A new method for simultaneous detection and discrimination of Bovine herpesvirus types 1 (BoHV-1) and 5 (BoHV-5) using real time PCR with high resolution melting (HRM) analysis.

PubMed

Marin, M S; Quintana, S; Leunda, M R; Recavarren, M; Pagnuco, I; Späth, E; Pérez, S; Odeón, A

2016-01-01

Bovine herpesvirus types 1 (BoHV-1) and 5 (BoHV-5) are antigenically and genetically similar. The aim of this study was to develop a simple and reliable one-step real time PCR assay with high resolution melting (HRM) analysis for the simultaneous detection and differentiation of BoHV-1 and BoHV-5. Optimization of assay conditions was performed with DNA from reference strains. Then, DNA from field isolates, clinical samples and tissue samples of experimentally infected animals were studied by real time PCR-HRM. An efficient amplification of real time PCR products was obtained, and a clear melting curve and appropriate melting peaks for both viruses were achieved in the HRM curve analysis for BoHV type identification. BoHV was identified in all of the isolates and clinical samples, and BoHV types were properly differentiated. Furthermore, viral DNA was detected in 12/18 and 7/18 samples from BoHV-1- and BoHV-5-infected calves, respectively. Real time PCR-HRM achieved a higher sensitivity compared with virus isolation or conventional PCR. In this study, HRM was used as a novel procedure. This method provides rapid, sensitive, specific and simultaneous detection of bovine alpha-herpesviruses DNA. Thus, this technique is an excellent tool for diagnosis, research and epidemiological studies of these viruses in cattle. Copyright © 2015 Elsevier B.V. All rights reserved.

The transient response of ice-shelf melting to ocean change

NASA Astrophysics Data System (ADS)

Holland, P.

2017-12-01

Idealised modelling studies show that the melting of ice shelves varies as a quadratic function of ocean temperature. This means that warm-water ice shelves have higher melt rates and are also more sensitive to ocean warming. However, this result is the equilibrium response, derived from a set of ice—ocean simulations subjected to a fixed ocean forcing and run until steady. This study considers instead the transient response of melting, using unsteady simulations subjected to forcing conditions that are oscillated in time with a range of periods. The results show that when the ocean forcing is varied slowly, the melt rates follow the equililbrium response. However, for rapid ocean change melting deviates from the equilibrium response in interesting ways. The residence time of water in the sub-ice cavity offers a critical timescale. When the forcing varies slowly (period of oscillation >> residence time), the cavity is fully-flushed with forcing anomalies at all stages of the cycle and melting follows the equilibrium response. When the forcing varies rapidly (period ≤ residence time), multiple cold and warm anomalies coexist in the cavity, cancelling each other in the spatial mean and thus inducing a relatively steady melt rate. This implies that all ice shelves have a maximum frequency of ocean variability that can be manifested in melting. The results also show that ice shelves forced by warm water have high melt rates, high equilibrium sensitivity, and short residence times, hence a short timescale over which the equilibrium sensitivity is manifest. The most rapid melting adjustment is induced by warm anomalies that are also saline. Thus, ice shelves in the Amundsen and Bellingshausen seas, Antarctica, are highly sensitive to ocean change.

Study on hot melt pressure sensitive coil material for removing surface nuclear pollution dust

NASA Astrophysics Data System (ADS)

Wang, Jing; Li, Jiao; Wang, Jianhui; Zheng, Li; Li, Jian; Lv, Linmei

2018-02-01

A new method for removing surface nuclear pollution by using hot melt pressure sensitive membrane was presented. The hot melt pressure sensitive membrane was designed and prepared by screening hot melt pressure sensitive adhesive and substrate. The simulated decontamination test of the hot melt pressure sensitive membrane was performed by using 100 mesh and 20 mesh standard sieve dust for simulation of nuclear explosion fall ash and radioactive contaminated particles, respectively. It was found that the single decontamination rate of simulated fall ash and contaminated particles were both above 80% under pressure conditions of 25kPa or more at 140°C. And the maximum single decontamination rate was 92.5%. The influence of heating temperature and pressure on the decontamination rate of the membrane was investigated at the same time. The results showed that higher heating temperature could increase the decontamination rate by increasing the viscosity of the adhesive. When the adhesive amount of the adhesive layer reached saturation, a higher pressure could increase the single decontamination rate also.

Differentiation of minute virus of mice and mouse parvovirus by high resolution melting curve analysis.

