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Sample records for selective reflection spectroscopy

  1. Hyperfine dipole-dipole broadening of selective reflection spectroscopy at the gas-solid interface

    NASA Astrophysics Data System (ADS)

    Meng, Tengfei; Ji, Zhonghua; Zhao, Yanting; Xiao, Liantuan; Jia, Suotang

    2016-09-01

    We theoretically and experimentally investigate hyperfine dipole-dipole broadening in the selective reflection (SR) spectroscopy at the gas-solid interface with the atomic density of 1014-1015 cm-3. The two-level SR theory considering pump beam and dipole-dipole interaction between excited-state atom and ground-state atom is presented. The numerical simulation of the SR spectrum is in agreement with experimental results. The reduction of spectral width is observed by introducing a pump beam which is an effective technique to improve the resolution of spectroscopy. We analyze the dependence of dipole-dipole broadening on atomic density and pump beam power. This study is helpful for the description of the SR spectroscopy at the gas-solid interface where the Doppler broadening is comparable with dipole-dipole broadening.

  2. Science Experimenter: Reflectance Spectroscopy.

    ERIC Educational Resources Information Center

    Mims, Forrest M., III

    1991-01-01

    Provides construction details for a simple reflectometer that can be utilized for the observational technique known as reflectance spectroscopy. Includes background discussion, applications, calibrating techniques, and typical results. (JJK)

  3. Selective reflection spectroscopy of a vapour at a calcium fluoride interface

    NASA Astrophysics Data System (ADS)

    Passerat de Silans, T.; Laliotis, A.; Romanelli, M.; Chaves de Souza Segundo, P.; Maurin, I.; Bloch, D.; Ducloy, M.; Sarkisyan, A.; Sarkisyan, D.

    Fluoride materials exhibit surface resonances located in the thermal infrared. This makes them interesting to search for a fundamental temperature dependence of the atom-surface interaction, originating in the near-field thermal emissivity of the surface. Preliminary selective reflection experiments performed on a special Cs vapour cell that includes a CaF{2} interface show a temperature dependence, yet to be analyzed.

  4. Selective reflection spectroscopy at the interface between a calcium fluoride window and Cs vapour

    NASA Astrophysics Data System (ADS)

    Laliotis, A.; Maurin, I.; Fichet, M.; Bloch, D.; Ducloy, M.; Balasanyan, N.; Sarkisyan, A.; Sarkisyan, D.

    2008-03-01

    A special vapour cell has been built, that allows the measurement of the atom-surface van der Waals interaction exerted by a CaF2 window at the interface with Cs vapour. Mechanical and thermal fragility of fluoride windows make common designs of vapour cells impractical, so that we have developed an all-sapphire sealed cell with an internal CaF2 window. Although some impurities have remained when filling up the prototype cell, leading to line broadening and a shift, the selective reflection spectrum of the Cs D1 line (894 nm) makes apparent the weak van der Waals surface interaction. The uncertainties introduced by the effects of these impurities in the van der Waals measurement are nearly eliminated when comparing the selective reflection signal at the CaF2 interface of interest and at a sapphire window of the same cell. The ratio of the interactions respectively exerted by a sapphire interface and a CaF2 interface is found to be 0.55±0.25, in good agreement with the theoretical evaluation of ˜0.67.

  5. Soil organic carbon content estimation with laboratory-based visible-near-infrared reflectance spectroscopy: feature selection.

    PubMed

    Shi, Tiezhu; Chen, Yiyun; Liu, Huizeng; Wang, Junjie; Wu, Guofeng

    2014-01-01

    This study, with Yixing (Jiangsu Province, China) and Honghu (Hubei Province, China) as study areas, aimed to compare the successive projection algorithm (SPA) and the genetic algorithm (GA) in spectral feature selection for estimating soil organic carbon (SOC) contents with visible-near-infrared (Vis-NIR) reflectance spectroscopy and further to assess whether the spectral features selected from one site could be applied to another site. The SOC content and Vis-NIR reflectance spectra of soil samples were measured in the laboratory. Savitzky-Golay smoothing and log10(1/R) (R is reflectance) were used for spectral preprocessing. The reflectance spectra were resampled using different spacing intervals ranging from 2 to 10 nm. Then, SPA and GA were conducted for selecting the spectral features of SOC. Partial least square regression (PLSR) with full-spectrum PLSR and the spectral features selected by SPA (SPA-PLSR) and GA (GA-PLSR) were calibrated and validated using independent datasets, respectively. Moreover, the spectral features selected from one study area were applied to another area. Study results showed that, for the two study areas, the SPA-PLSR and GA-PLSR improved estimation accuracies and reduced spectral variables compared with the full spectrum PLSR in estimating SOC contents; GA-PLSR obtained better estimation results than SPA-PLSR, whereas SPA was simpler than GA, and the spectral features selected from Yixing could be well applied to Honghu, but not the reverse. These results indicated that the SPA and GA could reduce the spectral variables and improve the performance of PLSR model and that GA performed better than SPA in estimating SOC contents. However, SPA is simpler and time-saving compared with GA in selecting the spectral features of SOC. The spectral features selected from one dataset could be applied to a target dataset when the dataset contains sufficient information adequately describing the variability of samples of the target dataset.

  6. Electronic and optical properties of selected polymers studied by reflection electron energy loss spectroscopy

    NASA Astrophysics Data System (ADS)

    Tahir, Dahlang; Tougaard, Sven

    2012-03-01

    We have determined the electronic and optical properties of six polymers: Polymethyl-methacrylate (PMMA), polyethylene (PE), polyvinyl chloride (PVC), polyester (PET), polypyrrole (PPY), and polyamide (PA6) for energy losses from 0 to 70 eV by analysis of reflection electron energy-loss spectroscopy (REELS) spectra. We found that the surface was easily damaged by the incident electron beam, in particular for energies above 500 eV. The damage results in new peaks in the bandgap region and the polymers become metallic. Great care was exerted to determine experimental conditions under which these effects are minimized. The REELS spectra were corrected for multiple inelastically scattered electrons with the QUASES-XS-REELS software to determine the effective inelastic-scattering cross sections. From these cross sections, we found that the band gaps for PMMA, PE, PVC, PET, PPY, and PA6 are 5.0 eV, 7.5 eV, 7.0 eV, 3.0 eV, 3.5 eV, and 5.1 eV, respectively. Quantitative analysis of the experimental cross sections was carried out by using the QUEELS-ɛ(k,ω)-REELS software to determine the dielectric function and optical properties. This is done by comparing the experimental REELS inelastic electron-scattering cross-section with a simulated cross section in which the only input is Im(-1/ɛ). The dielectric function is expressed as a sum of oscillators and the oscillator parameters are determined. Good agreement between the experimental and theoretical cross section is achieved for all polymers. From Im(-1/ɛ), the real and imaginary parts of ɛ (ω), the refractive index, and the extinction coefficient were determined for all polymers in the energy range ћω = 0 to 70 eV. An oscillator is clearly observed for PPY, PET, and PA6 at ˜ 6.7 eV, which corresponds to the π plasmon. This oscillator is not found for PMMA, PE, and PVC. A set of oscillators in the 20-30 eV energy range corresponding to the σ+π plasmon is found for all polymers.

  7. Selectively reflective transparent sheets

    NASA Astrophysics Data System (ADS)

    Waché, Rémi; Florescu, Marian; Sweeney, Stephen J.; Clowes, Steven K.

    2015-08-01

    We investigate the possibility to selectively reflect certain wavelengths while maintaining the optical properties on other spectral ranges. This is of particular interest for transparent materials, which for specific applications may require high reflectivity at pre-determined frequencies. Although there exist currently techniques such as coatings to produce selective reflection, this work focuses on new approaches for mass production of polyethylene sheets which incorporate either additives or surface patterning for selective reflection between 8 to 13 μ m. Typical additives used to produce a greenhouse effect in plastics include particles such as clays, silica or hydroxide materials. However, the absorption of thermal radiation is less efficient than the decrease of emissivity as it can be compared with the inclusion of Lambertian materials. Photonic band gap engineering by the periodic structuring of metamaterials is known in nature for producing the vivid bright colors in certain organisms via strong wavelength-selective reflection. Research to artificially engineer such structures has mainly focused on wavelengths in the visible and near infrared. However few studies to date have been carried out to investigate the properties of metastructures in the mid infrared range even though the patterning of microstructure is easier to achieve. We present preliminary results on the diffuse reflectivity using FDTD simulations and analyze the technical feasibility of these approaches.

  8. Reflectance spectroscopy for soil analysis

    USDA-ARS?s Scientific Manuscript database

    Over the last three decades or more, researchers have estimated soil properties using visible and near infrared (VNIR) diffuse reflectance spectroscopy (DRS), with varying results. This presentation reviews the history and state-of –the art of VNIR-DRS, including relative estimation accuracy for var...

  9. Instrument independent diffuse reflectance spectroscopy.

    PubMed

    Yu, Bing; Fu, Henry L; Ramanujam, Nirmala

    2011-01-01

    Diffuse reflectance spectroscopy with a fiber optic probe is a powerful tool for quantitative tissue characterization and disease diagnosis. Significant systematic errors can arise in the measured reflectance spectra and thus in the derived tissue physiological and morphological parameters due to real-time instrument fluctuations. We demonstrate a novel fiber optic probe with real-time, self-calibration capability that can be used for UV-visible diffuse reflectance spectroscopy in biological tissue in clinical settings. The probe is tested in a number of synthetic liquid phantoms over a wide range of tissue optical properties for significant variations in source intensity fluctuations caused by instrument warm up and day-to-day drift. While the accuracy for extraction of absorber concentrations is comparable to that achieved with the traditional calibration (with a reflectance standard), the accuracy for extraction of reduced scattering coefficients is significantly improved with the self-calibration probe compared to traditional calibration. This technology could be used to achieve instrument-independent diffuse reflectance spectroscopy in vivo and obviate the need for instrument warm up and post∕premeasurement calibration, thus saving up to an hour of precious clinical time.

  10. Instrument independent diffuse reflectance spectroscopy

    PubMed Central

    Yu, Bing; Fu, Henry L.; Ramanujam, Nirmala

    2011-01-01

    Diffuse reflectance spectroscopy with a fiber optic probe is a powerful tool for quantitative tissue characterization and disease diagnosis. Significant systematic errors can arise in the measured reflectance spectra and thus in the derived tissue physiological and morphological parameters due to real-time instrument fluctuations. We demonstrate a novel fiber optic probe with real-time, self-calibration capability that can be used for UV-visible diffuse reflectance spectroscopy in biological tissue in clinical settings. The probe is tested in a number of synthetic liquid phantoms over a wide range of tissue optical properties for significant variations in source intensity fluctuations caused by instrument warm up and day-to-day drift. While the accuracy for extraction of absorber concentrations is comparable to that achieved with the traditional calibration (with a reflectance standard), the accuracy for extraction of reduced scattering coefficients is significantly improved with the self-calibration probe compared to traditional calibration. This technology could be used to achieve instrument-independent diffuse reflectance spectroscopy in vivo and obviate the need for instrument warm up and post∕premeasurement calibration, thus saving up to an hour of precious clinical time. PMID:21280897

  11. Cartilage analysis by reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Laun, T.; Muenzer, M.; Wenzel, U.; Princz, S.; Hessling, M.

    2015-07-01

    A cartilage bioreactor with analytical functions for cartilage quality monitoring is being developed. For determining cartilage composition, reflection spectroscopy in the visible (VIS) and near infrared (NIR) spectral region is evaluated. Main goal is the determination of the most abundant cartilage compounds water, collagen I and collagen II. Therefore VIS and NIR reflection spectra of different cartilage samples of cow, pig and lamb are recorded. Due to missing analytical instrumentation for identifying the cartilage composition of these samples, typical literature concentration values are used for the development of chemometric models. In spite of these limitations the chemometric models provide good cross correlation results for the prediction of collagen I and II and water concentration based on the visible and the NIR reflection spectra.

  12. Waveband selection of reagent-free determination for thalassemia screening indicators using Fourier transform infrared spectroscopy with attenuated total reflection.

    PubMed

    Long, Xiaoli; Liu, Guisong; Pan, Tao; Chen, Jiemei

    2014-08-01

    A reagent-free determination method for the thalassemia screening indicators hemoglobin (Hb), mean corpuscular Hb (MCH), and mean corpuscular volume (MCV) was developed based on Fourier transform infrared spectrometers equipped with an attenuated total reflection accessory. A random and stability-dependent rigorous process of calibration, prediction, and validation was conducted. Appropriate wavebands were selected using the improved moving window partial least squares method with stability and equivalence. The obtained optimal wavebands were 1722 to 1504 cm⁻¹ for Hb, 1653 to 901 cm⁻¹ for MCH, and 1562 to 964 cm⁻¹ for MCV. A model set equivalent to the optimal model was proposed for each indicator; the public waveband of Hb equivalent wavebands was 1717 to 1510 cm⁻¹, and the public equivalent waveband for MCH and MCV was 1562 to 901 cm⁻¹. All selected wavebands were within the MIR fingerprint region and achieved high validation effects. The sensitivity and specificity were 100.0% and 96.9% for the optimal wavebands and 100.0% and 95.3% for the equivalent wavebands, respectively. Thus, the spectral prediction was highly accurate for determining negative and positive for thalassemia screening. This technique is rapid and simple in comparison with conventional methods and is a promising tool for thalassemia screening in large populations.

  13. [In situ diffuse reflectance FTIR spectroscopy study of the selective catalytic reduction reaction of NO over Ag/SAPO-34 catalysis].

    PubMed

    Zhang, Ping; Wang, Le-fu; Xu, Jian-chang

    2003-02-01

    An in situ diffuse reflectance FTIR spectroscopy (DRIFTS) study of the selective catalytic reduction (SCR) of NO with propene in the presence of excess O2 was carried out over Ag/SAPO-34 catalyst. The SCR reaction was investigated at temperatures from 573 to 773 K, and the role of oxygen in the NO reduction process was determined by comparing experiments using an initial reaction mixture containing oxygen and without oxygen. The results show that both NO and propene are easily activated in oxygen. Furthermore, the presence of oxygen is necessary to form organo-NOx adsorbed species. Based on these experiments, a reaction mechanism is proposed that NO, propene and oxygen react to form organo-nitro and organo-nitrito adsorbed species as key intermediates, and then these intermediates decompose to nitrogen.

  14. In situ infrared reflection and transmission absorption spectroscopy study of surface reactions in selective chemical-vapor deposition of tungsten using WF6 and SiH4

    NASA Astrophysics Data System (ADS)

    Kobayashi, Nobuyoshi; Nakamura, Yoshitaka; Goto, Hidekazu; Homma, Yoshio

    1993-05-01

    The adsorption of tungsten hexafluoride (WF6) and monosilane (SiH4) in selective chemical-vapor deposition (CVD) of tungsten (W) is investigated in situ using Fourier-transform infrared reflection and transmission absorption spectroscopy (FTIR RAS and TMS). The selectivity for W growth is found to originate from the dissociation of SiH4 on a W surface. That is, SiH4 dissociates on a W surface to form Si-containing adsorbed species when the W surface is exposed to SiH4 at temperatures higher than 110 °C, whereas SiH4 does not dissociate on a SiO2 surface. On the other hand, when W and SiO2 surfaces are exposed to WF6 at temperatures from 20 to 300 °C, no adsorbed species are observed by FTIR RAS. However, WF6 can easily react with the Si-containing adsorbed species on a W surface to form W and byproduct gases of SiHF3 and SiF4. The main surface reaction of selective W CVD can be expressed as WF6+2SiH4=W+2SiHF3+3H2. These experimental results support the selective W-CVD mechanism previously proposed, which shows that dissociation of SiH4 and not the dissociation of WF6 has a central role in this process.

  15. Reflections/Selected Readings.

    ERIC Educational Resources Information Center

    Cook, Gillian; Gorman, Arlene; Junco, Carol; Martinez, Miriam; Perez, Bertha; Torres, Azucena; Tschoepe, Mary

    1998-01-01

    Offers reflections on lingering issues raised in this themed issue on the "Gardendale Family": maintaining the integrity of the family; issues of time; curriculum standards; and effects on the rest of the school. Offers a bibliography of works considering the global concerns which prompted the formation of the Gardendale Family. (SR)

  16. Selected techniques in radioecology: Model development and comparison for internal dosimetry of rainbow trout (Oncorhynchus mykiss) and feasibiltiy assessment of reflectance spectroscopy use as a tool in phytoremediation

    NASA Astrophysics Data System (ADS)

    Martinez, Nicole

    Factors (DCFs) for whole body as well as selected organs of O. mykiss were computed using Monte Carlo modeling, and combined with the empirical models for predicting activity concentration, to estimate dose rates and ultimately determine cumulative radiation dose (microGy) to selected organs after several half-lives of either 131I or 99Mo. The different computational models provided similar results, especially for organs that were both the source and target of radiation (less than 30% difference between estimated doses). Part 2 considers the use of reflectance spectroscopy as a remediation tool through its potential to determine plant stress from metal contaminants. The studies in Part 2 further investigate the potential use of reflectance spectroscopy as a method for assessing metal stress in plants. In the first study, Arabidopsis thaliana plants were treated twice weekly in a laboratory setting with varying levels (0 mM, 0.5 mM, or 5 mM) of cesium chloride (CsCl) solution, and reflectance spectra were collected every week for three weeks using an ASD FieldSpec Pro spectroradiometer with both a contact probe and a field of view probe at 36.8 and 66.7 cm above the plant. As metal stress is known to mimic drought stress, plants were harvested each week after spectra collection for determination of relative water content and chlorophyll content. A visual assessment of the plants was also conducted using point observations on a uniform grid of 81 points. Two-way ANOVAs were performed on selected vegetation indices (VI) to determine the significance of the effects of treatment level and length of treatment. Linear regression was used to relate the most appropriate vegetation indices to the aforementioned endpoints and to compare results provided by the three different spectra collection techniques. One-way ANOVAs were performed on selected VI at each time point to determine which, if any, indices offered a significant prediction of the overall extent of Cs toxicity. Of the

  17. High spectral resolution reflectance spectroscopy of minerals

    USGS Publications Warehouse

    Clark, R.N.; King, T.V.V.; Klejwa, M.; Swayze, G.A.; Vergo, N.

    1990-01-01

    The reflectance spectra of minerals are studied as a function of spectral resolution in the range from 0.2 to 3.0 ??m. Selected absorption bands were studied at resolving powers (??/????) as high as 2240. At resolving powers of approximately 1000, many OH-bearing minerals show diagnostic sharp absorptions at the resolution limit. At low resolution, some minerals may not be distinguishable, but as the resolution is increased, most can be easily identified. As the resolution is increased, many minerals show fine structure, particularly in the OH-stretching overtone region near 1.4 ??m. The fine structure can enhance the ability to discriminate between minerals, and in some cases the fine structure can be used to determine elemental composition. The study shows that high-resolution reflectance spectroscopy of minerals may prove to be a very important tool in the laboratory, in the field using field-portable spectrometers, from aircraft, and from satellites looking at Earth or other planetary surfaces. -from Authors

  18. Technical note: validation of a model for online classification of US Select beef carcasses for longissimus tenderness using visible and near-infrared reflectance spectroscopy.

    PubMed

    Shackelford, S D; Wheeler, T L; Koohmaraie, M

    2012-03-01

    The present experiment was conducted to provide a validation of a previously developed model for online classification of US Select carcasses for LM tenderness based on visible and near-infrared (VISNIR) spectroscopy and to determine if the accuracy of VISNIR-based tenderness classification could be enhanced by making measurements after postmortem aging. Spectroscopy was conducted online, during carcass grading, at a large-scale commercial fed beef-processing facility, and the strip loin was obtained from the left side of US Select carcasses (n = 467). Slice shear force (SSF) was measured on fresh steaks at 2 and 14 d postmortem. Online VISNIR tenderness classes differed in mean SSF values at both 2 d (29.4 vs. 33.6 kg) and 14 d (18.0 vs. 21.2 kg) postmortem (P < 10(-7)). Online VISNIR tenderness classes differed in both the percentage of carcasses with LM SSF values greater than 40 kg at 2 d postmortem (5.1 vs. 21.0%; P < 10(-6)) and the percentage of carcasses with LM SSF values greater than 25 kg at 14 d postmortem (6.8 vs. 23.2%; P < 10(-5)). Whereas 15.0% of the carcasses sampled for this experiment had LM SSF values greater than 25 kg at 14 d postmortem, only 6.8% of the carcasses classified as tender by VISNIR had LM SSF values greater than 25 kg. All the carcasses sampled that had LM SSF values greater than 35 kg at 14 d postmortem were accurately classified as tough by VISNIR. Before measurement of SSF on d 14, VISNIR spectroscopy was conducted on the SSF steak. Tenderness classes based on d 14 VISNIR spectra differed both in mean SSF value at 14 d postmortem (17.7 vs. 21.6 kg; P < 10(-11)) and the percentage of carcasses with LM SSF values greater than 25 kg at 14 d postmortem (7.3 vs. 22.7%; P < 10(-5)). These data support our previous work showing that VISNIR spectroscopy can be used to classify US Select carcasses noninvasively for LM tenderness, and the results establish that this technology could also be applied to aged US Select strip loins. This

  19. Soft tissue differentiation by diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Zam, Azhar; Stelzle, Florian; Nkenke, Emeka; Tangermann-Gerk, Katja; Schmidt, Michael; Adler, Werner; Douplik, Alexandre

    2009-07-01

    Laser surgery gives the possibility to work remotely which leads to high precision, little trauma and high level sterility. However these advantages are coming with the lack of haptic feedback during the laser ablation of tissue. Therefore additional means are required to control tissue-specific ablation during laser surgery supporting the surgeon regardless of experience and skills. Diffuse Reflectance Spectroscopy provides a straightforward and simple approach for optical tissue differentiation. We measured diffuse reflectance from four various tissue types ex vivo. We applied Linear Discriminant Analysis (LDA) to differentiate the four tissue types and computed the area under the ROC curve (AUC). Special emphasis was taken on the identification of nerve as the most crucial tissue for maxillofacial surgery. The results show a promise for differentiating soft tissues as guidance for tissue-specific laser surgery by means of the diffuse reflectance.

  20. Diffuse reflectance spectroscopy of liver tissue

    NASA Astrophysics Data System (ADS)

    Reistad, Nina; Nilsson, Jan; Vilhelmsson Timmermand, Oskar; Sturesson, Christian; Andersson-Engels, Stefan

    2015-06-01

    Diffuse reflectance spectroscopy (DRS) with a fiber-optic contact probe is a cost-effective, rapid, and non-invasive optical method used to extract diagnosis information of tissue. By combining commercially available VIS- and NIR-spectrometers with various fiber-optic contact-probes, we have access to the full wavelength range from around 400 to 1600 nm. Using this flexible and portable spectroscopy system, we have acquired ex-vivo DRS-spectra from murine, porcine, and human liver tissue. For extracting the tissue optical properties from the measured spectra, we have employed and compared predictions from two models for light propagation in tissue, diffusion theory model (DT) and Monte Carlo simulations (MC). The focus in this work is on the capacity of this DRS-technique in discriminating metastatic tumor tissue from normal liver tissue as well as in assessing and characterizing damage to non-malignant liver tissue induced by preoperative chemotherapy for colorectal liver metastases.

  1. High resolution selective reflection spectroscopy as a probe of long-range surface interaction : measurement of the surface van der Waals attraction exerted on excited Cs atoms

    NASA Astrophysics Data System (ADS)

    Chevrollier, Martine; Fichet, Michèle; Oria, Marcos; Rahmat, Gabriel; Bloch, Daniel; Ducloy, Martial

    1992-04-01

    Selective reflection spectroscopy at an interface with a low-density resonant vapor, especially when combined with a frequency modulation technique, is a high-resolution Doppler-free tool for probing atoms interacting with a surface. We analyze different types of relevant surface interaction, emphasizing the spectral consequences of a van der Waals surface attraction associated to a z^{-3} potential dependence (z: distance to the wall). We present detailed results of two series of experiments at a Cs vapor/dielectric window interface on the 6S{1/2}-6P{3/2} (λ = 852 nm) resonance line and on the 6S{1/2}-7P second resonance line (λ = 455 nm and 459 nm). Lineshape analysis at various pressures consistently shows that a van der Waals-type surface attraction has to be considered to interpret strong lineshape distortions and resonance shift. The attractive strengths are found to be equal respectively to ≈ 2 kHz μm^3 and ≈ 20 kHz μm^3, independently of the considered hyperfine component, within the experimental accuracy. It yields also typical parameters of pressure broadening and shift, which are shown to originate in collisional processes, at densities where the medium is opaque. Theoretical expectations for the VW strength are discussed on the basis of the results of atomic theory. The predicted values are smaller, by a typical factor of 2, than those deduced from the experiments. The validity of the theory, when applied to a dielectric interface, is discussed and seems questionable when the frequency of virtual atomic transitions involved in the van der Waals attraction potential lies in the dielectric window absorption range. La spectroscopie de réflexion sélective à l'interface d'une vapeur résonnante de faible densité, combinée à une technique de modulation de fréquence, permet de sonder à haute résolution et sans effet Doppler des atomes en interaction avec une surface. On analyse différents types d'interaction de surface envisageables, en

  2. Adsorbate Azimuthal Orientation from Reflectance Anisotropy Spectroscopy

    NASA Astrophysics Data System (ADS)

    Frederick, B. G.; Power, J. R.; Cole, R. J.; Perry, C. C.; Chen, Q.; Haq, S.; Bertrams, Th.; Richardson, N. V.; Weightman, P.

    1998-05-01

    We have determined the azimuthal orientation of an adsorbate on a metal surface from an intramolecular-transition-derived feature in reflectance anisotropy spectroscopy (RAS). Adsorption of 9-anthracene carboxylic acid onto p\\(2×1\\)O/Cu110 led to an ordered structure with a strong (2%), derivativelike feature at 4.5 eV. Fresnel theory predicts the measured intensity, functional behavior, and sense of the RAS signal for the molecule aligned along [110]. IR measurements confirm that the molecular plane is perpendicular to the surface and STM measurements support the azimuthal orientation. We reassign the sense of the clean Cu(110) surface RA spectrum.

  3. Zero bias anomaly in Andreev reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Gifford, J. A.; Zhao, G. J.; Li, B. C.; Zhang, J.; Kim, D. R.; Chen, T. Y.

    2016-10-01

    Zero bias anomalies have been observed in point contact Andreev reflection spectroscopy using conventional superconductors, and they cannot be suppressed by a highly spin-polarized current. By systematically varying the size of the point contact, the anomalies are found to be evolved from conductance dips outside the superconducting gap. These anomalies, which depend on the size of the interface, are not intrinsic to the superconductors but due to a large resistance change when the contact region is driven to normal by an Oersted field.

  4. Determination of trans Fat in Selected Fast Food Products and Hydrogenated Fats of India Using Attenuated Total Reflection Fourier Transform Infrared (ATR-FTIR) Spectroscopy.

    PubMed

    Khan, Mohd Umar; Hassan, Mohammad Fahimul; Rauf, Abdul

    2017-01-01

    This paper reports the application of a simple and rapid method for the determination of trans fatty acid (TFA) content in some of the selected Indian fast food products and hydrogenated fats using Fourier transform infrared (FTIR) spectroscopy in conjunction with second derivative procedure. FTIR spectroscopy has been successfully applied to trans measurement using the absorbance bands at or near 966 cm(-1) in the FTIR spectra. It was found from the analysis that TFA content of fast food product was ranging from 1.57% to 3.83% of the total fat while for hydrogenated fats, comparatively large quantity of TFA was detected in the range of 3.31% to 4.73%. Since GC-FID is most widely used method for the determination of fatty acid (FA) composition, this method was used for the sake of comparison. Value of regression coefficient was found very close to one (0.99503) with standard deviation of 0.10247 showing a good agreement between GC-FID and proposed ATR-FTIR method.

  5. Light distribution modulated diffuse reflectance spectroscopy

    PubMed Central

    Huang, Pin-Yuan; Chien, Chun-Yu; Sheu, Chia-Rong; Chen, Yu-Wen; Tseng, Sheng-Hao

    2016-01-01

    Typically, a diffuse reflectance spectroscopy (DRS) system employing a continuous wave light source would need to acquire diffuse reflectances measured at multiple source-detector separations for determining the absorption and reduced scattering coefficients of turbid samples. This results in a multi-fiber probe structure and an indefinite probing depth. Here we present a novel DRS method that can utilize a few diffuse reflectances measured at one source-detector separation for recovering the optical properties of samples. The core of innovation is a liquid crystal (LC) cell whose scattering property can be modulated by the bias voltage. By placing the LC cell between the light source and the sample, the spatial distribution of light in the sample can be varied as the scattering property of the LC cell modulated by the bias voltage, and this would induce intensity variation of the collected diffuse reflectance. From a series of Monte Carlo simulations and phantom measurements, we found that this new light distribution modulated DRS (LDM DRS) system was capable of accurately recover the absorption and scattering coefficients of turbid samples and its probing depth only varied by less than 3% over the full bias voltage variation range. Our results suggest that this LDM DRS platform could be developed to various low-cost, efficient, and compact systems for in-vivo superficial tissue investigation. PMID:27375931

  6. Light distribution modulated diffuse reflectance spectroscopy.

    PubMed

    Huang, Pin-Yuan; Chien, Chun-Yu; Sheu, Chia-Rong; Chen, Yu-Wen; Tseng, Sheng-Hao

    2016-06-01

    Typically, a diffuse reflectance spectroscopy (DRS) system employing a continuous wave light source would need to acquire diffuse reflectances measured at multiple source-detector separations for determining the absorption and reduced scattering coefficients of turbid samples. This results in a multi-fiber probe structure and an indefinite probing depth. Here we present a novel DRS method that can utilize a few diffuse reflectances measured at one source-detector separation for recovering the optical properties of samples. The core of innovation is a liquid crystal (LC) cell whose scattering property can be modulated by the bias voltage. By placing the LC cell between the light source and the sample, the spatial distribution of light in the sample can be varied as the scattering property of the LC cell modulated by the bias voltage, and this would induce intensity variation of the collected diffuse reflectance. From a series of Monte Carlo simulations and phantom measurements, we found that this new light distribution modulated DRS (LDM DRS) system was capable of accurately recover the absorption and scattering coefficients of turbid samples and its probing depth only varied by less than 3% over the full bias voltage variation range. Our results suggest that this LDM DRS platform could be developed to various low-cost, efficient, and compact systems for in-vivo superficial tissue investigation.

  7. Estimating soil zinc concentrations using reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Sun, Weichao; Zhang, Xia

    2017-06-01

    Soil contamination by heavy metals has been an increasingly severe threat to nature environment and human health. Efficiently investigation of contamination status is essential to soil protection and remediation. Visible and near-infrared reflectance spectroscopy (VNIRS) has been regarded as an alternative for monitoring soil contamination by heavy metals. Generally, the entire VNIR spectral bands are employed to estimate heavy metal concentration, which lacks interpretability and requires much calculation. In this study, 74 soil samples were collected from Hunan Province, China and their reflectance spectra were used to estimate zinc (Zn) concentration in soil. Organic matter and clay minerals have strong adsorption for Zn in soil. Spectral bands associated with organic matter and clay minerals were used for estimation with genetic algorithm based partial least square regression (GA-PLSR). The entire VNIR spectral bands, the bands associated with organic matter and the bands associated with clay minerals were incorporated as comparisons. Root mean square error of prediction, residual prediction deviation, and coefficient of determination (R2) for the model developed using combined bands of organic matter and clay minerals were 329.65 mg kg-1, 1.96 and 0.73, which is better than 341.88 mg kg-1, 1.89 and 0.71 for the entire VNIR spectral bands, 492.65 mg kg-1, 1.31 and 0.40 for the organic matter, and 430.26 mg kg-1, 1.50 and 0.54 for the clay minerals. Additionally, in consideration of atmospheric water vapor absorption in field spectra measurement, combined bands of organic matter and absorption around 2200 nm were used for estimation and achieved high prediction accuracy with R2 reached 0.640. The results indicate huge potential of soil reflectance spectroscopy in estimating Zn concentrations in soil.

  8. Optical Reflection Spectroscopy of GEO Objects

    NASA Technical Reports Server (NTRS)

    Seitzer, Patrick; Cardona, Tammaso; Lederer, Susan M.; Cowardin, Heather; Abercromby, Kira J.; Barker, Edwin S.; Bedard, Donald

    2013-01-01

    We report on optical reflection spectroscopy of geosynchronous (GEO) objects in the US Space Surveillance Network (SSN) catalog. These observations were obtained using imaging spectrographs on the 6.5-m Magellan telescopes at the Las Campanas Observatory in Chile. Our goal is to determine the composition of these objects by comparing these spectral observations with ground-based laboratory measurements of spacecraft materials. The observations are all low resolution (1 nm after smoothing) obtained through a 5 arcsecond wide slit and using a grism as the dispersing element. The spectral range covered was from 450 nm to 800 nm. All spectra were flux calibrated using observations of standard stars with the exact same instrumental setup. An effort was made to obtain all observations within a limited range of topocentric phase angle, although the solar incident angle is unknown due to the lack of any knowledge of the attitude of the observed surface at the time of observation.

  9. Reflectance spectroscopy characterization of space debris

    NASA Astrophysics Data System (ADS)

    Vananti, A.; Schildknecht, T.; Krag, H.

    2017-05-01

    When characterizing the space debris environment one important point is the identification of the physical properties of the space debris objects. Reflectance spectroscopy is a possible technique to study the surface material of these objects with observations from the ground. In this work the results collected from spectroscopy observations of space debris in orbit are presented. The observations were performed at the 1-m ESA Space Debris Telescope (ESASDT) in Tenerife equipped with a spectrograph in the 450-960 nm wavelength range. A preliminary classification using three different categories purely based on the shape and appearance of the spectra was proposed. Two debris objects with high AMR could be successfully associated with materials analyzed in the laboratory. The results show that the two debris objects are probably pieces of Kapton MLI with 'gold' and 'silver' coating, respectively. Color indices were extracted from the spectroscopic measurements. For high AMR objects the colors seem to be consistent with the proposed classification in three categories. The B-R and R-I laboratory measurements of 'gold' and 'silver' MLI taken from the literature are comparable with the obtained results.

  10. Reflectance spectroscopy of organic compounds: 1. Alkanes

    USGS Publications Warehouse

    Clark, R.N.; Curchin, J.M.; Hoefen, T.M.; Swayze, G.A.

    2009-01-01

    Reflectance spectra of the organic compounds comprising the alkane series are presented from the ultraviolet to midinfrared, 0.35 to 15.5 /??m. Alkanes are hydrocarbon molecules containing only single carbon-carbon bonds, and are found naturally on the Earth and in the atmospheres of the giant planets and Saturn's moon, Titan. This paper presents the spectral properties of the alkanes as the first in a series of papers to build a spectral database of organic compounds for use in remote sensing studies. Applications range from mapping the environment on the Earth, to the search for organic molecules and life in the solar system and throughout the. universe. We show that the spectral reflectance properties of organic compounds are rich, with major diagnostic spectral features throughout the spectral range studied. Little to no spectral change was observed as a function of temperature and only small shifts and changes in the width of absorption bands were observed between liquids and solids, making remote detection of spectral properties throughout the solar system simpler. Some high molecular weight organic compounds contain single-bonded carbon chains and have spectra similar to alkanes even ' when they fall into other families. Small spectral differences are often present allowing discrimination among some compounds, further illustrating the need to catalog spectral properties for accurate remote sensing identification with spectroscopy.

  11. Diagnosis of Breast Cancer Using Fluorescence and Reflectance Spectroscopy

    DTIC Science & Technology

    2004-09-01

    breast cancer based on fluorescence and diffuse reflectance spectroscopy . Our first objective include was to characterize the fluorescence properties of...device based on fluorescence and diffuse reflectance spectroscopy has the advantage of being fast, quantitative, and minimally invasive, and has the...Fluorescence and diffuse reflectance spectroscopy in the ultraviolet-visible wavelength range were made with a multi-separation probe at three illumination

  12. Reflectance anisotropy spectroscopy of magnetite (110) surfaces

    NASA Astrophysics Data System (ADS)

    Fleischer, K.; Verre, R.; Mauit, O.; Sofin, R. G. S.; Farrell, L.; Byrne, C.; Smith, C. M.; McGilp, J. F.; Shvets, I. V.

    2014-05-01

    Reflectance anisotropy spectroscopy (RAS) has been used to measure the optical anisotropies of bulk and thin-film Fe3O4(110) surfaces. The spectra indicate that small shifts in energy of the optical transitions, associated with anisotropic strain or electric field gradients caused by the (110) surface termination or a native oxide layer, are responsible for the strong signal observed. The RAS response was then measured as a function of temperature. A distinct change in the RAS line-shape amplitude was observed in the spectral range from 0.8 to 1.6 eV for temperatures below the Verwey transition of the crystal. Finally, thin-film magnetite was grown by molecular beam epitaxy on MgO(110) substrates. Changes in the RAS spectra were found for different film thickness, suggesting that RAS can be used to monitor the growth of magnetite (110) films in situ. The thickness dependence of the RAS is discussed in terms of various models for the origin of the RAS signal.

  13. High spectral resolution reflectance spectroscopy of minerals

    NASA Technical Reports Server (NTRS)

    Clark, Roger N.; King, Trude V. V.; Klejwa, Matthew; Swayze, Gregg A.; Vergo, Norma

    1990-01-01

    The reflectance spectra of minerals are studied as a function of spectral resolution in the range from 0.2 to 3.0 microns. Selected absorption bands were studied at resolving powers as high as 2240. At resolving powers of approximately 1000, many OH-bearing minerals show diagnostic sharp absorptions at the resolution limit. At low resolution, some minerals may not be distinguishable, but as the resolution is increased, most can be easily identified. As the resolution is increased, many minerals show fine structure, particularly in the OH-stretching overtone region near 1.4 micron. The fine structure can enhance the ability to discriminate between minerals, and in some cases the fine structure can be used to determine elemental composition.

  14. High spectral resolution reflectance spectroscopy of minerals

    NASA Technical Reports Server (NTRS)

    Clark, Roger N.; King, Trude V. V.; Klejwa, Matthew; Swayze, Gregg A.; Vergo, Norma

    1990-01-01

    The reflectance spectra of minerals are studied as a function of spectral resolution in the range from 0.2 to 3.0 microns. Selected absorption bands were studied at resolving powers as high as 2240. At resolving powers of approximately 1000, many OH-bearing minerals show diagnostic sharp absorptions at the resolution limit. At low resolution, some minerals may not be distinguishable, but as the resolution is increased, most can be easily identified. As the resolution is increased, many minerals show fine structure, particularly in the OH-stretching overtone region near 1.4 micron. The fine structure can enhance the ability to discriminate between minerals, and in some cases the fine structure can be used to determine elemental composition.

  15. Specular Reflection and Diffuse Reflectance Spectroscopy of Soils

    USDA-ARS?s Scientific Manuscript database

    Studies on the occurrence and effects of specular reflection in mid-infrared spectra of soils have shown that distortions due to specular reflection occur for both organic (humic acid) and non-organic fractions (carbonates, silica, ashed fraction of soil). The results demonstrated explain why the s...

  16. Attenuated total reflection far-ultraviolet spectroscopy

    NASA Astrophysics Data System (ADS)

    Ozaki, Yukihiro; Morisawa, Yusuke; Goto, Takeyoshi; Tanabe, Ichiro

    2016-09-01

    Recently, far-ultraviolet (FUV) spectroscopy of solid and liquid states has been a matter of keen interest because it provides new possibilities for studying electronic structures and transitions of almost all kinds of molecules. It has also great potential for a variety of applications from quantitative and qualitative analysis of aqueous solutions to environmental and geographical analyses. This review describes the state-of- the-art of FUV spectroscopy; an introduction to FUV spectroscopy, the development of FUV spectrometers, investigations on electronic transitions and structure, its various applications, and future prospects.

  17. Mechanism of the selective catalytic oxidation of slip ammonia over Ru-modified Ce-Zr complexes determined by in situ diffuse reflectance infrared Fourier transform spectroscopy.

    PubMed

    Chen, Wanmiao; Ma, Yongpeng; Qu, Zan; Liu, Qinghang; Huang, Wenjun; Hu, Xiaofang; Yan, Naiqiang

    2014-10-21

    The slip ammonia from selective catalytic reduction (SCR) of NOx in coal-fired flue gas can result in deterioration of the utilities or even the environmental issues. To achieve selective catalytic oxidation (SCO) of slip ammonia, Ru-modified Ce-Zr solid solution catalysts were prepared and evaluated under various conditions. It was found that the Ru/Ce(0.6)Zr(0.4)O2(polyvinylpyrrolidone (PVP)) catalyst displayed significant catalytic activity and the slip ammonia was almost completely removed with the coexistence of NOx and SO2. Interestingly, the effect of SO2 on NH3 oxidation was bifacial, and the N2 selectivity of the resulting products was as high as 100% in the presence of SO2 and NH3. The mechanism of the SCO of NH3 over Ru/Ce(0.6)Zr(0.4)O2(PVP) was studied using various techniques, and the results showed that NH3 oxidation follows an internal SCR (iSCR) mechanism. The adsorbed ammonia was first activated and reacted with lattice oxygen atoms to form an -HNO intermediate. Then, the -HNO mainly reacted with atomic oxygen from O2 to form NO. Meanwhile, the formed NO interacted with -NH2 to N2 with N2O as the byproduct, but the presence of SO2 can effectively inhibit the production of N2O.

  18. Analysis of reflectance characteristics of selected plants

    NASA Astrophysics Data System (ADS)

    Kaszczuk, Miroslawa; Mierczyk, Zygmunt; Zygmunt, Marek; Piotrowski, Wieslaw; Mierczyk, Jadwiga

    2011-06-01

    The paper presents reflectance characteristics of plants. The objects of the research were the selected plants, taking the various levels of organization and structure into consideration, as well as the state of plant health and growth. Reflectance spectrum was analyzed in the range of wavelengths from 0,2 to 2,5 μm. The values of reflectance for three wavelengths (λ1=850 nm, λ2=905 nm, λ3=1550 nm) were analyzed with the particular emphasis. The sample tests were performed immediately after biological material taking and in the several 24-hour time intervals. The time intervals enabled the process of plants wilting and drying. The reflectance measurements were repeated until the moment of plant complete dried out. All measurements were performed with the use of the spectrometer Lambda 900 (Perkin Elmer) equipped with the 150 mm integrating sphere PELA1001 dedicated for the measurements of the hemispherical reflectance both of diffuse and specular type. On the basis of the obtained results one calculated the values of signal ratios for the three selected wavelengths: 850/1550nm, 905/1550nm, and 850/905nm. The collected spectra and reflectance characteristics enabled the analyses of both results similarities and differences, which enabled the determination of the reflectance changes tendency associated with the typical processes occurring in plants. The analyses of plants reflectance characteristics were made for the use of the laser system for identification of terrain elements and their physico-chemical properties.

  19. Light Reflectance Spectroscopy to Detect Positive Surgical Margins on Prostate Cancer Specimens.

    PubMed

    Morgan, Monica S C; Lay, Aaron H; Wang, Xinlong; Kapur, Payal; Ozayar, Asim; Sayah, Maryam; Zeng, Li; Liu, Hanli; Roehrborn, Claus G; Cadeddu, Jeffrey A

    2016-02-01

    Intraoperative frozen section analysis is not routinely performed to determine positive surgical margins at radical prostatectomy due to time requirements and unproven clinical usefulness. Light reflectance spectroscopy, which measures light intensity reflected or backscattered from tissues, can be applied to differentiate malignant from benign tissue. We used a novel light reflectance spectroscopy probe to evaluate positive surgical margins on ex vivo radical prostatectomy specimens and correlate its findings with pathological examination. Patients with intermediate to high risk disease undergoing radical prostatectomy were enrolled. Light reflectance spectroscopy was performed on suspected malignant and benign prostate capsule immediately following organ extraction. Each light reflectance spectroscopy at 530 to 830 nm was analyzed and correlated with pathological results. A regression model and forward sequential selection algorithm were developed for optimal feature selection. Eighty percent of light reflectance spectroscopy data were selected to train a logistic regression model, which was evaluated by the remaining 20% data. This was repeated 5 times to calculate averaged sensitivity, specificity and accuracy. Light reflectance spectroscopy analysis was performed on 17 ex vivo prostate specimens, on which a total of 11 histologically positive and 22 negative surgical margins were measured. Two select features from 700 to 830 nm were identified as unique to malignant tissue. Cross-validation when performing the predictive model showed that the optical probe predicted positive surgical margins with 85% sensitivity, 86% specificity, 86% accuracy and an AUC of 0.95. Light reflectance spectroscopy can identify positive surgical margins accurately in fresh ex vivo radical prostatectomy specimens. Further study is required to determine whether such analysis may be used in real time to improve surgical decision making and decrease positive surgical margin rates

  20. Fiber-remote reflectance spectroscopy with an optimized diffuse reflectance sensor system

    SciTech Connect

    Driver, R.D.; Grim, K.P.; Dewey, G.; Brubaker, M.L.

    1995-12-31

    A diffuse reflectance spectroscopy system is described which can operate in a contact and non-contact mode on powders, slurries and other diffusely scattering materials. Diffuse reflectance spectra are presented for a number of samples including common household materials. A comparison is made of the probe with a Bio-Rad diffuse reflectance accessory. Second derivative spectra are shown of a calibration mixture of polymer additives. The use of the diffuse reflectance system for non-destructive tablet hardness measurements is discussed. Sensor multiplexing for diffuse reflectance spectroscopy, is reviewed.

  1. Fiber-remote reflectance spectroscopy with an optimized diffuse reflectance sensor system

    NASA Astrophysics Data System (ADS)

    Driver, Richard D.; Grim, Kirk P.; Dewey, G.; Brubaker, M. L.

    1995-01-01

    A diffuse reflectance spectroscopy system is described which can operate in a contact and non- contact mode on powders, slurries and other diffusely scattering materials. Diffuse reflectance spectra are presented for a number of samples including common household materials. A comparison is made of the probe with a Bio-Rad diffuse reflectance accessory. Second derivative spectra are shown of a calibration mixture of polymer additives. The use of the diffuse reflectance system for non-destructive tablet hardness measurements is discussed. Sensor multiplexing for diffuse reflectance spectroscopy is reviewed.

  2. Characterization of Degradation Using Reflectance Spectroscopy (Postprint)

    DTIC Science & Technology

    2013-08-01

    could be performed in field. Fourier transform infrared (FTIR) devices have been developed with in field inspection capabilities [4]. Spectroscopy is a...the data to be transformed to a linear model. In these cases, all the techniques for linear models may be applied such as PCA and PLS [6, 7]. These...number of molecules of that oscillator type. This is known as the Lorentz model in dispersion analysis 1597 This article is copyrighted as indicated in

  3. Apollo 17 Soil Characterization for Reflectance Spectroscopy

    NASA Technical Reports Server (NTRS)

    Taylor, L. A.; Pieters, C.; Patchen, A.; Morris, R. V.; Keller, L. P.; Wentworth, S.; McKay, D. S.

    1999-01-01

    It is the fine fractions that dominate the observed spectral signatures of bulk lunar soil, and the next to the smallest size fractions are the most similar to the overall properties of the bulk soil. Thus, our Lunar Soil Characterization Consortium has concentrated on understanding the inter-relations of compositional, mineralogical, and optical properties of the <45-micron size fraction and its component sizes (20-44 micron, 10-20 micron, and <10 micron size fractions). To be able to generalize our results beyond the particular sample set studied, it is necessary to quantitatively identify the observed effects of space weathering and evaluate the processes involved. For this, it is necessary to know the chemistry of each size fraction, modal abundances of each phase, average compositions of the minerals and glasses, I(sub s)/FeO values, reflectance spectra, and the physical makeup of the individual particles and their patinas. This characterization includes the important dissection of the pyroxene minerals into four separate populations, with data on both modes and average chemical compositions. Armed with such data, it should be possible to effectively isolate spectral effects of space weathering from spectral properties related to mineral and glass chemistry. Four mare soils from the Apollo 17 site were selected for characterization based upon similarities in bulk composition and their contrasting maturities, ranging from immature to submature to mature. The methodology of our characterization has been discussed previously. Results of the Apollo 17 mare soils, outlined herein, are being prepared for publication in MAPS. As shown, with decreasing grain size, the agglutinitic (impact) glass content profoundly increases. This is the most impressive change for the mare soils. In several soils we have examined, there is an over two-fold increase in the agglutinitic glass contents between the 90-150- micron and the 10-20-micron size fractions. Accompanying this

  4. Apollo 17 Soil Characterization for Reflectance Spectroscopy

    NASA Astrophysics Data System (ADS)

    Taylor, L. A.; Pieters, C.; Patchen, A.; Morris, R. V.; Keller, L. P.; Wentworth, S.; McKay, D. S.

    1999-01-01

    It is the fine fractions that dominate the observed spectral signatures of bulk lunar soil, and the next to the smallest size fractions are the most similar to the overall properties of the bulk soil. Thus, our Lunar Soil Characterization Consortium has concentrated on understanding the inter-relations of compositional, mineralogical, and optical properties of the <45-micron size fraction and its component sizes (20-44 micron, 10-20 micron, and <10 micron size fractions). To be able to generalize our results beyond the particular sample set studied, it is necessary to quantitatively identify the observed effects of space weathering and evaluate the processes involved. For this, it is necessary to know the chemistry of each size fraction, modal abundances of each phase, average compositions of the minerals and glasses, Is/FeO values, reflectance spectra, and the physical makeup of the individual particles and their patinas. This characterization includes the important dissection of the pyroxene minerals into four separate populations, with data on both modes and average chemical compositions. Armed with such data, it should be possible to effectively isolate spectral effects of space weathering from spectral properties related to mineral and glass chemistry. Four mare soils from the Apollo 17 site were selected for characterization based upon similarities in bulk composition and their contrasting maturities, ranging from immature to submature to mature. The methodology of our characterization has been discussed previously. Results of the Apollo 17 mare soils, outlined herein, are being prepared for publication in MAPS. As shown, with decreasing grain size, the agglutinitic (impact) glass content profoundly increases. This is the most impressive change for the mare soils. In several soils we have examined, there is an over two-fold increase in the agglutinitic glass contents between the 90-150- micron and the 10-20-micron size fractions. Accompanying this increase in

  5. Apollo 17 Soil Characterization for Reflectance Spectroscopy

    NASA Technical Reports Server (NTRS)

    Taylor, L. A.; Pieters, C.; Patchen, A.; Morris, R. V.; Keller, L. P.; Wentworth, S.; McKay, D. S.

    1999-01-01

    It is the fine fractions that dominate the observed spectral signatures of bulk lunar soil, and the next to the smallest size fractions are the most similar to the overall properties of the bulk soil. Thus, our Lunar Soil Characterization Consortium has concentrated on understanding the inter-relations of compositional, mineralogical, and optical properties of the <45-micron size fraction and its component sizes (20-44 micron, 10-20 micron, and <10 micron size fractions). To be able to generalize our results beyond the particular sample set studied, it is necessary to quantitatively identify the observed effects of space weathering and evaluate the processes involved. For this, it is necessary to know the chemistry of each size fraction, modal abundances of each phase, average compositions of the minerals and glasses, I(sub s)/FeO values, reflectance spectra, and the physical makeup of the individual particles and their patinas. This characterization includes the important dissection of the pyroxene minerals into four separate populations, with data on both modes and average chemical compositions. Armed with such data, it should be possible to effectively isolate spectral effects of space weathering from spectral properties related to mineral and glass chemistry. Four mare soils from the Apollo 17 site were selected for characterization based upon similarities in bulk composition and their contrasting maturities, ranging from immature to submature to mature. The methodology of our characterization has been discussed previously. Results of the Apollo 17 mare soils, outlined herein, are being prepared for publication in MAPS. As shown, with decreasing grain size, the agglutinitic (impact) glass content profoundly increases. This is the most impressive change for the mare soils. In several soils we have examined, there is an over two-fold increase in the agglutinitic glass contents between the 90-150- micron and the 10-20-micron size fractions. Accompanying this

  6. Does Spectral Format Matter in Diffuse Reflection Spectroscopy

    USDA-ARS?s Scientific Manuscript database

    Near- and more recently, mid-infrared diffuse reflectance spectroscopy have come to be extensively used to determine the composition of products ranging from forages to drugs. In these methods, spectra are generally collected as (Reflectance or R) and transformed to log (1/R) according to the Beer-...

  7. Estimating soil quality indicators with diffuse reflectance spectroscopy

    USDA-ARS?s Scientific Manuscript database

    Rapid estimation of soil quality is needed for determining and mapping soil variability in site-specific management. One technology that can fulfill this need is diffuse reflectance spectroscopy, which measures light reflected from the soil in the visible and near infrared wavelength bands. Reflecta...

  8. Reflection Spectroscopy With The FT-IR Microscope

    NASA Astrophysics Data System (ADS)

    Wihlborg, William T.; Reffner, John A.; Strand, Scott W.; Wasacz, Frank M.

    1989-12-01

    The FT-IR microscope is a versatile sampling accessory used to record IR spectra in either transmittance or reflectance modes and capable of obtaining data from microscopic sampling areas. Because the FT-IR microscope simplifies the collection of reflectance data it has renewed interest in reflectance spectroscopy. Moreover, the ability to see the specific sample and to obtain spectra from small areas makes it possible to differentiate the mode of the reflection data. Reflections can be specular, diffuse or reflection-absorption modes. These modes are not independent, but the sample and its surface geometry can cause one mode to dominate all others. With polished grains or single crystal faces, specular reflection is the dominate mode. Thin films on metallic reflecting substrates make reflection-absorption the major reflection mode. Diffuse reflection dominates when the surface is very rough or fine irregular particles are analyzed. Since the sample can be seen with the microscope, the reflection mode can be predicted by direct observation of the sample's surface. In this work, examples of reflection spectral measurements are presented to illustrate the versatility of the FT-IR microscope. Of particular interest is the first report of quantitative analysis of a copolymer using specular reflectance measurements obtained with the FT-IR microscope. In this analysis, the Kramers-Kroenig transformation was used to obtain extinction (k) values. The k values derived from specular reflection are quantitative agreement with absorbance values measured by transmission.

  9. Combined theory of reflectance and emittance spectroscopy

    NASA Technical Reports Server (NTRS)

    Hapke, Bruce

    1995-01-01

    The theory in which either or both reflected sunlight and thermally emitted radiation contribute to the power received by a detector viewing a particulate medium, such as a powder in the laboratory or a planetary regolith, is considered theoretically. This theory is of considerable interest for the interpretation of data from field or spacecraft instruments that are sensitive to the near-infrared region of the spectrum, such as NIMS (near-infrared mapping spectrometer) and VIMS (visual and infrared mapping spectrometer), as well as thermal infrared detectors.

  10. Optimization of diffuse reflectance infrared spectroscopy accessories

    SciTech Connect

    Hirschfeld, T.

    1986-11-01

    The value of diffuse reflectance as an infrared or near-infrared spectroscopic sampling procedure has been limited by the low efficiency of accessories designed for it. In terms of signal-to-noise ratio, these average 2-6% for integrating spheres and 10-12% for various ellipsoidal mirror arrangements. Much better performances, up to 37% efficiency, can be obtained by optimizing a concentric confocal ellipsoidal mirror arrangement by using a very large central opening in the amular collector mirror, and adapting the throughput of the detector to the geometry of the collected beam.

  11. Assessment of skin flap viability using visible diffuse reflectance spectroscopy and auto-fluorescence spectroscopy

    NASA Astrophysics Data System (ADS)

    Zhu, Caigang; Chen, Shuo; Chui, Christopher Hoe-Kong; Liu, Quan

    2012-12-01

    The accurate assessment of skin flap viability is vitally important in reconstructive surgery. Early identification of vascular compromise increases the change of successful flap salvage. The ability to determine tissue viability intraoperatively is also extremely useful when the reconstructive surgeon must decide how to inset the flap and whether any tissue must be discarded. Visible diffuse reflectance and auto-fluorescence spectroscopy, which yield different sets of biochemical information, have not been used in the characterization of skin flap viability simultaneously to our best knowledge. We performed both diffuse reflectance and fluorescence measurements on a reverse MacFarlane rat dorsal skin flap model to identify the additional value of auto-fluorescence spectroscopy to the assessment of flap viability. Our result suggests that auto-fluorescence spectroscopy appears to be more sensitive to early biochemical changes in a failed flap than diffuse reflectance spectroscopy, which could be a valuable complement to diffuse reflectance spectroscopy for the assessment of flap viability.

  12. [Application of near infrared reflectance spectroscopy to predict meat chemical compositions: a review].

    PubMed

    Tao, Lin-Li; Yang, Xiu-Juan; Deng, Jun-Ming; Zhang, Xi

    2013-11-01

    In contrast to conventional methods for the determination of meat chemical composition, near infrared reflectance spectroscopy enables rapid, simple, secure and simultaneous assessment of numerous meat properties. The present review focuses on the use of near infrared reflectance spectroscopy to predict meat chemical compositions. The potential of near infrared reflectance spectroscopy to predict crude protein, intramuscular fat, fatty acid, moisture, ash, myoglobin and collagen of beef, pork, chicken and lamb is reviewed. This paper discusses existing questions and reasons in the current research. According to the published results, although published results vary considerably, they suggest that near-infrared reflectance spectroscopy shows a great potential to replace the expensive and time-consuming chemical analysis of meat composition. In particular, under commercial conditions where simultaneous measurements of different chemical components are required, near infrared reflectance spectroscopy is expected to be the method of choice. The majority of studies selected feature-related wavelengths using principal components regression, developed the calibration model using partial least squares and modified partial least squares, and estimated the prediction accuracy by means of cross-validation using the same sample set previously used for the calibration. Meat fatty acid composition predicted by near-infrared spectroscopy and non-destructive prediction and visualization of chemical composition in meat using near-infrared hyperspectral imaging and multivariate regression are the hot studying field now. On the other hand, near infrared reflectance spectroscopy shows great difference for predicting different attributes of meat quality which are closely related to the selection of calibration sample set, preprocessing of near-infrared spectroscopy and modeling approach. Sample preparation also has an important effect on the reliability of NIR prediction; in particular

  13. Accessing deep optical properties of skin using diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Koenig, Anne; Roig, Blandine; Le Digabel, Jimmy; Josse, Gwendal; Dinten, Jean-Marc

    2015-07-01

    Diffuse reflectance spectroscopy characterizes composition and structure of tissues by determining their scattering and absorption properties. We have developed in our laboratory a low-cost spatially resolved diffuse reflectance spectroscopy instrument. We present in this study some results showing how to adapt this technology on multi-layered tissues. First of all, a method enabling determination of scattering and absorption properties of multi-layered phantoms is described; the adaptation of the initial methodology to focus on deep layers is especially detailed. Then some preliminary results obtained on a panel of volunteer's redness faces are presented.

  14. Passive optical element with selective angular reflection

    SciTech Connect

    Tremblay, C.; Rheault, F.; Boulay, R.; Tremblay, R.

    1987-02-01

    This work is related to the development of passive selective transmission materials that will contribute to regularize the solar thermal gain. We propose an original solution to the problem of seasonal control of energetic input into buildings through windows. A passive optical element with selective angular reflection is used to solve this problem. This optical element allows sunlight to enter windows during the fall and winter, whereas, owing to the different astronomical path of the sun, it stops and rejects direct sunlight by means of the optical effect called total internal reflection (TIR) during the central spring-Summer period. The purpose of this paper is to describe the optical element in some detail, to develop the principal design equations, and give the results of the optimization of optical and geometrical parameters.

  15. Passive optical element with selective angular reflection.

    PubMed

    Tremblay, C; Rheault, F; Boulay, R; Tremblay, R

    1987-02-01

    This work is related to the development of passive selective transmission materials that will contribute to regularize the solar thermal gain. We propose an original solution to the problem of seasonal control of energetic input into buildings through windows. A passive optical element with selective angular reflection is used to solve this problem. This optical element allows sunlight to enter windows during the fall and winter, whereas, owing to the different astronomical path of the sun, it stops and rejects direct sunlight by means of the optical effect called total internal reflection (TIR) during the central spring-summer period. The purpose of this paper is to describe the optical element in some detail, to develop the principal design equations, and give the results of the optimization of optical and geometrical parameters.

  16. Does the spectral format matter in diffuse reflection spectroscopy?

    PubMed

    Reeves, James B

    2009-06-01

    Near-infrared, and more recently, mid-infrared diffuse reflection spectroscopy (more commonly and erroneously called reflectance spectroscopy) have come to be extensively used to determine the composition of products ranging from forages and drugs to soils. In these methods, spectra are generally collected as reflectance or R and transformed to log (1/reflectance). However, some near-infrared researchers do not transform the data, but use the data directly as reflectance. As it is generally held that procedures such as partial least squares regression do not work well with nonlinear data and the log (1/reflectance) transformation is held to be a best effort at linearization for near-infrared diffuse reflection spectral data, the question arises as to why then does not everyone transform the data? The objective of this work was to investigate this question using near-infrared and mid-infrared spectra in various formats. Calibrations were developed using spectral data from forages in several formats: reflectance, log (1/reflectance), non-background corrected single beam spectra, interferograms, and Kubelka-Munk transformed data. Calibrations were developed using both non-pretreated spectra and using data pretreatments such as derivatives. Results showed that calibrations using partial least squares regression did not require any specific data format. Accurate calibrations were developed for fiber, digestibility, and protein measures in forages using any of the aforementioned spectral formats including non-background-corrected single beam spectra and even interferograms. While calibrations could be developed using any of the formats, results indicated that those using Kubelka-Munk and especially interferograms did not perform as well as the others, although they were still quite good. In conclusion, results using forage spectra indicated that accurate and equivalent calibrations can be developed using diffuse reflectance data, with (reflectance) or without background

  17. Analytical study of spacecraft deposition contamination by internal reflection spectroscopy

    NASA Technical Reports Server (NTRS)

    Mookherji, T.

    1972-01-01

    Infrared absorption spectra of ten individual contaminant materials and four binary mixtures of these have been studied using the internal reflection spectroscopy technique. The effect of ultraviolet radiation on these contaminants has also been studied. It has been observed that all siloxanes, silanes, and esters are drastically affected by ultraviolet irradiation. In most cases polymerization and tar formation results.

  18. Soil phosphorus and potassium estimation by reflectance spectroscopy

    USDA-ARS?s Scientific Manuscript database

    Visible and near infrared (VNIR) diffuse reflectance spectroscopy has potential in site-specific measurement of soil properties. However, previous studies have reported VNIR estimates of plant available soil phosphorus (P) and potassium (K) to be of variable accuracy. In this study, we used a databa...

  19. Estimating a soil quality index with VNIR reflectance spectroscopy

    USDA-ARS?s Scientific Manuscript database

    Sensor-based approaches to assessment and quantification of soil quality are important to facilitate cost-effective, site-specific soil management. The objective of this research was to evaluate the ability of visible, near-infrared (VNIR) diffuse reflectance spectroscopy to estimate multiple soil q...

  20. Factors affecting soil phosphorus and potassium estimation by reflectance spectroscopy

    USDA-ARS?s Scientific Manuscript database

    Visible and near infrared (VNIR) diffuse reflectance spectroscopy has potential in site-specific measurement of soil properties. However, previous studies have reported VNIR estimates of plant available soil phosphorus (P) and potassium (K) to be of variable accuracy. In this study, we used a databa...

  1. Instrumentation for Reflectance Spectroscopy and Microspectroscopy with Application to Astrobiology

    NASA Technical Reports Server (NTRS)

    Mouroulis, Pantazis; Blaney, Diana L.; Green, Robert O.

    2008-01-01

    We present instrument concepts for in-situ reflectance spectroscopy over a spatial resolution range from several meters to tens of micrometers. These have been adapted to the low mass and power requirements of rover or similar platforms. Described are a miniaturized imaging spectrometer for rover mast, a combined mast and arm point spectrometer, and an imaging microspectrometer for the rover arm.

  2. Optical fiber sensing based on reflection laser spectroscopy.

    PubMed

    Gagliardi, Gianluca; Salza, Mario; Ferraro, Pietro; Chehura, Edmond; Tatam, Ralph P; Gangopadhyay, Tarun K; Ballard, Nicholas; Paz-Soldan, Daniel; Barnes, Jack A; Loock, Hans-Peter; Lam, Timothy T-Y; Chow, Jong H; De Natale, Paolo

    2010-01-01

    An overview on high-resolution and fast interrogation of optical-fiber sensors relying on laser reflection spectroscopy is given. Fiber Bragg-gratings (FBGs) and FBG resonators built in fibers of different types are used for strain, temperature and acceleration measurements using heterodyne-detection and optical frequency-locking techniques. Silica fiber-ring cavities are used for chemical sensing based on evanescent-wave spectroscopy. Various arrangements for signal recovery and noise reduction, as an extension of most typical spectroscopic techniques, are illustrated and results on detection performances are presented.

  3. [Identification of pearl powder using microscopic infrared reflectance spectroscopy].

    PubMed

    Zhang, Xuan; Hu, Chao; Yan, Yan; Yang, Hai-Feng; Li, Jun-Fang; Bai, Hua; Xi, Guang-Cheng; Liao, Jie

    2014-09-01

    Pearl is a precious ornament and traditional Chinese medicine, which application history in China is more than 2000 years. It is well known that the chemical ingredients of shell and pearl are very similar, which all of them including calcium carbonate and various amino acids. Generally, shell powders also can be used as medicine; however, its medicinal value is much lower than that of pearl powders. Due to the feature similarity between pearl powders and shell powders, the distinguishment of them by detecting chemical composition and morphology is very difficult. It should be noted that shell powders have been often posing as pearl powders in markets, which seriously infringes the interests of consumers. Identification of pearl powder was investigated by microscopic infrared reflectance spectroscopy, and pearl powder as well as shell powder was calcined at different temperatures for different time before infrared reflectance spectroscopy analysis. The experimental results indicated that when calcined at 400 °C for 30 minutes under atmospheric pressure, aragonite in pearl powder partly transformed into calcite, while aragonite in shell powder completely transformed into calcite. At the same time, the difference in phase transition between the pearl powders 'and shell powders can be easily detected by using the microscopic infrared reflectance spectroscopy. Therefore, based on the difference in their phase transition process, infrared reflectance spectroscopy can be used to identify phase transformation differences between pearl powder and shell powder. It's more meaningfully that the proposed infrared reflectance spec- troscopy method was also investigated for the applicability to other common counterfeits, such as oyster shell powders and abalone shell powders, and the results show that the method can be a simple, efficiently and accurately method for identification of pearl powder.

  4. Characterisation of the Cartilage/Bone Interface Utilising Reflectance Spectroscopy

    DTIC Science & Technology

    2001-10-25

    implantation (ACI). Keywords-Cartilage, reflection spectroscopy, ultrasound , auto- logous chondrocyte implantation I. INTRODUCTION Researchers in the...of the optical parameters [3]. This method is from obvious reasons unsuit- able for clinical investigations. So is ultrasound because of the size of... ultrasound (A-scan 20 MHz, Derma- scan 3, version 3, Cortex Technology, Hadsund, Denmark). The probe was scanning over the measurement site and an image of

  5. Depth-resolved measurements with elliptically polarized reflectance spectroscopy

    PubMed Central

    Bailey, Maria J.; Sokolov, Konstantin

    2016-01-01

    The ability of elliptical polarized reflectance spectroscopy (EPRS) to detect spectroscopic alterations in tissue mimicking phantoms and in biological tissue in situ is demonstrated. It is shown that there is a linear relationship between light penetration depth and ellipticity. This dependence is used to demonstrate the feasibility of a depth-resolved spectroscopic imaging using EPRS. The advantages and drawbacks of EPRS in evaluation of biological tissue are analyzed and discussed. PMID:27446712

  6. Reflectance spectroscopy of gold nanoshells: computational predictions and experimental measurements

    NASA Astrophysics Data System (ADS)

    Lin, Alex W. H.; Lewinski, Nastassja A.; Lee, Min-Ho; Drezek, Rebekah A.

    2006-10-01

    Gold nanoshells are concentric spherical constructs that possess highly desirable optical responses in the near infrared. Gold nanoshells consist of a thin outer gold shell and a silica core and can be used for both diagnostic and therapeutic purposes by tuning the optical response through changing the core-shell ratio as well as the overall size. Although optical properties of gold nanoshells have already been well documented, the reflectance characteristics are not well understood and have not yet been elucidated by experimental measurements. Yet, in order to use gold nanoshells as an optical contrast agent for scattering-based optical methods such as reflectance spectroscopy, it is critical to characterize the reflectance behavior. With this in mind, we used a fiber-optic-based spectrometer to measure diffuse reflectance of gold nanoshell suspensions from 500 nm to 900 nm. Experimental results show that gold nanoshells cause a significant increase in the measured reflectance. Spectral features associated with scattering from large angles ( 180°) were observed at low nanoshell concentrations. Monte Carlo modeling of gold nanoshells reflectance demonstrated the efficacy of using such methods to predict diffuse reflectance. Our studies suggest that gold nanoshells are an excellent candidate as optical contrast agents and that Monte Carlo methods are a useful tool for optimizing nanoshells best suited for scattering-based optical methods.

  7. Raman and infrared spectroscopy of selected vanadates.

    PubMed

    Frost, Ray L; Erickson, Kristy L; Weier, Matt L; Carmody, Onuma

    2005-03-01

    Raman and infrared spectroscopy has been used to study the structure of selected vanadates including pascoite, huemulite, barnesite, hewettite, metahewettite, hummerite. Pascoite, rauvite and huemulite are examples of simple salts involving the decavanadates anion (V10O28)6-. Decavanadate consists of four distinct VO6 units which are reflected in Raman bands at the higher wavenumbers. The Raman spectra of these minerals are characterised by two intense bands at 991 and 965 cm(-1). Four pascoite Raman bands are observed at 991, 965, 958 and 905 cm(-1) and originate from four distinct VO6 sites. The other minerals namely barnesite, hewettite, metahewettite and hummerite have similar layered structures to the decavanadates but are based upon (V5O14)3- units. Barnesite is characterised by a single Raman band at 1010 cm(-1), whilst hummerite has Raman bands at 999 and 962 cm(-1). The absence of four distinct bands indicates the overlap of the vibrational modes from two of the VO6 sites. Metarossite is characterised by a strong band at 953 cm(-1). These bands are assigned to nu1 symmetric stretching modes of (V6O16)2- units and terminal VO3 units. In the infrared spectra of these minerals, bands are observed in the 837-860 cm(-1) and in the 803-833 cm(-1) region. In some of the Raman spectra bands are observed for pascoite, hummerite and metahewettite in similar positions. These bands are assigned to nu3 antisymmetric stretching of (V10O28)6- units or (V5O14)3- units. Because of the complexity of the spectra in the low wavenumber region assignment of bands is difficult. Bands are observed in the 404-458 cm(-1) region and are assigned to the nu2 bending modes of (V10O28)6- units or (V5O14)3- units. Raman bands are observed in the 530-620 cm(-1) region and are assigned to the nu4 bending modes of (V10O28)6- units or (V5O14)3- units. The Raman spectra of the vanadates in the low wavenumber region are complex with multiple overlapping bands which are probably due to VO

  8. Raman and infrared spectroscopy of selected vanadates

    NASA Astrophysics Data System (ADS)

    Frost, Ray L.; Erickson, Kristy L.; Weier, Matt L.; Carmody, Onuma

    2005-03-01

    Raman and infrared spectroscopy has been used to study the structure of selected vanadates including pascoite, huemulite, barnesite, hewettite, metahewettite, hummerite. Pascoite, rauvite and huemulite are examples of simple salts involving the decavanadates anion (V 10O 28) 6-. Decavanadate consists of four distinct VO 6 units which are reflected in Raman bands at the higher wavenumbers. The Raman spectra of these minerals are characterised by two intense bands at 991 and 965 cm -1. Four pascoite Raman bands are observed at 991, 965, 958 and 905 cm -1 and originate from four distinct VO 6 sites. The other minerals namely barnesite, hewettite, metahewettite and hummerite have similar layered structures to the decavanadates but are based upon (V 5O 14) 3- units. Barnesite is characterised by a single Raman band at 1010 cm -1, whilst hummerite has Raman bands at 999 and 962 cm -1. The absence of four distinct bands indicates the overlap of the vibrational modes from two of the VO 6 sites. Metarossite is characterised by a strong band at 953 cm -1. These bands are assigned to ν1 symmetric stretching modes of (V 6O 16) 2- units and terminal VO 3 units. In the infrared spectra of these minerals, bands are observed in the 837-860 cm -1 and in the 803-833 cm -1 region. In some of the Raman spectra bands are observed for pascoite, hummerite and metahewettite in similar positions. These bands are assigned to ν 3 antisymmetric stretching of (V 10O 28) 6- units or (V 5O 14) 3- units. Because of the complexity of the spectra in the low wavenumber region assignment of bands is difficult. Bands are observed in the 404-458 cm -1 region and are assigned to the ν2 bending modes of (V 10O 28) 6- units or (V 5O 14) 3- units. Raman bands are observed in the 530-620 cm -1 region and are assigned to the ν4 bending modes of (V 10O 28) 6- units or (V 5O 14) 3- units. The Raman spectra of the vanadates in the low wavenumber region are complex with multiple overlapping bands which are

  9. Reflectance spectroscopy for noninvasive evaluation of hair follicle stage

    NASA Astrophysics Data System (ADS)

    Liu, Caihua; Guan, Yue; Wang, Jianru; Zhong, Xiewei; Liu, Xiuli; Zhu, Dan

    2015-05-01

    Hair follicle offers an excellent model for systems biology and regenerative medicine. So far, the stages of hair follicle growth have been evaluated by histological examination. In this work, a noninvasive spectroscopy was proposed by measuring the diffuse reflectance of mouse skin and analyzing the melanin value. Results show that the skin diffuse reflectance was relatively high when hair follicles were at the telogen stage and at the beginning of the anagen stage, and decreased with the progression of the anagen stage. When the hair follicle entered into the catagen stage, the diffuse reflectance gradually increased. The changes in the melanin content of skin had contrary dynamics. Substages of the hair follicle cycle could be distinguished by comparing the changes in melanin value with the histological examination. This study provided a new method for noninvasive evaluation of the hair follicle stage, and should be valuable for basic and therapeutic investigations on hair regeneration.

  10. Quantitative analysis of binary polymorphs mixtures of fusidic acid by diffuse reflectance FTIR spectroscopy, diffuse reflectance FT-NIR spectroscopy, Raman spectroscopy and multivariate calibration.

