As was mainly arsenate and arsenite, not As-bearing sulfides. We hypothesize that the elevated sediment As concentrations form as As-rich groundwater discharges to the river, and enters a more oxidizing environment. A significant portion of dissolved As sorbs to iron-bearing minerals, which form a natural reactive barrier. Recycling of this sediment-bound As to the Ganges-Brahmaputra-Meghna Delta aquifer provides a potential source of As to further contaminate groundwater. Furthermore, chemical fluxes from groundwater discharge from the Ganges-Brahmaputra-Meghna Delta may be less than previous estimates because this barrier can immobilize many elements.« less

Uranium redox transition pathways in acetate-amended sediments

USGS Publications Warehouse

Bargar, John R.; Williams, Kenneth H.; Campbell, Kate M.; Long, Philip E.; Stubbs, Joanne E.; Suvorova, Elenal I.; Lezama-Pacheco, Juan S.; Alessi, Daniel S.; Stylo, Malgorzata; Webb, Samuel M.; Davis, James A.; Giammar, Daniel E.; Blue, Lisa Y.; Bernier-Latmani, Rizlan

2013-01-01

Redox transitions of uranium [from U(VI) to U(IV)] in low-temperature sediments govern the mobility of uranium in the environment and the accumulation of uranium in ore bodies, and inform our understanding of Earth’s geochemical history. The molecular-scale mechanistic pathways of these transitions determine the U(IV) products formed, thus influencing uranium isotope fractionation, reoxidation, and transport in sediments. Studies that improve our understanding of these pathways have the potential to substantially advance process understanding across a number of earth sciences disciplines. Detailed mechanistic information regarding uranium redox transitions in field sediments is largely nonexistent, owing to the difficulty of directly observing molecular-scale processes in the subsurface and the compositional/physical complexity of subsurface systems. Here, we present results from an in situ study of uranium redox transitions occurring in aquifer sediments under sulfate-reducing conditions. Based on molecular-scale spectroscopic, pore-scale geochemical, and macroscale aqueous evidence, we propose a biotic–abiotic transition pathway in which biomass-hosted mackinawite (FeS) is an electron source to reduce U(VI) to U(IV), which subsequently reacts with biomass to produce monomeric U(IV) species. A species resembling nanoscale uraninite is also present, implying the operation of at least two redox transition pathways. The presence of multiple pathways in low-temperature sediments unifies apparently contrasting prior observations and helps to explain sustained uranium reduction under disparate biogeochemical conditions. These findings have direct implications for our understanding of uranium bioremediation, ore formation, and global geochemical processes.

PARAMETER ESTIMATION OF TWO-FLUID CAPILLARY PRESSURE-SATURATION AND PERMEABILITY FUNCTIONS

EPA Science Inventory

Capillary pressure and permeability functions are crucial to the quantitative description of subsurface flow and transport. Earlier work has demonstrated the feasibility of using the inverse parameter estimation approach in determining these functions if both capillary pressure ...

Spectral Induced Polarization Response of Unconsolidated Saturated Sand and Surfactant Solutions

EPA Science Inventory

Dense non-aqueous phase liquids (DNAPL), such as chlorinated solvents, are common groundwater contaminants. Traditional pump-and-treat methods are often not effective at removing residual DNAPL from the subsurface. Surfactant-enhanced aquifer remediation is a promising remediatio...

Observed and simulated hydrologic response for a first-order catchment during extreme rainfall 3 years after wildfire disturbance

USGS Publications Warehouse

Ebel, Brian A.; Rengers, Francis K.; Tucker, Gregory E.

2016-01-01

Hydrologic response to extreme rainfall in disturbed landscapes is poorly understood because of the paucity of measurements. A unique opportunity presented itself when extreme rainfall in September 2013 fell on a headwater catchment (i.e., <1 ha) in Colorado, USA that had previously been burned by a wildfire in 2010. We compared measurements of soil-hydraulic properties, soil saturation from subsurface sensors, and estimated peak runoff during the extreme rainfall with numerical simulations of runoff generation and subsurface hydrologic response during this event. The simulations were used to explore differences in runoff generation between the wildfire-affected headwater catchment, a simulated unburned case, and for uniform versus spatially variable parameterizations of soil-hydraulic properties that affect infiltration and runoff generation in burned landscapes. Despite 3 years of elapsed time since the 2010 wildfire, observations and simulations pointed to substantial surface runoff generation in the wildfire-affected headwater catchment by the infiltration-excess mechanism while no surface runoff was generated in the unburned case. The surface runoff generation was the result of incomplete recovery of soil-hydraulic properties in the burned area, suggesting recovery takes longer than 3 years. Moreover, spatially variable soil-hydraulic property parameterizations produced longer duration but lower peak-flow infiltration-excess runoff, compared to uniform parameterization, which may have important hillslope sediment export and geomorphologic implications during long duration, extreme rainfall. The majority of the simulated surface runoff in the spatially variable cases came from connected near-channel contributing areas, which was a substantially smaller contributing area than the uniform simulations.

Third-generation site characterization: Cryogenic core collection, nuclear magnetic resonance, and electrical resistivity

NASA Astrophysics Data System (ADS)

Kiaalhosseini, Saeed

In modern contaminant hydrology, management of contaminated sites requires a holistic characterization of subsurface conditions. Delineation of contaminant distribution in all phases (i.e., aqueous, non-aqueous liquid, sorbed, and gas), as well as associated biogeochemical processes in a complex heterogeneous subsurface, is central to selecting effective remedies. Arguably, a factor contributing to the lack of success of managing contaminated sites effectively has been the limitations of site characterization methods that rely on monitoring wells and grab sediment samples. The overarching objective of this research is to advance a set of third-generation (3G) site characterization methods to overcome shortcomings of current site characterization techniques. 3G methods include 1) cryogenic core collection (C3) from unconsolidated geological subsurface to improve recovery of sediments and preserving key attributes, 2) high-throughput analysis (HTA) of frozen core in the laboratory to provide high-resolution, depth discrete data of subsurface conditions and processes, 3) resolution of non-aqueous phase liquid (NAPL) distribution within the porous media using a nuclear magnetic resonance (NMR) method, and 4) application of a complex resistivity method to track NAPL depletion in shallow geological formation over time. A series of controlled experiments were conducted to develop the C 3 tools and methods. The critical aspects of C3 are downhole circulation of liquid nitrogen via a cooling system, the strategic use of thermal insulation to focus cooling into the core, and the use of back pressure to optimize cooling. The C3 methods were applied at two contaminated sites: 1) F.E. Warren (FEW) Air Force Base near Cheyenne, WY and 2) a former refinery in the western U.S. The results indicated that the rate of core collection using the C3 methods is on the order of 30 foot/day. The C3 methods also improve core recovery and limits potential biases associated with flowing sands. HTA of frozen core was employed at the former refinery and FEW. Porosity and fluid saturations (i.e., aqueous, non-aqueous liquid, and gas) from the former refinery indicate that given in situ freezing, the results are not biased by drainage of pore fluids from the core during sample collection. At FEW, a comparison between the results of HTA of the frozen core collected in 2014 and the results of site characterization using unfrozen core, (second-generation (2G) methods) at the same locations (performed in 2010) indicate consistently higher contaminant concentrations using C 3. Many factors contribute to the higher quantification of contaminant concentrations using C3. The most significant factor is the preservation of the sediment attributes, in particular, pore fluids and volatile organic compounds (VOCs) in comparison to the unfrozen conventional sediment core. The NMR study was performed on laboratory-fabricated sediment core to resolve NAPL distribution within the porous media qualitatively and quantitatively. The fabricated core consisted of Colorado silica sand saturated with deionized water and trichloroethylene (TCE). The cores were scanned with a BRUKER small-animal scanner (2.3 Tesla, 100 MHz) at 20 °C and while the core was frozen at -25 °C. The acquired images indicated that freezing the water within the core suppressed the NMR signals of water-bound hydrogen. The hydrogen associated with TCE was still detectable since the TCE was in its liquid state (melting point of TCE is -73 °C). Therefore, qualitative detection of TCE within the sediment core was performed via the NMR scanning by freezing the water. A one-dimensional NMR scanning method was used for quantification of TCE mass distribution within the frozen core. However, the results indicated inconsistency in estimating the total TCE mass within the porous media. Downhole NMR logging was performed at the former refinery in the western U.S. to detect NAPL and to discriminate NAPL from water in the formation. The results indicated that detection of NMR signals to discriminate NAPL from water is compromised by the noise stemming from the active facilities and/or power lines passing over the site. A laboratory experiment was performed to evaluate the electrical response of unconsolidated porous media through time (30 days) while NAPL was being depleted. Sand columns (Colorado silica sand) contaminated with methyl tert-butyl ether (MTBE, a light non-aqueous phase liquid (LNAPL)) were studied. A multilevel electrode system was used to measure electrical resistivity of impacted sand by imposing alternative current. The trend of reduction in resistivity through the depth of columns over time followed depletion of LNAPL by volatilization. Finally, a field experiment was performed at the former refinery in the western U.S. to track natural losses of LNAPL over time. Multilevel systems consisting of water samplers, thermocouples, and electrodes were installed at a clean zone (background zone) and an LNAPL-impacted zone. In situ measurements of complex resistivity and temperature were taken and water sampling was performed for each depth (from 3 to 14 feet below the ground surface at one-foot spacing) within almost a year. At both locations, the results indicated decreases in apparent resistivity below the water table over time. This trend was supported by the geochemistry of the pore fluids. Overall, results indicate that application of the electrical resistivity method to track LNAPL depletion at field sites is difficult due to multiple conflicting factors affecting the geoelectrical response of LNAPL-impacted zones over time.

Quantification of microbial activity in subsurface environments using a hydrogenase enzyme assay

NASA Astrophysics Data System (ADS)

Adhikari, R. R.; Nickel, J.; Kallmeyer, J.

2012-04-01

The subsurface biosphere is the largest microbial ecosystem on Earth. Despite its large size and extensive industrial exploitation, very little is known about the role of microbial activity in the subsurface. Subsurface microbial activity plays a fundamental role in geochemical cycles of carbon and other biologically important elements. How the indigenous microbial communities are supplied with energy is one of the most fundamental questions in subsurface research. It is still an enigma how these communities can survive with such recalcitrant carbon over geological time scales. Despite its usually very low concentration, hydrogen is an important element in subsurface environments. Heterotrophic and chemoautotrophic microorganisms use hydrogen in their metabolic pathways; they either obtain protons from the radiolysis of water and/or cleavage of hydrogen generated by the alteration of basaltic crust, or they dispose of protons by formation of water. Hydrogenase (H2ase) is a ubiquitous intracellular enzyme that catalyzes the interconversion of molecular hydrogen and/or water into protons and electrons. The protons are used for the synthesis of ATP, thereby coupling energy-generating metabolic processes to electron acceptors such as carbon dioxide or sulfate. H2ase activity can therefore be used as a measure for total microbial activity as it targets a key metabolic compound rather than a specific turnover process. Using a highly sensitive tritium assay we measured H2ase enzyme activity in the organic-rich sediments of Lake Van, a saline, alkaline lake in eastern Turkey and in marine subsurface sediments of the Barents Sea. Additionally, sulfate reduction rates (SRRs) were measured to compare the results of the H2ase enzyme assay with the quantitatively most important electron acceptor process. H2ase activity was found at all sites, measured values and distribution of activity varied widely with depth and between sites. At the Lake Van sites H2ase activity ranged from ca. 20 mmol H2 cm-3 d-1 close to the sediment-water interface to 0.5 mmol H2 cm-3 d-1 at a depth of 0.8 m. In samples from the Barents Sea H2ase activity ranged between 0.1 to 2.5 mmol H2 cm-3 d-1 down to a depth of 1.60 m. At all sites the SRR profile followed the H2ase activity profile until SRR declined to values close to the minimum detection limit (~10 pmol cm-3 d-1). H2ase activity increased again after SRR declined, indicating that other microbial processes are becoming quantitatively more important. The H2ase and SRR data show that our assay has a potential to become a valuable tool to measure total subsurface microbial activity.

Zonal characterization of hillslope erosion processes in a semi-arid high mountain catchment

NASA Astrophysics Data System (ADS)

Torres, Raquel; Millares, Agustín; Aguilar, Cristina; Moñino, Antonio; Ángel Losada, Miguel; José Polo, María

2013-04-01

Mediterranean and semi-arid catchments, generally suffer heterogeneous erosive processes at different spatio-temporal scales which produce, in a synergistic manner, a large amount of sediment supply. In mountainous catchments, the influence of pluvio-nival hydrological regime leads to a clear subdivision into homogeneous zones regarding the nature of hillslope processes. Here, a distinction could be addressed with 1) subsurface erosion due to saturated soil by intense snowmelt pulses and 2) steepest mid-mountain soil loss with rill/interrill, small-scale landslides and ephemeral or permanent gullying. Furthermore, the associated channels in these areas are formed by wide alluvial floodplains with important bedload contributions. This complexity conditions the evaluation of erosion and monitoring at catchment scale with elevated costs in time, devices and staff. The catchment of the Guadalfeo river encloses 1200 km², with important presence of snow in the summits height on its right margin, and semiarid low range hills with very erodible soils on its left margin. Gully erosion, landslides and stream bed-load processes, extremely actives in this area, are responsible of a real problem of soil loss and desertification with a high associated cost. This work suggests a methodology for the zonal assessment of different erosive processes taking into account the described heterogeneity and the reduction of research costs. To do this, high resolution bathymetric and topographic surveys supported in a reservoir (110 hm3) allowed the differentiation of bedload and suspended sediments as both are deposited in different locations and hence the validation of the hillslope sediment yield. In parallel, measurements in homogeneous areas were selected in order to obtain zonal results to achieve the representative processes involved. The use of portable samplers allows the remote changing of sampling routines, and thus to capture the temporal scale of the processes and the associated forcing agents. The obtained results validate the proposed methodology with adjustments/fitting between measured suspended sediment regarding the increase of volume registered at the dam. Furthermore, the measures obtained reveal a clear zonal differentiation in sediment yield which represents the heterogeneous dynamic of the processes involved.

Modeling sedimentation-filtration basins for urban watersheds using Soil and Water Assessment Tool

USDA-ARS?s Scientific Manuscript database

Sedimentation-filtration (SedFil) basins are one of the storm-water best management practices (BMPs) that are intended to mitigate water quality problems in urban creeks and rivers. A new physically based model of variably saturated flows was developed for simulating flow and sediment in SedFils wi...

Chemical and biological availability of hydrocarbons in urban harbor sediments

USGS Publications Warehouse

LeBlanc, L.A.; Brownawell, Bruce J.

2002-01-01

The degradation of saturated and aromatic hydrocarbons was studied in batch slurry experiments conducted with field-aged sediments, highly impacted by hydrocarbon pollution. Experiments focused on examining the effects of desorption limitations to hydrocarbon mineralization and degradation. Degradation of PAH (e.g., naphthalene, fluorene, acenaphthene) and saturated hydrocarbons was examined in field-aged sediments collected from four sites in greater NY Harbor and western Long Island Sound. The sites were Rikers Island in far western Long Island Sound, Williamsburg Bridge in the East River, Shooters Island in the Arthur Kill, and the Kill Van Kull off Bayonne, New Jersey. Patterns of hydrocarbon desorption and degradation in weathered sediments were complicated by the mixed combustion and oil-derived hydrocarbon sources, and differed markedly from patterns seen in sediments following an oil spill. Rates of degradation in experiments with spiked sediments, especially over short timescales, did not appear to be limited by rates of desorption. This is an abstract of a paper presented at the 224th ACS National Meeting (Boston, MA 8/18-22/2002).

The role of water exchange between a stream channel and its hyporheic zone in nitrogen cycling at the terrestrial-aquatic interface

USGS Publications Warehouse

Triska, F.J.; Duff, J.H.; Avanzino, R.J.

1993-01-01

The subsurface riparian zone was examined as an ecotone with two interfaces. Inland is a terrestrial boundary, where transport of water and dissolved solutes is toward the channel and controlled by watershed hydrology. Streamside is an aquatic boundary, where exchange of surface water and dissolved solutes is bi-directional and flux is strongly influenced by channel hydraulics. Streamside, bi-directional exchange of water was qualitatively defined using biologically conservative tracers in a third order stream. In several experiments, penetration of surface water extended 18 m inland. Travel time of water from the channel to bankside sediments was highly variable. Subsurface chemical gradients were indirectly related to the travel time. Sites with long travel times tended to be low in nitrate and DO (dissolved oxygen) but high in ammonium and DOC (dissolved organic carbon). Sites with short travel times tended to be high in nitrate and DO but low in ammonium and DOC. Ammonium concentration of interstitial water also was influenced by sorption-desorption processes that involved clay minerals in hyporheic sediments. Denitrification potential in subsurface sediments increased with distance from the channel, and was limited by nitrate at inland sites and by DO in the channel sediments. Conversely, nitrification potential decreased with distance from the channel, and was limited by DO at inland sites and by ammonium at channel locations. Advection of water and dissolved oxygen away from the channel resulted in an oxidized subsurface habitat equivalent to that previously defined as the hyporheic zone. The hyporheic zone is viewed as stream habitat because of its high proportion of surface water and the occurrence of channel organisms. Beyond the channel's hydrologic exchange zone, interstitial water is often chemically reduced. Interstitial water that has not previously entered the channel, groundwater, is viewed as a terrestrial component of the riparian ecotone. Thus, surface water habitats may extend under riparian vegetation, and terrestrial groundwater habitats may be found beneath the stream channel. ?? 1993 Kluwer Academic Publishers.

Carbon Characteristics and Biogeochemical Processes of Uranium Accumulating Organic Matter Rich Sediments in the Upper Colorado River Basin

NASA Astrophysics Data System (ADS)

Boye, K.; Noel, V.; Tfaily, M. M.; Dam, W. L.; Bargar, J.; Fendorf, S. E.

2015-12-01

Uranium plume persistence in groundwater aquifers is a problem on several former ore processing sites on floodplains in the upper Colorado River Basin. Earlier observations by our group and others at the Old Rifle Site, CO, have noted that U concentrations are highest in organic rich, fine-grained, and, therefore, diffusion limited sediment material. Due to the constantly evolving depositional environments of floodplains, surficial organic matter may become buried at various stages of decomposition, through sudden events such as overbank flooding and through the slower progression of river meandering. This creates a discontinuous subsurface distribution of organic-rich sediments, which are hotspots for microbial activity and thereby central to the subsurface cycling of contaminants (e.g. U) and biologically relevant elements (e.g. C, N, P, Fe). However, the organic matter itself is poorly characterized. Consequently, little is known about its relevance in driving biogeochemical processes that control U fate and transport in the subsurface. In an investigation of soil/sediment cores from five former uranium ore processing sites on floodplains distributed across the Upper Colorado River Basin we confirmed consistent co-enrichment of U with organic-rich layers in all profiles. However, using C K-edge X-ray Absorption Spectroscopy (XAS) coupled with Fourier-Transformed Ion-Cyclotron-Resonance Mass-Spectroscopy (FT-ICR-MS) on bulk sediments and density-separated organic matter fractions, we did not detect any chemical difference in the organic rich sediments compared to the surrounding coarser-grained aquifer material within the same profile, even though there were differences in organic matter composition between the 5 sites. This suggests that U retention and reduction to U(IV) is independent of C chemical composition on the bulk scale. Instead it appears to be the abundance of organic matter in combination with a limited O2 supply in the fine-grained material that stimulate anaerobic microbial processes responsible for U enrichment. Thus, the chemical composition of organic matter is subordinate to the physical environment and total organic matter content in controlling U reduction and retention processes.

Detailed sections from auger holes in the Elizabethtown 1:100,000-scale map sheet, North Carolina

USGS Publications Warehouse

Weems, Robert E.; Lewis, William C.; Murray, Joseph H.; Queen, David B.; Grey, Jeffrey B.; DeJong, Benjamin D.

2011-01-01

The Elizabethtown 1:100,000 quadrangle is in the west-central part of the Coastal Plain of southeastern North Carolina. The Coastal Plain, in this region, consists mostly of unlithified sediments that range in age from Late Cretaceous to Holocene. These sediments lie with profound unconformity on complexly deformed metamorphic and igneous rocks similar to rocks found immediately to the west in the Piedmont province. Coastal Plain sediments generally dip gently to the southeast or south and reach a maximum thickness of about 850 feet (ft) in the extreme southeast part of the map area. The gentle southerly and southeasterly dip is disrupted in several areas by faulting. The U.S. Geological Survey recovered one core and augered 196 research test holes in the Elizabethtown 1:100,000 quadrangle to supplement sparse outcrop data in the map area. The recovered sediments were studied and data from these sediments recorded to determine the lithologic characteristics, spatial distribution, and temporal framework of the represented Coastal Plain stratigraphic units. These test holes were critical for accurately determining the distribution of major geologic units and the position of unit boundaries. The detailed descriptions of the subsurface data can be used by geologists, hydrologists, engineers, and community planners to provide a detailed shallow-subsurface stratigraphic framework for the Elizabethtown map region.

Interpreting stream sediment fingerprints against primary and secondary source signatures in agricultural catchments

NASA Astrophysics Data System (ADS)

Blake, Will H.; Haley, Steve; Smith, Hugh G.; Taylor, Alex; Goddard, Rupert; Lewin, Sean; Fraser, David

2013-04-01

Many sediment fingerprinting studies adopt a black box approach to source apportionment whereby the properties of downstream sediment are compared quantitatively to the geochemical fingerprints of potential catchment sources without consideration of potential signature development or modification during transit. Working within a source-pathway-receptor framework, this study aimed to undertake sediment source apportionment within 6 subcatchments of an agricultural river basin with specific attention to the potential role of contaminants (vehicle emissions and mine waste) in development of stream sediment signatures. Fallout radionuclide (FRN) and geochemical fingerprinting methods were adopted independently to establish source signatures for primary sediment sources of surface and subsurface soil materials under various land uses plus reworked mine and 'secondary' soil material deposited, in transit, along road networks. FRN data demonstrated expected variability between surface soil (137Cs = 14 ± 3 Bq kg-1; 210Pbxs = 40 ± 7 Bq kg-1) and channel bank materials (137Cs = 3 ± 1 Bq kg-1; 210Pbxs = 24 ± 5 Bq kg-1) but road transported soil material was considerably elevated in 210Pbxs (up to 673 ± 51 Bq kg-1) due to sediment interaction with pluvial surface water within the road network. Geochemical discrimination between surface and subsurface soil materials was dominated by alkaline earth and alkali metals e.g. Ba, Rb, Ca, K, Mg which are sensitive to weathering processes in soil. Magnetic susceptibility and heavy metals were important discriminators of road transported material which demonstrated transformation of the signatures of material transported via the road network. Numerical unmixing of stream sediment indicated that alongside channel bank erosion, road transported material was an important component in some systems in accord with FRN evidence. While mining spoil also ranked as a significant source in an affected catchment, perhaps related to legacy sediment, the potential role of dissolved metal leaching and subsequent sediment-water interaction within the channel on signature modification remained unclear. Consideration of sediment signature modification en route from primary source to stream elucidated important information regarding sediment transfer pathways and dynamics relevant to sediment management decisions. Further work on sediment-water interactions and potential for signature transformation in the channel environment is required.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Guohui; Qafoku, Nikolla; Lawter, Amanda R.

A series of batch and column experiments combined with solid phase characterization studies (i.e., quantitative x-ray diffraction and wet chemical extractions) were conducted to address a variety of scientific issues and evaluate the impacts of the potential leakage of carbon dioxide (CO2) from deep subsurface storage reservoirs. The main objective was to gain an understanding of how CO2 gas influences: 1) the aqueous phase pH; and 2) mobilization of major, minor, and trace elements from minerals present in an aquifer overlying potential CO2 sequestration subsurface repositories. Rocks and slightly weathered rocks representative of an unconfined, oxidizing carbonate aquifer within themore » continental US, i.e., the Edwards aquifer in Texas, were used in these studies. These materials were exposed to a CO2 gas stream or were leached with a CO2-saturated influent solution to simulate different CO2 gas leakage scenarios, and changes in aqueous phase pH and chemical composition were measured in the liquid samples collected at pre-determined experimental times (batch experiments) or continuously (column experiments). The results from the strong acid extraction tests confirmed that in addition to the usual elements present in most soils, rocks, and sediments, the Edward aquifer samples contain As, Cd, Pb, Cu, and occasionally Zn, which may potentially be mobilized from the solid to the aqueous phase during or after exposure to CO2. The results from the batch and column experiments confirmed the release of major chemical elements into the contacting aqueous phase (such as Ca, Mg, Ba, Sr, Si, Na, and K); the mobilization and possible rapid immobilization of minor elements (such as Fe, Al, and Mn), which are able to form highly reactive secondary phases; and sporadic mobilization of only low concentrations of trace elements (such as As, Cd, Pb, Cu, Zn, Mo, etc.). The results from this experimental research effort will help in developing a systematic understanding of how CO2 leakage is likely to influence pertinent geochemical processes (e.g., dissolution/precipitation, sorption/desorption) in the aquifer sediments and will support site selection, risk assessment, policy-making, and public education efforts associated with geologic carbon sequestration.« less

Hydro-bio-geomechanical properties of hydrate-bearing sediments from Nankai Trough

USGS Publications Warehouse

Santamarina, J.C.; Dai, Shifeng; Terzariol, M.; Jang, Jeonghwan; Waite, William F.; Winters, William J.; Nagao, J.; Yoneda, J.; Konno, Y.; Fujii, T.; Suzuki, K.

2015-01-01

Natural hydrate-bearing sediments from the Nankai Trough, offshore Japan, were studied using the Pressure Core Characterization Tools (PCCTs) to obtain geomechanical, hydrological, electrical, and biological properties under in situ pressure, temperature, and restored effective stress conditions. Measurement results, combined with index-property data and analytical physics-based models, provide unique insight into hydrate-bearing sediments in situ. Tested cores contain some silty-sands, but are predominantly sandy- and clayey-silts. Hydrate saturations Sh range from 0.15 to 0.74, with significant concentrations in the silty-sands. Wave velocity and flexible-wall permeameter measurements on never-depressurized pressure-core sediments suggest hydrates in the coarser-grained zones, the silty-sands where Sh exceeds 0.4, contribute to soil-skeletal stability and are load-bearing. In the sandy- and clayey-silts, where Sh < 0.4, the state of effective stress and stress history are significant factors determining sediment stiffness. Controlled depressurization tests show that hydrate dissociation occurs too quickly to maintain thermodynamic equilibrium, and pressure–temperature conditions track the hydrate stability boundary in pure-water, rather than that in seawater, in spite of both the in situ pore water and the water used to maintain specimen pore pressure prior to dissociation being saline. Hydrate dissociation accompanied with fines migration caused up to 2.4% vertical strain contraction. The first-ever direct shear measurements on never-depressurized pressure-core specimens show hydrate-bearing sediments have higher sediment strength and peak friction angle than post-dissociation sediments, but the residual friction angle remains the same in both cases. Permeability measurements made before and after hydrate dissociation demonstrate that water permeability increases after dissociation, but the gain is limited by the transition from hydrate saturation before dissociation to gas saturation after dissociation. In a proof-of-concept study, sediment microbial communities were successfully extracted and stored under high-pressure, anoxic conditions. Depressurized samples of these extractions were incubated in air, where microbes exhibited temperature-dependent growth rates.