PubMed

Rao, Dan; Wu, Miaoli; Wang, Jing; Yuan, Wen; Zhu, Yujun; Cong, Feng; Xu, Fengjiao; Lian, Yuexiao; Huang, Bihong; Wu, Qiwen; Chen, Meili; Zhang, Yu; Huang, Ren; Guo, Pengju

2017-12-01

Murine parvovirus is one of the most prevalent infectious pathogens in mouse colonies. A specific primer pair targeting the VP2 gene of minute virus of mice (MVM) and mouse parvovirus (MPV) was utilized for high resolution melting (HRM) analysis. The resulting melting curves could distinguish these two virus strains and there was no detectable amplification of the other mouse pathogens which included rat parvovirus (KRV), ectromelia virus (ECT), mouse adenovirus (MAD), mouse cytomegalovirus (MCMV), polyoma virus (Poly), Helicobactor hepaticus (H. hepaticus) and Salmonella typhimurium (S. typhimurium). The detection limit of the standard was 10 copies/μL. This study showed that the PCR-HRM assay could be an alternative useful method with high specificity and sensitivity for differentiating murine parvovirus strains MVM and MPV. Copyright © 2017 Elsevier B.V. All rights reserved.

Response of Antarctic ice shelf melt to SAM trend and possible feedbacks with the ice-dynamics

NASA Astrophysics Data System (ADS)

Donat-Magnin, Marion; Jourdain, Nicolas C.; Gallée, Hubert; Spence, Paul; Cornford, Stephen L.; Le Sommer, Julien; Durand, Gaël

2017-04-01

The observed positive trend in the Southern Annular Mode (SAM) may warm the Southern Ocean sub-surface through decreased Ekman downward pumping. Subsequent change in ice-shelves melt has been suggested to trigger glacier acceleration in West Antarctica. Here we use a regional ocean model configuration of the Amundsen Sea that includes interactive ice-shelf cavities. Our results show that the inclusion of ice-shelves changes the ocean response to the projected SAM trend, i.e. it typically inhibits a part of the SAM-induced subsurface warming. Heat budget analysis has been used to propose responsible mechanisms. Regarding Thwaites and Pine Island, sub ice-shelf melt increases above 400m by approximately 40% for Thwaites and 10% for Pine Island and decreases by up to 10% below in response to ocean temperature changes driven by the projected SAM trend. The melt sensitivity to poleward shifting winds is nonetheless small compared to the sensitivity to an ice-sheet instability, i.e. to a projected change in the shape of ice-shelf cavities. For instance, the sub ice-shelf melt are doubled near the grounding line of some glaciers in response to the largest grounding line retreat projected for 2100. Large increase in basal melt close to the grounding line could largely impact instability and glacier acceleration. Our work suggests the need for including ice shelves into ocean models, and to couple ocean models to ice-sheet models in climate projections.

Detection of somatic mutations by high-resolution DNA melting (HRM) analysis in multiple cancers.

PubMed

Gonzalez-Bosquet, Jesus; Calcei, Jacob; Wei, Jun S; Garcia-Closas, Montserrat; Sherman, Mark E; Hewitt, Stephen; Vockley, Joseph; Lissowska, Jolanta; Yang, Hannah P; Khan, Javed; Chanock, Stephen

2011-01-17

Identification of somatic mutations in cancer is a major goal for understanding and monitoring the events related to cancer initiation and progression. High resolution melting (HRM) curve analysis represents a fast, post-PCR high-throughput method for scanning somatic sequence alterations in target genes. The aim of this study was to assess the sensitivity and specificity of HRM analysis for tumor mutation screening in a range of tumor samples, which included 216 frozen pediatric small rounded blue-cell tumors as well as 180 paraffin-embedded tumors from breast, endometrial and ovarian cancers (60 of each). HRM analysis was performed in exons of the following candidate genes known to harbor established commonly observed mutations: PIK3CA, ERBB2, KRAS, TP53, EGFR, BRAF, GATA3, and FGFR3. Bi-directional sequencing analysis was used to determine the accuracy of the HRM analysis. For the 39 mutations observed in frozen samples, the sensitivity and specificity of HRM analysis were 97% and 87%, respectively. There were 67 mutation/variants in the paraffin-embedded samples, and the sensitivity and specificity for the HRM analysis were 88% and 80%, respectively. Paraffin-embedded samples require higher quantity of purified DNA for high performance. In summary, HRM analysis is a promising moderate-throughput screening test for mutations among known candidate genomic regions. Although the overall accuracy appears to be better in frozen specimens, somatic alterations were detected in DNA extracted from paraffin-embedded samples.