    PubMed

    Guo, Canyong; Luo, Xuefang; Zhou, Xiaohua; Shi, Beijia; Wang, Juanjuan; Zhao, Jinqi; Zhang, Xiaoxia

    2017-03-10

    Vibrational spectroscopic techniques such as infrared, near-infrared and Raman spectroscopy have become popular in detecting and quantifying polymorphism of pharmaceutics since they are fast and non-destructive. This study assessed the ability of three vibrational spectroscopy combined with multivariate analysis to quantify a low-content undesired polymorph within a binary polymorphic mixture. Partial least squares (PLS) regression and support vector machine (SVM) regression were employed to build quantitative models. Fusidic acid, a steroidal antibiotic, was used as the model compound. It was found that PLS regression performed slightly better than SVM regression in all the three spectroscopic techniques. Root mean square errors of prediction (RMSEP) were ranging from 0.48% to 1.17% for diffuse reflectance FTIR spectroscopy and 1.60-1.93% for diffuse reflectance FT-NIR spectroscopy and 1.62-2.31% for Raman spectroscopy. The results indicate that diffuse reflectance FTIR spectroscopy offers significant advantages in providing accurate measurement of polymorphic content in the fusidic acid binary mixtures, while Raman spectroscopy is the least accurate technique for quantitative analysis of polymorphs.

  11. Reflective mesoscopic spectroscopy for noninvasive detection of reflective index alternations at nano-scale

    NASA Astrophysics Data System (ADS)

    Tao, Yuanhao; Ding, Zhihua

    2011-01-01

    Cancer has been one of the most serious threats to human life. However, there is no substantial improvement in overall treatment of cancer patients. One of the key reasons is the unavailability of convenient method to detect cellular alterations in ultra-early stage of carcinogenesis processes, where genetic aberrations at nano-scale have not yet resulted in histological changes. In this paper, we described an optical method based on reflective mesoscopic spectroscopy for ultra-early cancer detection. According to mesoscopic light transport theory, photons propagating in one dimension (1D) within a weakly disordered medium have the non-self-averaging effect. Reflected signal after 1D propagating is sensitive to any length scale of refractive index fluctuations due to multiple interferences of light waves travelling along 1D trajectory. The principle of mesoscopic spectroscopy for perceiving reflective index fluctuations at length scale of nanometers is introduced. A system for the measurement of reflective mesoscopic spectroscopy based on spatial-incoherence broadband source and spectrometer is established. Simulations on light propagation in cell-emulating model with controlled refractive index distribution are done by finite-difference time-domain (FDTD) approach.

  12. Catheter based mid-infrared reflectance and reflectance generated absorption spectroscopy

    DOEpatents

    Holman, Hoi-Ying N

    2013-10-29

    A method of characterizing conditions in a tissue, by (a) providing a catheter that has a light source that emits light in selected wavenumbers within the range of mid-IR spectrum; (b) directing the light from the catheter to an area of tissue at a location inside a blood vessel of a subject; (c) collecting light reflected from the location and generating a reflectance spectra; and (d) comparing the reflectance spectra to a reference spectra of normal tissue, whereby a location having an increased number of absorbance peaks at said selected wavenumbers indicates a tissue inside the blood vessel containing a physiological marker for atherosclerosis.

  13. [SPAD prediction of leave based on reflection spectroscopy].

    PubMed

    Yang, Hai-Qing; Yao, Jian-Song; He, Yong

    2009-06-01

    Handheld SPAD meter is often used to measure chlorophyll content of plant and nitrogen level for some species. For plant production automation, however, it loses its popularity due to its point-by-point checking. The authors need to monitor the growing conditions of plant remotely, instantly and nondestructively. In the test, we examined optical fiber reflection spectroscopy used to measure chlorophyll content of some plant leaves, or for their SPAD prediction. The authors picked 120 leaves randomly from our campus ground or trees, among which 70 samples were chosen as calibration set and others as verification set. Each sample was water-cleaned and air-dried. To locate each measuring point precisely when using SPAD meter and spectrometer, the authors drew a circle with a diameter of 10 mm on each leave to be measured. By comparing the spectral curves of various leaves, the authors found that the spectral band between 650-750 nm was significant for SPAD modeling since this range of spectral data of leaves with the same SPAD reading was close to each other. It was showed that leave color was an unnecessary factor for SPAD prediction by reflection spectroscopy. Besides, the authors discovered that LED's narrow spectral range used by SPAD meter should be concerned because optical fiber spectrometer has much more wide spectral range. Based on this awareness, the authors designed an adjustment factor of light to linearly rebuild spectrometer's reflective intensity so that it reached zero outside the band 650-750 nm. Moreover, leave thickness was another influential factor for SPAD prediction since the light of SPAD meter goes through the leave while the reflective spectrometer does not. First, an equation for SPAD prediction was built with uncertain parameters. Then, a standard genetic algorithm was designed with Visual Basic 6.0 for parameter optimization. As a result, the optimal reflection band was narrowed within 683.24-733.91 nm. The result showed that leave

  14. Characterization of probe contact effects on diffuse reflectance spectroscopy measurements

    NASA Astrophysics Data System (ADS)

    Reistad, Nina; Mayjonade, Mallory; Ahadi, Aylin; Andersson-Engels, Stefan

    2015-06-01

    Diffuse reflectance spectroscopy (DRS) is a rapid, non-invasive optical method widely adopted to gain diagnostic information of tissue. The most flexible approach to this method is a fiber-optic contact-probe used with a spectroscopy system. A challenge of this method is that the external pressure brought by the probe can significantly affect the tissue optical properties as well as the light coupling into the probe, and thus influence the collected DRS-spectrum. In this study we investigate and characterize the effect of probe pressure on DRS-spectra obtained with a calibrated loaded-spring system used with a fiber optic probe in the range (400 - 1600) nm. A multilayer FE-model of the indentation is developed to get a better insight of the distribution of pressure and stresses inside the skin under indentation.

  15. Anisotropic Differential Reflectance Spectroscopy of Thin GeSe

    NASA Astrophysics Data System (ADS)

    Matson, Joseph; Woods, Grace; Churchill, Hugh

    2017-01-01

    Atomically thin monochalcogenides are predicted to exhibit a two-dimensional structural phase transition. This phase transition could be useful for designing new phase change memory devices. The critical temperature is dependent on the material as well as the thickness, and is predicted to occur just above room temperature for monolayer GeSe. We used differential reflectance spectroscopy on thin samples of GeSe to measure changes in the optical anisotropy with temperature as a signature of this phase transition. We constructed an apparatus for temperature-depedendent spectroscopy of micro-scale GeSe samples, and measured anisotropic optical absorption of thin GeSe. We observed a decrease in optical anisotropy of GeSe at elevated temperatures, which may be a first indication of the continuous transition from a rectangular to a square lattice in that material. This work was supported by NSF REU Grant #EEC-1359306.

  16. Depth Profile Determination of Stratified Layers Using Internal Reflection Spectroscopy

    NASA Astrophysics Data System (ADS)

    Shick, Robert Adam

    It is the purpose of this project to develop a method to quantitatively determine depth profile information using internal reflection spectroscopy. The theory allowing depth profile information to be recovered from variable angle attenuated total reflection (VA-ATR) spectroscopy is shown for both perpendicular and parallel polarization. The major approximation is that the extinction coefficient must be small, so that the field decay due to distance and absorption are comparable. The errors invoked by these approximations are evaluated by comparison with exact optical simulations using dispersion theory. Having shown that the newly developed method is theoretically feasible, it is important to show that it is a viable technique with current instrumentation. It is shown that VA-ATR Fourier transform infrared spectroscopy is a valuable technique to recover depth profile information on the molecular level. A number of known step profiles are measured to determine the limits of applicability for this method. Thickness results obtained using the internal reflection technique are compared with thickness determination using a stylus profilometer. It is shown that the results using p-polarization are somewhat more realistic than s -polarization. The VA-ATR infrared technique was used to investigate the interaction and diffusion of poly(2,6-dimethyl-1,4 -phenylene oxide), PPO, and polystyrene, PS. Optical theory was employed to clarify the effect of the local interactions on the infrared spectra. Optical theory was also used to determine composition profiles at various times of inter -diffusion. It was observed that migration occurred between the PPO and the PS layer, even below the glass transition of the PPO. This migration proceeded linearly with time ^{1/2} which is an indication of Fickian diffusion, although the profiles had some additional non-Fickian characteristics.

  17. Depth sensitive oblique polarized reflectance spectroscopy of oral epithelial tissue

    NASA Astrophysics Data System (ADS)

    Jimenez, Maria K.; Lam, Sylvia; Poh, Catherine; Sokolov, Konstantin

    2014-05-01

    Identifying depth-dependent alterations associated with epithelial cancerous lesions can be challenging in the oral cavity where variable epithelial thicknesses and troublesome keratin growths are prominent. Spectroscopic methods with enhanced depth resolution would immensely aid in isolating optical properties associated with malignant transformation. Combining multiple beveled fibers, oblique collection geometry, and polarization gating, oblique polarized reflectance spectroscopy (OPRS) achieves depth sensitive detection. We report promising results from a clinical trial of patients with oral lesions suspected of dysplasia or carcinoma demonstrating the potential of OPRS for the analysis of morphological and architectural changes in the context of multilayer, epithelial oral tissue.

  18. Analysis of remote reflection spectroscopy to monitor plant health

    NASA Astrophysics Data System (ADS)

    Woodhouse, R.; Heeb, M.; Berry, W.; Hoshizaki, T.; Wood, M.

    1994-11-01

    Remote non-contact reflection spectroscopy is examined as a method for detecting stress in Controlled Ecological Life Support System CELSS type crops. Lettuce (Latuca Sativa L. cv. Waldmans Green) and wheat (Triticum Aestivum L. cv. Yecora Rojo) were grown hydroponically. Copper and zinc treatments provided toxic conditions. Nitrogen, phosphorous, and potassium treatments were used for deficiency conditions. Water stress was also induced in test plants. Reflectance spectra were obtained in the visible and near infrared (400nm to 2600nm) wavebands. Numerous effects of stress conditions can be observed in the collected spectra and this technique appears to have promise as a remote monitor of plant health, but significant research remains to be conducted to realize the promise.

  19. Analysis of remote reflection spectroscopy to monitor plant health.

    PubMed

    Woodhouse, R; Heeb, M; Berry, W; Hoshizaki, T; Wood, M

    1994-11-01

    Remote non-contact reflection spectroscopy is examined as a method for detecting stress in Controlled Ecological Life Support System CELSS type crops. Lettuce (Lactuca [correction of Latuca] Sativa L. cv. Waldmans Green) and wheat (Triticum Aestivum L. cv. Yecora Rojo) were grown hydroponically. Copper and zinc treatments provided toxic conditions. Nitrogen, phosphorous, and potassium treatments were used for deficiency conditions. Water stress was also induced in test plants. Reflectance spectra were obtained in the visible and near infrared (400nm to 2600nm) wavebands. Numerous effects of stress conditions can be observed in the collected spectra and this technique appears to have promise as a remote monitor of plant health, but significant research remains to be conducted to realize the promise.

  20. Hydrodynamic potential-modulated reflectance spectroscopy: theory and experiment.

    PubMed

    Wang, R L; Peter, L M; Qiu, F L; Fisher, A C

    2001-05-15

    This article describes the development and application of a new electrochemical methodology based on potential-modulated UV-vis reflectance spectroscopy (PMRS). The device configuration is based upon a thin-layer flow-through channel cell incorporating a platinum working electrode. Reagent solutions are pumped through the cell under well-defined hydrodynamic conditions and electrolyzed at the platinum working electrode. Measurements are presented for linear sweep and fixed dc potentials with a superimposed small amplitude sinusoidal potential perturbation. A UV-vis source is employed to irradiate the electrode region, and the resulting reflected signal is analyzed using a phase sensitive detector. Experimental studies using tris(4-bromophenyl) amine (TBPA) in acetonitrile are presented which quantify the relationship between the absorption spectrum and reflected light intensity as a function of the transport rate, electrolysis reactions, and the modulation frequency of the incident irradiation. The experimental results are analyzed using numerical simulations based on a finite difference strategy. These permit the quantitative prediction of the concentration distribution of reagents within the cell. A fast Fourier transform (FFT) routine was used to analyze the frequency response of the numerically predicted reflectance signal. Excellent agreement was observed between the numerical predictions and experimental observations.

  1. FUNDAMENTAL AREAS OF PHENOMENOLOGY (INCLUDING APPLICATIONS): Measurement of Refractive Index for High Reflectance Materials with Terahertz Time Domain Reflection Spectroscopy

    NASA Astrophysics Data System (ADS)

    Sun, Wen-Feng; Wang, Xin-Ke; Zhang, Yan

    2009-11-01

    A method to measure the refractive index for high reflectance materials in the terahertz range with terahertz time domain reflection spectroscopy is proposed. In this method, the THz waveforms reflected by a silicon wafer and high reflectance sample are measured respectively. The refractive index of the silicon wafer, measured with the THz time domain transmission spectroscopy, is used as a reference in the THz time domain reflective spectroscopy. Therefore, the complex refractive index of the sample can be obtained by resorting to the known reflective index of the silicon and the Fresnel law. To improve the accuracy of the phase shift, the Kramers-Kronig transform is adopted. This method is also verified by the index of the silicon in THz reflection spectroscopy. The bulk metal plates have been taken as the sample, and the experimentally obtained metallic refractive indexes are compared with the simple Drude model.

  2. Development of techniques for advanced optical contamination measurement with internal reflection spectroscopy, phase 1, volume 1

    NASA Technical Reports Server (NTRS)

    Hayes, J. D.

    1972-01-01

    The feasibility of monitoring volatile contaminants in a large space simulation chamber using techniques of internal reflection spectroscopy was demonstrated analytically and experimentally. The infrared spectral region was selected as the operational spectral range in order to provide unique identification of the contaminants along with sufficient sensitivity to detect trace contaminant concentrations. It was determined theoretically that a monolayer of the contaminants could be detected and identified using optimized experimental procedures. This ability was verified experimentally. Procedures were developed to correct the attenuated total reflectance spectra for thick sample distortion. However, by using two different element designs the need for such correction can be avoided.

  3. Assessing human skin with diffuse reflectance spectroscopy and colorimetry

    NASA Astrophysics Data System (ADS)

    Seo, InSeok; Liu, Yang; Bargo, Paulo R.; Kollias, Nikiforos

    2012-02-01

    Colorimetry has been used as an objective measure of perceived skin color by human eye to document and score physiological responses of the skin from external insults. CIE color space values (L*, a* and b*) are the most commonly used parameters to correlate visually perceived color attributes such as L* for pigment, a* for erythema, and b* for sallowness of the skin. In this study, we investigated the relation of Lab color scale to the amount of major skin chromophores (oxy-, deoxyhemoglobin and melanin) calculated from diffuse reflectance spectroscopy. Thirty two healthy human subjects with ages from 20 to 70 years old, skin types I-VI, were recruited for the study. DRS and colorimetry measurements were taken from the left and right cheeks, and on the right upper inner arm. The melanin content calculated from 630-700 nm range of DRS measurements was shown to correlate with the lightness of skin (L*) for most skin types. For subjects with medium-to-light complexion, melanin measured at the blue part spectrum and hemoglobin interfered on the relation of lightness of the skin color to the melanin content. The sallowness of the skin that is quantified by the melanin contribution at the blue part spectrum of DRS was found to be related to b* scale. This study demonstrates the importance of documenting skin color by assessing individual skin chromophores with diffuse reflectance spectroscopy, in comparison to colorimetry assessment.

  4. Autofluorescence and diffuse reflectance patterns in cervical spectroscopy

    NASA Astrophysics Data System (ADS)

    Marin, Nena Maribel

    Fluorescence and diffuse reflectance spectroscopy are two new optical technologies, which have shown promise to aid in the real time, non-invasive identification of cancers and precancers. Spectral patterns carry a fingerprint of scattering, absorption and fluorescence properties in tissue. Scattering, absorption and fluorescence in tissue are directly affected by biological features that are diagnostically significant, such as nuclear size, micro-vessel density, volume fraction of collagen fibers, tissue oxygenation and cell metabolism. Thus, analysis of spectral patterns can unlock a wealth of information directly related with the onset and progression of disease. Data from a Phase II clinical trial to assess the technical efficacy of fluorescence and diffuse reflectance spectroscopy acquired from 850 women at three clinical locations with two research grade optical devices is calibrated and analyzed. Tools to process and standardize spectra so that data from multiple spectrometers can be combined and analyzed are presented. Methodologies for calibration and quality assurance of optical systems are established to simplify design issues and ensure validity of data for future clinical trials. Empirically based algorithms, using multivariate statistical approaches are applied to spectra and evaluated as a clinical diagnostic tool. Physically based algorithms, using mathematical models of light propagation in tissue are presented. The presented mathematical model combines a diffusion theory in P3 approximation reflectance model and a 2-layer fluorescence model using exponential attenuation and diffusion theory. The resulting adjoint fluorescence and reflectance model extracts twelve optical properties characterizing fluorescence efficiency of cervical epithelium and stroma fluorophores, stromal hemoglobin and collagen absorption, oxygen saturation, and stromal scattering strength and shape. Validations with Monte Carlo simulations show that adjoint model extracted

  5. [The research progress in determining lignocellulosic content by near infrared reflectance spectroscopy technology].

    PubMed

    Du, Juan; An, Dong; Xia, Tian; Huang, Yan-Hua; Li, Hong-Chao; Zhang, Yun-Wei

    2013-12-01

    Near infrared reflectance spectroscopy technology, as a new analytic method, can be used to determine the content of lignin, cellulose and hemi-cellulose which is faster, effective, easier to operate, and more accurate than the traditional wet chemical methods. Nowadays it has been widely used in measuring the composition of lignocelluloses in woody plant and herbaceous plant. The domestic and foreign research progress in determining the lignin, cellulose and hemi-cellulose content in woody plant ( wood and bamboo used as papermaking raw materials and wood served as potential biomass energy) and herbaceous plant (forage grass and energy grass) by near infrared reflectance spectroscopy technology is comprehensively summarized and the advances in method studies of measuring the composition of lignocelluloses by near infrared reflectance spectroscopy technology are summed up in three aspects, sample preparation, spectral data pretreatment and wavelength selection methods, and chemometric analysis respectively. Four outlooks are proposed combining the development statues of wood, forage grass and energy grass industry. First of all, the authors need to establish more feasible and applicable models for a variety of uses which can be used for more species from different areas, periods and anatomical parts. Secondly, comprehensive near infrared reflectance spectroscopy data base of grass products quality index needs to be improved to realize on-line quality and process control in grassproducts industry, which can guarantee the quality of the grass product. Thirdly, the near infrared reflectance spectroscopy quality index model of energy plant need to be built which can not only contribute to breed screening, but also improve the development of biomass industry. Besides, modeling approaches are required to be explored and perfected any further. Finally, the authors need to try our best to boost the advancement in the determination method of lignin, cellulose and hemi

  6. Infrared spectroscopy of mass-selected carbocations

    SciTech Connect

    Duncan, Michael A.

    2015-01-22

    Small carbocations are of longstanding interest in astrophysics, but there are few measurements of their infrared spectroscopy in the gas phase at low temperature. There are fewer-still measurements of spectra across the full range of IR frequencies useful to obtain an IR signature of these ions to detect them in space. We have developed a pulsed-discharge supersonic nozzle ion source producing high densities of small carbocations at low temperatures (50–70K). We employ mass-selected photodissociation spectroscopy and the method of rare gas “tagging”, together with new broadly tunable infrared OPO lasers, to obtain IR spectra for a variety of small carbocations including C{sub 2}H{sub 3}{sup +}, C{sub 3}H{sub 3}{sup +}, C{sub 3}H{sub 5}{sup +}, protonated benzene and protonated naphthalene. Spectra in the frequency range of 600–4500 cm{sup −1} provide new IR data for these ions and evidence for the presence of co-existing isomeric structures (e.g., C{sub 3}H{sub 3}{sup +} is present as both cyclopropenyl and propargyl). Protonated naphthalene has sharp bands at 6.2, 7.7 and 8.6 microns matching prominent features in the UIR spectra.

  7. Titanium-silicon oxide film structures for polarization-modulated infrared reflection absorption spectroscopy

    PubMed Central

    Dunlop, Iain E.; Zorn, Stefan; Richter, Gunther; Srot, Vesna; Kelsch, Marion; van Aken, Peter A.; Skoda, Maximilian; Gerlach, Alexander; Spatz, Joachim P.; Schreiber, Frank

    2010-01-01

    We present a titanium-silicon oxide film structure that permits polarization modulated infrared reflection absorption spectroscopy on silicon oxide surfaces. The structure consists of a ~6 nm sputtered silicon oxide film on a ~200 nm sputtered titanium film. Characterization using conventional and scanning transmission electron microscopy, electron energy loss spectroscopy, X-ray photoelectron spectroscopy and X-ray reflectometry is presented. We demonstrate the use of this structure to investigate a selectively protein-resistant self-assembled monolayer (SAM) consisting of silane-anchored, biotin-terminated poly(ethylene glycol) (PEG). PEG-associated IR bands were observed. Measurements of protein-characteristic band intensities showed that this SAM adsorbed streptavidin whereas it repelled bovine serum albumin, as had been expected from its structure. PMID:20418963

  8. Quantification of tissue oxygenation levels using diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    B. S., Suresh Anand; N., Sujatha

    2010-12-01

    Tumor growth is characterized by increased metabolic activity. The light absorption profile of hemoglobin in dysplastic tissue is different from a normal tissue. Neovascularization is a hallmark of many diseases and can serve as a predictive biomarker for the detection of cancers. Spectroscopic techniques can provide information about the metabolic and morphological changes related to the progression of neoplasia. Diffuse reflectance spectroscopy (DRS) measures the absorption and scattering properties of a biological tissue and this method can provide clinically useful information for the early diagnosis of epithelial precancers. We used tissue simulating phantoms with absorbing and scattering molecules for the determination of total hemoglobin concentration, hemoglobin oxygen saturation and intensity difference between the deoxy and oxy hemoglobin bands. The results show promising approach for the differentiating normal and malignant states of a tissue.

  9. Quantification of tissue oxygenation levels using diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    B. S., Suresh Anand; N., Sujatha

    2011-08-01

    Tumor growth is characterized by increased metabolic activity. The light absorption profile of hemoglobin in dysplastic tissue is different from a normal tissue. Neovascularization is a hallmark of many diseases and can serve as a predictive biomarker for the detection of cancers. Spectroscopic techniques can provide information about the metabolic and morphological changes related to the progression of neoplasia. Diffuse reflectance spectroscopy (DRS) measures the absorption and scattering properties of a biological tissue and this method can provide clinically useful information for the early diagnosis of epithelial precancers. We used tissue simulating phantoms with absorbing and scattering molecules for the determination of total hemoglobin concentration, hemoglobin oxygen saturation and intensity difference between the deoxy and oxy hemoglobin bands. The results show promising approach for the differentiating normal and malignant states of a tissue.

  10. Analysis of silage composition by near-infrared reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Reeves, James B., III; Blosser, Timothy H.; Colenbrander, V. F.

    1991-02-01

    Two studies were performed to investigate the feasibility of using near infrared reflectance spectroscopy (NIRS) with undried silages. In the first study silages were analyzed for major components (e. g. dry matter crude protein and other forms of nitrogen fiber and in vitro digestible dry matter) and short chain fatty acids (SCFA). NIRS was found to operate satisfactorily except for some forms of nitrogen and SCFA. In study two various methods of grinding spectral regions and sample presentation were examined. Undried Wiley ground samples in a rectangular cell gave the best overall results for non-dry ice undried grinds with wavelengths between 1100 and 2498 nm. Silages scanned after drying however produced the best results. Intact samples did not perform as well as ground samples and wavelengths below 1100 nm were of little use. 2 .

  11. Laboratory Studies of Organic Compounds With Reflectance Spectroscopy

    NASA Astrophysics Data System (ADS)

    Curchin, J. M.; Clark, R. N.; Hoefen, T. M.

    2007-12-01

    In order to properly interpret reflectance spectra of any solar system surface from the earth to the Oort cloud, laboratory spectra of candidate materials for comparative analysis are needed. Although the common cosmochemical species (H2O, CO2, CO, NH3, and CH4) are well represented in the spectroscopic literature, comparatively little reflectance work has been done on organics from room to cryogenic temperatures at visible to near infrared wavelengths. Reflectance spectra not only enhance weak or unseen transmission features, they are also more analogous to spectra obtained by spacecraft that are imaging such bodies as giant planet moons, kuiper belt objects, centaurs, comets and asteroids, as well as remote sensing of the earth. The USGS Spectroscopy Laboratory is measuring reflectance spectra of organic compounds from room to cryogenic temperatures over the spectral range of 0.35 to 15.5 microns. This region encompasses the fundamental absorptions and many overtones and combinations of C, H, O, and N molecular bonds. Because most organic compounds belong to families whose members have similar structure and composition, individual species identification within a narrow wavelength range may be ambiguous. By measuring spectral reflectance of the pure laboratory samples from the visible through the near and mid-infrared, absorption bands unique to each can be observed, cataloged, and compared to planetary reflectance data. We present here spectra of organic compounds belonging to five families: the alkanes, alkenes, alkynes, aromatics, and cyanides. Common to all of these are the deep C-H stretch fundamental absorptions, which shift shortward from 3.35+ microns in alkanes to 3.25+ microns in aromatics, to 3.2+ microns in alkenes, and down to 3.0+ microns in alkynes. Mid-IR absorptions due to C-H bending deformations at 6.8+ and 7.2+ microns are also identified. In the near infrared these stretching and bending fundamentals yield a diagnostic set of combination

  12. Nanoscale Andreev Reflection Spectroscopy on Bismuth-Chalcogenide Topological Insulators

    NASA Astrophysics Data System (ADS)

    Granstrom, C. R.; Fridman, I.; Liang, R. X.; Lei, H.; Petrovic, C.; Yang, Shuo; Wu, K. H.; Wei, J. Y. T.

    Andreev reflection (AR) is the basic mechanism underlying the superconducting proximity effect which, at the interface between a topological insulator (TI) and a spin-singlet superconductor, can induce chiral p-wave pairing in the TI. Despite this novel importance, it is not well understood how AR is affected by the unique attributes of a three-dimensional TI, namely the Dirac dispersion and helical spin-polarization of its surface states. In this work, we use both s-wave and d-wave superconducting tips to perform AR spectroscopy at 4.2 K on flux-grown Bi2Se3 and Bi2Te3 single crystals, as well as epitaxial Bi2Se3 thin films grown on SrTiO3 substrates by molecular beam epitaxy. These AR measurements are complemented by scanning tunneling spectroscopy, in order to characterize the superconducting tip as well as the doping level and surface condition of the TI sample. Our data are analyzed using BTK theory, in light of the characteristic band structure of bismuth chalcogenides, to elucidate how the band structure affects the AR process. Work supported by: NSERC, CFI-OIT, the Canadian Institute for Advanced Research, and the Department of Energy.

  13. Andreev Reflection Spectroscopy on Bismuth- Chalcogenide Topological Insulators

    NASA Astrophysics Data System (ADS)

    Granstrom, C. R.; Fridman, I.; Wei, J. Y. T.; Lei, H.; Petrovic, C.; Liang, R. X.

    2015-03-01

    Andreev reflection (AR) is the basic mechanism underlying the superconducting proximity effect which, at the interface between a topological insulator (TI) and a spin-singlet superconductor, can give rise to Majorana-like states. Despite this basic importance, little is known about how AR is affected by the unique attributes of a three-dimensional TI, namely the linear dispersion and spin-momentum locking of its surface states. In this study, we use both s-wave and d-wave superconducting tips to perform AR spectroscopy on variously flux-grown Bi2Se3andBi2Te3 single crystals. The AR measurements are complemented by in-situ scanning tunneling spectroscopy, down to 300 mK and up to 9 T, in order to determine the doping level and characterize both the sample surface and tip condition. Our data are analyzed in terms of the characteristic band structure of Bi-chalcogenides, to elucidate how it affects the AR process. Work supported by NSERC, CFI-OIT, CIFAR, and the Center for Emergent Superconductivity, an Energy Frontier Research Center funded by the U.S. DOE, Office for Basic Energy Science.

  14. Resonant Reflection Spectroscopy of Biomolecular Arrays in Muscle

    PubMed Central

    Young, Kevin W.; Radic, Stojan; Myslivets, Evgeny; O’Connor, Shawn M.; Lieber, Richard L.

    2014-01-01

    Sarcomeres, the functional units of contraction in striated muscle, are composed of an array of interdigitating protein filaments. Direct interaction between overlapping filaments generates muscular force, which produces animal movement. When filament length is known, sarcomere length successfully predicts potential force, even in whole muscles that contain billions of sarcomere units. Inability to perform in vivo sarcomere measurements with submicrometer resolution is a long-standing challenge in the muscle physiology field and has hampered studies of normal muscle function, adaptation, injury, aging, and disease, particularly in humans. Here, we develop theory and demonstrate the feasibility of to our knowledge a new technique that measures sarcomere length with submicrometer resolution. In this believed novel approach, we examine sarcomere structure by measuring the multiple resonant reflections that are uniquely defined by Fourier decomposition of the sarcomere protein spatial framework. Using a new supercontinuum spectroscopic system, we show close agreement between sarcomere lengths measured by resonant reflection spectroscopy and laser diffraction in an ensemble of 10 distinct muscles. PMID:25418304

  15. Optimal wavelength selection for noncontact reflection photoplethysmography

    NASA Astrophysics Data System (ADS)

    Corral Martinez, Luis F.; Paez, Gonzalo; Strojnik, Marija

    2011-08-01

    In this work, we obtain backscattered signals from human forehead for wavelengths from 380 to 980 nm. The results reveal bands with strong pulsatile signals that carry useful information. We describe those bands as the most suitable wavelengths in the visible and NIR regions from which heart and respiratory rate parameters can be derived using long distance non-contact reflection photoplethysmography analysis. The latter results show the feasibility of a novel technique for remotely detection of vital signs in humans. This technique, which may include morphological analysis or maps of tissue oxygenation, is a further step to real non-invasive remote monitoring of patients.

  16. Selective and differential optical spectroscopies in photosynthesis.

    PubMed

    Krausz, Elmars

    2013-10-01

    Photosynthetic pigments are inherently intense optical absorbers and have strong polarisation characteristics. They can also luminesce strongly. These properties have led optical spectroscopies to be, quite naturally, key techniques in photosynthesis. However, there are typically many pigments in a photosynthetic assembly, which when combined with the very significant inhomogeneous and homogeneous linewidths characteristic of optical transitions, leads to spectral congestion. This in turn has made it difficult to provide a definitive and detailed electronic structure for many photosynthetic assemblies. An electronic structure is, however, necessary to provide a foundation for any complete description of fundamental processes in photosynthesis, particularly those in reaction centres. A wide range of selective and differential spectral techniques have been developed to help overcome the problems of spectral complexity and congestion. The techniques can serve to either reduce spectral linewidths and/or extract chromophore specific information from unresolved spectral features. Complementary spectral datasets, generated by a number of techniques, may then be combined in a 'multi-dimensional' theoretical analysis so as to constrain and define effective models of photosynthetic assemblies and their fundamental processes. A key example is the work of Renger and his group (Raszewski, Biophys J 88(2):986-998, 2005) on PS II reaction centre assemblies. This article looks to provide an overview of some of these techniques and indicate where their strengths and weaknesses may lie. It highlights some of our own contributions and indicates areas where progress may be possible.

  17. Secondary cell wall development in cotton fibers as examined with attenuated total reflection Fourier transform infrared spectroscopy

    USDA-ARS?s Scientific Manuscript database

    Cotton fibers harvested at 18, 20, 24, 28, 32, 36 and 40 days after flowering were examined using attenuated total reflection Fourier transform-infrared (ATR FT-IR) spectroscopy. The selected harvesting points coincide with secondary cell wall (SCW) development in the fibers. Progressive but moderat...

  18. Prediction of leaf chemistry by the use of visible and near infrared reflectance spectroscopy

    NASA Technical Reports Server (NTRS)

    Card, Don H.; Peterson, David L.; Matson, Pamela A.; Aber, John D.

    1988-01-01

    The chemical content of dry, ground leaf material sampled from deciduous and conifer tree species from sites in Alaska, Wisconsin, and California was estimated using visible and shortwave IR spectroscopy. Seven chemical components - sugar, starch, protein, cellulose, total chlorophyll, lignin, and total nitrogen - were analyzed by wet chemical methods and their concentrations regressed against log 1/rho and first and second differences of log 1/rho (where rho is measured reflectance) at wavelengths selected by stepwise regression. Predictions of chemical concentrations based on cross validation suggest that this technique may be useful for extracting vegetation canopy biochemical information by remote sensing.

  19. Prediction of leaf chemistry by the use of visible and near infrared reflectance spectroscopy

    NASA Technical Reports Server (NTRS)

    Card, Don H.; Peterson, David L.; Matson, Pamela A.; Aber, John D.

    1988-01-01

    The chemical content of dry, ground leaf material sampled from deciduous and conifer tree species from sites in Alaska, Wisconsin, and California was estimated using visible and shortwave IR spectroscopy. Seven chemical components - sugar, starch, protein, cellulose, total chlorophyll, lignin, and total nitrogen - were analyzed by wet chemical methods and their concentrations regressed against log 1/rho and first and second differences of log 1/rho (where rho is measured reflectance) at wavelengths selected by stepwise regression. Predictions of chemical concentrations based on cross validation suggest that this technique may be useful for extracting vegetation canopy biochemical information by remote sensing.

  20. A study on the protection to relics and the related problems with diffuse reflectance spectroscopy.

    PubMed

    Wang, Liqin; Liang, Guozheng; Dang, Gaochao

    2005-03-01

    The application of diffuse reflectance spectroscopy to relic protection is studied by using a self-made fiber optics reflectance spectrophotometer. The major work done includes: (1) the composition of pigment on colored relics and its changes are identified; (2) the change on metal surface is monitored; (3) the reflectance spectrum characteristics of relic protection materials are studied. The results tell that diffuse reflectance spectroscopy is a new protection technique, characterized by its quickness and non-destructiveness to the relic.

  1. Intramyocardial oxygen transport by quantitative diffuse reflectance spectroscopy in calves

    NASA Astrophysics Data System (ADS)

    Lindbergh, Tobias; Larsson, Marcus; Szabó, Zoltán; Casimir-Ahn, Henrik; Strömberg, Tomas

    2010-03-01

    Intramyocardial oxygen transport was assessed during open-chest surgery in calves by diffuse reflectance spectroscopy using a small intramuscular fiber-optic probe. The sum of hemo- and myoglobin tissue fraction and oxygen saturation, the tissue fraction and oxidation of cytochrome aa3, and the tissue fraction of methemoglobin were estimated using a calibrated empirical light transport model. Increasing the oxygen content in the inhaled gas, 21%-50%-100%, in five calves (group A) gave an increasing oxygen saturation of 19+/-4%, 24+/-5%, and 28+/-8% (p<0.001, ANOVA repeated measures design) and mean tissue fractions of 1.6% (cytochrome aa3) and 1.1% (hemo- and myoglobin). Cardiac arrest in two calves gave an oxygen saturation lower than 5%. In two calves (group B), a left ventricular assistive device (LVAD pump) was implanted. Oxygen saturation in group B animals increased with LVAD pump speed (p<0.001, ANOVA) and with oxygen content in inhaled gas (p<0.001, ANOVA). The cytochrome aa3 oxidation level was above 96% in both group A and group B calves, including the two cases involving cardiac arrest. In conclusion, the estimated tissue fractions and oxygenation/oxidation levels of the myocardial chromophores during respiratory and hemodynamic provocations were in agreement with previously presented results, demonstrating the potential of the method.

  2. Evaluation of emulsion stability by diffuse reflectance spectroscopy.

    PubMed

    Akers, M J; Lach, J L

    1976-02-01

    A new method is described for evaluating the stability of emulsion bases and active components contained within such emulsions. Diffuse reflectance spectroscopy (DRS) is a technique that has the capability of detecting changes in particle size, surface properties, or drug quality of emulsions as a function of time without disturbance of the system. Such physical or chemical changes are monitored by changes in the visible and UV wavelength spectral characteristics of the emulsified systems. Four basic emulsion systems were prepared and analyzed for physical stability for 6 months by three techniques: visible coalescence, particle counting measurement, and DRS. Two drugs, aspirin and ascorbic acid, were then incorporated within stable emulsion bases, and the chemical stability of these drugs was monitored by DRS for 6 months. Results were compared with concomitant quantitative drug assay procedures. Good agreement was observed when data from DRS and analytical measurements were compared. The DRS technique may be used as a supportive method, offering simplicity and expedience, with other methods of evaluating emulsion stability and drug stability within emulsified systems.

  3. Noninvasive measurements of carotenoids in bovine udder by reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Klein, Julia; Darvin, Maxim E.; Müller, Kerstin E.; Lademann, Jürgen

    2012-10-01

    For a long time, the antioxidative status in cattle has been discussed as an indicator for stress conditions resulting from disease or exertion. Until now, invasive approaches have been necessary to obtain blood samples or biopsy materials and gain insights into the antioxidative status of cattle. Due to these efforts and the costs of the analyses, serial sampling is feasible in an experimental setting, but not for measurements on a routine basis. The present study focuses on the feasibility of an innovative, noninvasive spectroscopic technique that allows in vivo measurements of carotenoids in the skin by reflection spectroscopy. To this end, in a first trial, repeated measurements of the carotenoid concentration of the udder skin were performed on 25 healthy cattle from different breeds. Carotenoid concentrations showed highly significant differences between individual animals (P<0.001), although they were kept under the same environmental conditions and received the same diet. The carotenoid concentrations in "sensitive" and "robust" cows (evaluated by a temperament test) differed significantly (P<0.005), with higher concentrations observed in robust cows.

  4. Diffuse reflectance spectroscopy: towards clinical application in breast cancer.

    PubMed

    Evers, Daniel J; Nachabe, Rami; Vranken Peeters, Marie-Jeanne; van der Hage, Jos A; Oldenburg, Hester S; Rutgers, Emiel J; Lucassen, Gerald W; Hendriks, Benno H W; Wesseling, Jelle; Ruers, Theo J M

    2013-01-01

    Diffuse reflectance spectroscopy (DRS) is a promising new technique for breast cancer diagnosis. However, inter-patient variation due to breast tissue heterogeneity may interfere with the accuracy of this technique. To tackle this issue, we aim to determine the diagnostic accuracy of DRS in individual patients. With this approach, DRS measurements of normal breast tissue in every individual patient are directly compared with measurements of the suspected malignant tissue. Breast tissue from 47 female patients was analysed ex vivo by DRS. A total of 1,073 optical spectra were collected. These spectra were analyzed for each patient individually as well as for all patients collectively and results were compared to the pathology analyses. Collective patient data analysis for discrimination between normal and malignant breast tissue resulted in a sensitivity of 90 %, a specificity of 88 %, and an overall accuracy of 89 %. In the individual analyses all measurements per patient were categorized as either benign or malignant. The discriminative accuracy of these individual analyses was nearly 100 %. The diagnosis was classified as uncertain in only one patient. Based on the results presented in this study, we conclude that the analysis of optical characteristics of different tissue classes within the breast of a single patient is superior to an analysis using the results of a cohort data analysis. When integrated into a biopsy device, our results demonstrate that DRS may have the potential to improve the diagnostic workflow in breast cancer.

  5. Diffuse reflectance spectroscopy for the measurement of tissue oxygen saturation.

    PubMed

    Sircan-Kucuksayan, A; Uyuklu, M; Canpolat, M

    2015-12-01

    Tissue oxygen saturation (StO2) is a useful parameter for medical applications. A spectroscopic method has been developed to detect pathologic tissues, due to a lack of normal blood circulation, by measuring StO2. In this study, human blood samples with different levels of oxygen saturation have been prepared and spectra were acquired using an optical fiber probe to investigate the correlation between the oxygen saturation levels and the spectra. A linear correlation between the oxygen saturation and ratio of the intensities (760 nm to 790 nm) of the spectra acquired from blood samples has been found. In a validation study, oxygen saturations of the blood samples were estimated from the spectroscopic measurements with an error of 2.9%. It has also been shown that the linear dependence between the ratio and the oxygen saturation of the blood samples was valid for the blood samples with different hematocrits. Spectra were acquired from the forearms of 30 healthy volunteers to estimate StO2 prior to, at the beginning of, after 2 min, and at the release of total vascular occlusion. The average StO2 of a forearm before and after the two minutes occlusion was significantly different. The results suggested that optical reflectance spectroscopy is a sensitive method to estimate the StO2 levels of human tissue. The technique developed to measure StO2 has potential to detect ischemia in real time.

  6. Probing skin interaction with hydrogen peroxide using diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Zonios, George; Dimou, Aikaterini; Galaris, Dimitrios

    2008-01-01

    Hydrogen peroxide is an important oxidizing agent in biological systems. In dermatology, it is frequently used as topical antiseptic, it has a haemostatic function, it can cause skin blanching, and it can facilitate skin tanning. In this work, we investigated skin interaction with hydrogen peroxide, non-invasively, using diffuse reflectance spectroscopy. We observed transient changes in the oxyhaemoglobin and deoxyhaemoglobin concentrations as a result of topical application of dilute H2O2 solutions to the skin, with changes in deoxyhaemoglobin concentration being more pronounced. Furthermore, we did not observe any appreciable changes in melanin absorption properties as well as in the skin scattering properties. We also found no evidence for production of oxidized haemoglobin forms. Our observations are consistent with an at least partial decomposition of hydrogen peroxide within the stratum corneum and epidermis, with the resulting oxygen and/or remaining hydrogen peroxide inducing vasoconstriction to dermal blood vessels and increasing haemoglobin oxygen saturation. An assessment of the effects of topical application of hydrogen peroxide to the skin may serve as the basis for the development of non-invasive techniques to measure skin antioxidant capacity and also may shed light onto skin related disorders such as vitiligo.

  7. Aerosol collection and analysis using diffuse reflectance infrared spectroscopy

    NASA Astrophysics Data System (ADS)

    Samuels, Alan C.; Wong, Diane M.; Meyer, Gerald J.; Roelant, Geoffrey J.; Williams, Barry R.; Miles, Ronald W., Jr.; Manning, Christopher J.

    2004-08-01

    Infrared spectroscopy is routinely employed for the identification of organic molecules and, more recently, for the classification of biological materials. We have developed a sample collection method that facilitates infrared analysis of airborne particulates using a diffuse reflectance (DR) technique. Efforts are underway to extend the method to include simultaneous analysis of vapor phase organics by using adsorbent substrates compatible with the DR technique. This series of laboratory results provides proof-of-principle for both the sample collection and data collection processes. Signal processing of the DR spectra is shown to provide rapid qualitative identification of representative aerosol materials, including particulate matter commonly found in the environment. We compare the results for such materials as bacterial spores, pollens and molds, clays and dusts, smoke and soot. Background correction analysis is shown to be useful for differentiation and identification of these constituents. Issues relating to complex mixtures of environmental samples under highly variable conditions are considered. Instrumentation development and materials research are now underway with the aim of constructing a compact sampling system for near real-time monitoring of aerosol and organic pollutants. A miniature, tilt-compensated Fourier transform spectrometer will provide spectroscopic interrogation. A series of advanced digital signal processing methods are also under development to enhance the sensor package. The approach will be useful for industrial applications, chemical and biological agent detection, and environmental monitoring for chemical vapors, hazardous air pollutants, and allergens.

  8. Method for rapid multidiameter single-fiber reflectance and fluorescence spectroscopy through a fiber bundle

    NASA Astrophysics Data System (ADS)

    Amelink, A.; Hoy, C. L.; Gamm, U. A.; Sterenborg, H. J. C. M.; Robinson, D. J.

    2014-03-01

    We have recently demonstrated a means for quantifying the absorption and scattering properties of biological tissue through multidiameter single-fiber reflectance (MDSFR) spectroscopy. These measurements can be used to correct single-fiber fluorescence (SFF) spectra for the influence of optical properties, enabling quantification of intrinsic fluorescence. In our previous work, we have used a series of pinholes to show that selective illumination and light collection using a coherent fiber bundle can simulate a single solid-core optical fiber with variable diameter for the purposes of MDSFR spectroscopy. Here, we describe the construction and validation of a clinical MDSFR/SFF spectroscopy system that avoids the limitations encountered with pinholes and free-space optics. During one measurement, the new system acquires reflectance spectra at the effective diameters of 200, 600, and 1000 μm, and a fluorescence spectrum at an effective diameter of 1000 μm. From these spectra, we measure the absolute absorption coefficient, μa, reduced scattering coefficient, μ's, phase function parameter, γ, and intrinsic fluorescence, Qμfa, across the measured spectrum. We validate the system using Intralipid- and polystyrene sphere-based scattering phantoms, with and without the addition of the absorber Evans Blue. Finally, we demonstrate the combined MDSFR/SFF of phantoms with varying concentrations of Intralipid and fluorescein, wherein the scattering properties are measured by MDSFR and used to correct the SFF spectrum for accurate quantification of Qμfa.

  9. Method for rapid multidiameter single-fiber reflectance and fluorescence spectroscopy through a fiber bundle.

    PubMed

    Hoy, Christopher L; Gamm, Ute A; Sterenborg, Henricus J C M; Robinson, Dominic J; Amelink, Arjen

    2013-10-01

    We have recently demonstrated a means for quantifying the absorption and scattering properties of biological tissue through multidiameter single-fiber reflectance (MDSFR) spectroscopy. These measurements can be used to correct single-fiber fluorescence (SFF) spectra for the influence of optical properties, enabling quantification of intrinsic fluorescence. In our previous work, we have used a series of pinholes to show that selective illumination and light collection using a coherent fiber bundle can simulate a single solid-core optical fiber with variable diameter for the purposes of MDSFR spectroscopy. Here, we describe the construction and validation of a clinical MDSFR/SFF spectroscopy system that avoids the limitations encountered with pinholes and free-space optics. During one measurement, the new system acquires reflectance spectra at the effective diameters of 200, 600, and 1000 μm, and a fluorescence spectrum at an effective diameter of 1000 μm. From these spectra, we measure the absolute absorption coefficient, μ(a), reduced scattering coefficient, μ'(s'), phase function parameter, γ, and intrinsic fluorescence, Qμ(a,x)(f), across the measured spectrum. We validate the system using Intralipid- and polystyrene sphere-based scattering phantoms, with and without the addition of the absorber Evans Blue. Finally, we demonstrate the combined MDSFR/SFF of phantoms with varying concentrations of Intralipid and fluorescein, wherein the scattering properties are measured by MDSFR and used to correct the SFF spectrum for accurate quantification of Qμ(a,x)(f).

  10. Near- and Mid-Infrared Reflectance Spectroscopy for the Quantitative and Qualitative Analysis of Agricultural Products

    USDA-ARS?s Scientific Manuscript database

    For several decades near-infrared diffuse reflectance spectroscopy (NIRS) has been used to determine the composition of a variety of agricultural products. More recently, diffuse reflectance Fourier transform mid-infrared spectroscopy (DRIFTS) has similarly been shown to be able to determine the co...

  11. Fluorescence and Diffuse Reflectance Spectroscopy for Breast Cancer Diagnosis During Core Needle Biopsy

    DTIC Science & Technology

    2007-09-01

    The goal of this project is to explore the potential of using tissue fluorescence and diffuse reflectance spectroscopy for breast cancer detection...sensor based on tissue fluorescence and diffuse reflectance spectroscopy as an adjunct diagnostic tool, which has the potential to provide guidance for core needle breast biopsy.

  12. Reflectance spectroscopy of mineral samples at IAS/Orsay laboratory

    NASA Astrophysics Data System (ADS)

    Bonello, G.; Bibring, J. P.; Erard, S.; D'Hendecourt, L.; Bardintzeff, J. M.; Platevoet, B.

    2003-04-01

    -directional configuration with variable incident and emergent angles ranging from 10 to 80°. The samples are selected, provided and prepared by the laboratoire de pétrologie which expertise is greatly needed to interpret the instruments data reduction in terms of geological history and geophysical mechanisms. Further investigations can be made with microprobe, X-ray diffraction or SEM coupled to EDS facilities present on the campus. We present first results on natural slabs of basalt polished with different abrasive powders compared to mechanically crushed powders separated into different particle size ranges of the same material and diffusion properties of natural aerial and fluvial eroded sands. We discuss the implication on reflectance spectra analysis and further investigations to be made.

  13. Reconstructing spectral reflectance from digital camera through samples selection

    NASA Astrophysics Data System (ADS)

    Cao, Bin; Liao, Ningfang; Yang, Wenming; Chen, Haobo

    2016-10-01

    Spectral reflectance provides the most fundamental information of objects and is recognized as the "fingerprint" of them, since reflectance is independent of illumination and viewing conditions. However, reconstructing high-dimensional spectral reflectance from relatively low-dimensional camera outputs is an illposed problem and most of methods requaired camera's spectral responsivity. We propose a method to reconstruct spectral reflectance from digital camera outputs without prior knowledge of camera's spectral responsivity. This method respectively averages reflectances of selected subset from main training samples by prescribing a limit to tolerable color difference between the training samples and the camera outputs. Different tolerable color differences of training samples were investigated with Munsell chips under D65 light source. Experimental results show that the proposed method outperforms classic PI method in terms of multiple evaluation criteria between the actual and the reconstructed reflectances. Besides, the reconstructed spectral reflectances are between 0-1, which make them have actual physical meanings and better than traditional methods.

  14. Diffuse Reflectance Spectroscopy for Total Carbon Analysis of Hawaiian Soils

    NASA Astrophysics Data System (ADS)

    McDowell, M. L.; Bruland, G. L.; Deenik, J. L.; Grunwald, S.; Uchida, R.

    2010-12-01

    Accurate assessment of total carbon (Ct) content is important for fertility and nutrient management of soils, as well as for carbon sequestration studies. The non-destructive analysis of soils by diffuse reflectance spectroscopy (DRS) is a potential supplement or alternative to the traditional time-consuming and costly combustion method of Ct analysis, especially in spatial or temporal studies where sample numbers are large. We investigate the use of the visible to near-infrared (VNIR) and mid-infrared (MIR) spectra of soils coupled with chemometric analysis to determine their Ct content. Our specific focus is on Hawaiian soils of agricultural importance. Though this technique has been introduced to the soil community, it has yet to be fully tested and used in practical applications for all soil types, and this is especially true for Hawaii. In short, DRS characterizes and differentiates materials based on the variation of the light reflected by a material at certain wavelengths. This spectrum is dependent on the material’s composition, structure, and physical state. Multivariate chemometric analysis unravels the information in a set of spectra that can help predict a property such as Ct. This study benefits from the remarkably diverse soils of Hawaii. Our sample set includes 216 soil samples from 145 pedons from the main Hawaiian Islands archived at the National Soil Survey Center in Lincoln, NE, along with more than 50 newly-collected samples from Kauai, Oahu, Molokai, and Maui. In total, over 90 series from 10 of the 12 soil orders are represented. The Ct values of these samples range from < 1% - 55%. We anticipate that the diverse nature of our sample set will ensure a model with applicability to a wide variety of soils, both in Hawaii and globally. We have measured the VNIR and MIR spectra of these samples and obtained their Ct values by dry combustion. Our initial analyses are conducted using only samples obtained from the Lincoln archive. In this

  15. [Determination of baicalin and total flavonoids in Radix scutellariae by near infrared diffuse reflectance spectroscopy].

    PubMed

    Huang, Qian-qian; Pan, Rui-le; Wei, Jian-he; Wu, Yan-wei; Zhang, Lu-da

    2009-09-01

    The objective of the present study was to develop a method for rapid determination of baicalin and total flavonoids in radix scutellariae by near infrared diffuse reflectance spectroscopy. Sixty one samples of radix scutellariae from different areas containing baicalin of 12.24%-21.34% and total flavonoids of 16.08%-26.52% were used. The range of 8000-4000 cm(-1) of near infrared spectra (NIRS) was selected. Calibration models were established using the PLS(partial least squares). Different spectra pretreatment methods were compared and the optimal model was selected. The study showed that first derivative pretreatments and minimum-maximum normalization methods can be used to extracted spectra information thoroughly to analyze the contents of baicalin and total flavonoids, respectively. The correlation coefficient (r) of baicalin was 0.9024, SEC was 1.01 (standard deviation of the calibration sets) and SEP was 0.8764 (standarddeviation ofthe prediction sets). The correlation coefficient(r) of total flavonoids was 0.9527, SEC was 0.7850 and SEP was 0.5211. Results indicated that near infrared diffuse reflectance spectroscopy method can be used to analyze the main active components in radix scutellariae rapidly.

  16. Characterization of atherosclerotic plaque by reflection spectroscopy and thermography: a comparison

    NASA Astrophysics Data System (ADS)

    Lilledahl, Magnus B.; Haugen, Olav A.; Randeberg, Lise L.; Svaasand, Lars O.

    2005-04-01

    Many methods for detecting and measuring vulnerable atherosclerotic plaques have been proposed. These include reflection spectroscopy, thermography, ultrasound, computed tomography (CT) and magnetic resonance imaging (MRI). This paper presents an analysis and a comparison of two of these methods, near-infrared reflection spectroscopy (NIRS) and thermography. Most of the published literature evaluate methods statistically. A more analytic approach will make it easier to compare the different methods and determine if the measured signal will be strong enough in a real measurement situation. This is the approach taken in this article. Eight samples of human aorta were examined by NIRS and subsequently prepared for histology. A total of 28 measurement points were selected. A measure of the lipid content based on reflection spectra is proposed. Comparisons of this lipid measure with histology show that the lipid content in the plaques yields relatively small changes in the value of this lipid-index. Reflectance spectra from models based on the diffusion approximation for total reflectance were simulated. Temperature measurements were performed on three Watanabe heritable hyperlipidemic (WHHL) rabbits and one New Zealand white (NZW) rabbit with a thermistor-type intravascular temperature sensor. The measurements gave no significant signals which correlated with the subsequent histology. A simple analytic model was developed which indicates that a temperature increase of more than 0.01-0.04 °C at the surface of a vessel wall, due to inflammation in a plaque, is unlikely. Such a small temperature difference will probably be obscured by normal variation in the vessel wall temperature.

  17. Spectral reflectance and photometric properties of selected rocks

    USGS Publications Warehouse

    Watson, Robert D.

    1971-01-01

    Studies of the spectral reflectance and photometric properties of selected rocks at the USGS Mill Creek, Oklahoma, remote sensing test site demonstrate that discrimination of rock types is possible through reflection measurements, but that the discrimination is complicated by surface conditions, such as weathering and lichen growth. Comparisons between fresh-broken, weathered, and lichen-covered granite show that whereas both degree of weathering and amount of lichen cover change the reflectance quality of the granite, lichen cover also considerably changes the photometric properties of the granite. Measurements of the spectral reflectance normal to the surface of both limestone and dolomite show limestone to be more reflective than dolomite in the wavelength range from 380 to 1550 nanometers. The reflectance difference decreases at view angles greater than 40° owing to the difference in the photometric properties of dolomite and limestone.

  18. Rapid and nondestructive analysis of pharmaceutical products using near-infrared diffuse reflectance spectroscopy.

    PubMed

    Li, Pao; Du, Guorong; Cai, Wensheng; Shao, Xueguang

    2012-11-01

    Near-infrared diffuse reflectance spectroscopy (NIRDRS) was applied to classification and quantification of azithromycin tablets with the aid of chemometric multivariate analysis. Repeatability was investigated by repeated measurements, and the effect of morphology was examined by preparing the tablets in four forms, i.e. tablet product, tablet without coating, powder of tablet without coating, and powder of tablet. Furthermore, baseline elimination by continuous wavelet transform (CWT) and wavenumber selection was discussed for improving the repeatability and accuracy of the method. The results show that the spectra of the samples in the four forms can be measured with an acceptable repeatability, and classification of manufacture sites and quantitative analysis of the active pharmaceutical ingredient (API) can be achieved by principal component analysis (PCA) and partial least squares (PLS) regression, respectively. More importantly, baseline elimination and wavenumber selection can significantly simplify the calculation and improve the results.

  19. Determination of plant silicon content with near infrared reflectance spectroscopy

    PubMed Central

    Smis, Adriaan; Ancin Murguzur, Francisco Javier; Struyf, Eric; Soininen, Eeva M.; Herranz Jusdado, Juan G.; Meire, Patrick; Bråthen, Kari Anne

    2014-01-01

    Silicon (Si) is one of the most common elements in the earth bedrock, and its continental cycle is strongly biologically controlled. Yet, research on the biogeochemical cycle of Si in ecosystems is hampered by the time and cost associated with the currently used chemical analysis methods. Here, we assessed the suitability of Near Infrared Reflectance Spectroscopy (NIRS) for measuring Si content in plant tissues. NIR spectra depend on the characteristics of the present bonds between H and N, C and O, which can be calibrated against concentrations of various compounds. Because Si in plants always occurs as hydrated condensates of orthosilicic acid (Si(OH)4), linked to organic biomolecules, we hypothesized that NIRS is suitable for measuring Si content in plants across a range of plant species. We based our testing on 442 samples of 29 plant species belonging to a range of growth forms. We calibrated the NIRS method against a well-established plant Si analysis method by using partial least-squares regression. Si concentrations ranged from detection limit (0.24 ppmSi) to 7.8% Si on dry weight and were well predicted by NIRS. The model fit with validation data was good across all plant species (n = 141, R2 = 0.90, RMSEP = 0.24), but improved when only graminoids were modeled (n = 66, R2 = 0.95, RMSEP = 0.10). A species specific model for the grass Deschampsia cespitosa showed even slightly better results than the model for all graminoids (n = 16, R2 = 0.93, RMSEP = 0.015). We show for the first time that NIRS is applicable for determining plant Si concentration across a range of plant species and growth forms, and represents a time- and cost-effective alternative to the chemical Si analysis methods. As NIRS can be applied concurrently to a range of plant organic constituents, it opens up unprecedented research possibilities for studying interrelations between Si and other plant compounds in vegetation, and for addressing the role of Si in ecosystems across a range of Si

  20. Technique for examining biological materials using diffuse reflectance spectroscopy and the kubelka-munk function

    DOEpatents

    Alfano, Robert R.; Yang, Yuanlong

    2003-09-02

    Method and apparatus for examining biological materials using diffuse reflectance spectroscopy and the Kubelka-Munk function. In one aspect, the method is used to determine whether a tissue sample is cancerous or not and comprises the steps of (a) measuring the diffuse reflectance from the tissue sample at a first wavelength and at a second wavelength, wherein the first wavelength is a wavelength selected from the group consisting of 255-265 nm and wherein the second wavelength is a wavelength selected from the group consisting of 275-285 nm; (b) using the Kubelka-Munk function to transform the diffuse reflectance measurement obtained at the first and second wavelengths; and (c) comparing a ratio or a difference of the transformed Kubelka-Munk measurements at the first and second wavelengths to appropriate standards determine whether or not the tissue sample is cancerous. One can use the spectral profile of KMF between 250 nm to 300 nm to determine whether or not the tissue sample is cancerous or precancerous. According to the value at the first and second wavelengths determine whether or not the malignant tissue is invasive or mixed invasive and in situ or carcinoma in situ.

  1. Optimally designed narrowband guided-mode resonance reflectance filters for mid-infrared spectroscopy

    PubMed Central

    Liu, Jui-Nung; Schulmerich, Matthew V.; Bhargava, Rohit; Cunningham, Brian T.

    2011-01-01

    An alternative to the well-established Fourier transform infrared (FT-IR) spectrometry, termed discrete frequency infrared (DFIR) spectrometry, has recently been proposed. This approach uses narrowband mid-infrared reflectance filters based on guided-mode resonance (GMR) in waveguide gratings, but filters designed and fabricated have not attained the spectral selectivity (≤ 32 cm−1) commonly employed for measurements of condensed matter using FT-IR spectroscopy. With the incorporation of dispersion and optical absorption of materials, we present here optimal design of double-layer surface-relief silicon nitride-based GMR filters in the mid-IR for various narrow bandwidths below 32 cm−1. Both shift of the filter resonance wavelengths arising from the dispersion effect and reduction of peak reflection efficiency and electric field enhancement due to the absorption effect show that the optical characteristics of materials must be taken into consideration rigorously for accurate design of narrowband GMR filters. By incorporating considerations for background reflections, the optimally designed GMR filters can have bandwidth narrower than the designed filter by the antireflection equivalence method based on the same index modulation magnitude, without sacrificing low sideband reflections near resonance. The reported work will enable use of GMR filters-based instrumentation for common measurements of condensed matter, including tissues and polymer samples. PMID:22109445

  2. Optimally designed narrowband guided-mode resonance reflectance filters for mid-infrared spectroscopy.

    PubMed

    Liu, Jui-Nung; Schulmerich, Matthew V; Bhargava, Rohit; Cunningham, Brian T

    2011-11-21

    An alternative to the well-established Fourier transform infrared (FT-IR) spectrometry, termed discrete frequency infrared (DFIR) spectrometry, has recently been proposed. This approach uses narrowband mid-infrared reflectance filters based on guided-mode resonance (GMR) in waveguide gratings, but filters designed and fabricated have not attained the spectral selectivity (≤ 32 cm(-1)) commonly employed for measurements of condensed matter using FT-IR spectroscopy. With the incorporation of dispersion and optical absorption of materials, we present here optimal design of double-layer surface-relief silicon nitride-based GMR filters in the mid-IR for various narrow bandwidths below 32 cm(-1). Both shift of the filter resonance wavelengths arising from the dispersion effect and reduction of peak reflection efficiency and electric field enhancement due to the absorption effect show that the optical characteristics of materials must be taken into consideration rigorously for accurate design of narrowband GMR filters. By incorporating considerations for background reflections, the optimally designed GMR filters can have bandwidth narrower than the designed filter by the antireflection equivalence method based on the same index modulation magnitude, without sacrificing low sideband reflections near resonance. The reported work will enable use of GMR filters-based instrumentation for common measurements of condensed matter, including tissues and polymer samples. © 2011 Optical Society of America

  3. Selective equal-spin Andreev reflections induced by Majorana fermions.

    PubMed

    He, James J; Ng, T K; Lee, Patrick A; Law, K T

    2014-01-24

    In this work, we find that Majorana fermions induce selective equal spin Andreev reflections (SESARs), in which incoming electrons with certain spin polarization in the lead are reflected as counterpropagating holes with the same spin. The spin polarization direction of the electrons of this Andreev reflected channel is selected by the Majorana fermions. Moreover, electrons with opposite spin polarization are always reflected as electrons with unchanged spin. As a result, the charge current in the lead is spin polarized. Therefore, a topological superconductor which supports Majorana fermions can be used as a novel device to create fully spin-polarized currents in paramagnetic leads. We point out that SESARs can also be used to detect Majorana fermions in topological superconductors.

  4. Reflectance spectroscopy in planetary science: Review and strategy for the future

    NASA Technical Reports Server (NTRS)

    Mccord, Thomas B. (Editor)

    1987-01-01

    Reflectance spectroscopy is a remote sensing technique used to study the surfaces and atmospheres of solar system bodies. It provides first-order information on the presence and amounts of certain ions, molecules, and minerals on a surface or in an atmosphere. Reflectance spectroscopy has become one of the most important investigations conducted on most current and planned NASA Solar System Exploration Program space missions. This book reviews the field of reflectance spectroscopy, including information on the scientific technique, contributions, present conditions, and future directions and needs.

  5. Tethered bilayer lipid membranes studied by simultaneous attenuated total reflectance infrared spectroscopy and electrochemical impedance spectroscopy

    PubMed Central

    Erbe, Andreas; Bushby, Richard J.; Evans, Stephen D.; Jeuken, Lars J. C.

    2013-01-01

    The formation of tethered lipid bilayer membranes (tBLMs) from unilamelar vesicles of egg yolk phosphatidylcholine (EggPC) on mixed self–assembled monolayers (SAMs) from varying ratios of 6-mercaptohexanol and EO3Cholesteryl on gold has been monitored by simultaneous attenuated total reflectance fourier transform infrared (ATR–FTIR) spectroscopy and electrochemical impedance spectroscopy (EIS). The influence of the lipid orientation (and hence the anisotropy) of lipids on a gold film on the dichroic ratio was studied by simulations of spectra with a matrix method for anisotropic layers. It is shown that for certain tilt angles of the dielectric tensor of the adsorbed anisotropic layer dispersive and negative absorption bands are possible. The experimental data indicates that the structure of the assemblies obtained varies with varying SAM composition. On SAMs with a high content of EO3Cholesteryl, tBLMs with reduced fluidity are formed. For SAMs with high content of 6-mercaptohexanol, the results are consistent with the adsorption of flattened vesicles, while spherical vesicles have been found in a small range of surface compositions. The kinetics of the adsorption process is consistent with the assumption of spherical vesicles as long–living intermediates for surfaces of high 6-mercaptohexanol content. No long–living spherical vesicles have been detected for surfaces with large fraction of EO3Cholesteryl tethers. The observed differences between the surfaces suggest that for the formation of tBLMs (unlike supported BLMs) no critical surface coverage of vesicles is needed prior to lipid bilayer formation. PMID:17388505

  6. The view of AGN-host alignment via reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Middleton, Matthew J.; Parker, Michael L.; Reynolds, Christopher S.; Fabian, Andrew C.; Lohfink, Anne M.

    2016-04-01

    The fuelling of active galactic nuclei (AGN) - via material propagated through the galactic disc or via minor mergers - is expected to leave an imprint on the alignment of the sub-pc disc relative to the host galaxy's stellar disc. Determining the inclination of the inner disc usually relies on the launching angle of the jet; here instead we use the inclination derived from reflection fits to a sample of AGN. We determine the distorting effect of unmodelled Fe XXV/XXVI features and, via extensive simulations, determine the difference in disc inclination resulting from the use of RELXILL compared to REFLIONX. We compare inner disc inclinations to those for the host galaxy stellar disc derived from the Hubble formula and, via Monte Carlo simulations, find a strong lack of a correlation (at ≫5σ) implying either widespread feeding via mergers if we assume the sample to be homogeneous, or that radiative disc warps are distorting our view of the emission. However, we find that by removing a small (˜1/5) subset of AGN, the remaining sample is consistent with random sampling of an underlying 1:1 correlation (at the 3σ level). A heterogenous sample would likely imply that our view is not dominated by radiative disc warps but instead by different feeding mechanisms with the majority consistent with coplanar accretion (although this may be the result of selection bias), whilst a smaller but not insignificant fraction may have been fuelled by minor mergers in the recent history of the host galaxy.

  7. Oblique polarized reflectance spectroscopy for depth sensitive measurements in the epithelial tissue

    NASA Astrophysics Data System (ADS)

    Jimenez, Maria K.; Fradkin, Leonid; Nieman, Linda T.; Lam, Sylvia; Poh, Catherine; Sokolov, Konstantin

    2013-02-01

    Optical spectroscopy has shown potential as a tool for precancer detection by discriminating alterations in the optical properties within epithelial tissues. Identifying depth-dependent alterations associated with the progression of epithelial cancerous lesions can be especially challenging in the oral cavity due to the variable thickness of the epithelium and the presence of keratinization. Optical spectroscopy of epithelial tissue with improved depth resolution would greatly assist in the isolation of optical properties associated with cancer progression. Here, we report a fiber optic probe for oblique polarized reflectance spectroscopy (OPRS) that is capable of depth sensitive detection by combining the following three approaches: multiple beveled fibers, oblique collection geometry, and polarization gating. We analyze how probe design parameters are related to improvements in collection efficiency of scattered photons from superficial tissue layers and to increased depth discrimination within epithelium. We have demonstrated that obliquely-oriented collection fibers increase both depth selectivity and collection efficiency of scattering signal. Currently, we evaluate this technology in a clinical trial of patients presenting lesions suspicious for dysplasia or carcinoma in the oral cavity. We use depth sensitive spectroscopic data to develop automated algorithms for analysis of morphological and architectural changes in the context of the multilayer oral epithelial tissue. Our initial results show that OPRS has the potential to improve the detection and monitoring of epithelial precancers in the oral cavity.

  8. Reflectance spectroscopy: quantitative analysis techniques for remote sensing applications.

    USGS Publications Warehouse

    Clark, R.N.; Roush, T.L.

    1984-01-01

    Several methods for the analysis of remotely sensed reflectance data are compared, including empirical methods and scattering theories, both of which are important for solving remote sensing problems. The concept of the photon mean path length and the implications for use in modeling reflectance spectra are presented.-from Authors

  9. Feasibility of quantitative diffuse reflectance spectroscopy for targeted measurement of renal ischemia during laparoscopic partial nephrectomy.

    PubMed

    Goel, Utsav O; Maddox, Michael M; Elfer, Katherine N; Dorsey, Philip J; Wang, Mei; McCaslin, Ian Ross; Brown, J Quincy; Lee, Benjamin R

    2014-01-01

    Reduction of warm ischemia time during partial nephrectomy (PN) is critical to minimizing ischemic damage and improving postoperative kidney function, while maintaining tumor resection efficacy. Recently, methods for localizing the effects of warm ischemia to the region of the tumor via selective clamping of higher-order segmental artery branches have been shown to have superior outcomes compared with clamping the main renal artery. However, artery identification can prolong operative time and increase the blood loss and reduce the positive effects of selective ischemia. Quantitative diffuse reflectance spectroscopy (DRS) can provide a convenient, real-time means to aid in artery identification during laparoscopic PN. The feasibility of quantitative DRS for real-time longitudinal measurement of tissue perfusion and vascular oxygenation in laparoscopic nephrectomy was investigated in vivo in six Yorkshire swine kidneys (n=three animals ). DRS allowed for rapid identification of ischemic areas after selective vessel occlusion. In addition, the rates of ischemia induction and recovery were compared for main renal artery versus tertiary segmental artery occlusion, and it was found that the tertiary segmental artery occlusion trends toward faster recovery after ischemia, which suggests a potential benefit of selective ischemia. Quantitative DRS could provide a convenient and fast tool for artery identification and evaluation of the depth, spatial extent, and duration of selective tissue ischemia in laparoscopic PN.

  10. Feasibility of quantitative diffuse reflectance spectroscopy for targeted measurement of renal ischemia during laparoscopic partial nephrectomy

    NASA Astrophysics Data System (ADS)

    Goel, Utsav O.; Maddox, Michael M.; Elfer, Katherine N.; Dorsey, Philip J.; Wang, Mei; McCaslin, Ian Ross; Brown, J. Quincy; Lee, Benjamin R.

    2014-10-01

    Reduction of warm ischemia time during partial nephrectomy (PN) is critical to minimizing ischemic damage and improving postoperative kidney function, while maintaining tumor resection efficacy. Recently, methods for localizing the effects of warm ischemia to the region of the tumor via selective clamping of higher-order segmental artery branches have been shown to have superior outcomes compared with clamping the main renal artery. However, artery identification can prolong operative time and increase the blood loss and reduce the positive effects of selective ischemia. Quantitative diffuse reflectance spectroscopy (DRS) can provide a convenient, real-time means to aid in artery identification during laparoscopic PN. The feasibility of quantitative DRS for real-time longitudinal measurement of tissue perfusion and vascular oxygenation in laparoscopic nephrectomy was investigated in vivo in six Yorkshire swine kidneys (n=three animals). DRS allowed for rapid identification of ischemic areas after selective vessel occlusion. In addition, the rates of ischemia induction and recovery were compared for main renal artery versus tertiary segmental artery occlusion, and it was found that the tertiary segmental artery occlusion trends toward faster recovery after ischemia, which suggests a potential benefit of selective ischemia. Quantitative DRS could provide a convenient and fast tool for artery identification and evaluation of the depth, spatial extent, and duration of selective tissue ischemia in laparoscopic PN.

  11. Nonlinear infrared spectroscopy free from spectral selection

    PubMed Central

    Paterova, Anna; Lung, Shaun; Kalashnikov, Dmitry A.; Krivitsky, Leonid A.

    2017-01-01

    Infrared (IR) spectroscopy is an indispensable tool for many practical applications including material analysis and sensing. Existing IR spectroscopy techniques face challenges related to the inferior performance and the high cost of IR-grade components. Here, we develop a new method, which allows studying properties of materials in the IR range using only visible light optics and detectors. It is based on the nonlinear interference of entangled photons, generated via Spontaneous Parametric Down Conversion (SPDC). In our interferometer, the phase of the signal photon in the visible range depends on the phase of an entangled IR photon. When the IR photon is traveling through the media, its properties can be found from observations of the visible photon. We directly acquire the SPDC signal with a visible range CCD camera and use a numerical algorithm to infer the absorption coefficient and the refraction index of the sample in the IR range. Our method does not require the use of a spectrometer and a slit, thus it allows achieving higher signal-to-noise ratio than the earlier developed method. PMID:28218302

  12. Nonlinear infrared spectroscopy free from spectral selection

    NASA Astrophysics Data System (ADS)

    Paterova, Anna; Lung, Shaun; Kalashnikov, Dmitry A.; Krivitsky, Leonid A.

    2017-02-01

    Infrared (IR) spectroscopy is an indispensable tool for many practical applications including material analysis and sensing. Existing IR spectroscopy techniques face challenges related to the inferior performance and the high cost of IR-grade components. Here, we develop a new method, which allows studying properties of materials in the IR range using only visible light optics and detectors. It is based on the nonlinear interference of entangled photons, generated via Spontaneous Parametric Down Conversion (SPDC). In our interferometer, the phase of the signal photon in the visible range depends on the phase of an entangled IR photon. When the IR photon is traveling through the media, its properties can be found from observations of the visible photon. We directly acquire the SPDC signal with a visible range CCD camera and use a numerical algorithm to infer the absorption coefficient and the refraction index of the sample in the IR range. Our method does not require the use of a spectrometer and a slit, thus it allows achieving higher signal-to-noise ratio than the earlier developed method.

  13. The reflection-type configuration in the pump-probe scheme of nonlinear polarization spectroscopy

    SciTech Connect

    Gancherenok, I.I.; Lavrinenko, A.V.

    1995-06-01

    An expression allowing one to optimize the polarization and geometric conditions used to observe signals in the reflection-type configuration of the method of nonlinear polarization spectroscopy is derived. 7 refs., 1 fig.

  14. Diffuse reflectance spectroscopy study of in vitro tissue for nasopharyngeal carcinoma diagnosis

    NASA Astrophysics Data System (ADS)

    Xu, Zhihong; Lin, Xueliang; Ge, Xiaosong; Lin, Duo; Huang, Wei

    2016-10-01

    Diffuse reflectance spectroscopy is a non-contact, non-invasive, and low-cost optical technique that provides real-time feedback about the absorptive characteristics and the microstructure properties of biological tissue. This optical technique shows the potential for monitoring metabolic status associated with malignancy transformation. Nasopharyngeal carcinoma (NPC) is the third most frequently diagnosed cancer associated with virus and is the most common male malignancy with a characteristic regional and racial distribution worldwide. This paper investigates the current screening state of nasopharyngeal malignancies and also provides an overview on the applications of diffuse reflectance spectroscopy in the cancer detection. Furthermore, the latest research relevant to the diagnosis of NPC in vitro tissue using diffuse reflectance spectroscopy is introduced. The results of diffuse reflectance spectroscopy are summarized, showing a significant experimental and clinical value for further NPC detection in vivo in the future.