Microbial production and oxidation of methane in deep subsurface

NASA Astrophysics Data System (ADS)

Kotelnikova, Svetlana

2002-10-01

The goal of this review is to summarize present studies on microbial production and oxidation of methane in the deep subterranean environments. Methane is a long-living gas causing the "greenhouse" effect in the planet's atmosphere. Earlier, the deep "organic carbon poor" subsurface was not considered as a source of "biogenic" methane. Evidence of active methanogenesis and presence of viable methanogens including autotrophic organisms were obtained for some subsurface environments including water-flooded oil-fields, deep sandy aquifers, deep sea hydrothermal vents, the deep sediments and granitic groundwater at depths of 10 to 2000 m below sea level. As a rule, the deep subterranean microbial populations dwell at more or less oligotrophic conditions. Molecular hydrogen has been found in a variety of subsurface environments, where its concentrations were significantly higher than in the tested surface aquatic environments. Chemolithoautotrophic microorganisms from deep aquifers that could grow on hydrogen and carbon dioxide can act as primary producers of organic carbon, initiating heterotrophic food chains in the deep subterranean environments independent of photosynthesis. "Biogenic" methane has been found all over the world. On the basis of documented occurrences, gases in reservoirs and older sediments are similar and have the isotopic character of methane derived from CO 2 reduction. Groundwater representing the methanogenic end member are characterized by a relative depletion of dissolved organic carbon (DOC) in combination with an enrichment in 13C in inorganic carbon, which is consistent with the preferential reduction of 12CO 2 by autotrophic methanogens or acetogens. The isotopic composition of methane formed via CO 2 reduction is controlled by the δ13C of the original CO 2 substrate. Literature data shows that CH 4 as heavy as -40‰ or -50‰ can be produced by the microbial reduction of isotopically heavy CO 2. Produced methane may be oxidized microbially to carbon dioxide. Microbial methane oxidation is a biogeochemical process that limits the release of methane, a greenhouse gas from anaerobic environments. Anaerobic methane oxidation plays an important role in marine sediments. Similar processes may take place in deep subsurface and thus fuel the deep microbial community. Organisms or consortia responsible for anaerobic methane oxidation have not yet been cultured, although diverse aerobic methanotrophs have been isolated from a variety of underground niches. The presence of aerobic methanotrophs in the anoxic subsurface remains to be explained. The presence of methane in the deep subsurface have been shown all over the world. The flux of gases between the deep subsurface and the atmosphere is driven by the concentration gradient from depth to the atmosphere. However, methane is consumed by methanotrophs on the way of its evolution in oxidized environments and is transformed to organic form, available for further microbial processing. When the impact of subsurface environments to global warming is estimated, it is necessary to take into account the activity of methane-producing Archaea and methane-oxidizing biofilters in groundwater. Microbial production and oxidation of methane is involved in the carbon cycle in the deep subsurface environments.

The impact of pre-restoration land-use and disturbance on sediment structure, hydrology and the sediment geochemical environment in restored saltmarshes.

PubMed

Spencer, Kate L; Carr, Simon J; Diggens, Lucy M; Tempest, James A; Morris, Michelle A; Harvey, Gemma L

2017-06-01

Saltmarshes are being lost or degraded as a result of human activity resulting in loss of critical ecosystem services including the provision of wild species diversity, water quality regulation and flood regulation. To compensate, saltmarshes are being restored or re-created, usually driven by legislative requirements for increased habitat diversity, flood regulation and sustainable coastal defense. Yet, there is increasing evidence that restoration may not deliver anticipated ecosystem services; this is frequently attributed to poor drainage and sediment anoxia. However, physical sediment characteristics, hydrology and the sediment geochemical environment are rarely examined in restoration schemes, despite such factors being critical for plant succession. This study presents the novel integration of 3D-computed X-ray microtomography to quantify sediment structure and porosity, with water level and geochemical data to understand the impact of pre-restoration land use and disturbance on the structure and functioning of restored saltmarshes. The study combines a broad-scale investigation of physical sediment characteristics in nine de-embanked saltmarshes across SE England, with an intensive study at one site examining water levels, sediment structure and the sediment geochemical environment. De-embankment does not restore the hydrological regime, or the physical/chemical framework in the saltmarshes and evidence of disturbance includes a reduction in microporosity, pore connectivity and water storage capacity, a lack of connectivity between the sub-surface environment and overlying floodwaters, and impeded sub-surface water flow and drainage. This has significant consequences for the sediment geochemical environment. This disturbance is evident for at least two decades following restoration and is likely to be irreversible. It has important implications for plant establishment in particular, ecosystem services including flood regulation, nutrient cycling and wild species diversity and for future restoration design. Copyright © 2016 Elsevier B.V. All rights reserved.

PARTITIONING INTERWELL TRACER TEST FOR NAPL SOURCE CHARACTERIZATION: A GENERAL OVERVIEW

EPA Science Inventory

Innovative and nondestructive characterization techniques have been developed to locate and quantify nonaqueous phase liquids (NAPLs) in the vadose and saturated zones in the subsurface environment. One such technique is the partitioning interwell tracer test (PITT). The PITT i...

Biogeochemical Cycle of Methanol in Anoxic Deep-Sea Sediments

PubMed Central

Yanagawa, Katsunori; Tani, Atsushi; Yamamoto, Naoya; Hachikubo, Akihiro; Kano, Akihiro; Matsumoto, Ryo; Suzuki, Yohey

2016-01-01

The biological flux and lifetime of methanol in anoxic marine sediments are largely unknown. We herein reported, for the first time, quantitative methanol removal rates in subsurface sediments. Anaerobic incubation experiments with radiotracers showed high rates of microbial methanol consumption. Notably, methanol oxidation to CO2 surpassed methanol assimilation and methanogenesis from CO2/H2 and methanol. Nevertheless, a significant decrease in methanol was not observed after the incubation, and this was attributed to the microbial production of methanol in parallel with its consumption. These results suggest that microbial reactions play an important role in the sources and sinks of methanol in subseafloor sediments. PMID:27301420

Spatial variability of sedimentary interbed properties near the Idaho Nuclear Technology and Engineering Center at the Idaho National Engineering and Environmental Laboratory, Idaho

USGS Publications Warehouse

Winfield, Kari A.

2003-01-01

The subsurface at the Idaho National Engineering and Environmental Laboratory (INEEL) is complex, comprised primarily of thick, fractured basalt flows interbedded with thinner sedimentary intervals. The unsaturated zone can be as thick as 200 m in the southwestern part of the INEEL. The Vadose Zone Research Park (VZRP), located approximately 10 km southwest of the Idaho Nuclear Technology and Engineering Center (INTEC), was established in 2001 to study the subsurface of a relatively undisturbed part of the INEEL. Waste percolation ponds for the INTEC were relocated to the VZRP due to concerns that perched water within the vadose zone under the original infiltration ponds (located immediately south of the INTEC) could contribute to migration of contaminants to the Snake River Plain aquifer. Knowledge of the spatial distribution of texture and hydraulic properties is important for developing a better understanding of subsurface flow processes within the interbeds, for example, by identifying low permeability layers that could lead to the formation of perched ground-water zones. Because particle-size distributions are easier to measure than hydraulic properties, particle size serves as an analog for determining how the unsaturated hydraulic properties vary both vertically within particular interbeds and laterally within the VZRP. As part of the characterization program for the subsurface at the VZRP, unsaturated and saturated hydraulic properties were measured on 10 core samples from six boreholes. Bulk properties, including particle size, bulk density, particle density, and specific surface area, were determined on material from the same depth intervals as the core samples, with an additional 66 particle- size distributions measured on bulk samples from the same boreholes. From lithologic logs of the 32 boreholes at the VZRP, three relatively thick interbeds (in places up to 10 m thick) were identified at depths of 35, 45, and 55 m below land surface. The 35-m interbed extends laterally over a distance of at least 900 m from the Big Lost River to the new percolation pond area of the VZRP. Most wells within the VZRP were drilled to depths less than 50 m, making it difficult to infer the lateral extent of the 45-m and 55-m interbeds. The 35-m interbed is uniform in texture both vertically and laterally; the 45-m interbed coarsens upward; and the 55-m interbed contains alternating coarse and fine layers. Seventy-one out of 90 samples were silt loams and 9 out of 90 samples were classified as either sandy loams, loamy sands, or sands. The coarsest samples were located within the 45-m and 55-m interbeds of borehole ICPP-SCI-V-215, located near the southeast corner of the new percolation pond area. At the tops of some interbeds, baked-zone intervals were identified by their oxidized color (yellowish red to red) compared to the color of the underlying non-baked material (pale yellow to brown). The average geometric mean particle diameter of baked-zone intervals was only slightly coarser, in some cases, than the underlying non-baked sediment. This is likely due to both depositional differences between the top and bottom of the interbeds and the presence of small basalt clasts in the sediment. Core sample hydraulic properties from baked zones within the different interbeds did not show effects from alteration caused during basalt deposition, but differed mainly by texture. Saturated hydraulic conductivities (Ksat) for the 10 core samples ranged from 10-7 to 10-4 cm/s. Low permeability layers, with Ksat values less than 10-7 cm/s, within the 35-m and 45-m interbeds may cause perched ground-water zones to form beneath the new percolation pond area, leading to the possible lateral movement of water away from the VZRP.

On the Dielectric Properties of the Martian-like Surface Sediments

NASA Technical Reports Server (NTRS)

Heggy, E.; Clifford, S. M.; Morris, R. V.; Paillou, P.; Ruffie, G.

2004-01-01

We have undertaken laboratory electromagnetic characterization of the total set of minerals identified by TES on the Martian surface in order to investigate experimentally the dielectric properties of the sediments covering it in the frequency range from 1 to 30 MHz. Volcanic Rocks with a well defined mineralogy and petrology from potential terrestrial analogues sites have also been included in the study. Our primary objective is to evaluate the range of electrical and magnetic losses that may be encountered by the various Radar sounding and imaging experiments dedicated to map the Martian subsurface searching for underground water. The electromagnetic properties of these Mars-like materials will be presented as a function of various geophysical parameters, such as porosity, bulk density and temperature. The secondary objective, is to locate regions were surface dielectric conditions are suitable for subsurface sounding.

Review on subsurface colloids and colloid-associated contaminant transport in saturated porous media.

PubMed

Kanti Sen, Tushar; Khilar, Kartic C

2006-02-28

In this review article, the authors present up-to-date developments on experimental, modeling and field studies on the role of subsurface colloidal fines on contaminant transport in saturated porous media. It is a complex phenomenon in porous media involving several basic processes such as colloidal fines release, dispersion stabilization, migration and fines entrapment/plugging at the pore constrictions and adsorption at solid/liquid interface. The effects of these basic processes on the contaminant transport have been compiled. Here the authors first present the compilation on in situ colloidal fines sources, release, stabilization of colloidal dispersion and migration which are a function of physical and chemical conditions of subsurface environment and finally their role in inorganic and organic contaminants transport in porous media. The important aspects of this article are as follows: (i) it gives not only complete compilation on colloidal fines-facilitated contaminant transport but also reviews the new role of colloidal fines in contaminant retardation due to plugging of pore constrictions. This plugging phenomenon also depends on various factors such as concentration of colloidal fines, superficial velocity and bead-to-particle size ratio. This plugging-based contaminant transport can be used to develop containment technique in soil and groundwater remediation. (ii) It also presents the importance of critical salt concentration (CSC), critical ionic strength for mixed salt, critical shear stressor critical particle concentration (CPC) on in situ colloidal fines release and migration and consequently their role on contaminant transport in porous media. (iii) It also reviews another class of colloidal fines called biocolloids and their transport in porous media. Finally, the authors highlight the future research based on their critical review on colloid-associated contaminant transport in saturated porous media.

SHUTTLE IMAGING RADAR: PHYSICAL CONTROLS ON SIGNAL PENETRATION AND SUBSURFACE SCATTERING IN THE EASTERN SAHARA.

USGS Publications Warehouse

Schaber, Gerald G.; McCauley, John F.; Breed, Carol S.; Olhoeft, Gary R.

1986-01-01

It is found that the Shuttle Imaging Radar A (SIR-A) signal penetration and subsurface backscatter within the upper meter or so of the sediment blanket in the Eastern Sahara of southern Egypt and northern Sudan are enhanced both by radar sensor parameters and by the physical and chemical characteristics of eolian and alluvial materials. The near-surface stratigraphy, the electrical properties of materials, and the types of radar interfaces found to be responsible for different classes of SIR-A tonal response are summarized. The dominant factors related to efficient microwave signal penetration into the sediment blanket include 1) favorable distribution of particle sizes, 2) extremely low moisture content and 3) reduced geometric scattering at the SIR-A frequency (1. 3 GHz). The depth of signal penetration that results in a recorded backscatter, called radar imaging depth, was documented in the field to be a maximum of 1. 5 m, or 0. 25 times the calculated skin depth, for the sediment blanket. The radar imaging depth is estimated to be between 2 and 3 m for active sand dune materials.

Application of a fully integrated surface-subsurface physically based flow model for evaluating groundwater recharge from a flash flood event

NASA Astrophysics Data System (ADS)

Pino, Cristian; Herrera, Paulo; Therrien, René

2017-04-01

In many arid regions around the world groundwater recharge occurs during flash floods. This transient spatially and temporally concentrated flood-recharge process takes place through the variably saturated zone between surface and usually the deep groundwater table. These flood events are characterized by rapid and extreme changes in surface flow depth and velocity and soil moisture conditions. Infiltration rates change over time controlled by the hydraulic gradients and the unsaturated hydraulic conductivity at the surface-subsurface interface. Today is a challenge to assess the spatial and temporal distribution of groundwater recharge from flash flood events under real field conditions at different scales in arid areas. We apply an integrated surface-subsurface variably saturated physically-based flow model at the watershed scale to assess the recharge process during and after a flash flood event registered in an arid fluvial valley in Northern Chile. We are able to reproduce reasonably well observed groundwater levels and surface flow discharges during and after the flood with a calibrated model. We also investigate the magnitude and spatio-temporal distribution of recharge and the response of the system to variations of different surface and subsurface parameters, initial soil moisture content and groundwater table depths and surface flow conditions. We demonstrate how an integrated physically based model allows the exploration of different spatial and temporal system states, and that the analysis of the results of the simulations help us to improve our understanding of the recharge processes in similar type of systems that are common to many arid areas around the world.

Surface particle sizes on armoured gravel streambeds: Effects of supply and hydraulics

Treesearch

Peter J. Whiting; John G. King

2003-01-01

Most gravel-bed streams exhibit a surface armour in which the median grain size of the surface particles is coarser than that of the subsurface particles. This armour has been interpreted to result when the supply of sediment is less than the ability of the stream to move sediment. While there may be certain sizes in the bed for which the supply is less than the...

Mesozoic (Lower Jurassic) red stromatactis limestones from the Southern Alps (Arzo, Switzerland): calcite mineral authigenesis and syneresis-type deformation

NASA Astrophysics Data System (ADS)

Neuweiler, Fritz; Bernoulli, Daniel

2005-02-01

The Broccatello lithological unit (Lower Jurassic, Hettangian to lower parts of Upper Sinemurian) near the village of Arzo (southern Alps, southern Switzerland) is a mound-shaped carbonate deposit that contains patches of red stromatactis limestone. Within the largely bioclastic Broccatello unit, the stromatactis limestone is distinguished by its early-diagenetic cavity system, a relatively fine-grained texture, and an in-situ assemblage of calcified siliceous sponges (various demosponges and hexactinellids). A complex shallow subsurface diagenetic pathway can be reconstructed from sediment petrography in combination with comparative geochemical analysis (carbon and oxygen isotopes; trace and rare earth elements, REE + Y). This pathway includes organic matter transformation, aragonite and skeletal opal dissolution, patchy calcification and lithification, sediment shrinkage, sagging and collapse, partial REE remobilization, and multiple sediment infiltration. These processes occurred under normal-marine, essentially oxic conditions and were independent from local, recurring syn-sedimentary faulting. It is concluded that the stromatactis results from a combination of calcite mineral authigenesis and syneresis-type deformation. The natural stromatactis phenomenon may thus be best explained by maturation processes of particulate polymer gels expected to form in fine-grained carbonate sediments in the shallow subsurface. Conditions favorable for the evolution of stromatactis appear to be particularly frequent during drowning of tropical or subtropical carbonate platforms.

Radioiodine sorption/desorption and speciation transformation by subsurface sediments from the Hanford Site.

PubMed

Xu, Chen; Kaplan, Daniel I; Zhang, Saijin; Athon, Matthew; Ho, Yi-Fang; Li, Hsiu-Ping; Yeager, Chris M; Schwehr, Kathleen A; Grandbois, Russell; Wellman, Dawn; Santschi, Peter H

2015-01-01

During the last few decades, considerable research efforts have been extended to identify more effective remediation treatment technologies to lower the (129)I concentrations to below federal drinking water standards at the Hanford Site (Richland, USA). Few studies have taken iodate into consideration, though recently iodate, instead of iodide, was identified as the major species in the groundwater of 200-West Area within the Hanford Site. The objective of this study was thus to quantify and understand aqueous radioiodine species transformations and uptake by three sediments collected from the semi-arid, carbonate-rich environment of the Hanford subsurface. All three sediments reduced iodate (IO3(-)) to iodide (I(-)), but the loamy-sand sediment reduced more IO3(-) (100% reduced within 7 days) than the two sand-textured sediments (∼20% reduced after 28 days). No dissolved organo-iodine species were observed in any of these studies. Iodate uptake Kd values ([Isolid]/[Iaq]; 0.8-7.6 L/kg) were consistently and appreciably greater than iodide Kd values (0-5.6 L/kg). Furthermore, desorption Kd values (11.9-29.8 L/kg) for both iodate and iodide were consistently and appreciably greater than uptake Kd values (0-7.6 L/kg). Major fractions of iodine associated with the sediments were unexpectedly strongly bound, such that only 0.4-6.6 % of the total sedimentary iodine could be exchanged from the surface with KCl solution, and 0-1.2% was associated with Fe or Mn oxides (weak NH2HCl/HNO3 extractable fraction). Iodine incorporated into calcite accounted for 2.9-39.4% of the total sedimentary iodine, whereas organic carbon (OC) is likely responsible for the residual iodine (57.1-90.6%) in sediments. The OC, even at low concentrations, appeared to be controlling iodine binding to the sediments, as it was found that the greater the OC concentrations in the sediments, the greater the values of uptake Kd, desorption Kd, and the greater residual iodine concentrations (non-exchangeable, non-calcite-incorporated and non-Mn, Fe-oxide associated). This finding is of particular interest because it suggests that even very low OC concentrations, <0.2%, may have an impact on iodine geochemistry. The findings that these sediments can readily reduce IO3(-), and that IO3(-) sorbs to a greater extent than I(-), sheds light into earlier unexplained Hanford field data that demonstrated increases in groundwater (127)I(-)/(127)IO3(-) ratios and a decrease groundwater (129)IO3(-) concentrations along a transect away from the point sources, where iodine was primarily introduced as IO3(-). While a majority of the radioiodine does not bind to these alkaline sediments, there is likely a second smaller iodine fraction in the Hanford subsurface that is strongly bound, presumably to the sediment OC (and carbonate) phases. This second fraction may have an impact on establishing remediation goals and performance assessment calculations. Copyright © 2014 Elsevier Ltd. All rights reserved.

Paleokarst processes in the Eocene limestones of the Pyramids Plateau, Giza, Egypt

NASA Astrophysics Data System (ADS)

El Aref, M. M.; Refai, E.

The Eocene limestones of the Pyramids plateau are characterized by landforms of stepped terraced escarpment and karst ridges with isolated hills. The carbonate country rocks are also dominated by minor surface, surface to subsurface and subsurface solution features associated with karst products. The systematic field observations eludicate the denudation trend of the minor solution features and suggest the origin of the regional landscapes. The lithologic and structural characters of the limestone country rocks comprise the main factors controlling the surface and subsurface karst evolution. The development of the karst features and the associated sediments in the study area provides information on the paleohydrolic, chemical and climatic environments involved in the origin of the karstification.

CONTAMINANT TRANSPORT RESULTING FROM MULTICOMPONENT NONAQUEOUS PHASE LIQUID POOL DISSOLUTION IN THREE-DIMENSIONAL SUBSURFACE FORMATIONS (R823579)

EPA Science Inventory

A semi-analytical method for simulating transient contaminant transport originating from the dissolution of multicomponent nonaqueous phase liquid (NAPL) pools in three-dimensional, saturated, homogeneous porous media is presented. Each dissolved component may undergo first-order...

Quantification of Microbial Communities in Subsurface Marine Sediments of the Black Sea and off Namibia.

PubMed

Schippers, Axel; Kock, Dagmar; Höft, Carmen; Köweker, Gerrit; Siegert, Michael

2012-01-01

Organic-rich subsurface marine sediments were taken by gravity coring up to a depth of 10 m below seafloor at six stations from the anoxic Black Sea and the Benguela upwelling system off Namibia during the research cruises Meteor 72-5 and 76-1, respectively. The quantitative microbial community composition at various sediment depths was analyzed using total cell counting, catalyzed reporter deposition - fluorescence in situ hybridization (CARD-FISH) and quantitative real-time PCR (Q-PCR). Total cell counts decreased with depths from 10(9) to 10(10) cells/mL at the sediment surface to 10(7)-10(9) cells/mL below one meter depth. Based on CARD-FISH and Q-PCR analyses overall similar proportions of Bacteria and Archaea were found. The down-core distribution of prokaryotic and eukaryotic small subunit ribosomal RNA genes (16S and 18S rRNA) as well as functional genes involved in different biogeochemical processes was quantified using Q-PCR. Crenarchaeota and the bacterial candidate division JS-1 as well as the classes Anaerolineae and Caldilineae of the phylum Chloroflexi were highly abundant. Less abundant but detectable in most of the samples were Eukarya as well as the metal and sulfate-reducing Geobacteraceae (only in the Benguela upwelling influenced sediments). The functional genes cbbL, encoding for the large subunit of RuBisCO, the genes dsrA and aprA, indicative of sulfate-reducers as well as the mcrA gene of methanogens were detected in the Benguela upwelling and Black Sea sediments. Overall, the high organic carbon content of the sediments goes along with high cell counts and high gene copy numbers, as well as an equal abundance of Bacteria and Archaea.

Water saturation effects on P-wave anisotropy in synthetic sandstone with aligned fractures

NASA Astrophysics Data System (ADS)

Amalokwu, Kelvin; Chapman, Mark; Best, Angus I.; Minshull, Timothy A.; Li, Xiang-Yang

2015-08-01

The seismic properties of rocks are known to be sensitive to partial liquid or gas saturation, and to aligned fractures. P-wave anisotropy is widely used for fracture characterization and is known to be sensitive to the saturating fluid. However, studies combining the effect of multiphase saturation and aligned fractures are limited even though such conditions are common in the subsurface. An understanding of the effects of partial liquid or gas saturation on P-wave anisotropy could help improve seismic characterization of fractured, gas bearing reservoirs. Using octagonal-shaped synthetic sandstone samples, one containing aligned penny-shaped fractures and the other without fractures, we examined the influence of water saturation on P-wave anisotropy in fractured rocks. In the fractured rock, the saturation related stiffening effect at higher water saturation values is larger in the direction across the fractures than along the fractures. Consequently, the anisotropy parameter `ε' decreases as a result of this fluid stiffening effect. These effects are frequency dependent as a result of wave-induced fluid flow mechanisms. Our observations can be explained by combining a frequency-dependent fractured rock model and a frequency-dependent partial saturation model.

A new model of equilibrium subsurface hydration on Mars

NASA Astrophysics Data System (ADS)

Hecht, M. H.

2011-12-01

One of the surprises of the Odyssey mission was the discovery by the Gamma Ray Spectrometer (GRS) suite of large concentrations of water-equivalent hydrogen (WEH) in the shallow subsurface at low latitudes, consistent with 5-7% regolith water content by weight (Mitrofanov et al. Science 297, p. 78, 2002; Feldman et al. Science 297, p. 75, 2002). Water at low latitudes on Mars is generally believed to be sequestered in the form of hydrated minerals. Numerous attempts have been made to relate the global map of WEH to specific mineralogy. For example Feldman et al. (Geophys. Res. Lett., 31, L16702, 2004) associated an estimated 10% sulfate content of the soil with epsomite (51% water), hexahydrite (46% water) and kieserite (13% water). In such studies, stability maps have been created by assuming equilibration of the subsurface water vapor density with a global mean annual column mass vapor density. Here it is argued that this value significantly understates the subsurface humidity. Results from the Phoenix mission are used to suggest that the midday vapor pressure measured just above the surface is a better proxy for the saturation vapor pressure of subsurface hydrous minerals. The measured frostpoint at the Phoenix site was found to be equal to the surface temperature by night and the modeled temperature at the top of the ice table by day (Zent et al. J. Geophys. Res., 115, E00E14, 2010). It was proposed by Hecht (41st LPSC abstract #1533, 2010) that this phenomenon results from water vapor trapping at the coldest nearby surface. At night, the surface is colder than the surface of the ice table; by day it is warmer. Thus, at night, the subsurface is bounded by a fully saturated layer of cold water frost or adsorbed water at the surface, not by the dry boundary layer itself. This argument is not strongly dependent on the particular saturation vapor pressure (SVP) of ice or other subsurface material, only on the thickness of the dry layer. Specifically, the diurnal thermal skin depth d = √(α τ) ~ 4cm, where α = k/(ρ*c) is the thermal diffusivity, τ is the period of oscillation, and α has been taken to be 0.00018 cm2/s. Since the sampling depth of GRS is >>4cm, midday humidity should provide a good guide to the SVP of material sampled by GRS. It is also suggested that regional differences in soil/rock ratios are the most likely source of the observed regional variation in WEH. This premise is consistent with the observation of Keller et al. (J. Geophys. Res., 111, E03S08, 2006) that the global GRS Cl map correlates with WEH and anti-correlates with both Si and thermal inertia. This research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with NASA

Regional biostratigraphy and paleoenvironmental history of Miocene of onshore and offshore Alabama

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, C.C.

1989-09-01

Subsurface Miocene sediments of coastal Alabama and the adjoining state and federal waters consist of a clastic wedge varying in thickness from less than 1,000 ft in southern Alabama to a maximum of about 6,000 ft in the northeastern portion of the Main Pass area. Relatively deep-water and open-marine transgressive basal Miocene clays and shales unconformably overlie a gently southwestward-dipping late Oligocene-earliest Miocene carbonate platform. Middle and late Miocene sediments consist of a regressive offlapping sequence of sand and shale deposited in varying neritic paleoenvironments. Analysis of planktonic and benthonic foraminifera has resulted in a refined biostratigraphic zonation of thesemore » sediments, permitting the recognition of several regional time-equivalent datum levels, or biohorizons. These biohorizons are shown on a series of subsurface cross sections that show the dramatic southwestward thickening of middle and late Miocene sediments as well as illustrate the relationships of the producing intervals within the Cibicides carstensi and Discorbis 12 interval zones. The paleoenvironmental history of the Miocene has been reconstructed on a series of paleobathymetric maps drawn for selected regional biohorizons. Among other features, these maps have proven the existence and outlined the margins of previously unrecognized shallow-meritic deltaic sediments in southeastern Mobile County and in the Chandeleur and Viosca Knoll (north) areas. Analysis of sedimentation rates, which range from less than 25 to 1,370 ft/m.y., further aids in understanding the coastal shelf, deltaic, and open-marine depositional history of the Miocene of Alabama and the adjoining state and federal waters.« less

KEEPING DUST UNDER THE CARPET

EPA Science Inventory

The paper gives results of a study of civil engineering fabrics applied to fugitive dust problems. The fabrics, commonly used for ground stabilization, subsurface drainage, railroad construction and maintenance, sediment control, and erosion control, are available from Celanese, ...

Enhanced stability of steep channel beds to mass failure and debris flow initiation

NASA Astrophysics Data System (ADS)

Prancevic, J.; Lamb, M. P.; Ayoub, F.; Venditti, J. G.