Detection of Somatic Mutations by High-Resolution DNA Melting (HRM) Analysis in Multiple Cancers

PubMed Central

Gonzalez-Bosquet, Jesus; Calcei, Jacob; Wei, Jun S.; Garcia-Closas, Montserrat; Sherman, Mark E.; Hewitt, Stephen; Vockley, Joseph; Lissowska, Jolanta; Yang, Hannah P.; Khan, Javed; Chanock, Stephen

2011-01-01

Identification of somatic mutations in cancer is a major goal for understanding and monitoring the events related to cancer initiation and progression. High resolution melting (HRM) curve analysis represents a fast, post-PCR high-throughput method for scanning somatic sequence alterations in target genes. The aim of this study was to assess the sensitivity and specificity of HRM analysis for tumor mutation screening in a range of tumor samples, which included 216 frozen pediatric small rounded blue-cell tumors as well as 180 paraffin-embedded tumors from breast, endometrial and ovarian cancers (60 of each). HRM analysis was performed in exons of the following candidate genes known to harbor established commonly observed mutations: PIK3CA, ERBB2, KRAS, TP53, EGFR, BRAF, GATA3, and FGFR3. Bi-directional sequencing analysis was used to determine the accuracy of the HRM analysis. For the 39 mutations observed in frozen samples, the sensitivity and specificity of HRM analysis were 97% and 87%, respectively. There were 67 mutation/variants in the paraffin-embedded samples, and the sensitivity and specificity for the HRM analysis were 88% and 80%, respectively. Paraffin-embedded samples require higher quantity of purified DNA for high performance. In summary, HRM analysis is a promising moderate-throughput screening test for mutations among known candidate genomic regions. Although the overall accuracy appears to be better in frozen specimens, somatic alterations were detected in DNA extracted from paraffin-embedded samples. PMID:21264207

Barcoding Melting Curve Analysis for Rapid, Sensitive, and Discriminating Authentication of Saffron (Crocus sativus L.) from Its Adulterants

PubMed Central

Cao, Liang; Yuan, Yuan; Chen, Min; Jin, Yan; Huang, Luqi

2014-01-01

Saffron (Crocus sativus L.) is one of the most important and expensive medicinal spice products in the world. Because of its high market value and premium price, saffron is often adulterated through the incorporation of other materials, such as Carthamus tinctorius L. and Calendula officinalis L. flowers, Hemerocallis L. petals, Daucus carota L. fleshy root, Curcuma longa L. rhizomes, Zea may L., and Nelumbo nucifera Gaertn. stigmas. To develop a straightforward, nonsequencing method for rapid, sensitive, and discriminating detection of these adulterants in traded saffron, we report here the application of a barcoding melting curve analysis method (Bar-MCA) that uses the universal chloroplast plant DNA barcoding region trnH-psbA to identify adulterants. When amplified at DNA concentrations and annealing temperatures optimized for the curve analysis, peaks were formed at specific locations for saffron (81.92°C) and the adulterants: D. carota (81.60°C), C. tinctorius (80.10°C), C. officinalis (79.92°C), Dendranthema morifolium (Ramat.) Tzvel. (79.62°C), N. nucifera (80.58°C), Hemerocallis fulva (L.) L. (84.78°C), and Z. mays (84.33°C). The constructed melting curves for saffron and its adulterants have significantly different peak locations or shapes. In conclusion, Bar-MCA could be a faster and more cost-effective method to authenticate saffron and detect its adulterants. PMID:25548775

Detection of diarrheagenic Escherichia coli by use of melting-curve analysis and real-time multiplex PCR.

PubMed

Guion, Chase E; Ochoa, Theresa J; Walker, Christopher M; Barletta, Francesca; Cleary, Thomas G

2008-05-01

Diarrheagenic Escherichia coli strains are important causes of diarrhea in children from the developing world and are now being recognized as emerging enteropathogens in the developed world. Current methods of detection are too expensive and labor-intensive for routine detection of these organisms to be practical. We developed a real-time fluorescence-based multiplex PCR for the detection of all six of the currently recognized classes of diarrheagenic E. coli. The primers were designed to specifically amplify eight different virulence genes in the same reaction: aggR for enteroaggregative E. coli, stIa/stIb and lt for enterotoxigenic E. coli, eaeA for enteropathogenic E. coli and Shiga toxin-producing E. coli (STEC), stx(1) and stx(2) for STEC, ipaH for enteroinvasive E. coli, and daaD for diffusely adherent E. coli (DAEC). Eighty-nine of ninety diarrheagenic E. coli and 36/36 nonpathogenic E. coli strains were correctly identified using this approach (specificity, 1.00; sensitivity, 0.99). The single false negative was a DAEC strain. The total time between preparation of DNA from E. coli colonies on agar plates and completion of PCR and melting-curve analysis was less than 90 min. The cost of materials was low. Melting-point analysis of real-time multiplex PCR is a rapid, sensitive, specific, and inexpensive method for detection of diarrheagenic E. coli.

Barcoding melting curve analysis for rapid, sensitive, and discriminating authentication of saffron (Crocus sativus L.) from its adulterants.