  15. Quantitative assessment of hydrocarbon contamination in soil using reflectance spectroscopy: a "multipath" approach.

    PubMed

    Schwartz, Guy; Ben-Dor, Eyal; Eshel, Gil

    2013-11-01

    that predicting TPH levels at low concentrations in selected soils at high precision levels is viable. Dividing a dataset into training, validation, and test groups affects the modeling process, and different preprocessing methods, alone or in combination, need to be selected based on soil type and PHC type. MPS was found to be a better parameter for selecting the best performing model than ratio of prediction to deviation, yielding models with the same performance but less complicated and more stable. The use of the "all possibilities" system proved to be mandatory for efficient optimal modeling of reflectance spectroscopy data.

  16. Ultraviolet spectroscopy of selected astronomical sources

    NASA Technical Reports Server (NTRS)

    Drilling, J. S.

    1984-01-01

    The birth rates of various kinds of white dwarf progenitors are estimated and the spectra of two very hot O-type white dwarfs are analyzed. The effective temperature of LSE 21 was found to be in excess of 100,000 K. The abundance of iron in the atmospheres of two central stars and numerous very hot O-type subdwarfs was found to be strongly variable. Results obtained by high resolution optical spectroscopy, UBV photometry, and low resolution IUE spectrophotometry for LSS 2018, the central star of the planetary nebulae DS1, are summarized. A planetary nebula surrounding the very hot subdwarf LSS 1362 was discovered. Analysis of results obtained by high resolution optical spectra shows agreement with an effective temperature of 110,000 K derived using low resolution IUE observations.

  17. Reflectance spectroscopy of pigmented cutaneous benign and malignant lesions

    NASA Astrophysics Data System (ADS)

    Borisova, E.; Jeliazkova, Al.; Pavlova, E.; Troyanova, P.; Kundurdjiev, T.; Pavlova, P.; Avramov, L.

    2014-10-01

    For the DRS measurements of skin benign, dysplastic and malignant lesions in vivo we applied halogen lamp (LS-1, OceanOptics Inc, Dunedin, Fl, USA) as a continuous light source in the region of 400-900 nm, optical probe (6+1 fibers) for the delivery of illumination and diffuse reflected light from the skin investigated and microspectrometer USB4000 (OceanOptics Inc., Dunedin, Fl, USA) for a storage and display of the spectra detected. As a diffuse reflectance standard Spectralon® plate was used to calibrate the spectrometer. The reflectance spectra obtained from normal skin in identical anatomic sites of different patients have similar spectral shape features, slightly differ by the reflectance intensity at different wavelengths, depending on the particular patient' skin phototype. One could find diagnostically important spectral features, related to specific intensity changes for a given wavelength due to specific pigments appearance, slope changes by value and sign for the reflectance spectra curves in a specific spectral range, disappearance or manifestation of minima, related to hemoglobin absorption at 410-420 nm, 543, 575 nm. Based on the observed peculiarities multispectral analysis of the reflectance spectra of the different lesions was used and diagnostically specific features are found. Discrimination using the DRS data obtained between benign compound and dermal nevi (45 cases), dysplastic nevi (17 cases) and pigmented malignant melanoma (41 cases) lesions is achieved with a diagnostic accuracy of 96 % for the benign nevi vs. MM, and 90 % for the dysplastic nevi vs. MM.

  18. Magnetically tunable selective reflection of light by heliconical cholesterics.

    PubMed

    Salili, S M; Xiang, J; Wang, H; Li, Q; Paterson, D A; Storey, J M D; Imrie, C T; Lavrentovich, O D; Sprunt, S N; Gleeson, J T; Jákli, A

    2016-10-01

    We present studies of chiral nematic liquid crystals composed of flexible dimer molecules subject to large dc magnetic fields between 0 and 31 T. We observe that these fields lead to selective reflection of light depending on temperature and magnetic field. The band of reflected wavelengths can be tuned from ultraviolet to beyond the IR-C band. A similar effect induced by electric fields has been presented previously, and was explained by a field-induced oblique-heliconical director deformation in accordance with early theoretical predictions. The use of magnetic field here instead of electric field allows precise measurements of some material constants and holds promise for wireless tuning of selective reflection.

  19. Magnetically tunable selective reflection of light by heliconical cholesterics

    NASA Astrophysics Data System (ADS)

    Salili, S. M.; Xiang, J.; Wang, H.; Li, Q.; Paterson, D. A.; Storey, J. M. D.; Imrie, C. T.; Lavrentovich, O. D.; Sprunt, S. N.; Gleeson, J. T.; Jákli, A.

    2016-10-01

    We present studies of chiral nematic liquid crystals composed of flexible dimer molecules subject to large dc magnetic fields between 0 and 31 T. We observe that these fields lead to selective reflection of light depending on temperature and magnetic field. The band of reflected wavelengths can be tuned from ultraviolet to beyond the IR-C band. A similar effect induced by electric fields has been presented previously, and was explained by a field-induced oblique-heliconical director deformation in accordance with early theoretical predictions. The use of magnetic field here instead of electric field allows precise measurements of some material constants and holds promise for wireless tuning of selective reflection.

  20. Select Higher Education Chief Diversity Officers: Roles, Realities, and Reflections

    ERIC Educational Resources Information Center

    Pittard, Lesley-Anne

    2010-01-01

    This naturalistic inquiry sought to obtain the "essence" of select administrative chief diversity officers (CDOs), by exploring their participant profiles, organizational realities, and career reflections. Participants self-identified as their institution's senior most chief executive, were poised executively, and charged to facilitate an…

  1. Select Higher Education Chief Diversity Officers: Roles, Realities, and Reflections

    ERIC Educational Resources Information Center

    Pittard, Lesley-Anne

    2010-01-01

    This naturalistic inquiry sought to obtain the "essence" of select administrative chief diversity officers (CDOs), by exploring their participant profiles, organizational realities, and career reflections. Participants self-identified as their institution's senior most chief executive, were poised executively, and charged to facilitate an…

  2. Determination of styrene-butadiene rubber composition by attenuated total internal reflection infrared spectroscopy

    NASA Astrophysics Data System (ADS)

    Orlov, A. S.; Kiselev, S. A.; Kiseleva, E. A.; Budeeva, A. V.; Mashukov, V. I.

    2013-03-01

    A rapid method for determining the composition of styrene-butadiene rubber using attenuated total internal reflection infrared spectroscopy was proposed. PMR and 13C NMR spectroscopy and infrared transmission spectroscopy were used as absolute techniques for determining the compositions of calibration samples. It was shown that the method was applicable to a wide range of styrene-butadiene rubbers, did not require additional sample preparation, and was easily reproducible.

  3. Tunable near- to mid-infrared pump terahertz probe spectroscopy in reflection geometry

    NASA Astrophysics Data System (ADS)

    Zhang, S. J.; Wang, Z. X.; Dong, T.; Wang, N. L.

    2017-10-01

    Strong-field mid-infrared pump-terahertz (THz) probe spectroscopy has been proven as a powerful tool for light control of different orders in strongly correlated materials. We report the construction of an ultrafast broadband infrared pump-THz probe system in reflection geometry. A two-output optical parametric amplifier is used for generating mid-infrared pulses with GaSe as the nonlinear crystal. The setup is capable of pumping bulk materials at wavelengths ranging from 1.2 μm to 15 μm and beyond, and detecting the subtle, transient photoinduced changes in the reflected electric field of the THz probe at different temperatures. As a demonstration, we present 15 μm pump-THz probe measurements of a bulk EuSbTe3 single crystal. A 0:5% transient change in the reflected THz electric field can be clearly resolved. The widely tuned pumping energy could be used in mode-selective excitation experiments and applied to many strongly correlated electron systems.

  4. Experimental analysis of bruises in human volunteers using radiometric depth profiling and diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Vidovič, Luka; Milanič, Matija; Majaron, Boris

    2015-07-01

    We combine pulsed photothermal radiometry (PPTR) depth profiling with diffuse reflectance spectroscopy (DRS) measurements for a comprehensive analysis of bruise evolution in vivo. While PPTR enables extraction of detailed depth distribution and concentration profiles of selected absorbers (e.g. melanin, hemoglobin), DRS provides information in a wide range of visible wavelengths and thus offers an additional insight into dynamics of the hemoglobin degradation products. Combining the two approaches enables us to quantitatively characterize bruise evolution dynamics. Our results indicate temporal variations of the bruise evolution parameters in the course of bruise self-healing process. The obtained parameter values and trends represent a basis for a future development of an objective technique for bruise age determination.

  5. Quantitative characterization of traumatic bruises by combined pulsed photothermal radiometry and diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Vidovič, Luka; Milanič, Matija; Randeberg, Lise L.; Majaron, Boris

    2015-02-01

    We apply diffuse reflectance spectroscopy (DRS) and pulsed photothermal radiometry (PPTR) for characterization of the bruise evolution process. While DRS provides information in a wide range of visible wavelengths, the PPTR enables extraction of detailed depth distribution and concentration profiles of selected absorbers (e.g. melanin, hemoglobin). In this study, we simulate experimental DRS spectra and PPTR signals using the Monte Carlo technique and focus on characterization of a suitable fitting approach for their analysis. We find inverse Monte Carlo to be superior to the diffusion approximation approach for the inverse analysis of DRS spectra. The analysis is then augmented with information obtainable by the fitting of the PPTR signal. We show that both techniques can be coupled in a combined fitting approach. The combining of two complementary techniques improves the robustness and accuracy of the inverse analysis, enabling a comprehensive quantitative characterization of the bruise evolution dynamics.

  6. Improved depth resolution in near-infrared diffuse reflectance spectroscopy using obliquely oriented fibers

    NASA Astrophysics Data System (ADS)

    Thilwind, Rachel Estelle; 't Hooft, Gert; Uzunbajakava, Natallia E.

    2009-03-01

    We demonstrate a significant improvement of depth selectivity when using obliquely oriented fibers for near-infrared (NIR) diffuse reflectance spectroscopy. This is confirmed by diffuse reflectance measurements of a two-layer tissue-mimicking phantom across the spectral range from 1000 to 1940 nm. The experimental proof is supported by Monte Carlo simulations. The results reveal up to fourfold reduction in the mean optical penetration depth, twofold reduction in its variation, and a decrease in the number of scattering events when a single fiber is oriented at an angle of 60 deg. The effect of reducing the mean optical penetration depth is enhanced by orienting both fibers inwardly. Using outwardly oriented fibers enables more selective probing of deeper layers, while reducing the contribution from surface layers. We further demonstrate that the effect of an inward oblique arrangement can be approximated to a decrease in fiber-to-fiber separation in the case of a perpendicular fiber arrangement. This approximation is valid in the weak- or absorption-free regime. Our results assert the advantages of using obliquely oriented fibers when attempting to specifically address superficial tissue layers, for example, for skin cancer detection, or in noninvasive glucose monitoring. Such flexibility could be further advantageous in a range of minimally invasive applications, including catheter-based interventions.

  7. Doppler-shifted reflections of X rays in beamfoil spectroscopy

    NASA Technical Reports Server (NTRS)

    Bernstein, E. M.; Mcintyre, L. C., Jr.

    1976-01-01

    Carbon foils were positioned at roughly 10 deg to the conventional perpendicular position so that the spectrometer would view the beam on emergence from the foil, with no radiation shielded by a bowed or wrinkled foil or by the foil holder. Extraneous peaks due to reflected radiation were detected in the spectrum obtained with the tilted foil. A large satellite appears longward of the spectral line and is attributed to Doppler-shifted radiation reflected from the foil surface. Special tests arranged to validate the origin of the satellites are described. The relative intensity of the reflected radiation compared with the direct radiation observed is at variance with the relative intensities reported for longer wavelengths. The reasons for this, possible effects of spectrometer geometry, and applications in the investigation or generation of polarization remain to be investigated

  8. Quantitative reflection spectroscopy at the human ocular fundus

    NASA Astrophysics Data System (ADS)

    Hammer, Martin; Schweitzer, Dietrich

    2002-01-01

    A new model of the reflection of the human ocular fundus on the basis of the adding-doubling method, an approximate solution of the radiative transport equation, is described. This model enables the calculation of the concentrations of xanthophyll in the retina, of melanin in the retinal pigment epithelium and the choroid, and of haemoglobin in the choroid from fundus reflection spectra. The concentration values found in 12 healthy subjects are in excellent agreement with published data. In individual cases of pathologic fundus alterations, possible benefits to the ophthalmologic diagnostics are demonstrated.

  9. Mode Selective Excitation Using Coherent Control Spectroscopy

    SciTech Connect

    Singh, Ajay K.; Konradi, Jakow; Materny, Arnulf; Sarkar, Sisir K.

    2008-11-14

    Femtosecond time-resolved coherent anti-Stokes Raman scattering (fs-CARS) gives access to ultrafast molecular dynamics. However, femtosecond laser pulses are spectrally broad and therefore coherently excite several molecular modes. While the temporal resolution is high, usually no mode-selective excitation is possible. This paper demonstrates the feasibility of selectively exciting specific molecular vibrations in solution phase with shaped fs laser excitation using a feedback-controlled optimization technique guided by an evolutionary algorithm. This approach is also used to obtain molecule-specific CARS spectra from a mixture of different substances. The optimized phase structures of the fs pulses are characterized to get insight into the control process. Possible applications of the spectrum control are discussed.

  10. Monitoring bruise age using visible diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    McMurdy, John W.; Duffy, Susan; Crawford, Gregory P.

    2007-02-01

    The ability to determine the age of a bruise of unknown age mechanism is important in matters of domestic and child abuse and forensics. While physicians are asked to make clinical judgment on the age of a bruise using color and tenderness, studies have shown that a physicians estimate is highly inaccurate and in cases no better than chance alone. We present here the temporal progression of reflection spectrum collected from accidentally inflicted contusions in adult and child study participants with a synopsis of the observed phenomena. Reflection spectra collected using a portable fiber optic reflection spectrometer can track the increase in extravasated hemoglobin from trauma caused blood vessel rupture and subsequent removal of this hemoglobin occurring concurrent with an increase in the absorption attributed to the breakdown product bilirubin. We hypothesize that this time dependent pattern can be used to determine the age of an unknown bruise in an individual provided rate constant information for the patient can be determined in a controlled calibration bruise. Using reflection spectra to estimate bruise age can provide a rapid and noninvasive method to improve the ability of physicians in dating the age of a contusion.

  11. [Comparative study of reflectance spectroscopy of women's acupoints around menstruation].

    PubMed

    Jiang, Xing-Hui; Liu, Han-Ping; Guo, Zhou-Yi; Meng, Yao-Yong; Zeng, Chang-Chun; Liu, Song-Hao

    2010-12-01

    Acupoint was reaction of viscera and its optical parameter was an important characteristic of tissue. In the present work, in order to discuss specificity of acupuncture on the response of qi and blood in human body, we compared the diffuse reflectance of Taichong (LV3), Taibai (SP3), and Chongyang (ST42) before, during and after menstruation. All the acupoints had the same shape of the spectrum and troughs were all at 423.16, 544.06 and 577.47 nm. The values of reflectance during menstruation were greater than before and after menstruation, especially for SP3 and ST42 (P < 0.05). SP3 and ST42 were more sensitive to the changes of qi and blood than LV3, and it was asymmetric and we found no evidence for the imbalance of the left side and right. These results indicated that acupoint diffuse reflectance changed with qi and blood, and that SP3 and ST42 had close relationship with menstruation. Diffuse reflectance may be possibly used in the quantitative analysis of qi and blood.

  12. Determining Water Content of Geologic Materials Using Reflectance Spectroscopy

    NASA Astrophysics Data System (ADS)

    Milliken, R. E.; Mustard, J. F.

    2004-03-01

    TGA data and reflectance spectra are used to track changes in water absorptions as a function of absolute water content. Calculating band depth areas of absorptions in VIS-NIR data may prove useful for quantifying the water content of Mars' surface.

  13. ChemCam Passive Reflectance Spectroscopy at Gale Crater, Mars

    NASA Astrophysics Data System (ADS)

    Johnson, J. R.; Bell, J. F.; Cloutis, E.; Bender, S.; Blaney, D. L.; Ehlmann, B. L.; Gasnault, O.; Kinch, K. M.; Le Mouelic, S.; Rice, M. S.; Wiens, R. C.; DeFlores, L.; Team, M.

    2013-12-01

    The Laser-Induced Breakdown Spectrometer (LIBS) portion of the ChemCam instrument on the Mars Science Laboratory Curiosity rover uses 3 dispersive spectrometers to cover the ultraviolet (240-342 nm), visible (382-469 nm) and visible/near-infrared (474-906 nm) spectral regions at high spectral (<0.5nm) and spatial (0.65mrad) resolution. In active LIBS mode, light emitted from a laser-generated plasma is dispersed onto these spectrometers and used to detect elemental emission lines. Typical observations include 3 msec-exposure 'dark' spectra (acquired with the LIBS laser off) used to remove the background signal from the LIBS measurement. Similar 'passive' observations of the ChemCam calibration target holder can be made at similar times of day and at identical exposure times (to minimize variations from dark current). Because this target exhibits ~95% flat reflectance in the ~400-900 nm region, radiance spectra ratios (surface/calibration target) can be normalized to known calibration target lab spectra to produce relative reflectance spectra (400-900 nm) with an estimated accuracy of 10-20%. Initial results replicated the known spectral shape and overall reflectance values of the ChemCam calibration targets and green color chip on the Mastcam calibration target. Dust contamination was evident, although dust on the ChemCam calibration targets is minimized by their tilted placement on the rover deck. All ChemCam targets that were sunlit during LIBS acquisition (~80% of all measurements) provide 'dark' spectra for which relative reflectance spectra can be obtained. Owing to the dusty nature of the Gale landing sites, passive spectra observed to date exhibit spectral shapes indicative of ferric phases, similar to spectra of palagonitic soils. Most spectra are bracketed in reflectance by typical 'bright' and 'dark' spectra from the OMEGA and CRISM orbital spectrometers. Preliminary Mastcam reflectance spectra are similar, providing additional confidence regarding the

  14. [Rapid determination of fatty acids in soybean oils by transmission reflection-near infrared spectroscopy].

    PubMed

    Song, Tao; Zhang, Feng-ping; Liu, Yao-min; Wu, Zong-wen; Suo, You-rui

    2012-08-01

    In the present research, a novel method was established for determination of five fatty acids in soybean oil by transmission reflection-near infrared spectroscopy. The optimum conditions of mathematics model of five components (C16:0, C18:0, C18:1, C18:2 and C18:3) were studied, including the sample set selection, chemical value analysis, the detection methods and condition. Chemical value was analyzed by gas chromatography. One hundred fifty eight samples were selected, 138 for modeling set, 10 for testing set and 10 for unknown sample set. All samples were placed in sample pools and scanned by transmission reflection-near infrared spectrum after sonicleaning for 10 minute. The 1100-2500 nm spectral region was analyzed. The acquisition interval was 2 nm. Modified partial least square method was chosen for calibration mode creating. Result demonstrated that the 1-VR of five fatty acids between the reference value of the modeling sample set and the near infrared spectrum predictive value were 0.8839, 0.5830, 0.9001, 0.9776 and 0.9596, respectively. And the SECV of five fatty acids between the reference value of the modeling sample set and the near infrared spectrum predictive value were 0.42, 0.29, 0.83, 0.46 and 0.21, respectively. The standard error of the calibration (SECV) of five fatty acids between the reference value of testing sample set and the near infrared spectrum predictive value were 0.891, 0.790, 0.900, 0.976 and 0.942, respectively. It was proved that the near infrared spectrum predictive value was linear with chemical value and the mathematical model established for fatty acids of soybean oil was feasible. For validation, 10 unknown samples were selected for analysis by near infrared spectrum. The result demonstrated that the relative standard deviation between predict value and chemical value was less than 5.50%. That was to say that transmission reflection-near infrared spectroscopy had a good veracity in analysis of fatty acids of soybean oil.

  15. Reflection Electron Energy Loss Spectroscopy of Iron Monosilicide

    NASA Astrophysics Data System (ADS)

    Parshin, A. S.; Igumenov, A. Yu.; Mikhlin, Yu. L.; Pchelyakov, O. P.; Zhigalov, V. S.

    2017-02-01

    X-ray photoelectron spectra, reflection electron energy loss spectra, and inelastic electron scattering cross section spectra of iron monosilicide FeSi are investigated. It is shown that the spectra of inelastic electron scattering cross section have advantages over the reflection electron energy loss spectra in studying the processes of electron energy losses. An analysis of the fine structure of the inelastic electron scattering cross section spectra allows previously unresolved peaks to be identified and their energy, intensity, and nature to be determined. The difference between energies of fitting loss peaks in the spectra of inelastic electron scattering cross section of FeSi and pure Fe are more substantial than the chemical shifts in X-ray photoelectron spectra, which indicates the possibility of application of the fine structure of the spectra of inelastic electron scattering cross section for elemental analysis.

  16. Microwave Reflection Spectroscopy of a Two-Dimensional Electron Gas

    NASA Astrophysics Data System (ADS)

    Zhang, Jie; Liu, Ruiyuan; Du, Lingjie; Du, Rui-Rui; Pfeiffer, Loren; West, Ken

    Cyclotron resonance (CR) is a standard method to determine the carrier effective mass in two-dimensional electron systems, typically by measuring/analyzing the absorption or transmission signal. Here we report a microwave spectrometer utilizing the reflection signal. In our experiment setup based on a top-loading helium3 cryostat and a superconducting solenoid, the microwave (up to 40GHz) is sent down via a coax cable to the sample surface, and the reflection signal is then collected by the same cable and fed upward to a directional coupler, and being detected. We demonstrate the applicability of the spectrometer by measuring the CR of high-mobility electrons or holes in GaAs/AlGaAs quantum wells. The construction of spectrometer, preliminary data, and brief discussions will be presented. The work at Rice was supported by Welch Foundation Grant C-1682.

  17. Multilayered film monitoring using terahertz reflective time-domain spectroscopy

    NASA Astrophysics Data System (ADS)

    Choi, Jindoo; Kwon, Won Sik; Kim, Kyung-Soo; Kim, Soohyun

    2015-07-01

    We present qualitative monitoring of multilayered films by noninvasive investigation in the terahertz frequencies. Three multilayered films composed of marine paint are characterized in reflective, non-orthogonal measurements in ambient atmosphere. The spectra of the constituent marine paint layers EH2350, Interthane 989, BEA777, and ENA300 present sufficient spectral information for effective monitoring of the multilayered structures. Our experimental findings show promise in noninvasive monitoring of layered structures in realistic industrial evaluation applications.

  18. Optical characterization of volcanic ash using diffuse reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Bravo, D. Kelly; Falcón, Nelsón; Narea, Freddy J.; Muñoz, Rafael A.; Muñoz, Aaron A.

    2013-11-01

    The determination of the optical parameters are important for remote sensing and aircraft, in this case allow the difference between a cloud composed solely of water and water plus ash. Therefore, this research is intended to determine the optical properties of the ash four active volcanoes, by studying the spectral resolution reflectance interpreting the results in the approximation of Kubelka - Munk equation through the transfer equation radiative. The results allow classifying these ashes depending on their place of origin.

  19. Early detection and differentiation of venous and arterial occlusion in skin flaps using visible diffuse reflectance spectroscopy and autofluorescence spectroscopy

    PubMed Central

    Zhu, Caigang; Chen, Shuo; Chui, Christopher Hoe-Kong; Tan, Bien-Keem; Liu, Quan

    2016-01-01

    Our previous preclinical study demonstrated that both visible diffuse reflectance and autofluorescence spectroscopy, each of which yields a different set of physiological information, can predict skin flap viability with high accuracy in a MacFarlane rat dorsal skin flap model. In this report, we further evaluated our technique for the early detection and differentiation of venous occlusion and arterial occlusion in a rat groin flap model. We performed both diffuse reflectance and autofluorescence measurements on the skin flap model and statistically differentiated between flaps with and without occlusions as well as between flaps with venous occlusion and those with arterial occlusion based on these non-invasive optical measurements. Our preliminary results suggested that visible diffuse reflectance and autofluorescence spectroscopy can be potentially used clinically to detect both venous and arterial occlusion and differentiate one from the other accurately at an early time point. PMID:26977363

  20. Early detection and differentiation of venous and arterial occlusion in skin flaps using visible diffuse reflectance spectroscopy and autofluorescence spectroscopy.

    PubMed

    Zhu, Caigang; Chen, Shuo; Chui, Christopher Hoe-Kong; Tan, Bien-Keem; Liu, Quan

    2016-02-01

    Our previous preclinical study demonstrated that both visible diffuse reflectance and autofluorescence spectroscopy, each of which yields a different set of physiological information, can predict skin flap viability with high accuracy in a MacFarlane rat dorsal skin flap model. In this report, we further evaluated our technique for the early detection and differentiation of venous occlusion and arterial occlusion in a rat groin flap model. We performed both diffuse reflectance and autofluorescence measurements on the skin flap model and statistically differentiated between flaps with and without occlusions as well as between flaps with venous occlusion and those with arterial occlusion based on these non-invasive optical measurements. Our preliminary results suggested that visible diffuse reflectance and autofluorescence spectroscopy can be potentially used clinically to detect both venous and arterial occlusion and differentiate one from the other accurately at an early time point.

  1. Diffuse reflectance spectroscopy of pre- and post-treated oral submucous fibrosis: an in vivo study

    NASA Astrophysics Data System (ADS)

    Sivabalan, S.; Ponranjini Vedeswari, C.; Jayachandran, S.; Koteeswaran, D.; Pravda, C.; Aruna, P.; Ganesan, S.

    2010-02-01

    Oral submucous fibrosis (OSF) is a high risk precancerous condition characterized by changes in the connective tissue fibers of the lamina propria and deeper parts leading to stiffness of the mucosa and restricted mouth opening, fibrosis of the lining mucosa of the upper digestive tract involving the oral cavity, oro- and hypo-pharynx and the upper two-thirds of the oesophagus. Optical reflectance measurements have been used to extract diagnostic information from a variety of tissue types, in vivo. We apply diffuse reflectance spectroscopy to quantitatively monitor tumour response to chemotherapy. Twenty patients with submucous fibrosis were diagnosed with diffuse reflectance spectroscopy and treated with the chemotherapy drug, Dexamethasone sodium phosphate and Hyaluronidase injection for seven weeks and after the treatment they were again subjected to the diffuse reflectance spectroscopy. The major observed spectral alterations on pre and post treated submucous fibrosis is an increase in the diffuse reflectance from 450 to 600 nm. Normal mucosa has showed higher reflectance when compared to the pre and post-treated cases. The spectral changes were quantified and correlated to conventional diagnostic results viz., maximum mouth opening, tongue protrusion and burning sensation. The results of this study suggest that the diffuse reflectance spectroscopy may also be considered as complementary optical techniques to monitor oral tissue transformation.

  2. Understanding the composition of the lunar mare through reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Denevi, Brett Wilcox

    2007-08-01

    In order to quantify the spectral behavior of maturity variations in the mare, spectral trends of nearly 10,000 craters in six mare regions are examined. Radiative transfer theory is used to model these trends in order to better understand their causes. The maturity trends are confirmed to be more parallel than radial as previously suggested, and this fact is exploited to develop a new algorithm for determination of iron content in mare regions. This new mare iron algorithm better compensates for maturity than previous methods, and uncertainties due to maturity variations are less than 0.5 wt% FeO. Measured optical constants of synthetic glasses of lunar-like compositions are used to predict the optical constants of any glass of an arbitrary combination of FeO and TiO 2 content. These optical constants are employed along with radiative transfer theory to determine composition from telescopic spectra of three regional lunar pyroclastic deposits which are likely to contain large amounts of glass: the Aristarchus Plateau, Mare Humorum, and Sulpicius Gallus. The imaginary coefficient of the complex index of refraction ( k ) is derived from reflectance spectra of 30 pyroxenes. Modified Gaussian modeling is applied to these k spectra to obtain two continuum parameters and nine Gaussian parameters that describe the 1, 2, and 1.2 mm crystal field absorptions. Multiple regression results indicate that the continuum and Gaussian parameters are well predicted by pyroxene FeO and CaO contents; thus, a method to predict a complete pyroxene k spectrum from its FeO and CaO concentrations is developed. The ability of radiative transfer modeling to reproduce reflectance spectra of known composition, and extract compositional information from reflectance spectra, is examined. This model is tested using spectra of mineral mixtures, nine lunar mare soil samples studied by the Lunar Soil Characterization Consortium, and the Apollo 11 landing site. The model is able to accurately

  3. Study of electronic transitions by using attenuated total reflectance spectroscopy in the far-UV region

    NASA Astrophysics Data System (ADS)

    Morisawa, Yusuke; Tachibana, Shin; Ehara, Masahiro; Ozaki, Yukihiro

    2016-09-01

    The wavelength region shorter than 200 nm, far-ultraviolet (FUV) region, is very rich in information about the electronic states and structure of a molecule. Since the molar absorption coefficient is very high ( 105 mol-1 dm3 cm-1) in the FUV region, the electronic states and structure mainly for gas molecules has been investigated for a long time. On the other hand, as to molecules in the condensed phase transmittance spectra could not measure because of high molecular density, and reflection spectroscopy has been used to observe spectra of solid samples in the FUV region. However, for liquid samples generally either absorption spectroscopy or specular reflection spectroscopy was difficult to observe. Accordingly, FUV spectroscopy for liquid samples has been a relatively undeveloped research area. To solve the above difficulties of FUV spectroscopy we have recently developed a totally new UV spectrometer based on attenuated total reflection (ATR) that enables us to measure spectra of liquid and solid samples in the 140-280 nm region. This paper shows the studies by the attenuated total reflection far-ultraviolet (ATR-FUV) spectroscopy. These investigations elucidate the electronic structure and electronic transition in the FUV region for molecules such as n- and branched alkanes, alcohols, ketones, amides, and nylons in the liquid or solid phase. The consistent assignments were performed with a help of quantum chemical calculation.

  4. Algorithm for automated selection of application-specific fiber-optic reflectance probes

    PubMed Central

    Gomes, Andrew J.

    2013-01-01

    Abstract. Several optical techniques and fiber-optic probe systems have been designed to measure the optical properties of tissue. While a wide range of options is often beneficial, it poses a problem to investigators selecting which method to use for their biomedical application of interest. We present a methodology to optimally select a probe that matches the application requirements. Our method is based both on matching a probe’s mean sampling depth with the optimal diagnostic depth of the clinical application and on choosing a probe whose interrogation depth and path length is the least sensitive to alterations in the target medium’s optical properties. Satisfying these requirements ensures that the selected probe consistently assesses the relevant tissue volume with minimum variability. To aid in probe selection, we have developed a publicly available graphical user interface that takes the desired sampling depth and optical properties of the medium as its inputs and automatically ranks different techniques in their ability to robustly target the desired depth. Techniques investigated include single fiber spectroscopy, differential path length spectroscopy, polarization-gating, elastic light scattering spectroscopy, and diffuse reflectance. The software has been applied to biological case studies. PMID:23455876

  5. Algorithm for automated selection of application-specific fiber-optic reflectance probes

    NASA Astrophysics Data System (ADS)

    Gomes, Andrew J.; Backman, Vadim

    2013-02-01

    Several optical techniques and fiber-optic probe systems have been designed to measure the optical properties of tissue. While a wide range of options is often beneficial, it poses a problem to investigators selecting which method to use for their biomedical application of interest. We present a methodology to optimally select a probe that matches the application requirements. Our method is based both on matching a probe's mean sampling depth with the optimal diagnostic depth of the clinical application and on choosing a probe whose interrogation depth and path length is the least sensitive to alterations in the target medium's optical properties. Satisfying these requirements ensures that the selected probe consistently assesses the relevant tissue volume with minimum variability. To aid in probe selection, we have developed a publicly available graphical user interface that takes the desired sampling depth and optical properties of the medium as its inputs and automatically ranks different techniques in their ability to robustly target the desired depth. Techniques investigated include single fiber spectroscopy, differential path length spectroscopy, polarization-gating, elastic light scattering spectroscopy, and diffuse reflectance. The software has been applied to biological case studies.

  6. Detection of propranolol in pharmaceutical formulations by diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Gotardo, Mara Andréia; Tognolli, João Olímpio; Pezza, Helena Redigolo; Pezza, Leonardo

    2008-04-01

    This paper describes an analytical reflectometric method that has an objective not only the industrial quality control but also to detect possible falsifications and/or adulterations of propranolol in pharmaceutical formulations. The method is based on the diffuse reflectance measurements of the colored product (III) of the spot test reaction between propranolol hydrochloride (I) and 2,6-dichloroquinone-4-chloroimide (II) using filter paper as solid support. Spot test conditions have been investigated using experimental design in order to identify and optimize the critical factors. The factors evaluated were DCQ concentration, propranolol solvent and DCQ solvent. The best reaction conditions were achieved with the addition of 30 μL of propranolol solution in ethanol 35% (v/v) and 30 μL of DCQ solution at 70 mg mL -1 in acetone, in this order. All reflectance measurements were carried out at 500 nm and the linear range was from 8.45 × 10 -4 to 8.45 × 10 -2 mol L -1 ( r = 0.998). The limit of detection was 1.01 × 10 -4 mol L -1. No interference was observed from the assessed excipients and drugs. The method was applied to determine propranolol in commercial brands of pharmaceuticals. The results obtained by the proposed method were favorably compared with those given by the British Pharmacopoeia procedure.

  7. Prediction of Ba, Co and Ni for tropical soils using diffuse reflectance spectroscopy and X-ray fluorescence spectroscopy

    NASA Astrophysics Data System (ADS)

    Arantes Camargo, Livia; Marques Júnior, José; Reynaldo Ferracciú Alleoni, Luís; Tadeu Pereira, Gener; De Bortoli Teixeira, Daniel; Santos Rabelo de Souza Bahia, Angélica

    2017-04-01

    Environmental impact assessments may be assisted by spatial characterization of potentially toxic elements (PTEs). Diffuse reflectance spectroscopy (DRS) and X-ray fluorescence spectroscopy (XRF) are rapid, non-destructive, low-cost, prediction tools for a simultaneous characterization of different soil attributes. Although low concentrations of PTEs might preclude the observation of spectral features, their contents can be predicted using spectroscopy by exploring the existing relationship between the PTEs and soil attributes with spectral features. This study aimed to evaluate, in three geomorphic surfaces of Oxisols, the capacity for predicting PTEs (Ba, Co, and Ni) and their spatial variability by means of diffuse reflectance spectroscopy (DRS) and X-ray fluorescence spectroscopy (XRF). For that, soil samples were collected from three geomorphic surfaces and analyzed for chemical, physical, and mineralogical properties, and then analyzed in DRS (visible + near infrared - VIS+NIR and medium infrared - MIR) and XRF equipment. PTE prediction models were calibrated using partial least squares regression (PLSR). PTE spatial distribution maps were built using the values calculated by the calibrated models that reached the best accuracy using geostatistics. PTE prediction models were satisfactorily calibrated using MIR DRS for Ba, and Co (residual prediction deviation - RPD > 3.0), Vis DRS for Ni (RPD > 2.0) and FRX for all the studied PTEs (RPD > 1.8). DRS- and XRF-predicted values allowed the characterization and the understanding of spatial variability of the studied PTEs.

  8. Using diffuse reflectance spectroscopy (DRS) for qualitative examination of iron minerals formed in a hydromorphic soil

    NASA Astrophysics Data System (ADS)

    Ringer, Marianna; Kiss, Klaudia; Németh, Tibor; Sipos, Péter; Szalai, Zoltán

    2016-04-01

    The method of diffuse reflectance spectroscopy (DRS) allows a large number of measurements in a rapid, non-destructive mode and does not require complex sample preparation. Based on the recorded wavelength-reflectance spectra, the simultaneous investigation of various soil parameters such as colour, mineral composition, organic matter and moisture content is possible. Several publications have presented results of the qualitative and quantitative analysis of iron-oxides containing trivalent iron (primarily hematite, goethite) by DRS. These iron minerals are usually formed in soils and sediments under surface conditions. Nevertheless in the case of hydromorhic soils water saturation can result iron mineral formation in the absence of oxygen. However, the related soil forming process leads to the appearance of ferrous iron-hydroxides (green rust) in the soil profile, in the literature no reference was found discussing the investigation of samples from reduced soil conditions by DRS method. Our aim was to reveal if DRS is suitable to perform qualitative characterization of both ferrous and ferric iron-oxide and hydroxide minerals of waterlogged soils. In the present study samples from a sandy meadow soil (calcic, gleyic Phaeozem ferric, arenic) profile were examined in the laboratory using an UV-Vis-NIR spectrophotometer with a diffuse reflectance attachement. Pedogenic iron minerals were characterized through spectral transformations and by comparison with spectrum database and literature data. The results were compared with data obtained from widely used routine methods. X-ray powder diffraction (XRD) for the determination of mineral composition, X-ray fluorescence spectroscopy (XRF) for total iron content and selective chemical dissolution (SCD) for the amorphous and crystalline iron content were presented. Although iron oxide minerals are usually at low concentrations (approx. 0,1%) or present in a poorly crystalline form, our results show that the presence of

  9. Total reflection X-ray photoelectron spectroscopy as a semiconductor lubricant elemental analysis method

    NASA Astrophysics Data System (ADS)

    Alshehabi, Abbas; Sasaki, Nobuharu; Kawai, Jun

    2015-12-01

    Photoelectron spectra from a typical hard disk storage media device (HDD) were measured at total reflection and non-total reflection at unburnished, acetone-cleaned, and argon-sputtered conditions. F, O, N, and C usually making the upper layer of a typical hard disk medium were detected. Enhancement of the photoelectron emission of the fluorocarbon lubricant was observed at total reflection. Pt and Co were only found by non-total X-ray photoelectron spectroscopy (XPS) because they are constituents of a deeper region than the top and interface regions. Argon-sputtered, ultrasonic acetone-cleaned, and unburnished top layers were compared at total and non-total reflection conditions. Total reflection X-ray photoelectron spectroscopy (TRXPS) is demonstrated to be a powerful tool for storage media lubrication layer chemical state analysis, reliable for industrial quality control application , and reproducible.

  10. Site-selected Auger electron spectroscopy of N2O.

    PubMed

    Bolognesi, Paola; Coreno, Marcello; Avaldi, Lorenzo; Storchi, Loriano; Tarantelli, Francesco

    2006-08-07

    The N 1s Auger spectra for the two nonequivalent N atoms in N2O have been measured via Auger electron-photoelectron coincidence spectroscopy. The site-selected Auger spectra are compared with the normal Auger spectrum and with accurate theoretical calculations accounting for the effects of the dynamics of the nuclei on the energy and linewidth of the Auger bands. Such effects are found to be crucial factors in determining the different band shapes in the site-selected spectra.

  11. Noninvasive particle sizing using camera-based diffuse reflectance spectroscopy.

    PubMed

    Abildgaard, Otto Højager Attermann; Frisvad, Jeppe Revall; Falster, Viggo; Parker, Alan; Christensen, Niels Jørgen; Dahl, Anders Bjorholm; Larsen, Rasmus

    2016-05-10

    Diffuse reflectance measurements are useful for noninvasive inspection of optical properties such as reduced scattering and absorption coefficients. Spectroscopic analysis of these optical properties can be used for particle sizing. Systems based on optical fiber probes are commonly employed, but their low spatial resolution limits their validity ranges for the coefficients. To cover a wider range of coefficients, we use camera-based spectroscopic oblique incidence reflectometry. We develop a noninvasive technique for acquisition of apparent particle size distributions based on this approach. Our technique is validated using stable oil-in-water emulsions with a wide range of known particle size distributions. We also measure the apparent particle size distributions of complex dairy products. These results show that our tool, in contrast to those based on fiber probes, can deal with a range of optical properties wide enough to track apparent particle size distributions in a typical industrial process.

  12. Thermal infrared reflectance and emission spectroscopy of quartzofeldspathic glasses

    USGS Publications Warehouse

    Byrnes, J.M.; Ramsey, M.S.; King, P.L.; Lee, R.J.

    2007-01-01

    This investigation seeks to better understand the thermal infrared (TIR) spectral characteristics of naturally-occurring amorphous materials through laboratory synthesis and analysis of glasses. Because spectra of glass phases differ markedly from their mineral counterparts, examination of glasses is important to accurately determine the composition of amorphous surface materials using remote sensing datasets. Quantitatively characterizing TIR (5-25 ??m) spectral changes that accompany structural changes between glasses and mineral crystals provides the means to understand natural glasses on Earth and Mars. A suite of glasses with compositions analogous to common terrestrial volcanic glasses was created and analyzed using TIR reflectance and emission techniques. Documented spectral characteristics provide a basis for comparison with TIR spectra of other amorphous materials (glasses, clays, etc.). Our results provide the means to better detect and characterize glasses associated with terrestrial volcanoes, as well as contribute toward understanding the nature of amorphous silicates detected on Mars. Copyright 2007 by the American Geophysical Union.

  13. Pronounced effects of additional resistance in Andreev reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Chen, T. Y.; Huang, S. X.; Chien, C. L.

    2010-06-01

    We present a systematic investigation of the additional resistance (RE) , which is an unavoidable consequence of pseudo-four-probe electrical measurements, on the point-contact Andreev reflection (PCAR) spectrum by both modeling and experiments. Instead of considering the total resistance between the two voltage leads across a point contact as a sum of a contact resistance (RC) and a fixed sample resistance (RS) , it is essential to treat the total resistance as a sum of the Andreev resistance RAR and the additional resistance RE , which are, respectively, the resistances affected and unaffected by the Andreev reflection process. We show a detailed formalism of taking RE into account in modeling and demonstrate that the PCAR spectrum can be drastically affected by the presence of RE . Experimentally, we have found that not only RE cannot be readily measured or even estimated, it is in fact different for each contact, depending on the contact resistance and whether the contact is near the purely ballistic regime or the purely diffusive regime. A self-consistent process is necessary to analyze the entire PCAR spectrum, properly normalize the conductance, determine RE , and other parameters including the spin polarization and the superconducting gap for each contact. We determine RE for various contacts on specimens with different resistivity and resolve the causes of RE . For contacts close to the diffusive regime, there are two sources of RE : a dominant contribution which is linearly proportional to the total resistance and a constant value from the sample resistance. We also address the effects of additional resistance when PCAR is administered in the ballistic limit and in the diffusive limit. With the proper treatment of the additional resistance, we demonstrate that PCAR can quantitatively extract essential information of spin polarization and superconducting gap.

  14. Cryogenic Reflectance Spectroscopy in Support of Planetary Missions

    NASA Technical Reports Server (NTRS)

    Dalton, J. B.

    2002-01-01

    Present understanding of planetary composition is based primarily on remotely-sensed data, and in particular upon ultraviolet, visible, and infrared spectroscopy. Spectra acquired by telescopic and spacecraft instruments are compared to laboratory measurements of pure materials in order to identify surface components based on characteristic absorption features. Cryogenic spectral measurements are necessary for the study of worlds beyond the Earth's orbit. While some materials exhibit only small spectral changes as a function of temperature, many others are strongly temperature-dependent. For example, hydrated salts exhibit different spectral behavior under conditions appropriate to Europa than at terrestrial temperatures. The icy satellites of the outer solar system contain significant quantities of volatile ices which do not even exist at standard temperature and pressure (STP). A comprehensive spectral database of ices and minerals covering a wide temperature range will have applications ranging from the study of comets and Kuiper Belt objects to outer planet satellites and the polar regions of Mars. Efforts are presently underway at NASA-Ames to develop capabilities which will contribute to such a database. As spacecraft instruments feature increasing spatial and spectral resolution, appropriate laboratory reference spectra become increasingly critical to accurate interpretation of the spacecraft data.

  15. Pupil diameter reflects uncertainty in attentional selection during visual search

    PubMed Central

    Geng, Joy J.; Blumenfeld, Zachary; Tyson, Terence L.; Minzenberg, Michael J.

    2015-01-01

    Pupil diameter has long been used as a metric of cognitive processing. However, recent advances suggest that the cognitive sources of change in pupil size may reflect LC-NE function and the calculation of unexpected uncertainty in decision processes (Aston-Jones and Cohen, 2005; Yu and Dayan, 2005). In the current experiments, we explored the role of uncertainty in attentional selection on task-evoked changes in pupil diameter during visual search. We found that task-evoked changes in pupil diameter were related to uncertainty during attentional selection as measured by reaction time (RT) and performance accuracy (Experiments 1-2). Control analyses demonstrated that the results are unlikely to be due to error monitoring or response uncertainty. Our results suggest that pupil diameter can be used as an implicit metric of uncertainty in ongoing attentional selection requiring effortful control processes. PMID:26300759

  16. Study on reflection of human skin with liquid paraffin as the penetration enhancer by spectroscopy.

    PubMed

    Chen, Kun; Liang, Yanmei; Zhang, Yuan

    2013-10-01

    Optical clearing agents can improve tissue optical transmittance by reducing the diffuse reflection. The reflection on in vivo human skin before and after applying anhydrous glycerol and 30 to 50% liquid paraffin glycerol mixed solution are investigated in this paper. From their visible and near-infrared reflection spectroscopy, all of their diffuse reflections are reduced after applying the agents. It is found that the three mixed solutions show stronger effect than that of anhydrous glycerol. These results further prove liquid paraffin can enhance the percutaneous penetration of glycerol and take synergistically optical clearing effect with glycerol over visible and near-infrared wave bands.

  17. Characterization of iron deficiency symptoms in grapevine (Vitis spp.) leaves by reflectance spectroscopy.

    PubMed

    Rustioni, Laura; Grossi, Daniele; Brancadoro, Lucio; Failla, Osvaldo

    2017-09-01

    The work aims at the description of the iron deficiency symptoms in grapevine leaves by reflectance spectroscopy at the plant and leaf levels. 5 genotypes of Vitis spp. were selected and grown in hydroponic conditions with and without iron supply. 450 spectra were collected among basal, young and apical leaves, as well as veins and interveinal areas. Iron deficiency produced significant and characteristic modifications in the pigment accumulation, proportion and distribution in plants. Basal leaves resulted to have higher concentrations of photosynthetic pigments in stressed plants with respect to the control, probably due to compensation effects. Iron deficient plants had lower chlorophyll concentrations in young and apical leaves. In the apical zone, also the relative composition of pigments appeared to be modified, explaining the reddish-yellowish apex appearance of iron deficient vines. Finally, the pigment distribution along the shoot characterized the symptoms, as well as the spectral variations among veins and interveinal areas. These results could support future applications in vineyard management (e.g.: symptom identification and detection; precision fertilization) as well as breeding programs for new rootstock selections (e.g.: fast screenings of seedlings). Copyright © 2017 Elsevier Masson SAS. All rights reserved.

  18. Investigation of select energetic materials by differential reflection spectrometry

    NASA Astrophysics Data System (ADS)

    Fuller, Anna Marie

    The presence of explosive or energetic materials is prevalent in today's world. Terrorists continue to target buildings and mass transit systems with explosive devices. The detection of these energetic materials is necessary to insure national security and welfare. Detection techniques such as X-ray scanners, Raman spectroscopy, Terahertz spectroscopy and ion mobility spectrometry are in current use or development; however, none of these are appropriate for all necessary applications. These techniques include. The present document provides an overview of the current detection techniques and describes a new technique for detecting energetic materials called differential reflection spectrometry (DRS). DRS essentially measures the optical absorption of energetic materials. The use of DRS has led to the discovery of previously unreported optical characteristics for some energetic compounds that are unique to the individual material. These optical characteristics consist of absorption shoulders between 270 and 420 nm, e.g. near 420 nm for 2, 4, 6 trinitrotoluene (TNT). In the presented research, the origin of the differential reflection spectra obtained was investigated using several techniques including UV-Visible spectrophotometry (transmission and reflection) and computer molecular modeling. Experimental DRS spectra of TNT, hexahydro-1,3,5 trinitro-1,3,5 triazine (RDX), octahydro 1,3,5,7-tetranitro-1,3,5,6 tetrazocine (HMX), 18 pentaerythritol tetranitrate (PETN), and 2, 4, 6, n-tetranitro-n-methylaniline (Tetryl) were taken and analyzed. From the experimental results and verification by molecular modeling, it was found that the absorption features observed in the redder region of the UV range (270--420 nm) are due to molecular orbital transitions in the nitro (NO2) groups of the measured explosives. These transitions only occur in specific conditions, such as high concentration solutions and solids, where the normally forbidden transitions are allowed. The unique

  19. Diffuse reflectance spectroscopy: a clinical study of tuberculin skin tests reading

    NASA Astrophysics Data System (ADS)

    Koenig, Anne; Grande, Sophie; Dahel, Karima; Planat-Chrétien, Anne; Poher, Vincent; Goujon, Catherine; Dinten, Jean-Marc

    2013-02-01

    Diffuse reflectance spectroscopy is a technique widely used to determine optical properties of tissues: scattering and absorption coefficients. In this study, we present the development of a low-cost optical instrument usable in a clinical environment based upon the spatially resolved diffuse reflectance spectroscopy approach. This instrument has been used in a clinical study to support the diagnosis of tuberculosis. The idea is to establish a new scanning method for an early detection of inflammation due to a reagent injection, before the onset of visual signs. Results comparing the instrumental and classical clinical readings are presented.

  20. In situ anodization of aluminum surfaces studied by x-ray reflectivity and electrochemical impedance spectroscopy

    SciTech Connect

    Bertram, F. Evertsson, J.; Messing, M. E.; Mikkelsen, A.; Lundgren, E.; Zhang, F.; Pan, J.; Carlà, F.; Nilsson, J.-O.

    2014-07-21

    We present results from the anodization of an aluminum single crystal [Al(111)] and an aluminum alloy [Al 6060] studied by in situ x-ray reflectivity, in situ electrochemical impedance spectroscopy and ex situ scanning electron microscopy. For both samples, a linear increase of oxide film thickness with increasing anodization voltage was found. However, the slope is much higher in the single crystal case, and the break-up of the oxide film grown on the alloy occurs at a lower anodization potential than on the single crystal. The reasons for these observations are discussed as are the measured differences observed for x-ray reflectivity and electrochemical impedance spectroscopy.

  1. A study of muscular tissue of animal origin by reflection-spectroscopy methods

    NASA Astrophysics Data System (ADS)

    Plotnikova, L. V.; Nechiporenko, A. P.; Orekhova, S. M.; Plotnikov, P. P.; Ishevskii, A. L.

    2017-06-01

    A comparative analysis of the spectral characteristics of the surface of muscular tissue of animal origin (pork) and its main components has been performed by the methods of diffuse reflection electronic spectroscopy (DRES) and frustrated total internal reflection IR spectroscopy. The experiments have shown that the application of the DRES method makes it possible to detect more pronounced changes in the surface optical characteristics of muscular tissue and obtain electronic spectra containing information about the component composition of its main parts under successive extraction of sarcoplasmic materials, myofibrillar proteins of the actomyosin complex, and stroma mucopolysaccharides.

  2. [Application of near-infrared diffuse reflectance spectroscopy to the detection and identification of transgenic corn].

    PubMed

    Rui, Yu-kui; Luo, Yun-bo; Huang, Kun-lun; Wang, Wei-min; Zhang, Lu-da

    2005-10-01

    With the rapid development of the GMO, more and more GMO food has been pouring into the market. Much attention has been paid to GMO labeling under the controversy of GMO safety. Transgenic corns and their parents were scanned by continuous wave of near infrared diffuse reflectance spectroscopy range of 12000-4000 cm(-1); the resolution was 4 cm(-1); scanning was carried out for 64 times; BP algorithm was applied for data processing. The GMO food was easily resolved. Near-infrared diffuse reflectance spectroscopy is unpolluted and inexpensive compared with PCR and ELISA, so it is a very promising detection method for GMO food.

  3. Effect of data pretreatment on the noninvasive blood glucose measurement by diffuse reflectance NIR spectroscopy

    NASA Astrophysics Data System (ADS)

    Heise, Herbert M.; Marbach, Ralf

    1994-01-01

    Recent progress in spectroscopy and chemometrics have brought in-vitro blood glucose analysis into clinical reach. Parallel to these efforts noninvasive experiments by NIR- spectroscopy have also been proposed and carried out. A specially designed and optimized accessory for diffuse reflectance measurements in the spectral range of 9000 - 5000 cm-1 was used. The spectral data and reference concentration values were obtained using oral glucose tolerance tests. Calibration results are provided for log(1/R) and single beam spectra. In addition, the effects of smoothing and the use of derivative filtering were evaluated. The best results were achieved by multivariate PLS-modeling with raw data from single beam reflectance spectra.

  4. Reflectance and Emittance of Selected Materials and Coatings

    DTIC Science & Technology

    1975-01-13

    clearly visible. A second source of data (Ref. 6) is pre- sented in Figure 4 for 6061 aluminum, pla-te with a surface condition defined as unpolished ...longer wavelengths tend to be relatively small. The unpolished 6A1-4V specimen is selected as the baseline titauium alloy with properties of a 0... UNPOLISHED u-,J 20 0.3 0.4 U6 1 2 4 6 10 20 WAVEL[ NGT[I, microns .’igure 4. Normal Spectral Reflectance for Alumninmum Alloy 6061 if’in ;., .... - I "" * I I

  5. Reflectance spectroscopy: application of the Kubelka-Munk theory to the rates of photoprocesses of powders.

    PubMed

    Simmons, E L

    1976-04-01

    The Kubelka-Munk theory of reflectance spectroscopy is used to derive an approximate equation that describes the rate of the photoprocess of a powdered sample in terms of the remission function. The equation is compared with one obtained using the particle model theory of diffuse reflectance and with experimental data for the photochemical reaction of powdered K(3)[Fe(C(2)O(4))(3)]-3H(2)O.

  6. Detection and identification of explosive RDX by THz diffuse reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Liu, Hai-Bo; Chen, Yunqing; Bastiaans, Glenn J.; Zhang, X.-C.

    2006-01-01

    The reflection spectrum of the explosive RDX was acquired from a diffuse reflection measurement using a THz time-domain spectroscopy system in combination with a diffuse reflectance accessory. By applying the Kramers-Kronig transform to the reflection spectrum, the absorption spectrum (0.2-1.8 THz) was obtained. It agrees with the result from a transmission measurement and distinguishes RDX from other materials. The effect of the reference spectrum was examined by using both a Teflon pellet and a copper plate as references. The strong absorption of RDX at 0.82 THz allowed it to be identified by the diffuse reflection measurement even when the RDX sample was covered with certain optically opaque materials. Our investigation demonstrates that THz technique is capable of detecting and identifying hidden RDX-related explosives in a diffuse reflection mode, which is crucial for the standoff detection in the real world applications.

  7. Visible and infrared reflectance imaging spectroscopy of paintings: pigment mapping and improved infrared reflectography

    NASA Astrophysics Data System (ADS)

    Delaney, John K.; Zeibel, Jason G.; Thoury, Mathieu; Littleton, Roy; Morales, Kathryn M.; Palmer, Michael; de la Rie, E. René

    2009-07-01

    Reflectance imaging spectroscopy, the collection of images in narrow spectral bands, has been developed for remote sensing of the Earth. In this paper we present findings on the use of imaging spectroscopy to identify and map artist pigments as well as to improve the visualization of preparatory sketches. Two novel hyperspectral cameras, one operating from the visible to near-infrared (VNIR) and the other in the shortwave infrared (SWIR), have been used to collect diffuse reflectance spectral image cubes on a variety of paintings. The resulting image cubes (VNIR 417 to 973 nm, 240 bands, and SWIR 970 to 1650 nm, 85 bands) were calibrated to reflectance and the resulting spectra compared with results from a fiber optics reflectance spectrometer (350 to 2500 nm). The results show good agreement between the spectra acquired with the hyperspectral cameras and those from the fiber reflectance spectrometer. For example, the primary blue pigments and their distribution in Picasso's Harlequin Musician (1924) are identified from the reflectance spectra and agree with results from X-ray fluorescence data and dispersed sample analysis. False color infrared reflectograms, obtained from the SWIR hyperspectral images, of extensively reworked paintings such as Picasso's The Tragedy (1903) are found to give improved visualization of changes made by the artist. These results show that including the NIR and SWIR spectral regions along with the visible provides for a more robust identification and mapping of artist pigments than using visible imaging spectroscopy alone.

  8. Measuring the complex optical conductivity of graphene by Fabry-Pérot reflectance spectroscopy [Determination of the optical index for few-layer graphene by reflectivity spectroscopy

    DOE PAGES

    Ghamsari, Behnood G.; Tosado, Jacob; Yamamoto, Mahito; ...

    2016-09-29

    Here, we have experimentally studied the optical refractive index of few-layer graphene through reflection spectroscopy at visible wavelengths. A laser scanning microscope (LSM) with a coherent supercontinuum laser source measured the reflectivity of an exfoliated graphene flake on a Si/SiO2 substrate, containing monolayer, bilayer and trilayer areas, as the wavelength of the laser was varied from 545nm to 710nm. The complex refractive index of few-layer graphene, n-ik, was extracted from the reflectivity contrast to the bare substrate and the Fresnel reflection theory. Since the SiO2 thickness enters to the modeling as a parameter, it was precisely measured at the locationmore » of the sample. It was found that a common constant optical index cannot explain the wavelength-dependent reflectivity data for single-, double- and three-layer graphene simultaneously, but rather each individual few-layer graphene possesses a unique optical index whose complex values were precisely and accurately determined from the experimental data.« less

  9. Measuring the complex optical conductivity of graphene by Fabry-Pérot reflectance spectroscopy [Determination of the optical index for few-layer graphene by reflectivity spectroscopy

    SciTech Connect

    Ghamsari, Behnood G.; Tosado, Jacob; Yamamoto, Mahito; Fuhrer, Michael S.; Anlage, Steven M.

    2016-09-29

    Here, we have experimentally studied the optical refractive index of few-layer graphene through reflection spectroscopy at visible wavelengths. A laser scanning microscope (LSM) with a coherent supercontinuum laser source measured the reflectivity of an exfoliated graphene flake on a Si/SiO2 substrate, containing monolayer, bilayer and trilayer areas, as the wavelength of the laser was varied from 545nm to 710nm. The complex refractive index of few-layer graphene, n-ik, was extracted from the reflectivity contrast to the bare substrate and the Fresnel reflection theory. Since the SiO2 thickness enters to the modeling as a parameter, it was precisely measured at the location of the sample. It was found that a common constant optical index cannot explain the wavelength-dependent reflectivity data for single-, double- and three-layer graphene simultaneously, but rather each individual few-layer graphene possesses a unique optical index whose complex values were precisely and accurately determined from the experimental data.

  10. Infrared attenuated total reflection (IR-ATR) spectroscopy for detecting drugs in human saliva.

    PubMed

    Hans, Kerstin M-C; Müller, Susanne; Sigrist, Markus W

    2012-06-01

    The consumption of drugs is of great concern worldwide. Various drug tests for humans have been developed but there is no compact and easy-to-use test device available yet for direct semi-quantitative drug testing in the field. We suggest using attenuated total reflection (ATR) infrared spectroscopy as a sensing method to analyze human saliva samples with respect to drugs. In this paper, we present ATR spectra in the infrared range between 2300 and 900 cm(-1) as a first step towards such a device. We emphasize the common drug cocaine and its metabolites and investigate the problems of spectral interferences of selected diluents, masking agents, common medication, and soft drinks. Furthermore, spectra of saliva samples are recorded and a time-dependent change of the spectral signatures after alcohol consumption is presented. To the best of our knowledge, it is the first time that not only spectra of the drug of interest (cocaine) dissolved in water and in saliva but also spectra of interfering compounds possibly present in the saliva sample of a tested subject are discussed. This paper presents the most appropriate spectral range for strong cocaine absorption (including its metabolites) and minimum interference by the investigated substances. This spectral window is found to be between 1800 and 1710 cm(-1). In addition, we demonstrate the feasibility to identify cocaine in saliva at a concentration of 0.020 mg/ml with IR-ATR-spectroscopy without any separation or extraction procedures. For example, this technique could also be applied for drug detection in waste water. Copyright © 2011 John Wiley & Sons, Ltd.

  11. [Study on the global and local calibration methods of tryptophan content in rice by near infrared reflectance spectroscopy].

    PubMed

    Zhang, Bin; Zhang, Da-Peng; Zhang, Wen-Bin; Wang, Ke-Min; Li, Guan; Yao, Ya-Zhen; Wu, Jian-Guo; Shi, Chun-Hai

    2011-01-01

    Tryptophan is one of the essential amino acids in human, and also considered as an important limiting amino acid in rice. Alkali hydrolysis method was used to determine the tryptophan content of 272 representative samples selected from the 1 256 samples in four years. Based on the milled rice flour spectroscopy, by comparing the prediction abilities of the equations with global calibrations and local calibration, the global calibration method with MPLS and the local calibration method were better than others. Their calibration models could be introduced to application because of low standard errors of prediction for both methods (0.007%) and high coefficients of determination (87.1% and 87.4%, respectively). Furthermore, the prediction ability of the equation based on the brown rice spectroscopy could be still used for determination application though their effects were worse than that of the milled rice flour spectroscopy. It was concluded that the equation could be directly used to estimate the content of tryptophan in milled rice, and the technology of near infrared reflectance spectroscopy developed in this study could be applied in selecting breeding materials for higher tryptophan content and in quality control during rice processing.

  12. Reflectance and Thermal Infrared Spectroscopy of Mars: Relationship Between ISM and TES for Compositional Determinations

    NASA Technical Reports Server (NTRS)

    Boyce, Joseph (Technical Monitor); Mustard, John

    2004-01-01

    Reflectance spectroscopy has demonstrated that high albedo surfaces on Mars contain heavily altered materials with some component of hematite, poorly crystalline ferric oxides, and an undefined silicate matrix. The spectral properties of many low albedo regions indicate crystalline basalts containing both low and high calcium pyroxene, a mineralogy consistent with the basaltic SNC meteorites. The Thermal Emission Spectrometer (TES) experiment on the Mars Geochemical Surveyor has acquired critical new data relevant to surface composition and mineralogy, but in a wavelength region that is complementary to reflectance spectroscopy. The essence of the completed research was to analyze TES data in the context of reflectance data obtained by the French ISM imaging spectrometer experiment in 1989. This approach increased our understanding of the complementary nature of these wavelength regions for mineralogic determinations using actual observations of the martian surface. The research effort focused on three regions of scientific importance: Syrtis Major-Isidis Basin, Oxia Palus-Arabia, and Valles Marineris. In each region distinct spatial variations related to reflectance, and in derived mineralogic information and interpreted compositional units were analyzed. In addition, specific science questions related to the composition of volcanics and crustal evolution, soil compositions and pedogenic processes, and the relationship between pristine lithologies and weathering provided an overall science-driven framework for the work. The detailed work plan involved colocation of TES and ISM data, extraction of reflectance and emissivity spectra from areas of known reflectance variability, and quantitative analysis using factor analysis and statistical techniques to determine the degree of correspondence between these different wavelength regions. Identified coherent variations in TES spectroscopy were assessed against known atmospheric effects to validate that the variations

  13. Absorption and Scattering Coefficients: A Biophysical-Chemistry Experiment Using Reflectance Spectroscopy

    ERIC Educational Resources Information Center

    Cordon, Gabriela B.; Lagorio, M. Gabriela

    2007-01-01

    A biophysical-chemistry experiment, based on the reflectance spectroscopy for calculating the absorption and scattering coefficients of leaves is described. The results show that different plants species exhibit different values for both the coefficients because of their different pigment composition.

  14. Analysis of Total Oil and Fatty Acids Composition by Near Infrared Reflectance Spectroscopy in Edible Nuts

    USDA-ARS?s Scientific Manuscript database

    Near Infrared (NIR) Reflectance spectroscopy has established itself as an important tool in quantifying water and oil present in various food materials. It is rapid and nondestructive, easier to use, and does not require processing the samples with corrosive chemicals that would render them non-edib...

  15. Prediction of olive quality using FT-NIR spectroscopy in reflectance and transmittance modes

    USDA-ARS?s Scientific Manuscript database

    The objective of this research was to use FT-NIR spectroscopy to predict the firmness, oil content and color of two olive (Olea europaea L) varieties (‘Ayvalik’ and ‘Gemlik’). Spectral measurements were performed on the intact olives for the wavelengths of 780-2500 nm in reflectance and for 800-1725...

  16. Nondestructive Olive Quality Detection Using FT-NIR Spectroscopy in Reflectance Mode

    USDA-ARS?s Scientific Manuscript database

    Quality features (firmness, oil content and color in terms of hue and chroma) of two olive (Olea europaea L) varieties (‘Ayvalik’ and ‘Gemlik’) were predicted using Fourier transform near-infrared (FT-NIR) spectroscopy. Reflectance measurements of intact olives were performed using a bifurcated fibe...

  17. Absorption and Scattering Coefficients: A Biophysical-Chemistry Experiment Using Reflectance Spectroscopy

    ERIC Educational Resources Information Center

    Cordon, Gabriela B.; Lagorio, M. Gabriela

    2007-01-01

    A biophysical-chemistry experiment, based on the reflectance spectroscopy for calculating the absorption and scattering coefficients of leaves is described. The results show that different plants species exhibit different values for both the coefficients because of their different pigment composition.

  18. Reflectance spectroscopy detects management and landscape differences in soil carbon and nitrogen

    USDA-ARS?s Scientific Manuscript database

    Many studies document the successful calibration of visible and near infrared (VNIR) diffuse reflectance spectroscopy (DRS) to various soil properties. However, few studies have reported on the use of VNIR DRS to detect treatment differences in controlled experiments. Therefore, our objective in thi...

  19. Real time, in-situ temperature monitoring using diffuse reflectance spectroscopy

    SciTech Connect

    Booth, J.L.; Beard, B.T.; Pearsall, T.P.; Wang, Z.Z.; Stevens, J.E.; Blain, M.G.; Meisenheimer, T.L.

    1996-11-01

    Real time temperature measurements have been performed on both GaAs and silicon substrates during wafer processing using a technique based upon diffuse reflectance spectroscopy (DRS). Good temperature resolution ({+-}O.4 {degrees}C) and rapid updates have enabled the process control potential of the device to be demonstrated.

  20. Diffuse Reflectance Spectroscopy of Human Skin Using a Commercial Fiber Optic Spectrometer

    SciTech Connect

    Atencio, J. A. Delgado; Rodriguez, M. Cunill; Montiel, S. Vazquez y; Castro, Jorge; Rodriguez, A. Cornejo; Gutierrez, J. L.; Martinez, F.; Gutierrez, B.; Orozco, E.

    2008-08-11

    Diffuse reflectance spectroscopy is a reliable and easy to implement technique in human tissue characterization. In this work we evaluate the performance of the commercial USB4000 miniature fiber optic spectrometer in the in-vivo measurement of the diffuse reflectance spectra of different healthy skin sites and lesions in a population of 54 volunteers. Results show, that this spectrometer reproduces well the typical signatures of skin spectra over the 400-1000 nm region. Remarkable spectral differences exist between lesions and normal surrounding skin. A diffusion-based model was used to simulate reflectance spectra collected by the optical probe of the system.

  1. Diffuse reflectance spectroscopy and optical polarization imaging of in-vivo biological tissue

    NASA Astrophysics Data System (ADS)

    Mora-Núñez, A.; Castillejos, Y.; García-Torales, G.; Martínez-Ponce, G.

    2013-11-01

    A number of optical techniques have been reported in the scientific literature as accomplishable methodologies to diagnose diseases in biological tissue, for instance, diffuse reflectance spectroscopy (DRS) and optical polarization imaging (OPI). The skin is the largest organ in the body and consists of three primary layers, namely, the epidermis (the outermost layer exposed to the world), the dermis, and the hypodermis. The epidermis changes from to site to site, mainly because of difference in hydration. A lower water content increase light scattering and reduce the penetration depth of radiation. In this work, two hairless mice have been selected to evaluate their skin features by using DRS and OPI. Four areas of the specimen body were chosen to realize the comparison: back, abdomen, tail, and head. From DRS, it was possible to distinguish the skin nature because of different blood irrigation at dermis. In the other hand, OPI shows pseudo-depolarizing regions in the measured Mueller images related to a spatially varying propagation of the scattered light. This provides information about the cell size in the irradiated skin.

  2. Recent progress in noninvasive diabetes screening by diffuse reflectance near-infrared skin spectroscopy

    NASA Astrophysics Data System (ADS)

    Heise, H. M.; Haiber, S.; Licht, M.; Ihrig, D. F.; Moll, C.; Stuecker, M.

    2006-02-01

    Near infrared spectroscopy exhibits a tremendous potential for clinical chemistry and tissue pathology. Owing to its penetration depth into human skin, near infrared radiation can probe chemical and structural information non-invasively. Metabolic diseases such as diabetes mellitus increase nonenzymatic glycation with the effect of glucose molecules bonding chemically to proteins. In addition, glycation accumulates on tissue proteins with the clearest evidence found in extracellular skin collagen, affecting also covalent crosslinking between adjacent protein strands, which reduces their flexibility, elasticity, and functionality. Non-enzymatically glycated proteins in human skin and following chemical and structural skin changes were our spectroscopic target. We carried out measurements on 109 subjects using two different NIR-spectrometers equipped with diffuse reflection accessories. Spectra of different skin regions (finger and hand/forearm skin) were recorded for comparison with clinical blood analysis data and further patient information allowing classification into diabetics and non-diabetics. Multivariate analysis techniques for supervised classification such as linear discriminant analysis (LDA) were applied using broad spectral interval data or a number of optimally selected wavelengths. Based on fingertip skin spectra recorded by fiber-optics, it was possible to classify diabetics and non-diabetics with a maximum accuracy of 87.8 % using leave-5-out cross-validation (sensitivity of 87.5. %, specificity of 88.2 %). With the results of this study, it can be concluded that ageing and glycation at elevated levels cannot always be separated from each other.

  3. [Characterization of oxidation on pyrite by in situ attenuated total reflection-Fourier transform infrared spectroscopy].

    PubMed

    Zhang, Ping; Chen, Yong-Heng; Liu, Juan; Wang, Chun-Lin

    2008-11-01

    Pyrite is one of common natural minerals in the environment, which is easily oxidated and is the main source of acidity mine drainage (AMD). The study on the oxidation of pyrite is helpful to comprehend the mechanism of its pollution. In the present paper, the oxidation of pyrite under the condition of air and water was respectively investigated by the attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) through the designing experiment on the formation of carbon dioxide by the reaction of carbonate in pyrite with sulfuric acid formed by the oxidation of pyrite. The CO2 measurement by in situ ATR indicated that the oxidation rate of pyrite both in the air and in water both reduced by time and the latter reduced more obviously than the former, which indicates that the oxidation rate of pyrite in water is slower than that in the air. In the ATR measurement, the double absorption peaks at 2 350 cm(-1) that indicates CO2 have high selectivity, and permits the in situ analysis.

  4. Analysis of total oil and fatty acids composition by near infrared reflectance spectroscopy in edible nuts

    NASA Astrophysics Data System (ADS)

    Kandala, Chari V.; Sundaram, Jaya

    2014-10-01

    Near Infrared (NIR) Reflectance spectroscopy has established itself as an important tool in quantifying water and oil present in various food materials. It is rapid and nondestructive, easier to use, and does not require processing the samples with corrosive chemicals that would render them non-edible. Earlier, the samples had to be ground into powder form before making any measurements. With the development of new soft ware packages, NIR techniques could now be used in the analysis of intact grain and nuts. While most of the commercial instruments presently available work well with small grain size materials such as wheat and corn, the method present here is suitable for large kernel size products such as shelled or in-shell peanuts. Absorbance spectra were collected from 400 nm to 2500 nm using a NIR instrument. Average values of total oil contents (TOC) of peanut samples were determined by standard extraction methods, and fatty acids were determined using gas chromatography. Partial least square (PLS) analysis was performed on the calibration set of absorption spectra, and models were developed for prediction of total oil and fatty acids. The best model was selected based on the coefficient of determination (R2), Standard error of prediction (SEP) and residual percent deviation (RPD) values. Peanut samples analyzed showed RPD values greater than 5.0 for both absorbance and reflectance models and thus could be used for quality control and analysis. Ability to rapidly and nondestructively measure the TOC, and analyze the fatty acid composition, will be immensely useful in peanut varietal improvement as well as in the grading process of grain and nuts.

  5. Immunoglobulin surface-binding kinetics studied by total internal reflection with fluorescence correlation spectroscopy.

    PubMed Central

    Thompson, N L; Axelrod, D

    1983-01-01

    An experimental application of total internal reflection with fluorescence correlation spectroscopy (TIR/FCS) is presented. TIR/FCS is a new technique for measuring the binding and unbinding rates and surface diffusion coefficient of fluorescent-labeled solute molecules in equilibrium at a surface. A laser beam totally internally reflects at the solid-liquid interface, selectively exciting surface-adsorbed molecules. Fluorescence collected by a microscope from a small, well-defined surface area approximately 5 micron2 spontaneously fluctuates as solute molecules randomly bind to, unbind from, and/or diffuse along the surface in chemical equilibrium. The fluorescence is detected by a photomultiplier and autocorrelated on-line by a minicomputer. The shape of the autocorrelation function depends on the bulk and surface diffusion coefficients, the binding rate constants, and the shape of the illuminated and observed region. The normalized amplitude of the autocorrelation function depends on the average number of molecules bound within the observed area. TIR/FCS requires no spectroscopic or thermodynamic change between dissociated and complexed states and no extrinsic perturbation from equilibrium. Using TIR/FCS, we determine that rhodamine-labeled immunoglobulin and insulin each nonspecifically adsorb to serum albumin-coated fused silica with both reversible and irreversible components. The characteristic time of the most rapidly reversible component measured is approximately 5 ms and is limited by the rate of bulk diffusion. Rhodamine-labeled bivalent antibodies to dinitrophenyl (DNP) bind to DNP-coated fused silica virtually irreversibly. Univalent Fab fragments of these same antibodies appear to specifically bind to DNP-coated fused silica, accompanied by a large amount of nonspecific binding. TIR/FCS is shown to be a feasible technique for measuring absorption/desorption kinetic rates at equilibrium. In suitable systems where nonspecific binding is low, TIR

  6. Physiological basis for noninvasive skin cancer diagnosis using diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Zhang, Yao; Markey, Mia K.; Tunnell, James W.

    2017-02-01

    Diffuse reflectance spectroscopy offers a noninvasive, fast, and low-cost alternative to visual screening and biopsy for skin cancer diagnosis. We have previously acquired reflectance spectra from 137 lesions in 76 patients and determined the capability of spectral diagnosis using principal component analysis (PCA). However, it is not well elucidated why spectral analysis enables tissue classification. To provide the physiological basis, we used the Monte Carlo look-up table (MCLUT) model to extract physiological parameters from those clinical data. The MCLUT model results in the following physiological parameters: oxygen saturation, hemoglobin concentration, melanin concentration, vessel radius, and scattering parameters. Physiological parameters show that cancerous skin tissue has lower scattering and larger vessel radii, compared to normal tissue. These results demonstrate the potential of diffuse reflectance spectroscopy for detection of early precancerous changes in tissue. In the future, a diagnostic algorithm that combines these physiological parameters could be enable non-invasive diagnosis of skin cancer.

  7. Investigation of the mineralization process of biosystems by IR diffuse reflection spectroscopy methods

    NASA Astrophysics Data System (ADS)

    Zolotarev, V. M.