2015-12-01

Debris flows dominate bedrock erosion and sediment transport in very steep mountain channels, and are often initiated from failure of channel-bed alluvium during storms. While several theoretical models exist to predict mass failures, few have been tested because observations of in-channel bed failures are extremely limited. To fill this gap in our understanding, we performed laboratory flume experiments to identify the conditions necessary to initiate bed failures in non-cohesive sediment of different sizes (D = 0.7 mm to 15 mm) on steep channel-bed slopes (S = 0.45 to 0.93) and in the presence of water flow. In beds composed of sand, failures occurred under sub-saturated conditions on steep bed slopes (S > 0.5) and under super-saturated conditions at lower slopes. In beds of gravel, however, failures occurred only under super-saturated conditions at all tested slopes, even those approaching the dry angle of repose. Consistent with theoretical models, mass failures under super-saturated conditions initiated along a failure plane approximately one grain-diameter below the bed surface, whereas the failure plane was located near the base of the bed under sub-saturated conditions. However, all experimental beds were more stable than predicted by 1-D infinite-slope stability models. In partially saturated sand, enhanced stability appears to result from suction stress. Enhanced stability in gravel may result from turbulent energy losses in pores or increased granular friction for failures that are shallow with respect to grain size. These grain-size dependent effects are not currently included in stability models for non-cohesive sediment, and they may help to explain better the timing and location of debris flow occurrence.

Geophysical Monitoring of Coupled Microbial and Geochemical Processes During Stimulated Subsurface Bioremediation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Williams, Kenneth H.; Kemna, Andreas; Wilkins, Michael J.

2009-08-05

Understanding how microorganisms alter their physical and chemical environment during bioremediation is hindered by our inability to resolve subsurface microbial activity with high spatial resolution. Here we demonstrate the use of a minimally invasive geophysical technique to monitor stimulated microbial activity during acetate amendment in an aquifer near Rifle, Colorado. During electrical induced polarization (IP) measurements, spatiotemporal variations in the phase response between imposed electric current and the resultant electric field correlated with changes in groundwater geochemistry accompanying stimulated iron and sulfate reduction and sulfide mineral precipitation. The magnitude of the phase response varied with measurement frequency (0.125 and 1more » Hz) andwasdependent upon the dominant metabolic process. The spectral effect was corroborated using a biostimulated column experiment containing Rifle sediments and groundwater. Fluids and sediments recovered from regions exhibiting an anomalous phase response were enriched in Fe(II), dissolved sulfide, and cell-associated FeS nanoparticles. The accumulation of mineral precipitates and electroactive ions altered the ability of pore fluids to conduct electrical charge, accounting for the anomalous IP response and revealing the usefulness of multifrequency IP measurements for monitoring mineralogical and geochemical changes accompanying stimulated subsurface bioremediation.« less

Mechanical and electromagnetic properties of northern Gulf of Mexico sediments with and without THF hydrates

USGS Publications Warehouse

Lee, J.Y.; Santamarina, J.C.; Ruppel, C.

2008-01-01

Using an oedometer cell instrumented to measure the evolution of electromagnetic properties, small strain stiffness, and temperature, we conducted consolidation tests on sediments recovered during drilling in the northern Gulf of Mexico at the Atwater Valley and Keathley Canyon sites as part of the 2005 Chevron Joint Industry Project on Methane Hydrates. The tested specimens include both unremolded specimens (as recovered from the original core liner) and remolded sediments both without gas hydrate and with pore fluid exchanged to attain 100% synthetic (tetrahydrofuran) hydrate saturation at any stage of loading. Test results demonstrate the extent to which the electromagnetic and mechanical properties of hydrate-bearing marine sediments are governed by the vertical effective stress, stress history, porosity, hydrate saturation, fabric, ionic concentration of the pore fluid, and temperature. We also show how permittivity and electrical conductivity data can be used to estimate the evolution of hydrate volume fraction during formation. The gradual evolution of geophysical properties during hydrate formation probably reflects the slow increase in ionic concentration in the pore fluid due to ion exclusion in closed systems and the gradual decrease in average pore size in which the hydrate forms. During hydrate formation, the increase in S-wave velocity is delayed with respect to the decrease in permittivity, consistent with hydrate formation on mineral surfaces and subsequent crystal growth toward the pore space. No significant decementation/debonding occurred in 100% THF hydrate-saturated sediments during unloading, hence the probability of sampling hydrate-bearing sediments without disturbing the original sediment fabric is greatest for samples in which the gas hydrate is primarily responsible for maintaining the sediment fabric and for which the time between core retrieval and restoration of in situ effective stress in the laboratory is minimized. In evaluating the impact of core retrieval on specimen properties, it is also important to consider how far removed hydrate-bearing samples are from hydrate stability conditions. ?? 2008 Elsevier Ltd.

Subsurface North Atlantic warming as a trigger of rapid cooling events: evidence from the early Pleistocene (MIS 31-19)

NASA Astrophysics Data System (ADS)

Hernández-Almeida, I.; Sierro, F.-J.; Cacho, I.; Flores, J.-A.

2015-04-01

Subsurface water column dynamics in the subpolar North Atlantic were reconstructed in order to improve the understanding of the cause of abrupt ice-rafted detritus (IRD) events during cold periods of the early Pleistocene. We used paired Mg / Ca and δ18O measurements of Neogloboquadrina pachyderma (sinistral - sin.), deep-dwelling planktonic foraminifera, to estimate the subsurface temperatures and seawater δ18O from a sediment core from Gardar Drift, in the subpolar North Atlantic. Carbon isotopes of benthic and planktonic foraminifera from the same site provide information about the ventilation and water column nutrient gradient. Mg / Ca-based temperatures and seawater δ18O suggest increased subsurface temperatures and salinities during ice-rafting, likely due to northward subsurface transport of subtropical waters during periods of weaker Atlantic Meridional Overturning Circulation (AMOC). Planktonic carbon isotopes support this suggestion, showing coincident increased subsurface ventilation during deposition of IRD. Subsurface accumulation of warm waters would have resulted in basal warming and break-up of ice-shelves, leading to massive iceberg discharges in the North Atlantic. The release of heat stored at the subsurface to the atmosphere would have helped to restart the AMOC. This mechanism is in agreement with modelling and proxy studies that observe a subsurface warming in the North Atlantic in response to AMOC slowdown during Marine Isotope Stage (MIS) 3.

Methane gas hydrate effect on sediment acoustic and strength properties

USGS Publications Warehouse

Winters, W.J.; Waite, W.F.; Mason, D.H.; Gilbert, L.Y.; Pecher, I.A.

2007-01-01

To improve our understanding of the interaction of methane gas hydrate with host sediment, we studied: (1) the effects of gas hydrate and ice on acoustic velocity in different sediment types, (2) effect of different hydrate formation mechanisms on measured acoustic properties (3) dependence of shear strength on pore space contents, and (4) pore pressure effects during undrained shear.A wide range in acoustic p-wave velocities (Vp) were measured in coarse-grained sediment for different pore space occupants. Vp ranged from less than 1 km/s for gas-charged sediment to 1.77–1.94 km/s for water-saturated sediment, 2.91–4.00 km/s for sediment with varying degrees of hydrate saturation, and 3.88–4.33 km/s for frozen sediment. Vp measured in fine-grained sediment containing gas hydrate was substantially lower (1.97 km/s). Acoustic models based on measured Vp indicate that hydrate which formed in high gas flux environments can cement coarse-grained sediment, whereas hydrate formed from methane dissolved in the pore fluid may not.The presence of gas hydrate and other solid pore-filling material, such as ice, increased the sediment shear strength. The magnitude of that increase is related to the amount of hydrate in the pore space and cementation characteristics between the hydrate and sediment grains. We have found, that for consolidation stresses associated with the upper several hundred meters of sub-bottom depth, pore pressures decreased during shear in coarse-grained sediment containing gas hydrate, whereas pore pressure in fine-grained sediment typically increased during shear. The presence of free gas in pore spaces damped pore pressure response during shear and reduced the strengthening effect of gas hydrate in sands.

A locally conservative stabilized continuous Galerkin finite element method for two-phase flow in poroelastic subsurfaces

NASA Astrophysics Data System (ADS)

Deng, Q.; Ginting, V.; McCaskill, B.; Torsu, P.

2017-10-01

We study the application of a stabilized continuous Galerkin finite element method (CGFEM) in the simulation of multiphase flow in poroelastic subsurfaces. The system involves a nonlinear coupling between the fluid pressure, subsurface's deformation, and the fluid phase saturation, and as such, we represent this coupling through an iterative procedure. Spatial discretization of the poroelastic system employs the standard linear finite element in combination with a numerical diffusion term to maintain stability of the algebraic system. Furthermore, direct calculation of the normal velocities from pressure and deformation does not entail a locally conservative field. To alleviate this drawback, we propose an element based post-processing technique through which local conservation can be established. The performance of the method is validated through several examples illustrating the convergence of the method, the effectivity of the stabilization term, and the ability to achieve locally conservative normal velocities. Finally, the efficacy of the method is demonstrated through simulations of realistic multiphase flow in poroelastic subsurfaces.

Using electrokinetic phenomena and electrical resistance tomography to characterize the movement of subsurface fluids

DOEpatents

Ramirez, Abelardo L.; Cooper, John F.; Daily, William D.

1996-01-01

This invention relates generally to the remote detections of subsurface liquid contaminants using in combination a geophysical technique known as ERT and an EKS. Electrokinetic transport is used to enhance the ability of electrical resistance tomography (ERT) to detect position and movement of subsurface contaminant liquids, particles or ions. ERT images alone are difficult to interpret because of natural inhomogeneities in soil composition and electrical properties. By subtracting two or more ERT images obtained before and after field induced movement, a high contrast image of a plume of distinct electrokinetic properties can be seen. The invention is applicable to important subsurface characterization problems including, as examples, (1) detection of liquid-saturated plumes of contaminants such as those associated with leaks from underground storage tanks containing hazardous concentrated electrolytes, (2) detection and characterization of soils contaminated with organic pollutants such as droplets of gasoline; and (3) monitoring the progress of electrokinetic containment or clean up of underground contamination.

Using electrokinetic phenomena and electrical resistance tomography to characterize the movement of subsurface fluids

DOEpatents

Ramirez, A.L.; Cooper, J.F.; Daily, W.D.

1996-02-27

This invention relates generally to the remote detections of subsurface liquid contaminants using in combination a geophysical technique known as ERT and an EKS. Electrokinetic transport is used to enhance the ability of electrical resistance tomography (ERT) to detect position and movement of subsurface contaminant liquids, particles or ions. ERT images alone are difficult to interpret because of natural inhomogeneities in soil composition and electrical properties. By subtracting two or more ERT images obtained before and after field induced movement, a high contrast image of a plume of distinct electrokinetic properties can be seen. The invention is applicable to important subsurface characterization problems including, as examples, (1) detection of liquid-saturated plumes of contaminants such as those associated with leaks from underground storage tanks containing hazardous concentrated electrolytes, (2) detection and characterization of soils contaminated with organic pollutants such as droplets of gasoline; and (3) monitoring the progress of electrokinetic containment or clean up of underground contamination. 1 fig.

Stable Carbon Isotope Composition of Remineralizing Organic Matter in the Northern Gulf of Mexico Continental Shelf

NASA Astrophysics Data System (ADS)

Hu, X.; Wang, H.; Rabalais, N. N.

2016-02-01

Despite years of study, whether water column or benthic respiration controls oxygen consumption in the seasonally hypoxic Northern Gulf of Mexico (nGOM) waters remains contentious. Elucidating this control is essential for long-term nutrient management purposes. In this study, we examined stable carbon isotope composition (δ13C) of organic matter that was remineralized in subsurface water of the nGOM continental shelf using both shipboard incubations (water and sediment) and a three-endmember mixing model. Based on our 2014 data, sediment and water incubations yielded disparate δ13C signatures in the respiration produced CO2, with the sediment incubation generating substantially more 13C-enriched CO2 (-16 -21‰ in sediment vs. -27 -29‰ in water), though water column bulk particulate organic matter (POM) had δ13C ranging from -23‰ to -25‰. However, from the three-endmember mixing model, our calculated CO2-δ13C due to respiration in the entire surveyed nGOM shelf was -18.5‰. This value was consistent with the results obtained in previous annual shelfwide cruises (-17.2 -19.5‰). The close agreement between respirational CO2-δ13C from the mixing model and that from sediment incubation suggests that benthic process likely played a dominant role in subsurface respiration in the nGOM shelf. This result also indicates that hydrocarbon remineralization was likely insignificant on the ecosystem level after the 2010 Deepwater Horizon oil spill.

Geochemical Processes During Managed Aquifer Recharge With Desalinated Seawater

NASA Astrophysics Data System (ADS)

Ganot, Y.; Holtzman, R.; Weisbrod, N.; Russak, A.; Katz, Y.; Kurtzman, D.

2018-02-01

We study geochemical processes along the variably-saturated zone during managed aquifer recharge (MAR) with reverse-osmosis desalinated seawater (DSW). The DSW, post-treated at the desalination plant by calcite dissolution (remineralization) to meet the Israeli water quality standards, is recharged into the Israeli Coastal Aquifer through an infiltration pond. Water quality monitoring during two MAR events using suction cups and wells inside the pond indicates that cation exchange is the dominant subsurface reaction, driven by the high Ca2+ concentration in the post-treated DSW. Stable isotope analysis shows that the shallow groundwater composition is similar to the recharged DSW, except for enrichment of Mg2+, Na+, Ca2+, and HCO3-. A calibrated variably-saturated reactive transport model is used to predict the geochemical evolution during 50 years of MAR for two water quality scenarios: (i) post-treated DSW (current practice) and (ii) soft DSW (lacking the remineralization post-treatment process). The latter scenario was aimed to test soil-aquifer-treatment (SAT) as an alternative post-treatment technique. Both scenarios provide an enrichment of ˜2.5 mg L-1 in Mg2+ due to cation exchange, compared to practically zero Mg2+ currently found in the Israeli DSW. Simulations of the alternative SAT scenario provide Ca2+ and HCO3- remineralization due to calcite dissolution at levels that meet the Israeli standard for DSW. The simulated calcite content reduction in the sediments below the infiltration pond after 50 years of MAR was low (<1%). Our findings suggest that remineralization using SAT for DSW is a potentially sustainable practice at MAR sites overlying calcareous sandy aquifers.

Water-level altitudes 2012 and water-level changes in the Chicot, Evangeline, and Jasper aquifers and compaction 1973-2011 in the Chicot and Evangeline aquifers, Houston-Galveston region, Texas

USGS Publications Warehouse

Kasmarek, Mark C.; Johnson, Michaela R.; Ramage, Jason K.

2012-01-01

Compaction of subsurface sediments (mostly in the clay layers) composing the Chicot and Evangeline aquifers was recorded continuously at 13 borehole extensometers at 11 sites. For the period of record beginning in 1973 (or later) and ending in December 2011, cumulative compaction data collected from the 13 extensometers ranged from 0.102 ft at the Texas City–Moses Lake site to 3.621 ft at the Addicks site. The rate of compaction varies from site to site because of differences in groundwater withdrawals near each site and differences among sites in the clay-to-sand ratio in the subsurface sediments. Therefore, it is not possible to extrapolate or infer a rate of compaction for adjacent areas on the basis of the rate of compaction measured at a nearby extensometer.

Establishing a Geologic Baseline Of Cape Canaveral's Natural Landscape: Black Point Drive

NASA Technical Reports Server (NTRS)

Parkinson, Randall W.

2001-01-01

The goal of this project is to identify the process responsible for the formation of geomorphic features in the Black Point Drive area of Merritt Island National Wildlife Refuge/Kennedy Space Center (MINWR/KSC), northwest Cape Canaveral. This study confirms the principal landscape components (geomorphology) of Black Point Drive reflect interaction between surficial sediments deposited in association with late-Quaternary sea-level highstands and the chemical evolution of late-Cenozoic subsurface limestone formations. The Black Point Drive landscape consists of an undulatory mesic terrain which dips westward into myriad circular and channel-like depression marshes and lakes. This geomorphic gradient may reflect: (1) spatial distinctions in the elevation, character or age of buried (pre-Miocene) limestone formations, (2) dissolution history of late-Quaternary coquina and/or (3) thickness of unconsolidated surface sediment. More detailed evaluation of subsurface data will be necessary before this uncertainty can be resolved.

Establishing A Geologic Baseline of Cape Canaveral''s Natural Landscape: Black Point Drive

NASA Technical Reports Server (NTRS)

Parkinson, Randall W.

2002-01-01

The goal of this project is to identify the process responsible for the formation of geomorphic features in the Black Point Drive area of Merritt Island National Wildlife Refuge/Kennedy Space Center (MINWR/KSC), northwest Cape Canaveral. This study confirms the principal landscape components (geomorphology) of Black Point Drive reflect interaction between surficial sediments deposited in association with late-Quaternary sea-level highstands and the chemical evolution of late-Cenozoic sub-surface limestone formations. The Black Point Drive landscape consists of an undulatory mesic terrain which dips westward into myriad circular and channel-like depression marshes and lakes. This geomorphic gradient may reflect: (1) spatial distinctions in the elevation, character or age of buried (pre-Miocene) limestone formations, (2) dissolution history of late-Quaternary coquina and/or (3) thickness of unconsolidated surface sediment. More detailed evaluation of subsurface data will be necessary before this uncertain0 can be resolved.

Migration of carbon dioxide included micro-nano bubble water in porous media and its monitoring

NASA Astrophysics Data System (ADS)

Takemura, T.; Hamamoto, S.; Suzuki, K.; Koichi, O.

2017-12-01

The distributed CO2 storage is the small scale storage and its located near the emission areas. In the distributed CO2 storage, the CO2 is neutralized by sediment and underground water in the subsurface region (300-500m depth). Carbon dioxide (CO2) included micro-nano bubbles is one approach in neutralizing CO2 and sediments by increasing CO2 volume per unit volume of water and accelerating the chemical reaction. In order to design underground treatment for CO2 gas in the subsurface, it is required to elucidate the behavior of CO2 included micro-nano bubbles in the water. In this study, we carried out laboratory experiment using the soil tank, and measure the amount of leakage of CO2 gas at the surface. In addition, the process of migration of carbon dioxide included micro-nano bubble was monitored by the nondestructive method, wave velocity and resistivity.

Sedimentary silicon isotope indicates the Kuroshio subsurface upwelling in the East China Sea

NASA Astrophysics Data System (ADS)

Zhao, Y.; Yang, S.; Su, N.

2017-12-01

The Kuroshio as the western boundary current of the North Pacific subtropical circulation, originates from east of the Philippine Islands, and flows northeastward along the eastern coast of Taiwan. It's subsurface water intrudes the East China Sea (ECS) and forms a typical upwelling on the inner shelf, which may play an important role in the material and heat transport, biogeochemical process and marine ecosystem of the ECS.To date, most previous studies on the Kuroshio subsurface upwelling focuse on the seasonal and interannual variations, and few researches touch on the upwelling evolution in the geologic past. In this study, eight short sediment cores were taken along the ECS inner shelf (upwelling area), which allow us to reconstruct the upwelling history over the last several hundred years. Although conventional indexes of oceanographic changes, such as salinity, temperature and hydrogen and oxygen isotope, provide valuable constraints on the modern oceanic circulation and water mass movements, how to reconstruct them from geologic records is always a challenging work. In this contribution, we present the data of stable silicon isotope, biogenic opal, diatom assemblages, element geochemistry and stable carbon and nitrogen isotopes of these core sediments, and aim to decipher the Kuroshio subsurface upwelling history on the ECS shelf. We will also illustrate the difference in δ30Si signals between small (<30 um) and large (>150 um) diatom fractions, and test whether it is an effective indicator for paleo-upwelling intensity.

Characterization of Natural Organic Matter in Alluvial Aquifer Sediments: Approaches and Implications for Reactivity

NASA Astrophysics Data System (ADS)

Fox, P. M.; Nico, P. S.; Hao, Z.; Gilbert, B.; Tfaily, M. M.; Devadoss, J.

2015-12-01

Sediment-associated natural organic matter (NOM) is an extremely complex assemblage of organic molecules with a wide range of sizes, functional groups, and structures, which is intricately associated with mineral particles. The chemical nature of NOM may control its' reactivity towards metals, minerals, enzymes, and bacteria. Organic carbon concentrations in subsurface sediments are typically much lower than in surface soils, posing a distinct challenge for characterization. In this study, we investigated NOM associated with shallow alluvial aquifer sediments in a floodplain of the Colorado River. Total organic carbon (TOC) contents in these subsurface sediments are typically around 0.1%, but can range from 0.03% up to approximately 1.5%. Even at the typical TOC values of 0.1%, the mass of sediment-associated OC is approximately 5000 times higher than the mass of dissolved OC, representing a large pool of carbon that may potentially be mobilized or degraded under changing environmental conditions. Sediment-associated OC is much older than both the depositional age of the alluvial sediments and dissolved OC in the groundwater, indicating that the vast majority of NOM was sequestered by the sediment long before it was deposited in the floodplain. We have characterized the sediment-bound NOM from two locations within the floodplain with differing physical and geochemical properties. One location has relatively low organic carbon (<0.2%) and is considered suboxic [dissolved oxygen is low or absent, but no dissolved Fe(II) observed], while the other is a naturally reducing zone with higher organic carbon (0.2-1.5%) and Fe(II)-reducing conditions. An extraction scheme was developed using a combination of sequential extraction [water and sodium pyrophosphate (pH 10)] and purification in order to isolate different fractions of sediment-associated NOM. Analysis of these different NOM fractions was then carried out by FTIR and ESI-FTICR-MS to allow for comparison of NOM structure and composition both across sites and across fractions for a single location. Using this combination of analytical techniques we can probe the variation in NOM chemical composition and mineral association across different biogeochemical regimes and assess the potential reactivity of various NOM pools.

Spatio-temporal patterns of groundwater depths and soil nutrients in a small watershed in the Ethiopian highlands: Topographic and land-use controls

NASA Astrophysics Data System (ADS)

Guzman, Christian D.; Tilahun, Seifu A.; Dagnew, Dessalegn C.; Zimale, Fasikaw A.; Zegeye, Assefa D.; Boll, Jan; Parlange, Jean-Yves; Steenhuis, Tammo S.

2017-12-01

Soil and water conservation structures, promoted by local and international development organizations throughout rural landscapes, aim to increase recharge and prevent degradation of soil surface characteristics. This study investigates this unexamined relationship between recharge, water table depths, and soil surface characteristics (nutrients) in a small sub-watershed in the northwestern Ethiopian highlands. These highland watersheds have high infiltration rates (mean 70 mm hr-1, median 33 mm hr-1), recharging the shallow unconfined hillslope aquifer with water transport occurring via subsurface pathways down the slope. The perched water tables reflect the subsurface flux and are deep where this flux is rapid in the upland areas (138 cm below surface). Soil saturation and overland flow occur when the subsurface flux exceeds the transport capacity of the soil in the lower downslope areas near the ephemeral stream (19 cm below surface). Land use is directly related to the water table depth, corresponding to grazing and fallowed (saturated) land in the downslope areas and cultivated (unsaturated) land in the middle and upper parts where the water table is deeper. Kjeldahl Total Nitrogen (TN), Bray II available phosphorus (AP), and exchangeable potassium (K+) averages exhibit different behaviors across slope, land use transects, or saturation conditions. TN was moderate to low (0.07% ± 0.04) in various land uses and slope regions. Bray II AP had very low concentrations (0.25 mg kg-1 ± 0.26) among the different slope regions with no significant differences throughout (p > .05). The exchangeable cation (K+, Ca2+, Mg2+) concentrations and pH, however, were greater in non-cultivated (seasonally saturated) lands and in a downslope direction (p < .001, p < .005, p < .05, and p < .005, respectively). These results show that the perched groundwater plays an important role in influencing land use, the amount of water seasonally available for crop growth, and exchangeable cations, but have no clear effect on the concentration of the two primarily applied nutrients in fertilizers (N, P).

Acidification of subsurface coastal waters enhanced by eutrophication

EPA Science Inventory

Uptake of fossil-fuel carbon dioxide (CO2) from the atmosphere has acidified the surface ocean by ~0.1 pH units and driven down the carbonate saturation state. Ocean acidification is a threat to marine ecosystems and may alter key biogeochemical cycles. Coastal oceans have also b...

Release of quantum dot nanoparticles in porous media: Role of cation exchange and aging time

USDA-ARS?s Scientific Manuscript database

Understanding the fate and transport of engineered nanoparticles (ENPs) in subsurface environments is required for developing the best strategy for waste management and disposal of these materials. In this study, the deposition and release of quantum dot (QD) nanoparticles were studied in saturated ...

A Feasibility Study on the Geophysical Response to Nanoparticles in the Subsurface

EPA Science Inventory

The research presented herein aims to determine if a spectral induced polarization (SIP) response exists due to nanoparticles in a saturated sand matrix. If a SIP response is realized in such an experimental setting, then it is feasible that SIP may be capable of delineating nano...

The evolution of cave systems from the surface to subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Loucks, R.G.; Handford, C.R.

1996-01-01

Many carbonate reservoirs are the result of cave-forming processes. The origin and recognition of fractures, breccias, and sediment fills associated with paleocaves were determined through the study of modern and paleocaves systems. Cave formation and destruction are the products of near-surface processes. Near-surface processes include solutional excavation, clastic and chemical sedimentation, and collapse of cave walls and ceilings. Cave sediment is derived from inside and/or outside the system. Depositional mechanisms include suspension, tractional, mass-flow and rock-fall. Collapse of ceilings and walls from chaotic breakdown breccias. These piles can be tens of meters thick and contain large voids and variable amountsmore » of matrix. Cave-roof crackle breccia forms from stress-and tension-related fractures in cave-roof strata. As the cave-bearing strata subside into the subsurface, mechanical compaction increases and restructures the existing breccias and remaining cavities. Fracture porosity increases and breccia and vug porosity decreases. Large cavities collapse forming burial chaotic breakdown breccias. Differentially compacted strata over the collapsed chamber fracture and form burial cave-roof crackle breccias. Continued burial leads to more extensive mechanical compaction causing previously formed clasts to fracture and pack closer together. The resulting product is a rebrecciated chaotic breakdown breccia composed predominantly of small clasts. Rebrecciated blocks are often overprinted by crackling. Subsurface paleocave systems commonly have a complex history with several episodes of fracturing and brecciation. The resulting collapsed-paleocave reservoir targets are not single collapsed passages of tens of feet across, but are homogenized collapsed-cave systems hundreds to several thousand feet across.« less

The evolution of cave systems from the surface to subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Loucks, R.G.; Handford, C.R.

1996-12-31

Many carbonate reservoirs are the result of cave-forming processes. The origin and recognition of fractures, breccias, and sediment fills associated with paleocaves were determined through the study of modern and paleocaves systems. Cave formation and destruction are the products of near-surface processes. Near-surface processes include solutional excavation, clastic and chemical sedimentation, and collapse of cave walls and ceilings. Cave sediment is derived from inside and/or outside the system. Depositional mechanisms include suspension, tractional, mass-flow and rock-fall. Collapse of ceilings and walls from chaotic breakdown breccias. These piles can be tens of meters thick and contain large voids and variable amountsmore » of matrix. Cave-roof crackle breccia forms from stress-and tension-related fractures in cave-roof strata. As the cave-bearing strata subside into the subsurface, mechanical compaction increases and restructures the existing breccias and remaining cavities. Fracture porosity increases and breccia and vug porosity decreases. Large cavities collapse forming burial chaotic breakdown breccias. Differentially compacted strata over the collapsed chamber fracture and form burial cave-roof crackle breccias. Continued burial leads to more extensive mechanical compaction causing previously formed clasts to fracture and pack closer together. The resulting product is a rebrecciated chaotic breakdown breccia composed predominantly of small clasts. Rebrecciated blocks are often overprinted by crackling. Subsurface paleocave systems commonly have a complex history with several episodes of fracturing and brecciation. The resulting collapsed-paleocave reservoir targets are not single collapsed passages of tens of feet across, but are homogenized collapsed-cave systems hundreds to several thousand feet across.« less

Origin of pockmarks and chimney structures on the flanks of the Storegga Slide, offshore Norway

USGS Publications Warehouse

Paull, C.K.; Ussler, W.; Holbrook, W.S.; Hill, T.M.; Keaten, R.; Mienert, J.; Haflidason, H.; Johnson, J.E.; Winters, W.J.; Lorenson, T.D.