PubMed

Jiang, Chao; Cao, Liang; Yuan, Yuan; Chen, Min; Jin, Yan; Huang, Luqi

2014-01-01

Saffron (Crocus sativus L.) is one of the most important and expensive medicinal spice products in the world. Because of its high market value and premium price, saffron is often adulterated through the incorporation of other materials, such as Carthamus tinctorius L. and Calendula officinalis L. flowers, Hemerocallis L. petals, Daucus carota L. fleshy root, Curcuma longa L. rhizomes, Zea may L., and Nelumbo nucifera Gaertn. stigmas. To develop a straightforward, nonsequencing method for rapid, sensitive, and discriminating detection of these adulterants in traded saffron, we report here the application of a barcoding melting curve analysis method (Bar-MCA) that uses the universal chloroplast plant DNA barcoding region trnH-psbA to identify adulterants. When amplified at DNA concentrations and annealing temperatures optimized for the curve analysis, peaks were formed at specific locations for saffron (81.92°C) and the adulterants: D. carota (81.60°C), C. tinctorius (80.10°C), C. officinalis (79.92°C), Dendranthema morifolium (Ramat.) Tzvel. (79.62°C), N. nucifera (80.58°C), Hemerocallis fulva (L.) L. (84.78°C), and Z. mays (84.33°C). The constructed melting curves for saffron and its adulterants have significantly different peak locations or shapes. In conclusion, Bar-MCA could be a faster and more cost-effective method to authenticate saffron and detect its adulterants.

Thermal-capillary analysis of small-scale floating zones Steady-state calculations

NASA Technical Reports Server (NTRS)

Duranceau, J. L.; Brown, R. A.

1986-01-01

Galerkin finite element analysis of a thermal-capillary model of the floating zone crystal growth process is used to predict the dependence of molten zone shape on operating conditions for the growth of small silicon boules. The model accounts for conduction-dominated heat transport in the melt, feed rod and growing crystal and for radiation between these phases, the ambient and a heater. Surface tension acting on the shape of the melt/gas meniscus counteracts gravity to set the shape of the molten zone. The maximum diameter of the growing crystal is set by the dewetting of the melt from the feed rod when the crystal radius is large. Calculations with small Bond number show the increased zone lengths possible for growth in a microgravity environment. The sensitivity of the method to the shape and intensity of the applied heating distribution is demonstrated. The calculations are compared with experimental observations.

Evaluating the Sensitivity of Glacial Isostatic Adjustment to a Hydrous Melt at 410 km Depth

NASA Astrophysics Data System (ADS)

Hill, A. M.; Milne, G. A.; Ranalli, G.

2017-12-01

We present a sensitivity analysis aimed at testing whether observables related to GIA can support or refute the existence of a low viscosity partial melt layer located above the mantle transition zone, as required by the so-called "Transition Zone Water Filter" model (Bercovici and Karato 2003). In total, 400 model runs were performed sampling a range of melt layer thicknesses (1, 10 & 20 km) and viscosities (1015 - 1019 Pas) as well as plausible viscosity values in the upper and lower mantle. Comparing model output of postglacial decay times and j2, 18 of the considered viscosity models were found to be compatible with all of the observational constraints. Amongst these, only three `background' upper and lower mantle viscosities are permitted regardless of the properties of the melt layer: an upper mantle value of 3×1020 Pas and lower mantle values of 1022, 3×1022 and 5×1022 Pas. Concerning the properties of the melt layer itself, a thin (1 km) layer may have any of the investigated viscosities (1015 to 1019 Pas). For thicker melt layers, the viscosity must be ≥1018 Pas (20 km) or ≥1017 Pas (10 km). Our results indicate clear parameter trade-offs between the properties of the melt layer and the background viscosity structure. Given that the observations permit several values of lower mantle viscosity, we conclude that tightening constraints on this parameter would be valuable for future investigation of the type presented here. Furthermore, while decay times from both locations considered in this investigation (Ångerman River, Sweden; Richmond Gulf, Canada) offer meaningful constraints on viscosity structure, the value for Richmond Gulf is significantly more uncertain and so increasing its precision would likely result in improved viscosity constraints.

First-principles melting of gallium clusters down to nine atoms: structural and electronic contributions to melting.

PubMed

Steenbergen, Krista G; Gaston, Nicola

2013-10-07

First-principles Born-Oppenheimer molecular dynamics simulations of small gallium clusters, including parallel tempering, probe the distinction between cluster and molecule in the size range of 7-12 atoms. In contrast to the larger sizes, dynamic measures of structural change at finite temperature demonstrate that Ga7 and Ga8 do not melt, suggesting a size limit to melting in gallium exists at 9 atoms. Analysis of electronic structure further supports this size limit, additionally demonstrating that a covalent nature cannot be identified for clusters larger than the gallium dimer. Ga9, Ga10 and Ga11 melt at greater-than-bulk temperatures, with no evident covalent character. As Ga12 represents the first small gallium cluster to melt at a lower-than-bulk temperature, we examine the structural properties of each cluster at finite temperature in order to probe both the origins of greater-than-bulk melting, as well as the significant differences in melting temperatures induced by a single atom addition. Size-sensitive melting temperatures can be explained by both energetic and entropic differences between the solid and liquid phases for each cluster. We show that the lower-than-bulk melting temperature of the 12-atom cluster can be attributed to persistent pair bonding, reminiscent of the pairing observed in α-gallium. This result supports the attribution of greater-than-bulk melting in gallium clusters to the anomalously low melting temperature of the bulk, due to its dimeric structure.