    2014-04-01

    Particular features of the application of Fourier-transform IR diffuse reflection spectroscopy methods to the in situ investigation of spectra of porous rough objects have been considered. The reciprocal influence of the scattering and absorption of porous objects on the formation of the impurity-band contour in the diffuse reflection spectrum when the impurity center is in the vicinity of the fundamental IR absorption band has been analyzed. Using methods of Fourier-transform IR diffuse reflection spectroscopy, processes of mineralization of fragments of mammoth tusks from a multilayer paleolithic site at Yudinovo (Bryansk oblast, Russia) and fragments of mammoth tusks from Yakutia (Russia) have been investigated. Particular features of mineralization processes (carbonate formation and silicification) on the surface and in the volume of objects at different conditions of their burial (humidity, temperature, soil acidity) have been studied.

  8. Midinfrared spectroscopy of synthetic olivines: Thermal emission, specular and diffuse reflectance, and attenuated total reflectance studies of forsterite to fayalite

    NASA Astrophysics Data System (ADS)

    Lane, Melissa D.; Glotch, Timothy D.; Dyar, M. Darby; Pieters, Carle M.; Klima, Rachel; Hiroi, Takahiro; Bishop, Janice L.; Sunshine, Jessica

    2011-08-01

    Synthetic olivine samples ranging in composition from forsterite to fayalite are analyzed in the midinfrared using thermal emission, specular and diffuse reflectance, and attenuated total reflectance spectroscopies to study the spectral effects of Mg-Fe solid solution. For each method, fundamental bands gradually change in position and strength from Mg2SiO4 at larger wave numbers to Fe2SiO4 at smaller wave numbers. Each spectrum is diagnostic of chemistry within the continuum, as previously noted. In this study, 10 identified fundamental bands are traceable across the solid solution series for each technique. In pelletized sample spectra, the 10 bands shift approximately linearly in position by as little as 11 to as much as 64 cm-1. In powdered sample spectra, the bands shift by as little as 12 to as much as 74 cm-1 (disregarding one outlier point). Moreover, for every spectral technique, an even larger linear shift is identified of a specific emissivity maximum/reflectivity minimum (the flection position). From forsterite to fayalite, this flection position shifts by at least 88 cm-1, which is, on average, 48% more than the largest fundamental band shift within the same data set for the pelletized spectra and 44% more for the powdered spectra. Also the R2 and 2σ values of the best fit line for the flection position shift (versus Fo#) generally were as good as or routinely better than those of the fundamental bands. Thus, the flection position should be considered as a means of determining Mg-Fe olivine composition when using thermal emission, specular reflectance, diffuse reflectance, or attenuated total reflectance spectroscopic data.

  9. In vivo detection of epileptic brain tissue using static fluorescence and diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Yadav, Nitin; Bhatia, Sanjiv; Ragheb, John; Mehta, Rupal; Jayakar, Prasanna; Yong, William; Lin, Wei-Chiang

    2013-02-01

    Diffuse reflectance and fluorescence spectroscopy are used to detect histopathological abnormalities of an epileptic brain in a human subject study. Static diffuse reflectance and fluorescence spectra are acquired from normal and epileptic brain areas, defined by electrocorticography (ECoG), from pediatric patients undergoing epilepsy surgery. Biopsy specimens are taken from the investigated sites within an abnormal brain. Spectral analysis reveals significant differences in diffuse reflectance spectra and the ratio of fluorescence and diffuse reflectance spectra from normal and epileptic brain areas defined by ECoG and histology. Using these spectral differences, tissue classification models with accuracy above 80% are developed based on linear discriminant analysis. The differences between the diffuse reflectance spectra from the normal and epileptic brain areas observed in this study are attributed to alterations in the static hemodynamic characteristics of an epileptic brain, suggesting a unique association between the histopathological and the hemodynamic abnormalities in an epileptic brain.

  10. Carbon dioxide adsorption on a ZnO(101[combining macron]0) substrate studied by infrared reflection absorption spectroscopy.

    PubMed

    Buchholz, Maria; Weidler, Peter G; Bebensee, Fabian; Nefedov, Alexei; Wöll, Christof

    2014-01-28

    The adsorption of carbon dioxide on the mixed-terminated ZnO(101[combining macron]0) surface of a bulk single crystal was studied by UHV Infrared Reflection Absorption Spectroscopy (IRRAS). In contrast to metals, the classic surface selection rule for IRRAS does not apply to bulk oxide crystals, and hence vibrational bands can also be observed for s-polarized light. Although this fact substantially complicates data interpretation, a careful analysis allows for a direct determination of the adsorbate geometry. Here, we demonstrate the huge potential of IR-spectroscopy for investigations on oxide single crystal surfaces by considering all three components of the incident polarized light separately. We find that the tridentate (surface) carbonate is aligned along the [0001] direction. A comparison to data reported previously for CO2 adsorbed on the surfaces of ZnO nanoparticles provides important insight into the role of defects in the surface chemistry of powder particles.

  11. Comparison of two methods for noninvasive determination of carotenoids in human and animal skin: Raman spectroscopy versus reflection spectroscopy.

    PubMed

    Darvin, Maxim E; Sandhagen, Carl; Koecher, Wolfgang; Sterry, Wolfram; Lademann, Juergen; Meinke, Martina C

    2012-07-01

    Based on compelling in vivo and in vitro studies on human skin, carotenoids are thought to be of great interest as powerful antioxidants acting to prevent free-radical-induced damages, including premature skin ageing and the development of skin diseases such as cancer. Among the available techniques that are suitable for noninvasive determination of carotenoids in human skin, are resonance Raman spectroscopy (RRS) and reflection spectroscopy (RS). For RS, a LED-based miniaturized spectroscopic system (MSS) was developed for noninvasive measurement of carotenoids in human skin. The optimization and subsequent calibration of the MSS was performed with the use of RRS. A strong correlation between the carotenoid concentration determined by the RS and for the RRS system was achieved for human skin in vivo (R = 0.88) and for bovine udder skin in vitro (R = 0.81).

  12. Exemplar Selectivity Reflects Perceptual Similarities in the Human Fusiform Cortex

    PubMed Central

    Davidesco, Ido; Zion-Golumbic, Elana; Bickel, Stephan; Harel, Michal; Groppe, David M.; Keller, Corey J.; Schevon, Catherine A.; McKhann, Guy M.; Goodman, Robert R.; Goelman, Gadi; Schroeder, Charles E.; Mehta, Ashesh D.; Malach, Rafael

    2014-01-01

    While brain imaging studies emphasized the category selectivity of face-related areas, the underlying mechanisms of our remarkable ability to discriminate between different faces are less understood. Here, we recorded intracranial local field potentials from face-related areas in patients presented with images of faces and objects. A highly significant exemplar tuning within the category of faces was observed in high-Gamma (80–150 Hz) responses. The robustness of this effect was supported by single-trial decoding of face exemplars using a minimal (n = 5) training set. Importantly, exemplar tuning reflected the psychophysical distance between faces but not their low-level features. Our results reveal a neuronal substrate for the establishment of perceptual distance among faces in the human brain. They further imply that face neurons are anatomically grouped according to well-defined functional principles, such as perceptual similarity. PMID:23438448

  13. [Preliminary Study on the Detection of Pork Tenderness by Three-Dimensional Diffuse Reflectance Spectroscopy].

    PubMed

    Zhang, Zhi-yong; Zuo, Yue-ming; Chen, Jin-ming; Li, Gang; Chen, Chen; Yang, Wei

    2015-06-01

    Tenderness is an important index to evaluate the pork's quality, in this paper a method called three-dimensional diffuse reflectance spectroscopy was proposed to detect pork tenderness. Because pork has a strong scattering impact on light, this method introduced more scattering information of pork samples into spectral analysis of tenderness. Using the special data acquisition system, three-dimensional diffuse reflectance spectra of 64 pork samples were constructed by collecting the emergent light signals of different distances away from the light incident point. And n-way partial least squares (NPLS) regression was applied to establish the calibration model between the pork tenderness and three-dimensional diffuse reflectance spectra which were denoised by wavelet transform. The determination coefficient of model for the calibration set (R2(Cal)) is 0.883 1, and the root mean squared error of calibration (RMSEC) is 3.685 0N. The determination coefficient of model for the prediction set (R2(Pred)) is 0.874 7, and the root mean squared error of prediction (RMSEP) is 3.975 6N. The result indicates that the NPLS model of pork tenderness built by three-dimensional diffuse reflectance spectra has higher calibration accuracy and prediction stability than the traditional diffuse reflectance spectra. Three-dimensional diffuse reflectance spectroscopy can be expected to be a new method to quickly detect the tenderness and the other qualities of pork.

  14. Development of techniques for advanced optical contamination measurement with internal reflection spectroscopy, phase 2, volume 2

    NASA Technical Reports Server (NTRS)

    Hayes, J. D.

    1972-01-01

    Attenuated total reflectance spectra of individual contaminants in space simulation chambers are presented as well as spectra of mixtures and figures exhibiting the effects of film thickness on reflectance spectra. Detailed calibration spectra were made for three selected concentrations (film thickness) for two contaminants and for one concentration for all contaminants.

  15. Reflectance spectroscopy of palagonite and iron-rich montmorillonite clay mixtures: Implications for the surface composition of Mars

    NASA Technical Reports Server (NTRS)

    Orenberg, J. B.; Handy, J.

    1991-01-01

    Because of the power of remote sensing reflectance spectroscopy in determining mineralogy, it was used as the major method of identifying possible mineral analogs of the Martian surface. A summary of proposed Martian surface compositions from reflectance spectroscopy before 1979 was presented. Since that time, iron-rich montmorillonite clay, nanocrystalline or nanophase hematite, and palagonite were suggested as Mars soil analog materials.

  16. Time-dependent diffuse reflectance spectroscopy for in vivo characterization of pediatric epileptogenic brain lesions

    NASA Astrophysics Data System (ADS)

    Oh, Sanghoon; Ragheb, John; Bhatia, Sanjiv; Sandberg, David; Johnson, Mahlon; Fernald, Bradley; Lin, Wei-Chiang

    2008-02-01

    Optical spectroscopy for in vivo tissue diagnosis is performed traditionally in a static manner; a snap shot of the tissue biochemical and morphological characteristics is captured through the interaction between light and the tissue. This approach does not capture the dynamic nature of a living organ, which is critical to the studies of brain disorders such as epilepsy. Therefore, a time-dependent diffuse reflectance spectroscopy system with a fiber-optic probe was designed and developed. The system was designed to acquire broadband diffuse reflectance spectra (240 ~ 932 nm) at an acquisition rate of 33 Hz. The broadband spectral acquisition feature allows simultaneous monitoring of various physiological characteristics of tissues. The utility of such a system in guiding pediatric epilepsy surgery was tested in a pilot clinical study including 13 epilepsy patients and seven brain tumor patients. The control patients were children undergoing suregery for brain tumors in which measurements were taken from normal brain exposed during the surgery. Diffuse reflectance spectra were acquired for 12 seconds from various parts of the brain of the patients during surgery. Recorded spectra were processed and analyzed in both spectral and time domains to gain insights into the dynamic changes in, for example, hemodynamics of the investigated brain tissue. One finding from this pilot study is that unsynchronized alterations in local blood oxygenation and local blood volume were observed in epileptogenic cortex. These study results suggest the advantage of using a time-dependent diffuse reflectance spectroscopy system to study epileptogenic brain in vivo.

  17. Diffuse reflectance spectroscopy measurements for tissue-type discrimination during deep brain stimulation.

    PubMed

    Antonsson, Johan; Eriksson, Ola; Blomstedt, Patric; Bergenheim, A Tommy; I Hariz, Marwan; Richter, Johan; Zsigmond, Peter; Wårdell, Karin

    2008-06-01

    Diffuse reflectance spectroscopy as a method for improving intracerebral guidance during functional neurosurgery has been investigated. An optical probe was developed for measurements during stereotactic and functional neurosurgery in man. The aim of the study was to investigate the spectral differences between white and grey matter and between white matter and functional targets. Diffuse reflectance spectroscopy measurements in ten patients were recorded at incremental steps towards and in three different functional targets (STN, GPi and Zi). The recorded spectra along the trajectory were sorted into white or grey matter, based on preoperative MRI images or the recorded spectral shape and intensity. The difference between tissue types was calculated as a quotient. Significant intensity differences between white and grey matter were found to be at least 14% (p < 0.05) and 20% (p < 0.0001) for MRI and spectral-sorted data respectively. The reflectance difference between white matter and the functional targets of GPi was higher than for STN and Zi. The results indicate that diffuse reflectance spectroscopy has a potential to be developed to a suitable complement to other intracerebral guidance methods.

  18. Quantification of hemoglobin and its derivatives in oral cancer diagnosis by diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Kaniyappan, Udayakumar; Gnanatheepam, Einstein; Aruna, Prakasarao; Dornadula, Koteeswaran; Ganesan, Singaravelu

    2017-02-01

    Cancer is one of the most common threat to human beings and it increases at an alarming level around the globe. In recent years, due to the advancements in opto-electronic technology, various optical spectroscopy techniques have emerged to assess the photophysicochemical and morphological conditions of normal and malignant tissues in micro as well as in macroscopic scale. In this regard, diffuse reflectance spectroscopy is considered to be the simplest, cost effective and rapid technique in diagnosis of cancerous tissues. In the present study, the hemoglobin concentration in normal and cancerous oral tissues was quantified and subsequent statistical analysis has been carried out to verify the diagnostic potentiality of the technique.

  19. [Sugar characterization of mini-watermelon and rapid sugar determination by near infrared diffuse reflectance spectroscopy].

    PubMed

    Wang, Shuo; Yuan, Hong-fu; Song, Chun-feng; Xie, Jin-chun; Li, Xiao-yu; Feng, Le-ping

    2012-08-01

    In the present paper, the distribution of sugar level within the mini-watermelon was studied, a new sugar characterization method of mini-watermelon using average sugar level, the highest sugar level and the lowest sugar level index is proposed. Feasibility of nondestructive determination of mini-watermenlon sugar level using diffuse reflectance spectroscopy information was investigated by an experiment. PLS models for measuring the 3 sugar levels were established. The results obtained by near infrared spectroscopy agreed with that of the new method established above.

  20. High-sensitivity polarization modulation reflectance spectroscopy of cavity polaritons in a ZnO microcavity

    NASA Astrophysics Data System (ADS)

    Hasegawa, Takayuki; Kishimoto, Ryo; Takagi, Yoshihiro; Kawase, Toshiki; Kim, DaeGwi; Nakayama, Masaaki

    2014-03-01

    We report that polarization modulation reflectance (PMR) spectroscopy is highly sensitive to the cavity polaritons in a ZnO microcavity with HfO2/SiO2 distributed Bragg reflectors. We demonstrate that the cavity-polariton dispersion, even in the energy region of strong absorption by exciton continuum states, is clearly observed by PMR spectroscopy. The PMR spectra were quantitatively analyzed by a transfer-matrix method taking into account three types of excitons labeled A, B, and C. Line-shape analysis of the PMR spectra indicates that the anisotropy of the excitonic transitions is considerable in treating the cavity polariton in the ZnO microcavity.

  1. Detection of Spectral Features of Anomalous Vegetation From Reflectance Spectroscopy Related to Pipeline Leakages

    NASA Astrophysics Data System (ADS)

    van der Meijde, M.; van der Werff, H. M.; Kooistra, J. F.

    2004-12-01

    Underground pipeline leakage inspection is an open problem with large economical and environmental impact. Traditional methods for investigating leakage and pollution, like drilling, are time consuming, destructive and expensive. A non-destructive and more economic exploration method would be a valuable complement to sub-surface investigative methods. Reflectance spectroscopy (or hyperspectral remote sensing) proved to be a tool that offers a non-destructive investigative method to identify anomalous spectral features in vegetation. One of the major environmental problems related to pipelines is the leakage of hydrocarbons into the environment. Hydrocarbons can establish locally anomalous zones that favor the development of a diverse array of chemical and mineralogical changes. Any vegetation present in these zones is likely to be influenced by the hostile and polluted environment. Geobotanical anomalies occur as a result of the effect of hydrocarbons on the growth of vegetation. The most likely changes in the vegetation are expected to occur in the chlorophyll concentrations which are an indicator of the health state. This is the main conclusion after an extensive field campaign in May 2004 in Holland investigating a 1 km trajectory of a 21 km long pipeline. The pipeline is `sweating' benzene condensates at approximately 50% of the connection points between the 9 meter segments of the pipeline. Spectral measurements were conducted at four different test locations in the 1 km trajectory. The test locations were covered by long grass, one of the fields was recently mown. Using different survey designs we can confirm the presence of geobotanical anomalies in different locations using various spectral interpretation techniques like linear red edge shifts, Carter stress indices, normalized difference vegetation index en yellowness index. After the interpretation of the geobotanical anomalies, derived from hyperspectral measurements, we compared the findings with

  2. A in Situ Study of Plasma Etching Surface Chemistry Using Reflection Infrared Spectroscopy

    NASA Astrophysics Data System (ADS)

    Lucchesi, Robert Peter

    Plasma etching is an important process in semiconductor manufacturing. The present work describes a means by which plasma etching surface chemistry may be studied in situ. The systems of interest were the sulfur hexafluoride plasma etching of silicon and tungsten in a diode reactor. A reflection infrared spectrometer was designed and constructed to be able to scan the frequency region from about 550cm ^{-1} to 1300cm ^{-1}, and a plasma etch reactor was modified to allow access to the infrared beam. Reflection infrared spectroscopy (RIS) allows the measurement of light absorbed by molecules adsorbed on a reflective surface selectively from light absorbed by molecules in the gas phase. RIS applied to heavily doped silicon substrates had limited success. While sulfur fluorine species were detected on the surface during plasma etching, no silicon fluorine species were ever detected. The sulfur fluorine species (referred to as SF_{rm x}) were not seen under any circumstances in the absence of an SF_6 plasma. Severe baseline drift of the infrared spectrometer during plasma etching was the main reason for the limited success. However, the results were significant in that they demonstrated the presence of sulfur fluorine species during the plasma etching of silicon in an SF_6 plasma. The baseline drift problems experienced with silicon were not found when tungsten was studied. The same SF _{rm x} feature detected on silicon was also found on tungsten during etching in an SF_6 plasma, but was never seen in the absence of the plasma. A detailed experimental and theoretical study was performed to show that the surface absorption feature seen was actually due to SF _{rm x} adsorbed on the surface. A hysteresis behavior was observed in the SF_ {rm x} concentration as the plasma power was ramped up and subsequently decreased. Finally, it could not be concluded if SF_{rm x} participated in the etch reaction by fluorinating the tungsten surface, but the presence of SF_ {rm x} on

  3. VNIR reflectance spectroscopy of natural carbonate rocks: implication for remote sensing identification of fault damage zones

    NASA Astrophysics Data System (ADS)

    Traforti, Anna; Mari, Giovanna; Carli, Cristian; Demurtas, Matteo; Massironi, Matteo; Di Toro, Giulio

    2017-04-01

    Reflectance spectroscopy in the visible and near-infrared (VNIR) is a common technique used to study the mineral composition of Solar System bodies from remote sensed and in-situ robotic exploration. In the VNIR spectral range, both crystal field and vibrational overtone absorptions can be present with spectral characteristics (i.e. albedo, slopes, absorption band with different positions and depths) that vary depending on composition and texture (e.g. grain size, roughness) of the sensed materials. The characterization of the spectral variability related to the rock texture, especially in terms of grain size (i.e., both the size of rock components and the size of particulates), commonly allows to obtain a wide range of information about the different geological processes modifying the planetary surfaces. This work is aimed at characterizing how the grain size reduction associated to fault zone development produces reflectance variations in rock and mineral spectral signatures. To achieve this goal we present VNIR reflectance analysis of a set of fifteen rock samples collected at increasing distances from the fault core of the Vado di Corno fault zone (Campo Imperatore Fault System - Italian Central Apennines). The selected samples had similar content of calcite and dolomite but different grain size (X-Ray Powder Diffraction, optical and scanning electron microscopes analysis). Consequently, differences in the spectral signature of the fault rocks should not be ascribed to mineralogical composition. For each sample, bidirectional reflectance spectra were acquired with a Field-Pro Spectrometer mounted on a goniometer, on crushed rock slabs reduced to grain size <800, <200, <63, <10 μm and on intact fault zone rock slabs. The spectra were acquired on dry samples, at room temperature and normal atmospheric pressure. The source used was a Tungsten Halogen lamp with an illuminated spot area of ca. 0.5 cm2and incidence and emission angles of 30˚ and 0˚ respectively

  4. Discrimination between immature and mature green coffees by attenuated total reflectance and diffuse reflectance Fourier transform infrared spectroscopy.

    PubMed

    Craig, Ana Paula; Franca, Adriana S; Oliveira, Leandro S

    2011-10-01

    The objective of this work was to evaluate the potential of Fourier transform infrared spectroscopy (FTIR) in the characterization and discrimination between immature and mature or ripe coffee beans. Arabica coffee beans were submitted to FTIR analysis by reflectance readings employing attenuated total reflectance (ATR) and diffuse reflectance (DR) accessories. The obtained spectra were similar, but in general higher absorbance values were observed for nondefective beans in comparison to immature ones. Multivariate statistical analysis (principal component analysis, PCA, and agglomerative hierarchical clustering, AHC) was performed in order to verify the possibility of discrimination between immature and mature coffee samples. A clear separation between immature and mature coffees was observed based on AHC and PCA analyses of the normalized spectra obtained by employing both ATR and DR accessories. Linear discriminant analysis was employed for developing classification models, with recognition and prediction abilities of 100%. Such results showed that FTIR analysis presents potential for the development of a simple routine methodology for separation of immature and mature coffee beans. Practical Application: The ultimate goal of this research is to be able to propose improvements in the way immature coffee beans are separated from graded mature beans in coffee facilities (cooperatives and other coffee producer's associations). The results obtained herein point toward FTIR as a potential tool for the aimed improvements.

  5. Prediction of alpaca fibre quality by near-infrared reflectance spectroscopy.

    PubMed

    Canaza-Cayo, A W; Alomar, D; Quispe, E

    2013-07-01

    Rapid and efficient methods to evaluate variables associated with fibre quality are essential in animal breeding programs and fibre trade. Near-infrared reflectance spectroscopy (NIRS) combined with multivariate analysis was evaluated to predict textile quality attributes of alpaca fibre. Raw samples of fibres taken from male and female Huacaya alpacas (n = 291) of different ages and colours were scanned and their visible-near-infrared (NIR; 400 to 2500 nm) reflectance spectra were collected and analysed. Reference analysis of the samples included mean fibre diameter (MFD), standard deviation of fibre diameter (SDFD), coefficient of variation of fibre diameter (CVFD), mean fibre curvature (MFC), standard deviation of fibre curvature (SDFC), comfort factor (CF), spinning fineness (SF) and staple length (SL). Patterns of spectral variation (loadings) were explored by principal component analysis (PCA), where the first four PC's explained 99.97% and the first PC alone 95.58% of spectral variability. Calibration models were developed by modified partial least squares regression, testing different mathematical treatments (derivative order, subtraction gap, smoothing segment) of the spectra, with or without applying spectral correction algorithms (standard normal variate and detrend). Equations were selected through one-out cross-validation according to the proportion of explained variance (R 2CV), root mean square error in cross-validation (RMSECV) and the residual predictive deviation (RPD), which relates the standard deviation of the reference data to RMSECV. The best calibration models were accomplished when using the NIR region (1100 to 2500 nm) for the prediction of MFD and SF, with R 2CV = 0.90 and 0.87; RMSECV = 1.01 and 1.08 μm and RPD = 3.13 and 2.73, respectively. Models for SDFD, CVFD, MFC, SDFC, CF and SL had lower predictive quality with R 2CV < 0.65 and RPD < 1.5. External validation performed for MFD and SF on 91 samples was slightly poorer than cross

  6. Anomalous dispersion effects in diffuse reflectance infrared fourier transform spectroscopy: A study of optical geometries

    SciTech Connect

    Hembree, D. M., Jr.; Smyrl, H. R.

    1989-02-01

    In this report, the two most common diffuse reflectanceinfrared Fourier transform spectroscopy (DRIFTS) optical geometries(on-axis and off-axis) are investigated in terms of adherence to theKubelka-Munk theory. It was found that specular reflection, whether inthe form of regular Fresnel reflection or diffuse Fresnel reflection,is the major cause of spectral distortion in typical diffusereflectance measurements. A discussion of the origin of the variationin specular background associated with resonances is presented.Once the adverse effects of specular reflection are minimized, thelinear relationship between response and concentration predictedby Kubelka-Munk theory was found to extend to concentrated samples.Up to a point, this was the case even for intense absorption bandswhere anomalous dispersion leads to large changes in specular intensity.

  7. [Near infrared reflectance spectroscopy (NIRS) and its application in the determination for the quality of animal feed and products].

    PubMed

    Wang, Li; Meng, Qing-Xiang; Ren, Li-Ping; Yang, Jian-Song

    2010-06-01

    Near-infrared reflectance spectroscopy (NIRS) has been the most rapidly developing and noticeable spectrographic analytical technique in recent years. The determining principle and progresses of near-infrared reflectance spectroscopy are presented briefly. It mainly includes the progresses in pre-processing technique and analyzing model of near-infrared reflectance spectroscopy. Two pre-processing techniques, including differential coefficient-dealt with technique, the signal-smoothing technique, and four analyzing models of near-infrared spectroscopy, including the multiplied lined regression (MLR), principal component analysis (PCA), partial least squares (PLS), and artificial nerve network (ANN). The application of near-infrared reflectance spectroscopy to the first time. The investigation of reviewed papers shows that the near-infrared reflectance spectroscopy is widely applied in feed analysis and animal products analysis because of its rapidness, non-destruction and non-pollution. The near infrared reflectance spectroscopy has been used to determine the feed common ingredient, such as dry matter, crude protein, crude fiber, crude fat and so on, micro-components including amino acid, vitamin, and noxious components, and to determine the physical and chemical properties of animal products which including egg, mutton, beef and pork. Details of the analytical characteristics of feed and animal products described in the reviewed papers are given. New trends and limits to the application of near-infrared reflectance spectroscopy in these fields are also discussed.

  8. Analysis of bacteria on steel surfaces using reflectance micro-Fourier transform infrared spectroscopy.

    PubMed

    Ojeda, Jesús J; Romero-González, María E; Banwart, Steven A

    2009-08-01

    Reflectance micro-Fourier transform infrared (FT-IR) analysis has been applied to characterize biofilm formation of Aquabacterium commune, a common microorganism present on drinking water distribution systems, onto the increasingly popular pipe material stainless steel EN1.4307. The applicability of the reflectance micro-FT-IR technique for analyzing the bacterial functional groups is discussed, and the results are compared to spectra obtained using more conventional FT-IR techniques: transmission micro-FT-IR, attenuated transmitted reflectance (ATR), and KBr pellets. The differences between the infrared spectra of wet and dried bacteria, as well as free versus attached bacteria, are also discussed. The spectra obtained using reflectance micro-FT-IR spectroscopy were comparable to those obtained using other FT-IR techniques. The absence of sample preparation, the potential to analyze intact samples, and the ability to characterize opaque and thick samples without the need to transfer the bacterial samples to an infrared transparent medium or produce a pure culture were the main advantages of reflectance micro-FT-IR spectroscopy.

  9. Diagnostics of pigmented skin tumors based on laser-induced autofluorescence and diffuse reflectance spectroscopy

    SciTech Connect

    Borisova, E; Avramov, L; Troyanova, P; Pavlova, P

    2008-06-30

    Results of investigation of cutaneous benign and malignant pigmented lesions by laser-induced autofluorescence spectroscopy (LIAFS) and diffuse reflectance spectroscopy (DRS) are presented. The autofluorescence of human skin was excited by a 337-nm nitrogen laser. A broadband halogen lamp (400-900 nm) was used for diffuse reflectance measurements. A microspectrometer detected in vivo the fluorescence and reflectance signals from human skin. The main spectral features of benign (dermal nevi, compound nevi, dysplastic nevi) and malignant (melanoma) lesions are discussed. The combined usage of the fluorescence and reflectance spectral methods to determine the type of the lesion, which increases the total diagnostic accuracy, is compared with the usage of LIAFS or DRS only. We also applied colorimetric transformation of the reflectance spectra detected and received additional evaluation criteria for determination of type of the lesion under study. Spectra from healthy skin areas near the lesion were detected and changes between healthy and lesion skin spectra were revealed. The influence of the main skin pigments on the detected spectra is discussed and evaluation of possibilities for differentiation between malignant and benign lesions is performed based on their spectral properties. This research shows that the non-invasive and high-sensitive in vivo detection by means of appropriate light sources and detectors should be possible, related to the real-time determination of existing pathological conditions. (special issue devoted to application of laser technologies in biophotonics and biomedical studies)

  10. Attenuated Total Reflection (ATR) Sampling in Infrared Spectroscopy of Heterogeneous Materials Requires Reproducible Pressure Control.

    PubMed

    Lu, Zhenyu; Cassidy, Brianna M; DeJong, Stephanie A; Belliveau, Raymond G; Myrick, Michael L; Morgan, Stephen L

    2017-01-01

    Attenuated total reflection Fourier transform infrared (ATR FT-IR) spectroscopy, in which the sample is pressed against an internal reflection element, is a popular technique for rapid IR spectral collection. However, depending on the accessory design, the pressure applied to the sample is not always well controlled. While collecting data from fabrics with heterogeneous coatings, we have observed systematic pressure-dependent changes in spectra that can be eliminated by more reproducible pressure control. We also described a pressure sensor adapted to work with an ATR tower to enable more precise control of pressure during ATR sampling.

  11. Monitoring of landfill leachate dispersion using reflectance spectroscopy and ground-penetrating radar.

    PubMed

    Splajt, T; Ferrier, G; Frostick, L E

    2003-09-15

    The utility of ground-penetrating radar and reflectance spectroscopy in the monitoring of landfill sites has been investigated. Strong correlations between red edge inflection position and chlorophyll and heavy metal concentrations have been demonstrated from grassland species affected by leachate contamination of the soil adjacent to the landfill test site. This study demonstrated that reflectance spectroscopy can identify vegetation affected by leachate-contaminated soil at a range of spatial resolutions. To identify the vegetation affected by leachate contamination, the spectroradiometer must have contiguous bands at sufficient spectral resolution over the critical wave range that measures chlorophyll absorption and the red edge (between 650 and 750 nm). The utility of ground-penetrating radar data to identify leachate escaping from breakout points in the contaminant wall has also been demonstrated. An integrated approach using these techniques, combined with field and borehole sampling and contaminant migration modeling, offers a possible cost-effective monitoring approach for landfill sites.

  12. Application of backward diffuse reflection spectroscopy for monitoring the state of tissues in photodynamic therapy

    SciTech Connect

    Stratonnikov, Aleksandr A; Meerovich, G A; Ryabova, A V; Savel'eva, T A; Loshchenov, V B

    2006-12-31

    The application of backward diffuse reflection (BDR) spectroscopy for in vivo monitoring the degree of haemoglobin oxygenation and concentration of photosensitisers in tissues subjected to photodynamic therapy is demonstrated. A simple experimental technique is proposed for measuring diffuse reflection spectra. The measurements are made under steady-state conditions using a fibreoptic probe with one transmitting and one receiving fibre separated by a fixed distance. Although this approach does not ensure the separation of contributions of scattering and absorption to the spectra being measured, it can be used for estimating the degree of haemoglobin oxygenation and concentration of photosensitisers in the tissues. Simple expressions for estimating the concentration of photosensitisers from the BDR spectra are presented and the accuracy of this approach is analysed. The results of application of BDR spectroscopy for monitoring various photosensitisers are considered. (special issue devoted to multiple radiation scattering in random media)

  13. Analysis of Fungal Pellets by UV-Visible Spectrum Diffuse Reflectance Spectroscopy.

    PubMed

    Lestan, D; Podgornik, H; Perdih, A

    1993-12-01

    The application of the UV-visible spectrum diffuse reflectance spectroscopy for the determination of intracellular pH in vivo, for determination of cytochrome content, and for the noninvasive in vivo detection of the redox state of fungal mitochondrial cytochromes in filamentous fungi is introduced. The time course of the intracellular pH values, mitochondrial cytochromes, and CO-binding pigments content and the correlations between the actual redox state of cytochrome aa(3) and saturation of growth medium with oxygen in pellets of the basidiomycete Phanerochaete chrysosporium were determined. As the test microorganism, the yeast Saccharomyces cerevisiae was used. UV-visible spectrum diffuse reflectance spectroscopy proved to be a promising method for the quick and simple analysis of light-impermeable biological structures for which the classical transmittance spectrophotometric methods are difficult to implement.

  14. Modelling of sensory and instrumental texture parameters in processed cheese by near infrared reflectance spectroscopy.

    PubMed

    Blazquez, Carmen; Downey, Gerard; O'Callaghan, Donal; Howard, Vincent; Delahunty, Conor; Sheehan, Elizabeth; Everard, Colm; O'Donnell, Colm P

    2006-02-01

    This study investigated the application of near infrared (NIR) reflectance spectroscopy to the measurement of texture (sensory and instrumental) in experimental processed cheese samples. Spectra (750 to 2498 nm) of cheeses were recorded after 2 and 4 weeks storage at 4 degrees C. Trained assessors evaluated 9 sensory properties, a texture profile analyser (TPA) was used to record 5 instrumental parameters and cheese 'meltability' was measured by computer vision. Predictive models for sensory and instrumental texture parameters were developed using partial least squares regression on raw or pre-treated spectral data. Sensory attributes and instrumental texture measurements were modelled with sufficient accuracy to recommend the use of NIR reflectance spectroscopy for routine quality assessment of processed cheese.

  15. Subdiffusion reflectance spectroscopy to measure tissue ultrastructure and microvasculature: model and inverse algorithm.

    PubMed

    Radosevich, Andrew J; Eshein, Adam; Nguyen, The-Quyen; Backman, Vadim

    2015-01-01

    Reflectance measurements acquired from within the subdiffusion regime (i.e., lengthscales smaller than a transport mean free path) retain much of the original information about the shape of the scattering phase function. Given this sensitivity, many models of subdiffusion regime light propagation have focused on parametrizing the optical signal through various optical and empirical parameters. We argue, however, that a more useful and universal way to characterize such measurements is to focus instead on the fundamental physical properties, which give rise to the optical signal. This work presents the methodologies that used to model and extract tissue ultrastructural and microvascular properties from spatially resolved subdiffusion reflectance spectroscopy measurements. We demonstrate this approach using ex-vivo rat tissue samples measured by enhanced backscattering spectroscopy.

  16. Application of transcutaneous diffuse reflectance spectroscopy in the measurement of blood glucose concentration

    NASA Astrophysics Data System (ADS)

    Chen, Wenliang; Liu, Rong; Cui, Houxin; Xu, Kexin; Lv, Lina

    2004-07-01

    In this paper, the propagation characteristics of near-infrared (NIR) light in the palm tissue are analyzed, and the principle and feasibility of using transcutaneous diffuse reflectance spectroscopy for non-invasive blood glucose detection are presented. An optical probe suitable for measuring the diffuse reflectance spectrum of human palm and a non-invasive blood glucose detection system using NIR spectroscopy are designed. Based on this system, oral glucose tolerance tests are performed to measure the blood glucose concentrations of two young healthy volunteers. The partial least square calibration model is then constructed by all individual experimental data. The final result shows that correlation coefficients of the two experiments between the predicted blood glucose concentrations and the reference blood glucose concentrations are 0.9870 and 0.9854, respectively. The root mean square errors of prediction of full cross validation are 0.54 and 0.52 mmol/l, respectively.

  17. Micro-reflectance and transmittance spectroscopy: a versatile and powerful tool to characterize 2D materials

    NASA Astrophysics Data System (ADS)

    Frisenda, Riccardo; Niu, Yue; Gant, Patricia; Molina-Mendoza, Aday J.; Schmidt, Robert; Bratschitsch, Rudolf; Liu, Jinxin; Fu, Lei; Dumcenco, Dumitru; Kis, Andras; Perez De Lara, David; Castellanos-Gomez, Andres

    2017-02-01

    Optical spectroscopy techniques such as differential reflectance and transmittance have proven to be very powerful techniques for studying 2D materials. However, a thorough description of the experimental setups needed to carry out these measurements is lacking in the literature. We describe a versatile optical microscope setup for carrying out differential reflectance and transmittance spectroscopy in 2D materials with a lateral resolution of ~1 µm in the visible and near-infrared part of the spectrum. We demonstrate the potential of the presented setup to determine the number of layers of 2D materials and characterize their fundamental optical properties, such as excitonic resonances. We illustrate its performance by studying mechanically exfoliated and chemical vapor-deposited transition metal dichalcogenide samples.

  18. Subdiffusion reflectance spectroscopy to measure tissue ultrastructure and microvasculature: model and inverse algorithm

    PubMed Central

    Radosevich, Andrew J.; Eshein, Adam; Nguyen, The-Quyen; Backman, Vadim

    2015-01-01

    Abstract. Reflectance measurements acquired from within the subdiffusion regime (i.e., lengthscales smaller than a transport mean free path) retain much of the original information about the shape of the scattering phase function. Given this sensitivity, many models of subdiffusion regime light propagation have focused on parametrizing the optical signal through various optical and empirical parameters. We argue, however, that a more useful and universal way to characterize such measurements is to focus instead on the fundamental physical properties, which give rise to the optical signal. This work presents the methodologies that used to model and extract tissue ultrastructural and microvascular properties from spatially resolved subdiffusion reflectance spectroscopy measurements. We demonstrate this approach using ex-vivo rat tissue samples measured by enhanced backscattering spectroscopy. PMID:26414387

  19. Effect of probe geometry and optical properties on the sampling depth for diffuse reflectance spectroscopy.

    PubMed

    Hennessy, Ricky; Goth, Will; Sharma, Manu; Markey, Mia K; Tunnell, James W

    2014-01-01

    The sampling depth of light for diffuse reflectance spectroscopy is analyzed both experimentally and computationally. A Monte Carlo (MC) model was used to investigate the effect of optical properties and probe geometry on sampling depth. MC model estimates of sampling depth show an excellent agreement with experimental measurements over a wide range of optical properties and probe geometries. The MC data are used to define a mathematical expression for sampling depth that is expressed in terms of optical properties and probe geometry parameters.

  20. A reflectance anisotropy spectroscopy study of underpotential deposition of copper onto Au(110)

    NASA Astrophysics Data System (ADS)

    Smith, C. I.; Farell, T.; Lucas, C. A.; Nichols, R. J.; Weightman, P.

    2005-11-01

    The underpotential deposition of Cu on Au(110) has been monitored by Reflection Anisotropy Spectroscopy (RAS). The changes in the intensity of spectral features observed at 2.6 eV and 3.4 eV in the RA spectrum of Au(110) that are induced by the deposition of Cu occur on different timescales. It is suggested that these changes arise, respectively, from the partial quenching of surface states and from changes in surface morphology.

  1. Multiple spatially resolved reflection spectroscopy for in vivo determination of carotenoids in human skin and blood

    NASA Astrophysics Data System (ADS)

    Darvin, Maxim E.; Magnussen, Björn; Lademann, Juergen; Köcher, Wolfgang

    2016-09-01

    Non-invasive measurement of carotenoid antioxidants in human skin is one of the important tasks to investigate the skin physiology in vivo. Resonance Raman spectroscopy and reflection spectroscopy are the most frequently used non-invasive techniques in dermatology and skin physiology. In the present study, an improved method based on multiple spatially resolved reflection spectroscopy (MSRRS) was introduced. The results obtained were compared with those obtained using the ‘gold standard’ resonance Raman spectroscopy method and showed strong correlations for the total carotenoid concentration (R  =  0.83) as well as for lycopene (R  =  0.80). The measurement stability was confirmed to be better than 10% within the total temperature range from 5 °C to  +  30 °C and pressure contact between the skin and the MSRRS sensor from 800 Pa to 18 000 Pa. In addition, blood samples taken from the subjects were analyzed for carotenoid concentrations. The MSRRS sensor was calibrated on the blood carotenoid concentrations resulting in being able to predict with a correlation of R  =  0.79. On the basis of blood carotenoids it could be demonstrated that the MSRRS cutaneous measurements are not influenced by Fitzpatrick skin types I-VI. The MSRRS sensor is commercially available under the brand name biozoom.

  2. Quantitative reflectance spectroscopy of buddingtonite from the Cuprite mining district, Nevada

    NASA Technical Reports Server (NTRS)

    Felzer, Benjamin; Hauff, Phoebe; Goetz, Alexander F. H.

    1994-01-01

    Buddingtonite, an ammonium-bearing feldspar diagnostic of volcanic-hosted alteration, can be identified and, in some cases, quantitatively measured using short-wave infrared (SWIR) reflectance spectroscopy. In this study over 200 samples from Cuprite, Nevada, were evaluated by X ray diffraction, chemical analysis, scanning electron microscopy, and SWIR reflectance spectroscopy with the objective of developing a quantitative remote-sensing technique for rapid determination of the amount of ammonium or buddingtonite present, and its distribution across the site. Based upon the Hapke theory of radiative transfer from particulate surfaces, spectra from quantitative, physical mixtures were compared with computed mixture spectra. We hypothesized that the concentration of ammonium in each sample is related to the size and shape of the ammonium absorption bands and tested this hypothesis for samples of relatively pure buddingtonite. We found that the band depth of the 2.12-micron NH4 feature is linearly related to the NH4 concentration for the Cuprite buddingtonite, and that the relationship is approximately exponential for a larger range of NH4 concentrations. Associated minerals such as smectite and jarosite suppress the depth of the 2.12-micron NH4 absorption band. Quantitative reflectance spectroscopy is possible when the effects of these associated minerals are also considered.

  3. Prediction of erodibility in Oxisols using iron oxides, soil color and diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Arantes Camargo, Livia; Marques, José, Jr.

    2015-04-01

    The prediction of erodibility using indirect methods such as diffuse reflectance spectroscopy could facilitate the characterization of the spatial variability in large areas and optimize implementation of conservation practices. The aim of this study was to evaluate the prediction of interrill erodibility (Ki) and rill erodibility (Kr) by means of iron oxides content and soil color using multiple linear regression and diffuse reflectance spectroscopy (DRS) using regression analysis by least squares partial (PLSR). The soils were collected from three geomorphic surfaces and analyzed for chemical, physical and mineralogical properties, plus scanned in the spectral range from the visible and infrared. Maps of spatial distribution of Ki and Kr were built with the values calculated by the calibrated models that obtained the best accuracy using geostatistics. Interrill-rill erodibility presented negative correlation with iron extracted by dithionite-citrate-bicarbonate, hematite, and chroma, confirming the influence of iron oxides in soil structural stability. Hematite and hue were the attributes that most contributed in calibration models by multiple linear regression for the prediction of Ki (R2 = 0.55) and Kr (R2 = 0.53). The diffuse reflectance spectroscopy via PLSR allowed to predict Interrill-rill erodibility with high accuracy (R2adj = 0.76, 0.81 respectively and RPD> 2.0) in the range of the visible spectrum (380-800 nm) and the characterization of the spatial variability of these attributes by geostatistics.

  4. Quantitative reflectance spectroscopy of buddingtonite from the Cuprite mining district, Nevada

    SciTech Connect

    Felzer, B.; Hauff, P.; Goetz, A.F.H.

    1994-02-01

    Buddingtonite, an ammonium-bearing feldspar diagnostic of volcanic-hosted alteration, can be identified and, in some cases, quantitatively measured using short-wave infrared (SWIR) reflectance spectroscopy. In this study over 200 samples from Cuprite, Nevada, were evaluated by X ray diffraction, chemical analysis, scanning electron microscopy, and SWIR reflectance spectroscopy with the objective of developing a quantitative remote-sensing technique for rapid determination of the amount of ammonium or buddingtonite present, and its distribution across the site. Based upon the Hapke theory of radiative transfer from particulate surfaces, spectra from quantitative, physical mixtures were compared with computed mixture spectra. We hypothesized that the concentration of ammonium in each sample is related to the size and shape of the ammonium absorption bands and tested this hypothesis for samples of relatively pure buddingtonite. We found that the band depth of the 2.12-micron NH4 feature is linearly related to the NH4 concentration for the Cuprite buddingtonite, and that the relationship is approximately exponential for a larger range of NH4 concentrations. Associated minerals such as smectite and jarosite suppress the depth of the 2.12-micron NH4 absorption band. Quantitative reflectance spectroscopy is possible when the effects of these associated minerals are also considered.

  5. Quantum-state-selective decay spectroscopy of 213Ra

    NASA Astrophysics Data System (ADS)

    Lorenz, Ch.; Sarmiento, L. G.; Rudolph, D.; Ward, D. E.; Block, M.; Heßberger, F. P.; Ackermann, D.; Andersson, L.-L.; Cortés, M. L.; Droese, C.; Dworschak, M.; Eibach, M.; Forsberg, U.; Golubev, P.; Hoischen, R.; Kojouharov, I.; Khuyagbaatar, J.; Nesterenko, D.; Ragnarsson, I.; Schaffner, H.; Schweikhard, L.; Stolze, S.; Wenzl, J.

    2017-09-01

    An experimental scheme combining the mass resolving power of a Penning trap with contemporary decay spectroscopy has been established at GSI Darmstadt. The Universal Linear Accelerator (UNILAC) at GSI Darmstadt provided a 48Ca beam impinging on a thin 170Er target foil. Subsequent to velocity filtering of reaction products in the Separator for Heavy Ion reaction Products (SHIP), the nuclear ground state of the 5 n evaporation channel 213Ra was mass-selected in SHIPTRAP, and the 213Ra ions were finally transferred into an array of silicon strip detectors surrounded by large composite germanium detectors. Based on comprehensive geant4 simulations and supported by theoretical calculations, the spectroscopic results call for a revision of the decay path of 213Ra, thereby exemplifying the potential of a combination of a mass-selective Penning trap device with a dedicated nuclear decay station and contemporary geant4 simulations.

  6. Determination of nitrogen dioxide in ambient air employing diffuse reflectance Fourier transform infrared spectroscopy

    NASA Astrophysics Data System (ADS)

    Verma, Santosh Kumar; Deb, Manas Kanti; Verma, Devsharan

    2008-10-01

    This paper presents the development of a simple and precise analytical method for the determination of nitrogen dioxide in ambient air. In this method nitrogen dioxide is determined in the form of nitrite. The determination of nitrogen dioxide needs no reagents except for a solution of sodium hydroxide mixed with sodium arsenite (NaOH-Na 2As 2O 3) which is used as an absorbing reagent for trapping the nitrogen dioxide from the atmosphere in the form of nitrite, i.e., a prior analysis step. The determination of submicrogram levels of nitrogen dioxide is based on the selection of a strong and sharp quantitative analytical peak at 1380 cm - 1 using diffuse reflectance infrared spectroscopy (DRS-FTIR). The limit of detection (LOD) and the limit of quantification of the method are found to be 0.008 μg g - 1 NO 2- and 0.05 μg g - 1 NO 2-, respectively. The precision in terms of standard deviation and relative standard deviation value at a level of 2 μg NO 2- / 0.1 g KBr for n = 10 is found to be 0.036 μg NO 2- and 1.8%, respectively. The relative standard deviation ( n = 10) for the determination of nitrogen dioxide in ambient air was observed to be in the range 2.6-3.8%. The method proposed is time-saving and eliminates the slow and cumbersome steps of pH maintenance of the reaction mixture and color formation of the EPA recommended spectrophotometric and other methods for quantitative determination of nitrogen dioxide.

  7. Nutritional evaluation of commercial dry dog foods by near infrared reflectance spectroscopy.

    PubMed

    Alomar, D; Hodgkinson, S; Abarzúa, D; Fuchslocher, R; Alvarado, C; Rosales, E

    2006-06-01

    Near infrared reflectance spectroscopy (NIRS) was used to predict the nutritional value of dog foods sold in Chile. Fifty-nine dry foods for adult and growing dogs were collected, ground and scanned across the visible/NIR range and subsequently analysed for dry matter (DM), crude protein (CP), crude fibre (CF), total fat, linoleic acid, gross energy (GE), estimated metabolizable energy (ME) and several amino acids and minerals. Calibration equations were developed by modified partial least squares regression, and tested by cross-validation. Standard error of cross validation (SE(CV)) and coefficient of determination of cross validation (SE(CV)) were used to select best equations. Equations with good predicting accuracy were obtained for DM, CF, CP, GE and fat. Corresponding values for and SE(CV) were 0.96 and 1.7 g/kg, 0.91 and 3.1 g/kg, 0.99 and 5.0 g/kg, 0.93 and 0.26 MJ/kg, 0.89 and 12.4 g/kg. Several amino acids were also well predicted, such as arginine, leucine, isoleucine, phenylalanine-tyrosine (combined), threonine and valine, with values for and SE(CV) (g/kg) of 0.89 and 0.9, 0.94 and 1.3, 0.91 and 0.5, 0.95 and 0.9, 0.91 and 0.5, 0.93 and 0.5. Intermediate values, appropriate for ranking purposes, were obtained for ME, histidine, lysine and methionine-cysteine. Tryptophan, minerals or linoleic acid were not acceptably predicted, irrespective of the mathematical treatment applied. It is concluded that NIR can be successfully used to predict important nutritional characteristics of commercial dog foods.

  8. [Component analysis of complex mixed solution based on multidimensional diffuse reflectance spectroscopy].

    PubMed

    Li, Gang; Xiong, Chan; Zhao, Li-ying; Lin, Ling; Tong, Ying; Zhang, Bao-ju

    2012-02-01

    In the present paper, the authors proposed a method for component analysis of complex mixed solutions based on multidimensional diffuse reflectance spectroscopy by analyzing the information carried by spectrum signals from various optical properties of various components of the analyte. The experiment instrument was designed with supercontinuum laser source, the motorized precision translation stage and the spectrometer. The Intralipid-20% was taken as an analyte, and was diluted over a range of 1%-20% in distilled water. The diffuse reflectance spectrum signal was measured at 24 points within the distance of 1.5-13 mm (at an interval of 0.5 mm) above the incidence point. The partial least squares algorithm model was used to perform a modeling and forecasting analysis for the spectral analysis data collected from single-point and multi-point. The results showed that the most accurate calibration model was created by the spectral data acquired from the nearest 1-13 points above the incident point; the most accurate prediction model was created by the spectral signal acquired from the nearest 1-7 points above the incident point. It was proved that multidimensional diffuse reflectance spectroscopy can improve the spectral signal to noise ratio. Compared with the traditional spectrum technology using a single optical property such as absorbance or reflectance, this method increased the impact of scattering characteristics of the analyte. So the use of a variety of optical properties of the analytes can make an improvement of the accuracy of the modeling and forecasting, and also provide a basis for component analysis of the complex mixed solution based on multidimensional diffuse reflectance spectroscopy.

  9. A partial least squares model for non-volatile residue quantification using diffuse reflectance infrared reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Chen, Amylynn; Moision, Robert M.

    2016-09-01

    Traditionally, quantification of non-volatile residue (NVR) on surfaces relevant to space systems has been performed using solvent wipes for NVR removal followed by gravimetric analysis. In this approach the detectable levels of NVR are ultimately determined by the mass sensitivity of the analytical balance employed. Unfortunately, for routine samples, gravimetric measurement requires large sampling areas, on the order of a square foot, in order to clearly distinguish sample and background levels. Diffuse Reflectance Infrared Reflectance Spectroscopy (DRIFTS) is one possible alternative to gravimetric analysis for NVR measurement. DRIFTS is an analytical technique used for the identification and quantification of organic compounds that has two primary advantages relative to gravimetric based methods: increased sensitivity and the ability to identify classes of organic species present. However, the use of DRIFTS is not without drawbacks, most notably repeatability of sample preparation and the additive quantification uncertainty arising from overlapping infrared signatures. This can result in traditional calibration methods greatly overestimating the concentration of species in mixtures. In this work, a partial least squares (PLS) regression model is shown to be an effective method for removing the over prediction error of a three component mixture of common contaminant species.

  10. Combined reflectance spectroscopy and stochastic modeling approach for noninvasive hemoglobin determination via palpebral conjunctiva

    PubMed Central

    Kim, Oleg; McMurdy, John; Jay, Gregory; Lines, Collin; Crawford, Gregory; Alber, Mark

    2014-01-01

    Abstract A combination of stochastic photon propagation model in a multilayered human eyelid tissue and reflectance spectroscopy was used to study palpebral conjunctiva spectral reflectance for hemoglobin (Hgb) determination. The developed model is the first biologically relevant model of eyelid tissue, which was shown to provide very good approximation to the measured spectra. Tissue optical parameters were defined using previous histological and microscopy studies of a human eyelid. After calibration of the model parameters the responses of reflectance spectra to Hgb level and blood oxygenation variations were calculated. The stimulated reflectance spectra in adults with normal and low Hgb levels agreed well with experimental data for Hgb concentrations from 8.1 to 16.7 g/dL. The extracted Hgb levels were compared with in vitro Hgb measurements. The root mean square error of cross‐validation was 1.64 g/dL. The method was shown to provide 86% sensitivity estimates for clinically diagnosed anemia cases. A combination of the model with spectroscopy measurements provides a new tool for noninvasive study of human conjunctiva to aid in diagnosing blood disorders such as anemia. PMID:24744871

  11. Prediction of tablets disintegration times using near-infrared diffuse reflectance spectroscopy as a nondestructive method.

    PubMed

    Donoso, M; Ghaly, Evone S

    2005-01-01

    The goals of this study are to user near-infrared reflectance (NIR) spectroscopy to measure the disintegration time of a series of tablets compacted at different compressional forces, calibrate NIR data vs. laboratory equipment data, develop a model equation, validate the model, and test the model's predictive ability. Seven theophylline tablet formulations of the same composition but with different disintegration time values (0.224, 1.141, 2.797, 5.492, 9.397, 16.8, and 30.092 min) were prepared along with five placebo tablet formulations with different disintegration times. Laboratory disintegration time was compared to near-infrared diffuse reflectance data. Linear regression, quadratic, cubic, and partial least square techniques were used to determine the relationship between disintegration time and near-infrared spectra. The results demonstrated that an increase in disintegration time produced an increase in near-infrared absorbance. Series of model equations, which depended on the mathematical technique used for regression, were developed from the calibration of disintegration time using laboratory equipment vs. the near-infrared diffuse reflectance for each formulation. The results of NIR disintegration time were similar to laboratory tests. The near-infrared diffuse reflectance spectroscopy method is an alternative nondestructive method for measurement of disintegration time of tablets.

  12. Majorana Zero Mode Detected with Spin Selective Andreev Reflection in the Vortex of a Topological Superconductor.

    PubMed

    Sun, Hao-Hua; Zhang, Kai-Wen; Hu, Lun-Hui; Li, Chuang; Wang, Guan-Yong; Ma, Hai-Yang; Xu, Zhu-An; Gao, Chun-Lei; Guan, Dan-Dan; Li, Yao-Yi; Liu, Canhua; Qian, Dong; Zhou, Yi; Fu, Liang; Li, Shao-Chun; Zhang, Fu-Chun; Jia, Jin-Feng

    2016-06-24

    Recently, theory has predicted a Majorana zero mode (MZM) to induce spin selective Andreev reflection (SSAR), a novel magnetic property which can be used to detect the MZM. Here, spin-polarized scanning tunneling microscopy or spectroscopy has been applied to probe SSAR of MZMs in a topological superconductor of the Bi_{2}Te_{3}/NbSe_{2} heterostructure. The zero-bias peak of the tunneling differential conductance at the vortex center is observed substantially higher when the tip polarization and the external magnetic field are parallel rather than antiparallel to each other. This spin dependent tunneling effect provides direct evidence of MZM and reveals its magnetic property in addition to the zero energy modes. Our work will stimulate MZM research on these novel physical properties and, hence, is a step towards experimental study of their statistics and application in quantum computing.

  13. Determination of Cellulose Fiber Structure Using IR Reflectance Spectroscopy of Paper

    NASA Astrophysics Data System (ADS)

    Derkacheva, O. Yu.

    2015-01-01

    A rapid and non-destructive method for analyzing the structure of cellulose fibers using IR reflectance spectroscopy from a paper surface was developed and verified for correctness. IR absorption and reflectance spectra of standard paper samples of known composition (sheets made of four fibers of different origin without additives and with additives of kaolin and chalk) were analyzed. Good correlations between these two spectral methods were found for the studied samples. Calibration curves were useful for assessing the structure of cellulose samples from XVIth century historical paper. Data on the degree of cellulose ordering that were obtained from the paper reflectance spectra indicated that the studied sheets consisted mainly of flax fibers with added cotton. This agreed fully with the historical fact that the studied samples were rag papers.

  14. Measuring the Complex Optical Conductivity of Graphene by Fabry-Pérot Reflectance Spectroscopy

    PubMed Central

    Ghamsari, Behnood G.; Tosado, Jacob; Yamamoto, Mahito; Fuhrer, Michael S.; Anlage, Steven M.

    2016-01-01

    We have experimentally studied the dispersion of optical conductivity in few-layer graphene through reflection spectroscopy at visible wavelengths. A laser scanning microscope (LSM) with a supercontinuum laser source measured the frequency dependence of the reflectance of exfoliated graphene flakes, including monolayer, bilayer and trilayer graphene, loaded on a Si/SiO2 Fabry-Pérot resonator in the 545–700 nm range. The complex refractive index of few-layer graphene, n − ik, was extracted from the reflectance contrast to the bare substrate. It was found that each few-layer graphene possesses a unique dispersionless optical index. This feature indicates that the optical conductivity does not simply scale with the number of layers, and that inter-layer electrodynamics are significant at visible energies. PMID:27682974

  15. A method to improve the reproducibility of in vivo reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Douplik, Alexandre; Shalaby, David; Wilson, Brian C.; Perry, Joseph

    2005-04-01

    The goal of this study was to optimize measurement techniques for tissue point spectroscopy during gastrointestinal (GI) endoscopy, as part of a program to enhance and apply autofluorescence/reflectance imaging for early GI cancer detection. The effect of fiberoptic probe pressure on tissue on the measured diffuse reflectance spectra was evaluated, with both fiber-to-fiber probe geometry (standard contact probe) and imaging illumination geometry (wide field illumination and fiber collection) for the wavelength range 440-640 nm, using normal skin in vivo as a model tissue, and by taking continuous spectral measurements while the fiber is approaching the tissue. The most significant finding was a sudden change in the reflectance signal that occurs as the probe comes into contact with the tissue surface.

  16. Particular features of the application of IR reflection spectroscopy methods in studies in archeology and paleontology

    NASA Astrophysics Data System (ADS)

    Zolotarev, V. M.; Khlopachev, G. A.

    2013-06-01

    We have considered an optical model of a porous rough surface with optical properties of objects (bone, flint) that are typical of archeology and paleontology. We have formulated an approach that makes it possible to perform mathematical processing of the IR reflection spectra of objects of this kind using standard algorithms and determine criteria that ensure obtaining reliable information on objects with a rough surface in the course of interpretation of frequencies in their IR reflection spectra. The potential of the approach has been demonstrated using as an example an investigation by the IR Fourier-transform reflection spectroscopy of mineralization processes of mammoth tusks from two paleolithic sites (14000 and 16000 BCE) located by the town of Yudinovo, Bryansk oblast, Russia.

  17. Transmission and Reflection Terahertz Spectroscopy of Insensitive Melt-Cast High-Explosive Materials

    NASA Astrophysics Data System (ADS)

    Palka, Norbert; Szala, Mateusz

    2016-10-01

    Currently, artillery shells and grenades that are introduced into the market are based on melt-castable insensitive high explosives (IHEs), which do not explode while they run a risk of impact, heat or shrapnel. Particles of explosives (such as hexogen, nitroguanidine and nitrotriazolone) are suspended in different proportions in a matrix of 2.4-dinitroanisole. In this paper, we investigated samples of commonly used IHEs: PAX-41, IMX-104 and IMX-101, whose internal structures were determined by a scanning electron microscope. Terahertz time domain spectroscopy was applied in both transmission and reflection configurations. At first, the complex refraction indices of four pure constituents creating IHEs were determined and became the basis of further calculations. Next, the experimentally determined transmission and reflection spectra of IHEs and pure constituents were compared with theoretical considerations. The influence of the grain size of constituent material and scattering on the reflection spectra was analysed, and good agreement between the experimental and theoretical data was achieved.

  18. Study of normal, fibrous and calcified aortic valve tissue by Raman and reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Rodrigues, Kátia Calligaris; Munin, Egberto; Alves, Leandro P.; Silveira, Fabrício L.; Junior, Landulfo S.; De Lima, Carlos J.; Lázzaro, João C.; De Souza, Genivaldo C.; Piotto, José A. B.; Pacheco, Marcos T. T.; Zângaro, Renato A.

    2007-02-01

    Several studies have identified the degree of aortic valve calcification as a strong predictor both for the progression and outcome of aortic stenosis. In industrialized countries, aortic valve stenosis is most frequently caused by progressive calcification and degeneration of aortic cusps. However, there are no accurate methods to quantify the extent of aortic valve calcification. To provide a non-invasive alternative to biopsy, a range of optical methods have been investigated, including Raman and reflectance spectroscopy. A Raman spectrum can be used to access the molecular constitution of a particular tissue and classify it. Raman spectroscopy is largely used in the quantification and evaluation of human atherosclerosis, being a powerful technique for performing biochemical analysis without tissue removal. Nevertheless, increased thickness and disorganization of the collagen fibre network and extracellular matrix are known to affect the diffuse spectral reflectance of the tissue. A catheter with the "6 around 1" configuration, the central fiber transmit laser radiation to the sample and the scattered light is collected by the other six surrounding fibers, was used both for Raman and reflectance spectroscopy. A white light (krypton lamp, flashtube Model FX 1160 Perkin Elmer, USA) excitation was used for reflectance measurements. A Ti-sapphire (785nm, Spectra Physics, model 3900S, USA) laser, pumped by an argon laser (Spectra Physics, model Stabilite 2017, USA) was used as the near infrared Raman set up. Several ex-vivo spectra of aortic valve samples were analyzed. The results show a promising way to differentiate normal, fibrous and calcified tissue in aortic valve.

  19. Characterization of surface functionality of coals by photoacoustic FTIR (PAIFT) spectroscopy, reflectance infrared microspectrometry, and X-ray photoelectron spectroscopy

    SciTech Connect

    Lynch, B.M.; Lancaster, L.; Mac Phee, J.A.

    1987-04-01

    This paper illustrates detection by the technique of PhotoAcoustic Infrared Fourier Transform (PAIFT) spectroscopy of new carbonyl-type functionality at the surfaces of powdered bituminous coals, generated by both base-promoted and by thermal decomposition of precursor peroxide species, postulated as ubiquitous constituents at the surfaces of all except the most freshly prepared samples. In artificially oxidized coals, there are quantitative associations between the level of carbonyl content revealed by PAIFT spectra and plastic properties of the coals. Maceral components and mineral inclusions have been identified and characterized in sectioned, polished surfaces of Canadian bituminous coals using reflection FTIR microspectrometry; this direct examination shows promise for real-time monitoring of various reactions at surfaces.

  20. Structural changes in a polyelectrolyte multilayer assembly investigated by reflection absorption infrared spectroscopy and sum frequency generation spectroscopy.

    PubMed

    Kett, Peter J N; Casford, Michael T L; Yang, Amanda Y; Lane, Thomas J; Johal, Malkiat S; Davies, Paul B

    2009-02-12

    The structure of polyelectrolyte multilayer films adsorbed onto either a per-protonated or per-deuterated 11-mercaptoundecanoic acid (h-MUA/d-MUA) self assembled monolayer (SAM) on gold was investigated in air using two surface vibrational spectroscopy techniques, namely, reflection absorption infrared spectroscopy (RAIRS) and sum frequency generation (SFG) spectroscopy. Determination of film masses and dissipation values were made using a quartz crystal microbalance with dissipation monitoring (QCM-D). The films, containing alternating layers of the polyanion poly[1-[4-(3-carboxy-4-hydroxyphenylazo) benzenesulfonamido]-1,2-ethanediyl, sodium salt] (PAZO) and the polycation poly(ethylenimine) (PEI) built on the MUA SAM, were formed using the layer-by-layer electrostatic self-assembly method. The SFG spectrum of the SAM itself comprised strong methylene resonances, indicating the presence of gauche defects in the alkyl chains of the acid. The RAIRS spectrum of the SAM also contained strong methylene bands, indicating a degree of orientation of the methylene groups parallel to the surface normal. Changes in the SFG and RAIRS spectra when a PEI layer was adsorbed on the MUA monolayer showed that the expected electrostatic interaction between the polymer and the SAM, probably involving interpenetration of the PEI into the MUA monolayer, caused a straightening of the alkyl chains of the MUA and, consequently, a decrease in the number of gauche defects. When a layer of PAZO was subsequently deposited on the MUA/PEI film, further spectral changes occurred that can be explained by the formation of a complex PEI/PAZO interpenetrated layer. A per-deuterated MUA SAM was used to determine the relative contributions from the adsorbed polyelectrolytes and the MUA monolayer to the RAIRS and SFG spectra. Spectroscopic and adsorbed mass measurements combined showed that as further bilayers were constructed the interpenetration of PAZO into preadsorbed PEI layers was repeated, up to

  1. Variable selection in near-infrared spectroscopy: benchmarking of feature selection methods on biodiesel data.

    PubMed

    Balabin, Roman M; Smirnov, Sergey V

    2011-04-29

    During the past several years, near-infrared (near-IR/NIR) spectroscopy has increasingly been adopted as an analytical tool in various fields from petroleum to biomedical sectors. The NIR spectrum (above 4000 cm(-1)) of a sample is typically measured by modern instruments at a few hundred of wavelengths. Recently, considerable effort has been directed towards developing procedures to identify variables (wavelengths) that contribute useful information. Variable selection (VS) or feature selection, also called frequency selection or wavelength selection, is a critical step in data analysis for vibrational spectroscopy (infrared, Raman, or NIRS). In this paper, we compare the performance of 16 different feature selection methods for the prediction of properties of biodiesel fuel, including density, viscosity, methanol content, and water concentration. The feature selection algorithms tested include stepwise multiple linear regression (MLR-step), interval partial least squares regression (iPLS), backward iPLS (BiPLS), forward iPLS (FiPLS), moving window partial least squares regression (MWPLS), (modified) changeable size moving window partial least squares (CSMWPLS/MCSMWPLSR), searching combination moving window partial least squares (SCMWPLS), successive projections algorithm (SPA), uninformative variable elimination (UVE, including UVE-SPA), simulated annealing (SA), back-propagation artificial neural networks (BP-ANN), Kohonen artificial neural network (K-ANN), and genetic algorithms (GAs, including GA-iPLS). Two linear techniques for calibration model building, namely multiple linear regression (MLR) and partial least squares regression/projection to latent structures (PLS/PLSR), are used for the evaluation of biofuel properties. A comparison with a non-linear calibration model, artificial neural networks (ANN-MLP), is also provided. Discussion of gasoline, ethanol-gasoline (bioethanol), and diesel fuel data is presented. The results of other spectroscopic

  2. Surface plasmon resonance spectroscopy of single bowtie nano-antennas using a differential reflectivity method

    NASA Astrophysics Data System (ADS)

    Kaniber, M.; Schraml, K.; Regler, A.; Bartl, J.; Glashagen, G.; Flassig, F.; Wierzbowski, J.; Finley, J. J.

    2016-03-01

    We report on the structural and optical properties of individual bowtie nanoantennas both on glass and semiconducting GaAs substrates. The antennas on glass (GaAs) are shown to be of excellent quality and high uniformity reflected by narrow size distributions with standard deviations for the triangle and gap size of = 4.5 nm = 2.6 nm and = 5.4 nm = 3.8 nm, respectively. The corresponding optical properties of individual nanoantennas studied by differential reflection spectroscopy show a strong reduction of the localised surface plasmon polariton resonance linewidth from 0.21 eV to 0.07 eV upon reducing the antenna size from 150 nm to 100 nm. This is attributed to the absence of inhomogeneous broadening as compared to optical measurements on nanoantenna ensembles. The inter-particle coupling of an individual bowtie nanoantenna, which gives rise to strongly localised and enhanced electromagnetic hotspots, is demonstrated using polarization-resolved spectroscopy, yielding a large degree of linear polarization of ρmax ~ 80%. The combination of highly reproducible nanofabrication and fast, non-destructive and non-contaminating optical spectroscopy paves the route towards future semiconductor-based nano-plasmonic circuits, consisting of multiple photonic and plasmonic entities.

  3. Surface plasmon resonance spectroscopy of single bowtie nano-antennas using a differential reflectivity method

    PubMed Central

    Kaniber, M.; Schraml, K.; Regler, A.; Bartl, J.; Glashagen, G.; Flassig, F.; Wierzbowski, J.; Finley, J. J.

    2016-01-01

    We report on the structural and optical properties of individual bowtie nanoantennas both on glass and semiconducting GaAs substrates. The antennas on glass (GaAs) are shown to be of excellent quality and high uniformity reflected by narrow size distributions with standard deviations for the triangle and gap size of = 4.5 nm = 2.6 nm and = 5.4 nm = 3.8 nm, respectively. The corresponding optical properties of individual nanoantennas studied by differential reflection spectroscopy show a strong reduction of the localised surface plasmon polariton resonance linewidth from 0.21 eV to 0.07 eV upon reducing the antenna size from 150 nm to 100 nm. This is attributed to the absence of inhomogeneous broadening as compared to optical measurements on nanoantenna ensembles. The inter-particle coupling of an individual bowtie nanoantenna, which gives rise to strongly localised and enhanced electromagnetic hotspots, is demonstrated using polarization-resolved spectroscopy, yielding a large degree of linear polarization of ρmax ~ 80%. The combination of highly reproducible nanofabrication and fast, non-destructive and non-contaminating optical spectroscopy paves the route towards future semiconductor-based nano-plasmonic circuits, consisting of multiple photonic and plasmonic entities. PMID:27005986

  4. At-line prediction of fatty acid profile in chicken breast using near infrared reflectance spectroscopy.

    PubMed

    De Marchi, M; Riovanto, R; Penasa, M; Cassandro, M

    2012-03-01

    Near infrared reflectance (NIR) spectroscopy was evaluated as at-line technique to predict FA profile of chicken breast directly at the slaughterhouse. Intact breasts of 214 chickens were scanned by applying a fiber optic probe to the Pectoralis superficialis muscle. Meat samples were analyzed by gas chromatography as the reference method for the determination of FA composition. Calibration equations were developed considering NIR wavelengths between 1100 and 1830nm, and modified partial least square (MPLS) was chosen as the chemometrics method to perform the calibrations. Different mathematical pre-treatments were tested and the best calibration equation for each FA was retained. Near infrared reflectance spectroscopy did not result in satisfactory predictions of FA. The best predictions were observed for oleic acid (C18:1n-9), monounsaturated FA (MUFA), and polyunsaturated FA (PUFA), and for a few minor FA. Results suggest that for chicken breast muscle, a lean meat, it was not possible to predict FA using NIR spectroscopy as an at-line technique in the abattoir. Copyright © 2011. Published by Elsevier Ltd.

  5. Predicting field capacity, wilting point, and the other physical properties of soils using hyperspectral reflectance spectroscopy: two different statistical approaches.

    PubMed

    Arslan, Hakan; Tasan, Mehmet; Yildirim, Demet; Koksal, Eyüp Selim; Cemek, Bilal

    2014-08-01

    In this study, we examined the ability of reflectance spectroscopy to predict some of the most important soil parameters for irrigation such as field capacity (FC), wilting point (WP), clay, sand, and silt content. FC and WP were determined for 305 soil samples. In addition to these soil analyses, clay, silt, and sand contents of 145 soil samples were detected. Raw spectral reflectance (raw) of these soil samples, between 350 and 2,500-nm wavelengths, was measured. In addition, first order derivatives of the reflectance (first) were calculated. Two different statistical approaches were used in detecting soil properties from hyperspectral data. Models were evaluated using the correlation of coefficient (r), coefficient of determination (R (2)), root mean square error (RMSE), and residual prediction deviation (RPD). In the first method, two appropriate wavelengths were selected for raw reflectance and first derivative separately for each soil property. Selection of wavelengths was carried out based on the highest positive and negative correlations between soil property and raw reflectance or first order derivatives. By means of detected wavelengths, new combinations for each soil property were calculated using rationing, differencing, normalized differencing, and multiple regression techniques. Of these techniques, multiple regression provided the best correlation (P < 0.01) for selected wavelengths and all soil properties. To estimate FC, WP, clay, sand, and silt, multiple regression equations based on first(2,310)-first(2,360), first(2,310)-first(2,360), first(2,240)-first(1,320), first(2,240)-first(1,330), and raw(2,260)-raw(360) were used. Partial least square regression (PLSR) was performed as the second method. Raw reflectance was a better predictor of WP and FC, whereas first order derivative was a better predictor of clay, sand, and silt content. According to RPD values, statistically excellent predictions were obtained for FC (2.18), and estimations for

  6. Parameter estimation and analysis model selections in fluorescence correlation spectroscopy

    NASA Astrophysics Data System (ADS)

    Dong, Shiqing; Zhou, Jie; Ding, Xuemei; Wang, Yuhua; Xie, Shusen; Yang, Hongqin

    2016-10-01

    Fluorescence correlation spectroscopy (FCS) is a powerful technique that could provide high temporal resolution and detection for the diffusions of biomolecules at extremely low concentrations. The accuracy of this approach primarily depends on experimental condition requirements and the data analysis model. In this study, we have set up a confocal-based FCS system. And then we used a Rhodamine6G solution to calibrate the system and get the related parameters. An experimental measurement was carried out on one-component solution to evaluate the relationship between a certain number of molecules and concentrations. The results showed FCS system we built was stable and valid. Finally, a two-component solution experiment was carried out to show the importance of analysis model selection. It is a promising method for single molecular diffusion study in living cells.