2008-01-01

Seafloor pockmarks and subsurface chimney structures are common on the Norwegian continental margin north of the Storegga Slide scar. Such features are generally inferred to be associated with fluid expulsion, and imply overpressures in the subsurface. Six long gravity and piston cores taken from the interior of three pockmarks were compared with four other cores taken from the same area but outside the pockmarks, in order to elucidate the origins and stratigraphy of these features and their possible association with the Storegga Slide event. Sulfate gradients in cores from within pockmarks are less steep than those in cores from outside the pockmarks, which indicates that the flux of methane to the seafloor is presently smaller within the pockmarks than in the adjacent undisturbed sediments. This suggests that these subsurface chimneys are not fluid flow conduits lined with gas hydrate. Methane-derived authigenic carbonates and Bathymodiolus shells obtained from a pockmark at >6.3 m below the seafloor indicate that methane was previously available to support a chemosynthetic community within the pockmark. AMS 14C measurements of planktonic Foraminifera overlying and interlayered with the shell-bearing sediment indicate that methane was present on the seafloor within the pockmark prior to 14 ka 14C years B.P., i.e., well before the last major Storegga Slide event (7.2 ka 14C years B.P., or 8.2 ka calendar years B.P.). These observations provide evidence that overpressured fluids existed within the continental margin sediments off Norway during the last major advance of Pleistocene glaciation. 

Biomass, community structure and nutritional status attributes of the deep subsurface microbiota---at Idaho and Hanford sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

White, D.C.; Ringelberg, D.B.

1991-10-28

The signature lipid biomarker technique based on phospholipid ester-linked fatty acid pattern analysis (PLFA) provides data on the total viable or potentially viable communities without the necessity of: (1) Quantitative recovery from the sediments or (2) The ability to culture the organisms. Analysis of PLFA provides evidence for the nutritional status (starvation and/or unbalanced growth) in situ. PLFA analysis of SSP samples from the INEL and PNL sites vadose zones showed higher biomass at the surface with prominent Actinomyces biomarkers with lower biomasses of stressed microbiota at progressively greater depth. The biomass and community diversity increased at the water tablemore » at both sites. Both these Western sites showed lower viable microbial biomasses than the WSRS samples. Cluster analysis of the total patterns from various sedimentary horizons showed three major consortia of microbes, with surface microbiota related at both sites, low viable biomass sites closely related at both sites, with anaerobic desaturase pathway being predominant at INEL and consortia utilizing predominantly branched saturated and the aerobic desaturase pathway at both sites. Preliminary examination of the consortia recovered from NTS show a clear relationship to water level.« less

Study of sorption-retarded U(VI) diffusion in Hanford silt/clay material.

PubMed

Bai, Jing; Liu, Chongxuan; Ball, William P

2009-10-15

A diffusion cell method was applied to measure the effective pore diffusion coefficient (Dp) for U(VI) under strictly controlled chemical conditions in a silt/clay sediment from the U.S. Department of Energy Hanford site, WA. "Inward-flux" diffusion studies were conducted in which [U(VI)] in both aqueous and solid phases was measured as a function of distance in the diffusion cell under conditions of constant concentration at the cell boundaries. A sequential extraction method was developed to measure sorbed contaminant U(VI) in the solid phase containing extractable background U(VI). The effect of sorption kinetics on U(VI) interparticle diffusion was evaluated by comparing sorption-retarded diffusion models with sorption described either as equilibrium or intraparticle diffusion-limited processes. Both experimental and modeling results indicated that (1) a single pore diffusion coefficient can simulate the diffusion of total aqueous U(VI), and (2) the local equilibrium assumption (LEA) is appropriate for modeling sorption-retarded diffusion under the given experimental conditions. Dp of 1.6-1.7 x 10(-6) cm2/s was estimated in aqueous solution at pH 8.0 and saturated with respect to calcite, as relevant to some subsurface regions of the Hanford site.

Deformation of a 3D granular media caused by fluid invasion

NASA Astrophysics Data System (ADS)

Dalbe, M. J.; Juanes, R.

2016-12-01

Multiphase flow in porous media plays a fundamental role in many natural and engineered subsurface processes. The interplay between fluid flow, medium deformation and fracture is essential in geoscience problems as disparate as fracking for unconventional hydrocarbon production, conduit formation and methane venting from lake and ocean sediments, and desiccation cracks in soil. Several experimental and computational studies have shown that the competition between capillary and friction forces can lead to different regimes of deformation, from frictional fingering to hydro-capillary fracturing (Sandnes et al., Nat. Comm. 2011, Holtzman et al., PRL 2012). Most of these investigations have focused, however, on 2D or quasi-2D systems. Here, we develop an experimental set-up that allows us to observe two-phase flow in a fully 3D granular bed and measure the fluid pressure while controlling the level of confining stress. We use an index matching technique to directly visualize the injection of a liquid in a granular media saturated with another, immiscible liquid. We extract the deformation the whole granular bulk as well as at the particle level. Our results show the existence of different regimes of invasion patterns depending on key dimensionless groups that control the system.

Deformation of a 3D granular media caused by fluid invasion

NASA Astrophysics Data System (ADS)

Dalbe, Marie-Julie; Juanes, Ruben

2016-11-01

Multiphase flow in porous media plays a fundamental role in many natural and engineered subsurface processes. The interplay between fluid flow, medium deformation and fracture is essential in geoscience problems as disparate as fracking for unconventional hydrocarbon production, conduit formation and methane venting from lake and ocean sediments, and desiccation cracks in soil. Several experimental and computational studies have shown that the competition between capillary and friction forces can lead to different regimes of deformation, from frictional fingering to hydro-capillary fracturing. Most of these investigations have focused, however, on 2D or quasi-2D systems. Here, we develop an experimental set-up that allows us to observe two-phase flow in a fully 3D granular bed and measure the fluid pressure while controlling the level of confining stress. We use an index matching technique to directly visualize the injection of a liquid in a granular media saturated with another, immiscible liquid. We extract the deformation the whole granular bulk as well as at the particle level. Our results show the existence of different regimes of invasion patterns depending on key dimensionless groups that control the system.

Visualizing 3D Fracture Morphology in Granular Media

NASA Astrophysics Data System (ADS)

Dalbe, M. J.; Juanes, R.

2015-12-01

Multiphase flow in porous media plays a fundamental role in many natural and engineered subsurface processes. The interplay between fluid flow, medium deformation and fracture is essential in geoscience problems as disparate as fracking for unconventional hydrocarbon production, conduit formation and methane venting from lake and ocean sediments, and desiccation cracks in soil. Recent work has pointed to the importance of capillary forces in some relevant regimes of fracturing of granular materials (Sandnes et al., Nat. Comm. 2011), leading to the term hydro-capillary fracturing (Holtzman et al., PRL 2012). Most of these experimental and computational investigations have focused, however, on 2D or quasi-2D systems. Here, we develop an experimental set-up that allows us to observe two-phase flow in a 3D granular bed, and control the level of confining stress. We use an index matching technique to directly visualize the injection of a liquid in a granular media saturated with another, immiscible liquid. We determine the key dimensionless groups that control the behavior of the system, and elucidate different regimes of the invasion pattern. We present result for the 3D morphology of the invasion, with particular emphasis on the fracturing regime.

Method for determining formation quality factor from well log data and its application to seismic reservoir characterization

DOEpatents

Walls, Joel; Taner, M. Turhan; Dvorkin, Jack

2006-08-08

A method for seismic characterization of subsurface Earth formations includes determining at least one of compressional velocity and shear velocity, and determining reservoir parameters of subsurface Earth formations, at least including density, from data obtained from a wellbore penetrating the formations. A quality factor for the subsurface formations is calculated from the velocity, the density and the water saturation. A synthetic seismogram is calculated from the calculated quality factor and from the velocity and density. The synthetic seismogram is compared to a seismic survey made in the vicinity of the wellbore. At least one parameter is adjusted. The synthetic seismogram is recalculated using the adjusted parameter, and the adjusting, recalculating and comparing are repeated until a difference between the synthetic seismogram and the seismic survey falls below a selected threshold.

Impact of Scale-Dependent Coupled Processes on Solute Fate and Transport in the Critical Zone: Case Studies Involving Inorganic and Radioactive Contaminants

NASA Astrophysics Data System (ADS)

Jardine, P. M.; Gentry, R. W.

2011-12-01

Soil, the thin veneer of matter covering the Earths surface that supports a web of living diversity, is often abused through anthropogenic inputs of toxic waste. This subsurface regime, coupled with life sustaining surface water and groundwater is known as the "Critical Zone". The disposal of radioactive and toxic organic and inorganic waste generated by industry and various government agencies has historically involved shallow land burial or the use of surface impoundments in unsaturated soils and sediments. Presently, contaminated sites have been closing rapidly and many remediation strategies have chosen to leave contaminants in-place. As such, contaminants will continue to interact with the geosphere and investigations on long term changes and interactive processes is imperative to verify risks. In this presentation we provide a snap-shot of subsurface science research from the past 25 y that seeks to provide an improved understanding and predictive capability of multi-scale contaminant fate and transport processes in heterogeneous unsaturated and saturated environments. Investigations focus on coupled hydrological, geochemical, and microbial processes that control reactive contaminant transport and that involve multi-scale fundamental research ranging from the molecular scale (e.g. synchrotrons, electron sources, arrays) to in situ plume interrogation strategies at the macroscopic scale (e.g. geophysics, field biostimulation, coupled processes monitoring). We show how this fundamental research is used to provide multi-process, multi-scale predictive monitoring and modeling tools that can be used at contaminated sites to (1) inform and improve the technical basis for decision making, and (2) assess which sites are amenable to natural attenuation and which would benefit from source zone remedial intervention.

Form and function in hillslope hydrology: in situ imaging and characterization of flow-relevant structures

NASA Astrophysics Data System (ADS)

Jackisch, Conrad; Angermann, Lisa; Allroggen, Niklas; Sprenger, Matthias; Blume, Theresa; Tronicke, Jens; Zehe, Erwin

2017-07-01

The study deals with the identification and characterization of rapid subsurface flow structures through pedo- and geo-physical measurements and irrigation experiments at the point, plot and hillslope scale. Our investigation of flow-relevant structures and hydrological responses refers to the general interplay of form and function, respectively. To obtain a holistic picture of the subsurface, a large set of different laboratory, exploratory and experimental methods was used at the different scales. For exploration these methods included drilled soil core profiles, in situ measurements of infiltration capacity and saturated hydraulic conductivity, and laboratory analyses of soil water retention and saturated hydraulic conductivity. The irrigation experiments at the plot scale were monitored through a combination of dye tracer, salt tracer, soil moisture dynamics, and 3-D time-lapse ground penetrating radar (GPR) methods. At the hillslope scale the subsurface was explored by a 3-D GPR survey. A natural storm event and an irrigation experiment were monitored by a dense network of soil moisture observations and a cascade of 2-D time-lapse GPR trenches. We show that the shift between activated and non-activated state of the flow paths is needed to distinguish structures from overall heterogeneity. Pedo-physical analyses of point-scale samples are the basis for sub-scale structure inference. At the plot and hillslope scale 3-D and 2-D time-lapse GPR applications are successfully employed as non-invasive means to image subsurface response patterns and to identify flow-relevant paths. Tracer recovery and soil water responses from irrigation experiments deliver a consistent estimate of response velocities. The combined observation of form and function under active conditions provides the means to localize and characterize the structures (this study) and the hydrological processes (companion study Angermann et al., 2017, this issue).

Characterizing Long-Term Groundwater Conditions and Lithology for the Design of Large-Scale Borehole Heat Exchangers

NASA Astrophysics Data System (ADS)

Smith, David Charles

Construction of large scale ground coupled heat pump (GCHP) systems that operate with hundreds or even thousands of boreholes for the borehole heat exchangers (BHE) has increased in recent years with many coming on line in the past 10 years. Many large institutions are constructing these systems because of their ability to store energy in the subsurface for indoor cooling during the warm summer months and extract that energy for heating during the cool winter months. Despite the increase in GCHP system systems constructed, there have been few long term studies on how these large systems interact with the subsurface. The thermal response test (TRT) is the industry standard for determining the thermal properties of the rock and soil. The TRT is limited in that it can only be used to determine the effective thermal conductivity over the whole length of a single borehole at the time that it is administered. The TRT cannot account for long-term changes in the aquifer saturation, changes in groundwater flow, or characterize different rock and soil units by effectiveness for heat storage. This study established new methods and also the need for the characterization of the subsurface for the purpose of design and long-term monitoring for GCHP systems. These new methods show that characterizing the long-term changes in aquifer saturation and groundwater flow, and characterizing different rock and soil units are an important part of the design and planning process of these systems. A greater understanding of how large-scale GCHP systems interact with the subsurface will result in designs that perform more efficiently over a longer period of time and expensive modifications due to unforeseen changes in system performance will be reduced.

Unravelling metal mobility under complex contaminant signatures.

PubMed

de Souza Machado, Anderson Abel; Spencer, Kate L; Zarfl, Christiane; O'Shea, Francis T

2018-05-01

Metals are concerning pollutants in estuaries, where contamination can undergo significant remobilisation driven by physico-chemical forcing. Environmental concentrations of metals in estuarine sediments are often higher than natural backgrounds, but show no contiguity to potential sources. Thus, better understanding the metal mobility in estuaries is essential to improve identification of pollution sources and their accountability for environmental effects. This study aims to identify the key biogeochemical drivers of metal mobilisation on contaminated estuarine sediments through (1) evaluation of the potential mobilisation under controlled conditions, and (2) investigation of the relevance of metal mobilisation for in situ pollution levels in an area with multiple contaminant sources. Sediments from a saltmarsh adjacent to a coastal landfill, a marina, and a shipyard on the Thames Estuary (Essex, UK) were exposed in the laboratory (24h, N=96, 20°C) to water under various salinity, pH, and redox potential. Major cations, Fe(II), and trace metal concentrations were analysed in the leachate and sediment. Salinity, pH and redox had a significant effect on metal mobilisation (p<0.001), e.g. under certain conditions Fe(II) leaching was increased ~1000-fold. Measurements in situ of surface and subsurface sediment cores revealed that landfill proximity poorly explained metal spatial distribution. However, physicochemical parameters explained up to 97% of geochemically normalized metal concentrations in sediments. Organic matter and pH were dominant factors for most of the metal concentrations at the sediment surface. At subsurface, major cations (Ca, Na, Mg and K) were determinant predictors of metal concentrations. Applying the empirical model obtained in the laboratory to geochemical conditions of the studied saltmarsh it was possible to demonstrate that Fe mobilisation regulates the fate of this (and other) metal in that area. Thus, present results highlight the importance of metal mobility to control sediment pollution and estuarine fate of metals. Copyright © 2017 Elsevier B.V. All rights reserved.

Mineral storage of CO2/H2S gas mixture injection in basaltic rocks

NASA Astrophysics Data System (ADS)

Clark, D. E.; Gunnarsson, I.; Aradottir, E. S.; Oelkers, E. H.; Sigfússon, B.; Snæbjörnsdottír, S. Ó.; Matter, J. M.; Stute, M.; Júlíusson, B. M.; Gíslason, S. R.

2017-12-01

Carbon capture and storage is one solution to reducing CO2 emissions in the atmosphere. The long-term geological storage of buoyant supercritical CO2 requires high integrity cap rock. Some of the risk associated with CO2 buoyancy can be overcome by dissolving CO2 into water during its injection, thus eliminating its buoyancy. This enables injection into fractured rocks, such as basaltic rocks along oceanic ridges and on continents. Basaltic rocks are rich in divalent cations, Ca2+, Mg2+ and Fe2+, which react with CO2 dissolved in water to form stable carbonate minerals. This possibility has been successfully tested as a part of the CarbFix CO2storage pilot project at the Hellisheiði geothermal power plant in Iceland, where they have shown mineralization occurs in less than two years [1, 2]. Reykjavik Energy and the CarbFix group has been injecting a mixture of CO2 and H2S at 750 m depth and 240-250°C since June 2014; by 1 January 2016, 6290 tons of CO2 and 3530 tons of H2S had been injected. Once in the geothermal reservoir, the heat exchange and sufficient dissolution of the host rock neutralizes the gas-charged water and saturates the formation water respecting carbonate and sulfur minerals. A thermally stable inert tracer was also mixed into the stream to monitor the subsurface transport and to assess the degree of subsurface carbonation and sulfide precipitation [3]. Water and gas samples have been continuously collected from three monitoring wells and geochemically analyzed. Based on the results, mineral saturation stages have been defined. These results and tracer mass balance calculations are used to evaluate the rate and magnitude of CO2 and H2S mineralization in the subsurface, with indications that mineralization of carbon and sulfur occurs within months. [1] Gunnsarsson, I., et al. (2017). Rapid and cost-effective capture and subsurface mineral storage of carbon and sulfur. Manuscript submitted for publication. [2] Matter, J., et al. (2016). Rapid carbon mineralization for permanent disposal of anthropogenic carbon dioxide emissions. Science 352 (6291), 1312-1314. [3] Snæbjörnsdottír, S.O., et al. (2017). The chemistry and saturation states of subsurface fluids during the in-situ mineralisation of CO2 and H2S at the CarbFix site in SW-Iceland. International Journal of Greenhouse Gas Control 58, 87-102.

Connection equation and shaly-sand correction for electrical resistivity

USGS Publications Warehouse

Lee, Myung W.

2011-01-01

Estimating the amount of conductive and nonconductive constituents in the pore space of sediments by using electrical resistivity logs generally loses accuracy where clays are present in the reservoir. Many different methods and clay models have been proposed to account for the conductivity of clay (termed the shaly-sand correction). In this study, the connectivity equation (CE), which is a new approach to model non-Archie rocks, is used to correct for the clay effect and is compared with results using the Waxman and Smits method. The CE presented here requires no parameters other than an adjustable constant, which can be derived from the resistivity of water-saturated sediments. The new approach was applied to estimate water saturation of laboratory data and to estimate gas hydrate saturations at the Mount Elbert well on the Alaska North Slope. Although not as accurate as the Waxman and Smits method to estimate water saturations for the laboratory measurements, gas hydrate saturations estimated at the Mount Elbert well using the proposed CE are comparable to estimates from the Waxman and Smits method. Considering its simplicity, it has high potential to be used to account for the clay effect on electrical resistivity measurement in other systems.

Accuracy of sample dimension-dependent pedotransfer functions in estimation of soil saturated hydraulic conductivity

USDA-ARS?s Scientific Manuscript database

Saturated hydraulic conductivity Ksat is a fundamental characteristic in modeling flow and contaminant transport in soils and sediments. Therefore, many models have been developed to estimate Ksat from easily measureable parameters, such as textural properties, bulk density, etc. However, Ksat is no...

Biodegradation of crude oil in Arctic subsurface water from the Disko Bay (Greenland) is limited.

PubMed

Scheibye, Katrine; Christensen, Jan H; Johnsen, Anders R

2017-04-01

Biological degradation is the main process for oil degradation in a subsurface oil plume. There is, however, little information on the biodegradation potential of Arctic, marine subsurface environments. We therefore investigated oil biodegradation in microcosms at 2 °C containing Arctic subsurface seawater from the Disko Bay (Greenland) and crude oil at three concentrations of 2.5-10 mg/L. Within 71 days, the total petroleum hydrocarbon concentration decreased only by 18 ± 18% for an initial concentration of 5 mg/L. The saturated alkanes nC13-nC30 and the isoprenoids iC18-iC21 were biodegraded at all concentrations indicating a substantial potential for biodegradation of these compound classes. Polycyclic aromatic compounds (PACs) disappeared from the oil phase, but dissolution was the main process of removal. Analysis of diagnostic ratios indicated almost no PAC biodegradation except for the C1-naphthalenes. To conclude, the marine subsurface microorganisms from the Disko Bay had the potential for biodegradation of n-alkanes and isoprenoids while the metabolically complex and toxic PACs and their alkylated homologs remained almost unchanged. Copyright © 2016 Elsevier Ltd. All rights reserved.

Linking Specific Heterotrophic Bacterial Populations to Bioreduction of Uranium and Nitrate in Contaminated Subsurface Sediments by Using Stable Isotope Probing▿†

PubMed Central

Akob, Denise M.; Kerkhof, Lee; Küsel, Kirsten; Watson, David B.; Palumbo, Anthony V.; Kostka, Joel E.

2011-01-01

Shifts in terminal electron-accepting processes during biostimulation of uranium-contaminated sediments were linked to the composition of stimulated microbial populations using DNA-based stable isotope probing. Nitrate reduction preceded U(VI) and Fe(III) reduction in [13C]ethanol-amended microcosms. The predominant, active denitrifying microbial groups were identified as members of the Betaproteobacteria, whereas Actinobacteria dominated under metal-reducing conditions. PMID:21948831

Rates and extent of microbial debromination in the deep subseafloor biosphere

NASA Astrophysics Data System (ADS)

Berg, R. D.; Solomon, E. A.; Morris, R. M.

2013-12-01

Recent genomic and porewater geochemical data suggest that reductive dehalogenation of a wide range of halogenated organic compounds could represent an important energy source for deep subseafloor microbial communities. At continental slope sites worldwide, there is a remarkably linear relationship between porewater profiles of ammonium and bromide, indicating that the factors controlling the distribution and rates of dehalogenation have the potential to influence carbon and nitrogen cycling in the deep subsurface biosphere. Though this metabolic pathway could play an important role in the cycling of otherwise refractory pools of carbon and nitrogen in marine sediments and provide energy to microbial communities in the deep subsurface biosphere, the rates and extent of dehalogenation in marine sediments are poorly constrained. Here we report net reaction rate profiles of debromination activity in continental slope sediments, calculated from numerical modeling of porewater bromide profiles from several margins worldwide. The reaction rate profiles indicate three common zones of debromination activity in slope sediments: 1) low rates of debromination, and a potential bromine sink, in the upper sediment column correlating to the sulfate reduction zone, with net bromide removal rates from -3.6 x 10^-2 to -4.85 x 10^-1 μmol m^-2 yr^-1, 2) high rates of debromination from the sulfate-methane transition zone to ~40-100 mbsf, with net bromide release rates between 7.1 x 10^-2 to 3.9 x 10^-1 μmol m^-2 yr^-1, and 3) an inflection point at ~40-100 mbsf, below which net rates of debromination decrease by an order of magnitude and at several sites are indistinguishable from zero. These results indicate that dehalogenating activity is widely distributed in marine sediments, providing energy to fuel deep subseafloor microbial communities, with potentially important consequences for the global bromine and nitrogen cycles.

Chlorinated hydrocarbon pesticides and polychlorinated biphenyls in sediment cores from San Francisco Bay

USGS Publications Warehouse

Venkatesan, M.I.; De Leon, R. P.; VanGeen, A.; Luoma, S.N.

1999-01-01

Sediment cores of known chronology from Richardson and San Pablo Bays in San Francisco Bay, CA, were analyzed for a suite of chlorinated hydrocarbon pesticides and polychlorinated biphenyls to reconstruct a historic record of inputs. Total DDTs (DDT = 2,4'- and 4,4'-dichlorodiphenyltrichloroethane and the metabolites, 2,4'- and 4,4'-DDE, -DDD) range in concentration from 4-21 ng/g and constitute a major fraction (> 84%) of the total pesticides in the top 70 cm of Richardson Bay sediment. A subsurface maximum corresponds to a peak deposition date of 1969-1974. The first measurable DDT levels are found in sediment deposited in the late 1930's. The higher DDT inventory in the San Pablo relative to the Richardson Bay core probably reflects the greater proximity of San Pablo Bay to agricultural activities in the watershed of the Sacramento and San Joaquin rivers. Total polychlorinated biphenyls (PCBs) occur at comparable levels in the two Bays (< 1-34 ng/g). PCBs are first detected in sediment deposited during the 1930's in Richardson Bay, about a decade earlier than the onset of detectable levels of DDTs. PCB inventories in San Pablo Bay are about a factor of four higher in the last four decades than in Richardson Bay, suggesting a distribution of inputs not as strongly weighed towards the upper reaches of the estuary as DDTs. The shallower subsurface maximum in PCBs compared to DDT in the San Pablo Bay core is consistent with the imposition of drastic source control measures four these constituents in 1970 and 1977 respectively. The observed decline in DDT and PCB levels towards the surface of both cores is consistent with a dramatic drop in the input of these pollutants once the effect of sediment resuspension and mixing is taken into account.

Mercury distribution in ancient and modern sediments of northeastern Bering Sea

USGS Publications Warehouse

Nelson, C. Hans; Pierce, D.E.; Leong, K.W.; Wang, F.F.

1972-01-01

A reconnaissance of surface and subsurface sediments to a maximum depth of 244 feet below the sea floor shows that natural mercury anomalies from 0.2 to 1.3 ppm have been present in northeastern Bering Sea since early Pliocene. The anomalies and mean values are highest in modern beach (maximum 1.3 and mean 0.22 ppm Hg) and nearshore subsurface gravels (maximum 0.6 and mean .06 ppm Hg) along the highly mineralized Seward Peninsula and in organic rich silt (maximum 0.16 and mean 0.10 ppm Hg) throughout the region; the mean values are lowest in offshore sands (0.03 ppm Hg) . Although gold mining may be partially responsible for high mercury levels in the beaches near Nome, Alaska, equally high or greater concentrations of mercury occur in ancient glacial sediments immediately offshore (0.6 ppm) and in modern unpolluted beach sediments at Bluff (0.45 - 1.3 ppm); this indicates that the contamination effects of mining may be no greater than natural concentration processes in the Seward Peninsula region. The background content of mercury (0.03) throughout the central area of northeastern Bering Sea is similar to that elsewhere in the world. The low mean values (0.04 ppm) even immediately offshore from mercury-rich beaches, suggests that in the surface sediments of northeastern Bering Sea, the highest concentrations are limited to the beaches near mercury sources; occasionally, however, low mercury anomalies occur offshore in glacial drift derived from mercury source regions of Chukotka and Seward Peninsula and reworked by Pleistocene shoreline processes. The minimal values offshore may be attributable to beach entrapment of heavy minerals containing mercury and/or dilution effects of modern sedimentation.