Real-time RT-PCR high-resolution melting curve analysis and multiplex RT-PCR to detect and differentiate grapevine leafroll-associated virus 3 variant groups I, II, III and VI.

PubMed

Bester, Rachelle; Jooste, Anna E C; Maree, Hans J; Burger, Johan T

2012-09-27

Grapevine leafroll-associated virus 3 (GLRaV-3) is the main contributing agent of leafroll disease worldwide. Four of the six GLRaV-3 variant groups known have been found in South Africa, but their individual contribution to leafroll disease is unknown. In order to study the pathogenesis of leafroll disease, a sensitive and accurate diagnostic assay is required that can detect different variant groups of GLRaV-3. In this study, a one-step real-time RT-PCR, followed by high-resolution melting (HRM) curve analysis for the simultaneous detection and identification of GLRaV-3 variants of groups I, II, III and VI, was developed. A melting point confidence interval for each variant group was calculated to include at least 90% of all melting points observed. A multiplex RT-PCR protocol was developed to these four variant groups in order to assess the efficacy of the real-time RT-PCR HRM assay. A universal primer set for GLRaV-3 targeting the heat shock protein 70 homologue (Hsp70h) gene of GLRaV-3 was designed that is able to detect GLRaV-3 variant groups I, II, III and VI and differentiate between them with high-resolution melting curve analysis. The real-time RT-PCR HRM and the multiplex RT-PCR were optimized using 121 GLRaV-3 positive samples. Due to a considerable variation in melting profile observed within each GLRaV-3 group, a confidence interval of above 90% was calculated for each variant group, based on the range and distribution of melting points. The intervals of groups I and II could not be distinguished and a 95% joint confidence interval was calculated for simultaneous detection of group I and II variants. An additional primer pair targeting GLRaV-3 ORF1a was developed that can be used in a subsequent real-time RT-PCR HRM to differentiate between variants of groups I and II. Additionally, the multiplex RT-PCR successfully validated 94.64% of the infections detected with the real-time RT-PCR HRM. The real-time RT-PCR HRM provides a sensitive, automated and rapid tool to detect and differentiate different variant groups in order to study the epidemiology of leafroll disease.

Rapid detection of G6PD mutations by multicolor melting curve analysis.

PubMed

Xia, Zhongmin; Chen, Ping; Tang, Ning; Yan, Tizhen; Zhou, Yuqiu; Xiao, Qizhi; Huang, Qiuying; Li, Qingge

2016-09-01

The MeltPro G6PD assay is the first commercial genetic test for glucose-6-phosphate dehydrogenase (G6PD) deficiency. This multicolor melting curve analysis-based real-time PCR assay is designed to genotype 16 G6PD mutations prevalent in the Chinese population. We comprehensively evaluated both the analytical and clinical performances of this assay. All 16 mutations were accurately genotyped, and the standard deviation of the measured Tm was <0.3°C. The limit of detection was 1.0ng/μL human genomic DNA. The assay could be run on four mainstream models of real-time PCR machines. The shortest running time (150min) was obtained with LightCycler 480 II. A clinical study using 763 samples collected from three hospitals indicated that, of 433 samples with reduced G6PD activity, the MeltPro assay identified 423 samples as mutant, yielding a clinical sensitivity of 97.7% (423/433). Of the 117 male samples with normal G6PD activity, the MeltPro assay confirmed that 116 samples were wild type, yielding a clinical specificity of 99.1% (116/117). Moreover, the MeltPro assay demonstrated 100% concordance with DNA sequencing for all targeted mutations. We concluded that the MeltPro G6PD assay is useful as a diagnostic or screening tool for G6PD deficiency in clinical settings. Copyright © 2016 Elsevier Inc. All rights reserved.

Rapid and specific detection of Salmonella in water samples using real-time PCR and High Resolution Melt (HRM) curve analysis.