  7. Portable, Fiber-Based, Diffuse Reflection Spectroscopy (DRS) Systems for Estimating Tissue Optical Properties

    PubMed Central

    Vishwanath, Karthik; Chang, Kevin; Klein, Daniel; Deng, Yu Feng; Chang, Vivide; Phelps, Janelle E.; Ramanujam, Nimmi

    2010-01-01

    Steady-state diffuse reflection spectroscopy is a well-studied optical technique that can provide a noninvasive and quantitative method for characterizing the absorption and scattering properties of biological tissues. Here, we compare three fiber-based diffuse reflection spectroscopy systems that were assembled to create a light-weight, portable, and robust optical spectrometer that could be easily translated for repeated and reliable use in mobile settings. The three systems were built using a broadband light source and a compact, commercially available spectrograph. We tested two different light sources and two spectrographs (manufactured by two different vendors). The assembled systems were characterized by their signal-to-noise ratios, the source-intensity drifts, and detector linearity. We quantified the performance of these instruments in extracting optical properties from diffuse reflectance spectra in tissue-mimicking liquid phantoms with well-controlled optical absorption and scattering coefficients. We show that all assembled systems were able to extract the optical absorption and scattering properties with errors less than 10%, while providing greater than ten-fold decrease in footprint and cost (relative to a previously well-characterized and widely used commercial system). Finally, we demonstrate the use of these small systems to measure optical biomarkers in vivo in a small-animal model cancer therapy study. We show that optical measurements from the simple portable system provide estimates of tumor oxygen saturation similar to those detected using the commercial system in murine tumor models of head and neck cancer. PMID:21499501

  8. The research on noninvasive detection of skin cholesterol by diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Hou, Huayi; Han, Yongsheng; Dong, Meili; Zhang, Yuanzhi; Zhu, Ling; Wang, Yikun; Liu, Yong

    2017-01-01

    Skin cholesterol is a novel biomarker to assess the risk of atherosclerotic diseases. To detect skin cholesterol noninvasively and rapidly, a system was designed based on the diffuse reflectance spectroscopy. The feasibility of this system was validated through detecting cholesterol of pig skin samples, and skin cholesterol in vivo of subjects. The experimental results showed that, diffuse reflectance absorbance integrated intensity S measured the concentration of cholesterol in the pig skin samples quantitatively. After adjusting for age, gender and other factors, it showed a significant positive correlation between S of subjects and the total cholesterol (TC), low density lipoprotein cholesterol (LDL-C) which were the main risk factors for atherosclerotic diseases with the correlation coefficients 0.860(P <0.01) and 0.787(P <0.01). The study has shown that the diffuse reflectance spectroscopy provides a noninvasive and convenient method for the detection of skin cholesterol, and the noninvasive detection of skin cholesterol in vivo will contribute to the early detection of atherosclerotic diseases.

  9. Diffuse reflectance spectroscopy for monitoring diabetic foot ulcer - A pilot study

    NASA Astrophysics Data System (ADS)

    Anand, Suresh; Sujatha, N.; Narayanamurthy, V. B.; Seshadri, V.; Poddar, Richa

    2014-02-01

    Foot ulceration due to diabetes mellitus is a major problem affecting 12-25% of diabetic subjects in their lifetime. An untreated ulcer further gets infected which causes necrosis leading to amputation of lower extremities. Early identification of risk factors and treatment for these chronic wounds would reduce health care costs and improve the quality of life for people with diabetes. Recent clinical investigations have shown that a series of factors including reduced oxygen delivery and disturbed metabolism have been observed on patients with foot ulceration due to diabetes. Also, these factors can impair the wound healing process. Optical techniques based on diffuse reflectance spectroscopy provide characteristic spectral finger prints shed light on tissue oxygenation levels and morphological composition of a tissue. This study deals with the application of diffuse reflectance intensity ratios based on oxyhemoglobin bands (R542/R580), ratios of oxy- and deoxy-hemoglobin bands (R580/R555), total hemoglobin concentration and hemoglobin oxygen saturation between normal and diabetic foot ulcer sites. Preliminary results obtained are found to be promising indicating the application of reflectance spectroscopy in the assessment of foot ulcer healing.

  10. Broadband reflectance spectroscopy for establishing a quantitative metric of vascular leak using the Miles assay

    NASA Astrophysics Data System (ADS)

    McMurdy, John; Reichner, Jonathan; Mathews, Zara; Markey, Mary; Intwala, Sunny; Crawford, Gregory

    2009-09-01

    Monitoring the physiological effects of biological mediators on vascular permeability is important for identifying potential targets for antivascular leak therapy. This therapy is relevant to treatments for pulmonary edema and other disorders. Current methods of quantifying vascular leak are in vitro and do not allow repeated measurement of the same animal. Using an in vivo diffuse reflectance optical method allows pharmacokinetic analysis of candidate antileak molecules. Here, vascular leak is assessed in mice and rats by using the Miles assay and introducing irritation both topically using mustard oil and intradermally using vascular endothelial growth factor (VEGF). The severity of the leak is assessed using broadband diffuse reflectance spectroscopy with a fiber reflectance probe. Postprocessing techniques are applied to extract an artificial quantitative metric of leak from reflectance spectra at vascular leak sites on the skin of the animal. This leak metric is calculated with respect to elapsed time from irritation in both mustard oil and VEGF treatments on mice and VEGF treatments on rats, showing a repeatable increase in leak metric with leak severity. Furthermore, effects of pressure on the leak metric are observed to have minimal effect on the reflectance spectra, while spatial positioning showed spatially nonuniform leak sites.

  11. Remote identification of the invasive tunicate Didemnum vexillum using reflectance spectroscopy.

    PubMed

    Leeuw, Thomas; Newburg, Seth O; Boss, Emmanuel S; Slade, Wayne H; Soroka, Michael G; Pederson, Judith; Chryssostomidis, Chryssostomos; Hover, Franz S

    2013-03-10

    Benthic coverage of the invasive tunicate Didemnum vexillum on Georges Bank is largely unknown. Monitoring of D. vexillum coverage is vital to understanding the impact this invasive species will have on the productive fishing grounds of Georges Bank. Here we investigate using reflectance spectroscopy as a method for remote identification of D. vexillum. Using two different systems, a NightSea Dive-Spec and a combination of LED light sources with a hyperspectral radiometer, we collected in-situ measurements of reflectance from D. vexillum colonies. In comparison to reflectance spectra of other common benthic substrates, D. vexillum appears to have a unique spectral signature between 500 and 600 nm. Measuring the slope of the spectrum between these wavelengths appears to be the most robust method for spectral identification. Using derivative analysis or principal component analysis, the reflectance spectra of D. vexillum can be identified among numerous other spectra of common benthic substrates. An optical system consisting of a radiometer, light source, and camera was deployed on a remotely operated vehicle to test the feasibility of using reflectance to assess D. vexillum coverage. Preliminary results, analyzed here, prove the method to be successful for the areas we surveyed and open the way for its use on large-scale surveys.

  12. A library based fitting method for visual reflectance spectroscopy of human skin

    NASA Astrophysics Data System (ADS)

    Verkruysse, Wim; Zhang, Rong; Choi, Bernard; Lucassen, Gerald; Svaasand, Lars O.; Nelson, J. Stuart

    2005-01-01

    The diffuse reflectance spectrum of human skin in the visible region (400-800 nm) contains information on the concentrations of chromophores such as melanin and haemoglobin. This information may be extracted by fitting the reflectance spectrum with an optical diffusion based analytical expression applied to a layered skin model. With the use of the analytical expression, it is assumed that light transport is dominated by scattering. For port wine stain (PWS) and highly pigmented human skin, however, this assumption may not be valid resulting in a potentially large error in visual reflectance spectroscopy (VRS). Monte Carlo based techniques can overcome this problem but are currently too computationally intensive to be combined with previously used fitting procedures. The fitting procedure presented herein is based on a library search which enables the use of accurate reflectance spectra based on forward Monte Carlo simulations or diffusion theory. This allows for accurate VRS to characterize chromophore concentrations in PWS and highly pigmented human skin. The method is demonstrated using both simulated and measured reflectance spectra. An additional advantage of the method is that the fitting procedure is very fast.

  13. Infrared Attenuated Total Reflectance Spectroscopy: An Innovative Strategy for Analyzing Mineral Components in Energy Relevant Systems

    NASA Astrophysics Data System (ADS)

    Müller, Christian Menno; Pejcic, Bobby; Esteban, Lionel; Piane, Claudio Delle; Raven, Mark; Mizaikoff, Boris

    2014-10-01

    The direct qualitative and quantitative determination of mineral components in shale rocks is a problem that has not been satisfactorily resolved to date. Infrared spectroscopy (IR) is a non-destructive method frequently used in mineral identification, yet challenging due to the similarity of spectral features resulting from quartz, clay, and feldspar minerals. This study reports on a significant improvement of this methodology by combining infrared attenuated total reflection spectroscopy (IR-ATR) with partial least squares (PLS) regression techniques for classifying and quantifying various mineral components present in a number of different shale rocks. The developed multivariate classification model was calibrated using pure component mixtures of the most common shale minerals (i.e., kaolinite, illite, montmorillonite, calcite, and quartz). Using this model, the IR spectra of 11 real-world shale samples were analyzed and evaluated. Finally, the performance of the developed IR-ATR method was compared with results obtained via X-ray diffraction (XRD) analysis.

  14. Infrared attenuated total reflectance spectroscopy: an innovative strategy for analyzing mineral components in energy relevant systems.

    PubMed

    Müller, Christian Menno; Pejcic, Bobby; Esteban, Lionel; Delle Piane, Claudio; Raven, Mark; Mizaikoff, Boris

    2014-10-31

    The direct qualitative and quantitative determination of mineral components in shale rocks is a problem that has not been satisfactorily resolved to date. Infrared spectroscopy (IR) is a non-destructive method frequently used in mineral identification, yet challenging due to the similarity of spectral features resulting from quartz, clay, and feldspar minerals. This study reports on a significant improvement of this methodology by combining infrared attenuated total reflection spectroscopy (IR-ATR) with partial least squares (PLS) regression techniques for classifying and quantifying various mineral components present in a number of different shale rocks. The developed multivariate classification model was calibrated using pure component mixtures of the most common shale minerals (i.e., kaolinite, illite, montmorillonite, calcite, and quartz). Using this model, the IR spectra of 11 real-world shale samples were analyzed and evaluated. Finally, the performance of the developed IR-ATR method was compared with results obtained via X-ray diffraction (XRD) analysis.

  15. Point-contact Andreev reflection spectroscopy on Bi 2 Se 3 single crystals

    DOE PAGES

    Granstrom, C. R.; Fridman, I.; Lei, H. -C.; ...

    2016-04-27

    In order to study how Andreev reflection (AR) occurs between a superconductor and a three-dimensional topological insulator (TI), we use superconducting Nb tips to perform point-contact AR spectroscopy at 4.2 K on as-grown single crystals of Bi2Se3. Scanning tunneling spectroscopy and scanning tunneling microscopy are also used to characterize the superconducting tip and both the doping level and surface condition of the TI sample. Furthermore, the point-contact measurements show clear spectral signatures of AR, as well as a depression of zero-bias conductance with decreasing junction impedance. The latter observation can be attributed to interfacial Rashba spin-orbit coupling, and the presencemore » of bulk bands at the Fermi level in our samples suggests that bulk states of Bi2Se3 are involved in the observed AR.« less

  16. An attenuated total reflectance mid infrared (ATR-MIR) spectroscopy study of gelatinization in barley.

    PubMed

    Cozzolino, D; Roumeliotis, S; Eglinton, J

    2014-08-08

    The aim of this study was to evaluate the use of attenuated total reflectance and mid infrared (ATR-MIR) spectroscopy and to understand the gelatinization and retro-gradation of flour barley samples and the relationship with malting quality. Samples were sourced from two commercial barley varieties exhibiting high hot water extract (HWE) namely Navigator (n=8), and Admiral (n=8). Samples were analysed using the Rapid Visco Analyser (RVA) and ATR-MIR analysis. These results showed that ATR-MIR spectroscopy is capable of characterising gel samples derived from barley flour samples having different malting characteristics. Infrared spectra can effectively represent a 'fingerprint' of the sample being analysed and can be used to simplify and reduce analytical times in the routine methods currently used. Copyright © 2014 Elsevier Ltd. All rights reserved.

  17. Phthalocyanine identification in paintings by reflectance spectroscopy. A laboratory and in situ study

    NASA Astrophysics Data System (ADS)

    Poldi, G.; Caglio, S.

    2013-06-01

    The importance of identifying pigments using non invasive (n.i.) analyses has gained increasing importance in the field of spectroscopy applied to art conservation and art studies. Among the large set of pigments synthesized and marketed during 20th century, surely phthalocyanine blue and green pigments occupy an important role in the field of painting (including restoration) and printing, thanks to their characteristics like brightness and fastness. This research focused on the most used phthalocyanine blue (PB15:1 and PB15:3) and green pigments (PG7), and on the possibility to identify these organic compounds using a methodology like reflectance spectroscopy in the UV, visible and near IR range (UV-vis-NIR RS), performed easily through portable instruments. Laboratory tests and three examples carried out on real paintings are discussed.

  18. Real-time reflectance-difference spectroscopy of GaAs molecular beam epitaxy homoepitaxial growth

    SciTech Connect

    Lastras-Martínez, A. E-mail: alastras@gmail.com; Ortega-Gallegos, J.; Guevara-Macías, L. E.; Nuñez-Olvera, O.; Balderas-Navarro, R. E.; Lastras-Martínez, L. F.; Lastras-Montaño, L. A.; Lastras-Montaño, M. A.

    2014-03-01

    We report on real time-resolved Reflectance-difference (RD) spectroscopy of GaAs(001) grown by molecular beam epitaxy, with a time-resolution of 500 ms per spectrum within the 2.3–4.0 eV photon energy range. Through the analysis of transient RD spectra we demonstrated that RD line shapes are comprised of two components with different physical origins and determined their evolution during growth. Such components were ascribed to the subsurface strain induced by surface reconstruction and to surface stoichiometry. Results reported in this paper render RD spectroscopy as a powerful tool for the study of fundamental processes during the epitaxial growth of zincblende semiconductors.

  19. Monitoring preparation and phase transitions of carburized W(1 1 0) by reflectance difference spectroscopy

    NASA Astrophysics Data System (ADS)

    Bachmann, Magdalena; Memmel, Norbert; Bertel, Erminald; Denk, Mariella; Hohage, Michael; Zeppenfeld, Peter

    2012-10-01

    Reflectance difference spectroscopy (RDS) is applied to follow in situ the preparation of clean and carburized W(1 1 0) surfaces and to study the temperature-induced transition between the R(15 × 3) and R(15 × 12) carbon/tungsten surface phases. RDS data for this transition are compared to data obtained from Auger-electron spectroscopy and low-energy electron diffraction. All techniques reveal that this transition, occurring around 1870 K, is reversible with a small hysteresis, indicating a first-order-like behaviour. The present results also prove a high surface sensitivity of RDS, which is attributed to the excitation of electronic p-like surface resonances of W(1 1 0).

  20. Interaction of mineral surfaces with simple organic molecules by diffuse reflectance IR spectroscopy (DRIFT)

    SciTech Connect

    Thomas, Joan E.; Kelley, Michael J.

    2008-06-01

    Diffuse reflectance Fourier-transform infrared spectroscopy (DRIFTS) was used to characterize multi-layers of lysine, glutamic acid and salicylic acid on -alumina and kaolinite surfaces. The results agreed well with those previously obtained by ATR-IR in aqueous media where available, indicating that DRIFT may be regarded as effectively an in-situ spectroscopy for these materials. In the case of salicylic acid adsorption onto γ-alumina, DRIFTS was used to identify monolayer coverage and to detect molecules down to coverage of 3% of a monolayer. The spectroscopic results as to coverage were confirmed by analysis of the solutions used for treatment. The spectra obtained allowed identification of changes in the bonding environment with increasing surface coverage. DRIFTS, offers several advantages in terms of materials, experimental technique and data treatment, motivating further investigations.

  1. Detection of aflatoxin and surface mould contaminated figs by using Fourier transform near-infrared reflectance spectroscopy.

    PubMed

    Durmuş, Efkan; Güneş, Ali; Kalkan, Habil

    2017-01-01

    Aflatoxins are toxic metabolites that are mainly produced by members of the Aspergillus section Flavi on many agricultural products. Certain agricultural products such as figs are known to be high risk products for aflatoxin contamination. Aflatoxin contaminated figs may show a bright greenish yellow fluorescence (BGYF) under ultraviolet (UV) light at a wavelength of 365 nm. Traditionally, BGYF positive figs are manually selected by workers. However, manual selection depends on the expertise level of the workers and it may cause them skin-related health problems due to UV radiation. In this study, we propose a non-invasive approach to detect aflatoxin and surface mould contaminated figs by using Fourier transform near-infrared (FT-NIR) reflectance spectroscopy. A classification accuracy of 100% is achieved for classifying the figs into aflatoxin contaminated/uncontaminated and surface mould contaminated/uncontaminated categories. In addition, a strong correlation has been found between aflatoxin and surface mould. Combined with pattern classification methods, the NIR spectroscopy can be used to detect aflatoxin contaminated figs non-invasively. Furthermore, a positive correlation between surface mould and aflatoxin contamination leads to a promising alternative indicator for the detection of aflatoxin-contaminated figs. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

  2. Application of multibounce attenuated total reflectance fourier transform infrared spectroscopy and chemometrics for determination of aspartame in soft drinks.

    PubMed

    Khurana, Harpreet Kaur; Cho, Il Kyu; Shim, Jae Yong; Li, Qing X; Jun, Soojin

    2008-02-13

    Aspartame is a low-calorie sweetener commonly used in soft drinks; however, the maximum usage dose is limited by the U.S. Food and Drug Administration. Fourier transform infrared (FTIR) spectroscopy with attenuated total reflectance sampling accessory and partial least-squares regression (PLS) was used for rapid determination of aspartame in soft drinks. On the basis of spectral characterization, the highest R2 value, and lowest PRESS value, the spectral region between 1600 and 1900 cm(-1) was selected for quantitative estimation of aspartame. The potential of FTIR spectroscopy for aspartame quantification was examined and validated by the conventional HPLC method. Using the FTIR method, aspartame contents in four selected carbonated diet soft drinks were found to average from 0.43 to 0.50 mg/mL with prediction errors ranging from 2.4 to 5.7% when compared with HPLC measurements. The developed method also showed a high degree of accuracy because real samples were used for calibration, thus minimizing potential interference errors. The FTIR method developed can be suitably used for routine quality control analysis of aspartame in the beverage-manufacturing sector.

  3. Characterization of a variable angle reflection Fourier transform infrared accessory modified for surface plasmon resonance spectroscopy.

    PubMed

    Menegazzo, Nicola; Kegel, Laurel L; Kim, Yoon-Chang; Booksh, Karl S

    2010-10-01

    The Harrick AutoSeagull variable angle reflection accessory for Fourier transform infrared (FT-IR) spectrometers provides access to various spectroscopic techniques in a highly flexible platform. In particular, its ability to perform total internal reflection measurements is of interest because it also forms the basis for surface plasmon resonance (SPR) spectroscopy in prism-based configurations. The work presented here discusses the modification of the AutoSeagull to perform SPR spectroscopy, allowing for easy incorporation of the technique into most common FT-IR spectrometers. The wavelength dependency of the dielectric constant of the plasmon-supporting metal (in our case, gold) is largely responsible for the sensitivity attributed to changes in the sample's refractive index (RI) monitored by SPR spectroscopy. Furthermore, the optical properties of gold are such that when near-infrared (NIR) and/or mid-infrared (mid-IR) wavelengths are used to excite surface plasmons, higher sensitivities to RI changes are experienced compared to surface plasmons excited with visible wavelengths. The result is that in addition to instrumental simplicity, SPR analysis on FT-IR spectrometers, as permitted by the modified AutoSeagull, also benefits from the wavelength ranges accessible. Adaptation of the AutoSeagull to SPR spectroscopy involved the incorporation of slit apertures to minimize the angular spread reaching the detector, resulting in sharper SPR "dips" but at the cost of noisier spectra. In addition, discussion of the system's analytical performance includes comparison of dip quality as a function of slit size, tailoring of the dip minima location with respect to incident angle, and sensitivity to bulk RI changes.

  4. Multitemporal spectroscopy for crop stress detection using band selection methods

    NASA Astrophysics Data System (ADS)

    Mewes, Thorsten; Franke, Jonas; Menz, Gunter

    2008-08-01

    A fast and precise sensor-based identification of pathogen infestations in wheat stands is essential for the implementation of site-specific fungicide applications. Several works have shown possibilities and limitations for the detection of plant stress using spectral sensor data. Hyperspectral data provide the opportunity to collect spectral reflectance in contiguous bands over a broad range of the electromagnetic spectrum. Individual phenomena like the light absorption of leaf pigments can be examined in detail. The precise knowledge of stress-dependent shifting in certain spectral wavelengths provides great advantages in detecting fungal infections. This study focuses on band selection techniques for hyperspectral data to identify relevant and redundant information in spectra regarding a detection of plant stress caused by pathogens. In a laboratory experiment, five 1 sqm boxes with wheat were multitemporarily measured by a ASD Fieldspec® 3 FR spectroradiometer. Two stands were inoculated with Blumeria graminis - the pathogen causing powdery mildew - and one stand was used to simulate the effect of water deficiency. Two stands were kept healthy as control stands. Daily measurements of the spectral reflectance were taken over a 14-day period. Three ASD Pro Lamps were used to illuminate the plots with constant light. By applying band selection techniques, the three types of different wheat vitality could be accurately differentiated at certain stages. Hyperspectral data can provide precise information about pathogen infestations. The reduction of the spectral dimension of sensor data by means of band selection procedures is an appropriate method to speed up the data supply for precision agriculture.

  5. Effect of probe geometry and optical properties on the sampling depth for diffuse reflectance spectroscopy

    PubMed Central

    Hennessy, Ricky; Goth, Will; Sharma, Manu; Markey, Mia K.; Tunnell, James W.

    2014-01-01

    Abstract. The sampling depth of light for diffuse reflectance spectroscopy is analyzed both experimentally and computationally. A Monte Carlo (MC) model was used to investigate the effect of optical properties and probe geometry on sampling depth. MC model estimates of sampling depth show an excellent agreement with experimental measurements over a wide range of optical properties and probe geometries. The MC data are used to define a mathematical expression for sampling depth that is expressed in terms of optical properties and probe geometry parameters. PMID:25349033

  6. Single-component reflecting objective for low-temperature imaging and spectroscopy of single nano objects

    NASA Astrophysics Data System (ADS)

    Fujiwara, Masanori; Fujiyoshi, Satoru; Matsushita, Michio

    In order to perform imaging and spectroscopy of nano-sized emitters at a temperature of a few kelvins, we have developed a single-component reflecting objective (M. Fujiwara, et al. 2009 [1]). In this work, we report a method to find the optimum numerical aperture (NA) which balances the spherical aberration on one hand and the solid angle to collect emitted photons on the other. For the objective of a focal length of 2 mm, the optimum NA was found to be 0.50 at a wavelength of 250 nm, 0.55 at 400 nm, and 0.60 at 800 nm.

  7. Preliminary Method for Direct Quantification of Colistin Methanesulfonate by Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy

    PubMed Central

    Niece, Krista L.

    2015-01-01

    Colistin use has increased in response to the advent of infections caused by multidrug-resistant organisms. It is administered parenterally as an inactive prodrug, colistin methanesulfonate (CMS). Various formulations of CMS and labeling conventions can lead to confusion about colistin dosing, and questions remain about the pharmacokinetics of CMS. Since CMS does not have strong UV absorbance, current methods employ a laborious process of chemical conversion to colistin followed by precolumn derivatization to detect formed colistin by high-performance liquid chromatography. Here, we report a method for direct quantification of colistin methanesulfonate by attenuated total reflectance Fourier transform infrared spectroscopy (ATR FTIR). PMID:26124160

  8. Thin-film absorption coefficients by attenuated-total-reflection spectroscopy.

    PubMed

    Holm, R T; Palik, E D

    1978-02-01

    The application of attenuated-total-reflection spectroscopy to the measurement of the absorption coefficient of thin films is presented. For low absorption the sensitivity of ATR is discussed in terms of the concept of an effective thickness. Both the case in which the refractive index of the film is higher and the case in which it is lower than that of the ATR trapezoid are considered. Experimental ATR data for antireflection-coating materials for laser windows is analyzed and compared with calorimetric data.

  9. Remote diffuse reflectance spectroscopy sensor for tissue engineering monitoring based on blind signal separation.

    PubMed

    Martín-Mateos, Pedro; Crespo-Garcia, Sergio; Ruiz-Llata, Marta; Lopez-Fernandez, José Ramón; Jorcano, José Luis; Del Rio, Marcela; Larcher, Fernando; Acedo, Pablo

    2014-09-01

    In this study the first results on evaluation and assessment of grafted bioengineered skin substitutes using an optical Diffuse Reflectance Spectroscopy (DRS) system with a remote optical probe are shown. The proposed system is able to detect early vascularization of skin substitutes expressing the Vascular Endothelial Growth Factor (VEGF) protein compared to normal grafts, even though devitalized skin is used to protect the grafts. Given the particularities of the biological problem, data analysis is performed using two Blind Signal Separation (BSS) methods: Principal Component Analysis (PCA) and Independent Component Analysis (ICA). These preliminary results are the first step towards point-of-care diagnostics for skin implants early assessment.

  10. Diffuse reflectance spectroscopy with a self-calibrating fiber optic probe

    PubMed Central

    Yu, Bing; Fu, Henry; Bydlon, Torre; Bender, Janelle E.; Ramanujam, Nirmala

    2009-01-01

    Calibration of the diffuse reflectance spectrum for instrument response and time-dependent fluctuation as well as interdevice variations is complicated, time consuming, and potentially inaccurate. We describe a novel fiber optic probe with a real-time self-calibration capability that can be used for tissue optical spectroscopy. The probe was tested in a number of liquid phantoms over a relevant range of tissue optical properties. Absorption and scattering coefficients are extracted with an average absolute error and standard deviation of 6.9% ± 7.2% and 3.5% ± 1.5%, respectively. PMID:18709086

  11. Terahertz time domain attenuated total reflection spectroscopy with an integrated prism system.

    PubMed

    Nakanishi, Atsushi; Kawada, Yoichi; Yasuda, Takashi; Akiyama, Koichiro; Takahashi, Hironori

    2012-03-01

    We demonstrated attenuated total reflection (ATR) spectroscopy with an integrated prism system that included a terahertz emitter, a terahertz receiver, and an ATR prism. The ATR prism had two internal off-axis parabolic mirrors for, respectively, collimating and focusing the terahertz waves. The Fresnel loss at each interface was reduced, and the total propagation efficiency was 3.36 times larger than when using a non-integrated prism system. The refractive index of water samples calculated from the experimental data showed good agreement with values reported in the literature.

  12. Determination of Moisture Content in 5-Fluorouracil using Diffuse Reflectance Infrared Spectroscopy

    NASA Astrophysics Data System (ADS)

    Singh, Parul; Jangir, Deepak Kumar; Mehrotra, Ranjana; Kandpal, H. C.

    2008-11-01

    Determination of moisture content in pharmaceuticals is very important, as moisture is mainly responsible for the degradation of drugs. The degraded drug has not only reduced efficacy but is also hazardous for health. The objective of the present work is to replace the Karl Fischer (KF) titration method used for moisture analysis with a method that is rapid, involves no toxic materials and is more effective. Diffuse reflectance infrared spectroscopy, which is explored as a potential alternate for various applications, is investigated for moisture analysis in 5-Fluorouracil, an anticancer drug.

  13. Hygrothermal degradation of 3-glycidoxypropyltrimethoxysilane films studied by neutron and X-ray reflectivity and attenuated total reflection infrared spectroscopy.

    SciTech Connect

    Tallant, David Robert; Garcia, Manuel Joseph; Majewski, Jaroslaw; Kent, Michael Stuart; Yim, Hyun

    2005-05-01

    Thin films of organosilanes have great technological importance in the areas of adhesion promotion, durability, and corrosion resistance. However, it is well-known that water can degrade organosilane films, particularly at elevated temperatures. In this work, X-ray and neutron reflectivity (XR and NR) were combined with attenuated total reflection infrared (ATR-IR) spectroscopy to study the chemical and structural changes within thin films of (3-glycidoxypropyl)trimethoxysilane (GPS) after exposure for various periods of time to air saturated with either D{sub 2}O or H{sub 2}O at 80 C. For NR and XR, ultrathin ({approx}100 {angstrom}) films were prepared by spin-coating. Both D{sub 2}O and H{sub 2}O provide neutron scattering contrast with GPS. Variations in the neutron scattering length density (SLD) profiles (a function of mass density and atomic composition) with conditioning time were measured after drying the samples out and also swelled with H{sub 2}O or D{sub 2}O vapor at room temperature. For samples that were dried out prior to measurement, little or no change was observed for H{sub 2}O conditioning up to 3.5 days, but large changes were observed after 30 days of conditioning. The range of conditioning time for this structural change was narrowed to between 4 and 10 days with XR. The SLD profiles indicated that the top portion of the GPS film was transformed into a thick low-density layer after conditioning, but the bottom portion showed little structural change. A previous NR study of as-prepared GPS films involving swelling with deuterated nitrobenzene showed that the central portion of the film has much lower cross-link density than the region nearest the substrate. The present data show that the central portion also swells to a much greater extent with water and hydrolyzes more rapidly. The chemical degradation mechanism was identified by IR as hydrolysis of siloxane bonds. For ATR-IR, GPS films were prepared by dip-coating, which resulted in a greater

  14. High-Throughput Near-Infrared Reflectance Spectroscopy for Predicting Quantitative and Qualitative Composition Phenotypes of Individual Maize Kernels

    USDA-ARS?s Scientific Manuscript database

    Near-infrared reflectance (NIR) spectroscopy can be used for fast and reliable prediction of organic compounds in complex biological samples. We used a recently developed NIR spectroscopy instrument to predict starch, protein, oil, and weight of individual maize (Zea mays) seeds. The starch, prote...

  15. Exploiting Optical Contrasts for Cervical Precancer Diagnosis via Diffuse Reflectance Spectroscopy

    NASA Astrophysics Data System (ADS)

    Chang, Vivide Tuan-Chyan

    collagen without altering the amount of collagen present. Further work would be required to elucidate the exact sources of scattering contrast observed. Common confounding variables that limit the accuracy and clinical acceptability of optical spectroscopic systems are calibration requirements and variable probe-tissue contact pressures. Our results suggest that using a real-time self-calibration channel, as opposed to conventional post-experiment diffuse reflectance standard calibration measurements, significantly improved data integrity for the extraction of scattering contrast. Extracted [total Hb] and scattering were also significantly associated with applied contact probe pressure in colposcopically normal sites. Hence, future contact probe spectroscopy or imaging systems should incorporate a self-calibration channel and ensure spectral acquisition at a consistent contact pressure to collect reliable data with enhanced absorption and scattering contrasts. Another method to enhance optical contrast is to selectively interrogate different depths in the dysplastic cervix. For instance, scattering has been shown to increase in the epithelium (increase in nuclear-to-cytoplasmic ratio) while decrease in the stroma (re-organization of the extra-cellular matrix and changes in of collagen fiber cross-links). A fiber-optic probe with 45° illumination and collection fibers with a separation distance of 330 μm was designed and constructed to selectively interrogate the cervical epithelium. Mean extraction errors from liquid phantoms with optical properties mimicking the cervical epithelium for μa and μs' were 11.3 % and 12.7 %, respectively. Diffuse reflectance spectra from 9 sites in four loop electrosurgical excision procedure (LEEP) patients were analyzed. Preliminary data demonstrate the utility of the oblique fiber geometry in extracting scattering contrast in the cervical epithelium. Further work is needed to study the systematic error in optical property extraction and

  16. Andreev Reflection Spectroscopy on Single Crystals of Bismuth-Chalcogenide Topological Insulators

    NASA Astrophysics Data System (ADS)

    Granstrom, Chris; Fridman, Igor; Wei, J. Y. T.; Lei, Hechang; Petrovic, Cedomir

    2014-03-01

    Topological insulators have received great research interest in recent years. One salient feature of these materials is the helical spin polarization of their electronic surface states. Andreev reflection, a fundamental process that occurs between a superconductor and conducting material, has often been used to probe the spin polarization of various magnetic materials. In this work, we use superconducting Nb tips to make cryomagnetic Andreev reflection spectroscopy measurements on bismuth-chalcogenide single crystals. We analyze our spectral data, which show Andreev-like features, in the context of both calculated and measured spin-dependent band structures of these topological insulators. Work supported by NSERC, CFI-OIT and the Canadian Institute for Advanced Research. Work at Brookhaven is supported by the U.S. DOE under contract No. DE-AC02-98CH10886.

  17. Characterization of aqueous alcohol solutions in bottles with THz reflection spectroscopy.

    PubMed

    Jepsen, Peter U; Jensen, Jens K; Møller, Uffe

    2008-06-23

    We demonstrate a method based on self-referenced THz time-domain spectroscopy for inspection of aqueous liquids, and in particular alcohol solutions, inside closed containers. We demonstrate that it is possible to determine the alcohol content of an aqueous solution, and that liquids can be classified as either harmless or inflammable. The method operates in reflection mode with the result that liquids opaque to THz radiation can be characterized with little influence of the bottle shape. The method works with plastic bottles as well as glass bottles, with absorption of THz radiation by the plastic or the glass being the limiting factor. The reflection mode allows for automatic control of the validity of the measurement. The method will be useful in liquid scanning systems at security checkpoints.

  18. Sediment mineralogy based on visible and near-infrared reflectance spectroscopy

    USGS Publications Warehouse

    Jarrard, R.D.; Vanden Berg, M.D.; ,

    2006-01-01

    Visible and near-infrared spectroscopy (VNIS) can be used to measure reflectance spectra (wavelength 350-2500 nm) for sediment cores and samples. A local ground-truth calibration of spectral features to mineral percentages is calculated by measuring reflectance spectra for a suite of samples of known mineralogy. This approach has been tested on powders, core plugs and split cores, and we conclude that it works well on all three, unless pore water is present. Initial VNIS studies have concentrated on determination of relative proportions of carbonate, opal, smectite and illite in equatorial Pacific sediments. Shipboard VNIS-based determination of these four components was demonstrated on Ocean Drilling Program Leg 199. ?? The Geological Society of London 2006.

  19. Reflection terahertz time-domain spectroscopy of RDX and HMX explosives

    NASA Astrophysics Data System (ADS)

    Choi, Kyujin; Hong, Taeyoon; Ik Sim, Kyung; Ha, Taewoo; Cheol Park, Byung; Hyuk Chung, Jin; Gyeong Cho, Soo; Hoon Kim, Jae

    2014-01-01

    We report on our study of RDX and HMX, two of the most commonly used explosive materials, in bulk pellets with reflection terahertz time-domain spectroscopy in the frequency range of 0.3-3 THz. The maximum entropy method was utilized to correct our raw reflection data against the phase error due to the relative displacement between the sample and the reference. Both the refractive index n and the extinction coefficient k in the terahertz region were acquired for these two explosives without a Kramers-Kronig analysis. Both RDX and HMX exhibit a series of distinct peaks not quite detectable in the more conventional transmission-type measurements due to their high terahertz absorptivity. Our results are compared with the literature data on powder samples.

  20. Dry film preparation from whole blood, plasma and serum for quantitative infrared diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Bittner, A.; Heise, H. M.

    1998-06-01

    The potential of infrared spectroscopy in the analysis of biotic fluids for the determination of important clinical parameters such as glucose and other blood substrates has been investigated. For this purpose dried films from whole blood, blood plasma and serum were prepared on diffusely reflecting gold-coated substrates from sandpaper of different grades. This enabled measurements in the mid and near infrared spectral ranges by using special diffuse reflectance accessories. The removal of water leads to a considerable enrichment of the fluid constituents. Due to the reduced sample complexity a considerable gain in spectral information is obtained. This is especially valid for measurements in the near infrared where the problems associated with variability in the spectra of aqueous samples due to several parameters, i.e., temperature, electrolyte content etc., are well known. Additionally, mid infrared studies were carried out into the stability of dried samples.

  1. [Detection of erucic acid and glucosinolate in intact rapeseed by near-infrared diffuse reflectance spectroscopy].

    PubMed

    Riu, Yu-kui; Huang, Kun-lun; Wang, Wei-min; Guo, Jing; Jin, Yin-hua; Luo, Yun-bo

    2006-12-01

    With the rapid development of transgenic food, more and more transgenic food has been pouring into the market, raising great concern about transgenic food' s edible safety. To analyze the content of erucic acid and glucosinolate in transgenic rapeseed and its parents, all the seeds were scanned intact by continuous wave of near infrared diffuse reflectance spectrometry ranging from 12 000 to 4 000 cm(-1) with a resolution of 4 cm(-1) and 64 times of scanning. Bruker OPUS software package was applied for quantification, while the results were compared with the standard methods. The results showed that the method of NIRS was very precise, which proved that infrared diffuse reflectance spectroscopy can be applied to detect the toxins in transgenic food. On the other hand, the results also showed that the content of erucic acid in transgenic rapeseeds is 0. 5-1. 0 times

  2. The comparison for leaf nitrogen estimating in rice by chlorophyll meters and reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Lin, Fenfang; Wang, Ke

    Handheld chlorophyll sensors is a very important technique to determine the timing and number of N applications, which can improve the fertilizer-N use efficiency and monitor leaf N status of irrigated rice. One solution-culture and two field experiments with four rice genotypes were conducted to obtain variables reflecting nitrogen (N) status at different developmental stages. The paper systemically compared SPAD indices calculated from the SPAD readings of various leaf positions and hyperspectral vegetation indices. The results showed that the indices RSI and RDSI were more reliable SPAD indices for estimating foliar N status in rice plant; In addition, from view of quickness and cheapness, chlorophyll meters are more suitable for estimating foliar N status in rice than reflectance spectroscopy on the basis of meeting accuracy requirements.

  3. [Nondestructive analysis and identification of pigments on colored relics by fiber optic reflectance spectroscopy].

    PubMed

    Wang, Li-qin; Dang, Gao-chao; Zhao, Jing

    2008-08-01

    and reliable, and verified by XRF analysis. Fiber optics reflectance spectroscopy is a new quick analytical technique to identify pigments on colored relics.

  4. Determination of airborne wood dust in Button samples by diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS).

    PubMed

    Kwon, Cheol-Woong; Chirila, Madalina M; Lee, Taekhee; Harper, Martin; Rando, Roy J

    2013-01-01

    Emerging concerns regarding the toxicity of inhaled wood dust support the need for techniques to quantitate wood content of mixed industrial dusts. The diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) analysis technique was applied to the determination of wood content of 181 inhalable dust samples (geometric mean concentration: 0.895 mg/m(3); geometric standard deviation: 2.73) collected from six wood product industry factories using 25mm glass fibre filters with the Button aerosol sampler. Prior to direct DRIFTS analysis the filter samples were treated with ethyl acetate and re-deposited uniformly. Standards ranging from 125 μg to 4000 μg were prepared for red oak, southern yellow pine, and red cedar and used for quantitation of samples depending upon the wood materials present at a given factory. The oak standards spectra were quantitated by linear regression of response in Kubelka-Munk units at 1736 cm(-1), whereas the pine standards and the cedar standards spectra were quantitated by polynomial regression of response in log 1/R units at 1734 cm(-1), with the selected wavenumbers corresponding to stretching vibration of free C=O from cellulose and hemicelluloses. For one factory which used both soft- and hardwoods, a separate polynomial standard curve was created by proportionally combining the oak and pine standards polynomial regression equations based on response (log 1/R) at 1734 cm(-1). The analytical limits of detection were approximately 52 μg of oak, 20 μg of pine, 30 μg of cedar, and 16 μg of mixed oak and pine for the factory with mixed woods. Overall, the average of dry wood dust percentage of inhalable dust was approximately 56% and the average dry wood dust weight was 0.572mg for the Button samples. Across factories, there were statistically significant differences (p<0.001) for the percentage of dry wood dust in inhalable dust with factory averages ranging from 33.5 to 97.6%.

  5. Determination of airborne wood dust in Button samples by diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS)

    PubMed Central

    Kwon, Cheol-Woong; Chirila, Madalina M.; Lee, Taekhee; Harper, Martin; Rando, Roy J.

    2015-01-01

    Emerging concerns regarding the toxicity of inhaled wood dust support the need for techniques to quantitate wood content of mixed industrial dusts. The diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) analysis technique was applied to the determination of wood content of 181 inhalable dust samples (geometric mean concentration: 0.895 mg/m3; geometric standard deviation: 2.73) collected from six wood product industry factories using 25mm glass fibre filters with the Button aerosol sampler. Prior to direct DRIFTS analysis the filter samples were treated with ethyl acetate and re-deposited uniformly. Standards ranging from 125 μg to 4000 μg were prepared for red oak, southern yellow pine, and red cedar and used for quantitation of samples depending upon the wood materials present at a given factory. The oak standards spectra were quantitated by linear regression of response in Kubelka-Munk units at 1736 cm−1, whereas the pine standards and the cedar standards spectra were quantitated by polynomial regression of response in log 1/R units at 1734 cm−1, with the selected wavenumbers corresponding to stretching vibration of free C=O from cellulose and hemicelluloses. For one factory which used both soft- and hardwoods, a separate polynomial standard curve was created by proportionally combining the oak and pine standards polynomial regression equations based on response (log 1/R) at 1734 cm−1. The analytical limits of detection were approximately 52 μg of oak, 20 μg of pine, 30 μg of cedar, and 16 μg of mixed oak and pine for the factory with mixed woods. Overall, the average of dry wood dust percentage of inhalable dust was approximately 56% and the average dry wood dust weight was 0.572mg for the Button samples. Across factories, there were statistically significant differences (p<0.001) for the percentage of dry wood dust in inhalable dust with factory averages ranging from 33.5 to 97.6%. PMID:26526539

  6. Evaluating Reflectance Spectroscopy as a Method of Rapid Cryptotephra Identification using Component Analysis: Tephrochronology of the Lesser Antilles Arc

    NASA Astrophysics Data System (ADS)

    Fisher, E. A.

    2015-12-01

    The reactivation of Montserrat's South Soufrière-Soufrière Hills volcanic complex has impelled the creation of tephrochronologic records in the Lesser Antilles Arc in order to assess volcanic hazards to human safety. Developing an eruptive history of Montserrat by recording tephra layers preserved in marine sediment is hindered by the lack of a rapid, non-destructive method for detecting cryptotephra, tephra deposits invisible to the naked eye, in marine cores. Identifying cryptotephra is important because some cryptotephra layers represent primary tephra emplacement from small proximal eruptions, events that if excluded from a volcanic record could mischaracterize a volcano's eruptive frequency over time. VSWIR [0.4-2.5 μm] reflectance spectroscopy is a candidate for rapid, non-destructive cryptotephra detection in marine sediment cores because it can detect tephra in hemipelagic sediment using summary parameters sensitive to iron content and clay minerals (McCanta et al. 2014, AGU abstract OS53D-1086). Spectra from marine cores U1396C-1H-1A through U1396C-1H-5A, collected during International Ocean Discovery Program (IODP) mission 340, reveal 29 potential cryptotephra layers (McCanta et al. 2014, AGU abstract OS53D-1086). This study seeks to determine the effectiveness of reflectance spectroscopy at identifying cryptotephra by measuring the abundance of volcanic materials (i.e., glass shards/vesicular pumice and non-vesicular lava clasts) in these layers ( LeFriant et al. 2008; Cassidy et al. 2014). Component analysis was conducted on select core intervals with both cryptotephra-identifying peaks in reflectance parameters, and tephra-indicative peaks in core scanning XRF and magnetic susceptibility parameters (McCanta et al. 2014, AGU abstract OS53D-1086). Samples in this subset show abundances of non-vesicular lava and vesicular pumice clasts above expected background abundances, supporting the existence of cryptotephra at these locations (Fig. 1; LeFriant et

  7. Noninvasive blood glucose sensing on human body with near-infrared reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Huang, Zhen-hao; Hao, Chang-ning; Zhang, Lin-lin; Huang, Yan-chao; Shi, Yi-qin; Jiang, Geng-ru; Duan, Jun-li

    2011-08-01

    The non-invasive blood glucose sensing method has shown its high impact on the clinic application. This can make the measurement on the clinically relevant concentrations of glucose be free from the pain of patient. The transmission spectrum study indicates that the dependence of glucose concentration on the absorbance is in linear manner for the glucose concentration in the region of 30mg/dL to 4.5×104mg/dL. By the near infrared reflection spectroscopy of fiber spectrometer, the reflection band between 1.2μm and 1.35μm can be used to correlated with the glucose concentration in the range of 30 to 300 mg/dL. This reflection band is finally used to measure the glucose concentration effect in non-invasive manner, which gives the statistical significance of P value 0.02. Our experiment result shows that it is possible to get the glucose concentration by the near infrared reflection spectrum measurement on the human forefinger. This non-invasive blood glucose sensing method may useful in clinic after more experiment for different people.

  8. Atomic layer sensitive in-situ plasma etch depth control with reflectance anisotropy spectroscopy (RAS)

    NASA Astrophysics Data System (ADS)

    Doering, Christoph; Kleinschmidt, Ann-Kathrin; Barzen, Lars; Strassner, Johannes; Fouckhardt, Henning

    2017-06-01

    Reflectance anisotropy spectroscopy (RAS) allows for in-situ monitoring of reactive ion etching (RIE) of monocrystalline III-V semiconductor surfaces. Upon use of RAS the sample to be etched is illuminated with broad-band linearly polarized light under nearly normal incidence. Commonly the spectral range is between 1.5 and 5.5 eV. Typically the spectrally resolved difference in reflectivity for light of two orthogonal linear polarizations of light is measured with respect to time - for example for cubic lattices (like the zinc blende structures of most III-V semiconductors) polarizations along the [110] and the [-110] direction. Local anisotropies on the etch front cause elliptical polarization of the reflected light resulting in the RAS signal. The time and photon energy resolved spectra of RAS include reflectometric as well as interferometric information. Light with wavelengths well above 100 nm (even inside the material) can be successfully used to monitor surface abrasion with a resolution of some tens of nanometers. The layers being thinned out act as optical interferometers resulting in Fabry-Perot oscillations of the RAS-signal. Here we report on RAS measurements assessing the surface deconstruction during dry etching. For low etch rates our experimental data show even better resolution than that of the (slow) Fabry-Perot oscillations. For certain photon energies we detect monolayer-etch-related oscillations in the mean reflectivity, which give the best possible resolution in etch depth monitoring and control, i.e. the atomic scale.

  9. Modeling changes in the hemoglobin concentration of skin with total diffuse reflectance spectroscopy.

    PubMed

    Glennie, Diana L; Hayward, Joseph E; Farrell, Thomas J

    2015-03-01

    The ability to monitor changes in the concentration of hemoglobin in the blood of the skin in real time is a key component to personalized patient care. Since hemoglobin has a unique absorption spectrum in the visible light range, diffuse reflectance spectroscopy is the most common approach. Although the collection of the diffuse reflectance spectrum with an integrating sphere (IS) has several calibration challenges, this collection method is sufficiently user-friendly that it may be worth overcoming the initial difficulty. Once the spectrum is obtained, it is commonly interpreted with a log-inverse-reflectance (LIR) or “absorbance” analysis that can only accurately monitor changes in the hemoglobin concentration when there are no changes to the nonhemoglobin chromophore concentrations which is not always the case. We address the difficulties associated with collection of the diffuse reflectance spectrum with an IS and propose a model capable of retrieving relative changes in hemoglobin concentration from the visible light spectrum. The model is capable of accounting for concentration changes in the nonhemoglobin chromophores and is first characterized with theoretical spectra and liquid phantoms. The model is then used in comparison with a common LIR analysis on temporal measurements from blanched and reddened human skin.

  10. Modeling changes in the hemoglobin concentration of skin with total diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Glennie, Diana L.; Hayward, Joseph E.; Farrell, Thomas J.

    2015-03-01

    The ability to monitor changes in the concentration of hemoglobin in the blood of the skin in real time is a key component to personalized patient care. Since hemoglobin has a unique absorption spectrum in the visible light range, diffuse reflectance spectroscopy is the most common approach. Although the collection of the diffuse reflectance spectrum with an integrating sphere (IS) has several calibration challenges, this collection method is sufficiently user-friendly that it may be worth overcoming the initial difficulty. Once the spectrum is obtained, it is commonly interpreted with a log-inverse-reflectance (LIR) or "absorbance" analysis that can only accurately monitor changes in the hemoglobin concentration when there are no changes to the nonhemoglobin chromophore concentrations which is not always the case. We address the difficulties associated with collection of the diffuse reflectance spectrum with an IS and propose a model capable of retrieving relative changes in hemoglobin concentration from the visible light spectrum. The model is capable of accounting for concentration changes in the nonhemoglobin chromophores and is first characterized with theoretical spectra and liquid phantoms. The model is then used in comparison with a common LIR analysis on temporal measurements from blanched and reddened human skin.

  11. UV-Vis Reflection-Absorption Spectroscopy at air-liquid interfaces.

    PubMed

    Rubia-Payá, Carlos; de Miguel, Gustavo; Martín-Romero, María T; Giner-Casares, Juan J; Camacho, Luis

    2015-11-01

    UV-Visible Reflection-Absorption Spectroscopy (UVRAS) technique is reviewed with a general perspective on fundamental and applications. UVRAS is formally identical to IR Reflection-Absorption Spectroscopy (IRRAS), and therefore, the methodology developed for this IR technique can be applied in the UV-visible region. UVRAS can be applied to air-solid, air-liquid or liquid-liquid interfaces. This review focuses on the use of UVRAS for studying Langmuir monolayers. We introduce the theoretical framework for a successful understanding of the UVRAS data, and we illustrate the usage of this data treatment to a previous study from our group comprising an amphiphilic porphyrin. For ultrathin films with a thickness of few nm, UVRAS produces positive or negative bands when p-polarized radiation is used, depending on the incidence angle and the orientation of dipole absorption. UVRAS technique provides highly valuable information on tilt of chromophores at the air-liquid interface, and moreover allows the determination of optical parameters. We propose UVRAS as a powerful technique to investigate the in situ optical properties of Langmuir monolayers. Copyright © 2015 Elsevier B.V. All rights reserved.

  12. Time-resolved reflectance spectroscopy for nondestructive assessment of fruit and vegetable quality

    NASA Astrophysics Data System (ADS)

    Torricelli, Alessandro; Spinelli, Lorenzo; Vanoli, Maristella; Rizzolo, Anna; Eccher Zerbini, Paola

    2007-09-01

    In the majority of food and feed, due to the microscopic spatial changes in the refractive index, visible (VIS) and near infrared (NIR) light undergoes multiple scattering events and the overall light distribution is determined more by scattering rather than absorption. Conventional steady state VIS/NIR reflectance spectroscopy can provide information on light attenuation, which depends both on light absorption and light scattering, but cannot discriminate these two effects. On the contrary, time-resolved reflectance spectroscopy (TRS) provides a complete optical characterisation of diffusive media in terms of their absorption coefficient and reduced scattering coefficient. From the assessment of the absorption and reduced scattering coefficients, information can then be derived on the composition and internal structure of the medium. Main advantages of the technique are the absolute non-invasiveness, the potentiality for non-contact measurements, and the capacity to probe internal properties with no influence from the skin. In this work we review the physical and technical issues related to the use of TRS for nondestructive quality assessment of fruit and vegetable. A laboratory system for broadband TRS, based on tunable mode-locked lasers and fast microchannel plate photomultiplier, and a portable setup for TRS measurements, based on pulsed diode lasers and compact metal-channel photomultiplier, will be described. Results on broadband optical characterisation of fruits and applications of TRS to the detection of internal defects in pears and to maturity assessment in nectarines will be presented.

  13. [Detection of benzoyl peroxide in wheat flour by NIR diffuse reflectance spectroscopy technique].

    PubMed

    Zhang, Zhi-yong; Li, Gang; Liu, Hai-xue; Lin, Ling; Zhang, Bao-ju; Wu, Xiao-rong

    2011-12-01

    Adding benzoyl peroxide (BPO) into wheat flour was prohibited by the relevant government departments since May 1, 2011. And it is of great importance to detect BPO additive amount in wheat flour quickly and accurately. Part of BPO which was added into wheat flour will be deoxidized into benzoic acid, and this make it complex to detect the original BPO additive amount. The objective of the present research is to investigate the potential of NIR diffuse reflectance spectroscopy as a way for measurement of BPO original adding amount in wheat flour. A total of 133 wheat flour samples were prepared by adding different content of BPO into pure wheat flour. Spectra data were obtained by NIR spectrometer and then denoised by wavelet transform. Ninety seven samples were taken as calibration set and other 36 samples as prediction set. Partial least squares regression (PLSR) was applied to establish the calibration model between BPO original adding contents and the spectra data. The determination coefficient of model for the calibration set is 0.8901, and root mean squared error of calibration (RMSEC) is 40.85 mg x kg(-1). The determination coefficient for the prediction set is 0.8865, and root mean squared error of prediction (RMSEP) is 44.69 mg x kg(-1). The result indicates that it is feasible to detect the BPO adding contents in wheat flour by NIR diffuse reflectance spectroscopy technique and this technique has the potential to measure some other additives in food.

  14. Characterizing the Moisture Content of Tea with Diffuse Reflectance Spectroscopy Using Wavelet Transform and Multivariate Analysis

    PubMed Central

    Li, Xiaoli; Xie, Chuanqi; He, Yong; Qiu, Zhengjun; Zhang, Yanchao

    2012-01-01

    Effects of the moisture content (MC) of tea on diffuse reflectance spectroscopy were investigated by integrated wavelet transform and multivariate analysis. A total of 738 representative samples, including fresh tea leaves, manufactured tea and partially processed tea were collected for spectral measurement in the 325–1,075 nm range with a field portable spectroradiometer. Then wavelet transform (WT) and multivariate analysis were adopted for quantitative determination of the relationship between MC and spectral data. Three feature extraction methods including WT, principal component analysis (PCA) and kernel principal component analysis (KPCA) were used to explore the internal structure of spectral data. Comparison of those three methods indicated that the variables generated by WT could efficiently discover structural information of spectral data. Calibration involving seeking the relationship between MC and spectral data was executed by using regression analysis, including partial least squares regression, multiple linear regression and least square support vector machine. Results showed that there was a significant correlation between MC and spectral data (r = 0.991, RMSEP = 0.034). Moreover, the effective wavelengths for MC measurement were detected at range of 888–1,007 nm by wavelet transform. The results indicated that the diffuse reflectance spectroscopy of tea is highly correlated with MC. PMID:23012574

  15. Characterizing the moisture content of tea with diffuse reflectance spectroscopy using wavelet transform and multivariate analysis.

    PubMed

    Li, Xiaoli; Xie, Chuanqi; He, Yong; Qiu, Zhengjun; Zhang, Yanchao

    2012-01-01

    Effects of the moisture content (MC) of tea on diffuse reflectance spectroscopy were investigated by integrated wavelet transform and multivariate analysis. A total of 738 representative samples, including fresh tea leaves, manufactured tea and partially processed tea were collected for spectral measurement in the 325-1,075 nm range with a field portable spectroradiometer. Then wavelet transform (WT) and multivariate analysis were adopted for quantitative determination of the relationship between MC and spectral data. Three feature extraction methods including WT, principal component analysis (PCA) and kernel principal component analysis (KPCA) were used to explore the internal structure of spectral data. Comparison of those three methods indicated that the variables generated by WT could efficiently discover structural information of spectral data. Calibration involving seeking the relationship between MC and spectral data was executed by using regression analysis, including partial least squares regression, multiple linear regression and least square support vector machine. Results showed that there was a significant correlation between MC and spectral data (r = 0.991, RMSEP = 0.034). Moreover, the effective wavelengths for MC measurement were detected at range of 888-1,007 nm by wavelet transform. The results indicated that the diffuse reflectance spectroscopy of tea is highly correlated with MC.

  16. [Determination of sinigrin in semen Thlaspi from Sichuan and Tibet using near infrared diffuse reflectance spectroscopy].

    PubMed

    Wang, Lei-Lei; Chen, Cong; Zhou, Min; Wang, Jian-Zhong; Luo, Xia; Huang, Guo; Ye, Li-Ming

    2009-10-01

    The objective of the present study was to develop a method for the determination of sinigrin in semen Thlaspi from Sichuan using near infrared diffuse reflectance spectroscopy. Near infrared spectra (NIR) in the region of 7,502.1-5,446.2 cm(-1) were recorded for the 246 semen Thlaspi samples containing sinigrin in the content of 1.962%-3.917%. Calibration models were established using the PLS (partial least squares). Different spectra pretreatment methods were compared. The study showed that spectral information can be extracted thoroughly by minimum and maximum normalization pretreatment methods. In this calibration model, the correlation coefficient (R2) was 0.9280, the SEC (standard deviation of the calibration sets) was 0.314 and the SEP (standard deviation of the prediction sets) was 0.388. Results indicated that near infrared diffuse reflectance spectroscopy method can be used to rapidly analyze the valid component in traditional Chinese medicine, and also can be used in the quality control of traditional Chinese medicine.

  17. UV-Vis reflection spectroscopy under variable angle incidence at the air-liquid interface.

    PubMed

    Roldán-Carmona, Cristina; Rubia-Payá, Carlos; Pérez-Morales, Marta; Martín-Romero, María T; Giner-Casares, Juan J; Camacho, Luis

    2014-03-07

    The UV-Vis reflection spectroscopy (UV-Vis-RS) in situ at the air-liquid interface provides information about tilt and aggregation of chromophores in Langmuir monolayers. This information is particularly important given in most cases the chromophore is located at the polar region of the Langmuir monolayer. This region of the Langmuir monolayers has been hardly accessible by other experimental techniques. In spite of its enormous potential, the application of UV-Vis-RS has been limited mainly to reflection measurements under light normal incidence or at lower incidence angles than the Brewster angle. Remarkably, this technique is quite sensitive to the tilt of the chromophores at values of incidence angles close to or larger than the Brewster angle. Therefore, a novel method to obtain the order parameter of the chromophores at the air-liquid interface by using s- and p-polarized radiation at different incidence angles is proposed. This method allowed for the first time the experimental observation of the two components with different polarization properties of a single UV-Vis band at the air-liquid interface. The method of UV-Vis spectroscopy under variable angle incidence is presented as a new tool for obtaining rich detailed information on Langmuir monolayers.

  18. [Evaluation of fresh sample of alfalfa silage through near infrared reflectance spectroscopy (NIRS)].

    PubMed

    Chen, Peng-Fei; Rong, Yu-Ping; Han, Jian-Guo; Wang, Ji-Hua; Zhang, Lu-Da; Xu, Xiao-Jie

    2007-07-01

    It is very important to evaluate the fresh sample of alfalfa silage using near infrared reflectance spectroscopy technology (NIRS) for animal production. The nutrient content of forage means the contents of dry matter (DM), crude protein (CP), neutral detergent fiber (NDF), and acid detergent fiber (ADF) in the forage. Because of the high moisture content, it is difficult to make uniform samples for fresh forage and to get useful information from the spectrum. Therefore, it is hard to use NIRS analysis. In order to evaluate the feasibility of using NIRS to analyse the fresh alfalfa silage, the DM, CP, NDF and ADF contents of fresh alfalfa silage were evaluated by the near infrared reflectance spectroscopy model in this experiment using partial least square regression (PLS), Fourier transform technology and sample preparation with liquid nitrogen technology. The analysis samples were obtained through different cultivars, maturity, cuttings and ensiling method. The cross validation was determined between 0.884 6-0. 989 8. The standard error of cross validation was between 3.9 and 9.7 g x kg(-1) fresh weight. Fifty samples were used to test the performance of the models. The coefficients of correlation between the chemical value and the NIRS value are between 0.939 7 and 0.994 9, and the root mean square errors of prediction are between 1.9 and 8.3 g x kg(-1) fresh weight. The results showed that NIRS could be used to evaluate the nutrition of fresh forage.

  19. [Evaluation of fermentation character of alfalfa silage through near infrared reflectance spectroscopy (NIRS)].

    PubMed

    Chen, Peng-fei; Rong, Yu-ping; Han, Jian-guo

    2008-12-01

    It is very important to evaluate the fermentation character of alfalfa silage using near infrared reflectance spectroscopy technology (NIRS) for animal production, including the content of NH3-N, lactic acid, acetic acid and butyric acid in silage. In order to evaluate the feasibility of using NIRS to analyze the formation character of alfalfa silage, the near infrared reflectance spectroscopy models were built for NH3-N, lactic acid, zcetic acid and butyric acid in this experiment. Partial least square regression (PLS), Fourier transform technology and sample preparation with liquid nitrogen technology were used to optimize the model. The analyzed samples were obtained with different cultivars, maturity, cuttings and ensiling method. The determination of cross validation was between 0.6024 and 0.9497. The standard errors of cross validation were between 5.59 x 10(-1) and 3.78 g x kg(-1) fresh weight. The validation samples were used to test the performance of the models. The correlation coefficients between the chemical value and the NIRS value were between 0.8826 and 0.9853, and the root mean square errors of prediction were between 5.71 x 10(-1) and 3.15 g x kg(-1) fresh weight. The results showed the NIRS could evaluate the fermentation of the fresh forage.

  20. Identification of mineral composition and weathering product of tuff using reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Hyun, C.; Park, H.

    2009-12-01

    Tuff is intricately composed of various types of rock blocks and ash matrixes during volcanic formation processes. Qualitative identification and quantitative assessment of mineral composition of tuff usually have been done using manual inspection with naked-eyes and various chemical analyses. Those conventional methods are destructive to objects, time consuming and sometimes carry out biased results from subjective decision making. To overcome limits from conventional methods, assessment technique using reflectance spectroscopy was applied to tuff specimens. Reflectance spectroscopy measures electromagnetic reflectance on rock surface and can extract diagnostic absorption features originated from chemical composition and crystal structure of constituents in the reflectance curve so mineral species can be discriminated qualitatively. The intrinsic absorption feature from particular mineral can be converted to absorption depth representing relative coverage of the mineral in the measurement area by removing delineated convex hull from raw reflectance curve. The spectral measurements were performed with field spectrometer FieldSpec®3 of ASD Inc. and the wavelength range of measurement was form 350nm to 2500nm. Three types of tuff blocks, ash tuff, green lapilli tuff and red lapilli tuff, were sampled from Hwasun County in Korea and the types of tuffs. The differences between green tuff and red tuff are from the color of their matrixes. Ash tuff consists of feldspars and quartz and small amount of chalcedony, calcite, dolomite, epidote and basalt fragments. Green lapilli tuff consists of feldspar, quartz and muscovite and small amount of calcite, chalcedony, sericite, chlorite, quartzite and basalt fragments. Red lapilli tuff consists of feldspar, quartz and muscovite and small amount of calcite, chalcedony, limonite, zircon, chlorite, quartzite and basalt fragments. The tuff rocks were coarsely crushed and blocks and matrixes were separated to measure standard

  1. Classification of the waxy condition of durum wheat by near infrared reflectance spectroscopy using wavelets and a genetic algorithm

    USDA-ARS?s Scientific Manuscript database

    Near infrared (NIR) reflectance spectroscopy has been applied to the problem of differentiating four genotypes of durum wheat: ‘waxy’, wx-A1 null, wx-B1 null and wild type. The test data consisted of 95 NIR reflectance spectra of wheat samples obtained from a USDA-ARS wheat breeding program. A two...

  2. High pressure sample cell for total internal reflection fluorescence spectroscopy at pressures up to 2500 bar

    NASA Astrophysics Data System (ADS)

    Koo, Juny; Czeslik, Claus

    2012-08-01

    Total internal reflection fluorescence (TIRF) spectroscopy is a surface sensitive technique that is widely used to characterize the structure and dynamics of molecules at planar liquid-solid interfaces. In particular, biomolecular systems, such as protein adsorbates and lipid membranes can easily be studied by TIRF spectroscopy. Applying pressure to molecular systems offers access to all kinds of volume changes occurring during assembly of molecules, phase transitions, and chemical reactions. So far, most of these volume changes have been characterized in bulk solution, only. Here, we describe the design and performance of a high pressure sample cell that allows for TIRF spectroscopy under high pressures up to 2500 bar (2.5 × 108 Pa), in order to expand the understanding of volume effects from the bulk phase to liquid-solid interfaces. The new sample cell is based on a cylindrical body made of Nimonic 90 alloy and incorporates a pressure transmitting sample cuvette. This cuvette is composed of a fused silica prism and a flexible rubber gasket. It contains the sample solution and ensures a complete separation of the sample from the liquid pressure medium. The sample solution is in contact with the inner wall of the prism forming the interface under study, where fluorescent molecules are immobilized. In this way, the new high pressure TIRF sample cell is very useful for studying any biomolecular layer that can be deposited at a planar water-silica interface. As examples, high pressure TIRF data of adsorbed lysozyme and two phospholipid membranes are presented.

  3. The use of UV-visible reflectance spectroscopy as an objective tool to evaluate pearl quality.

    PubMed

    Agatonovic-Kustrin, Snezana; Morton, David W

    2012-07-01

    Assessing the quality of pearls involves the use of various tools and methods, which are mainly visual and often quite subjective. Pearls are normally classified by origin and are then graded by luster, nacre thickness, surface quality, size, color and shape. The aim of this study was to investigate the capacity of Artificial Neural Networks (ANNs) to classify and estimate the quality of 27 different pearls from their UV-Visible spectra. Due to the opaque nature of pearls, spectroscopy measurements were performed using the Diffuse Reflectance UV-Visible spectroscopy technique. The spectra were acquired at two different locations on each pearl sample in order to assess surface homogeneity. The spectral data (inputs) were smoothed to reduce the noise, fed into ANNs and correlated to the pearl's quality/grading criteria (outputs). The developed ANNs were successful in predicting pearl type, mollusk growing species, possible luster and color enhancing, donor condition/type, recipient/host color, donor color, pearl luster, pearl color, origin. The results of this study shows that the developed UV-Vis spectroscopy-ANN method could be used as a more objective method of assessing pearl quality (grading) and may become a valuable tool for the pearl grading industry.

  4. The Use of UV-Visible Reflectance Spectroscopy as an Objective Tool to Evaluate Pearl Quality

    PubMed Central

    Agatonovic-Kustrin, Snezana; Morton, David W.

    2012-01-01

    Assessing the quality of pearls involves the use of various tools and methods, which are mainly visual and often quite subjective. Pearls are normally classified by origin and are then graded by luster, nacre thickness, surface quality, size, color and shape. The aim of this study was to investigate the capacity of Artificial Neural Networks (ANNs) to classify and estimate the quality of 27 different pearls from their UV-Visible spectra. Due to the opaque nature of pearls, spectroscopy measurements were performed using the Diffuse Reflectance UV-Visible spectroscopy technique. The spectra were acquired at two different locations on each pearl sample in order to assess surface homogeneity. The spectral data (inputs) were smoothed to reduce the noise, fed into ANNs and correlated to the pearl’s quality/grading criteria (outputs). The developed ANNs were successful in predicting pearl type, mollusk growing species, possible luster and color enhancing, donor condition/type, recipient/host color, donor color, pearl luster, pearl color, origin. The results of this study shows that the developed UV-Vis spectroscopy-ANN method could be used as a more objective method of assessing pearl quality (grading) and may become a valuable tool for the pearl grading industry. PMID:22851919

  5. Evaluation of vitamin C content in kiwifruit by diffuse reflectance FT-NIR spectroscopy

    NASA Astrophysics Data System (ADS)

    Fu, Xiaping; Ying, Yibin; Lu, Huishan; Yu, Haiyan; Liu, Yande

    2005-11-01

    Vitamin C is considered an important nutrition component of fruits, especially of kiwifruit. Traditional destructive method for vitamin C measurement is very complex and fussy. Near Infrared (NIR)spectroscopy is a promising technique for nondestructive measurement of fruit internal qualities, such as soluble solid content (SSC), valid acidity (VA). The objective of this research was to study the potential of NIR diffuse reflectance spectroscopy as a way for nondestructive measurement of vitamin C content in "Qinmei" kiwifruit. NIR spectral data were collected in the spectral range of 800-2500 nm with different combinations of resolution (4 cm-1, 16 cm-1 and 32 cm-1) and scan number (32, 64 and 128). Statistical models were developed using partial least square (PLS) method. The combination with resolution of 4 cm-1 and scan number of 64 gave the best result when all samples were used in calibration sample set. Then two spectral pretreatments multiplicative signal correction (MSC) and standard normal variate (SNV), and three kinds of mathematical treatment of original spectra, first derivative spectra and second derivative spectra were discussed. The PLS model of second derivative spectra using SNV pretreatment turned out better prediction results: correlation coefficient (r) of 0. 93, root mean square error of calibration (RMSEC) of 9.24 mg/100g and root mean square error of prediction (RMSEP) of 10.3 mg/100g. The results of this study showed that NIR diffuse reflectance spectroscopy could be used for kiwifruit vitamin C prediction. The higher the resolution, the better the results, but longer time will be taken, which may not be suitable for on-line use. Therefore, further research still needs to be done.

  6. Mechanism of relativistic Doppler reflection from a photoinduced moving plasma front studied by terahertz time-domain spectroscopy

    NASA Astrophysics Data System (ADS)

    Kohno, Nanase; Itakura, Ryuji; Tsubouchi, Masaaki

    2016-10-01

    We applied terahertz (THz) time-domain spectroscopy to reveal the mechanism of the relativistic Doppler reflection of THz light from a photoinduced plasma front in a silicon wafer. The frequency upshift caused by the Doppler reflection was identified by measurement of the reflected THz waveforms and compared to the calculated results obtained using the one-dimensional finite-difference time-domain method. The relation between the energy density of the pump light and the frequency upshift was also explored. We found that the interaction time of the moving plasma front and the reflected THz pulse is a key factor in understanding the mechanism of the relativistic Doppler reflection.

  7. Monte Carlo analysis of single fiber reflectance spectroscopy: photon path length and sampling depth.

    PubMed

    Kanick, S C; Robinson, D J; Sterenborg, H J C M; Amelink, A

    2009-11-21

    Single fiber reflectance spectroscopy is a method to noninvasively quantitate tissue absorption and scattering properties. This study utilizes a Monte Carlo (MC) model to investigate the effect that optical properties have on the propagation of photons that are collected during the single fiber reflectance measurement. MC model estimates of the single fiber photon path length (L(SF)) show excellent agreement with experimental measurements and predictions of a mathematical model over a wide range of optical properties and fiber diameters. Simulation results show that L(SF) is unaffected by changes in anisotropy (g epsilon [0.8, 0.9, 0.95]), but is sensitive to changes in phase function (Henyey-Greenstein versus modified Henyey-Greenstein). A 20% decrease in L(SF) was observed for the modified Henyey-Greenstein compared with the Henyey-Greenstein phase function; an effect that is independent of optical properties and fiber diameter and is approximated with a simple linear offset. The MC model also returns depth-resolved absorption profiles that are used to estimate the mean sampling depth (Z(SF)) of the single fiber reflectance measurement. Simulated data are used to define a novel mathematical expression for Z(SF) that is expressed in terms of optical properties, fiber diameter and L(SF). The model of sampling depth indicates that the single fiber reflectance measurement is dominated by shallow scattering events, even for large fibers; a result that suggests that the utility of single fiber reflectance measurements of tissue in vivo will be in the quantification of the optical properties of superficial tissues.

  8. On the prediction of threshold friction velocity of wind erosion using soil reflectance spectroscopy

    USGS Publications Warehouse

    Li, Junran; Flagg, Cody B.; Okin, Gregory S.; Painter, Thomas H.; Dintwe, Kebonye; Belnap, Jayne

    2015-01-01

    Current approaches to estimate threshold friction velocity (TFV) of soil particle movement, including both experimental and empirical methods, suffer from various disadvantages, and they are particularly not effective to estimate TFVs at regional to global scales. Reflectance spectroscopy has been widely used to obtain TFV-related soil properties (e.g., moisture, texture, crust, etc.), however, no studies have attempted to directly relate soil TFV to their spectral reflectance. The objective of this study was to investigate the relationship between soil TFV and soil reflectance in the visible and near infrared (VIS–NIR, 350–2500 nm) spectral region, and to identify the best range of wavelengths or combinations of wavelengths to predict TFV. Threshold friction velocity of 31 soils, along with their reflectance spectra and texture were measured in the Mojave Desert, California and Moab, Utah. A correlation analysis between TFV and soil reflectance identified a number of isolated, narrow spectral domains that largely fell into two spectral regions, the VIS area (400–700 nm) and the short-wavelength infrared (SWIR) area (1100–2500 nm). A partial least squares regression analysis (PLSR) confirmed the significant bands that were identified by correlation analysis. The PLSR further identified the strong relationship between the first-difference transformation and TFV at several narrow regions around 1400, 1900, and 2200 nm. The use of PLSR allowed us to identify a total of 17 key wavelengths in the investigated spectrum range, which may be used as the optimal spectral settings for estimating TFV in the laboratory and field, or mapping of TFV using airborne/satellite sensors.

  9. Feedstock and Web Analysis Using Mid-Infrared Diffuse Reflectance Spectroscopy and Imaging Spectroradiometry

    SciTech Connect

    G.L. Powell; J.E. Parks II

    1997-09-15

    Potential applications of mid-infrared (MIR) spectroscopy in the forest products industry include on-line analysis of feedstock and web materials; these applications differ dramatically in purpose, speed, and overall chemical heterogeneity. Characterization of feedstock will enable sorting of the stock and/or wet chemistry adjustment prior to the web stage of paper production. Sorting will require imaging of the stock as well as classification of the wide variety of chemistry found in recycled stock. At the opposite end of the manufacturing process, on-line analysis of the web will enable adjustment of machine parameters to maximize product quality and minimize waste. Spectroscopic requirements for web analysis include high-speed capability and measurement precision. If successful, both applications could result in a reduction of resource waste, a reduction of plant pollution, and a reduction of energy use while simultaneously improving product quality. Here the progress towards feedstock and web analysis with MIR spectroscopy is presented. To date, work has progressed in three main areas: Diffuse Reflectance mid-Infrared Fourier Transform (DRIFT) spectroscopy of cellulose-based materials, chemometrics analysis, and research of MIR instrumentation for prototype development. The DRIFT spectroscopy data represents a database of the chemistries and spectroscopic signatures of interest to the applications discussed here. Over 50,000 spectra were obtained from cellulose-based materials infised with a wide variety of non-cellulose chemistry. Chemometrics analysis was performed on the DRIFT database to determine the quantitative and qualitative limits of the technique. Emphasis was placed on qualitative evaluation of spectroscopic signatures unique to the particular classes of cellulose-based material; thus, the degree to which classes could be sorted was determined. Finally, investigations of MIR instrumentation suitable for transfer of the technique from the lab

  10. A multichannel continuously selectable multifrequency electrical impedance spectroscopy measurement system.

    PubMed

    Hartov, A; Mazzarese, R A; Reiss, F R; Kerner, T E; Osterman, K S; Williams, D B; Paulsen, K D

    2000-01-01

    There is increasing evidence that alterations in the electrical property spectrum of tissues below 10 MHz is diagnostic for tissue pathology and/or pathophysiology. Yet, the complexity associated with constructing a high-fidelity multichannel, multifrequency data acquisition instrument has limited widespread development of spectroscopic electrical impedance imaging concepts. To contribute to the relatively sparse experience with multichannel spectroscopy systems this paper reports on the design, realization and evaluation of a prototype 32-channel instrument. The salient features of the system include a continuously selectable driving frequency up to 1 MHz, either voltage or current source modes of operation and simultaneous measurement of both voltage and current on each channel in either of these driving configurations. Comparisons of performance with recently reported fixed-frequency systems is favorable. Volts dc (VDC) signal-to-noise ratios of 75-80 dB are achieved and the noise floor for ac signals is near 100 dB below the signal strength of interest at 10 kHz and 60 dB down at 1 MHz. The added benefit of being able to record multispectral information on source and sense signal amplitudes and phases has also been realized. Phase-sensitive detection schemes and multiperiod undersampling techniques have been deployed to ensure measurement fidelity over the full bandwidth of system operation.