Infiltration from an impoundment for coal‐bed natural gas, Powder River Basin, Wyoming: Evolution of water and sediment chemistry

USGS Publications Warehouse

Healy, Richard W.; Rice, Cynthia A.; Bartos, Timothy T.; P. McKinley, Michael

2008-01-01

Development of coal‐bed natural gas (CBNG) in the Powder River Basin, Wyoming, has increased substantially in recent years. Among environmental concerns associated with this development is the fate of groundwater removed with the gas. A preferred water‐management option is storage in surface impoundments. As of January 2007, permits for more than 4000 impoundments had been issued within Wyoming. A study was conducted on changes in water and sediment chemistry as water from an impoundment infiltrated the subsurface. Sediment cores were collected prior to operation of the impoundment and after its closure and reclamation. Suction lysimeters were used to collect water samples from beneath the impoundment. Large amounts of chloride (12,300 kg) and nitrate (13,500 kg as N), most of which accumulated naturally in the sediments over thousands of years, were released into groundwater by infiltrating water. Nitrate was more readily flushed from the sediments than chloride. If sediments at other impoundment locations contain similar amounts of chloride and nitrate, impoundments already permitted could release over 48 × 106 kg of chloride and 52 × 106 kg of nitrate into groundwater in the basin. A solute plume with total dissolved solid (TDS) concentrations at times exceeding 100,000 mg/L was created in the subsurface. TDS concentrations in the plume were substantially greater than those in the CBNG water (about 2300 mg/L) and in the ambient shallow groundwater (about 8000 mg/L). Sulfate, sodium, and magnesium are the dominant ions in the plume. The elevated concentrations are attributed to cation‐exchange‐enhanced gypsum dissolution. As gypsum dissolves, calcium goes into solution and is exchanged for sodium and magnesium on clays. Removal of calcium from solution allows further gypsum dissolution.

Uncertainty analysis of multi-rate kinetics of uranium desorption from sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Xiaoying; Liu, Chongxuan; Hu, Bill X.

2014-01-01

A multi-rate expression for uranyl [U(VI)] surface complexation reactions has been proposed to describe diffusion-limited U(VI) sorption/desorption in heterogeneous subsurface sediments. An important assumption in the rate expression is that its rate constants follow a certain type probability distribution. In this paper, a Bayes-based, Differential Evolution Markov Chain method was used to assess the distribution assumption and to analyze parameter and model structure uncertainties. U(VI) desorption from a contaminated sediment at the US Hanford 300 Area, Washington was used as an example for detail analysis. The results indicated that: 1) the rate constants in the multi-rate expression contain uneven uncertaintiesmore » with slower rate constants having relative larger uncertainties; 2) the lognormal distribution is an effective assumption for the rate constants in the multi-rate model to simualte U(VI) desorption; 3) however, long-term prediction and its uncertainty may be significantly biased by the lognormal assumption for the smaller rate constants; and 4) both parameter and model structure uncertainties can affect the extrapolation of the multi-rate model with a larger uncertainty from the model structure. The results provide important insights into the factors contributing to the uncertainties of the multi-rate expression commonly used to describe the diffusion or mixing-limited sorption/desorption of both organic and inorganic contaminants in subsurface sediments.« less

Thermal conductivity of hydrate-bearing sediments

USGS Publications Warehouse

Cortes, Douglas D.; Martin, Ana I.; Yun, Tae Sup; Francisca, Franco M.; Santamarina, J. Carlos; Ruppel, Carolyn D.

2009-01-01

A thorough understanding of the thermal conductivity of hydrate-bearing sediments is necessary for evaluating phase transformation processes that would accompany energy production from gas hydrate deposits and for estimating regional heat flow based on the observed depth to the base of the gas hydrate stability zone. The coexistence of multiple phases (gas hydrate, liquid and gas pore fill, and solid sediment grains) and their complex spatial arrangement hinder the a priori prediction of the thermal conductivity of hydrate-bearing sediments. Previous studies have been unable to capture the full parameter space covered by variations in grain size, specific surface, degree of saturation, nature of pore filling material, and effective stress for hydrate-bearing samples. Here we report on systematic measurements of the thermal conductivity of air dry, water- and tetrohydrofuran (THF)-saturated, and THF hydrate–saturated sand and clay samples at vertical effective stress of 0.05 to 1 MPa (corresponding to depths as great as 100 m below seafloor). Results reveal that the bulk thermal conductivity of the samples in every case reflects a complex interplay among particle size, effective stress, porosity, and fluid-versus-hydrate filled pore spaces. The thermal conductivity of THF hydrate–bearing soils increases upon hydrate formation although the thermal conductivities of THF solution and THF hydrate are almost the same. Several mechanisms can contribute to this effect including cryogenic suction during hydrate crystal growth and the ensuing porosity reduction in the surrounding sediment, increased mean effective stress due to hydrate formation under zero lateral strain conditions, and decreased interface thermal impedance as grain-liquid interfaces are transformed into grain-hydrate interfaces.

Active subsurface cellular function in the Baltic Sea Basin, IODP Exp 347

NASA Astrophysics Data System (ADS)

Reese, B. K.; Zinke, L. A.; Bird, J. T.; Lloyd, K. G.; Marshall, I.; Amend, J.; Jørgensen, B. B.

2016-12-01

The Baltic Sea Basin is a unique depositional setting that has experienced periods of glaciation and deglaciation as a result of global temperature fluctuations over the course of several hundred thousand years. This has resulted in laminated sediments formed during periods with strong permanent salinity stratification. The high sedimentation rates (100-500 cm/1000 y) make this an ideal setting to understand the microbial structure of a deep biosphere community in a high-organic matter environment. The responses of deep sediment microbial communities to variations in conditions during and after deposition are poorly understood. Samples were collected through scientific drilling during the International Ocean Discovery Program (IODP) Expedition 347 on board the Greatship Manisha, September-November 2013. We examined the active microbial community structure using the 16S rRNA gene transcript and active functional genes through metatranscriptome sequencing. Major biogeochemical shifts have been observed in response to the depositional history between the limnic, brackish, and marine phases. The microbial community structure in the BSB is diverse and reflective of the unique changes in the geochemical profile. These data further define the existence life in the deep subsurface and the survival mechanisms required for this extreme environment.

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments.

PubMed

Hernsdorf, Alex W; Amano, Yuki; Miyakawa, Kazuya; Ise, Kotaro; Suzuki, Yohey; Anantharaman, Karthik; Probst, Alexander; Burstein, David; Thomas, Brian C; Banfield, Jillian F

2017-08-01

Geological sequestration in deep underground repositories is the prevailing proposed route for radioactive waste disposal. After the disposal of radioactive waste in the subsurface, H 2 may be produced by corrosion of steel and, ultimately, radionuclides will be exposed to the surrounding environment. To evaluate the potential for microbial activities to impact disposal systems, we explored the microbial community structure and metabolic functions of a sediment-hosted ecosystem at the Horonobe Underground Research Laboratory, Hokkaido, Japan. Overall, we found that the ecosystem hosted organisms from diverse lineages, including many from the phyla that lack isolated representatives. The majority of organisms can metabolize H 2 , often via oxidative [NiFe] hydrogenases or electron-bifurcating [FeFe] hydrogenases that enable ferredoxin-based pathways, including the ion motive Rnf complex. Many organisms implicated in H 2 metabolism are also predicted to catalyze carbon, nitrogen, iron and sulfur transformations. Notably, iron-based metabolism is predicted in a novel lineage of Actinobacteria and in a putative methane-oxidizing ANME-2d archaeon. We infer an ecological model that links microorganisms to sediment-derived resources and predict potential impacts of microbial activity on H 2 consumption and retardation of radionuclide migration.

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments

USGS Publications Warehouse

Holmes, Dawn E.; O'Neil, Regina A.; Vrionis, Helen A.; N'Guessan, Lucie A.; Ortiz-Bernad, Irene; Larrahondo, Maria J.; Adams, Lorrie A.; Ward, Joy A.; Nicoll , Julie S.; Nevin, Kelly P.; Chavan, Milind A.; Johnson, Jessica P.; Long, Philip E.; Lovely, Derek R.

2007-01-01

There are distinct differences in the physiology of Geobacter species available in pure culture. Therefore, to understand the ecology of Geobacter species in subsurface environments, it is important to know which species predominate. Clone libraries were assembled with 16S rRNA genes and transcripts amplified from three subsurface environments in which Geobacter species are known to be important members of the microbial community: (1) a uranium-contaminated aquifer located in Rifle, CO, USA undergoing in situ bioremediation; (2) an acetate-impacted aquifer that serves as an analog for the long-term acetate amendments proposed for in situ uranium bioremediation and (3) a petroleum-contaminated aquifer in which Geobacter species play a role in the oxidation of aromatic hydrocarbons coupled with the reduction of Fe(III). The majority of Geobacteraceae 16S rRNA sequences found in these environments clustered in a phylogenetically coherent subsurface clade, which also contains a number of Geobacter species isolated from subsurface environments. Concatamers constructed with 43 Geobacter genes amplified from these sites also clustered within this subsurface clade. 16S rRNA transcript and gene sequences in the sediments and groundwater at the Rifle site were highly similar, suggesting that sampling groundwater via monitoring wells can recover the most active Geobacter species. These results suggest that further study of Geobacter species in the subsurface clade is necessary to accurately model the behavior of Geobacter species during subsurface bioremediation of metal and organic contaminants.

Quantifying the sources and the transit times of sediment using fallout radionuclides (7Be, 137Cs, 210Pbxs) in contrasted cultivated catchments across the world

NASA Astrophysics Data System (ADS)

Evrard, O.; Le Gall, M.; Laceby, J. P.; Foucher, A.; Lefèvre, I.; Salvador-Blanes, S.; Morera, S.; Ribolzi, O.

2017-12-01

Soil erosion and fine sediment supply to rivers are exacerbated in intensively cultivated catchments. Information on the sediment sources and transit times in rivers is required to improve our understanding of these processes and to guide the implementation of effective conservation measures. Accordingly, natural (7Be, 210Pb) and artificial (137Cs) fallout radionuclide concentrations were measured in overland flow and suspended sediment collected during the erosive season in contrasted cultivated catchments. In Laos, samples were collected in a steep catchment (Houay Pano, 12 km²) covered with cropland and teak plantations during the first flood of the monsoon in 2014. Cropland surface sources dominated the supply of sediment at the upstream sampling location (55%), whereas subsurface sources (channel, landslides) contributed the majority of material at the outlet (60%). Furthermore, the material exported from the catchment mainly consisted of re-suspended sediment. In Central France, the study was conducted in a flat and drained cultivated catchment (Louroux, 25 km²) during a sequence of winter events in 2013-2014 and 2016. Only surface material enriched in 137Cs was found to transit through the river during floods. The results demonstrated the initial re-suspension of material accumulated in the river channel during the first winter flood before the direct supply of sediment recently eroded from the hillslopes during the next events. In Peru, sediment was collected during a series of summer flood events (2017) in a river draining páramos (Ronquillo, 42 km²) that were recently put in cultivation. Preliminary results show that subsurface re-suspended material dominates the exports from this catchment. These results confirmed the utility of coupling continuous river monitoring and fallout radionuclide measurements on sediment collected in both tropical and temperate rivers to better understand sediment dynamics in these endangered habitats. The main challenges for the future application of this technique are related to the availability of detectors to analyze a large set of samples rapidly after collection, as well as the access to ultra-low background gamma spectrometry facilities.

Subsurface Environment Sampler for Improved In Situ Characterization of Subsurface Microbial Communities

NASA Astrophysics Data System (ADS)

Barnhart, E. P.; Ruppert, L. F.; Orem, W. H.; McIntosh, J. C.; Cunningham, A. B.; Fields, M. W.; Hiebert, R.; Hyatt, R.

2016-12-01

There is an increasing threat that deep aquifers, an important drinking water resource, may be contaminated by the extraction and transport of fossil fuels. This threat increases the need for improved groundwater monitoring and the ability to predict the extent to which microbial activity may remediate such contamination. The characterization of subsurface microbial communities could provide an ideal biomonitoring tool for the assessment of subsurface contamination due to prokaryotes environmental ubiquity, rapidity of response to environmental perturbation and the important role they play in hydrocarbon degradation and bioremediation. New DNA sequencing technologies provide the opportunity to cost-effectively identify the vast subsurface microbial ecosystem, but use of this new technology is restricted due to issues with sampling. Prior subsurface microbiology studies have relied on core samples that are expensive to obtain hard to collect aseptically and/or ground water samples that do not reflect in situ microbial densities or activities. The development of down-well incubation of sterile sediment with a Diffusive Microbial Sampler (DMS) has emerged as an alternative method to sample subsurface microbial communities that minimizes cost and contamination issues associated with traditional methods. We have designed a Subsurface Environment Sampler with a DMS module that could enable the anaerobic transport of the in situ microbial community from the field for laboratory bioremediation studies. This sampler could provide an inexpensive and standard method for subsurface microbial sampling which would make this tool useful for Federal, State, private and local agencies interested in monitoring contamination or the effectiveness of bioremediation activities in subsurface aquifers.

Preface

Treesearch

Robert R. Ziemer

1998-01-01

Abstract - These proceedings report on 36 years of research at the Caspar Creek Experimental Watershed, Jackson Demonstration State Forest in northwestern California. The 16 papers include discussions of streamflow, sediment production and routing, stream channel condition, soil moisture and subsurface water, nutrient cycling, aquatic and riparian habitat, streamside...

Biomass measurement of methane forming bacteria in environmental samples

NASA Technical Reports Server (NTRS)

Martz, R. F.; Sebacher, D. I.; White, D. C.

1983-01-01

Methane-forming bacteria contain unusual phytanylglycerol ether phospholipids which can be extracted from the bacteria in sediments and assayed quantitatively by high performance liquid chromatography (HPLC). In this procedure the lipids were extracted, the phospholipids recovered, hydrolyzed, purified by thin layer chromatography, derivatized and assayed by HPLC. Ether lipids were recovered quantitatively from Methanobacterium thermoautotrophicum and sediments at levels as low as 8 x 10(-14) moles. In freshwater and marine sediments the flux of methane to the atmosphere and the methane levels in the pore water reflects the recovery of the phytanyl glycerol ether lipid 'signature'. The proportion of the ether phospholipid to the total recoverable phospholipid was highest in anaerobic digester sewage sludge and deeper subsurface freshwater sediment horizons.

Depth Profile of Bacterial Metabolism and PAH Biodegradation in Bioturbated and Unbioturbated Marine Sediments

DTIC Science & Technology

2003-04-25

angiosperms Cinnamyl p-coumaric acid (pCd), ferulic acid (Fd) Synthesized only in non-woody tissues (leaves, needles) RESULTS Sediment from...dissolved free amino acids (Burdige and Martens 1990) and saturation experiment estimates (Tuominen 1995). One mL syringed samples of wet sediment were... acid (Vd) Synthesized only in vascular plants Ringyl syringealdehyde (Sl), acetosyringone (Sn), syringic acid (Sd) Synthesized only in

Making the most of CZ seismics: Improving shallow critical zone characterization using surface-wave analysis

NASA Astrophysics Data System (ADS)

Pasquet, S.; Wang, W.; Holbrook, W. S.; Bodet, L.; Carr, B.; Flinchum, B. A.

2017-12-01

Estimating porosity and saturation in the shallow subsurface over large lateral scales is vitally important for understanding the development and evolution of the Critical Zone (CZ). Because elastic properties (P- and S-wave velocities) are particularly sensitive to porosity and saturation, seismic methods (in combination with petrophysical models) are effective tools for mapping CZ architecture and processes. While many studies employ P-wave refraction methods, fewer use the surface waves that are typically also recorded in those same surveys. Here we show the value of exploiting surface waves to extract supplementary shear-wave velocity (Vs) information in the CZ. We use a new, user-friendly, open-source MATLAB-based package (SWIP) to invert surface-wave data and estimate lateral variations of Vs in the CZ. Results from synthetics show that this approach enables the resolution of physical property variations in the upper 10-15 m below the surface with lateral scales of about 5 m - a vast improvement compared to P-wave tomography alone. A field example at a Yellowstone hydrothermal system also demonstrates the benefits of including Vs in the petrophysical models to estimate not only porosity but also saturation, thus highlighting subsurface gas pathways. In light of these results, we strongly suggest that surface-wave analysis should become a standard approach in CZ seismic surveys.

Resolving the fault systems with the magnetotelluric method in the western Ilan plain of NE Taiwan

NASA Astrophysics Data System (ADS)

Chang, P. Y.; Chen, C. S.

2017-12-01

In the study we attempt to use the magnetotelluric (MT) surveys to delineate the basement topography of the western part of the Ilan plain. The triangular plain is located on the extension part of the Okinawa Trough, and is thought to be a subsidence basin bounded by the Hsueshan Range in the north and the Central Range in the south. The basement of the basin is composed of Tertiary metamorphic rocks such as argillites and slates. The recent extension of the Okinawa Trough started from approximately 0.1 Ma and involved ENE- and WSW-trending normal faults that may extended into the Ilan plain area. However, high sedimentation rates as well as the frequent human activities have resulted in unconsolidated sediments with a thickness of over 100 meters, and caused the difficulties in observing the surface traces of the active faults in the area. Hence we deployed about 70 MT stations across the southwestern tip of the triangular plain. We also tried to resolve the subsurface faults the relief variations of the basement with the inverted resistivity images, since the saturated sediments are relatively conductive and the consolidated rocks are resistive. With the inverted MT images, we found that there are a series of N-S trending horsts and grabens in addition to the ENE-WSW normal fault systems. The ENE-WSW trending faults are dipping mainly toward the north in our study area in the western tip of the Ilan plain. The preliminary results suggest that a younger N-S trending normal fault system may modify the relief of the basement in the recent stage after the activation of the ENE-WSW normal faults. The findings of the MT resistivity images provide new information to further review the tectonic explanations of the region in the future.

Petrophysical Effects during karstification

NASA Astrophysics Data System (ADS)

Mai, Franziska; Kirsch, Reinhard; Rücker, Carsten; Börner, Frank

2017-04-01

Sinkholes are depression or collapse structures caused by dissolution in the subsurface or subrosion processes and occur in a vast variety of geological settings. They pose a considerable threat to people's safety and can cause severe economic loss, especially in highly populated areas. Commonly, sinkholes are linked to anomalies in groundwater flow and to the heterogeneities in the soluble sediment. To develop an early recognition system of sinkhole instability, unrest and collapse it is necessary to obtain a better understanding of sinkhole generation. With this intent the joint project "SIMULTAN" studies sinkholes applying a combination of structural, geophysical, petrophysical, and hydrological mapping methods, accompanied by sensor development, and multi-scale monitoring. Studying the solution process of gypsum and limestone as well as the accompanying processes and their relation to hydrologic mechanisms from a petrophysical point of view is essential to understand geophysically detected anomalies related to sinkholes. The focus lies on measurements of the complex, frequency dependent electrical conductivity, the self potential and the travel time of elastic waves. First, systematic laboratory measurements of the complex electrical conductivity were conducted on samples consisting of unconsolidated sand. The fully saturated samples differed in the ionic composition of their pore water (e.g. calcium sulfate and/or sodium chloride). The results indicate that it is possible to detect effects of higher gypsum concentration in the ground- or pore-water using electrical conductivity. This includes both the karstificable sediments as well as the adjacent, non-soluble sediments like e.g. clean sand or shaly sand. To monitor karstification and subrosion processes on a field scale, a stationary measuring system was installed in Münsterdorf, Schleswig-Holstein in northern Germany, an area highly at risk of sinkhole development. The complex electrical conductivity is measured in two boreholes, located 5 meters apart. The results of these measurements are used to investigate possible solution of the subterranean chalk.

Geochemical and microbiological responses to oxidant introduction into reduced subsurface sediment from the Hanford 300 Area, Washington.

PubMed

Percak-Dennett, Elizabeth M; Roden, Eric E

2014-08-19

Pliocene-aged reduced lacustrine sediment from below a subsurface redox transition zone at the 300 Area of the Hanford site (southeastern Washington) was used in a study of the geochemical response to introduction of oxygen or nitrate in the presence or absence of microbial activity. The sediments contained large quantities of reduced Fe in the form of Fe(II)-bearing phyllosilicates, together with smaller quantities of siderite and pyrite. A loss of ca. 50% of 0.5 M HCl-extractable Fe(II) [5-10 mmol Fe(II) L(-1)] and detectable generation of sulfate (ca. 0.2 mM, equivalent to 10% of the reduced inorganic sulfur pool) occurred in sterile aerobic reactors. In contrast, no systematic loss of Fe(II) or production of sulfate was observed in any of the other oxidant-amended sediment suspensions. Detectable Fe(II) accumulation and sulfate consumption occurred in non-sterile oxidant-free reactors. Together, these results indicate the potential for heterotrophic carbon metabolism in the reduced sediments, consistent with the proliferation of known heterotrophic taxa (e.g., Pseudomonadaceae, Burkholderiaceae, and Clostridiaceae) inferred from 16S rRNA gene pyrosequencing. Microbial carbon oxidation by heterotrophic communities is likely to play an important role in maintaining the redox boundary in situ, i.e., by modulating the impact of downward oxidant transport on Fe/S redox speciation. Diffusion-reaction simulations of oxygen and nitrate consumption coupled to solid-phase organic carbon oxidation indicate that heterotrophic consumption of oxidants could maintain the redox boundary at its current position over millennial time scales.

Fungal diversity from deep marine subsurface sediments (IODP 317, Canterbury Basin, New Zealand)

NASA Astrophysics Data System (ADS)

Redou, V.; Arzur, D.; Burgaud, G.; Barbier, G.

2012-12-01

Recent years have seen a growing interest regarding micro-eukaryotic communities in extreme environments as a third microbial domain after Bacteria and Archaea. However, knowledge is still scarce and the diversity of micro-eukaryotes in such environments remains hidden and their ecological role unknown. Our research program is based on the deep sedimentary layers of the Canterbury Basin in New Zealand (IODP 317) from the subsurface to the record depth of 1884 meters below seafloor. The objectives of our study are (i) to assess the genetic diversity of fungi in deep-sea sediments and (ii) identify the functional part in order to better understand the origin and the ecological role of fungal communities in this extreme ecosystem. Fingerprinting-based methods using capillary electrophoresis single-strand conformation polymorphism and denaturing high-performance liquid chromatography were used as a first step to raise our objectives. Molecular fungal diversity was assessed using amplification of ITS1 (Internal Transcribed Spacer 1) as a biomarker on 11 samples sediments from 3.76 to 1884 meters below seafloor. Fungal molecular signatures were detected throughout the sediment core. The phyla Ascomycota and Basidiomycota were revealed with DNA as well as cDNA. Most of the phylotypes are affiliated to environmental sequences and some to common fungal cultured species. The discovery of a present and metabolically active fungal component in this unique ecosystem allows some interesting first hypotheses that will be further combined to culture-based methods and deeper molecular methods (454 pyrosequencing) to highlight essential informations regarding physiology and ecological role of fungal communities in deep marine sediments.

Magnetic Hysteresis of Deep-Sea Sediments in Korea Deep Ocean Study(KODOS) Area, NE Pacific

NASA Astrophysics Data System (ADS)

Kim, K.; Park, C.; Yoo, C.

2001-12-01

The KODOS area within the Clarion-Clipperton fracture zone (C-C zone) is surrounded by the Hawaiian and Line Island Ridges to the west and the central American continent to the east. Topography of the seafloor consists of flat-topped abyssal hills and adjacent abyssal troughs, both of which run parallel in N-S direction. Sediments from the study area consist mainly of biogenic sediments. Latitudinal zonation of sedimentary facies was caused by the accumulation of biogenic materials associated with the equatorial current system and movement of the Pacific plate toward the north or northwest. The KODOS area belongs to the latitudinal transition zone having depositional characteristics between non-fossiliferous pelagic clay-dominated zone and calcareous sediment-dominated zone. The box core sediments of the KODOS area are analyzed in an attempt to obtain magnetic hysteresis information and to elucidate the relationship between hysteresis property and lithological facies. Variations in magnetic hysteresis parameters with unit layers reflect the magnetic grain-size and concentrations within the sediments. The ratios of remanant coercivity/coercive force (Hcr/Hc) and saturation remnance/saturation magnetization (Mrs/Ms) indicate that coarse magnetic grains are mainly distributed in dark brown sediments (lower part of the sediment core samples) reflecting high Hcr/Hc and low Mrs/Ms ratios. These results are mainly caused by dissolution differences with core depth. From the plotting of the ratios of hyteresis parameters, it is indicated that magnetic minerals in cubic samples are in pseudo-single domain (PSD) state.

New preconditioning strategy for Jacobian-free solvers for variably saturated flows with Richards’ equation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lipnikov, Konstantin; Moulton, David; Svyatskiy, Daniil

2016-04-29

We develop a new approach for solving the nonlinear Richards’ equation arising in variably saturated flow modeling. The growing complexity of geometric models for simulation of subsurface flows leads to the necessity of using unstructured meshes and advanced discretization methods. Typically, a numerical solution is obtained by first discretizing PDEs and then solving the resulting system of nonlinear discrete equations with a Newton-Raphson-type method. Efficiency and robustness of the existing solvers rely on many factors, including an empiric quality control of intermediate iterates, complexity of the employed discretization method and a customized preconditioner. We propose and analyze a new preconditioningmore » strategy that is based on a stable discretization of the continuum Jacobian. We will show with numerical experiments for challenging problems in subsurface hydrology that this new preconditioner improves convergence of the existing Jacobian-free solvers 3-20 times. Furthermore, we show that the Picard method with this preconditioner becomes a more efficient nonlinear solver than a few widely used Jacobian-free solvers.« less

Viscoelasticity of multiphase fluids: future directions

NASA Astrophysics Data System (ADS)

Tisato, Nicola; Spikes, Kyle; Javadpour, Farzam

2016-04-01

Recently, it has been demonstrated that rocks saturated with bubbly fluids attenuate seismic waves as the propagating elastic wave causes a thermodynamic disequilibrium between the liquid and the gas phases. The new attenuation mechanism, which is called wave-induced-gas-exsolution-dissolution (WIGED) and previously, was only postulated, opens up new perspectives for exploration geophysics as it could potentially improve the imaging of the subsurface. In particular, accounting for WIGED during seismic inversion could allow to better decipher seismic waves to disclose information about saturating phases. This will improve, for instance, the mapping of subsurface gas-plumes that might form during anthropogenic activities or natural phenomena such as those prior to volcanic eruptions. In the present contribution we will report the theory and the numerical method utilized to calculate the seismic-wave-attenuation related to WIGED and we will underline the assumptions and the limitations related to the theory. Then, we will present the experimental and the numerical strategy that we will employ to improve WIGED theory in order to incorporate additional effects, such as the role of interfacial tensions, or to extend it to fluid-fluid interaction

Development and application of a hillslope hydrologic model

USGS Publications Warehouse

Blain, C.A.; Milly, P.C.D.

1991-01-01

A vertically integrated two-dimensional lateral flow model of soil moisture has been developed. Derivation of the governing equation is based on a physical interpretation of hillslope processes. The lateral subsurface-flow model permits variability of precipitation and evapotranspiration, and allows arbitrary specification of soil-moisture retention properties. Variable slope, soil thickness, and saturation are all accommodated. The numerical solution method, a Crank-Nicolson, finite-difference, upstream-weighted scheme, is simple and robust. A small catchment in northeastern Kansas is the subject of an application of the lateral subsurface-flow model. Calibration of the model using observed discharge provides estimates of the active porosity (0.1 cm3/cm3) and of the saturated horizontal hydraulic conductivity (40 cm/hr). The latter figure is at least an order of magnitude greater than the vertical hydraulic conductivity associated with the silty clay loam soil matrix. The large value of hydraulic conductivity derived from the calibration is suggestive of macropore-dominated hillslope drainage. The corresponding value of active porosity agrees well with a published average value of the difference between total porosity and field capacity for a silty clay loam. ?? 1991.

Analytical solutions for efficient interpretation of single-well push-pull tracer tests

NASA Astrophysics Data System (ADS)

Huang, Junqi; Christ, John A.; Goltz, Mark N.