PubMed

van Blerk, G N; Leibach, L; Mabunda, A; Chapman, A; Louw, D

2011-01-01

A real-time PCR assay combined with a pre-enrichment step for the specific and rapid detection of Salmonella in water samples is described. Following amplification of the invA gene target, High Resolution Melt (HRM) curve analysis was used to discriminate between products formed and to positively identify invA amplification. The real-time PCR assay was evaluated for specificity and sensitivity. The assay displayed 100% specificity for Salmonella and combined with a 16-18 h non-selective pre-enrichment step, the assay proved to be highly sensitive with a detection limit of 1.0 CFU/ml for surface water samples. The detection assay also demonstrated a high intra-run and inter-run repeatability with very little variation in invA amplicon melting temperature. When applied to water samples received routinely by the laboratory, the assay showed the presence of Salmonella in particularly surface water and treated effluent samples. Using the HRM based assay, the time required for Salmonella detection was drastically shortened to less than 24 h compared to several days when using standard culturing methods. This assay provides a useful tool for routine water quality monitoring as well as for quick screening during disease outbreaks.

Ranking of sabotage/tampering avoidance technology alternatives

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andrews, W.B.; Tabatabai, A.S.; Powers, T.B.

1986-01-01

Pacific Northwest Laboratory conducted a study to evaluate alternatives to the design and operation of nuclear power plants, emphasizing a reduction of their vulnerability to sabotage. Estimates of core melt accident frequency during normal operations and from sabotage/tampering events were used to rank the alternatives. Core melt frequency for normal operations was estimated using sensitivity analysis of results of probabilistic risk assessments. Core melt frequency for sabotage/tampering was estimated by developing a model based on probabilistic risk analyses, historic data, engineering judgment, and safeguards analyses of plant locations where core melt events could be initiated. Results indicate the most effectivemore » alternatives focus on large areas of the plant, increase safety system redundancy, and reduce reliance on single locations for mitigation of transients. Less effective options focus on specific areas of the plant, reduce reliance on some plant areas for safe shutdown, and focus on less vulnerable targets.« less

Structural Fluctuations and Thermophysical Properties of Molten II-VI Compounds

NASA Technical Reports Server (NTRS)

Su, Ching-Hua; Zhu, Shen; Li, Chao; Scripa, R.; Lehoczky, Sandra L.; Kim, Y. W.; Baird, J. K.; Lin, B.; Ban, Heng; Benmore, Chris

2003-01-01

The objectives of the project are to conduct ground-based experimental and theoretical research on the structural fluctuations and thermophysical properties of molten II-VI compounds to enhance the basic understanding of the existing flight experiments in microgravity materials science programs as well as to study the fundamental heterophase fluctuation phenomena in these melts by: 1) conducting neutron scattering analysis and measuring quantitatively the relevant thermophysical properties of the II-VI melts (such as viscosity, electrical conductivity, thermal diffusivity and density) as well as the relaxation characteristics of these properties to advance the understanding of the structural properties and the relaxation phenomena in these melts and 2) performing theoretical analyses on the melt systems to interpret the experimental results. All the facilities required for the experimental measurements have been procured, installed and tested. It has long been recognized that liquid Te presents a unique case having properties between those of metals and semiconductors. The electrical conductivity for Te melt increases rapidly at melting point, indicating a semiconductor-metal transition. Te melts comprise two features, which are usually considered to be incompatible with each other: covalently bound atoms and metallic-like behavior. Why do Te liquids show metallic behavior? is one of the long-standing issues in liquid metal physics. Since thermophysical properties are very sensitive to the structural variations of a melt, we have conducted extensive thermophysical measurements on Te melt.

Authenticity analyses of Rhizoma Paridis using barcoding coupled with high resolution melting (Bar-HRM) analysis to control its quality for medicinal plant product.

PubMed

Duan, Bao-Zhong; Wang, Ya-Ping; Fang, Hai-Lan; Xiong, Chao; Li, Xi-Wen; Wang, Ping; Chen, Shi-Lin

2018-01-01

Rhizoma Paridis (Chonglou) is a commonly used and precious traditional Chinese medicine. Paris polyphylla Smith var. yunnanensis (Franch.) Hand. -Mazz. and Paris polyphylla Smith var . chinensis (Franch.) Hara are the two main sources of Chonglou under the monograph of Rhizoma Paridis in Chinese Pharmacopoeia. In the local marketplace, however, this medicine is prone to be accidentally contaminated, deliberately substituted or admixed with other species that are similar to Rhizoma Paridis in shape and color. Consequently, these adulterations might compromise quality control and result in considerable health concerns for consumers. This study aims to develop a rapid and sensitive method for accurate identification of Rhizoma Paridis and its common adulterants. DNA barcoding coupled with high resolution melting analysis was applied in this research to distinguish Rhizoma Paridis from its adulteration. The internal transcribed spacer 2 (ITS2) barcode was selected for HRM analysis to produce standard melting profile of the selected species. DNA of the tested herbal medicines was isolated and their melting profiles were generated and compared with the standard melting profile of P. polyphylla var. chinensis . The results indicate that the ITS2 molecular regions coupled with HRM analysis can effectively differentiate nine herbal species, including two authentic origins of Chonglou and their seven common adulterants. Ten herbal medicines labeled "Chonglou" obtained from a local market were collected and identified with our methods, and their sequence information was analyzed to validate the accuracy of HRM analysis. DNA barcoding coupled with HRM analysis is a accurate, reliable, rapid, cost-effective and robust tool, which could contribute to the quality control of Rhizoma Paridis in the supply chain of the natural health product industry (NHP).