  11. Spoilage of foods monitored by native fluorescence spectroscopy with selective excitation wavelength

    NASA Astrophysics Data System (ADS)

    Pu, Yang; Wang, Wubao; Alfano, Robert R.

    2015-03-01

    The modern food processing and storage environments require the real-time monitoring and rapid microbiological testing. Optical spectroscopy with selective excitation wavelengths can be the basis of a novel, rapid, reagent less, noncontact and non-destructive technique for monitoring the food spoilage. The native fluorescence spectra of muscle foods stored at 2-4°C (in refrigerator) and 20-24°C (in room temperature) were measured as a function of time with a selective excitation wavelength of 340nm. The contributions of the principal molecular components to the native fluorescence spectra of meat were measured spectra of each fluorophore: collagen, reduced nicotinamide adenine dinucleotide (NADH), and flavin. The responsible components were extracted using a method namely Multivariate Curve Resolution with Alternating Least-Squares (MCR-ALS). The native fluorescence combined with MCR-ALS can be used directly on the surface of meat to produce biochemically interpretable "fingerprints", which reflects the microbial spoilage of foods involved with the metabolic processes. The results show that with time elapse, the emission from NADH in meat stored at 24°C increases much faster than that at 4°C. This is because multiplying of microorganisms and catabolism are accompanied by the generation of NADH. This study presents changes of relative content of NADH may be used as criterion for detection of spoilage degree of meat using native fluorescence spectroscopy.

  12. Gradient SiNO anti-reflective layers in solar selective coatings

    DOEpatents

    Ren, Zhifeng; Cao, Feng; Sun, Tianyi; Chen, Gang

    2017-08-01

    A solar selective coating includes a substrate, a cermet layer having nanoparticles therein deposited on the substrate, and an anti-reflection layer deposited on the cermet layer. The cermet layer and the anti-reflection layer may each be formed of intermediate layers. A method for constructing a solar-selective coating is disclosed and includes preparing a substrate, depositing a cermet layer on the substrate, and depositing an anti-reflection layer on the cermet layer.

  13. Selective abortion and gene therapy: reflections on human limits.

    PubMed

    Post, S G

    1991-01-01

    The potential impact of the Human Genome Project on selective abortion is considered here, as is human gene therapy. Themes of emphasis are broadly humanistic: human suffering, contingency, and perfection. The chief concerns of the article lie with selective abortion for less than serious reasons, and with the importance of avoiding efforts to "enhance" human beings by gene transfer methods. The style is widely interdisciplinary.

  14. Ultra-narrow spectroscopic cells in atomic spectroscopy: reflection, transmission, fluorescence, and nonadiabatic transitions at the walls

    NASA Astrophysics Data System (ADS)

    Pazgalev, A.; Sarkisyan, D.; Cartaleva, S.; Przhibelskii, S.; Vartanyan, T.

    2014-11-01

    Ultra-narrow cells with the thicknesses in the range from several wavelengths to the small fractions of the wavelength brought a number of new opportunities for atomic spectroscopy. Depending on the cell thickness, spectral lines recorded in ultra-narrow cells are either Doppler-free or Doppler-broadened. With careful selection of the cell thickness hyperfine structure may be easily resolved without resorting on the multibeam nonlinear optical techniques. Moreover, frequent collisions with the walls leads to the important modifications of velocity selective optical pumping resonances. Finally, ultra-narrow cells provide with the unique opportunity to study collisions of the excited atoms with the solid surfaces. In this contribution several examples of the use of the ultra-narrow spectroscopic cells filled with the alkali atomic vapour is presented. First, we discuss general aspects of the transient polarisation that defines all peculiarities of an ultra-narrow cell as a spectroscopic tool. Second, we demonstrate the resolution of the magnetic sublevels in the transition from Zeeman to Paschen-Back regime in the Cs hyperfine structure. Third, new aspects of velocity selective optical pumping resonances in reflection and transmission of resonant radiation by the 6 wavelengths thick cell filled with Cs are discussed. Forth, the experimental evidences of the nonadiabatic transitions between excited states of Rb atoms in the course of collisions with the sapphire surface are presented.

  15. Identification of natural red and purple dyes on textiles by Fiber-optics Reflectance Spectroscopy

    NASA Astrophysics Data System (ADS)

    Maynez-Rojas, M. A.; Casanova-González, E.; Ruvalcaba-Sil, J. L.

    2017-05-01

    Understanding dye chemistry and dye processes is an important issue for studies of cultural heritage collections and science conservation. Fiber Optics Reflectance Spectroscopy (FORS) is a powerful technique, which allows preliminary dye identification, causing no damage or mechanical stress on the artworks subjected to analysis. Some information related to specific light scattering and absorption can be obtained in the UV-visible and infrared range (300-1400 nm) and it is possible to discriminate the kind of support fiber in the near infrared region (1000-2500 nm). The main spectral features of natural dye fibers samples, such as reflection maxima, inflection points and reflection minima, can be used in the differentiation of various red natural dyes. In this work, a set of dyed references were manufactured following Mexican recipes with red dyes (cochineal and brazilwood) in order to determine the characteristic FORS spectral features of fresh and aged dyed fibers for their identification in historical pieces. Based on these results, twenty-nine indigenous textiles belonging to the National Commission for the Development of Indigenous People of Mexico were studied. Cochineal and brazilwood were successfully identified by FORS in several pieces, as well as the mixture of cochineal and indigo for purple color.

  16. Identification of natural red and purple dyes on textiles by Fiber-optics Reflectance Spectroscopy.

    PubMed

    Maynez-Rojas, M A; Casanova-González, E; Ruvalcaba-Sil, J L

    2017-05-05

    Understanding dye chemistry and dye processes is an important issue for studies of cultural heritage collections and science conservation. Fiber Optics Reflectance Spectroscopy (FORS) is a powerful technique, which allows preliminary dye identification, causing no damage or mechanical stress on the artworks subjected to analysis. Some information related to specific light scattering and absorption can be obtained in the UV-visible and infrared range (300-1400nm) and it is possible to discriminate the kind of support fiber in the near infrared region (1000-2500nm). The main spectral features of natural dye fibers samples, such as reflection maxima, inflection points and reflection minima, can be used in the differentiation of various red natural dyes. In this work, a set of dyed references were manufactured following Mexican recipes with red dyes (cochineal and brazilwood) in order to determine the characteristic FORS spectral features of fresh and aged dyed fibers for their identification in historical pieces. Based on these results, twenty-nine indigenous textiles belonging to the National Commission for the Development of Indigenous People of Mexico were studied. Cochineal and brazilwood were successfully identified by FORS in several pieces, as well as the mixture of cochineal and indigo for purple color.

  17. Measuring joint cartilage thickness using reflectance spectroscopy non-invasively and in real-time

    NASA Astrophysics Data System (ADS)

    Canpolat, Murat; Denkceken, Tuba; Karagol, Cosar; Aydin, Ahmet T.

    2011-03-01

    Joint cartilage thickness has been estimated using spatially resolved steady-state reflectance spectroscopy noninvasively and in-real time. The system consists of a miniature UV-VIS spectrometer, a halogen tungsten light source, and an optical fiber probe with six 400 um diameter fibers. The first fiber was used to deliver the light to the cartilage and the other five were used to detect back-reflected diffused light. Distances from the detector fibers to the source fiber were 0.8 mm, 1.6 mm, 2.4 mm, 3.2 mm and 4 mm. Spectra of back-reflected diffused light were taken on 40 bovine patella cartilages. The samples were grouped into four; the first group was the control group with undamaged cartilages, in the 2nd, 3rd and 4th groups cartilage thickness was reduced approximately 25%, 50% and 100%, respectively. A correlation between cartilage thicknesses and hemoglobin absorption of light in the wavelength range of 500 nm- 600 nm for source-detector pairs was found. The proposed system with an optical fiber probe less than 4 mm in diameter has the potential for cartilage thickness assessment through an arthroscopy channel in real-time without damaging the cartilage.

  18. Diffuse reflectance spectroscopy as a tool to measure the absorption coefficient in skin: system calibration.

    PubMed

    Karsten, A E; Singh, A; Karsten, P A; Braun, M W H

    2013-02-01

    An individualised laser skin treatment may enhance the treatment and reduces risks and side-effects. The optical properties (absorption and scattering coefficients) are important parameters in the propagation of laser light in skin tissue. The differences in the melanin content of different skin phototypes influence the absorption of the light. The absorption coefficient at the treatment wavelength for an individual can be determined by diffuse reflectance spectroscopy, using a probe containing seven fibres. Six of the fibres deliver the light to the measurement site and the central fibre collects the diffused reflected light. This is an in vivo technique, offering benefits for near-real-time results. Such a probe, with an effective wavelength band from 450 to 800 nm, was used to calibrate skin-simulating phantoms consisting of intralipid and ink. The calibration constants were used to calculate the absorption coefficients from the diffuse reflectance measurements of three volunteers (skin phototypes, II, IV and V) for sun-exposed and non-exposed areas on the arm.

  19. Silver mirror for enhancing the detection ability of near-infrared diffuse reflectance spectroscopy.

    PubMed

    Wang, Cuicui; Wang, Shuyu; Cai, Wensheng; Shao, Xueguang

    2017-01-01

    Near-infrared diffuse reflectance spectroscopy (NIRDRS) has been proved to be a convenient and fast quantitative method for complex samples. The sensitivity or the detection limit, however, has been the obstacle in practical uses, although great efforts have been made through experimental and chemometric approaches. Due to the strong reflectivity of silver in near-infrared region, a novel method that utilizes silver layer as the adsorption substrate was developed to enhance the detection ability of NIRDRS in this study. For investigating the enhancement effect of the method, lysozyme samples with different concentrations were spotted on the silver layer and NIR spectra were measured. Then quantitative determination was performed using multivariate calibration. For comparison, the comparative experiment was performed using the copper sheet as the substrate. The results show that the intensity of diffuse reflection can be enhanced, and the background variation was reduced by taking the mirror layer as the substrate. A linear variation was obtained between the concentrations and the intensities of the spectral response at a wavenumber. Using multivariate calibration for quantitative analysis, the optimal PLS model was obtained. The maximum deviation of the prediction results can be as low as 12.8µg. Therefore, this study made a progress for NIRDRS technique in microanalysis.

  20. Monitoring the in-situ oxide growth on uranium by ultraviolet-visible reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Schweke, Danielle; Maimon, Chen; Chernia, Zelig; Livneh, Tsachi

    2012-11-01

    We demonstrate the in-situ monitoring of oxide growth on U-0.1 wt. % Cr by means of UV-visible reflectance spectroscopy in the thickness range of ˜20-150 nm. Two different approaches are presented: In the "modeling approach," we employ a model for a metallic substrate covered by a dielectric layer, while taking into account the buildup of oxygen gradient and surface roughness. Then, we fit the simulated spectra to the experimental one. In the "extrema analysis," we derive an approximated analytical expression, which relates the oxide thickness to the position of the extrema in the reflectance spectra based on the condition for optical interference of the reflected light. Good agreement is found between the values extracted by the two procedures. Activation energy of ˜21 kcal/mole was obtained by monitoring the oxide growth in the temperature range of 22-90 °C. The upper bound for the thickness determination is argued to be mostly dictated by cracking and detachment processes in the formed oxide.

  1. Identification of cattle, llama and horse meat by near infrared reflectance or transflectance spectroscopy.

    PubMed

    Mamani-Linares, L W; Gallo, C; Alomar, D

    2012-02-01

    Visible and near infrared reflectance spectroscopy (VIS-NIRS) was used to discriminate meat and meat juices from three livestock species. In a first trial, samples of Longissimus lumborum muscle, corresponding to beef (31) llamas (21) and horses (27), were homogenised and their spectra collected in reflectance (NIRSystems 6500 scanning monochromator, in the range of 400-2500 nm). In the second trial, samples of meat juice (same muscle) from the same species (20 beef, 19 llama and 19 horse) were scanned in folded transmission (transflectance). Discriminating models (PLS regression) were developed against "dummy" variables, testing different mathematical treatments of the spectra. Best models indentified the species of almost all samples by their meat (reflectance) or meat juice (transflectance) spectra. A few (three of beef and one of llama, for meat samples; one of beef and one of horse, for juice samples) were classified as uncertain. It is concluded that NIRS is an effective tool to recognise meat and meat juice from beef, llama and horses.

  2. Fusiform gyrus face-selectivity reflects facial recognition ability

    PubMed Central

    Furl, N.; Garrido, L.; Dolan, R.; Driver, J.; Duchaine, B.

    2012-01-01

    Regions of the occipital and temporal lobes, including a region in the fusiform gyrus (FG), have been proposed to comprise a “core” visual representation system for faces, in part because they show face selectivity and face repetition suppression. But recent fMRI studies of developmental prosopagnosics (DPs) raise questions about whether these measures relate to face processing skills. Although DPs manifest deficient face processing, most studies to date have not shown unequivocal reductions of functional responses in the proposed core regions. We scanned 15 DPs and 15 non-DP control participants with fMRI while employing factor analysis to derive behavioral components related to face identification or other processes. Repetition suppression specific to facial identities in FG or to expression in FG and STS did not show compelling relationships with face identification ability. However, we identified robust relationships between face selectivity and face identification ability in FG across our sample for several convergent measures, including voxel-wise statistical parametric mapping, peak face selectivity in individually defined “fusiform face areas” (FFAs), and anatomical extents (cluster sizes) of those FFAs. None of these measures showed associations with behavioral expression or object recognition ability. As a group, DPs had reduced face-selective responses in bilateral FFA when compared with non-DPs. Individual DPs were also more likely than non-DPs to lack expected face-selective activity in core regions. These findings associate individual differences in face processing ability with selectivity in core face processing regions. This confirms that face selectivity can provide a valid marker for neural mechanisms that contribute to face identification ability. PMID:20617881

  3. Reflectance spectroscopy for diagnosis of epithelial precancer: model-based analysis of fiber-optic probe designs to resolve spectral information from epithelium and stroma

    PubMed Central

    Arifler, Dizem; Schwarz, Richard A.; Chang, Sung K.; Richards-Kortum, Rebecca

    2009-01-01

    Reflectance spectroscopy is a promising technology for detection of epithelial precancer. Fiber-optic probes that selectively collect scattered light from both the epithelium and the underlying stroma are likely to improve diagnostic performance of in vivo reflectance spectroscopy by revealing diagnostic features unique to each layer. We present Monte Carlo models with which to evaluate fiber-optic probe geometries with respect to sampling depth and depth resolution. We propose a probe design that utilizes half-ball lens coupled source and detector fibers to isolate epithelial scattering from stromal scattering and hence to resolve spectral information from the two layers. The probe is extremely compact and can provide easy access to different organ sites. PMID:16045217

  4. Reflectance spectroscopy for the assessment of soil salt content in soils of the yellow river delta of China

    USGS Publications Warehouse

    Weng, Yongling; Gong, P.; Zhu, Z.

    2008-01-01

    There has been growing interest in the use of reflectance spectroscopy as a rapid and inexpensive tool for soil characterization. In this study, we collected 95 soil samples from the Yellow River Delta of China to investigate the level of soil salinity in relation to soil spectra. Sample plots were selected based on a field investigation and the corresponding soil salinity classification map to maximize variations of saline characteristics in the soil. Spectral reflectances of air-dried soil samples were measured using an Analytical Spectral Device (ASD) spectrometer (350-2500 nm) with an artificial light source. In the Yellow River Delta, the dominant chemical in the saline soil was NaCl and MgCl2. Soil spectra were analysed using two-thirds of the available samples, with the remaining one-third withheld for validation purposes. The analysis indicated that with some preprocessing, the reflectance at 1931-2123 nm and 2153-2254 nm was highly correlated with soil salt content (SSC). In the spectral region of 1931-2123 nm, the correlation R ranged from -0.80 to -0.87. In the region of 2153-2254 nm, the SSC was positively correlated with preprocessed reflectance (0.79-0.88). The preprocessing was done by fitting a convex hull to the reflectance curve and dividing the spectral reflectance by the value of the corresponding convex hull band by band. This process is called continuum removal, and the resulting ratio is called continuum removed reflectance (CR reflectance). However, the SSC did not have a high correlation with the unprocessed reflectance, and the correlation was always negative in the entire spectrum (350-2500 nm) with the strongest negative correlation at 1981 nm (R = -0.63). Moreover, we found a strong correlation (R=0.91) between a soil salinity index (SSI: Constructed using CR reflectance at 2052 nm and 2203 nm) and SSC. We estimated SSC as a function of SSI and SSI' (SSI': Constructed using unprocessed reflectance at 2052 nm and 2203 nm) using

  5. Micro transflection on a metallic stick: an innovative approach of reflection infrared spectroscopy for minimally invasive investigation of painting varnishes.

    PubMed

    Rosi, Francesca; Legan, Lea; Miliani, Costanza; Ropret, Polonca

    2017-03-06

    A new analytical approach, based on micro-transflection measurements from a diamond-coated metal sampling stick, is presented for the analysis of painting varnishes. Minimally invasive sampling is performed from the varnished surface using the stick, which is directly used as a transflection substrate for micro Fourier transform infrared (FTIR) measurements. With use of a series of varnished model paints, the micro-transflection method has been proved to be a valuable tool for the identification of surface components thanks to the selectivity of the sampling, the enhancement of the absorbance signal, and the easier spectral interpretation because the profiles are similar to transmission mode ones. Driven by these positive outcomes, the method was then tested as tool supporting noninvasive reflection FTIR spectroscopy during the assessment of varnish removal by solvent cleaning on paint models. Finally, the integrated analytical approach based on the two reflection methods was successfully applied for the monitoring of the cleaning of the sixteenth century painting Presentation in the Temple by Vittore Carpaccio. Graphical Abstract Micro-transflection FTIR on a metallic stick for the identification of varnishes during painting cleanings.

  6. Diagnostic power of diffuse reflectance spectroscopy for targeted detection of breast lesions with microcalcifications.

    PubMed

    Soares, Jaqueline S; Barman, Ishan; Dingari, Narahara Chari; Volynskaya, Zoya; Liu, Wendy; Klein, Nina; Plecha, Donna; Dasari, Ramachandra R; Fitzmaurice, Maryann

    2013-01-08

    Microcalcifications geographically target the location of abnormalities within the breast and are of critical importance in breast cancer diagnosis. However, despite stereotactic guidance, core needle biopsy fails to retrieve microcalcifications in up to 15% of patients. Here, we introduce an approach based on diffuse reflectance spectroscopy for detection of microcalcifications that focuses on variations in optical absorption stemming from the calcified clusters and the associated cross-linking molecules. In this study, diffuse reflectance spectra are acquired ex vivo from 203 sites in fresh biopsy tissue cores from 23 patients undergoing stereotactic breast needle biopsies. By correlating the spectra with the corresponding radiographic and histologic assessment, we have developed a support vector machine-derived decision algorithm, which shows high diagnostic power (positive predictive value and negative predictive value of 97% and 88%, respectively) for diagnosis of lesions with microcalcifications. We further show that these results are robust and not due to any spurious correlations. We attribute our findings to the presence of proteins (such as elastin), and desmosine and isodesmosine cross-linkers in the microcalcifications. It is important to note that the performance of the diffuse reflectance decision algorithm is comparable to one derived from the corresponding Raman spectra, and the considerably higher intensity of the reflectance signal enables the detection of the targeted lesions in a fraction of the spectral acquisition time. Our findings create a unique landscape for spectroscopic validation of breast core needle biopsy for detection of microcalcifications that can substantially improve the likelihood of an adequate, diagnostic biopsy in the first attempt.

  7. Diagnostic power of diffuse reflectance spectroscopy for targeted detection of breast lesions with microcalcifications

    PubMed Central

    Soares, Jaqueline S.; Barman, Ishan; Dingari, Narahara Chari; Volynskaya, Zoya; Liu, Wendy; Klein, Nina; Plecha, Donna; Dasari, Ramachandra R.; Fitzmaurice, Maryann

    2013-01-01

    Microcalcifications geographically target the location of abnormalities within the breast and are of critical importance in breast cancer diagnosis. However, despite stereotactic guidance, core needle biopsy fails to retrieve microcalcifications in up to 15% of patients. Here, we introduce an approach based on diffuse reflectance spectroscopy for detection of microcalcifications that focuses on variations in optical absorption stemming from the calcified clusters and the associated cross-linking molecules. In this study, diffuse reflectance spectra are acquired ex vivo from 203 sites in fresh biopsy tissue cores from 23 patients undergoing stereotactic breast needle biopsies. By correlating the spectra with the corresponding radiographic and histologic assessment, we have developed a support vector machine-derived decision algorithm, which shows high diagnostic power (positive predictive value and negative predictive value of 97% and 88%, respectively) for diagnosis of lesions with microcalcifications. We further show that these results are robust and not due to any spurious correlations. We attribute our findings to the presence of proteins (such as elastin), and desmosine and isodesmosine cross-linkers in the microcalcifications. It is important to note that the performance of the diffuse reflectance decision algorithm is comparable to one derived from the corresponding Raman spectra, and the considerably higher intensity of the reflectance signal enables the detection of the targeted lesions in a fraction of the spectral acquisition time. Our findings create a unique landscape for spectroscopic validation of breast core needle biopsy for detection of microcalcifications that can substantially improve the likelihood of an adequate, diagnostic biopsy in the first attempt. PMID:23267090

  8. Reflectance spectroscopy of ferric sulfate-bearing montmorillonites as Mars soil analog materials.

    PubMed

    Bishop, J L; Pieters, C M; Burns, R G; Edwards, J O; Mancinelli, R L; Fröschl, H

    1995-09-01

    Spectroscopic analyses have shown that smectites enhanced in the laboratory with additional ferric species exhibit important similarities to those of the soils on Mars. Ferrihydrite in these chemically treated smectites has features in the visible to near-infrared region that resemble the energies and band strengths of features in reflectance spectra observed for several bright regions on Mars. New samples have been prepared with sulfate as well, because S was found by Viking to be a major component in the surface material on Mars. A suite of ferrihydrite-bearing and ferric sulfate-bearing montmorillonites, prepared with variable Fe3+ and S concentrations and variable pH conditions, has been analyzed using reflectance spectroscopy in the visible and infrared regions, Mössbauer spectroscopy at room temperature and 4 K, differential thermal analysis, and X-ray diffraction. These analyses support the formation of ferrihydrite of variable crystallinity in the ferrihydrite-bearing montmorillonites and a combination of schwertmannite and ferrihydrite in the ferric sulfate-bearing montmorillonites. Small quantities of poorly crystalline or nanophase forms of other ferric materials may also be present in these samples. The chemical formation conditions of the ferrihydrite-bearing and ferric sulfate-bearing montmorillonites influence the character of the low temperature Mössbauer sextets and the visible reflectance spectra. An absorption minimum is observed at 0.88-0.89 micrometers in spectra of the ferric sulfate-bearing samples, and at 0.89-0.92 micrometers in spectra of the ferrihydrate-bearing montmorillonites. Mössbauer spectra of the ferric sulfate-bearing montmorillonites indicate variable concentrations of ferrihydrite and schwertmannite in the interlaminar spaces and along grain surfaces. Dehydration under reduced atmospheric pressure conditions induces a greater effect on the adsorbed and interlayer water in ferrihydrite-bearing montmorillonite than on the

  9. Reflectance spectroscopy of ferric sulfate-bearing montmorillonites as Mars soil analog materials

    NASA Technical Reports Server (NTRS)

    Bishop, J. L.; Pieters, C. M.; Burns, R. G.; Edwards, J. O.; Mancinelli, R. L.; Froschl, H.

    1995-01-01

    Spectroscopic analyses have shown that smectites enhanced in the laboratory with additional ferric species exhibit important similarities to those of the soils on Mars. Ferrihydrite in these chemically treated smectites has features in the visible to near-infrared region that resemble the energies and band strengths of features in reflectance spectra observed for several bright regions on Mars. New samples have been prepared with sulfate as well, because S was found by Viking to be a major component in the surface material on Mars. A suite of ferrihydrite-bearing and ferric sulfate-bearing montmorillonites, prepared with variable Fe3+ and S concentrations and variable pH conditions, has been analyzed using reflectance spectroscopy in the visible and infrared regions, Mossbauer spectroscopy at room temperature and 4 K, differential thermal analysis, and X-ray diffraction. These analyses support the formation of ferrihydrite of variable crystallinity in the ferrihydrite-bearing montmorillonites and a combination of schwertmannite and ferrihydrite in the ferric sulfate-bearing montmorillonites. Small quantities of poorly crystalline or nanophase forms of other ferric materials may also be present in these samples. The chemical formation conditions of the ferrihydrite-bearing and ferric sulfate-bearing montmorillonites influence the character of the low temperature Mossbauer sextets and the visible reflectance spectra. An absorption minimum is observed at 0.88-0.89 micrometers in spectra of the ferric sulfate-bearing samples, and at 0.89-0.92 micrometers in spectra of the ferrihydrate-bearing montmorillonites. Mossbauer spectra of the ferric sulfate-bearing montmorillonites indicate variable concentrations of ferrihydrite and schwertmannite in the interlaminar spaces and along grain surfaces. Dehydration under reduced atmospheric pressure conditions induces a greater effect on the adsorbed and interlayer water in ferrihydrite-bearing montmorillonite than on the water

  10. Reflectance spectroscopy of ferric sulfate-bearing montmorillonites as Mars soil analog materials

    NASA Technical Reports Server (NTRS)

    Bishop, J. L.; Pieters, C. M.; Burns, R. G.; Edwards, J. O.; Mancinelli, R. L.; Froschl, H.

    1995-01-01

    Spectroscopic analyses have shown that smectites enhanced in the laboratory with additional ferric species exhibit important similarities to those of the soils on Mars. Ferrihydrite in these chemically treated smectites has features in the visible to near-infrared region that resemble the energies and band strengths of features in reflectance spectra observed for several bright regions on Mars. New samples have been prepared with sulfate as well, because S was found by Viking to be a major component in the surface material on Mars. A suite of ferrihydrite-bearing and ferric sulfate-bearing montmorillonites, prepared with variable Fe3+ and S concentrations and variable pH conditions, has been analyzed using reflectance spectroscopy in the visible and infrared regions, Mossbauer spectroscopy at room temperature and 4 K, differential thermal analysis, and X-ray diffraction. These analyses support the formation of ferrihydrite of variable crystallinity in the ferrihydrite-bearing montmorillonites and a combination of schwertmannite and ferrihydrite in the ferric sulfate-bearing montmorillonites. Small quantities of poorly crystalline or nanophase forms of other ferric materials may also be present in these samples. The chemical formation conditions of the ferrihydrite-bearing and ferric sulfate-bearing montmorillonites influence the character of the low temperature Mossbauer sextets and the visible reflectance spectra. An absorption minimum is observed at 0.88-0.89 micrometers in spectra of the ferric sulfate-bearing samples, and at 0.89-0.92 micrometers in spectra of the ferrihydrate-bearing montmorillonites. Mossbauer spectra of the ferric sulfate-bearing montmorillonites indicate variable concentrations of ferrihydrite and schwertmannite in the interlaminar spaces and along grain surfaces. Dehydration under reduced atmospheric pressure conditions induces a greater effect on the adsorbed and interlayer water in ferrihydrite-bearing montmorillonite than on the water

  11. Point-Contact Andreev Reflection Spectroscopy of Iron-Based Superconductors

    NASA Astrophysics Data System (ADS)

    Yen, Yi-Tang; Wei, J. Y. T.; Saha, S. R.; Drye, T.; Kirshenbaum, K.; Paglione, J.; Hu*, Rongwei; Petrovic, C.; Yeh, K. W.; Wu, M. K.

    2011-03-01

    We carry out point-contact Andreev reflection spectroscopic studies at cryogenic temperatures on single crystals of Fe-chalcogenide and Fe-pnictide superconductors, including Fe S1 - x Te x , FeSe 1-x Te x , SrFe 1.84 Pt 0.16 As 2 and BaFe 1.9 Pt 0.1 As 2 . Our data are analyzed using current theoretical models involving multiband superconductivity. Further interpretations will be made in comparison with scanning tunneling spectroscopy measurements on Fe-chalcogenides and NbSe 2 . *Present address: Ames Laboratory, Iowa State University Work supported by NSERC, CFI/OIT, Taiwan National Science Council, AFOSR-MURI Grant FA9550-09-1-0603, U.S. D.O.E. and Brookhaven Science Associates (No.DE-Ac02-98CH10886), and Center for Emergent Superconductivity.

  12. Inexpensive diffuse reflectance spectroscopy system for measuring changes in tissue optical properties

    NASA Astrophysics Data System (ADS)

    Glennie, Diana L.; Hayward, Joseph E.; McKee, Daniel E.; Farrell, Thomas J.

    2014-10-01

    The measurement of changes in blood volume in tissue is important for monitoring the effects of a wide range of therapeutic interventions, from radiation therapy to skin-flap transplants. Many systems available for purchase are either expensive or difficult to use, limiting their utility in the clinical setting. A low-cost system, capable of measuring changes in tissue blood volume via diffuse reflectance spectroscopy is presented. The system consists of an integrating sphere coupled via optical fibers to a broadband light source and a spectrometer. Validation data are presented to illustrate the accuracy and reproducibility of the system. The validity and utility of this in vivo system were demonstrated in a skin blanching/reddening experiment using epinephrine and lidocaine, and in a study measuring the severity of radiation-induced erythema during radiation therapy.

  13. Experimental investigation of a flowing superspreader solution using Reflection Anisotropy Spectroscopy

    NASA Astrophysics Data System (ADS)

    Williams, K.; Bertola, V.; Martin, D. S.

    Superspreading is the phenomenon where a drop of trisiloxane surfactant solution rapidly spreads on a moderately hydrophobic substrate over a very large area. However the mechanism of superspreading is unknown to date. In this work Reflection Anisotropy Spectroscopy (RAS) is used for the first time in order to investigate the causes of superspreading. An aqueous solution of the superspreader Evonik S240 (0.1%) is compared with the chemically similar but non superspreading solution of Evonik S233 (0.1%), on a polycarbonate (pcp) substrate. This study is aimed at finding evidence of organised structures, such as micelles, at the contact line of the receding film which could be part of the mechanism of superspreading. The RA signal is monitored as the solutions recede from vertically aligned pcp substrates. The results are then analysed for evidence of anisotropy on the surface arising from any micelle structures located at the contact line of the film.

  14. Determination of moisture in Cheddar cheese by near infrared reflectance spectroscopy.

    PubMed

    Wehling, R L; Pierce, M M

    1988-01-01

    Near infrared reflectance (NIR) spectroscopy was used to determine the moisture content of Cheddar cheese. Through multiple linear regression analysis, a 3-wavelength calibration was developed for use with a commercial filter monochromator instrument. For a validation set of 47 samples, the correlation coefficient squared (r2) between the NIR and oven moisture methods was 0.92, with a standard error of performance (SEP) of 0.38%. Sample temperature was found to significantly affect the spectral response; therefore, it was necessary to equilibrate all samples to a uniform temperature prior to NIR analysis. Aging may also affect the NIR characteristics of cheese, although it was possible to develop a successful calibration that encompassed a wide range of aging times.

  15. Rapid analysis of tetracycline hydrochloride solution by attenuated total reflection terahertz time-domain spectroscopy.

    PubMed

    Qin, Jianyuan; Xie, Lijuan; Ying, Yibin

    2017-06-01

    Despite numerous methods for the detection of antibiotic residues, they are usually destructive and require tedious pre-treatment. Terahertz time-domain spectroscopy (THz-TDS) is an emerging technology that has advantages for analyzing chemical and biological compounds since THz waves are very sensitive to the molecular vibrational modes. Here we incorporated attenuated total reflection technique into the THz-TDS and demonstrated that this technology (ATR THz-TDS) allowed to determine the complex refractive indices of tetracycline hydrochloride (TCH) solutions with high accuracy and could be used to predict their concentrations. Our results from the simple linear regression models indicated that the complex refractive index exhibited a monotonic decrease with an increase in the TCH concentration. This study will provide new knowledge about the concentration determination of a liquid sample that couldn't be elucidated with the conventional THz-TDS technologies.

  16. Reflection-absorption infrared spectroscopy of thin films using an external cavity quantum cascade laser

    NASA Astrophysics Data System (ADS)

    Phillips, Mark C.; Craig, Ian M.; Blake, Thomas A.

    2013-01-01

    We present experimental demonstrations using a broadly tunable external cavity quantum cascade laser (ECQCL) to perform Reflection-Absorption InfraRed Spectroscopy (RAIRS) of thin layers and residues on surfaces. The ECQCL compliance voltage was used to measure fluctuations in the ECQCL output power and improve the performance of the RAIRS measurements. Absorption spectra from self-assembled monolayers of a fluorinated alkane thiol and a thiol carboxylic acid were measured and compared with FTIR measurements. RAIRS spectra of the explosive compounds PETN, RDX, and tetryl deposited on gold substrates were also measured. Rapid measurement times and low noise were demonstrated, with <1E-3 absorbance noise for a 10 second measurement time.

  17. Evaluation of apparent viscosity of Para rubber latex by diffuse reflection near-infrared spectroscopy.

    PubMed

    Sirisomboon, Panmanas; Chowbankrang, Rawiphan; Williams, Phil

    2012-05-01

    Near-infrared spectroscopy in diffuse reflection mode was used to evaluate the apparent viscosity of Para rubber field latex and concentrated latex over the wavelength range of 1100 to 2500 nm, using partial least square regression (PLSR). The model with ten principal components (PCs) developed using the raw spectra accurately predicted the apparent viscosity with correlation coefficient (r), standard error of prediction (SEP), and bias of 0.974, 8.6 cP, and -0.4 cP, respectively. The ratio of the SEP to the standard deviation (RPD) and the ratio of the SEP to the range (RER) for the prediction were 4.4 and 16.7, respectively. Therefore, the model can be used for measurement of the apparent viscosity of field latex and concentrated latex in quality assurance and process control in the factory.

  18. Fast determination of total ginsenosides content in ginseng powder by near infrared reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Chen, Hua-cai; Chen, Xing-dan; Lu, Yong-jun; Cao, Zhi-qiang

    2006-01-01

    Near infrared (NIR) reflectance spectroscopy was used to develop a fast determination method for total ginsenosides in Ginseng (Panax Ginseng) powder. The spectra were analyzed with multiplicative signal correction (MSC) correlation method. The best correlative spectra region with the total ginsenosides content was 1660 nm~1880 nm and 2230nm~2380 nm. The NIR calibration models of ginsenosides were built with multiple linear regression (MLR), principle component regression (PCR) and partial least squares (PLS) regression respectively. The results showed that the calibration model built with PLS combined with MSC and the optimal spectrum region was the best one. The correlation coefficient and the root mean square error of correction validation (RMSEC) of the best calibration model were 0.98 and 0.15% respectively. The optimal spectrum region for calibration was 1204nm~2014nm. The result suggested that using NIR to rapidly determinate the total ginsenosides content in ginseng powder were feasible.

  19. Diffuse Reflectance Spectroscopy and Colorimetry as a Diagnostic Tool for Acanthosis Nigricans

    NASA Astrophysics Data System (ADS)

    Pattamadilok, Bensachee; Devpura, Suneetha; Syed, Zain U.; Vemulapalli, Pranita; Henderson, Marsha; Rehse, Steven J.; Hamzavi, Iltefat; Mahmoud, Bassel H.; Lim, Henry W.; Naik, Ratna

    2011-03-01

    The purpose of this study was to quantify skin color changes due to Acanthosis Nigricans, a disorder common among prediabetic and obese individuals. The non-invasive optical technique diffuse reflectance spectroscopy (DRS) was used to determine skin melanin, oxyhemoglobin and deoxyhemoglobin content through the measured absorption spectrum. Colorimetery was used to measure skin color based on the standard Tristimulus values (L*, a*, and b*). Data was obtained from eight patients, spanning eight months of treatment. Measurements were obtained from lesion tissue on the neck and healthy skin was used as a control. L*, a* and b* values showed significant differences between lesion and normal controls, whereas melanin was the only parameter which showed statistical significant differences in DRS measurements. Future work will use more sensitive chemometric methods to increase diagnostic accuracy based on the raw spectra of the DRS.

  20. Diffuse reflectance near infrared spectroscopy can distinguish normal from enzymatically digested cartilage

    NASA Astrophysics Data System (ADS)

    Brown, C. P.; Bowden, J. C.; Rintoul, L.; Meder, R.; Oloyede, A.; Crawford, R. W.

    2009-09-01

    A non-destructive, diffuse reflectance near infrared spectroscopy (DR-NIRS) approach is considered as a potential tool for determining the component-level structural properties of articular cartilage. To this end, DR-NIRS was applied in vitro to detect structural changes, using principal component analysis as the statistical basis for characterization. The results show that this technique, particularly with first-derivative pretreatment, can distinguish normal, intact cartilage from enzymatically digested cartilage. Further, this paper establishes that the use of DR-NIRS enables the probing of the full depth of the uncalcified cartilage matrix, potentially allowing the assessment of degenerative changes in joint tissue, independent of the site of initiation of the osteoarthritic process.

  1. Preconcentration of flavonoids on polyurethane foam and their direct determination by diffuse reflectance spectroscopy.

    PubMed

    Dmitrienko, Stanislava G; Apyari, Vladimir V; Kudrinskaya, Vera A; Stepanova, Alexandra V

    2012-12-15

    Sorption preconcentration of flavonoids quercetin, rutin, chrysin, morin, naringenin and naringin on polyurethane foam was investigated. Several parameters that could affect the preconcentration efficiency were evaluated. The preconcentration efficiency is more than 75% for all the flavonoids except for those that are carbohydrate substituted (preconcentration efficiency less than 11%). This can be used for the separation of these two types of flavonoids. An ability of some flavonoids to absorb light in PUF phase allows their direct determination by diffuse reflectance spectroscopy. Validation of calibration linearity, reproducibility, limits of detection and quantification was performed. The method developed allows to determine flavonoids with detection limits 0.01-0.2 μg mL(-1). The method was utilized for the determination of quercetin in some plant extracts.

  2. Inexpensive diffuse reflectance spectroscopy system for measuring changes in tissue optical properties.

    PubMed

    Glennie, Diana L; Hayward, Joseph E; McKee, Daniel E; Farrell, Thomas J

    2014-01-01

    The measurement of changes in blood volume in tissue is important for monitoring the effects of a wide range of therapeutic interventions, from radiation therapy to skin-flap transplants. Many systems available for purchase are either expensive or difficult to use, limiting their utility in the clinical setting. A low-cost system, capable of measuring changes in tissue blood volume via diffuse reflectance spectroscopy is presented. The system consists of an integrating sphere coupled via optical fibers to a broadband light source and a spectrometer. Validation data are presented to illustrate the accuracy and reproducibility of the system. The validity and utility of this in vivo system were demonstrated in a skin blanching/reddening experiment using epinephrine and lidocaine, and in a study measuring the severity of radiation-induced erythema during radiation therapy.

  3. Prediction of Japanese green tea ranking by fourier transform near-infrared reflectance spectroscopy.

    PubMed

    Ikeda, Tatsuhiko; Kanaya, Shigehiko; Yonetani, Tsutomu; Kobayashi, Akio; Fukusaki, Eiichiro

    2007-11-28

    A rapid and easy determination method of green tea's quality was developed by using Fourier transform near-infrared (FT-NIR) reflectance spectroscopy and metabolomics techniques. The method is applied to an online measurement and an online prediction of green tea's quality. FT-NIR was employed to measure green tea metabolites' alteration affected by green tea varieties and manufacturing processes. A set of ranked green tea samples from a Japanese commercial tea contest was analyzed to create a reliable quality-prediction model. As multivariate analyses, principal component analysis (PCA) and partial least-squares projections to latent structures (PLS) were used. It was indicated that the wavenumber region from 5500 to 5200 cm(-1) had high correlation with the quality of the tea. In this study, a reliable quality-prediction model of green tea has been achieved.

  4. Detection of whitening agents in illegal cosmetics using attenuated total reflectance-infrared spectroscopy.

    PubMed

    Deconinck, E; Bothy, J L; Desmedt, B; Courselle, P; De Beer, J O

    2014-09-01

    Cosmetic products containing illegal whitening agents are still found on the European market. They represent a considerable risk to public health, since they are often characterised by severe side effects when used chronically. The detection of such products at customs is not always simple, due to misleading packaging and the existence of products containing only legal components. Therefore there is a need for easy to use equipment and techniques to perform an initial screening of samples. The use of attenuated total reflectance-infrared (ATR-IR) spectroscopy, combined with chemometrics, was evaluated for that purpose. It was found that the combination of ATR-IR with the simple chemometric technique k-nearest neighbours gave good results. A model was obtained in which a minimum of illegal samples was categorised as legal. The correctly classified illegal samples could be attributed to the illegal components present.

  5. The use of UV-VIS-NIR reflectance spectroscopy to identify iron minerals

    NASA Astrophysics Data System (ADS)

    Szalai , Z.; Kiss, K.; Jakab, G.; Sipos, P.; Belucz, B.; Németh, T.

    2013-11-01

    Iron minerals - which behave as indicators in earthly and Martian environments - can be identified by UV-VIS-NIR reflectance spectroscopy. The aim of this study was to compare the spectra of various soils and sediments all of which contain iron minerals but developed under different environmental conditions. To identify the mineral of the sediments we used the first and second derivatives of the Kubelka-Munk transformed spectra. According to their iron mineral composition, the analysed samples can be divided into three distinct groups. Goethite refers to the hydromorphic conditions, hematite suffers from the long and intense weathering in leaching environment. In the case of steppe climatic conditions the weathering is so weak that the appearance of pedogenic iron minerals is improbable in these soils.

  6. Determination of in vivo skin moisture level by near-infrared reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Saknite, Inga; Spigulis, Janis

    2015-03-01

    Near-infrared spectroscopy has a potential for noninvasive determination of skin moisture level due to high water absorption. In this study, diffuse reflectance spectra of in vivo skin were acquired in the spectral range of 900 nm to 1700 nm by using near-infrared spectrometer, optical fiber and halogen bulb light source. Absorption changes after applying skin moisturizers were analyzed over time at different body sites. Results show difference in absorption when comparing dry and normal skin. Comparison of absorption changes over time after applying moisturizer at different body sites is analyzed and discussed. Some patterns of how skin reacts to different skin moisturizers are shown, although no clear pattern can be seen due to signal noise.

  7. Determination of molecular order in supported lipid membranes by internal reflection Fourier transform infrared spectroscopy.

    PubMed Central

    Citra, M J; Axelsen, P H

    1996-01-01

    When polarized internal reflection infrared spectroscopy is used to determine molecular order in supported lipid membranes, the results are critically dependent on the accuracy of assumptions made about the evanescent electric field amplitudes in the membrane. In this work, we examine several expressions used for calculating evanescent electric field amplitudes in supported lipid monolayers and bilayers, and test their validity by measuring the infrared dichroism of poly-gamma-benzyl-L-glutamate and poly-beta-benzyl-L-aspartate under conditions in which their molecular order is known. Our results indicate that treating such systems as a simple single interface between two semi-infinite bulk phases is more accurate than the commonly employed thin-film approximation. This implies that earlier conclusions about molecular order in supported lipid membranes may require substantial revision. PMID:8889156

  8. Determination of soil content in chlordecone (organochlorine pesticide) using near infrared reflectance spectroscopy (NIRS).

    PubMed

    Brunet, Didier; Woignier, Thierry; Lesueur-Jannoyer, Magalie; Achard, Raphaël; Rangon, Luc; Barthès, Bernard G

    2009-11-01

    Chlordecone is a toxic organochlorine insecticide that was used in banana plantations until 1993 in the French West Indies. This study aimed at assessing the potential of near infrared reflectance spectroscopy (NIRS) for determining chlordecone content in Andosols, Nitisols and Ferralsols from Martinique. Using partial least square regression, chlordecone content conventionally determined through gas chromatography-mass spectrometry could be correctly predicted by NIRS (Q(2) = 0.75, R(2) = 0.82 for the total set), especially for samples with chlordecone content <12 mg kg(-1) or when the sample set was rather homogeneous (Q(2) = 0.91, R(2) = 0.82 for the Andosols). Conventional measures and NIRS predictions were poorly correlated for chlordecone content >12 mg kg(-1), nevertheless ca. 80% samples were correctly predicted when the set was divided into three or four classes of chlordecone content. Thus NIRS could be considered a time- and cost-effective method for characterising soil contamination by chlordecone.

  9. Confidence intervals on fit parameters derived from optical reflectance spectroscopy measurements.

    PubMed

    Amelink, Arjen; Robinson, Dominic J; Sterenborg, Henricus J C M

    2008-01-01

    We validate a simple method for determining the confidence intervals on fitted parameters derived from modeling optical reflectance spectroscopy measurements using synthetic datasets. The method estimates the parameter confidence intervals as the square roots of the diagonal elements of the covariance matrix, obtained by multiplying the inverse of the second derivative matrix of chi2 with respect to its free parameters by chi2/v, with v the number of degrees of freedom. We show that this method yields correct confidence intervals as long as the model used to describe the data is correct. Imperfections in the fitting model introduces a bias in the fitted parameters that greatly exceeds the estimated confidence intervals. We investigate the use of various methods to identify and subsequently minimize the bias in the fitted parameters associated with incorrect modeling.

  10. Attenuated total reflectance Fourier transform infrared spectroscopy analysis of red seal inks on questioned document.

    PubMed

    Nam, Yun Sik; Park, Jin Sook; Kim, Nak-Kyoon; Lee, Yeonhee; Lee, Kang-Bong

    2014-07-01

    Seals are traditionally used in the Far East Asia to stamp an impression on a document in place of a signature. In this study, an accuser claimed that a personal contract regarding mining development rights acquired by a defendant was devolved to the accuser because the defendant stamped the devolvement contract in the presence of the accuser and a witness. The accuser further stated that the seal ink stamped on the devolvement contract was the same as that stamped on the development rights application document. To verify this, the seals used in two documents were analyzed using micro-attenuated total reflectance Fourier transform infrared spectroscopy and infrared spectra. The findings revealed that the seals originated from different manufacturers. Thus, the accuser's claim on the existence of a devolvement contract was proved to be false.

  11. Minimally invasive screening for colitis using attenuated total internal reflectance fourier transform infrared spectroscopy.

    PubMed

    Titus, Jitto; Viennois, Emilie; Merlin, Didier; Unil Perera, A G

    2017-03-01

    This article describes a rapid, simple and cost-effective technique that could lead to a screening method for colitis without the need for biopsies or in vivo measurements. This screening technique includes the testing of serum using Attenuated Total Reflectance Fourier Transform Infrared (ATR-FTIR) spectroscopy for the colitis-induced increased presence of mannose. Chronic (Interleukin 10 knockout) and acute (Dextran Sodium Sulphate-induced) models for colitis are tested using the ATR-FTIR technique. Arthritis (Collagen Antibody Induced Arthritis) and metabolic syndrome (Toll like receptor 5 knockout) models are also tested as controls. The marker identified as mannose uniquely screens and distinguishes the colitic from the non-colitic samples and the controls. The reference or the baseline spectrum could be the pooled and averaged spectra of non-colitic samples or the subject's previous sample spectrum. This shows the potential of having individualized route maps of disease status, leading to personalized diagnosis and drug management.

  12. Quantitative Analysis of Alcohol, Sugar, and Tartaric Acid in Alcoholic Beverages Using Attenuated Total Reflectance Spectroscopy

    PubMed Central

    Nagarajan, R.; Gupta, A.; Bajaj, M. M.

    2006-01-01

    Mid-infrared (MIR) spectroscopy in attenuated total reflectance (ATR) mode was used for quantifying ethanol, sucrose, and tartaric acid in alcoholic beverages. One hundred synthetic samples were prepared with different ethanol, sucrose, and tartaric acid concentrations. Experiments were carried out on Bio-Rad 175 C FTS using an ATR accessory. Spectra were recorded in the wavelength region 600–4000 cm −1 . Calibration was performed using partial least squares (PLS) algorithm. Commercially available alcoholic beverages (gin, rum, vodka, etc.) were experimented and concentration of ethanol in these samples was predicted using the developed calibration model. Chemical analysis of these commercial samples was carried out in order to compare the results. The agreement between ATR results with those of chemical analysis revealed good reliability and repeatability of the technique used. PMID:17671618

  13. Applications of diffuse reflectance Fourier transform infrared spectroscopy to fiber-reinforced composites

    SciTech Connect

    Cole, K.C.; Noel, D.; Hechler, J.J.

    1988-12-01

    Diffuse reflectance Fourier transform infrared (FTIR) spectroscopy can be used to obtain infrared spectra directly from the surface of composite materials, with little or no sample preparation. It is thus of interest as a nondestructive method for industrial inspection. In many cases, the IR spectra provide detailed information concerning the chemical composition and molecular structure of the material. The technique works particularly well for carbon-fiber composites. This paper describes the principles involved, some factors which influence the quality of the spectra, and a number of examples of applications. These include the characterization of epoxy matrices (composition, curing, degradation), the detection of surface contamination, and the determination of the degree of crystallinity in poly(phenylene sulfide)-based composites. 24 references.

  14. Infrared Reflection-Absorption Spectroscopy: Principles and Applications to Lipid-Protein Interaction in Langmuir Films

    PubMed Central

    Mendelsohn, Richard; Mao, Guangru; Flach, Carol R.

    2010-01-01

    Infrared reflection-absorption spectroscopy (IRRAS) of lipid/protein monolayer films in situ at the air/water interface provides unique molecular structure and orientation information from the film constituents. The technique is thus well suited for studies of lipid/protein interaction in a physiologically relevant environment. Initially, the nature of the IRRAS experiment is described and the molecular structure information that may be obtained is recapitulated. Subsequently, several types of applications, including the determination of lipid chain conformation and tilt as well as elucidation of protein secondary structure are reviewed. The current article attempts to provide the reader with an understanding of the current capabilities of IRRAS instrumentation and the type of results that have been achieved to date from IRRAS studies of lipids, proteins and lipid/protein films of progressively increasing complexity. Finally, possible extensions of the technology are briefly considered. PMID:20004639

  15. Reflection-Absorption Infrared Spectroscopy of Thin Films Using an External Cavity Quantum Cascade Laser

    SciTech Connect

    Phillips, Mark C.; Craig, Ian M.; Blake, Thomas A.

    2013-02-04

    We present experimental demonstrations using a broadly tunable external cavity quantum cascade laser (ECQCL) to perform Reflection-Absorption InfraRed Spectroscopy (RAIRS) of thin layers and residues on surfaces. The ECQCL compliance voltage was used to measure fluctuations in the ECQCL output power and improve the performance of the RAIRS measurements. Absorption spectra from self-assembled monolayers of a fluorinated alkane thiol and a thiol carboxylic acid were measured and compared with FTIR measurements. RAIRS spectra of the explosive compounds PETN, RDX, and tetryl deposited on gold substrates were also measured. Rapid measurement times and low noise were demonstrated, with < 1E-3 absorbance noise for a 10 second measurement time.

  16. Studying substrate binding to reconstituted secondary transporters by attenuated total reflection infrared difference spectroscopy.

    PubMed

    Lórenz-Fonfría, Víctor A; León, Xavier; Padrós, Esteve

    2012-01-01

    The determination of protein conformational changes induced by the interaction of substrates with secondary transporters is an important step toward the elucidation of their transport mechanism. Since conformational changes in a protein alter its vibrational patterns, they can be detected with high sensitivity by infrared difference (IR(diff)) spectroscopy without the need for external probes. We describe a general procedure to obtain substrate-induced IR(diff) spectra by alternating perfusion of buffers over an attenuated total reflection (ATR) crystal containing an adhered film of a membrane protein reconstituted in lipids. As an example, we provide specific protocols to obtain melibiose and Na(+)-induced ATR-IR(diff) spectra of reconstituted melibiose permease, a sodium/melibiose co-transporter from E. coli. The presented methodology is applicable in principle to any membrane protein, provided that it can be purified and reconstituted in functional form, and appropriate substrates are available.

  17. [Determination of degree of polymerization of natural cellulose pulp using near-infrared diffuse reflectance spectroscopy].

    PubMed

    Yi, Ying; Song, Chun-Feng; Yuan, Hong-Fu; Xie, Jin-Chun; Du, Jun-Qi; Li, Xiao-Yu

    2014-09-01

    A new method of near-infrared (NIR) diffuse reflectance spectroscopy is proposed to rapidly determine the degree of polymerization (DP) of natural cellulose (cotton and wood) pulp produced by a new clean pulping process. One hundred and ninety five samples were collected and their DP data were determined by standard method GB/T 9107-1999. The spectroscopy measurement method of the samples was studied and their near-infrared diffuse reflectance spectra were collected. The quantitative DP calibration models of one mixed cotton & wood and two separate cotton and wood pulps were established by partial least squares (PLS). The optimum models were developed using the spectra pretreated by derivative, autoscaling and mean-centering, and their performance is as follows: correlation coefficient of 0.980, 0.993 and 0.886, and RMSEP of 147, 143 and 53, respectively. The accuracy of NIR method was also studied. The results show that the accuracy of the two separate models of cotton and wood is better than that of the mixed model, and the precision of the two separate models is better than that of GB/T9107-1999. The identification model of cotton and wood was also established using principal component analysis (PCA). The result shows that the spectra of cotton and wood pulp have obvious difference, and the model can identify successfully the two kinds of pulp. The result indicates that the new NIR method is feasible to realize the on-line analysis of polymerization degree of natural cellulose pulp with its advantage of rapidness and easy operation.

  18. Comparison of visible and near infrared reflectance spectroscopy on fat to authenticate dietary history of lambs.

    PubMed

    Huang, Y; Andueza, D; de Oliveira, L; Zawadzki, F; Prache, S

    2015-11-01

    Since consumers are showing increased interest in the origin and method of production of their food, it is important to be able to authenticate dietary history of animals by rapid and robust methods used in the ruminant products. Promising breakthroughs have been made in the use of spectroscopic methods on fat to discriminate pasture-fed and concentrate-fed lambs. However, questions remained on their discriminatory ability in more complex feeding conditions, such as concentrate-finishing after pasture-feeding. We compared the ability of visible reflectance spectroscopy (Vis RS, wavelength range: 400 to 700 nm) with that of visible-near-infrared reflectance spectroscopy (Vis-NIR RS, wavelength range: 400 to 2500 nm) to differentiate between carcasses of lambs reared with three feeding regimes, using partial least square discriminant analysis (PLS-DA) as a classification method. The sample set comprised perirenal fat of Romane male lambs fattened at pasture (P, n = 69), stall-fattened indoors on commercial concentrate and straw (S, n = 55) and finished indoors with concentrate and straw for 28 days after pasture-feeding (PS, n = 65). The overall correct classification rate was better for Vis-NIR RS than for Vis RS (99.0% v. 95.1%, P < 0.05). Vis-NIR RS allowed a correct classification rate of 98.6%, 100.0% and 98.5% for P, S and PS lambs, respectively, whereas Vis RS allowed a correct classification rate of 98.6%, 94.5% and 92.3% for P, S and PS lambs, respectively. This study suggests the likely implication of molecules absorbing light in the non-visible part of the Vis-NIR spectra (possibly fatty acids), together with carotenoid and haem pigments, in the discrimination of the three feeding regimes.

  19. In-vivo reflection spectroscopy measurements in pig brain during stereotactic surgery

    NASA Astrophysics Data System (ADS)

    Antonsson, Johan; Eriksson, Ola; Wardell, Karin

    2003-07-01

    Radio frequency (RF) lesioning in the human brain is a common surgical therapy for relieving severe pain as well as for movement disorders such as Parkinsonia. During the procedure a small electrode is introduced by stereotactic means towards a target area localized by CT or MRI. An RF-current is applied through the electrode tip when positioned in the target area. The tissue in the proximity of the tip is heated by the current and finally coagulated. The overall aim of this study was to improve the RF-technique and its ability to estimate lesion size by means of optical methods. Therefore, the optical differences between white and gray matter, as well as lesioned and unlesioned tissue were investigated. Reflection spectroscopy measurements in the range of 450-800 nm were conducted on fully anesthetized pigs during stereotactic RF-lesioning (n=6). Light from a tungsten lamp was guided to the electrode tip through optical fibers, inserted along a 2 mm in diameter monopolar RF-electrode. Measurements were performed in steps of 0-10 mm from the target in each hemisphere towards the entry point of the skull. In the central gray of the porcine brain measurements were performed both before and after the creation of a lesion. A total of 55 spectra were collected during this study. Correlation to tissue type was done using post-operative MR-images. The spectral signature for white and gray matter differs significantly for the entire spectral range of 450-800 nm. Pre- and post-lesioning reflection spectroscopy showed the largest differences below 600 and above 620 nm, which implies that lasers within this wavelength range may be useful for in-vivo measurements of tissue optical changes during RF-lesioning.

  20. An innovative spectroelectrochemical reflection cell for rapid protein electrochemistry and ultraviolet/visible/infrared spectroscopy.

    PubMed

    Bernad, Sophie; Mäntele, Werner

    2006-04-15

    A novel electrochemical reflection cell combining electrochemical techniques and spectroscopy which uses a solid gold working electrode as an optical mirror is described. This cell can be used at path lengths as low as a few micrometers and thus is suitable for ultraviolet/visible (UV/Vis) and infrared spectroscopy even for aqueous solutions and suspensions. The cell was designed for small sample volumes of only a few microliters, thus reducing the effort for sample preparation. Due to the short path length of some micrometers, the entire volume is within the Nernst diffusion layer, hence resulting in fast equilibration. Evaluation of the technique is described with direct electrochemistry of horse heart cytochrome c at the gold electrode modified with 4,4'-dithiodipyridine. Cyclic voltammograms indicate rapid and reversible electrochemistry with the correct midpoint potential (52 mV vs Ag/AgCl/3 M KCl). Chronoamperometry and coulometry confirm rapid and complete oxidation and reduction; the cell volume can be entirely fully reduced within less than 10-20 s. Spectroscopy in the UV/Vis region, with potentials at the working electrode stepped between -390 and 390 mV, show perfect titration of the cytochrome c heme bands. A Nernst fit of the alpha band absorption, with redox potential Em and number of electrons n left as parameters, yields a midpoint potential of 49 mV and n=0.9. The potential of this cell in the investigation of biological electron transfer reactions and in the study of bioenergetic systems is discussed.

  1. A total internal reflection-fluorescence correlation spectroscopy setup with pulsed diode laser excitation

    NASA Astrophysics Data System (ADS)

    Weger, Lukas; Hoffmann-Jacobsen, Kerstin

    2017-09-01

    Fluorescence correlation spectroscopy (FCS) measures fluctuations in a (sub-)femtoliter volume to analyze the diffusive behavior of fluorescent particles. This highly sensitive method has proven to be useful for the analysis of dynamic biological systems as well as in chemistry, physics, and material sciences. It is routinely performed with commercial fluorescence microscopes, which provide a confined observation volume by the confocal technique. The evanescent wave of total internal reflectance (TIR) is used in home-built systems to permit a surface sensitive FCS analysis. We present a combined confocal and TIR-FCS setup which uses economic low-power pulsed diode lasers for excitation. Excitation and detection are coupled to time-correlated photon counting hardware. This allows simultaneous fluorescence lifetime and FCS measurements in a surface-sensitive mode. Moreover, the setup supports fluorescence lifetime correlation spectroscopy at surfaces. The excitation can be easily switched between TIR and epi-illumination to compare the surface properties with those in liquid bulk. The capabilities of the presented setup are demonstrated by measuring the diffusion coefficients of a free dye molecule, a labeled polyethylene glycol, and a fluorescent nanoparticle in confocal as well as in TIR-FCS.

  2. Angle-tunable enhanced infrared reflection absorption spectroscopy via grating-coupled surface plasmon resonance.

    PubMed

    Petefish, Joseph W; Hillier, Andrew C

    2014-03-04

    Surface enhanced infrared absorption (SEIRA) spectroscopy is an attractive method for increasing the prominence of vibrational modes in infrared spectroscopy. To date, the majority of reports associated with SEIRA utilize localized surface plasmon resonance from metal nanoparticles to enhance electromagnetic fields in the region of analytes. Limited work has been performed using propagating surface plasmons as a method for SEIRA excitation. In this report, we demonstrate angle-tunable enhancement of vibrational stretching modes associated with a thin poly(methyl methacrylate) (PMMA) film that is coupled to a silver-coated diffraction grating. Gratings are fabricated using laser interference lithography to achieve precise surface periodicities, which can be used to generate surface plasmons that overlap with specific vibrational modes in the polymer film. Infrared reflection absorption spectra are presented for both bare silver and PMMA-coated silver gratings at a range of angles and polarization states. In addition, spectra were obtained with the grating direction oriented perpendicular and parallel to the infrared source in order to isolate plasmon enhancement effects. Optical simulations using the rigorous coupled-wave analysis method were used to identify the origin of the plasmon-induced enhancement. Angle-dependent absorption measurements achieved signal enhancements of more than 10-times the signal in the absence of the plasmon.

  3. Multipitched Diffraction Gratings for Surface Plasmon Resonance-Enhanced Infrared Reflection Absorption Spectroscopy.

    PubMed

    Petefish, Joseph W; Hillier, Andrew C

    2015-11-03

    We demonstrate the application of metal-coated diffraction gratings possessing multiple simultaneous pitch values for surface enhanced infrared absorption (SEIRA) spectroscopy. SEIRA increases the magnitude of vibrational signals in infrared measurements by one of several mechanisms, most frequently involving the enhanced electric field associated with surface plasmon resonance (SPR). While the majority of SEIRA applications to date have employed nanoparticle-based plasmonic systems, recent advances have shown how various metals and structures lead to similar signal enhancement. Recently, diffraction grating couplers have been demonstrated as a highly tunable platform for SEIRA. Indeed, gratings are an experimentally advantageous platform due to the inherently tunable nature of surface plasmon excitation at these surfaces since both the grating pitch and incident angle can be used to modify the spectral location of the plasmon resonance. In this work, we use laser interference lithography (LIL) to fabricate gratings possessing multiple pitch values by subjecting photoresist-coated glass slides to repetitive exposures at varying orientations. After metal coating, these gratings produced multiple, simultaneous plasmon peaks associated with the multipitched surface, as identified by infrared reflectance measurements. These plasmon peaks could then be coupled to vibrational modes in thin films to provide localized enhancement of infrared signals. We demonstrate the flexibility and tunability of this platform for signal enhancement. It is anticipated that, with further refinement, this approach might be used as a general platform for broadband enhancement of infrared spectroscopy.

  4. Total internal reflection photoacoustic spectroscopy for the detection of β-hematin

    NASA Astrophysics Data System (ADS)

    Goldschmidt, Benjamin S.; Sudduth, Amanda S. M.; Samson, Edward B.; Whiteside, Paul J. D.; Bhattacharyya, Kiran D.; Viator, John A.

    2012-06-01

    Evanescent field sensing methods are currently used to detect many different types of disease markers and biologically important chemicals such as the HER2 breast cancer receptor. Hinoue et al. used Total Internal Reflection Photoacoustic Spectroscopy (TIRPAS) as a method of using the evanescent field to detect an optically opaque dye at a sample interface. Although their methods were successful at detecting dyes, the results at that time did not show a very practical spectroscopic technique, which was due to the less than typical sensitivity of TIRPAS as a spectroscopy modality given the low power (~1 to 2 W) lasers being used. Contrarily, we have used an Nd:YAG laser with a five nanosecond pulse that gives peak power of 1 MW coupled with the TIRPAS system to increase the sensitivity of this technique for biological material sensing. All efforts were focused on the eventual detection of the optically absorbing material, hemozoin, which is created as a byproduct of a malarial infection in blood. We used an optically analogous material, β-hematin, to determine the potential for detection in the TIRPAS system. In addition, four properties which control the sensitivity were investigated to increase understanding about the sensor's function as a biosensing method.

  5. Characterization of ultrathin silicon oxide films with mirror-enhanced polarized reflectance Fourier transform infrared spectroscopy

    NASA Astrophysics Data System (ADS)

    Cui, Zhenjiang; Takoudis, Christos G.

    2001-05-01

    Ultrathin silicon oxide films thermally grown on Si (100) are characterized with mirror-enhanced polarized reflectance Fourier transform infrared spectroscopy (MEPR-FTIR). MEPR-FTIR is proposed to effectively probe properties of ultrathin films. Using a mirror and a polarizer, MEPR-FTIR overcomes the difficulty of weak IR intensities normally encountered in ultrathin gate dielectrics such as SiO2; the intensity of the silicon oxide longitudinal optical (LO) mode is found to increase by a factor of about 20. Therefore, FTIR spectrometers with sensitivity down to 0.01% may allow even submonolayer probing of silicon oxide on Si substrates. The relationship between film thickness and IR intensity of the LO mode at 1252 cm-1 is presented for silicon oxide films as thin as a few Å thick. Independent measurements with ellipsometry, cross-sectional transmission electron microscopy, and x-ray photoelectron spectroscopy as well as theoretical predictions using the general Fresnel function are utilized. Although nonlinear overall, the theoretically predicted relationship between the MEPR-FTIR intensity and film thickness is almost linear within the range 0-50 Å. Experimental data are shown to agree very well with the theoretical calculations for two different kinds of oxides: thermal oxides grown at 1050 °C and native oxides. Such results suggest that the MEPR-FTIR can be useful as an ex situ or in situ technique for thickness measurements and, in fact, for other properties of ultrathin gate dielectrics.

  6. Early detection of cell activation events by means of attenuated total reflection Fourier transform infrared spectroscopy

    NASA Astrophysics Data System (ADS)

    Titus, Jitto; Filfili, Chadi; Hilliard, Julia K.; Ward, John A.; Unil Perera, A. G.

    2014-06-01

    Activation of Jurkat T-cells in culture following treatment with anti-CD3 (Cluster of Differentiation 3) antibody is detectable by interrogating the treated T-cells using the Attenuated Total Reflection-Fourier Transform Infrared (ATR-FTIR) Spectroscopy technique. Cell activation was detected within 75 min after the cells encountered specific immunoglobulin molecules. Spectral markers noted following ligation of the CD3 receptor with anti CD3 antibody provides proof-of-concept that ATR-FTIR spectroscopy is a sensitive measure of molecular events subsequent to cells interacting with anti-CD3 Immunoglobulin G. The resultant ligation of the CD3 receptor results in the initiation of well defined, specific signaling pathways that parallel the measurable molecular events detected using ATR-FTIR. Paired t-test with post-hoc Bonferroni corrections for multiple comparisons has resulted in the identification of statistically significant spectral markers (p < 0.02) at 1367 and 1358 cm-1. Together, these data demonstrate that early treatment-specific cellular events can be measured by ATR-FTIR and that this technique can be used to identify specific agents via the responses of the cell biosensor at different time points postexposure.

  7. Endoscopic reflectance spectrophotometry and visible light spectroscopy in clinical gastrointestinal studies.

    PubMed

    Leung, Felix W

    2008-06-01

    The use of reflectance spectrophotometry (RS) for mucosal hemodynamic measurement relies on the recognition of changes in indexes of mucosal hemoglobin concentration and oxygen saturation. Endoscopic application in clinical studies has confirmed important observations demonstrated in animal experiments. The vasoconstriction induced by propranolol, vasopressin, glypressin, or somatostatin in the portal hypertensive gastric mucosa and the reduction of gastroduodenal mucosal perfusion by nonsteroidal anti-inflammatory drugs (NSAIDs) or smoking, mesenteric venoconstriction associated with systemic hypoxia, and acid-induced duodenal hyperemia are important examples. Prognostic predictions include the development of stress-induced gastric ulcerations in patients with significant reductions in gastric perfusion after thermal or head injury, or the demonstration of delayed gastric or duodenal ulcer healing when the hyperemia at the ulcer margin fails to materialize. In mechanical-ventilator-dependent patients with sepsis, a significantly reduced gastric mucosal RS measurement portends a grave prognosis (mortality >80%). Recent advances in technology resulted in the construction and validation of instruments for visible light spectroscopy. Measurements focused on tissue oxygen saturation demonstrated epinephrine and vessel-ligation-induced vasoconstriction, the absence of ischemia in radiation-induced rectal telangiectasias, and gut ischemia responsive to revascularization treatment. Endoscopic RS and visible light spectroscopy are suitable for assessing the role of blood flow in conditions with a lesser degree of ischemia and for testing the hypothesis that functional dyspepsia and dysmotility syndromes may be due to gut ischemia.

  8. Forensic identification of pharmaceuticals via portable X-ray fluorescence and diffuse reflectance spectroscopy.

    PubMed

    Shutic, Sarah; Chakraborty, Somsubhra; Li, Bin; Weindorf, David C; Sperry, Kathy; Casadonte, Dominick

    2017-10-01

    The importance of unknown substance identification in forensic science is vital to implementation or exclusion of criminal charges against an offender. While traditional laboratory measures include the use of gas chromatography/mass spectroscopy, an alternate method has been proposed to efficiently perform presumptive analyses of unknown substances at a crime scene or at airport security points. The use of portable X-ray fluorescence (PXRF) and visible near infrared diffuse reflectance spectroscopy (DRS) to determine elemental composition was applied to pharmaceutical medications (n=83), which were then categorized into 21 classifications based on their active ingredients. Each pharmaceutical was processed by standard laboratory procedures and scanned with both PXRF and DRS. Lastly, the datasets obtained were compared using multivariate statistical analyses. The aforementioned devices indicate that differentiation of unknown substances is clearly demonstrated among the samples with 73.49% DRS classification accuracy. Thus, the approach shows promise for future development as a rapid analytical technique for unknown pharmaceutical substances and/or illicit narcotics. Copyright © 2017 Elsevier B.V. All rights reserved.

  9. Identification of species' blood by attenuated total reflection (ATR) Fourier transform infrared (FT-IR) spectroscopy.

    PubMed

    Mistek, Ewelina; Lednev, Igor K

    2015-09-01

    Blood is one of the most common and informative forms of biological evidence found at a crime scene. A very crucial step in forensic investigations is identifying a blood stain's origin. The standard methods currently employed for analyzing blood are destructive to the sample and time-consuming. In this study, attenuated total reflection (ATR) Fourier transform infrared (FT-IR) spectroscopy is used as a confirmatory, nondestructive, and rapid method for distinction between human and animal (nonhuman) blood. Partial least squares-discriminant analysis (PLS-DA) models were built and demonstrated complete separation between human and animal donors, as well as distinction between three separate species: human, cat, and dog. Classification predictions of unknown blood donors were performed by the model, resulting in 100 % accuracy. This study demonstrates ATR FT-IR spectroscopy's great potential for blood stain analysis and species discrimination, both in the lab and at a crime scene since portable ATR FT-IR instrumentation is commercially available.

  10. Tracing the acetalization of cyclohexanone in CO2-expanded alcohols by attenuated total reflection infrared spectroscopy.

    PubMed

    Seki, Tsunetake; Andanson, Jean-Michel; Jutz, Fabian; Baiker, Alfons

    2009-09-01

    The CO(2)-catalyzed acetalization is regarded as a promising alternative to the conventional acid-catalyzed method from a viewpoint of green chemistry (C. A. Eckert et al., Ind. Eng. Chem. Res. 43, 2605 (2004)). We have applied in situ attenuated total reflection infrared (ATR-IR) spectroscopy for elucidating and monitoring the acetalization of cyclohexanone in CO(2)-expanded ethylene glycol and methanol at 50 degrees C and 3 MPa. The ATR-IR spectra of the reaction mixtures periodically recorded with a ZnSe crystal demonstrate that ATR-IR spectroscopy is a practical tool for tracing the kinetics of acetalizations in situ. In addition, the rate of CO(2) dissolution as well as CO(2) solubility into the cyclohexanone-alcohol mixtures could be evaluated from the CO(2)-nu(3)-antisymmetric stretching band. The ZnSe ATR crystal, however, was corroded during longer use under the acidic conditions realized by the dissolution of CO(2) in the alcohols. In contrast, the corrosion did not occur when a Ge crystal was used instead of a ZnSe crystal, and therefore the application of a Ge ATR crystal is recommended for continuous long-term experiments with these media.

  11. In-situ FTIR reflection spectroscopy for the semiconductor electrolyte interfaces

    NASA Astrophysics Data System (ADS)

    Chandrasekaran, K.; Bockris, J. O'M.

    1986-10-01

    Polarization modulation fourier transform infrared reflection-absorption spectroscopy (FTIR-RAS) and subtractively normalized interfacial fourier transform infrared spectroscopy (SNIF-TIRS) have been applied to the studies of adsorption of ions and neutral molecules on p-silicon and p-gallium phosphide electrodes in aqueous as well as non-aqueous solutions. The potential and concentration dependence of adsorption were observed. Thiourea is adsorbed on silicon through the sulfur atom and adsorption increases in the anodic direction. Thiourea adsorption on silicon follows a Temkin type isotherm and the free energy adsorption was calculated to be - 5.63 kJ/mole. Acetate in aqueous medium is adsorbed as neutral acetic acid molecule on silicon. The potential dependence of adsorption passes through a maximum which lies close to the potential of zero charge. The tetraethylammonium ion in acetonitrile is adsorbed according to a Langmuir isotherm. Acetonitrile is adsorbed strongly on gallium phosphide when used as a solvent for sodium acetate at cathodic potentials. At anodic potentials adsorbed acetonitrile is replaced by acetate ions. Adsorption of acetate ion starts at potentials cathodic to the potential of zero charge, due to specific adsorption. Ammonium ion adsorption on gallium phosphide occurs through two hydrogen atoms and the other two hydrogen atoms project towards the solution. Two peaks corresponding to different N-H deformation vibrations are observed at 1560 and 1700 cm -1. At sufficiently cathodic potentials, adsorbed ammonium ions are reduced.

  12. Attenuated total reflectance Fourier-transform infrared spectroscopy of carboxylic acids adsorbed onto mineral surfaces

    NASA Astrophysics Data System (ADS)

    Kubicki, J. D.; Schroeter, L. M.; Itoh, M. J.; Nguyen, B. N.; Apitz, S. E.

    1999-09-01

    A suite of naturally-occurring carboxylic acids (acetic, oxalic, citric, benzoic, salicylic and phthalic) and their corresponding sodium salts were adsorbed onto a set of common mineral substrates (quartz, albite, illite, kaolinite and montmorillonite) in batch slurry experiments. Solution pH's of approximately 3 and 6 were used to examine the effects of pH on sorption mechanisms. Attenuated total reflectance Fourier-transform infrared (ATR FTIR) spectroscopy was employed to obtain vibrational frequencies of the organic ligands on the mineral surfaces and in solution. UV/visible spectroscopy on supernatant solutions was also employed to confirm that adsorption from solution had taken place for benzoic, salicylic and phthalic acids. Molecular orbital calculations were used to model possible surface complexes and interpret the experimental spectra. In general, the tectosilicates, quartz and albite feldspar, did not chemisorb (i.e., strong, inner-sphere adsorption) the carboxylate anions in sufficient amounts to produce infrared spectra of the organics after rinsing in distilled water. The clays (illite, kaolinite and montmorillonite) each exhibited similar ATR FTIR spectra. However, the illite sample used in this study reacted to form strong surface and aqueous complexes with salicylic acid before being treated to remove free Fe-hydroxides. Chemisorption of carboxylic acids onto clays is shown to be limited without the presence of Fe-hydroxides within the clay matrix.