2010-08-01

Single-well push-pull tracer tests have been used to characterize the extent, fate, and transport of subsurface contamination. Analytical solutions provide one alternative for interpreting test results. In this work, an exact analytical solution to two-dimensional equations describing the governing processes acting on a dissolved compound during a modified push-pull test (advection, longitudinal and transverse dispersion, first-order decay, and rate-limited sorption/partitioning in steady, divergent, and convergent flow fields) is developed. The coupling of this solution with inverse modeling to estimate aquifer parameters provides an efficient methodology for subsurface characterization. Synthetic data for single-well push-pull tests are employed to demonstrate the utility of the solution for determining (1) estimates of aquifer longitudinal and transverse dispersivities, (2) sorption distribution coefficients and rate constants, and (3) non-aqueous phase liquid (NAPL) saturations. Employment of the solution to estimate NAPL saturations based on partitioning and non-partitioning tracers is designed to overcome limitations of previous efforts by including rate-limited mass transfer. This solution provides a new tool for use by practitioners when interpreting single-well push-pull test results.

Fluidized-sediment pipes in Gale crater, Mars, and possible Earth analogs

USGS Publications Warehouse

Rubin, David M.; Fairen, A.G.; Frydenvang, J.; Gasnault, O.; Gelfenbaum, Guy R.; Goetz, W.; Grotzinger, J.P.; Le Mouélic, S.; Mangold, N.; Newsom, H.; Oehler, D. Z.; Rapin, W.; Schieber, J.; Wiens, R.C.

2017-01-01

Since landing in Gale crater, the Mars Science Laboratory rover Curiosity has traversed fluvial, lacustrine, and eolian sedimentary rocks that were deposited within the crater ∼3.6 to 3.2 b.y. ago. Here we describe structures interpreted to be pipes formed by vertical movement of fluidized sediment. Like many pipes on Earth, those in Gale crater are more resistant to erosion than the host rock; they form near other pipes, dikes, or deformed sediment; and some contain internal concentric or eccentric layering. These structures provide new evidence of the importance of subsurface aqueous processes in shaping the near-surface geology of Mars.

Ground penetrating radar study of a thickness of biogenic sediments in the vicinity of the Czechowskie Lake

NASA Astrophysics Data System (ADS)

Lamparski, Piotr

2014-05-01

The paper present results of investigations, which have made on a biogenic plain in the north-east part of the vicinity of the Czechowskie Lake. The basin of Lake Czechowskie occupies a deep depression located in the immediate hinterland of the maximum range of the Pomeranian Phase ice sheet in the northern part of Poland (Błaszkiewicz 2005). Drillings carried out within the peat plain in the western part of the lake basin indicate that there are relatively diversified lake sediments of up to 12 m in thickness. The ground penetrating radar profiling method (GPR) was used to determine a thickness of biogenic sediments. To tests was used GSS'I SIR SYSTEM-2000™ radar device with two antennae - the high resolution 400 MHz central frequency - for shallow prospecting of the subsurface layers and the low resolution 35 MHz - for determining the shape of the mineral bedrock. Overall, 33 GPR profiles was made all in all more than 3000 meters along and crosswise the longer axis of the biogenic plain. The range of radar penetration was set to 200 ns for 400 MHz antenna and 600 ns for the 35 MHz one, what is the equivalent respectively 4 m and 12,5 m in depth of biogenic sediments thickness. Horizontal scaling was made by GSSI survey wheel device. The thickness of biogenic sediments recognized by GPR reaches 10 meters only using 35 MHz antenna. In the case of the 400 MHz antenna, relatively high conductivity water-saturated peat and gyttia did not allow for the achievement of greater thickness than 3-4 meters testing. In a large part of the profiles was able to see the shape of the mineral bedrock in the form of a former lake basin. Also observed elevations and thresholds in the bedrock. Depth of the mineral deposits forming former lake bottom was confirmed by drillings. This study is a contribution to the Virtual Institute of Integrated Climate and Landscape Evolution Analysis -ICLEA- of the Helmholtz Association. References: Błaszkiewicz M, 2005. Późnoglacjalna i wczesnoholoceńska ewolucja obniżeń jeziornych na Pojezierzu Kociewskim (wschodnia część Pomorza). (Late Glacial and early Holocene evolution of the lake basins in the Kociewskie Lakeland - eastern part of the Pomeranian Lakeland). Prace Geograficzne, 201.

Sound Propagation in Shallow Water with an Inhomogeneous GAS-Saturated Bottom

NASA Astrophysics Data System (ADS)

Grigor'ev, V. A.; Petnikov, V. G.; Roslyakov, A. G.; Terekhina, Ya. E.

2018-05-01

We present the methods and results of numerical experiments studying the low-frequency sound propagation in one of the areas of the Arctic shelf with a randomly inhomogeneous gas-saturated bottom. The characteristics of the upper layer of bottom sedimentary rocks (sediments) used in calculations were obtained during a 3D seismic survey and trial drilling of the seafloor. We demonstrate the possibilities of substituting in numerical simulation a real bottom with a fluid homogeneous half-space where the effective value of the sound speed is equal to the average sound speed in the bottom, with averaging along the sound propagation path to a sediment depth of 0.6 wavelength in the bottom. An original technique is proposed for estimating the sound speed propagation in an upper inhomogeneous sediment layer. The technique is based on measurements of acoustic wave attenuation in water during waveguide propagation.

Mangrove sedimentation and response to relative sea-level rise

USGS Publications Warehouse

Woodroffe, CD; Rogers, K.; Mckee, Karen L.; Lovelock, CE; Mendelssohn, IA; Saintilan, N.

2016-01-01

Mangroves occur on upper intertidal shorelines in the tropics and subtropics. Complex hydrodynamic and salinity conditions influence mangrove distributions, primarily related to elevation and hydroperiod; this review considers how these adjust through time. Accumulation rates of allochthonous and autochthonous sediment, both inorganic and organic, vary between and within different settings. Abundant terrigenous sediment can form dynamic mudbanks; tides redistribute sediment, contrasting with mangrove peat in sediment-starved carbonate settings. Sediments underlying mangroves sequester carbon, but also contain paleoenvironmental records of adjustments to past sea-level changes. Radiometric dating indicates long-term sedimentation, whereas Surface Elevation Table-Marker Horizon measurements (SET-MH) provide shorter perspectives, indicating shallow subsurface processes of root growth and substrate autocompaction. Many tropical deltas also experience deep subsidence, which augments relative sea-level rise. The persistence of mangroves implies an ability to cope with moderately high rates of relative sea-level rise. However, many human pressures threaten mangroves, resulting in continuing decline in their extent throughout the tropics.

Historical trends of perfluoroalkyl substances (PFASs) in dated sediments from semi-enclosed bays of Korea.

PubMed

Shen, Aihua; Lee, Sunggyu; Ra, Kongtae; Suk, Dongwoo; Moon, Hyo-Bang

2018-03-01

Information is scarce on historical trends of perfluoroalkyl substances (PFASs) in the coastal environment. In this study, four sediment cores were collected from semi-enclosed bays of Korea to investigate the pollution history, contamination profiles, and environmental burden of PFASs. The total PFAS concentrations in sediment cores ranged from 6.61 to 821 pg/g dry weight. The highest concentrations of PFASs were found in surface or sub-surface sediments, indicating on-going contamination by PFASs. Historical trends in PFASs showed a clear increase since the 1980s, which was consistent with the global PFAS consumption pattern. Concentrations of PFASs were dependent on the organic carbon content in sediment cores. PFOS and longer-chain PFASs were predominant in all of the sediment cores. In particular, a large proportion of longer-chain PFASs was observed in the upper layers of the sediment cores from industrialized coastal regions. Inventories and fluxes estimated for PFASs were similar to those for PCDD/Fs. Copyright © 2018 Elsevier Ltd. All rights reserved.

Numerical simulation of water flow and Nitrate transport through variably saturated porous media in laboratory condition using HYDRUS 2D

NASA Astrophysics Data System (ADS)

Jahangeer, F.; Gupta, P. K.; Yadav, B. K.

2017-12-01

Due to the reducing availability of water resources and the growing competition for water between residential, industrial, and agricultural users, increasing irrigation efficiency, by several methods like drip irrigation, is a demanding concern for agricultural experts. The understanding of the water and contaminants flow through the subsurface is needed for the sustainable irrigation water management, pollution assessment, polluted site remediation and groundwater recharge. In this study, the Windows-based computer software package HYDRUS-2D, which numerically simulates water and solute movement in two-dimensional, variably-saturated porous media, was used to evaluate the distribution of water and Nitrate in the sand tank. The laboratory and simulation experiments were conducted to evaluate the role of drainage, recharge flux, and infiltration on subsurface flow condition and subsequently, on nitrate movement in the subsurface. The water flow in the unsaturated zone model by Richards' equation, which was highly nonlinear and its parameters were largely dependent on the moisture content and pressure head of the partially saturated zone. Following different cases to be considered to evaluate- a) applying drainage and recharge flux to study domains, b) transient infiltration in a vertical soil column and c) subsequently, nitrate transport in 2D sand tank setup. A single porosity model was used for the simulation of water and nitrate flow in the study domain. The results indicate the transient water table position decreases as the time increase significantly by applying drainage flux at the bottom. Similarly, the water table positions in study domains increasing in the domain by applying recharge flux. Likewise, the water flow profile shows the decreasing water table elevation with increasing water content in the vertical domain. Moreover, the nitrate movement was dominated by advective flux and highly affected by the recharge flux in the vertical direction. The findings of the study help to enhance the understanding of the sustainable soil-water resources management and agricultural practices.

Parametric study of the physical properties of hydrate-bearing sand, silt, and clay sediments: 1. Electromagnetic properties

USGS Publications Warehouse

Lee, J.Y.; Santamarina, J.C.; Ruppel, C.

2010-01-01

The marked decrease in bulk electrical conductivity of sediments in the presence of gas hydrates has been used to interpret borehole electrical resistivity logs and, to a lesser extent, the results of controlled source electromagnetic surveys to constrain the spatial distribution and predicted concentration of gas hydrate in natural settings. Until now, an exhaustive laboratory data set that could be used to assess the impact of gas hydrate on the electromagnetic properties of different soils (sand, silt, and clay) at different effective stress and with different saturations of hydrate has been lacking. The laboratory results reported here are obtained using a standard geotechnical cell and the hydrate-formed tetrahydrofuran (THF), a liquid that is fully miscible in water and able to produce closely controlled saturations of hydrate from dissolved phase. Both permittivity and electrical conductivity are good indicators of the volume fraction of free water in the sediment, which is in turn dependent on hydrate saturation. Permittivity in the microwave frequency range is particularly predictive of free water content since it is barely affected by ionic concentration, pore structure, and surface conduction. Electrical conductivity (or resistivity) is less reliable for constraining water content or hydrate saturation: In addition to fluid-filled porosity, other factors, such as the ionic concentration of the pore fluid and possibly other conduction effects (e.g., surface conduction in high specific surface soils having low conductivity pore fluid), also influence electrical conductivity.

The Influence of Coastal Wetland Zonation on Surface Sediment and Porewater Mercury Speciation

NASA Astrophysics Data System (ADS)

Marvin-DiPasquale, M. C.; Windham-Myers, L.; Wilson, A. M.; Buck, T.; Smith, E.

2014-12-01

An investigation of mercury (Hg) speciation in saltmarsh surface sediment (top 0-2 cm) and porewater (integrated 0-50 cm) was conducted along two monitoring well transects established within North Inlet Estuary (S. Carolina, USA) as part of the NOAA sponsored National Estuarine Research Reserve (NERR) network. Transects were perpendicular to the shoreline, from the forested uplands to the edge of the tidal channel, and traversed a range of vegetated zones from the high marsh (pickleweed, rush, and salt panne-dominated) to the low marsh (cordgrass dominated), as mediated by elevation and tidal inundation. Sediment grain size and organic content explained 95% of the variability in the distribution of total Hg (THg) in surface sediment. Tin-reducible 'reactive' mercury (HgR) concentration was 10X greater in the high marsh, compared to the low marsh, and increased sharply with decreasing sediment pH values below pH=6. The percentage of THg as HgR decreased as sediment redox conditions became more reducing. There were no significant differences in surface sediment methylmercury (MeHg) concentrations between high and low marsh zones. In contrast, porewater MeHg concentrations were 5X greater in the high marsh compared to the low marsh. As a percentage of THg, mean porewater %MeHg was 23% in the low marsh and 51% in the high marsh, reaching levels of 73-89% in a number of high marsh sites. Calculations of partitioning between porewater and the solid phase suggest stronger binding to particles in the low marsh and a shift towards the dissolved phase in the high marsh for both THg and MeHg. These results are consistent with a conceptual model for coastal wetlands where the less frequently inundated high marsh zone may be important in terms of MeHg production and enhanced subsurface mobilization, partially due to the subsurface mixing of saline estuarine water and freshwater draining in from the uplands area.

Investigations of young (< 2.94 Ma) Hadar Formation deposits and their implication for basin development in southern Afar, Ethiopia

NASA Astrophysics Data System (ADS)

DiMaggio, E.; Arrowsmith, R.; Campisano, C. J.; Johnson, R. A.; Deino, A. L.; Warren, M.; Fisseha, S.; Cohen, A. S.

2014-12-01

Sedimentary deposits in Pliocene extensional rift basins in the Afar Depression, Ethiopia chronicle the evolution and paleoenvironmental context of early humans. In the lower Awash Valley, the long-studied Hadar Basin still lacks constraints on basin development during the onset and termination of Hadar Formation (~3.8 - 2.94 Ma) sedimentation. Here we present new mapping and analysis of tephra deposits from a 26 meter-thick section of sediments exposed in the central Ledi-Geraru project area at Gulfaytu, including 20 m of sediments and tephras conformably overlying a 2.94 Ma tephra marker bed (BKT-2U) that previously served as the uppermost dated tephra of the Hadar Formation. Within the overlying 20 meters of primarily lacustrine strata, we identified eight post-BKT-2U tuffs; four were suitable for geochemical characterization, and one yielded an 40Ar/39Ar age of 2.931 ± 0.034 Ma. Based on regional sedimentation rates and the tephra 40Ar/39Ar age, we infer that the newly mapped Hadar Formation at Gulfaytu represents ca. 20 kyr of post-BKT-2 sedimentation. An erosional surface marked by a conglomerate truncates the strata at Gulfaytu, and shows similarities to the well-documented Busidima unconformity surface to the southwest, suggesting that structural changes after 2.93 Ma also affected basin conditions in central Ledi-Geraru. Furthermore, subsurface geophysical investigations support a model whereby deposition rates and the stratigraphic thickness of paleo-Lake Hadar sediments are greatest in the central Ledi-Geraru, ~20 km northeast of the well-exposed lacustrine-dominated sediments of the Hadar Formation. In addition to preserving a record of post-BKT-2 strata, the central Ledi Geraru hosts the thickest subsurface lacustrine sedimentary record within the Hadar Basin hitherto described, making central Ledi-Geraru an ideal location for collecting a continuous core by the Hominin Sites and Paleolakes Drilling Project (HSPDP).

Radiogenic isotopic approaches for quantifying radionuclide transport (Invited)

NASA Astrophysics Data System (ADS)

Maher, K.; Depaolo, D. J.; Singleton, M. J.; Christensen, J. N.; Conrad, M. E.

2009-12-01

Naturally occurring variations in the isotopic compositions of U and Sr provide unique opportunities for assessing the fate and transport of radionuclides at field-scale conditions. When coupled with reactive transport models, U and Sr isotopes may also provide additional constraints on the rates of sediment-fluid or sediment-waste interactions. Such isotopic approaches can be useful for sites where subsurface characterization is complicated by a lack of accessibility or the presence of substantial heterogeneity. In addition, a variety of quantitative modeling approaches of different complexity can be used to evaluate experimentally determined parameters for radionuclide mobility at the field-scale. At the Hanford Site in eastern Washington, 87Sr/86Sr and 234U/238U ratios have been used to quantify the residence time of Sr and U in the unsaturated zone, the long-term background infiltration rate through the unsaturated zone, and to assess the influence of enhanced wastewater discharge on the regional unconfined aquifer. As a result of different processing techniques or due to interactions between caustic waste and the natural sediment, waste plumes may also inherit isotopic fingerprints (e.g. 234U/238U, 235U/238U, 236U/238U; δ15N & δ18O of nitrate) that can be used to resolve multiple sources of contamination. Finally, enriched isotopic tracers can be applied to experimental manipulations to assess the retardation of a variety of contaminants. Collectively this isotopic data contributes unique perspectives on both the hydrologic conditions across the site and the mobility of key radionuclides. Predicting the long-term fate and transport of radionuclides in the environment is often challenging due to natural heterogeneity and incomplete characterization of the subsurface, however detailed analysis of isotopic variations can provide one additional means of characterizing the subsurface.

Preferential Flow Paths and Recirculation-Disrupting Jets in the Leeside of Self-Forming Coarse-Grained Laboratory Bedforms

NASA Astrophysics Data System (ADS)

Lichtner, D.; Christensen, K. T.; Best, J.; Blois, G.

2014-12-01

Exchange of fluid in the near-subsurface of a streambed is influenced by turbulence in the free flow, as well as by bed topography and permeability. Macro-roughness elements such as bedforms are known to produce pressure gradients that drive fluid into the streambed on their stoss sides and out of the bed on their lee sides. To study the modification of the near-bed flow field by self-forming permeable bedforms, laboratory experiments were conducted in a 5 mm wide flume filled with 1.3 mm glass beads. The narrow width of the flume permitted detailed examination of the fluid exiting the bed immediately downstream of a bedform. Dense 2-D velocity field measurements were gathered using particle image velocimetry (PIV). In up to 8% of instantaneous PIV realizations, the flow at the near-bed presented a component perpendicular to the streambed, indicating flow across the interface. At the downstream side of the bedform, such flow disrupted the mean recirculation pattern that is typically observed in finer sediment beds. It is hypothesized that the coarse grain size and the resulting high bed permeability promote such near-surface jet events. A qualitative analysis of raw image frames indicated that an in-place jostling of sediment is associated with these jets thus suggesting that subsurface flow may be characterized by impulsive events. These observations are relevant to hyporheic exchange rates in coarse sediments and can have strong morphodynamic implications as they can explain the lack of ripples and characteristics of dunes in high permeability gravels. Overall, further study of the flow structure over highly permeable streambeds is needed to understand subsurface exchange and bedform initiation.

MEASUREMENT OF THE VISCOELASTIC PROPERTIES OF WATER-SATURATED CLAY SEDIMENTS.

DTIC Science & Technology

The complex shear modulus of both kaolin -water and bentonite-water mixtures has been determined in the laboratory. The method involved measuring the...range two to forty-three kHz. Dispersed sediments behaved like Newtonian liquids. Undispersed sediments, however, were viscoelastic in character, and...their shear moduli exhibited no dependence on frequency. For undispersed kaolin mixtures, a typical result is (21.6 + i 1.2) x 1,000 dynes per square

A geomorphological assessments of the distribution of sediment sinks along the lower Amazon River

NASA Astrophysics Data System (ADS)

Park, E.; Latrubesse, E. M.

2017-12-01

Floodplain sediment storage budget is examined along the 1,000 km reach of the lower Amazon River based on extensive sets of remote sensing data and field measurements. Incorporating the washload discharges at gauge stations at the main channel and major tributaries, we analyzed the roles of vast floodplain on the Amazon River seasonal variability in sediment discharges. Annual washload accumulation rate on floodplain along the reach in between Manacapuru and Obidos of is estimated to be 79 Mt over inter-annual average. Period that the net loss over to the floodplain of washload coincide with discharge rising phase of the Amazon River at Obidos, when the river water level rises to make hydrologic connections to floodplain. Only during the early falling phase (July-August), 3.6 Mt of washload net gain occurred in a year, which was less than 5% of the annual net loss to the floodplain. To assess the spatial distribution of sediment sinks along the lower Amazon, we incorporated various hydro-geomorphic factors regarding floodplain geomorphic styles and morphometric parameters, such floodplain width, levee heights, water-saturated area, suspended sediment distribution over floodplain and distribution of impeded floodplain. Impeded floodplain that contains numerous large rounded lakes is the definition of active sediment sinks along the lower Amazon, which seasonally stores most of the water and traps sediment from the river. The results of these hydro-geomorphic factors collectively indicate that the extent and magnitudes of sediment sinks becomes larger downstream (from Manacapuru to Monte Alegre), which is proportionally related to the development of the water-saturated floodplain. This indicates the nonlinear geomorphic evolution of the Amazon floodplain through its longitudinal profile since the late Holocene that downstream reaches are still to be infilled with sediments (incomplete floodplain) thus acting as sediment sinks.

Subsurface low dissolved oxygen occurred at fresh- and saline-water intersection of the Pearl River estuary during the summer period.

PubMed

Li, Gang; Liu, Jiaxing; Diao, Zenghui; Jiang, Xin; Li, Jiajun; Ke, Zhixin; Shen, Pingping; Ren, Lijuan; Huang, Liangmin; Tan, Yehui

2018-01-01

Estuarine oxygen depletion is one of the worldwide problems, which is caused by the freshwater-input-derived severe stratification and high nutrients loading. In this study we presented the horizontal and vertical distributions of dissolved oxygen (DO) in the Pearl River estuary, together with temperature, salinity, chlorophyll a concentration and heterotrophic bacteria abundance obtained from two cruises during the summer (wet) and winter (dry) periods of 2015. In surface water, the DO level in the summer period was lower and varied greater, as compared to the winter period. The DO remained unsaturated in the summer period if salinity is <12 and saturated if salinity is >12; while in the winter period it remained saturated throughout the estuary. In subsurface (>5m) water, the DO level varied from 0.71 to 6.65mgL -1 and from 6.58 to 8.20mgL -1 in the summer and winter periods, respectively. Particularly, we observed an area of ~1500km 2 low DO zone in the subsurface water with a threshold of 4mgDOL -1 during this summer period, that located at the fresh- and saline-water intersection where is characterized with severe stratification and high heterotrophic bacteria abundance. In addition, our results indicate that spatial DO variability in surface water was contributed differently by biological and physio-chemical variables in the summer and winter periods, respectively. Copyright © 2017 Elsevier Ltd. All rights reserved.

The combined effects of acidification and hypoxia on pH and aragonite saturation in the coastal waters of the California current ecosystem and the northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Feely, Richard A.; Okazaki, Remy R.; Cai, Wei-Jun; Bednaršek, Nina; Alin, Simone R.; Byrne, Robert H.; Fassbender, Andrea

2018-01-01

Inorganic carbon chemistry data from the surface and subsurface waters of the West Coast of North America have been compared with similar data from the northern Gulf of Mexico to demonstrate how future changes in CO2 emissions will affect chemical changes in coastal waters affected by respiration-induced hypoxia ([O2] ≤ 60 μmol kg-1). In surface waters, the percentage change in the carbon parameters due to increasing CO2 emissions are very similar for both regions even though the absolute decrease in aragonite saturation is much higher in the warmer waters of the Gulf of Mexico. However, in subsurface waters the changes are enhanced due to differences in the initial oxygen concentration and the changes in the buffer capacity (i.e., increasing Revelle Factor) with increasing respiration from the oxidation of organic matter, with the largest impacts on pH and CO2 partial pressure (pCO2) occurring in the colder West Coast waters. As anthropogenic CO2 concentrations begin to build up in subsurface waters, increased atmospheric CO2 will expose organisms to hypercapnic conditions (pCO2 >1000 μatm) within subsurface depths. Since the maintenance of the extracellular pH appears as the first line of defense against external stresses, many biological response studies have been focused on pCO2-induced hypercapnia. The extent of subsurface exposure will occur sooner and be more widespread in colder waters due to their capacity to hold more dissolved oxygen and the accompanying weaker acid-base buffer capacity. Under present conditions, organisms in the West Coast are exposed to hypercapnic conditions when oxygen concentrations are near 100 μmol kg-1 but will experience hypercapnia at oxygen concentrations of 260 μmol kg-1 by year 2100 under the highest elevated-CO2 conditions. Hypercapnia does not occur at present in the Gulf of Mexico but will occur at oxygen concentrations of 170 μmol kg-1 by the end of the century under similar conditions. The aragonite saturation horizon is currently above the hypoxic zone in the West Coast. With increasing atmospheric CO2, it is expected to shoal up close to surface waters under the IPCC Representative Concentration Pathway (RCP) 8.5 in West Coast waters, while aragonite saturation state will exhibit steeper gradients in the Gulf of Mexico. This study demonstrates how different biological thresholds (e.g., hypoxia, CaCO3 undersaturation, hypercapnia) will vary asymmetrically because of local initial conditions that are affected differently with increasing atmospheric CO2. The direction of change in amplitude of hypercapnia will be similar in both ecosystems, exposing both biological communities from the West Coast and Gulf of Mexico to intensification of stressful conditions. However, the region of lower Revelle factors (i.e., the Gulf of Mexico), currently provides an adequate refuge habitat that might no longer be the case under the most severe RCP scenarios.

Carbonate dissolution in the South Atlantic Ocean: evidence from ultrastructure breakdown in Globigerina bulloides

NASA Astrophysics Data System (ADS)

Dittert, Nicolas; Henrich, Rüdiger

2000-04-01

Ultrastructure dissolution susceptibility of the planktic foraminifer Globigerina bulloides, carbonate ion content of the water column, calcium carbonate content of the sediment surface, and carbonate/carbon weight percentage ratio derived from sediment surface samples were investigated in order to reconstruct the position of the calcite saturation horizon, the sedimentary calcite lysocline, and the calcium carbonate compensation depth (CCD) in the modern South Atlantic Ocean. Carbonate ion data from the water column refer to the GEOSECS locations 48, 103, and 109 and calcium carbonate data come from 19 GeoB sediment surface samples of 4 transects into the Brazil, the Guinea, and the Cape Basins. We present a new (paleo-) oceanographic tool, namely the Globigerina bulloides dissolution index (BDX). Further, we give evidence (a) for progressive G. bulloides ultrastructural breakdown with increasing carbonate dissolution even above the lysocline; (b) for a sharp BDX increase at the sedimentary lysocline; and (c) for the total absence of this species at the CCD. BDX puts us in the position to distinguish the upper open ocean and the upwelling influenced continental margin above from the deep ocean below the sedimentary lysocline. Carbonate ion data from water column samples, calcite weight percentage data from surface sediment samples, and carbonate/carbon weight percentage ratio appear to be good proxies to confirm BDX. As shown by BDX both the calcite saturation horizon (in the water column) and the sedimentary lysocline (at the sediment-water interface) mark the boundary between the carbonate ion undersaturated and highly corrosive Antarctic Bottom Water and the carbonate ion saturated North Atlantic Deep Water (NADW) of the modern South Atlantic.

Fate and transport of petroleum hydrocarbons in the subsurface near Cass Lake, Minnesota

USGS Publications Warehouse

Drennan, Dina M.; Bekins, Barbara A.; Warren, Ean; Cozzarelli, Isabelle M.; Baedecker, Mary Jo; Herkelrath, William N.; Delin, Geoffrey N.; Rosenbauer, Robert J.; Campbell, Pamela L.