High-resolution melting analysis for noninvasive prenatal diagnosis of IVS-II-I (G-A) fetal DNA in minor beta-thalassemia mothers.

PubMed

Zafari, Mandana; Gill, Pooria; Kowsaryan, Mehrnoush; Alipour, Abbass; Banihashemi, Ali

2016-10-01

The high-resolution melting (HRM) technique is fast, effective and successful method for mutation detection. The aim of this study was to determine the sensitivity and specificity of the HRM method for detection of a paternally inherited mutation in a fetus as a noninvasive prenatal diagnosis of β-thalassemia. Genomic DNAs were prepared from 50 β-thalassemia minor couples whose pregnancy was at risk for homozygous β-thalassemia. Ten milliliters of the maternal blood from each pregnant woman were collected and after separating plasma stored at -80 °C until analysis. The extracted DNAs were analyzed by HRM real-time PCR for detection of IVS-II-I (G-A) as a paternally inherited mutation. The gold standard was the result of a chorionic villus sampling by a standard reverse dot blotting test. The sensitivity and specificity of HRM real-time PCR were 92.6% and 82.6%, respectively. Also, the positive and negative predictive values were 86.2% and 90.47%, respectively. HRM real-time PCR was a sensitive and specific method for determining the paternally inherited mutation in the fetus at risk with thalassemia major.

High-resolution melting-curve (HRM) analysis for C. meleagridis identification in stool samples.

PubMed

Chelbi, Hanen; Essid, Rym; Jelassi, Refka; Bouzekri, Nesrine; Zidi, Ines; Ben Salah, Hamza; Mrad, Ilhem; Ben Sghaier, Ines; Abdelmalek, Rym; Aissa, Sameh; Bouratbine, Aida; Aoun, Karim

2018-02-01

Cryptosporidiosis represents a major public health problem. This infection, caused by a protozoan parasite of the genus Cryptosporidium, has been reported worldwide as a frequent cause of diarrhoea. In the immunocompetent host, the typical watery diarrhea can be self-limiting. However, it is severe and chronic, in the immunocompromised host and may cause death. Cryptosporidium spp. are coccidians, which complete their life cycle in both humans and animals. The two species C. hominis and C. parvum are the major cause of human infection. Compared to studies on C. hominis and C. parvum, only a few studies have developed methods to identify C. meleagridis. To develop a new real time PCR-coupled High resolution melting assay allowing the detection for C. meleagridis, in addition of the other dominant species (C. hominis and C. parvum). The polymorphic sequence on the dihydrofolate reductase gene (DHFR) of three species was sequenced to design primers pair and establish a sensitive real-time PCR coupled to a high-resolution melting-curve (HRM) analysis method, allowing the detection of Cryptosporidium sp. and discrimination between three prevalent species in Tunisia. We analyzed a collection of 42 archived human isolates of the three studied species. Real-time PCR coupled to HRM assay allowed detection of Cryptosporidium, using the new designed primers, and basing on melting profile, we can distinguish C. meleagridis species in addition to C. parvum and C. hominis. We developed a qPCR-HRM assay that allows Cryptosporidium genotyping. This method is sensitive and able to distinguish three Cryptosporidium species. Copyright © 2017. Published by Elsevier Ltd.

Evaluation of Surface and Near-Surface Melt Characteristics on the Greenland Ice Sheet using MODIS and QuikSCAT Data

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Nghiem, Son V.; Schaaf, Crystal B.; DiGirolamo, Nicolo E.

2009-01-01

The Greenland Ice Sheet has been the focus of much attention recently because of increasing melt in response to regional climate warming. To improve our ability to measure surface melt, we use remote-sensing data products to study surface and near-surface melt characteristics of the Greenland Ice Sheet for the 2007 melt season when record melt extent and runoff occurred. Moderate Resolution Imaging Spectroradiometer (MODIS) daily land-surface temperature (LST), MODIS daily snow albedo, and a special diurnal melt product derived from QuikSCAT (QS) scatterometer data, are all effective in measuring the evolution of melt on the ice sheet. These daily products, produced from different parts of the electromagnetic spectrum, are sensitive to different geophysical features, though QS- and MODIS-derived melt generally show excellent correspondence when surface melt is present on the ice sheet. Values derived from the daily MODIS snow albedo product drop in response to melt, and change with apparent grain-size changes. For the 2007 melt season, the QS and MODIS LST products detect 862,769 square kilometers and 766,184 square kilometers of melt, respectively. The QS product detects about 11% greater melt extent than is detected by the MODIS LST product probably because QS is more sensitive to surface melt, and can detect subsurface melt. The consistency of the response of the different products demonstrates unequivocally that physically-meaningful melt/freeze boundaries can be detected. We have demonstrated that these products, used together, can improve the precision in mapping surface and near-surface melt extent on the Greenland Ice Sheet.