  13. Brain tumour differentiation: rapid stratified serum diagnostics via attenuated total reflection Fourier-transform infrared spectroscopy.

    PubMed

    Hands, James R; Clemens, Graeme; Stables, Ryan; Ashton, Katherine; Brodbelt, Andrew; Davis, Charles; Dawson, Timothy P; Jenkinson, Michael D; Lea, Robert W; Walker, Carol; Baker, Matthew J

    2016-05-01

    The ability to diagnose cancer rapidly with high sensitivity and specificity is essential to exploit advances in new treatments to lead significant reductions in mortality and morbidity. Current cancer diagnostic tests observing tissue architecture and specific protein expression for specific cancers suffer from inter-observer variability, poor detection rates and occur when the patient is symptomatic. A new method for the detection of cancer using 1 μl of human serum, attenuated total reflection-Fourier transform infrared spectroscopy and pattern recognition algorithms is reported using a 433 patient dataset (3897 spectra). To the best of our knowledge, we present the largest study on serum mid-infrared spectroscopy for cancer research. We achieve optimum sensitivities and specificities using a Radial Basis Function Support Vector Machine of between 80.0 and 100 % for all strata and identify the major spectral features, hence biochemical components, responsible for the discrimination within each stratum. We assess feature fed-SVM analysis for our cancer versus non-cancer model and achieve 91.5 and 83.0 % sensitivity and specificity respectively. We demonstrate the use of infrared light to provide a spectral signature from human serum to detect, for the first time, cancer versus non-cancer, metastatic cancer versus organ confined, brain cancer severity and the organ of origin of metastatic disease from the same sample enabling stratified diagnostics depending upon the clinical question asked.

  14. Rapid profiling of Swiss cheese by attenuated total reflectance (ATR) infrared spectroscopy and descriptive sensory analysis.

    PubMed

    Kocaoglu-Vurma, N A; Eliardi, A; Drake, M A; Rodriguez-Saona, L E; Harper, W J

    2009-08-01

    The acceptability of cheese depends largely on the flavor formed during ripening. The flavor profiles of cheeses are complex and region- or manufacturer-specific which have made it challenging to understand the chemistry of flavor development and its correlation with sensory properties. Infrared spectroscopy is an attractive technology for the rapid, sensitive, and high-throughput analysis of foods, providing information related to its composition and conformation of food components from the spectra. Our objectives were to establish infrared spectral profiles to discriminate Swiss cheeses produced by different manufacturers in the United States and to develop predictive models for determination of sensory attributes based on infrared spectra. Fifteen samples from 3 Swiss cheese manufacturers were received and analyzed using attenuated total reflectance infrared spectroscopy (ATR-IR). The spectra were analyzed using soft independent modeling of class analogy (SIMCA) to build a classification model. The cheeses were profiled by a trained sensory panel using descriptive sensory analysis. The relationship between the descriptive sensory scores and ATR-IR spectra was assessed using partial least square regression (PLSR) analysis. SIMCA discriminated the Swiss cheeses based on manufacturer and production region. PLSR analysis generated prediction models with correlation coefficients of validation (rVal) between 0.69 and 0.96 with standard error of cross-validation (SECV) ranging from 0.04 to 0.29. Implementation of rapid infrared analysis by the Swiss cheese industry would help to streamline quality assurance.

  15. Quantifying amyloid fibrils in protein mixtures via infrared attenuated-total-reflection spectroscopy.

    PubMed

    Wang, Pei; Bohr, Wilhelm; Otto, Markus; Danzer, Karin M; Mizaikoff, Boris

    2015-05-01

    Amyloid aggregation of proteins is usually associated with amyloid diseases. A distinct feature of protein aggregation is the increase of crossed β-sheet structures. Infrared attenuated-total-reflectance (IR-ATR) spectroscopy is a sensitive optical technique that has the potential to provide secondary structure characteristics of proteins even in complex biological samples. In this study we report the analysis of secondary structures of proteins, using the amide I band for the detection and quantification of amyloid fibrils in protein mixtures by use of IR-ATR techniques, at comparatively low sample concentrations. From the experimental results, an analytical model of the relationship between the IR spectra of protein mixtures and the individual mixture components was established using spectral-deconvolution procedures and curve-fitting methods. On the basis of this model, four ratios were shown to provide direct information on amyloid aggregated fibrils via the increase of crossed β-sheet structures in protein-mixture samples. In conclusion, this study confirms the utility of IR spectroscopy for analyzing protein mixtures and for identifying amyloid fibril information within such complex multi-component samples.

  16. Investigating Ultrasonic Diffraction Grating Spectroscopy and Reflection Techniques for Characterizing Slurry Properties

    SciTech Connect

    Burgess, L.W.; Brodsky, A.M.

    2005-12-15

    The U.S. Department of Energy (DOE) has millions of gallons of radioactive liquid and sludge wastes that must be retrieved from underground storage tanks. This waste, in the form of slurries, must be transferred and processed to a final form, such as glass logs. On-line instrumentation to measure the properties of these slurries in real-time during transport is needed in order to prevent plugging and reduce excessive dilution. The results, describes a collaborative effort between Pacific Northwest National Laboratory (PNNL) and the University of Washington to develop a completely new method for using ultrasonics to measure the particle size and viscosity of a slurry. The concepts are based on work in optics on grating-light-reflection spectroscopy (GLRS) at the University of Washington and work on ultrasonic diffraction grating spectroscopy (UDGS) carried out at PNNL. The objective of the research was to extend the GLRS theory for optics to ultrasonics, and to demonstrate its capabilities of UDGS. The proposed ultrasonic method could result in an instrument that would be simple, rugged, and very compact, allowing it to be implemented as part of a pipeline wall at facilities across the DOE complex

  17. GMASS ultradeep spectroscopy of galaxies at z ~ 2. VII. Sample selection and spectroscopy

    NASA Astrophysics Data System (ADS)

    Kurk, J.; Cimatti, A.; Daddi, E.; Mignoli, M.; Pozzetti, L.; Dickinson, M.; Bolzonella, M.; Zamorani, G.; Cassata, P.; Rodighiero, G.; Franceschini, A.; Renzini, A.; Rosati, P.; Halliday, C.; Berta, S.

    2013-01-01

    Context. Ultra-deep imaging of small parts of the sky has revealed many populations of distant galaxies, providing insight into the early stages of galaxy evolution. Spectroscopic follow-up has mostly targeted galaxies with strong emission lines at z > 2 or concentrated on galaxies at z < 1. Aims: The populations of both quiescent and actively star-forming galaxies at 1 < z < 2 are still under-represented in our general census of galaxies throughout the history of the Universe. In the light of galaxy formation models, however, the evolution of galaxies at these redshifts is of pivotal importance and merits further investigation. In addition, photometry provides only limited clues about the nature and evolutionary status of these galaxies. We therefore designed a spectroscopic observing campaign of a sample of both massive, quiescent and star-forming galaxies at z > 1.4. Methods: To determine redshifts and physical properties, such as metallicity, dust content, dynamical masses, and star formation history, we performed ultra-deep spectroscopy with the red-sensitive optical spectrograph FORS2 at the Very Large Telescope. We first constructed a sample of objects, within the CDFS/GOODS area, detected at 4.5 μm, to be sensitive to stellar mass rather than star formation intensity. The spectroscopic targets were selected with a photometric redshift constraint (z > 1.4) and magnitude constraints (BAB < 26, IAB < 26.5), which should ensure that these are faint, distant, and fairly massive galaxies. Results: We present the sample selection, survey design, observations, data reduction, and spectroscopic redshifts. Up to 30 h of spectroscopy of 174 spectroscopic targets and 70 additional objects enabled us to determine 210 redshifts, of which 145 are at z > 1.4. The redshift distribution is clearly inhomogeneous with several pronounced redshift peaks. From the redshifts and photometry, we deduce that the BzK selection criteria are efficient (82%) and suffer low contamination

  18. Estimate of heavy metal contamination in soils after a mining accident using reflectance spectroscopy.

    PubMed

    Kemper, Thomas; Sommer, Stefan

    2002-06-15

    The possibility to adapt chemometrics approaches for the quantitative estimation of heavy metals in soils polluted by a mining accident was explored. In April 1998, the dam of a mine tailings pond in Aznalcóllar (Spain) collapsed and flooded an area of more than 4000 ha with pyritic sludge contaminated with high concentrations of heavy metals. Six months after the end of the first remediation campaign, soil samples were collected for chemical analysis and measurement of visible to near-infrared reflectance (0.35-2.4 microm). Concentrations for As, Cd, Cu, Fe, Hg, Pb, S, Sb, and Zn were well above background values. Prediction of heavy metals was achieved by stepwise multiple linear regression analysis (MLR) and an artificial neural network (ANN) approach. It was possible to predict six out of nine elements with high accuracy. Best R2 between predicted and chemically analyzed concentrations were As, 0.84; Fe, 0.72; Hg, 0.96; Pb, 0.95; S, 0.87; and Sb, 0.93. Results for Cd (0.51), Cu (0.43), and Zn (0.24) were not significant. MLR and ANN both achieved similar results. Correlation analysis revealed that most wavelengths important for prediction could be attributed to absorptions features of iron and iron oxides. These results indicate that it is feasible to predict heavy metals in soils contaminated by mining residuals using the rapid and cost-effective reflectance spectroscopy.

  19. Anatomy-Based Algorithms for Detecting Oral Cancer Using Reflectance and Fluorescence Spectroscopy

    PubMed Central

    McGee, Sasha; Mardirossian, Vartan; Elackattu, Alphi; Mirkovic, Jelena; Pistey, Robert; Gallagher, George; Kabani, Sadru; Yu, Chung-Chieh; Wang, Zimmern; Badizadegan, Kamran; Grillone, Gregory; Feld, Michael S.

    2010-01-01

    Objectives We used reflectance and fluorescence spectroscopy to noninvasively and quantitatively distinguish benign from dysplastic/malignant oral lesions. We designed diagnostic algorithms to account for differences in the spectral properties among anatomic sites (gingiva, buccal mucosa, etc). Methods In vivo reflectance and fluorescence spectra were collected from 71 patients with oral lesions. The tissue was then biopsied and the specimen evaluated by histopathology. Quantitative parameters related to tissue morphology and biochemistry were extracted from the spectra. Diagnostic algorithms specific for combinations of sites with similar spectral properties were developed. Results Discrimination of benign from dysplastic/malignant lesions was most successful when algorithms were designed for individual sites (area under the receiver operator characteristic curve [ROC-AUC], 0.75 for the lateral surface of the tongue) and was least accurate when all sites were combined (ROC-AUC, 0.60). The combination of sites with similar spectral properties (floor of mouth and lateral surface of the tongue) yielded an ROC-AUC of 0.71. Conclusions Accurate spectroscopic detection of oral disease must account for spectral variations among anatomic sites. Anatomy-based algorithms for single sites or combinations of sites demonstrated good diagnostic performance in distinguishing benign lesions from dysplastic/malignant lesions and consistently performed better than algorithms developed for all sites combined. PMID:19999369

  20. Objective determination of skin phototypes in healthy children by diffuse reflectance spectroscopy.

    PubMed

    Petrovajova, M; Carska, N; Novotny, M

    2014-01-01

    The clinical method of evaluating the color of the skin based on visual assessment is subjective and thus inaccurate. The objective determination of skin phototypes and levels of melanin in the skin is important for diagnosing the pigment disorders and also for adequate photoprotection. Diffuse reflectance spectroscopy (DRS) is a non-invasive, precise and objective method for quantifying the melanin levels. The aim of this study is to assess the characteristic DRS spectrum of healthy skin in children and to detect the differences between them based on age, gender and skin phototype. Skin pigmentation was measured by DRS in 73 children patients with experimental spectrophotometer UM-ES600. The amount of melanin is quantified from the obtained DRS spectra by proposed melanin quantification angle α obtained by comparing the reflectance properties of skin sample and universal depigmented sample (albino skin). We evaluated spectroscopic characteristics of children's healthy skin depending on age, gender and phototype. The value of melanin quantification angle α grew proportionally from phototype I to phototype IV, without any correlation to age or gender. We confirmed a clear association between clinical determination of Fitzpatrick's skin phototypes and objective data collected by DRS and related angle α. Our proposed index quantifies the difference in melanin levels in healthy children skin and also for different skin phototypes. The proposed method and melanin quantification angle α can further be used for the objectification of the progress of pigmentary diseases or for monitoring the effect of their therapy (Tab. 5, Fig. 4, Ref. 29).

  1. Rapid estimation of nutritional elements on citrus leaves by near infrared reflectance spectroscopy.

    PubMed

    Galvez-Sola, Luis; García-Sánchez, Francisco; Pérez-Pérez, Juan G; Gimeno, Vicente; Navarro, Josefa M; Moral, Raul; Martínez-Nicolás, Juan J; Nieves, Manuel

    2015-01-01

    Sufficient nutrient application is one of the most important factors in producing quality citrus fruits. One of the main guides in planning citrus fertilizer programs is by directly monitoring the plant nutrient content. However, this requires analysis of a large number of leaf samples using expensive and time-consuming chemical techniques. Over the last 5 years, it has been demonstrated that it is possible to quantitatively estimate certain nutritional elements in citrus leaves by using the spectral reflectance values, obtained by using near infrared reflectance spectroscopy (NIRS). This technique is rapid, non-destructive, cost-effective and environmentally friendly. Therefore, the estimation of macro and micronutrients in citrus leaves by this method would be beneficial in identifying the mineral status of the trees. However, to be used effectively NIRS must be evaluated against the standard techniques across different cultivars. In this study, NIRS spectral analysis, and subsequent nutrient estimations for N, K, Ca, Mg, B, Fe, Cu, Mn, and Zn concentration, were performed using 217 leaf samples from different citrus trees species. Partial least square regression and different pre-processing signal treatments were used to generate the best estimation against the current best practice techniques. It was verified a high proficiency in the estimation of N (Rv = 0.99) and Ca (Rv = 0.98) as well as achieving acceptable estimation for K, Mg, Fe, and Zn. However, no successful calibrations were obtained for the estimation of B, Cu, and Mn.

  2. Characterization of historic silk by polarized attenuated total reflectance Fourier transform infrared spectroscopy for informed conservation.

    PubMed

    Garside, Paul; Lahlil, Sophia; Wyeth, Paul

    2005-10-01

    When assessing historic textiles and considering appropriate conservation, display, and storage strategies, characterizing the physical condition of the textiles is essential. Our work has concentrated on developing nondestructive or micro-destructive methodologies that will permit this. Previously, we have demonstrated a correlation between the physical deterioration of unweighted and "pink" tin (IV) chloride weighted silk and certain measurable spectroscopic and chromatographic signatures, derived from polarized Fourier transform infrared attenuated total reflectance (FTIR-ATR) spectroscopy (Pol-ATR) and high-performance liquid chromatography (HPLC) microsampling analyses. The application of the Pol-ATR technique to aged silk characterization has now been extended to include a more comprehensive range of weighting methods and aging regimes. This was intended to replicate the full spectrum of states of deterioration observed in silk textiles, from pristine to heavily degraded. Breaking strength was employed as a measure of the physical integrity of the fibers, and, as expected, decreased with aging. An orientational crystallinity parameter, reflecting the microstructural ordering of the fibroin polymer within the fibers, was derived from the Pol-ATR spectra. A good correlation was observed between the breaking strength of the variety of fibers and this parameter. This suggests that the physical state of historic silk fabrics might be adequately characterized for conservation purposes by such indirect micromethodology.

  3. Optical clearing of melanoma in vivo: characterization by diffuse reflectance spectroscopy and optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Pires, Layla; Demidov, Valentin; Vitkin, I. Alex; Bagnato, Vanderlei; Kurachi, Cristina; Wilson, Brian C.

    2016-08-01

    Melanoma is the most aggressive type of skin cancer, with significant risk of fatality. Due to its pigmentation, light-based imaging and treatment techniques are limited to near the tumor surface, which is inadequate, for example, to evaluate the microvascular density that is associated with prognosis. White-light diffuse reflectance spectroscopy (DRS) and near-infrared optical coherence tomography (OCT) were used to evaluate the effect of a topically applied optical clearing agent (OCA) in melanoma in vivo and to image the microvascular network. DRS was performed using a contact fiber optic probe in the range from 450 to 650 nm. OCT imaging was performed using a swept-source system at 1310 nm. The OCT image data were processed using speckle variance and depth-encoded algorithms. Diffuse reflectance signals decreased with clearing, dropping by ˜90% after 45 min. OCT was able to image the microvasculature in the pigmented melanoma tissue with good spatial resolution up to a depth of ˜300 μm without the use of OCA; improved contrast resolution was achieved with optical clearing to a depth of ˜750 μm in tumor. These findings are relevant to potential clinical applications in melanoma, such as assessing prognosis and treatment responses. Optical clearing may also facilitate the use of light-based treatments such as photodynamic therapy.

  4. Rapid estimation of nutritional elements on citrus leaves by near infrared reflectance spectroscopy

    PubMed Central

    Galvez-Sola, Luis; García-Sánchez, Francisco; Pérez-Pérez, Juan G.; Gimeno, Vicente; Navarro, Josefa M.; Moral, Raul; Martínez-Nicolás, Juan J.; Nieves, Manuel

    2015-01-01

    Sufficient nutrient application is one of the most important factors in producing quality citrus fruits. One of the main guides in planning citrus fertilizer programs is by directly monitoring the plant nutrient content. However, this requires analysis of a large number of leaf samples using expensive and time-consuming chemical techniques. Over the last 5 years, it has been demonstrated that it is possible to quantitatively estimate certain nutritional elements in citrus leaves by using the spectral reflectance values, obtained by using near infrared reflectance spectroscopy (NIRS). This technique is rapid, non-destructive, cost-effective and environmentally friendly. Therefore, the estimation of macro and micronutrients in citrus leaves by this method would be beneficial in identifying the mineral status of the trees. However, to be used effectively NIRS must be evaluated against the standard techniques across different cultivars. In this study, NIRS spectral analysis, and subsequent nutrient estimations for N, K, Ca, Mg, B, Fe, Cu, Mn, and Zn concentration, were performed using 217 leaf samples from different citrus trees species. Partial least square regression and different pre-processing signal treatments were used to generate the best estimation against the current best practice techniques. It was verified a high proficiency in the estimation of N (Rv = 0.99) and Ca (Rv = 0.98) as well as achieving acceptable estimation for K, Mg, Fe, and Zn. However, no successful calibrations were obtained for the estimation of B, Cu, and Mn. PMID:26257767

  5. Infrared characterization of surfaces and coatings by internal-reflection spectroscopy.

    PubMed

    Palik, E D; Gibson, J W; Holm, R T; Hass, M; Braunstein, M; Garcia, B

    1978-06-01

    Some problems which arise in the characterization of surfaces and coatings by internal reflection spectroscopy are described. The ir spectra of bare CaF(2) trapezoids and of ThF(4)- and ZnSe-coated trapezoids exhibit absorption bands in the same spectral region as those of H(2)O and hydrocarbon impurities. In accord with previous investigations, it is observed that the absorptance due to water is much greater in the ThF(4) films than in the ZnSe films or on the CaF(2) surfaces. These results suggest that the water is distributed throughout the ThF(4) films, whereas for ZnSe it resides primarily on the surface. In addition, a number of interesting observations on the desorption and adsorption of water and hydrocarbons to these materials are made. The experimentally observed absorptances are analyzed on the basis of the reflectance for a threelayer system. The analysis enables reasonably quantitative values for the absorption coefficient to be determined for these thin-film coatings.

  6. Determination of Optical and Microvascular Parameters of Port Wine Stains Using Diffuse Reflectance Spectroscopy.

    PubMed

    Qiu, Zhihai; Yao, Guangping; Chen, Defu; Wang, Ying; Gu, Ying; Li, Buhong

    2016-01-01

    Characterizing port wine stains (PWS) with its optical parameters [i.e. absorption coefficient (μ a) and reduced scattering coefficient (μ s')] and microvascular parameters [i.e. blood volume fraction (BVF), mean vessel diameter (MVD), and oxygen saturation (StO2)] is extremely important for elucidating the mechanisms for its light-based treatments, such as pulsed dye laser and photodynamic therapy. In this study, a customized diffuse reflectance spectroscopy (DRS) probe with an appropriate source-detector distance was used to measure the diffuse reflectance spectra of PWS lesions in clinical practice. The results demonstrate that optical parameters of different types of PWS lesions can be accurately extracted by fitting the DRS with diffusion equation. Since the sampling depth of the probe coincides with the depth distribution of abnormal vasculature in PWS, the obtained microvascular parameters of PWS lesions that changed from pink to purple are in agreement with the corresponding physiological conditions. This study suggests that DRS can be utilized to quantitatively determine the optical and microvascular parameters of PWS lesions, which have the potential for planning the protocol and predicting the efficiency for light-based PWS treatments.

  7. Optical clearing of melanoma in vivo: characterization by diffuse reflectance spectroscopy and optical coherence tomography.

    PubMed

    Pires, Layla; Demidov, Valentin; Vitkin, I Alex; Bagnato, Vanderlei; Kurachi, Cristina; Wilson, Brian C

    2016-08-01

    Melanoma is the most aggressive type of skin cancer, with significant risk of fatality. Due to its pigmentation, light-based imaging and treatment techniques are limited to near the tumor surface, which is inadequate, for example, to evaluate the microvascular density that is associated with prognosis. White-light diffuse reflectance spectroscopy (DRS) and near-infrared optical coherence tomography (OCT) were used to evaluate the effect of a topically applied optical clearing agent (OCA) in melanoma in vivo and to image the microvascular network. DRS was performed using a contact fiber optic probe in the range from 450 to 650 nm. OCT imaging was performed using a swept-source system at 1310 nm. The OCT image data were processed using speckle variance and depth-encoded algorithms. Diffuse reflectance signals decreased with clearing, dropping by ∼ 90% after 45 min. OCT was able to image the microvasculature in the pigmented melanoma tissue with good spatial resolution up to a depth of ∼ 300 μm without the use of OCA; improved contrast resolution was achieved with optical clearing to a depth of ∼ 750 μm in tumor. These findings are relevant to potential clinical applications in melanoma, such as assessing prognosis and treatment responses. Optical clearing may also facilitate the use of light-based treatments such as photodynamic therapy.

  8. Impact of one-layer assumption on diffuse reflectance spectroscopy of skin.

    PubMed

    Hennessy, Ricky; Markey, Mia K; Tunnell, James W

    2015-02-01

    Diffuse reflectance spectroscopy (DRS) can be used to noninvasively measure skin properties. To extract skin properties from DRS spectra, you need a model that relates the reflectance to the tissue properties. Most models are based on the assumption that skin is homogenous. In reality, skin is composed of multiple layers, and the homogeneity assumption can lead to errors. In this study, we analyze the errors caused by the homogeneity assumption. This is accomplished by creating realistic skin spectra using a computational model, then extracting properties from those spectra using a one-layer model. The extracted parameters are then compared to the parameters used to create the modeled spectra. We used a wavelength range of 400 to 750 nm and a source detector separation of 250 μm. Our results show that use of a one-layer skin model causes underestimation of hemoglobin concentration [Hb] and melanin concentration [mel]. Additionally, the magnitude of the error is dependent on epidermal thickness. The one-layer assumption also causes [Hb] and [mel] to be correlated. Oxygen saturation is overestimated when it is below 50% and underestimated when it is above 50%. We also found that the vessel radius factor used to account for pigment packaging is correlated with epidermal thickness.

  9. Toward reliable retrieval of functional information of papillary dermis using spatially resolved diffuse reflectance spectroscopy.

    PubMed

    Chen, Yu-Wen; Guo, Jun-Yen; Tzeng, Shih-Yu; Chou, Ting-Chun; Lin, Ming-Jen; Huang, Lynn Ling-Huei; Yang, Chao-Chun; Hsu, Chao-Kai; Tseng, Sheng-Hao

    2016-02-01

    Spatially resolved diffuse reflectance spectroscopy (SRDRS) has been employed to quantify tissue optical properties and its interrogation volume is majorly controlled by the source-to-detector separations (SDSs). To noninvasively quantify properties of dermis, a SRDRS setup that includes SDS shorter than 1 mm is required. It will be demonstrated in this study that Monte Carlo simulations employing the Henyey-Greenstein phase function cannot always precisely predict experimentally measured diffuse reflectance at such short SDSs, and we speculated this could be caused by the non-negligible backward light scattering at short SDSs that cannot be properly modeled by the Henyey-Greenstein phase function. To accurately recover the optical properties and functional information of dermis using SRDRS, we proposed the use of the modified two-layer (MTL) geometry. Monte Carlo simulations and phantom experiment results revealed that the MTL probing geometry was capable of faithfully recovering the optical properties of upper dermis. The capability of the MTL geometry in probing the upper dermis properties was further verified through a swine study, and it was found that the measurement results were reasonably linked to histological findings. Finally, the MTL probe was utilized to study psoriatic lesions. Our results showed that the MTL probe was sensitive to the physiological condition of tissue volumes within the papillary dermis and could be used in studying the physiology of psoriasis.

  10. Quantitative skin color measurements in acanthosis nigricans patients: colorimetry and diffuse reflectance spectroscopy.

    PubMed

    Pattamadilok, Bensachee; Devpura, Suneetha; Syed, Zain U; Agbai, Oma N; Vemulapalli, Pranita; Henderson, Marsha; Rehse, Steven J; Mahmoud, Bassel H; Lim, Henry W; Naik, Ratna; Hamzavi, Iltefat H

    2012-08-01

    Tristimulus colorimetry and diffuse reflectance spectroscopy (DRS) are white-light skin reflectance techniques used to measure the intensity of skin pigmentation. The tristimulus colorimeter is an instrument that measures a perceived color and the DRS instrument measures biological chromophores of the skin, including oxy- and deoxyhemoglobin, melanin and scattering. Data gathered from these tools can be used to understand morphological changes induced in skin chromophores due to conditions of the skin or their treatments. The purpose of this study was to evaluate the use of these two instruments in color measurements of acanthosis nigricans (AN) lesions. Eight patients with hyperinsulinemia and clinically diagnosable AN were seen monthly. Skin pigmentation was measured at three sites: the inner forearm, the medial aspect of the posterior neck, and anterior neck unaffected by AN. Of the three, measured tristimulus L*a*b* color parameters, the luminosity parameter L* was found to most reliably distinguish lesion from normally pigmented skin. The DRS instrument was able to characterize a lesion on the basis of the calculated melanin concentration, though melanin is a weak indicator of skin change and not a reliable measure to be used independently. Calculated oxyhemoglobin and deoxyhemoglobin concentrations were not found to be reliable indicators of AN. Tristimulus colorimetry may provide reliable methods for respectively quantifying and characterizing the objective color change in AN, while DRS may be useful in characterizing changes in skin melanin content associated with this skin condition.

  11. Feasibility for quantitative determination of deoxyribonucleic acid by using near-infrared diffuse reflectance spectroscopy.

    PubMed

    Yang, Yafei; Tu, Jiarun; Cai, Wensheng; Shao, Xueguang

    2012-09-15

    A method for quantitative determination of fish sperm deoxyribonucleic acid (fsDNA) in solutions was developed by using adsorption preconcentration and near-infrared diffuse reflectance spectroscopy (NIRDRS). A high capacity adsorbent of amino-modified silica particle (AMSP) was prepared for preconcentration of fsDNA in solutions. Under the optimized conditions, the adsorption rate can be above 90% within 3 min. After adsorbing the DNA onto the adsorbent, near-infrared (NIR) spectra in diffuse reflectance mode were measured and partial least squares (PLS) model was established for fast quantitative prediction. The results show that the correlation coefficient (R) between the predicted and the reference concentration is 0.9894 and the recoveries are in the range of 92.9-123.4% for the validation samples in the concentration range of 3.00-29.38 mg L(-1). Therefore, the feasibility for quantitative analysis of DNA in solutions by NIRDRS is proved. This may provide an alternative way for fast determination of DNA in solutions.

  12. Discrimination of Alicyclobacillus strains using nitrocellulose membrane filter and attenuated total reflectance fourier transform infrared spectroscopy.

    PubMed

    Wang, Jun; Yue, Tianli; Yuan, Yahong; Lu, Xiaonan; Shin, Joong-Han; Rasco, Barbara

    2011-03-01

    Alicyclobacillus spp. are thermoacidophilic, spore-forming bacteria, some of which cause spoilage in pasteurized and heat-treated apple juice products through the production of guaiacol. It would be helpful if a rapid method to detect and discriminate Alicyclobacillus strains was available. A simple and rapid sample preparation method using nitrocellulose membrane filter (NMF) and a single reflection horizontal attenuated total reflection (HATR) accessory with Fourier transform infrared (FT-IR) was developed here. Fourier transform infrared (FT-IR) spectroscopy was used and tested on 8 Alicyclobacillus strains (KF, WAC, NWN-13501, NWN-12697, NWN-12654, NWN-10682, 1016, 1101). A linear discriminant analysis (LDA) was established to discriminate Alicyclobacillus strains. The sample preparation method could successfully separated strains into different groups by principal component analysis (PCA). High identification accuracy (95%) was achieved with the LDA model. The method developed in the paper can be used to discriminate different Alicyclobacillus strains from each other making it possible to easily determine whether the strain of Alicyclobacillus present is associated with juice spoilage.

  13. Impact of one-layer assumption on diffuse reflectance spectroscopy of skin

    NASA Astrophysics Data System (ADS)

    Hennessy, Ricky; Markey, Mia K.; Tunnell, James W.

    2015-02-01

    Diffuse reflectance spectroscopy (DRS) can be used to noninvasively measure skin properties. To extract skin properties from DRS spectra, you need a model that relates the reflectance to the tissue properties. Most models are based on the assumption that skin is homogenous. In reality, skin is composed of multiple layers, and the homogeneity assumption can lead to errors. In this study, we analyze the errors caused by the homogeneity assumption. This is accomplished by creating realistic skin spectra using a computational model, then extracting properties from those spectra using a one-layer model. The extracted parameters are then compared to the parameters used to create the modeled spectra. We used a wavelength range of 400 to 750 nm and a source detector separation of 250 μm. Our results show that use of a one-layer skin model causes underestimation of hemoglobin concentration [Hb] and melanin concentration [mel]. Additionally, the magnitude of the error is dependent on epidermal thickness. The one-layer assumption also causes [Hb] and [mel] to be correlated. Oxygen saturation is overestimated when it is below 50% and underestimated when it is above 50%. We also found that the vessel radius factor used to account for pigment packaging is correlated with epidermal thickness.

  14. Glucose quantification in dried-down nanoliter samples using mid-infrared attenuated total reflection spectroscopy.

    PubMed

    Diessel, Edgar; Willmann, Stefan; Kamphaus, Peter; Kurte, Roland; Damm, Uwe; Heise, H Michael

    2004-04-01

    The aim of this study was to determine the feasibility of minimally invasive glucose concentration measurement of a body fluid within the physiologically important range below 100 nL with a number of samples such as interstitial fluid, plasma, or whole blood using mid-infrared spectroscopy, but starting with preliminary measurements on samples of simple aqueous glucose solutions. The Fourier transform infrared spectrometer was equipped with a Golden Gate single reflection diamond attenuated total reflection (ATR) accessory and a room-temperature pyroelectric detector. As the necessary detection limits can be achieved only for dried samples within the spectrometric conditions realized by a commercial instrument, the work focused on the optimization of such ATR measurements. We achieved quantification of samples with volumes as low as 7 nL between 10 and 600 mg/dL. The standard error of prediction (SEP) for the concentration range 10-100 mg/dL is 3.2 mg/dL with full interval data between 1180 and 940 cm(-1). The performance of the prediction is given by a coefficient of variation of prediction (CV(pred) ) of 6.2%. When all samples within the whole concentration range are included, the SEP increases to 20.2 mg/dL, and hence the CV(pred) to 10.6% due to a nonlinear signal dependence on glucose concentration. A detection limit for glucose of 0.7 ng with a signal-to-noise ratio of 10 was obtained.

  15. Pink berry grape (Vitis vinifera L.) characterization: Reflectance spectroscopy, HPLC and molecular markers.

    PubMed

    Rustioni, Laura; De Lorenzis, Gabriella; Hârţa, Monica; Failla, Osvaldo

    2016-01-01

    Color has a fundamental role for the qualitative evaluation and cultivar characterization of fruits. In grape, a normally functional pigment biosynthesis leads to the accumulation of a high quantity of anthocyanins. In this work, 28 Vitis vinifera L. cultivars accumulating low anthocyanins in berries were studied to characterize the biosynthetic dysfunctions in both a phenotypic and genotypic point of view. Reflectance spectroscopy, HPLC profiles and molecular markers related to VvMybA1 and VvMybA2 genes allowed a detailed description of the pigment-related characteristics of these cultivars. Data were consistent concerning the heterozygosity of the non-functional allele in both investigated genes, resulting in a low colored phenotype as described by reflectance. However, the variability in berry colour among our samples was not fully explained by MybA locus, probably due to specific interferences among the biosynthetic pathways, as suggested by the anthocyanin profile variations detected among our samples. The results presented in this work confirmed the importance of the genetic background: grapes accumulating high levels of cyanidin-3-O-glucosides (di-substituted anthocyanin) are generally originated by white cultivar retro-mutations and they seem to preserve the anomalies in the flavonoid hydroxylases enzymes which negatively affect the synthesis of tri-substituted anthocyanins. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

  16. Toward reliable retrieval of functional information of papillary dermis using spatially resolved diffuse reflectance spectroscopy

    PubMed Central

    Chen, Yu-Wen; Guo, Jun-Yen; Tzeng, Shih-Yu; Chou, Ting-Chun; Lin, Ming-Jen; Huang, Lynn Ling-Huei; Yang, Chao-Chun; Hsu, Chao-Kai; Tseng, Sheng-Hao

    2016-01-01

    Spatially resolved diffuse reflectance spectroscopy (SRDRS) has been employed to quantify tissue optical properties and its interrogation volume is majorly controlled by the source-to-detector separations (SDSs). To noninvasively quantify properties of dermis, a SRDRS setup that includes SDS shorter than 1 mm is required. It will be demonstrated in this study that Monte Carlo simulations employing the Henyey-Greenstein phase function cannot always precisely predict experimentally measured diffuse reflectance at such short SDSs, and we speculated this could be caused by the non-negligible backward light scattering at short SDSs that cannot be properly modeled by the Henyey-Greenstein phase function. To accurately recover the optical properties and functional information of dermis using SRDRS, we proposed the use of the modified two-layer (MTL) geometry. Monte Carlo simulations and phantom experiment results revealed that the MTL probing geometry was capable of faithfully recovering the optical properties of upper dermis. The capability of the MTL geometry in probing the upper dermis properties was further verified through a swine study, and it was found that the measurement results were reasonably linked to histological findings. Finally, the MTL probe was utilized to study psoriatic lesions. Our results showed that the MTL probe was sensitive to the physiological condition of tissue volumes within the papillary dermis and could be used in studying the physiology of psoriasis. PMID:26977361

  17. Near IR Scanning Angle Total Internal Reflection Raman Spectroscopy at Smooth Gold Films

    SciTech Connect

    McKee, Kristopher; Meyer, Matthew; Smith, Emily

    2012-04-13

    Total internal reflection (TIR) Raman and reflectivity spectra were collected for nonresonant analytes as a function of incident angle at sapphire or sapphire/smooth 50 nm gold interfaces using 785 nm excitation. For both interfaces, the Raman signal as a function of incident angle is well-modeled by the calculated interfacial mean square electric field (MSEF) relative to the incident field times the thickness of the layer being probed in the Raman measurement (D{sub RS}). The Raman scatter was reproducibly enhanced at the interface containing a gold film relative to the sapphire interface by a factor of 4.3–4.6 for aqueous pyridine or 2.2–3.7 for neat nitrobenzene, depending on the analyzed vibrational mode. The mechanism for the increased Raman signal is the enhanced MSEF at incident angles where propagating surface plasmons are excited in the metal film. The background from the TIR prism was reduced by 89–95% with the addition of the gold film, and the percent relative uncertainty in peak area was reduced from 15 to 1.7% for the 1347 cm–1 mode of nitrobenzene. Single monolayers of benzenethiol (S/N = 6.8) and 4-mercaptopyridine (S/N = 16.5) on gold films were measured by TIR Raman spectroscopy with 785 nm excitation (210 mW) without resonant enhancement in 1 min.

  18. Absorption to reflection transition in selective solar coatings.

    PubMed

    Olson, Kyle D; Talghader, Joseph J

    2012-07-02

    The optimum transition wavelength between high absorption and low emissivity for selective solar absorbers has been calculated in several prior treatises for an ideal system, where the emissivity is exactly zero in the infrared. However, no real coating can achieve such a low emissivity across the entire infrared with simultaneously high absorption in the visible. An emissivity of even a few percent radically changes the optimum wavelength separating the high and low absorption spectral bands. This behavior is described and calculated for AM0 and AM1.5 solar spectra with an infrared emissivity varying between 0 and 5%. With an emissivity of 5%, solar concentration of 10 times the AM1.5 spectrum the optimum transition wavelength is found to be 1.28 µm and have a 957K equilibrium temperature. To demonstrate typical absorptions in optimized solar selective coatings, a four-layer sputtered Mo and SiO₂ coating with absorption of 5% across the infrared is described experimentally and theoretically.

  19. Nondestructive inspection of organic films on sandblasted metals using diffuse reflectance infrared spectroscopy

    SciTech Connect

    Powell, G.L.; Cox, R.L.; Barber, T.E.; Neu, J.T.

    1996-07-08

    Diffuse reflectance infrared spectroscopy is a very useful tool for the determination of surface contamination and characterization of films in manufacturing applications. Spectral data from the surfaces of a host of practical materials may be obtained with sufficient insensitivity to characterize relatively thick films, such as paint, and the potential exists to detect very thin films, such as trace oil contamination on metals. The SOC 400 Surface Inspection Machine/InfraRed (SIMIR) has been developed as a nondestructive inspection tool to exploit this potential in practical situations. This SIMIR is a complete and ruggidized Fourier transform infrared spectrometer with a very efficient and robust barrel ellipse diffuse reflectance optical collection system and operating software system. The SIMIR weighs less than 8 Kg, occupies less than 14 L volume, and may be manipulated into any orientation during operation. The surface to be inspected is placed at the focal point of the SIMIR by manipulating the SIMIR or the surface. The SIMIR may or may not contact the surface being inspected. For flat or convex items, there are no size limits to items being inspected. For concave surfaces, the SIMIR geometry limits the surface to those having a radius of curvature greater than 0.2 m. For highly reflective metal surfaces, the SIMIR has a noise level approaching 1 {times} 10{sup {minus}4} absorbance units, which is sufficient for detecting nanometer thick organic film residues on metals. The use of this nondestructive inspection tool is demonstrated by the spatial mapping of organic stains on sand blasted metals in which organic stains such as silicone oils, mineral oils, and triglycerides are identified both qualitatively and quantitatively over the surface of the metal specimen.

  20. The importance of environmental conditions in reflectance spectroscopy of laboratory analogs for Mars surface materials

    NASA Technical Reports Server (NTRS)

    Bishop, J.; Murchie, S.; Pratt, S.; Mustard, J.; Pieters, C.

    1993-01-01

    Reflectance spectra are presented here for a variety of particulate, ferric-containing analogs to Martian soil (Fe(3+)-doped smectites and palagonites) to facilitate interpretation of remotely acquired spectra. The analog spectra were measured under differing environmental conditions to evaluate the influence of exposure history on water content and absorption features due to H2O in these samples. Each of these materials contains structural OH bonded to metal cations, adsorbed H2O, and bound H2O (either in a glass, structural site, or bound to a cation). Previous experiments involving a variety of Mars analogs have shown that the 3 micron H2O band in spectra of palagonites is more resistant to drying than the 3 micron H2O band in spectra of montmorillonites. Other experiments have shown that spectra of ferrihydrite and montmorillonites doped with ferric sulfate also contain sufficient bound H2O to retain a strong 3 micron band under dry conditions. Once the effects of the environment on bound water in clays, oxides, and salts are better understood, the hydration bands measured via reflectance spectroscopy can be used to gain information about the chemical composition and moisture content of real soil systems. Such information would be especially useful in interpreting observations of Mars where subtle spatial variations in the strengths of metal-OH and H2O absorptions have been observed in telescopic and ISM spectra. We measured bidirectional reflectance spectra of several Mars soil analogs under controlled environmental conditions to assess the effects of moisture content on the metal-OH and H2O absorptions. The samples analyzed include chemically altered montmorillonites, ferrihydrite. and palagonites from Hawaii and Iceland. Procedures for preparation of the cation-exchanged montmorillonites, ferric-salt doped montmorillonites, and ferric oxyhydroxides are described in detail elsewhere.

  1. Assessing Salinity in Cotton and Tomato Plants by Using Reflectance Spectroscopy

    NASA Astrophysics Data System (ADS)

    Goldshleger, Naftaly

    2016-04-01

    Irrigated lands in semi-arid and arid areas are subjected to salinization processes. An example of this phenomenon is the Jezreel Valley in northern Israel where soil salinity has increased over the years. The increase in soil salinity results in the deterioration of the soil structure and crops damage. In this experiment we quantified the relation between the chemical and spectral features of cotton and tomato plants and their mutual relationship to soil salinity. The experiment was carried out as part of ongoing research aiming to detect and monitor saline soils and vegetation by combining different remote sensing methods. The aim of this study was to use vegetation reflectance measurements to predict foliar Cl and Na concentration and assess salinity in the soil and in vegetation by their reflectance measurements. The model developed for determining concentrations of chlorine and sodium in tomato and cotton produced good results ( R2 = 0.92 for sodium and 0.85 for chlorine in tomato and R2 = 0.84 for sodium and 0.82 for chlorine in cotton). Lately, we extend the method to calculate vegetation salinity, by doing correlation between the reflectance slopes of the tested crops CL and Na from two research areas. The developed model produced a good results for all the data (R2=0.74) Our method can be implemented to assess vegetation salinity ahead of planting, and developed as a generic tool for broader use for agriculture in semi-arid regions. In our opinion these results show the possibility of monitoring for a threshold level of salinity in tomato and cotton leaves so remedial action can be taken in time to prevent crop damage. Our results strongly suggest that future imaging spectroscopy remote sensing measurements collected by airborne and satellite platforms could measure the salinity of soil and vegetation over larger areas. These results can be the first steps for generic a model which includes more vegetation for salinity measurements.

  2. Nanocrystalline diamond sensor targeted for selective CRP detection: an ATR-FTIR spectroscopy study.

    PubMed

    Andersson, Per Ola; Viberg, Pernilla; Forsberg, Pontus; Nikolajeff, Fredrik; Österlund, Lars; Karlsson, Mikael

    2016-05-01

    Protein immobilization on functionalized fluorine-terminated nanocrystalline (NCD) films was studied by attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy using an immobilization protocol developed to specifically bind C-reactive protein (CRP). Using an ATR-FTIR spectroscopy method employing a force-controlled anvil-type configuration, three critical steps of the ex situ CRP immobilization were analyzed. First, the NCD surface was passivated by deposition of a copolymer layer consisting of polyethylene oxide and polypropylene oxide. Second, a synthetic modified polypeptide binder with high affinity to CRP was covalently attached to the polymeric film. Third, CRP dissolved in aqueous buffer in concentrations of 10-20 μg/mL was added on the functionalized NCD surface. Both the amide I and II bands, due to the polypeptide binder and CRP, were clearly observed in ATR-FTIR spectra. CRP amide I bands were extracted from difference spectra and yielded bands that agreed well with the reported amide I band of free (non-bonded) CRP in solution. Thus, our results show that CRP retains its secondary structure when it is attached to the polypeptide binders. Compared to previous IR studies of CRP in solution, about 200 times lower concentration was applied in the present study. Graphical Abstract Direct non-destructive ATR-FTIR analysis of C-reactive protein (CRP) selectively bound to functionalized nanocrystalline diamond (NCD) sensor surface.

  3. Characterization of Ti{sub 1-x}Al{sub x}N coatings with selective IR reflectivity

    SciTech Connect

    Godinho, V.; Philippon, D.; Rojas, T.C.; Fernandez, A.; Novikova, N.N.; Yakovlev, V.A.; Vinogradov, E.A.

    2010-08-15

    Ti{sub 1-x}Al{sub x}N thin films were deposited by reactive magnetron sputtering. The obtained different stoichiometries give rise to different optical properties as the films change from metallic to dielectric. In this work the IR reflectivity of these coatings is investigated taking into account different application fields for IR selective Ti{sub 1-x}Al{sub x}N thin films. Low Al content coatings present high reflectivity, high absorptance and low thermal emittance. High Al compositions give raise to coatings with high absorptance and high thermal emittance. The composition of the coatings was evaluated combining electron energy loss spectroscopy (EELS) and energy dispersive spectroscopy. Scanning electron microscopy (SEM) revealed a columnar structure. Reflectance spectra for the visible and infrared spectral ranges were used to obtain the solar absorptance and thermal emittance values, used to calculate the equilibrium temperature of the coatings. The thermal stability in air from 300 to 600 C was also evaluated. (author)

  4. Historical perspective and modern applications of Attenuated Total Reflectance-Fourier Transform Infrared Spectroscopy (ATR-FTIR).

    PubMed

    Blum, Marc-Michael; John, Harald

    2012-01-01

    Vibrational spectroscopy has a long history as an important spectroscopic method in chemical and pharmaceutical analysis. Instrumentation for infrared (IR) spectroscopy was revolutionized by the introduction of Fourier Transform Infrared (FTIR) spectrometers. In addition, easier sampling combined with better sample-to-sample reproducibility and user-to-user spectral variation became available with attenuated total reflectance (ATR) probes and their application for in situ IR spectroscopy. These innovations allow many new applications in chemical and pharmaceutical analysis, such as the use of IR spectroscopy in Process Analytical Chemistry (PAC), the quantitation of drugs in complex matrix formulations, the analysis of protein binding and function and in combination with IR microscopy to the emergence of IR imaging technologies. The use of ATR-FTIR instruments in forensics and first response to 'white powder' incidents is also discussed. A short overview is given in this perspective article with the aim to renew and intensify interest in IR spectroscopy.

  5. VNIR reflectance spectroscopy of glassy igneous material with variable oxidation states

    NASA Astrophysics Data System (ADS)

    Carli, Cristian; Di Genova, Danilo; Roush, Ted L.; Ertel-Ingrisch, Werner; Capaccioni, Fabrizio; Dingwell, Donald B.

    2017-04-01

    Silicate glasses with igneous compositions may represent an abundant component of planetary surface material via effusive volcanism or impact cratering processes. Several planetary surfaces are mapped with hyper-spectrometers in the visible and near-infrared (VNIR). In this spectral range, crystal field (C.F.) absorptions are useful to discriminate iron-bearing silicate components. At the same time, in the VNIR reflectance spectroscopy iron bearing glasses may exhibit a C.F. absorption at ˜1.1 μm. A weak C.F. absorption is also present at ˜1.9 μm. These absorptions can be therefore diagnostic for glassy component and can also affect the C.F. absorptions of mafic minerals when mixed in the regolith. So far, few studies investigated the spectral properties of systematic glasses compositions and at different oxygen fucacity. For these reasons studying glassy materials, and their optical constants, represents an important effort to document and to interpret, spectral features of Solar System silicate crusts where glasses are present, but may be difficult to map. In previous work Carli et al. (2016) considered the composition of glassy igneous materials produced in Earth-like atmospheric conditions (i.e. oxidized conditions). Here, we expand on that effort by including glasses formed under more reducing condition. In this study, glasses were produced at -9.3 log fO2 and 1400 ˚ C for a duration of 4 h at the Department of Earth and Environmental Sciences at the University of Munich using a gas-mixing furnace. The major element composition, sample homogeneity, and the Fe3+/Fetot. ratio of run products were analytically determined. Moreover, Raman spectra of the same samples were also acquired. Afterwards, powders were produced with nine-grain size from 250-224 μm to 50-20 μm and measured in bidirectional reflectance at Spectroscopy LABoratory (IAPS-INAF, Rome). Reflectance spectra were acquired from 0.35 to 2.5 μm with a Field-Pro Spectrometer mounted on a

  6. Sensitive monitoring of photocarrier densities in the active layer of a photovoltaic device with time-resolved terahertz reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Yamashita, Genki; Matsubara, Eiichi; Nagai, Masaya; Kim, Changsu; Akiyama, Hidefumi; Kanemitsu, Yoshihiko; Ashida, Masaaki

    2017-02-01

    We demonstrate the sensitive measurement of photocarriers in an active layer of a GaAs-based photovoltaic device using time-resolved terahertz reflection spectroscopy. We found that the reflection dip caused by Fabry-Pérot interference is strongly affected by the carrier profile in the active layer of the p-i-n structure. The experimental results show that this method is suitable for quantitative evaluation of carrier dynamics in active layers of solar cells under operating conditions.

  7. In vivo skin absorption dynamics of topically applied pharmaceuticals monitored by fiber-optic diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Kim, Ki-Hong; Jheon, Sanghoon; Kim, Jong-Ki

    2007-03-01

    A simple non-invasive ultra-violet/visible (UV/vis) diffusive reflectance spectroscopy combined with fiber-optics was investigated to elicit the dynamics of skin penetration in vivo of a pharmaceutical, aminolevulinic acid polyethylene glycol cream (5-ALA-PEG cream). Temporal data of the reflectance, R( λ), were measured from a bare skin region and from a skin region treated with 5-ALA cream. The difference in apparent optical density [(ΔAOD) = Δ log[1/ R( λ)

  8. Applications of microstructured silicon wafers as internal reflection elements in attenuated total reflection Fourier transform infrared spectroscopy.

    PubMed

    Schumacher, Henrik; Künzelmann, Ulrich; Vasilev, Boris; Eichhorn, Klaus-Jochen; Bartha, Johann W

    2010-09-01

    A novel internal reflection element (IRE) for attenuated total reflection Fourier transform infrared (ATR-FT-IR) spectral acquisition is introduced and applied for several surface-sensitive measurements. It is based on microstructured double-side-polished (100) silicon wafers with v-shaped grooves of {111} facets on their backside. These facets of the so-called "microstructured single-reflection elements" (mSRE) are formed by a crystal-oriented anisotropic wet etching process within a conventional wafer structuring process. They are used to couple infrared radiation into and out of the IRE. In contrast to the application of the commonly used silicon multiple-reflection elements (MRE), the new elements provide single-reflection ATR measurements at the opposite wafer side by using simple reflection accessories without any special collimation. Due to the short light path, the spectral range covers the entire mid-infrared region with a high optical throughput, including the range of silicon lattice vibrations from 300 to 1500 cm(-1). In addition to typical ATR applications, i.e., the measurement of bulk liquids and soft materials, the new reflection elements can be effectively used and customer-specifically designed for in situ and ex situ investigations of aqueous solutions, thin films, and monolayers on Si. Examples presented in this article are in situ etching of native as well as thermal SiO(2) and characterization of polydimethylsiloxane (PDMS) films on Si under various measuring conditions.

  9. Photoinduced phase transition in tetrathiafulvalene- p -chloranil observed in femtosecond reflection spectroscopy

    NASA Astrophysics Data System (ADS)

    Okamoto, H.; Ishige, Y.; Tanaka, S.; Kishida, H.; Iwai, S.; Tokura, Y.

    2004-10-01

    Photoinduced transitions from ionic (I) to neutral (N) and neutral (N) to ionic (I) phases in an organic charge transfer (CT) complex, tetrathiafulvalene- p -chloranil (TTF-CA), were investigated by femtosecond pump-probe reflection spectroscopy. Transient reflectivity changes of the intramolecular transition band of TTF sensitive to the degree of CT between a donor molecule of TTF and an acceptor molecule of CA are measured as a function of excitation energy, excitation density, and temperature. By adopting the multilayer model for the analysis of the obtained transient reflectivity spectra, we have derived the time characteristics of amounts and spatial distributions of photoinduced N(I) states in the I(N) phase. The results reveal that the I to N(IN) transition induced by the resonant excitation of the CT band at 4K is composed of three processes; (1) formation of a confined one-dimensional (1D) N domain, that is, a sequence of D0A0 pairs, just after the photoexcitation, (2) multiplication of the 1D N domains to the semimacroscopic N states up to 20ps within the absorption depth of the excitation light, and (3) proceeding of the IN transition along the direction normal to the sample surface. At 77K near the NI transition temperature (Tc=81K) , the size of the 1D N domain initially produced is enlarged and its multiplication process is strongly enhanced. When the excitation energy is increased, the initial photoproduct is changed from the confined 1D N domain to the positively and negatively charged N states. The spatial size of the latter is considerably larger than that of the former, indicating that the introduction of charge carriers makes the neighboring I state strongly unstable. The dynamics of the photoinduced N to I(NI) transition has also been investigated. The 1D I domains are initially produced by lights, however, they decay within 20ps even if the density of the I domains is increased. The results demonstrate that there is a clear difference of the

  10. Near infrared reflectance spectroscopy for the fast identification of PVC-based films.

    PubMed

    Laasonen, M; Rantanen, J; Harmia-Pulkkinen, T; Michiels, E; Hiltunen, R; Räsänen, M; Vuorela, H

    2001-07-01

    Near infrared (NIR) reflectance spectroscopy was used to develop a non-destructive and rapid qualitative method for the analysis of plastic films used by the pharmaceutical industry for blistering. Three types of films were investigated: 250 microm PVC [poly(vinyl chloride)] films, 250 microm PVC films coated with 40 g m(-2) of PVDC [poly(vinylidene dichloride)] and 250 microm PVC films coated with 5 g m(-2) of TE (Thermoelast) and 90 g m(-2) of PVDC. Three analyses were carried out using different pre-treatment options and a PLS (partial least squares) algorithm. Each analysis was aimed at identifying one type of film and rejecting all types of false sample (different thickness, colour or layer). True and false samples from four plastics manufacturers were included in the calibration sets in order to obtain robust methods that were suitable regardless of the supplier. Specificity was demonstrated by testing validation sets against the methods. The tests showed 0% of type I (false negative identification) and 1% of type II errors (false positive identification) for the PVC method, 13 and 3%, respectively, for the PVC-PVDC method and no error for the PVC-TE-PVDC method. Type II errors, mostly due to the slight sensitivity of the methods to film thickness, are easily corrected by simple thickness measurements. This study demonstrates that NIR spectroscopy is an excellent tool for the identification of PVC-based films. The three methods can be used by the pharmaceutical industry or plastics manufacturers for the quality control of films used in blister packaging.

  11. Quantification of bovine immunoglobulin G using transmission and attenuated total reflectance infrared spectroscopy.

    PubMed

    Elsohaby, Ibrahim; McClure, J Trenton; Riley, Christopher B; Shaw, R Anthony; Keefe, Gregory P

    2016-01-01

    In this study, we evaluated and compared the performance of transmission and attenuated total reflectance (ATR) infrared (IR) spectroscopic methods (in combination with quantification algorithms previously developed using partial least squares regression) for the rapid measurement of bovine serum immunoglobulin G (IgG) concentration, and detection of failure of transfer of passive immunity (FTPI) in dairy calves. Serum samples (n = 200) were collected from Holstein calves 1-11 days of age. Serum IgG concentrations were measured by the reference method of radial immunodiffusion (RID) assay, transmission IR (TIR) and ATR-IR spectroscopy-based assays. The mean IgG concentration measured by RID was 17.22 g/L (SD ±9.60). The mean IgG concentrations predicted by TIR and ATR-IR spectroscopy methods were 15.60 g/L (SD ±8.15) and 15.94 g/L (SD ±8.66), respectively. RID IgG concentrations were positively correlated with IgG levels predicted by TIR (r = 0.94) and ATR-IR (r = 0.92). The correlation between 2 IR spectroscopic methods was 0.94. Using an IgG concentration <10 g/L as the cut-point for FTPI cases, the overall agreement between TIR and ATR-IR methods was 94%, with a corresponding kappa value of 0.84. The sensitivity, specificity, positive predictive value, negative predictive value, and accuracy for identifying FTPI by TIR were 0.87, 0.97, 0.91, 0.95, and 0.94, respectively. Corresponding values for ATR-IR were 0.87, 0.95, 0.86, 0.95, and 0.93, respectively. Both TIR and ATR-IR spectroscopic approaches can be used for rapid quantification of IgG level in neonatal bovine serum and for diagnosis of FTPI in dairy calves.

  12. [Testing of germination rate of hybrid rice seeds based on near-infrared reflectance spectroscopy].

    PubMed

    Li, Yi-nian; Jiang, Dan; Liu, Ying-ying; Ding, Wei-min; Ding, Qi-shuo; Zha, Liang-yu

    2014-06-01

    Germination rate of rice seeds was measured according to technical stipulation of germination testing for agricultural crop seeds at present. There existed many faults for this technical stipulation such as long experimental period, more costing and higher professional requirement. A rapid and non-invasive method was put forward to measure the germination rate of hybrid rice seeds based on near-infrared reflectance spectroscopy. Two varieties of hybrid rice seeds were aged artificially at temperature 45 degrees C and humidity 100% condition for 0, 24, 48, 72, 96, 120 and 144 h. Spectral data of 280 samples for 2 varieties of hybrid rice seeds with different aging time were acquired individually by near-infrared spectra analyzer. Spectral data of 280 samples for 2 varieties of hybrid rice seeds were randomly divided into calibration set (168 samples) and prediction set (112 samples). Gormination rate of rice seed with different aging time was tested. Regression model was established by using partial least squares (PLS). The effect of the different spectral bands on the accuracy of models was analyzed and the effect of the different spectral preprocessing methods on the accuracy of models was also compared. Optimal model was achieved under the whole bands and by using standardization and orthogonal signal correction (OSC) preprocessing algorithms with CM2000 software for spectral data of 2 varieties of hybrid rice seeds, the coefficient of determination of the calibration set (Rc) and that of the prediction set (Rp) were 0.965 and 0.931 individually, standard error of calibration set (SEC) and that of prediction set (SEP) were 1.929 and 2.899 respectively. Relative error between tested value and predicted value for prediction set of rice seeds is below 4.2%. The experimental results show that it is feasible that rice germination rate is detected rapidly and nondestructively by using the near-infrared spectroscopy analysis technology.

  13. Fiber optic reflectance spectroscopy and hyper-spectral image spectroscopy: two integrated techniques for the study of the Madonna dei Fusi

    NASA Astrophysics Data System (ADS)

    Casini, A.; Bacci, M.; Cucci, C.; Lotti, F.; Porcinai, S.; Picollo, M.; Radicati, B.; Poggesi, M.; Stefani, L.

    2005-06-01

    Reflectance spectroscopy supplies fundamental information for investigating art objects and diagnosing their state of conservation. Until recently, reflectance spectra could be measured only on samples taken from the art objects. Recent progresses in fiber optics reflectance spectroscopy (FORS) and image spectroscopy (IS) have made it possible, however, to perform non-invasive measurements. Moreover, the two techniques can supply data in large enough quantities as to make the use of sophisticated statistical methods significant for detecting variations due to ageing and degradation. FORS and IS are, in a sense, complementary techniques as the former provides information on single points, while the latter provides 2-D maps from which the reflectance spectrum of each pixel can be displayed. Both FORS and IS were applied in the case study on the Lansdowne version of the Madonna dei fusi (Madonna of the Yarnwinder). In particular, IS was realized by means of a hyper-spectral scanner recently assembled at the "Nello Carrara" Istituto di Fisica Applicata. The characteristics of the scanner are: 0.1 mm spatial sampling over a 1x1 m2 surface and ~1 nm spectral sampling in the wavelength range from 400 nm to 900 nm. The information provided by these two techniques was consistent with what supplied by the non-invasive techniques employed by the other teams participating in the case study, in particular as regards the pigments, the preparatory layer, the binding medium, and the previous restoration works.

  14. Field spectroscopy sampling strategies for improved measurement of Earth surface reflectance

    NASA Astrophysics Data System (ADS)

    Mac Arthur, A.; Alonso, L.; Malthus, T. J.; Moreno, J. F.

    2013-12-01

    Over the last two decades extensive networks of research sites have been established to measure the flux of carbon compounds and water vapour between the Earth's surface and the atmosphere using eddy covariance (EC) techniques. However, contributing Earth surface components cannot be determined and (as the ';footprints' are spatially constrained) these measurements cannot be extrapolated to regional cover using this technique. At many of these EC sites researchers have been integrating spectral measurements with EC and ancillary data to better understand light use efficiency and carbon dioxide flux. These spectroscopic measurements could also be used to assess contributing components and provide support for imaging spectroscopy, from airborne or satellite platforms, which can provide unconstrained spatial cover. Furthermore, there is an increasing interest in ';smart' database and information retrieval systems such as that proposed by EcoSIS and OPTIMISE to store, analyse, QA and merge spectral and biophysical measurements and provide information to end users. However, as Earth surfaces are spectrally heterogeneous and imaging and field spectrometers sample different spatial extents appropriate field sampling strategies require to be adopted. To sample Earth surfaces spectroscopists adopt either single; random; regular grid; transect; or 'swiping' point sampling strategies, although little comparative work has been carried out to determine the most appropriate approach; the work by Goetz (2012) is a limited exception. Mac Arthur et al (2012) demonstrated that, for two full wavelength (400 nm to 2,500 nm) field spectroradiometers, the measurement area sampled is defined by each spectroradiometer/fore optic system's directional response function (DRF) rather than the field-of-view (FOV) specified by instrument manufacturers. Mac Arthur et al (2012) also demonstrated that each reflecting element within the sampled area was not weighted equally in the integrated

  15. Total reflection infrared spectroscopy of water-ice and frozen aqueous NaCl solutions

    SciTech Connect

    Walker, Rachel L.; Searles, Keith; Willard, Jesse A.; Michelsen, Rebecca R. H.

    2013-12-28

    Liquid-like and liquid water at and near the surface of water-ice and frozen aqueous sodium chloride films were observed using attenuated total reflection infrared spectroscopy (ATR-IR). The concentration of NaCl ranged from 0.0001 to 0.01 M and the temperature varied from the melting point of water down to 256 K. The amount of liquid brine at the interface of the frozen films with the germanium ATR crystal increased with salt concentration and temperature. Experimental spectra are compared to reflection spectra calculated for a simplified morphology of a uniform liquid layer between the germanium crystal and the frozen film. This morphology allows for the amount of liquid observed in an experimental spectrum to be converted to the thickness of a homogenous layer with an equivalent amount of liquid. These equivalent thickness ranges from a nanometer for water-ice at 260 K to 170 nm for 0.01 M NaCl close to the melting point. The amounts of brine observed are over an order of magnitude less than the total liquid predicted by equilibrium thermodynamic models, implying that the vast majority of the liquid fraction of frozen solutions may be found in internal inclusions, grain boundaries, and the like. Thus, the amount of liquid and the solutes dissolved in them that are available to react with atmospheric gases on the surfaces of snow and ice are not well described by thermodynamic equilibrium models which assume the liquid phase is located entirely at the surface.

  16. Total reflection infrared spectroscopy of water-ice and frozen aqueous NaCl solutions

    NASA Astrophysics Data System (ADS)

    Walker, Rachel L.; Searles, Keith; Willard, Jesse A.; Michelsen, Rebecca R. H.

    2013-12-01

    Liquid-like and liquid water at and near the surface of water-ice and frozen aqueous sodium chloride films were observed using attenuated total reflection infrared spectroscopy (ATR-IR). The concentration of NaCl ranged from 0.0001 to 0.01 M and the temperature varied from the melting point of water down to 256 K. The amount of liquid brine at the interface of the frozen films with the germanium ATR crystal increased with salt concentration and temperature. Experimental spectra are compared to reflection spectra calculated for a simplified morphology of a uniform liquid layer between the germanium crystal and the frozen film. This morphology allows for the amount of liquid observed in an experimental spectrum to be converted to the thickness of a homogenous layer with an equivalent amount of liquid. These equivalent thickness ranges from a nanometer for water-ice at 260 K to 170 nm for 0.01 M NaCl close to the melting point. The amounts of brine observed are over an order of magnitude less than the total liquid predicted by equilibrium thermodynamic models, implying that the vast majority of the liquid fraction of frozen solutions may be found in internal inclusions, grain boundaries, and the like. Thus, the amount of liquid and the solutes dissolved in them that are available to react with atmospheric gases on the surfaces of snow and ice are not well described by thermodynamic equilibrium models which assume the liquid phase is located entirely at the surface.

  17. Reflection electron energy-loss spectroscopy and imaging for surface studies in transmission electron microscopes.

    PubMed

    Wang, Z L; Bentley, J

    1992-02-15

    A review is given on the techniques and applications of high-energy reflection electron energy-loss spectroscopy (REELS) and reflection electron microscopy (REM) for surface studies in scanning transmission electron microscopes (STEM) and conventional transmission electron microscopes (TEM). A diffraction method is introduced to identify a surface orientation in the geometry of REM. The surface dielectric response theory is presented and applied for studying alpha-alumina surfaces. Domains of the alpha-alumina (012) surface initially terminated with oxygen can be reduced by an intense electron beam to produce Al metal; the resistance to beam damage of surface domains initially terminated with Al+3 ions is attributed to the screening effect of adsorbed oxygen. Surface energy-loss near-edge structure (ELNES), extended energy-loss fine structure (EXELFS), and microanalysis using REELS are illustrated based on the studies of TiO2 and MgO. Effects of surface resonances (or channeling) on the REELS signal-to-background ratio are described. The REELS detection of a monolayer of oxygen adsorption on diamond (111) surfaces is reported. It is shown that phase contrast REM image content can be significantly increased with the use of a field emission gun (FEG). Phase contrast effects close to the core of a screw dislocation are discussed and the associated Fresnel fringes around a surface step are observed. Finally, an in situ REM experiment is described for studying atomic desorption and diffusion processes on alpha-alumina surfaces at temperatures of 1,300-1,400 degrees C.

  18. [Determination of protein and gossypol content in cotton kernel powder with near infrared reflectance spectroscopy].

    PubMed

    Qin, Li; Shen, Xiao-Jia; Chen, Jin-Hong; Zhu, Shui-Jin

    2010-03-01

    Near-infrared reflectance spectroscopy (NIRS) was used as a rapid and nondestructive method to determine the protein content and gossypol content in cotton kernel powder samples, using 49 upland cotton (Gossypium hirsutum L.) germplasms and 188 recombinant inbred lines (RILs). The cottonseed samples harvested from the upland cotton germplasms and RILs grown in different cotton growing regions in different years were analyzed chemically for protein and gossypol contents, as well as scanned in the reflectance mode of a scanning monochromator. Using ISI software for scanning and data analysis, protein and gossypol calibration equations were obtained with a standard normal variate + detrending scatter correction and a 2, 4, 4, 1 math treatment and modified partial least square (MPLS) as the regression method. The protein content calibration results revealed that the multiple correlation coefficients (RSQ) and statistic 1--variance ratio (1-VR) for the determination of protein content in cottonseed kernels were 0.933 and 0.929, respectively, and its standard error of calibration (SEC) and standard error of cross validation (SECV) were 0.623 and 0.638, respectively. As the calibration equations were judged by the calibration RSQ (or 1-VR) and SEC (or SECV), the results indicated that NIRS is comparable to chemical methods in both accuracy and prediction and is reliable in the determination of protein content in cottonseed kernels. However, the RSQ, SEC, 1-VR and SECV for gossypol content determination of NIRS were 0.836, 0.811, 0.074 and 0.079, respectively. Although it was weaker than that of protein content, the NIRS method is still good enough for the determination and prediction of the gossypol content in cottonseed kernels. Therefore, NIRS models were successfully developed for protein content and gossypol content analysis of cotton kernel powder sample in the present study and they could be introduced into the cotton germplasm evaluation and breeding program for

  19. A portable device for detecting fruit quality by diffuse reflectance Vis/NIR spectroscopy

    NASA Astrophysics Data System (ADS)

    Sun, Hongwei; Peng, Yankun; Li, Peng; Wang, Wenxiu

    2017-05-01

    Soluble solid content (SSC) is a major quality parameter to fruit, which has influence on its flavor or texture. Some researches on the on-line non-invasion detection of fruit quality were published. However, consumers desire portable devices currently. This study aimed to develop a portable device for accurate, real-time and nondestructive determination of quality factors of fruit based on diffuse reflectance Vis/NIR spectroscopy (520-950 nm). The hardware of the device consisted of four units: light source unit, spectral acquisition unit, central processing unit, display unit. Halogen lamp was chosen as light source. When working, its hand-held probe was in contact with the surface of fruit samples thus forming dark environment to shield the interferential light outside. Diffuse reflectance light was collected and measured by spectrometer (USB4000). ARM (Advanced RISC Machines), as central processing unit, controlled all parts in device and analyzed spectral data. Liquid Crystal Display (LCD) touch screen was used to interface with users. To validate its reliability and stability, 63 apples were tested in experiment, 47 of which were chosen as calibration set, while others as prediction set. Their SSC reference values were measured by refractometer. At the same time, samples' spectral data acquired by portable device were processed by standard normalized variables (SNV) and Savitzky-Golay filter (S-G) to eliminate the spectra noise. Then partial least squares regression (PLSR) was applied to build prediction models, and the best predictions results was achieved with correlation coefficient (r) of 0.855 and standard error of 0.6033° Brix. The results demonstrated that this device was feasible to quantitatively analyze soluble solid content of apple.

  20. Monitoring longitudinal changes in irradiated head and neck cancer xenografts using diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Vishwanath, Karthik; Jiang, Shudong; Gunn, Jason R.; Marra, Kayla; Andreozzi, Jacqueline M.; Pogue, Brian W.

    2016-02-01

    Radiation therapy is often used as the preferred clinical treatment for control of localized head and neck cancer. However, during the course of treatment (6-8 weeks), feedback about functional and/or physiological changes within impacted tissue are not obtained, given the onerous financial and/or logistical burdens of scheduling MRI, PET or CT scans. Diffuse optical sensing is well suited to address this problem since the instrumentation can be made low-cost and portable while still being able to non-invasively provide information about vascular oxygenation in vivo. Here we report results from studies that employed an optical fiber-based portable diffuse reflectance spectroscopy (DRS) system to longitudinally monitor changes in tumor vasculature within two head and neck cancer cell lines (SCC-15 and FaDu) xenografted in the flanks of nude mice, in two separate experiments. Once the tumor volumes were 100mm3, 67% of animals received localized (electron beam) radiation therapy in five fractions (8Gy/day, for 5 days) while 33% of the animals served as controls. DRS measurements were obtained from each animal on each day of treatment and then for two weeks post-treatment. Reflectance spectra were parametrized to extract total hemoglobin concentration and blood oxygen-saturation and the resulting time-trends of optical parameters appear to be dissimilar for the two cell-lines. These findings are also compared to previous animal experiments (using the FaDu line) that were irradiated using a photon beam radiotherapy protocol. These results and implications for the use of fiber-based DRS measurements made at local (irradiated) tumor site as a basis for identifying early radiotherapy-response are presented and discussed.

  1. Enhanced single seed trait predictions in soybean (Glycine max) and robust calibration model transfer with near infrared reflectance spectroscopy

    USDA-ARS?s Scientific Manuscript database

    Single seed near infrared reflectance (NIR) spectroscopy predicts soybean (Glycine max) seed quality traits of moisture, oil, and protein. We tested the accuracy of transferring calibrations between different single seed NIR analyzers of the same design by collecting NIR spectra and analytical trait...

  2. Diffuse-Reflectance Fourier-Transform Mid-Infrared Spectroscopy as a Method of Characterizing Changes in Soil Organic Matter

    USDA-ARS?s Scientific Manuscript database

    Diffuse-Reflectance Fourier-Transform Mid-Infrared Spectroscopy (FTIR) can be used quickly and non destructively to identify and quantify the presence of important organic functional groups in environmental samples. However, soils contain myriad organic and inorganic components that absorb in the M...

  3. Quantification of betaglucans, lipid and protein contents in whole oat groats (Avena sativa L.) using near infrared reflectance spectroscopy

    USDA-ARS?s Scientific Manuscript database

    Whole oat has been described as an important healthy food for humans due to its beneficial nutritional components. Near infrared reflectance spectroscopy (NIRS) is a powerful, fast, accurate and non-destructive analytical tool that can be substituted for some traditional chemical analysis. A total o...

  4. Diffuse-reflectance fourier-transform mid-infrared spectroscopy as a method of characterizing changes in soil organic matter

    USDA-ARS?s Scientific Manuscript database

    Diffuse-Reflectance Fourier-Transform Mid-Infrared Spectroscopy (MidIR) can identify the presence of important organic functional groups in soil organic matter (SOM). Soils contain myriad organic and inorganic components that absorb in the MidIR so spectral interpretation needs to be validated in or...

  5. Extracting Complex Refractive Index from Polycrystalline Glucose with Self-Referenced Method for Terahertz Time-Domain Reflection Spectroscopy.

    PubMed

    Zhang, Yu; Zhang, Lin; Sun, Ping; He, Yingfeng; Zou, Yun; Deng, Yuqiang

    2016-07-01

    A self-referenced method for extracting the complex refractive index of material was proposed. The method utilized signals reflected from the front and rear surfaces of a slice sample as reference and sample signals, respectively. Before using the self-referenced method, a hybrid filtering technique for eliminating systematic and random noises of time-domain terahertz reflection spectroscopy was used. A terahertz reflection spectrum of crystalline glucose was measured and three feature absorption peaks were obtained from 0.2 to 2.0 THz. We suggest that intermolecular vibrational modes may contribute to the observed absorption spectra in the THz frequency range.