2010-01-01

The U.S. Geological Survey (USGS) investigated the natural attenuation of subsurface petroleum hydrocarbons leaked over an unknown number of years from an oil pipeline under the Enbridge Energy Limited Partnership South Cass Lake Pumping Station, in Cass Lake, Minnesota. Three weeks of field work conducted between May 2007 and July 2008 delineated a dissolved plume of aromatic hydrocarbons and characterized the biodegradation processes of the petroleum. Field activities included installing monitoring wells, collecting sediment cores, sampling water from wells, and measuring water-table elevations. Geochemical measurements included concentrations of constituents in both spilled and pipeline oil, dissolved alkylbenzenes and redox constituents, sediment bioavailable iron, and aquifer microbial populations. Groundwater in this area flows east-southeast at approximately 26 meters per year. Results from the oil analyses indicate a high degree of biodegradation, characterized by nearly complete absence of n-alkanes. Cass Lake oil samples were more degraded than two oil samples collected in 2008 from the similarly contaminated USGS Bemidji, Minnesota, research site 40 kilometers away. Based on 19 ratios developed for comparing oil sources, the conclusion is that the oils at the two sites appear to be from the same hydrocarbon source. In the Cass Lake groundwater plume, benzene concentrations decrease by three orders of magnitude within 150 meters (m) downgradient from the oil body floating on the water table (between well MW-10 and USGS-4 well nest). The depths of the highest benzene concentrations increase with distance downgradient from the oil, a condition typical of plumes in shallow, unconfined aquifers. Background groundwater, which is nearly saturated with oxygen, becomes almost entirely anaerobic in the plume. As at the Bemidji site, the most important biodegradation processes are anaerobic and dominated by iron reduction. The similarity between the Cass Lake and Bemidji benzene degradation rates, redox conditions, and aquifer material all support a hypothesis that the Cass Lake plume, like the Bemidji plume, is decades old. As concentrations of alkylbenzenes in the oil decrease over time, the benzene concentrations in the groundwater plume will also decrease and the plume is expected to shrink. The Fox Creek wetland, about 250 m south of the Cass Lake site, is the nearest receptor to the south.

Broadband EIT borehole measurements with high phase accuracy using numerical corrections of electromagnetic coupling effects

NASA Astrophysics Data System (ADS)

Zhao, Y.; Zimmermann, E.; Huisman, J. A.; Treichel, A.; Wolters, B.; van Waasen, S.; Kemna, A.

2013-08-01

Electrical impedance tomography (EIT) is gaining importance in the field of geophysics and there is increasing interest for accurate borehole EIT measurements in a broad frequency range (mHz to kHz) in order to study subsurface properties. To characterize weakly polarizable soils and sediments with EIT, high phase accuracy is required. Typically, long electrode cables are used for borehole measurements. However, this may lead to undesired electromagnetic coupling effects associated with the inductive coupling between the double wire pairs for current injection and potential measurement and the capacitive coupling between the electrically conductive shield of the cable and the electrically conductive environment surrounding the electrode cables. Depending on the electrical properties of the subsurface and the measured transfer impedances, both coupling effects can cause large phase errors that have typically limited the frequency bandwidth of field EIT measurements to the mHz to Hz range. The aim of this paper is to develop numerical corrections for these phase errors. To this end, the inductive coupling effect was modeled using electronic circuit models, and the capacitive coupling effect was modeled by integrating discrete capacitances in the electrical forward model describing the EIT measurement process. The correction methods were successfully verified with measurements under controlled conditions in a water-filled rain barrel, where a high phase accuracy of 0.8 mrad in the frequency range up to 10 kHz was achieved. The corrections were also applied to field EIT measurements made using a 25 m long EIT borehole chain with eight electrodes and an electrode separation of 1 m. The results of a 1D inversion of these measurements showed that the correction methods increased the measurement accuracy considerably. It was concluded that the proposed correction methods enlarge the bandwidth of the field EIT measurement system, and that accurate EIT measurements can now be made in the mHz to kHz frequency range. This increased accuracy in the kHz range will allow a more accurate field characterization of the complex electrical conductivity of soils and sediments, which may lead to the improved estimation of saturated hydraulic conductivity from electrical properties. Although the correction methods have been developed for a custom-made EIT system, they also have potential to improve the phase accuracy of EIT measurements made with commercial systems relying on multicore cables.

Time-lapse 3-D seismic imaging of shallow subsurface contaminant flow.

PubMed

McKenna, J; Sherlock, D; Evans, B

2001-12-01

This paper presents a physical modelling study outlining a technique whereby buoyant contaminant flow within water-saturated unconsolidated sand was remotely monitored utilizing the time-lapse 3-D (TL3-D) seismic response. The controlled temperature and pressure conditions, along with the high level of acquisition repeatability attainable using sandbox physical models, allow the TL3-D seismic response to pore fluid movement to be distinguished from all other effects. TL3-D seismic techniques are currently being developed to monitor hydrocarbon reserves within producing reservoirs in an endeavour to improve overall recovery. However, in many ways, sandbox models under atmospheric conditions more accurately simulate the shallow subsurface than petroleum reservoirs. For this reason, perhaps the greatest application for analogue sandbox modelling is to improve our understanding of shallow groundwater and environmental flow mechanisms. Two fluid flow simulations were conducted whereby air and kerosene were injected into separate water-saturated unconsolidated sand models. In both experiments, a base 3-D seismic volume was recorded and compared with six later monitor surveys recorded while the injection program was conducted. Normal incidence amplitude and P-wave velocity information were extracted from the TL3-D seismic data to provide visualization of contaminant migration. Reflection amplitudes displayed qualitative areal distribution of fluids when a suitable impedance contrast existed between pore fluids. TL3-D seismic reflection tomography can potentially monitor the change in areal distribution of fluid contaminants over time, indicating flow patterns. However, other research and this current work have not established a quantifiable relationship between either normal reflection amplitudes and attenuation and fluid saturation. Generally, different pore fluids will have unique seismic velocities due to differences in compressibility and density. The predictable relationships that exist between P-wave velocity and fluid saturation can allow a quantitative assessment of contaminant migration.

Monitoring microbial growth and activity using spectral induced polarization and low-field nuclear magnetic resonance

NASA Astrophysics Data System (ADS)

Zhang, Chi; Keating, Kristina; Revil, Andre

2015-04-01

Microbes and microbial activities in the Earth's subsurface play a significant role in shaping subsurface environments and are involved in environmental applications such as remediation of contaminants in groundwater and oil fields biodegradation. Stimulated microbial growth in such applications could cause wide variety of changes of physical/chemical properties in the subsurface. It is critical to monitor and determine the fate and transportation of microorganisms in the subsurface during such applications. Recent geophysical studies demonstrate the potential of two innovative techniques, spectral induced polarization (SIP) and low-field nuclear magnetic resonance (NMR), for monitoring microbial growth and activities in porous media. The SIP measures complex dielectric properties of porous media at low frequencies of exciting electric field, and NMR studies the porous structure of geologic media and characterizes fluids subsurface. In this laboratory study, we examined both SIP and NMR responses from bacterial growth suspension as well as suspension mixed with silica sands. We focus on the direct contribution of microbes to the SIP and NMR signals in the absence of biofilm formation or biomineralization. We used Zymomonas mobilis and Shewanella oneidensis (MR-1) for SIP and NMR measurements, respectively. The SIP measurements were collected over the frequency range of 0.1 - 1 kHz on Z. mobilis growth suspension and suspension saturated sands at different cell densities. SIP data show two distinct peaks in imaginary conductivity spectra, and both imaginary and real conductivities increased as microbial density increased. NMR data were collected using both CPMG pulse sequence and D-T2 mapping to determine the T2-distribution and diffusion properties on S. oneidensis suspension, pellets (live and dead), and suspension mixed with silica sands. NMR data show a decrease in the T2-distribution in S. oneidensis suspension saturated sands as microbial density increase. A clear distinction in the T2-distribution and D-T2 plots between live and dead cell pellets was also observed. These results will provide a basis for understanding the effect of microbes within geologic media on SIP and low-field NMR measurements. This research suggests that both SIP and NMR have the potential to monitor microbial growth and activities in the subsurface and could provide spatiotemporal variations in bacterial abundance in porous media.

BIOREMEDIATION OF BTEX, NAPTHALENE, AND PHENANTHRENE IN AQUIFER MATERIAL USING MIXED OXYGEN/NITRATE ELECTRON

EPA Science Inventory

The goal of the research described herein was to examine the feasibility of biodegradation of mono and polycyclic aromatic hydrocarbons typically present in a manufactured gas processing (MGP) site groundwater and subsurface sediments under mixed oxygen/denitrifying conditions. ...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lowenstien, T.K.; Casas, E.; Schubel, K.A.

Dabusun Lake (200 km{sup 2}) is a shallow ({lt}1 m) perennial saline lake in the high altitude Qaidam basin (120,000 km{sup 2}) of western China. It is underlain by {gt}40 m of salt and siliciclastic sediments ({approximately}54,000 years old). Petrographic features in two 50 m cores (chevron halite, halite cumulates, rafts, and siliciclastic mud, minor solution and no subaerial exposure features except in the top meter) indicate continuous shallow perennial lake conditions. The chemical composition of fluid inclusions trapped in halite crystals show lakewaters have generally undergone progressive concentration to the present. Modern Dabusun Lake is chemically uniform (Na-Mg-Cl-rich), nonstratified,more » and at or near halite saturation. Evaporites accumulate in zones on the restricted lake margins as halite (cumulate and raft layers with rippled surfaces and chevron mounds), halite + carnallite (KCl{center dot}MgCl{sub 2}{center dot}6H{sub 2}O), and finally carnallite (ephemeral fine-grained crystal mush). The carnallite zone merges with a 25 m wide shoreline facies, highlighted by a 1 m wide zone of halite ooids/pisoids that border a 20-30 cm tall overhanging salt crust (1967 shoreline). Lower lake levels since that time have produced vadose diagenetic features in the shoreline halites including: pendant cements, meniscus cements, halite 'popcorn,' and solution voids with muddy geopetal fills. A large flood (July-September 1989) expanded Dabusun Lake to 800 km{sup 2}, and dissolved all surface carnallite deposits. Diagenetic carnallite cements, formed by downward migration and cooking of carnallite saturated surface brines, however, remain in the subsurface to depths of 13 m. These potash mineral cements are similar in texture to many ancient potash evaporites.« less

Geomorphic factors related to the persistence of subsurface oil from the Exxon Valdez oil spill

USGS Publications Warehouse

Nixon, Zachary; Michel, Jacqueline; Hayes, Miles O.; Irvine, Gail V.; Short, Jeffrey

2013-01-01

Oil from the 1989 Exxon Valdez oil spill has persisted along shorelines of Prince William Sound, Alaska, for more than two decades as both surface and subsurface oil residues. To better understand the distribution of persistent subsurface oil and assess the potential need for further restoration, a thorough and quantitative understanding of the geomorphic factors controlling the presence or absence of subsurface oil is required. Data on oiling and geomorphic features were collected at 198 sites in Prince William Sound to identify and quantify the relationships among these geomorphic factors and the presence and absence of persistent subsurface oil. Geomorphic factors associated with the presence of subsurface oil were initial oil exposure, substrate permeability, topographic slope, low exposure to waves, armoring on gravel beaches, tombolos, natural breakwaters, and rubble accumulations. Geomorphic factors associated with the absence of subsurface oil were impermeable bedrock; platforms with thin sediment veneer; fine-grained, well-sorted gravel beaches with no armor; and low-permeability, raised bay-bottom beaches. Relationships were found between the geomorphic and physical site characteristics and the likelihood of encountering persistent subsurface oiling at those sites. There is quantitative evidence of more complex interactions between the overall wave energy incident at a site and the presence of fine-scale geomorphic features that may have provided smaller, local wave energy sheltering of oil. Similarly, these data provide evidence for interactions between the shoreline slope and the presence of angular rubble, with decreased likelihood for encountering subsurface oil at steeply sloped sites except at high-angle sheltered rubble shoreline locations. These results reinforce the idea that the interactions of beach permeability, stability, and site-specific wave exposure are key drivers for subsurface oil persistence in exposed and intermittently exposed mixed gravel beach and rocky shoreline environments.

Microbes of deep marine sediments as viewed by metagenomics

NASA Astrophysics Data System (ADS)

Biddle, J.

2015-12-01

Ten years after the first deep marine sediment metagenome was produced, questions still exist about the nucleic acid sequences we have retrieved. Current data sets, including the Peru Margin, Costa Rica Margin and Iberian Margin show that consistently, data forms larger assemblies at depth due to the reduced complexity of the microbial community. But are these organisms active or preserved? At SMTZs, a change in the assembly statistics is noted, as well as an increase in cell counts, suggesting that cells are truly active. As depth increases, genome sizes are consistently large, suggesting that much like soil microbes, sedimentary microbes may maintain a larger reportorie of genomic potential. Functional changes are seen with depth, but at many sites are not correlated to specific geochemistries. Individual genomes show changes with depth, which raises interesting questions on how the subsurface is settled and maintained. The subsurface does have a distinct genomic signature, including unusual microbial groups, which we are now able to analyze for total genomic content.

Deglacial Tropical Atlantic subsurface warming links ocean circulation variability to the West African Monsoon.

PubMed

Schmidt, Matthew W; Chang, Ping; Parker, Andrew O; Ji, Link; He, Feng

2017-11-13

Multiple lines of evidence show that cold stadials in the North Atlantic were accompanied by both reductions in Atlantic Meridional Overturning Circulation (AMOC) and collapses of the West African Monsoon (WAM). Although records of terrestrial change identify abrupt WAM variability across the deglaciation, few studies show how ocean temperatures evolved across the deglaciation. To identify the mechanism linking AMOC to the WAM, we generated a new record of subsurface temperature variability over the last 21 kyr based on Mg/Ca ratios in a sub-thermocline dwelling planktonic foraminifera in an Eastern Equatorial Atlantic (EEA) sediment core from the Niger Delta. Our subsurface temperature record shows abrupt subsurface warming during both the Younger Dryas (YD) and Heinrich Event 1. We also conducted a new transient coupled ocean-atmosphere model simulation across the YD that better resolves the western boundary current dynamics and find a strong negative correlation between AMOC strength and EEA subsurface temperatures caused by changes in ocean circulation and rainfall responses that are consistent with the observed WAM change. Our combined proxy and modeling results provide the first evidence that an oceanic teleconnection between AMOC strength and subsurface temperature in the EEA impacted the intensity of the WAM on millennial time scales.

Transport of Chemical Vapors from Subsurface Sources to Atmosphere as Affected by Shallow Subsurface and Atmospheric Conditions

NASA Astrophysics Data System (ADS)

Rice, A. K.; Smits, K. M.; Hosken, K.; Schulte, P.; Illangasekare, T. H.

2012-12-01

Understanding the movement and modeling of chemical vapor through unsaturated soil in the shallow subsurface when subjected to natural atmospheric thermal and mass flux boundary conditions at the land surface is of importance to applications such as landmine detection and vapor intrusion into subsurface structures. New, advanced technologies exist to sense chemical signatures at the land/atmosphere interface, but interpretation of these sensor signals to make assessment of source conditions remains a challenge. Chemical signatures are subject to numerous interactions while migrating through the unsaturated soil environment, attenuating signal strength and masking contaminant source conditions. The dominant process governing movement of gases through porous media is often assumed to be Fickian diffusion through the air phase with minimal or no quantification of other processes contributing to vapor migration, such as thermal diffusion, convective gas flow due to the displacement of air, expansion/contraction of air due to temperature changes, temporal and spatial variations of soil moisture and fluctuations in atmospheric pressure. Soil water evaporation and interfacial mass transfer add to the complexity of the system. The goal of this work is to perform controlled experiments under transient conditions of soil moisture, temperature and wind at the land/atmosphere interface and use the resulting dataset to test existing theories on subsurface gas flow and iterate between numerical modeling efforts and experimental data. Ultimately, we aim to update conceptual models of shallow subsurface vapor transport to include conditionally significant transport processes and inform placement of mobile sensors and/or networks. We have developed a two-dimensional tank apparatus equipped with a network of sensors and a flow-through head space for simulation of the atmospheric interface. A detailed matrix of realistic atmospheric boundary conditions was applied in a series of experiments. Water saturation, capillary pressure, air and soil temperature, and relative humidity were continuously monitored. Aqueous TCE was injected into the tank below the water table and allowed to volatilize. TCE concentration exiting the tank head space was measured through interval sampling by direct injection into a gas chromatograph. To quantify the transient concentration of TCE vapor in the soil pore space a novel use of Solid Phase Micro-Extraction (SPME) was developed. Results from our numerical simulations were compared with the experimental data, which demonstrated the importance of considering the interaction of the atmosphere with the subsurface in conceptualization and numerical model development. Results also emphasize that soil saturation and transient sorption have a significant effect on vapor transport through the vadose zone. Follow-up tests and detailed analyses are still underway. Additional applications of this work include carbon sequestration leakage, methane contamination in the shallow subsurface and environmental impact of hydraulic fracturing.

ANME-2D Archaea Catalyze Methane Oxidation in Deep Subsurface Sediments Independent of Nitrate Reduction

NASA Astrophysics Data System (ADS)

Hernsdorf, A. W.; Amano, Y.; Suzuki, Y.; Ise, K.; Thomas, B. C.; Banfield, J. F.

2015-12-01

Terrestrial sediments are an important global reservoir for methane. Microorganisms in the deep subsurface play a critical role in the methane cycle, yet much remains to be learned about their diversity and metabolisms. To provide more comprehensive insight into the microbiology of the methane cycle in the deep subsurface, we conducted a genome-resolved study of samples collected from the Horonobe Underground Research Laboratory (HURL), Japan. Groundwater samples were obtained from three boreholes from a depth range of between 140 m and 250 m in two consecutive years. Groundwater was filtered and metagenomic DNA extracted and sequenced, and the sequence data assembled. Based on the sequences of phylogenetically informative genes on the assembled fragments, we detected a high degree of overlap in community composition across a vertical transect within one borehole at the two sampling times. However, there was comparatively little similarity observed among communities across boreholes. Spatial and temporal abundance patterns were used in combination with tetranucleotide signatures of assembled genome fragments to bin the data and reconstruct over 200 unique draft genomes, of which 137 are considered to be of high quality (>90% complete). The deepest samples from one borehole were highly dominated by an archaeon identified as ANME-2D; this organism was also present at lower abundance in all other samples from that borehole. Also abundant in these microbial communities were novel members of the Gammaproteobacteria, Saccharibacteria (TM7) and Tenericute phyla. Notably, a ~2 Mbp draft genome for the ANME-2D archaeon was reconstructed. As expected, the genome encodes all of the genes predicted to be involved in the reverse methanogenesis pathway. In contrast with the previously reported ANME2-D genome, the HURL ANME-2D genome lacks the capacity to reduce nitrate. However, we identified many multiheme cytochromes with closest similarity to those of the known Fe-reducing/oxidizing archaeon Ferroglobus placidus. Thus, we suggest that ANME2-D may couple methane oxidation to reduction of ferric iron minerals in the sediment and may be generally important as a link between the iron and methane cycles in deep subsurface environments. Such information has important implications for modeling the global carbon cycle.

Microcosm studies of subsurface PAH-degrading bacteria from a former manufactured gas plant

NASA Astrophysics Data System (ADS)

Durant, Neal D.; Wilson, Liza P.; Bouwer, Edward J.

1995-01-01

A study was conducted to evaluate the potential for natural in situ biodegradation of polycyclic aromatic hydrocarbons (PAH's) in the subsurface at the site of a former manufactured gas plant. Fifty-seven samples of unconsolidated subsurface sediments were aseptically obtained from five boreholes across the site. Bacteria capable of aerobically degrading PAH's without an acclimation period were detected throughout shallow (2.7 m) and deep (24.7 m) areas of the subsurface in both relatively clean (<20 μg L -1 naphthalene) and contaminated (4400 μg L -1 naphthalene) zones. Significant ( p < 0.05) quantities of naphthalene (8±3% to 43±7%) and/or phenanthrene (3±1% to 31±3%) were mineralized in sediment-groundwater microcosms during 4 weeks of aerobic incubation at 22°C. Three samples out of 11 were able to aerobically mineralize significant quantities of benzene (6±2% to 24±1%). Of 11 samples tested for anaerobic mineralization, naphthalene biodegradation (7±1% to 13±2%) in the presence of N03 was observed in two samples. Compound removals were first order with respect to substrate concentration during the first 10-15 days of incubation. Compound biodegradation plateaued in the later stages of incubation (15-40 days), most likely from diminishing bioavailability and nutrient and oxygen depletion. Population densities in the sediments were typically low, with viable aerobic counts ranging from 0 to 10 5 CFU gdw -1, viable anaerobic counts ranging from 0 to 104 CFU gdw -1, and total counts (AODC) usually 10-fold greater than viable counts. Total counts exhibited a strong ( p < 0.01) positive correlation with sample grain size. Viable aerobic and anaerobic populations commonly occurred in the same sample, suggesting the presence of facultative anaerobes. Bacteria were metabolically active in samples from groundwaters with low pH (3.7) and high naphthalene concentrations (11,000 μg L -1). Data from these enumeration and microcosm studies suggest that natural in situ biodegradation is occurring at the site.

Trajectories of Microbial Community Function in Response to Accelerated Remediation of Subsurface Metal Contaminants

DOE Office of Scientific and Technical Information (OSTI.GOV)

Firestone, Mary

Objectives of proposed research were to; Determine if the trajectories of microbial community composition and function following organic carbon amendment can be related to, and predicted by, key environmental determinants; Assess the relative importance of the characteristics of the indigenous microbial community, sediment, groundwater, and concentration of organic carbon amendment as the major determinants of microbial community functional response and bioremediation capacity; and Provide a fundamental understanding of the microbial community ecology underlying subsurface metal remediation requisite to successful application of accelerated remediation and long-term stewardship of DOE-IFC sites.

Effects of turbulent hyporheic mixing on reach-scale solute transport

NASA Astrophysics Data System (ADS)

Roche, K. R.; Li, A.; Packman, A. I.

2017-12-01

Turbulence rapidly mixes solutes and fine particles into coarse-grained streambeds. Both hyporheic exchange rates and spatial variability of hyporheic mixing are known to be controlled by turbulence, but it is unclear how turbulent mixing influences mass transport at the scale of stream reaches. We used a process-based particle-tracking model to simulate local- and reach-scale solute transport for a coarse-bed stream. Two vertical mixing profiles, one with a smooth transition from in-stream to hyporheic transport conditions and a second with enhanced turbulent transport at the sediment-water interface, were fit to steady-state subsurface concentration profiles observed in laboratory experiments. The mixing profile with enhanced interfacial transport better matched the observed concentration profiles and overall mass retention in the streambed. The best-fit mixing profiles were then used to simulate upscaled solute transport in a stream. Enhanced mixing coupled in-stream and hyporheic solute transport, causing solutes exchanged into the shallow subsurface to have travel times similar to the water column. This extended the exponential region of the in-stream solute breakthrough curve, and delayed the onset of the heavy power-law tailing induced by deeper and slower hyporheic porewater velocities. Slopes of observed power-law tails were greater than those predicted from stochastic transport theory, and also changed in time. In addition, rapid hyporheic transport velocities truncated the hyporheic residence time distribution by causing mass to exit the stream reach via subsurface advection, yielding strong exponential tempering in the in-stream breakthrough curves at the timescale of advective hyporheic transport through the reach. These results show that strong turbulent mixing across the sediment-water interface violates the conventional separation of surface and subsurface flows used in current models for solute transport in rivers. Instead, the full distribution of flow and mixing over the surface-subsurface continuum must be explicitly considered to properly interpret solute transport in coarse-bed streams.

Understanding magnetic remanence acquisition through combined synthetic sediment deposition experiments and numerical simulations.

NASA Astrophysics Data System (ADS)

Bilardello, D.

2014-12-01

Understanding depositional remanent magnetizations (DRMs) bears implications on interpreting paleomagnetic and paleointensity records extracted from sedimentary rocks. Laboratory deposition experiments have yielded DRMs with shallow remanent inclinations and revealed a field dependence of the magnetization (M), which is orders of magnitude lower than the saturation remanence. To investigate these observations further, experiments involving differently shaped particles were performed. Spherical particles confirmed the field dependence of both the inclination error and M and the fact that the DRM acquired experimentally is lower than saturation. A sediment concentration dependence of the inclination error was observed, indicating a dependance of the inclination error on the sediment load/burial depth or the sedimentation rate. Other outcome was the certainty that spherical particles alone can lead to substantial inclination shallowing. Numerical simulations of settling spherical particles indicated that DRM should be ~10 times lower than the saturation remanence and predicted that rolling of the grains on the sediment surface and particle interactions during settling can produce a substantial shallowing of the inclination and lowering of the remanence, bringing the simulations in close agreement to the experimental results. Experiments involving platy particles, instead allowed interesting comparisons and gave insight into the behavior of differently shaped particles, for instance yielding smaller amounts of shallowing than spheres, in contrast to general belief. Viewing DRM as an anisotropic process allows fitting the experimental results with tensors (kDRM). The ratios of kvertical over khorizontal are in good agreement to the ratios of M obtained in vertical over horizontal experimental fields, which should be equivalent to the widely used inclination shallowing factor f. Experimental results were highly repeatabile, however not always as repeatable for both M and inclination (direction) for both particle shapes, heighlighting that while a sediment might carry a stable remanent direction, it may not always be a particularily good paleointensity recorder.

Dissolution rates of subsoil limestone in a doline on the Akiyoshi-dai Plateau, Japan: An approach from a weathering experiment, hydrological observations, and electrical resistivity tomography

NASA Astrophysics Data System (ADS)

Akiyama, Sanae; Hattanji, Tsuyoshi; Matsushi, Yuki; Matsukura, Yukinori

2015-10-01

This study aims at estimating the controlling factors for the denudation rates of limestone, which often forms solution dolines on karst tablelands. Our approaches include (1) electrical resistivity tomography (ERT) to reveal shallow subsurface structures and hydrological settings, (2) automated monitoring of volumetric water content in soil profiles and manual measurements of subsurface CO2 concentrations and soil water chemistry, and (3) a field weathering experiment using limestone tablets with the micro-weight loss technique for determining current denudation rates. The field experiment and monitoring were carried out over 768 days from 2009-2011 at four sites with varying topographic and hydrological conditions along the sideslope of a doline on the Akiyoshi-dai karst plateau in SW-Japan. The installation depths of the limestone tablets were 15 cm or 50 cm below the slope surface. The soil moisture conditions varied site by site. Water-saturated conditions continued for 40-50% of the whole experimental period at 50-cm depth of upper and middle sites, while only 0-10% of the experimental period was water-saturated at the other sites. Chemical analysis revealed that the soil water was chemically unsaturated with calcite for all the sites. Spatial differences in concentrations of CO2 in soil pore air were statistically less significant. The denudation rates of the buried limestone tablets were 17.7-21.9 mg cm- 2 a- 1 at the upper and middle slopes, where the soil was water-saturated for a long time after precipitation. The lowest denudation of 3.9 mg cm- 2 a- 1 was observed on lower slopes where soil was not capable of maintaining water at a near saturation level even after precipitation. Statistical analysis revealed that the denudation rates of the tablets were strongly controlled by the duration for which soil pores were saturated by water (the conditions defined here are degrees of water saturation greater than 97%). Electrical resistivity tomography indicated that areas with high soil moisture conditions were located at the deeper zone on the lower slopes and the bottom of the doline, where denudation would be faster.

Neotectonic Activity from the Upper Reaches of the Arabian Gulf and Possibilities of New Oil Fields

NASA Astrophysics Data System (ADS)

Sissakian, V. K.; Abdul Ahad, A. D.; Al-Ansari, N.; Knutsson, S.