  6. In-situ measurement of epithelial tissue optical properties: Development and implementation of diffuse reflectance spectroscopy techniques

    NASA Astrophysics Data System (ADS)

    Wang, Quanzeng

    Cancer is a severe threat to human health. Early detection is considered the best way to increase the chance for survival. While the traditional cancer detection method, biopsy, is invasive, noninvasive optical diagnostic techniques are revolutionizing the way that cancer is diagnosed. Reflectance spectroscopy is one of these optical spectroscopy techniques showing promise as a diagnostic tool for pre-cancer detection. When a neoplasia occurs in tissue, morphologic and biochemical changes happen in the tissue, which in turn results in the change of optical properties and reflectance spectroscopy. Therefore, a pre-cancer can be detected by extracting optical properties from reflectance spectroscopy. This dissertation described the construction of a fiberoptic based reflectance system and the development of a series of modeling studies. This research is aimed at establishing an improved understanding of the optical properties of mucosal tissues by analyzing reflectance signals at different wavelengths. The ultimate goal is to reveal the potential of reflectance-based optical diagnosis of pre-cancer. The research is detailed in Chapter 3 through Chapter 5. Although related with each other, each chapter was designed to become a journal paper ultimately. In Chapter 3, a multi-wavelength, fiberoptic system was constructed, evaluated and implemented to determine internal tissue optical properties at ultraviolet A and visible wavelengths. A condensed Monte Carlo model was deployed to simulate light-tissue interaction and generate spatially distributed reflectance data. These data were used to train an inverse neural network model to extract tissue optical properties from reflectance. Optical properties of porcine mucosal and liver tissues were finally measured. In Chapter 4, the condensed Monte Carlo method was extended so that it can rapidly simulate reflectance from a single illumination-detection fiber thus enabling the calculation of large data sets. The model was

  7. Improving the prediction of arsenic contents in agricultural soils by combining the reflectance spectroscopy of soils and rice plants

    NASA Astrophysics Data System (ADS)

    Shi, Tiezhu; Wang, Junjie; Chen, Yiyun; Wu, Guofeng

    2016-10-01

    Visible and near-infrared reflectance spectroscopy provides a beneficial tool for investigating soil heavy metal contamination. This study aimed to investigate mechanisms of soil arsenic prediction using laboratory based soil and leaf spectra, compare the prediction of arsenic content using soil spectra with that using rice plant spectra, and determine whether the combination of both could improve the prediction of soil arsenic content. A total of 100 samples were collected and the reflectance spectra of soils and rice plants were measured using a FieldSpec3 portable spectroradiometer (350-2500 nm). After eliminating spectral outliers, the reflectance spectra were divided into calibration (n = 62) and validation (n = 32) data sets using the Kennard-Stone algorithm. Genetic algorithm (GA) was used to select useful spectral variables for soil arsenic prediction. Thereafter, the GA-selected spectral variables of the soil and leaf spectra were individually and jointly employed to calibrate the partial least squares regression (PLSR) models using the calibration data set. The regression models were validated and compared using independent validation data set. Furthermore, the correlation coefficients of soil arsenic against soil organic matter, leaf arsenic and leaf chlorophyll were calculated, and the important wavelengths for PLSR modeling were extracted. Results showed that arsenic prediction using the leaf spectra (coefficient of determination in validation, Rv2 = 0.54; root mean square error in validation, RMSEv = 12.99 mg kg-1; and residual prediction deviation in validation, RPDv = 1.35) was slightly better than using the soil spectra (Rv2 = 0.42, RMSEv = 13.35 mg kg-1, and RPDv = 1.31). However, results also showed that the combinational use of soil and leaf spectra resulted in higher arsenic prediction (Rv2 = 0.63, RMSEv = 11.94 mg kg-1, RPDv = 1.47) compared with either soil or leaf spectra alone. Soil spectral bands near 480, 600, 670, 810, 1980, 2050 and

  8. Attenuated total reflectance-FT-IR spectroscopy for gunshot residue analysis: potential for ammunition determination.

    PubMed

    Bueno, Justin; Sikirzhytski, Vitali; Lednev, Igor K

    2013-08-06

    The ability to link a suspect to a particular shooting incident is a principal task for many forensic investigators. Here, we attempt to achieve this goal by analysis of gunshot residue (GSR) through the use of attenuated total reflectance (ATR) Fourier transform infrared spectroscopy (FT-IR) combined with statistical analysis. The firearm discharge process is analogous to a complex chemical process. Therefore, the products of this process (GSR) will vary based upon numerous factors, including the specific combination of the firearm and ammunition which was discharged. Differentiation of FT-IR data, collected from GSR particles originating from three different firearm-ammunition combinations (0.38 in., 0.40 in., and 9 mm calibers), was achieved using projection to latent structures discriminant analysis (PLS-DA). The technique was cross (leave-one-out), both internally and externally, validated. External validation was achieved via assignment (caliber identification) of unknown FT-IR spectra from unknown GSR particles. The results demonstrate great potential for ATR-FT-IR spectroscopic analysis of GSR for forensic purposes.

  9. Phase transitions of amorphous solid acetone in confined geometry investigated by reflection absorption infrared spectroscopy.

    PubMed

    Shin, Sunghwan; Kang, Hani; Kim, Jun Soo; Kang, Heon

    2014-11-26

    We investigated the phase transformations of amorphous solid acetone under confined geometry by preparing acetone films trapped in amorphous solid water (ASW) or CCl4. Reflection absorption infrared spectroscopy (RAIRS) and temperature-programmed desorption (TPD) were used to monitor the phase changes of the acetone sample with increasing temperature. An acetone film trapped in ASW shows an abrupt change in the RAIRS features of the acetone vibrational bands during heating from 80 to 100 K, which indicates the transformation of amorphous solid acetone to a molecularly aligned crystalline phase. Further heating of the sample to 140 K produces an isotropic solid phase, and eventually a fluid phase near 157 K, at which the acetone sample is probably trapped in a pressurized, superheated condition inside the ASW matrix. Inside a CCl4 matrix, amorphous solid acetone crystallizes into a different, isotropic structure at ca. 90 K. We propose that the molecularly aligned crystalline phase formed in ASW is created by heterogeneous nucleation at the acetone-water interface, with resultant crystal growth, whereas the isotropic crystalline phase in CCl4 is formed by homogeneous crystal growth starting from the bulk region of the acetone sample.

  10. Quantum state-resolved gas/surface reaction dynamics probed by reflection absorption infrared spectroscopy.

    PubMed

    Chen, Li; Ueta, Hirokazu; Bisson, Régis; Beck, Rainer D

    2013-05-01

    We report the design and characterization of a new molecular-beam/surface-science apparatus for quantum state-resolved studies of gas/surface reaction dynamics combining optical state-specific reactant preparation in a molecular beam by rapid adiabatic passage with detection of surface-bound reaction products by reflection absorption infrared spectroscopy (RAIRS). RAIRS is a non-invasive infrared spectroscopic detection technique that enables online monitoring of the buildup of reaction products on the target surface during reactant deposition by a molecular beam. The product uptake rate obtained by calibrated RAIRS detection yields the coverage dependent state-resolved reaction probability S(θ). Furthermore, the infrared absorption spectra of the adsorbed products obtained by the RAIRS technique provide structural information, which help to identify nascent reaction products, investigate reaction pathways, and determine branching ratios for different pathways of a chemisorption reaction. Measurements of the dissociative chemisorption of methane on Pt(111) with this new apparatus are presented to illustrate the utility of RAIRS detection for highly detailed studies of chemical reactions at the gas/surface interface.

  11. Optical characterization of thin nickel films on polymer substrates using reflectance difference spectroscopy

    SciTech Connect

    Rinnerbauer, V.; Schmidegg, K.; Hohage, M.; Sun, L. D.; Flores-Camacho, J. M.; Zeppenfeld, P.

    2009-06-15

    We have used reflectance difference spectroscopy (RDS) and its extension, azimuth-dependent RDS (ADRDS), to study the properties of sputtered and evaporated nickel films on biaxially oriented poly(ethylene terephtalate) (PET) films in a roll to roll web-coating process. From the full set of ADRDS spectra we extract and analyze both the intrinsic RDS spectra and the azimuthal orientation of the effective optical anisotropy of the samples. From the latter, contributions to the RDS spectra arising from the nickel layer and the PET substrate with different orientations of the optical eigenaxes can be inferred. We find an attenuation of the characteristic RDS signal of the PET substrate with increasing nickel film thickness which is in good agreement with the theoretical prediction. For film thicknesses above 20 nm another contribution to the RDS signal attributed to the optical anisotropy of the deposited nickel layers can be observed. Its strength depends on the deposition method, and is considerably larger for evaporated films than for sputtered ones. With increasing nickel film thickness, the azimuthal orientation of the sample anisotropy changes from the initial value of the PET substrate by about 20 deg.toward the machine direction of the foil. We demonstrate that RDS is also a valuable tool for inline monitoring in the roll to roll process, as the attenuation of the RDS signal, under proper consideration of the orientation of the effective anisotropy, is a function of the film thickness and characteristic for the deposited material.

  12. Determination of non-starch polysaccharides in cereal grains with near-infared reflectance spectroscopy.

    PubMed

    Blakeney, Anthony B; Flinn, Peter C

    2005-06-01

    Cereal grains contain variable amounts of non-starch polysaccharides, such as arabinoxylans and (1-->3),(1-->4)-beta-glucans (beta-glucans), which are associated with their cell walls. The type and composition of these polysaccharides is of increasing interest in both human and animal nutrition. Reference analysis for these polysaccharides requires the use both enzymic and monosaccharide methods. To evaluate fully the non-starch polysaccharides present in grains, some analysts further distinguish between the soluble and insoluble fractions of these components. Near-infrared reflectance (NIR) spectroscopy provides fast, inexpensive analysis. It is, however, a comparative technique that relies on multivariate calibration of sample spectra and accurate reference analysis. It has the potential to be exploited as a rapid analytical method for nutritionally important polysaccharides. The calibration statistics for arabinoxylans and beta-glucans obtained in this study suggest that NIR can be used in plant breeding, nutritional and product studies to obtain simple and rapid estimates of non-starch polysaccharides. The occurrence of wheats with high cell wall contents together with barleys with high beta-glucan contents is well known. However, to date, this genetic variation has not been extensively exploited for the production of grains for use as human food ingredients.

  13. Detection of citrus Huanglongbing by Fourier transform infrared-attenuated total reflection spectroscopy.

    PubMed

    Hawkins, Samantha A; Park, Bosoon; Poole, Gavin H; Gottwald, Timothy; Windham, William R; Lawrence, Kurt C

    2010-01-01

    Citrus Huanglongbing (HLB, also known as citrus greening disease) was discovered in Florida in 2005 and is spreading rapidly amongst the citrus growing regions of the state. Detection via visual symptoms of the disease is not a long-term viable option. New techniques are being developed to test for the disease in its earlier presymptomatic stages. Fourier transform infrared-attenuated total reflection (FT-IR-ATR) spectroscopy is a candidate for rapid, inexpensive, early detection of the disease. The mid-infrared region of the spectrum reveals dramatic changes that take place in the infected leaves when compared to healthy non-infected leaves. The carbohydrates that give rise to peaks in the 900-1180 cm(-1) range are reliable in distinguishing leaves from infected plants versus non-infected plants. A model based on chemometrics was developed using the spectra from 179 plants of known disease status. This model then correctly predicted the status of >95% of the plants tested.

  14. Attenuated Total Internal Reflectance Infrared Spectroscopy (ATR-FTIR): A Quantitative Approach for Kidney Stone Analysis

    PubMed Central

    Gulley-Stahl, Heather J.; Haas, Jennifer A.; Schmidt, Katherine A.; Evan, Andrew P.; Sommer, André J.

    2011-01-01

    The impact of kidney stone disease is significant worldwide, yet methods for quantifying stone components remain limited. A new approach requiring minimal sample preparation for the quantitative analysis of kidney stone components has been investigated utilizing attenuated total internal reflectance infrared spectroscopy (ATR-FTIR). Calcium oxalate monohydrate (COM) and hydroxylapatite (HAP), two of the most common constituents of urinary stones, were used for quantitative analysis. Calibration curves were constructed using integrated band intensities of four infrared absorptions versus concentration (weight %). The correlation coefficients of the calibration curves range from 0.997 to 0.93. The limits of detection range from 0.07 ± 0.02% COM/HAP where COM is the analyte and HAP the matrix to 0.26 ± 0.07% HAP/COM where HAP is the analyte and COM the matrix. This study shows that linear calibration curves can be generated for the quantitative analysis of stone mixtures provided the system is well understood especially with respect to particle size. PMID:19589213

  15. Evaluation of a multi-layer diffuse reflectance spectroscopy system using optical phantoms

    NASA Astrophysics Data System (ADS)

    Fredriksson, Ingemar; Saager, Rolf B.; Durkin, Anthony J.; Strömberg, Tomas

    2017-03-01

    A fiber probe-based device for assessing microcirculatory parameters, especially red blood cell (RBC) tissue fraction, their oxygen saturation and speed resolved perfusion, has been evaluated using state-of-the-art multi-layer tissue simulating phantoms. The device comprises both diffuse reflectance spectroscopy (DRS) at two source-detector separations (0.4 and 1.2 mm) and laser Doppler flowmetry (LDF) and use an inverse Monte Carlo method for identifying the parameters of a multi-layered tissue model. First, model parameters affecting scattering, absorption and geometrical parameters are fitted to measured DRS spectra, then speed parameters are fitted to LDF spectra. In this paper, the accuracy of the spectral parameters is evaluated. The measured spectral shapes at the two source-detector separations were in good agreement with forward calculated spectral shapes. In conclusion, the multi-layer skin model based on spectral features of the included chromophores, can reliably estimate the tissue fraction of RBC, its oxygen saturation and the reduced scattering coefficient spectrum of the tissue. Furthermore, it was concluded that some freedom in the relative intensity difference between the two DRS channels is necessary in order to compensate for non-modeled surface structure effects.

  16. [Differential Reflectance Spectroscopy for In-Situ Monitoring of Organic Thin Films Growth in Vacuum Environment].

    PubMed

    Yao, Yao; Hu, Chun-guang; Xu, Zhen-yuan; Zhang, Lei; Fu, Xing; Hu, Xiao-tang

    2015-05-01

    For realizing the real-time monitoring of organic thin film preparation process in vacuum environment, the present paper proposes a high precision measurement approach based on differential reflectance spectroscopy (DRS). An optical system was constructed with off the shelf optical components, such as off-axis parabolic mirror, optical flat and optical fiber. A differential algorithm was employed to analyze the spectral signals. Based on the homebuilt setup, instability induced by variation of temperature was investigated. It was concluded that with the good control of temperature and air flow, the measurement repeatability of this system is better than 2 per thousand for a long-term period. Furthermore, an initial stage of organic thin film growth of pentacene molecules on the surface of Au was studied. As compared with the data of film thickness gauge and atomic force microscope, DR spectra accurately recorded the fine optical evolution with sub-monolayer resolution, which is related to the growth of the thin film. As a result, the DR optical system exhibits characteristics of broad spectrum (range from 300 to 820 nm), high stability (repeatability better than 2X 10(-3)), and high precision (sub-monolayer resolution) after efforts were done to decrease the influences on the spectral quality produced by misalignments of the optical components, the defects of the optics, and the disturbances of the environmental conditions. It is indicated that the proposed DR method is suitable for real-time online monitoring of thin film growth with high precision.

  17. Rapid evaluation of the quality of chestnuts using near-infrared reflectance spectroscopy.

    PubMed

    Hu, Jiaqi; Ma, Xiaochen; Liu, Lingling; Wu, Yanwen; Ouyang, Jie

    2017-09-15

    Near-infrared (NIR) diffuse reflectance spectroscopy was used to evaluate the quality of fresh chestnuts, which can be affected by mildew, water, and levels of water-soluble sugars. The NIR spectra were determined and then modeling was performed including principal component analysis - discriminant analysis (PCA-DA), soft independent modeling of class analogy (SIMCA), linear discriminant analysis (LDA), and partial least squares (PLS) methods. LDA model was better than PCA-DA model for the discrimination of normal and mildewed chestnuts, and the accuracy rates of calibration and validation were 100% and 96.37%, respectively. Normal and mildewed chestnuts were easily distinguished by the SIMCA classification and showed only 4.7% overlap. A PLS model was established to determine the water and water-soluble sugars in chestnuts. The R(2) of calibration and validation were all higher than 0.9, while the root mean square errors (RMSE) were all lower than 0.05, indicating that the established models were successful. Copyright © 2017 Elsevier Ltd. All rights reserved.

  18. Quantitative orientation measurements in thin lipid films by attenuated total reflection infrared spectroscopy.

    PubMed Central

    Picard, F; Buffeteau, T; Desbat, B; Auger, M; Pézolet, M

    1999-01-01

    Quantitative orientation measurements by attenuated total reflectance (ATR) infrared spectroscopy require the accurate knowledge of the dichroic ratio and of the mean-square electric fields along the three axes of the ATR crystal. In this paper, polarized ATR spectra of single supported bilayers of the phospholipid dimyristoylphosphatidic acid covered by either air or water have been recorded and the dichroic ratio of the bands due to the methylene stretching vibrations has been calculated. The mean-square electric field amplitudes were calculated using three formalisms, namely the Harrick thin film approximation, the two-phase approximation, and the thickness- and absorption-dependent one. The results show that for dry bilayers, the acyl chain tilt angle varies with the formalism used, while no significant variations are observed for the hydrated bilayers. To test the validity of the different formalisms, s- and p-polarized ATR spectra of a 40-A lipid layer were simulated for different acyl chain tilt angles. The results show that the thickness- and absorption-dependent formalism using the mean values of the electric fields over the film thickness gives the most accurate values of acyl chain tilt angle in dry lipid films. However, for lipid monolayers or bilayers, the tilt angle can be determined with an acceptable accuracy using the Harrick thin film approximation. Finally, this study shows clearly that the uncertainty on the determination of the tilt angle comes mostly from the experimental error on the dichroic ratio and from the knowledge of the refractive index. PMID:9876167

  19. Characterization of early stage cartilage degradation using diffuse reflectance near infrared spectroscopy

    NASA Astrophysics Data System (ADS)

    Brown, C. P.; Jayadev, C.; Glyn-Jones, S.; Carr, A. J.; Murray, D. W.; Price, A. J.; Gill, H. S.

    2011-04-01

    Interest in localized and early stage treatment technologies for joint conditions such as osteoarthritis is growing rapidly. It has therefore become important to develop objective measures capable of characterizing the earliest (non-visible) changes associated with degeneration to aid treatment procedures. In addition to assessing tissue before treatment, it is further important to develop an effective, non-destructive means of monitoring post-treatment tissue healing, and of providing the high-quality data needed for trials of developing treatment methods. To investigate its ability to detect the early stages of degeneration in cartilage-on-bone, diffuse reflectance near infrared spectroscopy was applied to normal and osteoarthritic joints. A discriminating function was developed to relate absorbance peaks of interest and track degradation around focal osteoarthritic defects. The function could distinguish between normal and degraded tissue (100% separation of normal tissue from that within 25 mm of a defect) and between different stages of osteoarthritic progression (p < 0.05). This technique allows simple, practical and non-destructive assessment of component-level properties over the full depth of the tissue. It has the potential to increase our understanding of the underlying etiologic and pathogenic processes in early stage degeneration, to assist classification and the development of new treatment methods.

  20. Detection of canine skin and subcutaneous tumors by visible and near-infrared diffuse reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Cugmas, Blaž; Plavec, Tanja; Bregar, Maksimilijan; Naglič, Peter; Pernuš, Franjo; Likar, Boštjan; Bürmen, Miran

    2015-03-01

    Cancer is the main cause of canine morbidity and mortality. The existing evaluation of tumors requires an experienced veterinarian and usually includes invasive procedures (e.g., fine-needle aspiration) that can be unpleasant for the dog and the owner. We investigate visible and near-infrared diffuse reflectance spectroscopy (DRS) as a noninvasive optical technique for evaluation and detection of canine skin and subcutaneous tumors ex vivo and in vivo. The optical properties of tumors and skin were calculated in a spectrally constrained manner, using a lookup table-based inverse model. The obtained optical properties were analyzed and compared among different tumor groups. The calculated parameters of the absorption and reduced scattering coefficients were subsequently used for detection of malignant skin and subcutaneous tumors. The detection sensitivity and specificity of malignant tumors ex vivo were 90.0% and 73.5%, respectively, while corresponding detection sensitivity and specificity of malignant tumors in vivo were 88.4% and 54.6%, respectively. The obtained results show that the DRS is a promising noninvasive optical technique for detection and classification of malignant and benign canine skin and subcutaneous tumors. The method should be further investigated on tumors with common origin.

  1. Simultaneous Determination of Amiloride and Hydrochlorothiazide in a Compound Tablet by Diffuse Reflectance Spectroscopy and Chemometrics

    NASA Astrophysics Data System (ADS)

    Tang, J.; Li, X.; Feng, Y.; Liang, B.

    2016-09-01

    This paper studies the simultaneous determination of amiloride hydrochloride (AMH) and hydrochlorothiazide (HCTZ) in amiloride hydrochloride tablets by ultraviolet-visible-shortwave near-infrared diffuse reflectance spectroscopy (UV-Vis-swNIR DRS) and chemometrics. Quantitative models for the two components were established by partial least squares (PLS) and support vector regression (SVR), respectively. For the PLS models of AMH and HCTZ, the determination coefficient R2 of the calibration set was 0.9503 and 0.9538, and the coefficient R2 of the prediction set was 0.8983 and 0.9260, respectively. The root mean square error of the calibration set (RMSEC) was 0.8 mg and 8.1 mg, while the root mean square error of the prediction set (RMSEP) was 1.0 mg and 8.7 mg, respectively. For the SVR models of AMH and HCTZ, the R2 of the calibration set was 0.9668 and 0.9609; the R2 of the prediction set was 0.9145 and 0.9446, respectively. The RMSEC was 0.7 and 7.5 mg, and the RMSEP was 0.9 and 8.9 mg, respectively. The results show that SVR modeling has a satisfactory prediction effect. The proposed method based on UV-vis-swNIR and chemometrics is efficient, nondestructive, and expected to be used for online quality monitoring in the production of drugs.

  2. Non-invasive detection of periodontal disease using diffuse reflectance spectroscopy: a clinical study

    NASA Astrophysics Data System (ADS)

    Prasanth, Chandra Sekhar; Betsy, Joseph; Subhash, Narayanan; Jayanthi, Jayaraj L.; Prasanthila, Janam

    2012-03-01

    In clinical diagnostic procedures, gingival inflammation is considered as the initial stage of periodontal breakdown. This is often detected clinically by bleeding on probing as it is an objective measure of inflammation. Since conventional diagnostic procedures have several inherent drawbacks, development of novel non-invasive diagnostic techniques assumes significance. This clinical study was carried out in 15 healthy volunteers and 25 patients to demonstrate the applicability of diffuse reflectance (DR) spectroscopy for quantification and discrimination of various stages of inflammatory conditions in periodontal disease. The DR spectra of diseased lesions recorded using a point monitoring system consisting of a tungsten halogen lamp and a fiber-optic spectrometer showed oxygenated hemoglobin absorption dips at 545 and 575 nm. Mean DR spectra on normalization shows marked differences between healthy and different stages of gingival inflammation. Among the various DR intensity ratios investigated, involving oxy Hb absorption peaks, the R620/R575 ratio was found to be a good parameter of gingival inflammation. In order to screen the entire diseased area and its surroundings instantaneously, DR images were recorded with an EMCCD camera at 620 and 575 nm. We have observed that using the DR image intensity ratio R620/R575 mild inflammatory tissues could be discriminated from healthy with a sensitivity of 92% and specificity of 93%, and from moderate with a sensitivity of 83% and specificity of 96%. The sensitivity and specificity obtained between moderate and severe inflammation are 82% and 76% respectively.

  3. [Attenuated Total Reflection Infrared Spectroscopy for Degradation Profile of High Density Polyethylene after Weathering Aging].

    PubMed

    Guo, Jun-jun; Yan, Hua; Bao, He-bin; Wang, Xue-mei; Hu, Zhi-de; Yang, Jian-jian

    2015-06-01

    High density polyethylene (HDPE) was widely used as rotational packaging case in the material reserve field. The chemical changes of HDPE, exposed to particular climatic conditions of tropic marine atmosphere for one year-long in Wanning Hainan, were elucidated by the attenuated total reflection infrared spectroscopy (ATR-FTIR). The structural changes were studied qualitatively, mainly from the polymeric chain breaking, branching and oxidation to distinguish the degradation profile. The variations of crystallinity & carbonyl index were also studied quantitatively according to the characteristic peaks intensity & area ratio. Finally, the relationships between structural changes and mechanical properties were investigated. The results showed that the polymeric chain breaking & branching play a leading role before 3 months in the aging progress. Then oxidation phenomena gradually takes place during 3-6 months. The chain branching & oxidation were predominant factors after 6 months. Nine months later, the oxidation was saturated gradually. Furthermore, the aging process is positively correlated to the temperature and irradiation. After 12 months aging, the carbonyl index increased by 112 times and crystallinity was 10% higher than before. The tensile/bending modulus deceased faster than tensile/bending strength of HDPE. The linear degree of tensile modulus and carbonyl index was 0.97. The degree of linearity of tensile strength and crystallinity calculated by feature bands (720-730 cm(-1)) was 0.96. It showed that the mechanical properties of HDPE can be speculated from the structural changes by ATR-FTIR.

  4. Preliminary Results from Reflectance Spectroscopy Observations of Space Debris in GEO

    NASA Astrophysics Data System (ADS)

    Vananti, A.; Schidknecht, T.; Krag, H.; Erd, C.

    2009-03-01

    The space debris environment in the Geostationary Earth Orbit (GEO) region is mostly investigated using optical telescopes. The detection of the objects and the determination of their orbits are based on optical observations. However, for a better characterization of the environment it would be necessary to know the shape and the material of the objects. The area-to-mass ratio can be estimated from orbit determinations. In some rare case additional information can be derived from photometric measurements. A possible technique to investigate the material type of the debris is the reflectance spectroscopy. This paper discusses preliminary results obtained from spectrometric observations of orbital space debris. The observations were acquired at the 1-meter ESA Space Debris Telescope (ESASDT) on Tenerife with a low-resolution spectrograph in the wavelength range of 450-960 nm. The observed objects are space debris in GEO orbits with brightness as small as magnitude 16. The spectra show shape variations expected to be caused by the different physical properties of the objects. The determination of the material and of the type of object is still in a preliminary phase. Limitations of the acquisition process of the spectra and the subsequent analysis are discussed. Future steps planned for a better characterization of the debris from the observed data are briefly outlined.

  5. Smartphone spectrometer for non-invasive diffuse reflectance spectroscopy based hemoglobin sensing (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Edwards, Perry S.

    2016-10-01

    Fiber-optic based diffuse reflectance spectroscopy (DRS) is shown to be a highly specific and highly sensitive method for non-invasive detection of various cancers (e.g. cervical and oral) as well as many other diseases. Fiber-optic DRS diagnosis relies on non-invasive biomarker detection (e.g. oxy- and deoxy-hemoglobin) and can be done without the need for sophisticated laboratory analysis of samples. Thus, it is highly amenable for clinical adoption especially in resource scarce regions that have limited access to such developed laboratory infrastructure. Despite the demonstrated effectiveness of fiber-optic DRS, such systems remain cost prohibitive in many of these regions, mainly due to the use of bulky and expensive spectrometers. Here, a fiber-optic DRS system is coupled to a smartphone spectrometer and is proposed as a low-cost solution for non-invasive tissue hemoglobin sensing. The performance of the system is assessed by measuring tissue phantoms with varying hemoglobin concentrations. A DRS retrieval algorithm is used to extract hemoglobin parameters from the measurements and determine the accuracy of the system. The results are then compared with those of a previously reported fiber-optic DRS system which is based on a larger more expensive spectrometer system. The preliminary results are encouraging and indicate the potential of the smartphone spectrometer as a viable low-cost option for non-invasive tissue hemoglobin sensing.

  6. Measurement of the fractional oxygenation of leghemoglobin in intact detached pea nodules by reflectance spectroscopy

    SciTech Connect

    Monroe, J.D.; Owens, T.G. ); LaRue, T.A. )

    1989-10-01

    A method is presented for the rapid measurement of the spectral properties of detached nodules of pea (Pisum sativum L. cv Sparkle) by diffuse reflectance spectroscopy. After correcting the spectra for surface light scattering, the spectrum of leghemoglobin is obtained. From this, the fractional oxygenation of leghemoglobin and the internal O{sub 2} concentration can be calculated. With this method, we determined internal O{sub 2} while measuring nitrogenase activity (C{sub 2}H{sub 2}) in detached pea nodules over a range of external O{sub 2} concentrations. Nitrogenase activity was maximum when leghemoglobin was 25% oxygenated, corresponding to a calculated free O{sub 2} concentration of 45 nanomolar in infected cells. Advantages of this method over previous methods which employed transmitted light are: (a) many nodules can be assayed simultaneously, (b) nitrogenase activity (C{sub 2}H{sub 2}) can be determined at the same time as spectra are recorded, and (c) spectra can be obtained from nodules submerged in buffer containing metabolic effectors.

  7. Micro-FTIR reflectance spectroscopy of the solid products from processing heavy oils/resids

    SciTech Connect

    Kybett, B.D.; Potter, J.; Vasu Nambudiri, E.M.; Krane-Solomon, M. ); Rahimi, P.M.; Dawson, W.H. )

    1989-04-01

    The various semicokes present in the solid products of processing heavy oils and resid can be characterized by their morphology. Knowledge of their chemicl composition would provide additional information about their origin and fate. Eser and Jenkins investigated the carbonization of Ashland-240 pitch and a vacuum distillation residue (VDR) at 723-773 K and obtained the FTIR spectra (KBr disc) of the pyridine insolubles without separation. The A-240 pitch showed gradual development of the mesophase producing large flow domains consisting of planar polycyclic aromatic units. The VDR showed more rapid development of the mesophase and the formation of mosaic semicoke containing highly substituted and condensed rings. Separation of the complex solid products of processing, in order to obtain spectra of each constituent, is difficult. Micro-FTIR reflectance spectroscopy can be used to obtain absorbance-like spectra of the components of solid mixtures without prior separation. The differences in the spectra of isotropic and anisotropic semicokes from the hydrogenation of a resid and the coprocessing of a coal/resid are discussed.

  8. Analysis of grass silage from Northwestern Spain by near-infrared reflectance spectroscopy.

    PubMed

    Villamarín, Begoña; Fernández, Esperanza; Mendéz, Jests

    2002-01-01

    Near-infrared reflectance spectroscopy (NIRS) was evaluated for the determination of protein, crude fiber (CF), acid detergent fiber (ADF), and neutral detergent fiber (NDF) in grass silage. Calibration equations were based on analyses of 366 samples of grass silage produced in Northwestern Spain over 4 consecutive years (1992-1995) and validated by analyses of a set of 72 silage samples harvested during 1996. Dried and ground samples were analyzed by chemical and NIRS procedures. The spectral data were analyzed by regression against a range of chemical parameters, using modified partial least-squares (MPLS) multivariate analysis in conjunction with different mathematical treatments of the spectra. For each parameter, the optimum calibration was evaluated on the basis of the coefficient of multiple determination (R2), the coefficient of simple correlation (r2), the standard error of calibration (SEC), the standard error of cross-validation (SECV), and the standard error of validation (SEV). R2 and r2 were >0.90; SEC values were 0.58, 1.04, 1.40, and 1.75; SECV values were 0.64,1.15,1.50, and 2.04; and SEV values were 0.56,1.02, 1.42, and 1.80 for protein, CF, ADF, and NDF, respectively. The ratio of the standard deviation of the reference data to the SEV was >3.0 for each of the 4 parameters, which indicates that the equations can be used in routine analysis.

  9. Crop/weed discrimination using near-infrared reflectance spectroscopy (NIRS)

    NASA Astrophysics Data System (ADS)

    Zhang, Yun; He, Yong

    2006-09-01

    The traditional uniform herbicide application often results in an over chemical residues on soil, crop plants and agriculture produce, which have imperiled the environment and food security. Near-infrared reflectance spectroscopy (NIRS) offers a promising means for weed detection and site-specific herbicide application. In laboratory, a total of 90 samples (30 for each species) of the detached leaves of two weeds, i.e., threeseeded mercury (Acalypha australis L.) and fourleafed duckweed (Marsilea quadrfolia L.), and one crop soybean (Glycine max) was investigated for NIRS on 325- 1075 nm using a field spectroradiometer. 20 absorbance samples of each species after pretreatment were exported and the lacked Y variables were assigned independent values for partial least squares (PLS) analysis. During the combined principle component analysis (PCA) on 400-1000 nm, the PC1 and PC2 could together explain over 91% of the total variance and detect the three plant species with 98.3% accuracy. The full-cross validation results of PLS, i.e., standard error of prediction (SEP) 0.247, correlation coefficient (r) 0.954 and root mean square error of prediction (RMSEP) 0.245, indicated an optimum model for weed identification. By predicting the remaining 10 samples of each species in the PLS model, the results with deviation presented a 100% crop/weed detection rate. Thus, it could be concluded that PLS was an available alternative of for qualitative weed discrimination on NTRS.

  10. [In situ diffuse reflectance FTIR spectroscopy characterization of titanium silicalite-1 catalytic oxidization of styrene].

    PubMed

    Zhang, Ping; Wang, Le-fu; Chen, Yong-heng

    2007-05-01

    The Stability of framework of titanium silicalite-1 (TS-1) was investigated by high temperature diffuse reflectance FT-IR spectroscopy (DRIFTS), and the results showed that the 960 cm(-1) peak belonging to Ti-framework was stabilized at 673 K, but the two peaks belonging to framework shifted to lower frequencies by about 13 cm(-1) at 673 K. The effect on the framework after H2O2 adsorption was discussed. The results showed that the 960 cm(-1) peak lowered and shifted to high frequencies by about 11 cm(-1), but it recovered with vacuum or heating up. It was suggested that the 960 cm(-1) peak characterizes Ti==O, and this explained why the 960 cm(-1) peak shifted to high frequencies well. TS-1 catalytic oxidization of styrene was investigated by in situ DRIFTS. The reaction process was detected and phenyl aldehyde was the main product. Based on in situ analysis, it was proposed that H2O2 was adsorbed on Ti in framework of TS-1 to form active center.

  11. [Experimental study of the red-bed pigment with diffuse reflectance spectroscopy].

    PubMed

    Jiang, Lian-Ting; Chen, Guo-Neng; Peng, Zhuo-Lun

    2013-10-01

    Red pigment of continental red-bed is known originating from the fine-particle hematite in the rocks. Advance of researches on the origin of continental red-bed demonstrates that the red pigment of red-bed originated from its diagenetic but not depositional process. The high diagenetic temperature causes the dehydration of iron hydrate to form hematite, generating the red pigment. For examining the above hypothesis, the authors of this paper designed an experiment to approach the reddening process, i.e. formation of the red pigment of continental red-bed. Black ooze sampled from the Holocene sediments of the Pearl River Delta was heated in different ways. The diffuse reflectance spectroscopy (DRS) of those heated ooze samples were detected with Perkin-Elmer Lamdba 950 ultraviolet/visible/near-infrared spectrophotometer, and moreover, red-values of the samples were calculated for determining their coloring levels. Iron in black ooze sediment is predominantly in the form of goethite. Experimental results verified that initial dehydration-temperature of goethite is about 150 degrees C, either enhancing temperature or prolonging heating time is accompanied with decreasing goethite and increasing hematite, and a positive relationship exists between red-value of samples and peak-height of hematite. The experimental results strongly support the idea of thermal origin of continental red-bed.

  12. Non-invasive evaluation of therapeutic response in keloid scar using diffuse reflectance spectroscopy.

    PubMed

    Hsu, Chao-Kai; Tzeng, Shih-Yu; Yang, Chao-Chun; Lee, Julia Yu-Yun; Huang, Lynn Ling-Huei; Chen, Wan-Rung; Hughes, Michael; Chen, Yu-Wen; Liao, Yu-Kai; Tseng, Sheng-Hao

    2015-02-01

    The pathogenesis and ideal treatment of keloid are still largely unknown, and it is essential to develop an objective assessment of keloid severity to evaluate the therapeutic response. We previously reported that our diffuse reflectance spectroscopy (DRS) system could assist clinicians in understanding the functional and structural condition of keloid scars. The purpose of this study was to understand clinical applicability of our DRS system on evaluating the scar severity and therapeutic response of keloid. We analyzed 228 spectral data from 71 subjects with keloid scars. The scars were classified into mild (0-3), moderate (4-7) and severe (8-11) according to the Vancouver scar scale. We found that as the severity of the scar increased, collagen concentration and water content increased, and the reduced scattering coefficient at 800 nm and oxygen saturation (SaO2) decreased. Using the DRS system, we found that collagen bundles aligned in a specific direction in keloid scars, but not in normal scars. Water content and SaO2 may be utilized as reliable parameters for evaluating the therapeutic response of keloid. In conclusion, the results obtained here suggest that the DRS has potential as an objective technique with which to evaluate keloid scar severity. In addition, it may be useful as a tool with which to track longitudinal response of scars in response to various therapeutic interventions.

  13. Detection of canine skin and subcutaneous tumors by visible and near-infrared diffuse reflectance spectroscopy.

    PubMed

    Cugmas, Blaž; Plavec, Tanja; Bregar, Maksimilijan; Naglič, Peter; Pernuš, Franjo; Likar, Boštjan; Bürmen, Miran

    2015-03-01

    Cancer is the main cause of canine morbidity and mortality. The existing evaluation of tumors requires an experienced veterinarian and usually includes invasive procedures (e.g., fine-needle aspiration) that can be unpleasant for the dog and the owner. We investigate visible and near-infrared diffuse reflectance spectroscopy (DRS) as a noninvasive optical technique for evaluation and detection of canine skin and subcutaneous tumors ex vivo and in vivo. The optical properties of tumors and skin were calculated in a spectrally constrained manner, using a lookup table-based inverse model. The obtained optical properties were analyzed and compared among different tumor groups. The calculated parameters of the absorption and reduced scattering coefficients were subsequently used for detection of malignant skin and subcutaneous tumors. The detection sensitivity and specificity of malignant tumors ex vivo were 90.0% and 73.5%, respectively, while corresponding detection sensitivity and specificity of malignant tumors in vivo were 88.4% and 54.6%, respectively. The obtained results show that the DRS is a promising noninvasive optical technique for detection and classification of malignant and benign canine skin and subcutaneous tumors. The method should be further investigated on tumors with common origin.

  14. Diffuse reflectance spectroscopy: toward real-time quantification of steatosis in liver.

    PubMed

    Evers, Daniel J; Westerkamp, Andrie C; Spliethoff, Jarich W; Pully, Vishnu V; Hompes, Daphne; Hendriks, Benno H W; Prevoo, Warner; van Velthuysen, Marie-Louise F; Porte, Robert J; Ruers, Theo J M

    2015-04-01

    Assessment of fatty liver grafts during orthotopic liver transplantation is a challenge due to the lack of real-time analysis options during surgery. Diffuse reflectance spectroscopy (DRS) could be a new diagnostic tool to quickly assess steatosis. Eight hundred and seventy-eight optical measurements were performed in vivo in 17 patients in liver tissue during surgery and ex vivo on liver resection specimens from 41 patients. Liver steatosis was quantified from the collected optical spectra and compared with the histology analysis from the measurement location by three independent pathologists. Twenty two patients were diagnosed with <5% steatosis, 15 patients had mild steatosis, and four had moderate steatosis. Severe steatosis was not identified. Intraclass correlation between the pathologists analysis was 0.949. A correlation of 0.854 was found between the histology and DRS analyses of liver steatosis ex vivo. For the same liver tissue, a correlation of 0.925 was demonstrated between in vivo and ex vivo DRS analysis for steatosis quantification. DRS can quantify steatosis in liver tissue both in vivo and ex vivo with good agreement compared to histopathology analysis. This analysis can be performed real time and may therefore be useful for fast objective assessment of liver steatosis in liver surgery.

  15. Inverse Monte Carlo in a multilayered tissue model: merging diffuse reflectance spectroscopy and laser Doppler flowmetry.

    PubMed

    Fredriksson, Ingemar; Burdakov, Oleg; Larsson, Marcus; Strömberg, Tomas

    2013-12-01

    The tissue fraction of red blood cells (RBCs) and their oxygenation and speed-resolved perfusion are estimated in absolute units by combining diffuse reflectance spectroscopy (DRS) and laser Doppler flowmetry (LDF). The DRS spectra (450 to 850 nm) are assessed at two source-detector separations (0.4 and 1.2 mm), allowing for a relative calibration routine, whereas LDF spectra are assessed at 1.2 mm in the same fiber-optic probe. Data are analyzed using nonlinear optimization in an inverse Monte Carlo technique by applying an adaptive multilayered tissue model based on geometrical, scattering, and absorbing properties, as well as RBC flow-speed information. Simulations of 250 tissue-like models including up to 2000 individual blood vessels were used to evaluate the method. The absolute root mean square (RMS) deviation between estimated and true oxygenation was 4.1 percentage units, whereas the relative RMS deviations for the RBC tissue fraction and perfusion were 19% and 23%, respectively. Examples of in vivo measurements on forearm and foot during common provocations are presented. The method offers several advantages such as simultaneous quantification of RBC tissue fraction and oxygenation and perfusion from the same, predictable, sampling volume. The perfusion estimate is speed resolved, absolute (% RBC×mm/s), and more accurate due to the combination with DRS.

  16. Micro-analysis by near-infrared diffuse reflectance spectroscopy with chemometric methods.

    PubMed

    Liu, Yan; Ning, Yu; Cai, Wensheng; Shao, Xueguang

    2013-11-07

    Great attention has been paid to near-infrared diffuse reflectance spectroscopy (NIRDRS) due to its practicability in analyzing real complex samples. However, the application of the technique in micro-analysis is badly restricted by its low sensitivity or high detection limit. In this study, the possibility of achieving the sensitive detection of micro-components using NIRDRS with the help of chemometric methods is studied with two experimental datasets. The results show that a very high sensitivity can be obtained when the noise and the variant background are minimized. Quantitative determination of low concentrations of pesticides and trace Cr(3+) in solutions is achieved by using preconcentration and chemometric approaches to minimize the noise and background. The absolute prediction error of the method can be as low as 7.6 μg for the pesticide and 28.6 μg for Cr(3+). These quantities are equivalent to 76 ng mL(-1) and 286 ng mL(-1) if 100 mL of solution are used for the analysis.

  17. Inverse Monte Carlo method in a multilayered tissue model for diffuse reflectance spectroscopy.

    PubMed

    Fredriksson, Ingemar; Larsson, Marcus; Strömberg, Tomas

    2012-04-01

    Model based data analysis of diffuse reflectance spectroscopy data enables the estimation of optical and structural tissue parameters. The aim of this study was to present an inverse Monte Carlo method based on spectra from two source-detector distances (0.4 and 1.2 mm), using a multilayered tissue model. The tissue model variables include geometrical properties, light scattering properties, tissue chromophores such as melanin and hemoglobin, oxygen saturation and average vessel diameter. The method utilizes a small set of presimulated Monte Carlo data for combinations of different levels of epidermal thickness and tissue scattering. The path length distributions in the different layers are stored and the effect of the other parameters is added in the post-processing. The accuracy of the method was evaluated using Monte Carlo simulations of tissue-like models containing discrete blood vessels, evaluating blood tissue fraction and oxygenation. It was also compared to a homogeneous model. The multilayer model performed better than the homogeneous model and all tissue parameters significantly improved spectral fitting. Recorded in vivo spectra were fitted well at both distances, which we previously found was not possible with a homogeneous model. No absolute intensity calibration is needed and the algorithm is fast enough for real-time processing.

  18. Evaluation of the stage of hemorrhage using optical diffuse reflectance spectroscopy: an in vivo study.

    PubMed

    Takeuchi, Satoru; Kawauchi, Satoko; Sato, Shunichi; Nawashiro, Hiroshi; Nagatani, Kimihiro; Kobayashi, Hiroaki; Otani, Naoki; Osada, Hideo; Wada, Kojiro; Shima, Katsuji

    2013-01-01

    Intracerebral hemorrhage (ICH) is a common and often fatal subtype of stroke. Estimation of the stage of hemorrhage allows clinicians to know when the hemorrhage occurred, even in unconscious patients, enabling decisions to be made about the optimal management and treatment strategy. After ICH, oxidative denaturation of the hemoglobin progresses, and deoxyhemoglobin is gradually converted to methemoglobin. MRI has been used to estimate the stage of hemorrhage by evaluating the status of hemoglobin. However, there is currently no bedside device that can be used for the measurement of hemoglobin derivatives in patients with hematomas. The aim of the present study was to investigate the validity of using optical diffuse reflectance spectroscopy (ODRS) for bedside evaluation of the stage of hemorrhage. An ICH model was generated in adult Sprague-Dawley male rats by stereotactically injecting 50 μl of autologous blood into the right caudate nucleus. To analyze the hemoglobin derivatives in the hematomas, ODRS measurement was performed for the rats in vivo. In all rats, we found increased absorption at around 630 nm, which indicated the formation of methemoglobin. In conclusion, the results of the present study suggest that ODRS allows clinicians to more easily evaluate the stage of hemorrhage at the patient's bedside.

  19. Rapid phytochemical analysis of birch (Betula) and poplar (Populus) foliage by near-infrared reflectance spectroscopy.

    PubMed

    Rubert-Nason, Kennedy F; Holeski, Liza M; Couture, John J; Gusse, Adam; Undersander, Daniel J; Lindroth, Richard L

    2013-02-01

    Poplar (Populus) and birch (Betula) species are widely distributed throughout the northern hemisphere, where they are foundation species in forest ecosystems and serve as important sources of pulpwood. The ecology of these species is strongly linked to their foliar chemistry, creating demand for a rapid, inexpensive method to analyze phytochemistry. Our study demonstrates the feasibility of using near-infrared reflectance spectroscopy (NIRS) as an inexpensive, high-throughput tool for determining primary (e.g., nitrogen, sugars, starch) and secondary (e.g., tannins, phenolic glycosides) foliar chemistry of Populus and Betula species, and identifies conditions necessary for obtaining reliable quantitative data. We developed calibrations with high predictive power (residual predictive deviations ≤ 7.4) by relating phytochemical concentrations determined with classical analytical methods (e.g., spectrophotometric assays, liquid chromatography) to NIR spectra, using modified partial least squares regression. We determine that NIRS, although less sensitive and precise than classical methods for some compounds, provides useful predictions in a much faster, less expensive manner than do classical methods.

  20. Laser spectroscopy of francium isotopes at the borders of the region of reflection asymmetry

    NASA Astrophysics Data System (ADS)

    Budinčević, I.; Billowes, J.; Bissell, M. L.; Cocolios, T. E.; de Groote, R. P.; De Schepper, S.; Fedosseev, V. N.; Flanagan, K. T.; Franchoo, S.; Garcia Ruiz, R. F.; Heylen, H.; Lynch, K. M.; Marsh, B. A.; Neyens, G.; Procter, T. J.; Rossel, R. E.; Rothe, S.; Strashnov, I.; Stroke, H. H.; Wendt, K. D. A.

    2014-07-01

    The magnetic dipole moments and changes in mean-square charge radii of the neutron-rich 218m,219,229,231Fr isotopes were measured with the newly installed Collinear Resonance Ionization Spectroscopy (CRIS) beam line at the On-Line Isotope Mass Separator (ISOLDE), CERN, probing the 7s2S1/2 to 8p2P3/2 atomic transition. The δA,221 values for 218m,219Fr and 229,231Fr follow the observed increasing slope of the charge radii beyond N =126. The charge radii odd-even staggering in this neutron-rich region is discussed, showing that 220Fr has a weakly inverted odd-even staggering while 228Fr has normal staggering. This suggests that both isotopes reside at the borders of a region of inverted staggering, which has been associated with reflection-asymmetric shapes. The g(219Fr )=+0.69(1) value supports a π1h9/2 shell-model configuration for the ground state. The g(229,231Fr ) values support the tentative Iπ(229,231Fr)=(1/2+) spin and point to a πs1/2-1 intruder ground-state configuration.

  1. In vivo diffuse reflectance micro-spectroscopy for correction of Raman depth profiles acquired on skin

    NASA Astrophysics Data System (ADS)

    Roig, Blandine; Koenig, Anne; Perraut, François; Piot, Olivier; Manfait, Michel; Dinten, Jean-Marc

    2016-04-01

    Confocal Raman microspectroscopy is a relevant and useful tool to perform in vivo diagnosis of cutaneous tissues noninvasively and without labeling. This optical technique provides in-depth molecular and conformational characterization of skin. Unfortunately, spectral distortions occur due to elastic scattering. Our objective is to correct the attenuation of in-depth Raman peaks intensity by considering elastic scattering in biological tissues. In this purpose, a correction model was constructed using skin scattering properties as parameters thus enabling quantitative analysis. The work presented here is a technique of in vivo Diffuse Reflectance Micro-Spectroscopy called Micro-DRS. It achieves optical properties characterization in the skin layers probed by Raman microspectroscopy. The Micro-DRS setup can easily be coupled to a confocal Raman micro-probe to perform simultaneous measurements. Thanks to Monte Carlo simulations and experimental results obtained on homemade solid phantoms mimicking skin optical properties, we show that it is possible to measure the absorption coefficient μa, the reduced scattering coefficient μs', the scattering coefficient μs and the anisotropy of scattering g with this new apparatus. The measured scattering properties can be used subsequently as parameters in our correction model. Coupled to a Raman micro-spectrometer, Micro-DRS enables a quantitative analysis when tracking drug penetration through skin and it can be used independently to provide additional diagnosing criterions.

  2. Inverse Monte Carlo in a multilayered tissue model: merging diffuse reflectance spectroscopy and laser Doppler flowmetry

    NASA Astrophysics Data System (ADS)

    Fredriksson, Ingemar; Burdakov, Oleg; Larsson, Marcus; Strömberg, Tomas

    2013-12-01

    The tissue fraction of red blood cells (RBCs) and their oxygenation and speed-resolved perfusion are estimated in absolute units by combining diffuse reflectance spectroscopy (DRS) and laser Doppler flowmetry (LDF). The DRS spectra (450 to 850 nm) are assessed at two source-detector separations (0.4 and 1.2 mm), allowing for a relative calibration routine, whereas LDF spectra are assessed at 1.2 mm in the same fiber-optic probe. Data are analyzed using nonlinear optimization in an inverse Monte Carlo technique by applying an adaptive multilayered tissue model based on geometrical, scattering, and absorbing properties, as well as RBC flow-speed information. Simulations of 250 tissue-like models including up to 2000 individual blood vessels were used to evaluate the method. The absolute root mean square (RMS) deviation between estimated and true oxygenation was 4.1 percentage units, whereas the relative RMS deviations for the RBC tissue fraction and perfusion were 19% and 23%, respectively. Examples of in vivo measurements on forearm and foot during common provocations are presented. The method offers several advantages such as simultaneous quantification of RBC tissue fraction and oxygenation and perfusion from the same, predictable, sampling volume. The perfusion estimate is speed resolved, absolute (% RBC×mm/s), and more accurate due to the combination with DRS.

  3. Non-invasive evaluation of therapeutic response in keloid scar using diffuse reflectance spectroscopy

    PubMed Central

    Hsu, Chao-Kai; Tzeng, Shih-Yu; Yang, Chao-Chun; Lee, Julia Yu-Yun; Huang, Lynn Ling-Huei; Chen, Wan-Rung; Hughes, Michael; Chen, Yu-Wen; Liao, Yu-Kai; Tseng, Sheng-Hao

    2015-01-01

    The pathogenesis and ideal treatment of keloid are still largely unknown, and it is essential to develop an objective assessment of keloid severity to evaluate the therapeutic response. We previously reported that our diffuse reflectance spectroscopy (DRS) system could assist clinicians in understanding the functional and structural condition of keloid scars. The purpose of this study was to understand clinical applicability of our DRS system on evaluating the scar severity and therapeutic response of keloid. We analyzed 228 spectral data from 71 subjects with keloid scars. The scars were classified into mild (0-3), moderate (4-7) and severe (8-11) according to the Vancouver scar scale. We found that as the severity of the scar increased, collagen concentration and water content increased, and the reduced scattering coefficient at 800 nm and oxygen saturation (SaO2) decreased. Using the DRS system, we found that collagen bundles aligned in a specific direction in keloid scars, but not in normal scars. Water content and SaO2 may be utilized as reliable parameters for evaluating the therapeutic response of keloid. In conclusion, the results obtained here suggest that the DRS has potential as an objective technique with which to evaluate keloid scar severity. In addition, it may be useful as a tool with which to track longitudinal response of scars in response to various therapeutic interventions. PMID:25780731

  4. Predicting glycogen concentration in the foot muscle of abalone using near infrared reflectance spectroscopy (NIRS).

    PubMed

    Fluckiger, Miriam; Brown, Malcolm R; Ward, Louise R; Moltschaniwskyj, Natalie A

    2011-06-15

    Near infrared reflectance spectroscopy (NIRS) was used to predict glycogen concentrations in the foot muscle of cultured abalone. NIR spectra of live, shucked and freeze-dried abalones were modelled against chemically measured glycogen data (range: 0.77-40.9% of dry weight (DW)) using partial least squares (PLS) regression. The calibration models were then used to predict glycogen concentrations of test abalone samples and model robustness was assessed from coefficient of determination of the validation (R2(val)) and standard error of prediction (SEP) values. The model for freeze-dried abalone gave the best prediction (R2(val) 0.97, SEP=1.71), making it suitable for quantifying glycogen. Models for live and shucked abalones had R2(val) of 0.86 and 0.90, and SEP of 3.46 and 3.07 respectively, making them suitable for producing estimations of glycogen concentration. As glycogen is a taste-active component associated with palatability in abalone, this study demonstrated the potential of NIRS as a rapid method to monitor the factors associated with abalone quality. Copyright © 2011 Elsevier Ltd. All rights reserved.

  5. [Discriminant Analysis of Lavender Essential Oil by Attenuated Total Reflectance Infrared Spectroscopy].

    PubMed

    Tang, Jun; Wang, Qing; Tong, Hong; Liao, Xiang; Zhang, Zheng-fang

    2016-03-01

    This work aimed to use attenuated total reflectance Fourier transform infrared spectroscopy to identify the lavender essential oil by establishing a Lavender variety and quality analysis model. So, 96 samples were tested. For all samples, the raw spectra were pretreated as second derivative, and to determine the 1 750-900 cm(-1) wavelengths for pattern recognition analysis on the basis of the variance calculation. The results showed that principal component analysis (PCA) can basically discriminate lavender oil cultivar and the first three principal components mainly represent the ester, alcohol and terpenoid substances. When the orthogonal partial least-squares discriminant analysis (OPLS-DA) model was established, the 68 samples were used for the calibration set. Determination coefficients of OPLS-DA regression curve were 0.959 2, 0.976 4, and 0.958 8 respectively for three varieties of lavender essential oil. Three varieties of essential oil's the root mean square error of prediction (RMSEP) in validation set were 0.142 9, 0.127 3, and 0.124 9, respectively. The discriminant rate of calibration set and the prediction rate of validation set had reached 100%. The model has the very good recognition capability to detect the variety and quality of lavender essential oil. The result indicated that a model which provides a quick, intuitive and feasible method had been built to discriminate lavender oils.

  6. Monitoring the sorption of propanoic acid by montmorillonite using Diffuse Reflectance Fourier Transform Infrared spectroscopy

    NASA Astrophysics Data System (ADS)

    Parker, R. W.; Frost, R. L.

    1998-06-01

    This paper describes how Diffuse Reflectance Fourier Transform Infrared (DRIFT) spectroscopy was used to monitor the sorption behavior of a short chain fatty acid, propanoic acid, on the clay mineral, montmorillonite. Organic acids bind to montmorillonite in two ways, either by dipole interaction with the oxygens in the interlayer space, or by bonding of the carboxylate anions to exposed aluminum ions. The DRIFT spectra of propanoic acid-montmorillonite complexes have bands at 1728 and 1554 cm-1, which are attributed to the symmetric, and antisymmetric stretching vibrations, respectively, of the C=O, ν(C=O)s, and O-C-O, ν(O-C-O)a, bonds of the carboxylic acid group. Each band represents one of the two different binding modes. These bands can be used to monitor the physical and chemical adsorption of the acid by the montmorillonite. When the peak area of each vibration is plotted against increasing acid concentration, both increase to a maximum. However the peak area for the ν(O-C-O)a vibration reaches a maximum at a much lower acid concentration than the ν(O=O)s vibration. The former maximum corresponds to saturation of the available binding sites on the edge surface aluminum ions. This concentration can be used to calculate the number of binding sites on the clay crystal. Where propanoic acid is allowed to diffuse from the clay, the bound fraction remains on the montmorillonite reducing the available acid that can be desorbed or leached from the clay.

  7. Incoherent broadband cavity-enhanced total internal reflection spectroscopy of surface-adsorbed metallo-porphyrins.

    PubMed

    Ruth, Albert A; Lynch, Kieran T

    2008-12-21

    An improvement of conventional attenuated total reflection (ATR) spectroscopy is demonstrated by applying an incoherent broadband light source (short-arc Xe-lamp) in a cavity-enhanced evanescent-wave absorption method. With this novel approach the absorption spectra of several metallo-octaethyl porphyrins (palladium (PdOEP), platinum (PtOEP) and zinc (ZnOEP)) in thin acetone solution layers and on a fused silica (FS) surface are studied between approximately 390 and 625 nm. The time dependence of the evaporation process of the solution on the FS surface is described. The maximum sensitivity of the setup is estimated at approximately 2 x 10(-5) per pass, which translates into a minimal detectable surface density of less than 2 x 10(-3) monolayers for the porphyrins studied (based on the strong absorption in the Soret bands). Changes of surface and solution spectra are characterised and discussed on the basis of observed band broadenings and spectral shifts. For Pd- and PtOEP the changes of spectral feature can be interpreted with respect to J-aggregate formation supported by polarization dependent measurements. The reason for an observed blue-shift of ca. 10 nm for the Soret band in ZnOEP in combination with a large red-shift of the Q-bands (11 nm for Q1 and 18 nm for Q2) is discussed.

  8. Incoherent broadband cavity-enhanced total internal reflection spectroscopy of surface-adsorbed metallo-porphyrins

    NASA Astrophysics Data System (ADS)

    Ruth, A. A.; Glaczynski, G.; Lynch, K. T.

    2009-04-01

    An improvement of conventional attenuated total reflection (ATR) spectroscopy is demonstrated by applying an incoherent broadband light source (short-arc Xe-lamp) in a cavity-enhanced evanescent-wave absorption method. With this novel approach the absorption spectra of several metallo-octaethyl porphyrins (Palladium (PdOEP), Platinum (PtOEP) and Zinc- (ZnOEP)) in thin acetone solution layers and on a fused silica (FS) surface were studied between 390 and 625 nm. The time dependence of the evaporation process of the solution on the FS surface is described. The maximum sensitivity of the setup is estimated at approximately 2 Ã- 10-5 per pass, which translates into a minimal detectable surface density of less than 2 Ã- 10-3 monolayers for the porphyrins studied (based on absorption in the strong Soret bands). Changes of surface and solution spectra are characterised and discussed on basis of observed band broadenings and spectral shifts. This new approach is of relevance for investigations in atmopsheric and planetary sciences involving absorbers on surfaces and heterogeneous chemistry.

  9. Diffuse reflectance spectroscopy to quantify inflammation of the oral epithelium In Vivo

    NASA Astrophysics Data System (ADS)

    Hattery, David W.; Gerdelman, Kristin; Hekmat, Farid; Chernomordik, Victor V.; Smith, Paul D.; Eidsath, Alec B.; Pursley, Randy; Atkinson, Jane; Mulshine, James; Gandjbakhche, Amir H.

    2002-05-01

    Recent studies suggest that inflammatory cell products may contribute to the evolution of particular cancers leading to new chemoprevention trials exploring the benefit of anti-inflammatory drugs such as aspirin and related products. As part of a prospective trial evaluating this anti-inflammatory strategy for oral cancer, we evaluated a non-invasive optical system to determine if we could use an indirect measure of oral inflammation, mucosal thickness, as a monitoring parameter to evaluate the effectiveness of anti-inflammatory drug therapy. Diffuse reflectance spectroscopy has the potential for probing near-surface structures, however, traditional methods for accounting for scattering of photons are generally invalid for typical epithelial thicknesses. Monte Carlo simulations have shown that, with proper scaling, a simple photon model may be used to predict photon behavior under these conditions. A differential measure, which is very sensitive to small changes, has been shown to have the potential to quantify epithelial thickness. A simple prototype device has been brought from desk, to bench and bedside in a rapid manner to fill a need for a non-invasive measure of oral inflammation. From the theory, a simple feature has been identified that corresponds to patient oral inflammation. Preliminary results from this work are presented and indicate that further development of the approach to enable quantification of epithelial thickness in vivo is warranted.

  10. Detection of sibutramine in adulterated dietary supplements using attenuated total reflectance-infrared spectroscopy.

    PubMed

    Deconinck, E; Cauwenbergh, T; Bothy, J L; Custers, D; Courselle, P; De Beer, J O

    2014-11-01

    Sibutramine is one of the most occurring adulterants encountered in dietary supplements with slimming as indication. These adulterated dietary supplements often contain a herbal matrix. When customs intercept these kind of supplements it is almost impossible to discriminate between the legal products and the adulterated ones, due to misleading packaging. Therefore in most cases these products are confiscated and send to laboratories for analysis. This results inherently in the confiscation of legal, non-adulterated products. Therefore there is a need for easy to use equipment and techniques to perform an initial screening of samples. Attenuated total reflectance-infrared (ATR-IR) spectroscopy was evaluated for the detection of sibutramine in adulterated dietary supplements. Data interpretation was performed using different basic chemometric techniques. It was found that the use of ATR-IR combined with the k-Nearest Neighbours (k-NN) was able to detect all adulterated dietary supplements in an external test set and this with a minimum of false positive results. This means that a small amount of legal products will still be confiscated and analyzed in a laboratory to be found negative, but no adulterated samples will pass the initial ATR-IR screening. Copyright © 2014 Elsevier B.V. All rights reserved.

  11. Fast Pyrolysis of Wood for Biofuels: Spatiotemporally Resolved Diffuse Reflectance In situ Spectroscopy of Particles.

    PubMed

    Paulsen, Alex D; Hough, Blake R; Williams, C Luke; Teixeira, Andrew R; Schwartz, Daniel T; Pfaendtner, Jim; Dauenhauer, Paul J

    2014-02-20

    Fast pyrolysis of woody biomass is a promising process capable of producing renewable transportation fuels to replace gasoline, diesel, and chemicals currently derived from nonrenewable sources. However, biomass pyrolysis is not yet economically viable and requires significant optimization before it can contribute to the existing oil-based transportation system. One method of optimization uses detailed kinetic models for predicting the products of biomass fast pyrolysis, which serve as the basis for the design of pyrolysis reactors capable of producing the highest value products. The goal of this work is to improve upon current pyrolysis models, usually derived from experiments with low heating rates and temperatures, by developing models that account for both transport and pyrolysis decomposition kinetics at high heating rates and high temperatures (>400 °C). A new experimental technique is proposed herein: spatiotemporally resolved diffuse reflectance in situ spectroscopy of particles (STR-DRiSP), which is capable of measuring biomass composition during fast pyrolysis with high spatial (10 μm) and temporal (1 ms) resolution. Compositional data were compared with a comprehensive 2D single-particle model, which incorporated a multistep, semiglobal reaction mechanism, prescribed particle shrinkage, and thermophysical properties that varied with temperature, composition, and orientation. The STR-DRiSP technique can be used to determine the transport-limited kinetic parameters of biomass decomposition for a wide variety of biomass feedstocks.

  12. Quantum state-resolved gas/surface reaction dynamics probed by reflection absorption infrared spectroscopy

    SciTech Connect

    Chen Li; Ueta, Hirokazu; Beck, Rainer D.; Bisson, Regis

    2013-05-15

    We report the design and characterization of a new molecular-beam/surface-science apparatus for quantum state-resolved studies of gas/surface reaction dynamics combining optical state-specific reactant preparation in a molecular beam by rapid adiabatic passage with detection of surface-bound reaction products by reflection absorption infrared spectroscopy (RAIRS). RAIRS is a non-invasive infrared spectroscopic detection technique that enables online monitoring of the buildup of reaction products on the target surface during reactant deposition by a molecular beam. The product uptake rate obtained by calibrated RAIRS detection yields the coverage dependent state-resolved reaction probability S({theta}). Furthermore, the infrared absorption spectra of the adsorbed products obtained by the RAIRS technique provide structural information, which help to identify nascent reaction products, investigate reaction pathways, and determine branching ratios for different pathways of a chemisorption reaction. Measurements of the dissociative chemisorption of methane on Pt(111) with this new apparatus are presented to illustrate the utility of RAIRS detection for highly detailed studies of chemical reactions at the gas/surface interface.

  13. Oswald-Kasper-Gaukler model for reflection electron energy loss spectroscopy

    NASA Astrophysics Data System (ADS)

    Salvat-Pujol, F.; Werner, W. S. M.

    2011-05-01

    The Oswald-Kasper-Gaukler (OKG) model for elastic electron backscattering [J. Electr. Spectrosc. Rel. Phen.JESRAW0368-204810.1016/0368-2048(93)80019-I 61(1993)251] has been extended within the partial-intensity approach to take inelastic collisions into account. Analytical expressions have been derived for the path-length distribution and the partial intensities, achieving good agreement with results of Monte Carlo (MC) calculations of these quantities. A criterion is given to predict the validity of the model for a given material, geometry, and kinetic energy. Experimental reflection electron energy loss spectroscopy (REELS) spectra have been compared with REELS spectra calculated using the modified OKG model, obtaining good agreement between them. The proposed model is also applied in a quantitative analysis of experimental REELS. In all investigated cases, the single-scattering loss distributions retrieved from this analysis agree with results from previous analyses—based on MC calculations—within 5%. The presented model can therefore be employed in quantitative analyses of REELS of semi-infinite solids, while it is both numerically simpler and conceptually clearer than related approaches.

  14. Spectral characteristics of chlorites and Mg-serpentines using high- resolution reflectance spectroscopy

    USGS Publications Warehouse

    King, T.V.V.; Clark, R.N.

    1989-01-01

    The present laboratory study using high-resolution reflectance spectroscopy (0.25-2.7 ??m) focuses on two primary phyllosilicate groups, serpentines and chlorites. The results show that it is possible to spectrally distinguish between isochemical end-members of the Mg-rich serpentine group (chrysotile, antigorite, and lizardite) and to recognize spectral variations in chlorites as a function of Fe/Mg ratio (~8-38 wt% Fe). The position and relative strength of the 1.4-??m absorption feature in the trioctahedral chlorites appear to be correlated to the total iron content and/or the Mg/Si ratio and the loss on ignition values of the sample. Spectral differences in the 2.3-??m wavelength region can be attributed to differences in lattice environments and are characteristic for specific trioctahedral chlorites. The 1.4-??m feature in the isochemical Mg-rich serpentines (total iron content ~1.5-7.0 wt%) show marked spectral differences, apparently due to structural differences. -Authors

  15. A method for monitoring of oxygen saturation changes in brain tissue using diffuse reflectance spectroscopy.

    PubMed

    Rejmstad, Peter; Johansson, Johannes D; Haj-Hosseini, Neda; Wårdell, Karin

    2017-03-01

    Continuous measurement of local brain oxygen saturation (SO2 ) can be used to monitor the status of brain trauma patients in the neurocritical care unit. Currently, micro-oxygen-electrodes are considered as the "gold standard" in measuring cerebral oxygen pressure (pO2 ), which is closely related to SO2 through the oxygen dissociation curve (ODC) of hemoglobin, but with the drawback of slow in response time. The present study suggests estimation of SO2 in brain tissue using diffuse reflectance spectroscopy (DRS) for finding an analytical relation between measured spectra and the SO2 for different blood concentrations. The P3 diffusion approximation is used to generate a set of spectra simulating brain tissue for various levels of blood concentrations in order to estimate SO2 . The algorithm is evaluated on optical phantoms mimicking white brain matter (blood volume of 0.5-2%) where pO2 and temperature is controlled and on clinical data collected during brain surgery. The suggested method is capable of estimating the blood fraction and oxygen saturation changes from the spectroscopic signal and the hemoglobin absorption profile.

  16. Monitoring blood volume and saturation using superficial fibre optic reflectance spectroscopy during PDT of actinic keratosis.

    PubMed

    Middelburg, Tom A; Kanick, Stephen C; de Haas, Ellen R M; Sterenborg, Henricus J C M; Amelink, Arjen; Neumann, Martino H A M; Robinson, Dominic J

    2011-10-01

    Optically monitoring the vascular physiology during photodynamic therapy (PDT) may help understand patient-specific treatment outcome. However, diffuse optical techniques have failed to observe changes herein, probably by optically sampling too deep. Therefore, we investigated using differential path-length spectroscopy (DPS) to obtain superficial measurements of vascular physiology in actinic keratosis (AK) skin. The AK-specific DPS interrogation depth was chosen up to 400 microns in depth, based on the thickness of AK histology samples. During light fractionated aminolevulinic acid-PDT, reflectance spectra were analyzed to yield quantitative estimates of blood volume and saturation. Blood volume showed significant lesion-specific changes during PDT without a general trend for all lesions and saturation remained high during PDT. This study shows that DPS allows optically monitoring the superficial blood volume and saturation during skin PDT. The patient-specific variability supports the need for dosimetric measurements. In DPS, the lesion-specific optimal interrogation depth can be varied based on lesion thickness.

  17. Study on mechanism of selective chemical vapor deposition of tungsten using in situ infrared spectroscopy and Auger electron spectroscopy

    NASA Astrophysics Data System (ADS)

    Kobayashi, Nobuyoshi; Goto, Hidekazu; Suzuki, Masayuki

    1991-01-01

    Selective chemical vapor deposition (CVD) of tungsten (W) using tungsten hexafluoride (WF6) and monosilane (SiH4) is investigated by in situ infrared spectroscopy and Auger electron spectroscopy. The infrared spectra show that trifluorosilane (SiHF3) is the main by-product species, and that silicon-tetrafluoride (SiF4) is less than 20%-25% of SiHF3 in partial pressure. The main chemical reaction involved in selective W CVD can be expressed as WF6+2SiH4→W+2SiHF3+3H2. Based on our experimental results, a new mechanism of selective W CVD, which notes hydrogen dissociation having a central role in this process, is proposed. It disproves the widely accepted model, which is based on the assumption that SiF4 is the major reaction product.

  18. Assessment of biophysical tumor response to PDT in pancreatic cancer using localized reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Isabelle, Martin; Klubben, William; He, Ting; Laughney, Ashley M.; Glaser, Adam; Krishnaswamy, Venkataramanan; Hoopes, P. Jack; Hasan, Tayyaba; Pogue, Brian W.

    2011-02-01

    Biophysical changes such as inflammation and necrosis occur immediately following PDT and may be used to assess the treatment response to PDT treatment in-vivo. This study uses localized reflectance measurements to quantify the scatter changes in tumor tissue occurring in response to verteporfin-based PDT treatment in xenograft pancreas tumors. Nude mice were implanted with subcutaneous AsPC-1 pancreatic tumors cells in matrigel, and allowed to establish solid tumors near 100mm3 volume. The mice were sensitized with 1mg/kg of the active component of verteporfin (benzoporphryin derivative, BPD), one hour before light delivery. The optical irradiation was performed using a 1 cm cylindrical interstitial diffusing tip fiber with 20J of red light (690nm). Tumor tissue was excised progressively and imaged, from 1 day to 4 weeks, after PDT treatment. The tissue sections were stained and analyzed by an expert veterinary pathologist, who provided information on tissue regions of interest. This information was correlated with variations in scattering and absorption parameters elucidated from the spectral images and the degree of necrosis and inflammation involvement was identified. Areas of necrosis and dead cells exhibited the lowest average scatter irradiance signature (3.78 and 4.07 respectively) compared to areas of viable pancreatic tumor cells and areas of inflammation (5.81 and 7.19 respectively). Bilirubin absorbance parameters also showed a lower absorbance value in necrotic tissue and areas of dead cells (0.05 and 0.1 respectively) compared to tissue areas for viable pancreatic tumor cells and areas of inflammation (0.28 and 0.35). These results demonstrate that localized reflectance spectroscopy is an imaging modality that can be used to identify tissue features associated with PDT treatment (e.g. necrosis and inflammation) that can be correlated with histopathologically-reviewed H&E stained slides. Further study of this technique may provide means for automated

  19. Diffuse near-infrared reflectance spectroscopy during heatstroke in a mouse model: pilot study

    NASA Astrophysics Data System (ADS)

    Abookasis, David; Zafrir, Elad; Nesher, Elimelech; Pinhasov, Albert; Sternklar, Shmuel; Mathews, Marlon S.

    2012-10-01

    Heatstroke, a form of hyperthermia, is a life-threatening condition characterized by an elevated core body temperature that rises above 40°C (104°F) and central nervous system dysfunction that results in delirium, convulsions, or coma. Without emergency treatment, the victim lapses into a coma and death soon follows. The study presented was conducted with a diffuse reflectance spectroscopy (DRS) setup to assess the effects of brain dysfunction that occurred during heatstroke in mice model (n=6). It was hypothesized that DRS can be utilized in small animal studies to monitor change in internal brain tissue temperature during heatstroke injury since it induces a sequence of pathologic changes that change the tissue composition and structure. Heatstroke was induced by exposure of the mice body under general anesthesia, to a high ambient temperature. A type of DRS in which the brain tissue was illuminated through the intact scalp with a broadband light source and diffuse reflected spectra was employed, taking in the spectral region between 650 and 1000 nm and acquired at an angle of 90 deg at a position on the scalp ˜12 mm from the illumination site. The temperature at the onset of the experiment was ˜34°C (rectal temperature) with increasing intervals of 1°C until mouse death. The increase in temperature caused optical scattering signal changes consistent with a structural alteration of brain tissue, ultimately resulting in death. We have found that the peak absorbance intensity and its second derivative at specific wavelengths correlate well with temperature with an exponential dependence. Based on these findings, in order to estimate the influence of temperature on the internal brain tissue a reflectance-temperature index was established and was seen to correlate as well with measured temperature. Overall, results indicate variations in neural tissue properties during heatstroke and the feasibility to monitor and assess internal temperature variations using

  20. [Fast determination of induction period of motor gasoline using Fourier transform attenuated total reflection infrared spectroscopy].

    PubMed

    Liu, Ya-Fei; Yuan, Hong-Fu; Song, Chun-Feng; Xie, Jin-Chun; Li, Xiao-Yu; Yan, De-Lin

    2014-11-01

    A new method is proposed for the fast determination of the induction period of gasoline using Fourier transform attenuated total reflection infrared spectroscopy (ATR-FTIR). A dedicated analysis system with the function of spectral measurement, data processing, display and storage was designed and integrated using a Fourier transform infrared spectrometer module and chemometric software. The sample presentation accessory designed which has advantages of constant optical path, convenient sample injection and cleaning is composed of a nine times reflection attenuated total reflectance (ATR) crystal of zinc selenide (ZnSe) coated with a diamond film and a stainless steel lid with sealing device. The influence of spectral scanning number and repeated sample loading times on the spectral signal-to-noise ratio was studied. The optimum spectral scanning number is 15 times and the optimum sample loading number is 4 times. Sixty four different gasoline samples were collected from the Beijing-Tianjin area and the induction period values were determined as reference data by standard method GB/T 8018-87. The infrared spectra of these samples were collected in the operating condition mentioned above using the dedicated fast analysis system. Spectra were pretreated using mean centering and 1st derivative to reduce the influence of spectral noise and baseline shift A PLS calibration model for the induction period was established by correlating the known induction period values of the samples with their spectra. The correlation coefficient (R2), standard error of calibration (SEC) and standard error of prediction (SEP) of the model are 0.897, 68.3 and 91.9 minutes, respectively. The relative deviation of the model for gasoline induction period prediction is less than 5%, which meets the requirements of repeatability tolerance in GB method. The new method is simple and fast. It takes no more than 3 minutes to detect one sample. Therefore, the method is feasible for implementing