2018-03-01

Upper reaches of the Arabian Gulf consist of different types of fine sediments including the vast Mesopotamia Plain sediments, tidal flat sediments and estuarine sabkha sediments. The height of the plain starts from zero meter and increases northwards to three meters with extremely gentle gradient. The vast plain to the north of the Arabian Gulf is drained by Shat Al-Arab (Shat means river in Iraqi slang language) and Khor Al-Zubair (Khor means estuary). The former drains the extreme eastern part of the plain; whereas, the latter drains the western part. Shat Al-Arab is the resultant of confluence of the Tigris and Euphrates rivers near Al-Qurna town; about 160 km north of the Arabian Gulf mouth at Al-Fao town; whereas, the length of Khor Al-Zubair is about 50 km; as measured from Um Qasir Harbor. The drainage system around Khor Al-Zubair is extremely fine dendritic; whereas around Shat Al-Arab is almost parallel running from both sides of the river towards the river; almost perpendicularly. The fine dendritic drainage around Khor Al-Zubair shows clear recent erosional activity, beside water divides, abandoned irrigation channels and dislocated irrigational channels and estuarine distributaries; all are good indication for a Neotectonic activity in the region. These may indicate the presence of subsurface anticlines, which may represent oil fields; since tens of subsurface anticlines occur in near surroundings, which are oil fields.

Key subsurface data help to refine Trinity aquifer hydrostratigraphic units, south-central Texas

USGS Publications Warehouse

Blome, Charles D.; Clark, Allan K.

2014-01-01

The geologic framework and hydrologic characteristics of aquifers are important components for studying the nation’s subsurface heterogeneity and predicting its hydraulic budgets. Detailed study of an aquifer’s subsurface hydrostratigraphy is needed to understand both its geologic and hydrologic frameworks. Surface hydrostratigraphic mapping can also help characterize the spatial distribution and hydraulic connectivity of an aquifer’s permeable zones. Advances in three-dimensional (3-D) mapping and modeling have also enabled geoscientists to visualize the spatial relations between the saturated and unsaturated lithologies. This detailed study of two borehole cores, collected in 2001 on the Camp Stanley Storage Activity (CSSA) area, provided the foundation for revising a number of hydrostratigraphic units representing the middle zone of the Trinity aquifer. The CSSA area is a restricted military facility that encompasses approximately 4,000 acres and is located in Boerne, Texas, northwest of the city of San Antonio. Studying both the surface and subsurface geology of the CSSA area are integral parts of a U.S. Geological Survey project funded through the National Cooperative Geologic Mapping Program. This modification of hydrostratigraphic units is being applied to all subsurface data used to construct a proposed 3-D EarthVision model of the CSSA area and areas to the south and west.

Scale-Dependent Solute Dispersion in Variably Saturated Porous Media

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rockhold, Mark L.; Zhang, Z. F.; Bott, Yi-Ju

2016-03-29

This work was performed to support performance assessment (PA) calculations for the Integrated Disposal Facility (IDF) at the Hanford Site. PA calculations require defensible estimates of physical, hydraulic, and transport parameters to simulate subsurface water flow and contaminant transport in both the near- and far-field environments. Dispersivity is one of the required transport parameters.

Adapting HYDRUS-1D to simulate overland flow and reactive transport during sheet flow deviations

USDA-ARS?s Scientific Manuscript database

The HYDRUS-1D code is a popular numerical model for solving the Richards equation for variably-saturated water flow and solute transport in porous media. This code was adapted to solve rather than the Richards equation for subsurface flow the diffusion wave equation for overland flow at the soil sur...

The extent of ocean acidification on aragonite saturation state along the Washington-Oregon continental shelf margin in late summer 2012

NASA Astrophysics Data System (ADS)

Feely, R. A.; Alin, S. R.; Hales, B. R.; Juranek, L.; Greeley, D.

2012-12-01

The Washington-Oregon continental shelf region is exposed to conditions of low aragonite saturation state during the late spring/early summer upwelling season. However, the extent of its evolution in late summer/early fall has been largely unknown. Along this continental margin, ocean acidification, upwelling, biological productivity, and respiration processes in subsurface waters are major contributors to the variability in dissolved inorganic carbon (DIC), pH and aragonite saturation state. The persistence of water with aragonite saturation state <1 on the continental shelf off Washington and Oregon has been previously identified and could have profound ecological consequences for benthic and pelagic calcifying organisms such as mussels, oysters, abalone, echinoderms, and pteropods. In the late summer of 2012 we studied the extent of acidification conditions employing shipboard cruises and profiling gliders. We conducted several large-scale chemical and hydrographic surveys of the region in order to better understand the interrelationships between these natural and human-induced processes and their effects on aragonite saturation. We will compare the results of these new surveys with our previous work in 2011 and 2007.

Spatial Distribution of an Uranium-Respiring Betaproteobacterium at the Rifle, CO Field Research Site

PubMed Central

Koribanics, Nicole M.; Tuorto, Steven J.; Lopez-Chiaffarelli, Nora; McGuinness, Lora R.; Häggblom, Max M.; Williams, Kenneth H.; Long, Philip E.; Kerkhof, Lee J.

2015-01-01

The Department of Energy’s Integrated Field-Scale Subsurface Research Challenge Site (IFRC) at Rifle, Colorado was created to address the gaps in knowledge on the mechanisms and rates of U(VI) bioreduction in alluvial sediments. Previous studies at the Rifle IFRC have linked microbial processes to uranium immobilization during acetate amendment. Several key bacteria believed to be involved in radionuclide containment have been described; however, most of the evidence implicating uranium reduction with specific microbiota has been indirect. Here, we report on the cultivation of a microorganism from the Rifle IFRC that reduces uranium and appears to utilize it as a terminal electron acceptor for respiration with acetate as electron donor. Furthermore, this bacterium constitutes a significant proportion of the subsurface sediment community prior to biostimulation based on TRFLP profiling of 16S rRNA genes. 16S rRNA gene sequence analysis indicates that the microorganism is a betaproteobacterium with a high similarity to Burkholderia fungorum. This is, to our knowledge, the first report of a betaproteobacterium capable of uranium respiration. Our results indicate that this microorganism occurs commonly in alluvial sediments located between 3-6 m below ground surface at Rifle and may play a role in the initial reduction of uranium at the site. PMID:25874721

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments

PubMed Central

Hernsdorf, Alex W; Amano, Yuki; Miyakawa, Kazuya; Ise, Kotaro; Suzuki, Yohey; Anantharaman, Karthik; Probst, Alexander; Burstein, David; Thomas, Brian C; Banfield, Jillian F

2017-01-01

Geological sequestration in deep underground repositories is the prevailing proposed route for radioactive waste disposal. After the disposal of radioactive waste in the subsurface, H2 may be produced by corrosion of steel and, ultimately, radionuclides will be exposed to the surrounding environment. To evaluate the potential for microbial activities to impact disposal systems, we explored the microbial community structure and metabolic functions of a sediment-hosted ecosystem at the Horonobe Underground Research Laboratory, Hokkaido, Japan. Overall, we found that the ecosystem hosted organisms from diverse lineages, including many from the phyla that lack isolated representatives. The majority of organisms can metabolize H2, often via oxidative [NiFe] hydrogenases or electron-bifurcating [FeFe] hydrogenases that enable ferredoxin-based pathways, including the ion motive Rnf complex. Many organisms implicated in H2 metabolism are also predicted to catalyze carbon, nitrogen, iron and sulfur transformations. Notably, iron-based metabolism is predicted in a novel lineage of Actinobacteria and in a putative methane-oxidizing ANME-2d archaeon. We infer an ecological model that links microorganisms to sediment-derived resources and predict potential impacts of microbial activity on H2 consumption and retardation of radionuclide migration. PMID:28350393

Assessment of a Hydroxyapatite Permeable Reactive Barrier to Remediate Uranium at the Old Rifle Site Colorado.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moore, Robert C.; Szecsody, James; Rigali, Mark J.

We have performed an initial evaluation and testing program to assess the effectiveness of a hydroxyapatite (Ca10(PO4)6(OH)2) permeable reactive barrier and source area treatment to decrease uranium mobility at the Department of Energy (DOE) former Old Rifle uranium mill processing site in Rifle, western Colorado. Uranium ore was processed at the site from the 1940s to the 1970s. The mill facilities at the site as well as the uranium mill tailings previously stored there have all been removed. Groundwater in the alluvial aquifer beneath the site still contains elevated concentrations of uranium, and is currently used for field tests tomore » study uranium behavior in groundwater and investigate potential uranium remediation technologies. The technology investigated in this work is based on in situ formation of apatite in sediment to create a subsurface apatite PRB and also for source area treatment. The process is based on injecting a solution containing calcium citrate and sodium into the subsurface for constructing the PRB within the uranium plume. As the indigenous sediment micro-organisms biodegrade the injected citrate, the calcium is released and reacts with the phosphate to form hydroxyapatite (precipitate). This paper reports on proof-of-principle column tests with Old Rifle sediment and synthetic groundwater.« less

Molecular evidence of Late Archean archaea and the presence of a subsurface hydrothermal biosphere

PubMed Central

Ventura, Gregory T.; Kenig, Fabien; Reddy, Christopher M.; Schieber, Juergen; Frysinger, Glenn S.; Nelson, Robert K.; Dinel, Etienne; Gaines, Richard B.; Schaeffer, Philippe

2007-01-01

Highly cracked and isomerized archaeal lipids and bacterial lipids, structurally changed by thermal stress, are present in solvent extracts of 2,707- to 2,685-million-year-old (Ma) metasedimentary rocks from Timmins, ON, Canada. These lipids appear in conventional gas chromatograms as unresolved complex mixtures and include cyclic and acyclic biphytanes, C36–C39 derivatives of the biphytanes, and C31–C35 extended hopanes. Biphytane and extended hopanes are also found in high-pressure catalytic hydrogenation products released from solvent-extracted sediments, indicating that archaea and bacteria were present in Late Archean sedimentary environments. Postdepositional, hydrothermal gold mineralization and graphite precipitation occurred before metamorphism (≈2,665 Ma). Late Archean metamorphism significantly reduced the kerogen's adsorptive capacity and severely restricted sediment porosity, limiting the potential for post-Archean additions of organic matter to the samples. Argillites exposed to hydrothermal gold mineralization have disproportionately high concentrations of extractable archaeal and bacterial lipids relative to what is releasable from their respective high-pressure catalytic hydrogenation product and what is observed for argillites deposited away from these hydrothermal settings. The addition of these lipids to the sediments likely results from a Late Archean subsurface hydrothermal biosphere of archaea and bacteria. PMID:17726114

Spatial distribution of an uranium-respiring betaproteobacterium at the Rifle, CO field research site

DOE PAGES

Koribanics, Nicole M.; Tuorto, Steven J.; Lopez-Chiaffarelli, Nora; ...

2015-04-13

The Department of Energy’s Integrated Field-Scale Subsurface Research Challenge Site (IFRC) at Rifle, Colorado was created to address the gaps in knowledge on the mechanisms and rates of U(VI) bioreduction in alluvial sediments. Previous studies at the Rifle IFRC have linked microbial processes to uranium immobilization during acetate amendment. Several key bacteria believed to be involved in radionuclide containment have been described; however, most of the evidence implicating uranium reduction with specific microbiota has been indirect. Here, we report on the cultivation of a microorganism from the Rifle IFRC that reduces uranium and appears to utilize it as a terminalmore » electron acceptor for respiration with acetate as electron donor. Furthermore, this bacterium constitutes a significant proportion of the subsurface sediment community prior to biostimulation based on TRFLP profiling of 16S rRNA genes. 16S rRNA gene sequence analysis indicates that the microorganism is a betaproteobacterium with a high similarity to Burkholderia fungorum. This is, to our knowledge, the first report of a betaproteobacterium capable of uranium respiration. Our results indicate that this microorganism occurs commonly in alluvial sediments located between 3-6 m below ground surface at Rifle and may play a role in the initial reduction of uranium at the site.« less

Potential Physiologies of Deep Branches on the Tree of Life with Deep Subsurface Samples from IODP Leg 347: Baltic Sea Paleoenvironment

NASA Astrophysics Data System (ADS)

Lloyd, K. G.; Bird, J. T.; Shumaker, A.

2014-12-01

Very little is known about how evolutionary branches that are distantly related to cultured microorganisms make a living in the deep subsurface marine environment. Here, sediments are cut-off from surface inputs of organic substrates for tens of thousands of years; yet somehow support a diverse population of microorganisms. We examined the potential metabolic and ecological roles of uncultured archaea and bacteria in IODP Leg 347: Baltic Sea Paleoenvironment samples, using quantitative PCR holes 60B, 63E, 65C, and 59C and single cell genomic analysis for hole 60B. We quantified changes in total archaea and bacteria, as well as deeply-branching archaeal taxa with depth. These sediment cores alternate between high and low salinities, following a glacial cycle. This allows changes in the quantities of these groups to be placed in the context of potentially vastly different organic matter sources. In addition, single cells were isolated, and their genomes were amplified and sequenced to allow a deeper look into potential physiologies of uncultured deeply-branching organisms found up to 86 meters deep in marine sediments. Together, these data provide deeper insight into the relationship between microorganisms and their organic matter substrates in this extreme environments.

Adsorption and Retardation of PFASs in Soil

NASA Astrophysics Data System (ADS)

Chen, W.; Yan, N.; Fu, X.; Carroll, K. C.; Holguin, F. O. O.; Brusseau, M. L.

2017-12-01

Per- and poly-fluorinated alkyl substances (PFASs) are emerging contaminants of concern that are present in the subsurface at numerous military and industrial facilities. Knowledge of the retention behavior of these compounds in the subsurface environment is critical for effective risk characterization and remediation. The objective of this research is to investigate the role of adsorption at the air-water interface on PFAS retention in vadose-zone systems. Surface tensions were measured for select PFAS to determine interfacial adsorption coefficients. Column experiments were conducted to characterize retardation and transport under saturated and unsaturated flow conditions. The impact of soil properties and groundwater constituents on surface tension, solid-phase adsorption, and interfacial adsorption was investigated.

Impacts of Land-applied Wastes from Concentrated Animal Feeding Operations on Aquatic Organisms

EPA Science Inventory

Midwest agricultural fields typically have subsurface tile-drain networks that facilitate transport of excess water from fields to a ditch network system, which can contain sediments, nutrients and pesticides as well as hormones from fields fertilized with manure and associated l...

DETERMINATION OF TRANSFORMATION RATES OF CHIRAL PESTICIDES AND PCBS IN SOIL AND SEDIMENT MICROCOSMS

EPA Science Inventory

Risk Based Corrective Action (RBCA) has gained widespread acceptance as a favorable approach to remediating contaminated sites. The use of RBCA methods often requires computer-based modeling to assess the fate and transport of hazardous contaminants in subsurface environments, a...

Remote Sensing and Underwater Glider Observations of a Springtime Plume in Western Lake Superior

EPA Science Inventory

Plumes are commonly observed in satellite imagery of western Lake Superior following storm events, and represent a significant cross-shelf pathway for sediment and other constituents. However, their subsurface extent is poorly understood. This study reports results from plume ob...

Attenuation and colloidal mobilization of bacteriophages in natural sediments under anoxic as compared to oxic conditions.

PubMed

Klitzke, Sondra; Schroeder, Jendrik; Selinka, Hans-Christoph; Szewzyk, Regine; Chorus, Ingrid

2015-06-15

Redox conditions are known to affect the fate of viruses in porous media. Several studies report the relevance of colloid-facilitated virus transport in the subsurface, but detailed studies on the effect of anoxic conditions on virus retention in natural sediments are still missing. Therefore, we investigated the fate of viruses in natural flood plain sediments with different sesquioxide contents under anoxic conditions by considering sorption to the solid phase, sorption to mobilized colloids, and inactivation in the aqueous phase. Batch experiments were conducted under oxic and anoxic conditions at pH values between 5.1 and 7.6, using bacteriophages MS2 and PhiX174 as model viruses. In addition to free and colloid-associated bacteriophages, dissolved and colloidal concentrations of Fe, Al and organic C as well as dissolved Ca were determined. Results showed that regardless of redox conditions, bacteriophages did not adsorb to mobilized colloids, even under favourable charge conditions. Under anoxic conditions, attenuation of bacteriophages was dominated by sorption over inactivation, with MS2 showing a higher degree of sorption than PhiX174. Inactivation in water was low under anoxic conditions for both bacteriophages with about one log10 decrease in concentration during 16 h. Increased Fe/Al concentrations and a low organic carbon content of the sediment led to enhanced bacteriophage removal under anoxic conditions. However, even in the presence of sufficient Fe/A-(hydr)oxides on the solid phase, bacteriophage sorption was low. We presume that organic matter may limit the potential retention of sesquioxides in anoxic sediments and should thus be considered for the risk assessment of virus breakthrough in the subsurface. Copyright © 2015 Elsevier B.V. All rights reserved.

Influence of Hydrological Perturbations and Riverbed Sediment Characteristics on Hyporheic Zone Respiration of CO2 and N2

NASA Astrophysics Data System (ADS)

Newcomer, Michelle E.; Hubbard, Susan S.; Fleckenstein, Jan H.; Maier, Ulrich; Schmidt, Christian; Thullner, Martin; Ulrich, Craig; Flipo, Nicolas; Rubin, Yoram

2018-03-01

Rivers in climatic zones characterized by dry and wet seasons often experience periodic transitions between losing and gaining conditions across the river-aquifer continuum. Infiltration shifts can stimulate hyporheic microbial biomass growth and cycling of riverine carbon and nitrogen leading to major exports of biogenic CO2 and N2 to rivers. In this study, we develop and test a numerical model that simulates biological-physical feedback in the hyporheic zone. We used the model to explore different initial conditions in terms of dissolved organic carbon availability, sediment characteristics, and stochastic variability in aerobic and anaerobic conditions from water table fluctuations. Our results show that while highly losing rivers have greater hyporheic CO2 and N2 production, gaining rivers allowed the greatest fraction of CO2 and N2 production to return to the river. Hyporheic aerobic respiration and denitrification contributed 0.1-2 g/m2/d of CO2 and 0.01-0.2 g/m2/d of N2; however, the suite of potential microbial behaviors varied greatly among sediment characteristics. We found that losing rivers that consistently lacked an exit pathway can store up to 100% of the entering C/N as subsurface biomass and dissolved gas. Our results demonstrate the importance of subsurface feedbacks whereby microbes and hydrology jointly control fate of C and N and are strongly linked to wet-season control of initial sediment conditions and hydrologic control of seepage direction. These results provide a new understanding of hydrobiological and sediment-based controls on hyporheic zone respiration, including a new explanation for the occurrence of anoxic microzones and large denitrification rates in gravelly riverbeds.

Rates of microbial metabolism in deep coastal plain aquifers

USGS Publications Warehouse

Chapelle, F.H.; Lovley, D.R.

1990-01-01

Rates of microbial metabolism in deep anaerobic aquifers of the Atlantic coastal plain of South Carolina were investigated by both microbiological and geochemical techniques. Rates of [2-14C]acetate and [U-14C]glucose oxidation as well as geochemical evidence indicated that metabolic rates were faster in the sandy sediments composing the aquifers than in the clayey sediments of the confining layers. In the sandy aquifer sediments, estimates of the rates of CO2 production (millimoles of CO2 per liter per year) based on the oxidation of [2-14C]acetate were 9.4 x 10-3 to 2.4 x 10-1 for the Black Creek aquifer, 1.1 x 10-2 for the Middendorf aquifer, and <7 x 10-5 for the Cape Fear aquifer. These estimates were at least 2 orders of magnitude lower than previously published estimates that were based on the accumulation of CO2 in laboratory incubations of similar deep subsurface sediments. In contrast, geochemical modeling of groundwater chemistry changes along aquifer flowpaths gave rate estimates that ranged from 10-4 to 10-6 mmol of CO2 per liter per year. The age of these sediments (ca. 80 million years) and their organic carbon content suggest that average rates of CO2 production could have been no more than 10-4 mmol per liter per year. Thus, laboratory incubations may greatly overestimate the in situ rates of microbial metabolism in deep subsurface environments. This has important implications for the use of laboratory incubations in attempts to estimate biorestoration capacities of deep aquifers. The rate estimates from geochemical modeling indicate that deep aquifers are among the most oligotrophic aquatic environments in which there is ongoing microbial metabolism.

Stimulation of Microbially Mediated Arsenic Release in Bangladesh Aquifers by Young Carbon Indicated by Radiocarbon Analysis of Sedimentary Bacterial Lipids.

PubMed

Whaley-Martin, K J; Mailloux, B J; van Geen, A; Bostick, B C; Silvern, R F; Kim, C; Ahmed, K M; Choudhury, I; Slater, G F

2016-07-19

The sources of reduced carbon driving the microbially mediated release of arsenic to shallow groundwater in Bangladesh remain poorly understood. Using radiocarbon analysis of phospholipid fatty acids (PLFAs) and potential carbon pools, the abundance and carbon sources of the active, sediment-associated, in situ bacterial communities inhabiting shallow aquifers (<30 m) at two sites in Araihazar, Bangladesh, were investigated. At both sites, sedimentary organic carbon (SOC) Δ(14)C signatures of -631 ± 54‰ (n = 12) were significantly depleted relative to dissolved inorganic carbon (DIC) of +24 ± 30‰ and dissolved organic carbon (DOC) of -230 ± 100‰. Sediment-associated PLFA Δ(14)C signatures (n = 10) at Site F (-167‰ to +20‰) and Site B (-163‰ to +21‰) were highly consistent and indicated utilization of carbon sources younger than the SOC, likely from the DOC pool. Sediment-associated PLFA Δ(14)C signatures were consistent with previously determined Δ(14)C signatures of microbial DNA sampled from groundwater at Site F indicating that the carbon source for these two components of the subsurface microbial community is consistent and is temporally stable over the two years between studies. These results demonstrate that the utilization of relatively young carbon sources by the subsurface microbial community occurs at sites with varying hydrology. Further they indicate that these young carbon sources drive the metabolism of the more abundant sediment-associated microbial communities that are presumably more capable of Fe reduction and associated release of As. This implies that an introduction of younger carbon to as of yet unaffected sediments (such as those comprising the deeper Pleistocene aquifer) could stimulate microbial communities and result in arsenic release.

Effects of seasonal anoxia on the distribution of phosphorus fractions in the surface sediments of southeastern Arabian Sea shelf

NASA Astrophysics Data System (ADS)

Sudheesh, V.; Movitha, M.; Hatha, A. A. Mohamed; Renjith, K. R.; Resmi, P.; Rahiman, Mujeeb; Nair, S. M.

2017-11-01

The seasonal upwelling along the southeastern Arabian Sea (SEAS) brings cold, nutrient-rich low oxygen subsurface water to the continental shelf. The subsurface oxygen deficiency due to upwelling is severe in some years, the intensity of which could profoundly influence the nutrient cycling along the SEAS. Herein, we studied the effect of seasonal anoxia on fractionation of phosphorus during the peak upwelling period of August 2013. Abundance of five fractions of phosphorus (P), namely exchangeable or loosely sorbed P (Pads), iron-bound P (PFe), authigenic P (Paut), detrital apatite plus other inorganic P (Pdet) and organic P (Porg), in surface sediments of SEAS shelf has been studied using a sequential extraction procedure (SEDEX) to examine their distributions and sources. Total P (TP) concentrations ranged from 209 to 1081 μg g-1 with an average of 508 ± 256 μg g-1. Among the five P fractions, the authigenic P was the dominant species, representing about 60% of TP. The relative abundance of P fractions was in the order: Paut>Pdet>Porg>PFe> Pads. Multivariate analyses revealed that the P fractions were primarily associated with the organic constituents and fine sediments. The hypoxic bottom condition associated with summer monsoon upwelling significantly reduced the concentrations of PFe, Pads and Porg in the surface sediments. The enhanced release of organic bound and iron oxides bound P under low oxygen condition was evident from the enhanced C/P and N/P ratios and lower C/N ratio in the sediments. The intense biomineralization of organic matter and reduction of Fe-Mn oxides due to the periodic anoxia resulted in the transformations of their associated P fractions and enhanced accumulation as authigenic calcium phosphate mineral.

Modeling of depth to base of Last Glacial Maximum and seafloor sediment thickness for the California State Waters Map Series, eastern Santa Barbara Channel, California

USGS Publications Warehouse

Wong, Florence L.; Phillips, Eleyne L.; Johnson, Samuel Y.; Sliter, Ray W.

2012-01-01

Models of the depth to the base of Last Glacial Maximum and sediment thickness over the base of Last Glacial Maximum for the eastern Santa Barbara Channel are a key part of the maps of shallow subsurface geology and structure for offshore Refugio to Hueneme Canyon, California, in the California State Waters Map Series. A satisfactory interpolation of the two datasets that accounted for regional geologic structure was developed using geographic information systems modeling and graphics software tools. Regional sediment volumes were determined from the model. Source data files suitable for geographic information systems mapping applications are provided.

Episodic sediment-discharge events in Cascade Springs, southern Black Hills, South Dakota

USGS Publications Warehouse

Hayes, Timothy Scott

1999-01-01

Cascade Springs is a group of artesian springs in the southern Black Hills, South Dakota, with collective flow of about 19.6 cubic feet per second. Beginning on February 28, 1992, a large discharge of red suspended sediment was observed from two of the six known discharge points. Similar events during 1906-07 and 1969 were documented by local residents and newspaper accounts. Mineralogic and grain-size analyses were performed to identify probable subsurface sources of the sediment. Geochemical modeling was performed to evaluate the geochemical evolution of water discharged from Cascade Springs. Interpretations of results provide a perspective on the role of artesian springs in the regional geohydrologic framework. X-ray diffraction mineralogic analyses of the clay fraction of the suspended sediment were compared to analyses of clay-fraction samples taken from nine geologic units at and stratigraphically below the spring-discharge points. Ongoing development of a subsurface breccia pipe(s) in the upper Minnelusa Formation and/or Opeche Shale was identified as a likely source of the suspended sediment; thus, exposed breccia pipes in lower Hell Canyon were examined. Upper Minnelusa Formation breccia pipes in lower Hell Canyon occur in clusters similar to the discrete discharge points of Cascade Springs. Grain-size analyses showed that breccia masses lack clay fractions and have coarser distributions than the wall rocks, which indicates that the red, fine-grained fractions have been carried out as suspended sediment. These findings support the hypothesis that many breccia pipes were formed as throats of abandoned artesian springs. Geochemical modeling was used to test whether geochemical evolution of ground water is consistent with this hypothesis. The evolution of water at Cascade Springs could not be suitably simulated using only upgradient water from the Minnelusa aquifer. A suitable model involved dissolution of anhydrite accompanied by dedolomitization in the upper Minnelusa Formation, which is caused by upward leakage of relatively fresh water from the Madison aquifer. The anhydrite dissolution and dedolomitization account for the net removal of minerals that would lead to breccia pipe formation by gravitational collapse. Breccia pipes in the lower Minnelusa Formation are uncommon; however, networks of interconnected breccia layers and breccia dikes are common. These networks, along with vertical fractures and faults, are likely pathways for transmitting upward leakage from the Madison aquifer. It is concluded that suspended sediment discharged at Cascade Springs probably results from episodic collapse brecciation that is caused by subsurface dissolution of anhydrite beds and cements of the upper Minnelusa Formation, accompanied by replacement of dolomite by calcite. It is further concluded that many breccia pipes probably are the throats of artesian springs that have been abandoned and exposed by erosion. The locations of artesian spring-discharge points probably have been shifting outwards from the center of the Black Hills uplift, essentially keeping pace with regional erosion over geologic time. Thus, artesian springflow probably is a factor in controlling water levels in the Madison and Minnelusa aquifers, with hydraulic head declining over geologic time, in response to development of new discharge points. Development of breccia pipes as throats of artesian springs would greatly enhance vertical hydraulic conductivity in the immediate vicinity of spring-discharge points. Horizontal hydraulic conductivity in the Minnelusa Formation also may be enhanced by dissolution processes related to upward leakage from the Madison aquifer. Potential processes could include dissolution resulting from leakage in the vicinity of breccia pipes that are abandoned spring throats, active spring discharge, development of subsurface breccias with no visible surface expression or spring discharge, as well as general areal leakage