Sensitive power compensated scanning calorimeter for analysis of phase transformations in small samples

NASA Astrophysics Data System (ADS)

Lopeandía, A. F.; Cerdó, L. l.; Clavaguera-Mora, M. T.; Arana, Leonel R.; Jensen, K. F.; Muñoz, F. J.; Rodríguez-Viejo, J.

2005-06-01

We have designed and developed a sensitive scanning calorimeter for use with microgram or submicrogram, thin film, or powder samples. Semiconductor processing techniques are used to fabricate membrane based microreactors with a small heat capacity of the addenda, 120nJ/K at room temperature. At heating rates below 10K/s the heat released or absorbed by the sample during a given transformation is compensated through a resistive Pt heater by a digital controller so that the calorimeter works as a power compensated device. Its use and dynamic sensitivity is demonstrated by analyzing the melting behavior of thin films of indium and high density polyethylene. Melting enthalpies in the range of 40-250μJ for sample masses on the order of 1.5μg have been measured with accuracy better than 5% at heating rates ˜0.2K/s. The signal-to-noise ratio, limited by the electronic setup, is 200nW.

Novel Energetic Compounds Based on 3-Methyl-1,2,5-Oxadiazole 2-Oxide

NASA Astrophysics Data System (ADS)

Xu, Zhen; Yang, Hongwei; Cheng, Guangbin

2018-01-01

Two derivatives of 3-methyl-1,2,5-oxadiazole 2-oxide, (E) 4-methyl-1,2,5-oxadiazole-3-carboxaldehyde 5-oxide (2,4,6-trinitrophenyl)hydrazone (1) and 2,2,2-trinitroethyl 4-methyl-1,2,5-oxadiazole-3-carboxylate 5-oxide (2), were designed, synthesized, and fully characterized. The structures of the new compounds were confirmed by single-crystal X-ray analysis. Physicochemical and energetic properties including density, thermal stability, and sensitivity were investigated, and energetic properties (e.g., detonation velocities and detonation pressures) were calculated using EXPLO5 code. The results indicated that compound 1 exhibits positive heat of formation of 448.0 kJ mol-1 and acceptable sensitivities (IS: 20 J, FS: 280 N). In addition, compound 2 possesses low melting point (99.92°C), moderate decomposition temperature (183.67°C), good detonation performances (D: 8430 m s-1; P: 31.5 GPa), and lower sensitivities (IS: 18 J; FS: 220 N), which suggest 2 has the potential to be melt-cast explosive.

How do the radiative effects of springtime clouds and water vapor modulate the melt onset of Arctic sea ice?

NASA Astrophysics Data System (ADS)

Huang, Y.; Dong, X.; Xi, B.; Deng, Y.

2017-12-01

Earlier studies show that there is a strong positive correlation between the mean onset date of snow melt north of 70°N and the minimum Arctic sea ice extent (SIE) in September. Based on satellite records from 1980 to 2016, the September Arctic SIE minimum is most sensitive to the early melt onset over the Siberian Sea (73°-84°N, 90°-155°), which is defined as the area of focus (AOF) in this analysis. The day with melt onset exceeding 10% area of the AOF is marked as the initial melt date for a given year. With this definition, a strong positive correlation (r=0.59 at 99% confidence level) is found between the initial melt date over the AOF and the September SIE minimum over the Arctic. Daily anomalies of cloud and radiation properties are compared between six years with earliest initial melt dates (1990, 2012, 2007, 2003, 1991, 2016) and six years with latest initial melt dates (1996, 1984, 1983, 1982, 1987, 1992) using the NASA MERRA-2 reanalysis. Our results suggest that higher cloud water path (CWP) and precipitable water vapor (PWV) are clearly associated with early melt onset years through the period of mid-March to August. Major contrasts in CWP are found between the early and late onset years in a period of approximately 30 days prior to the onset to 30 days after the onset. As a result, the early melt onset years exhibit positive anomalies for downward longwave flux at the surface and negative anomalies for downward shortwave flux, shortwave cloud radiative effect (CRE) as well as net CRE. The negative net CRE is over-compensated by the positive longwave flux anomaly associated with elevated PWV, contributing to early melt onsets. The temporal evolution of CRE and PWV radiative effect during the entire melting season will be documented together with an analysis tracing the dynamical, mid-latitude origins of increased CWP and PWV prior to initial melt onsets.

Rapid differentiation of citrus Hop stunt viroid variants by real-time RT-PCR and high resolution melting analysis.

PubMed

Loconsole, Giuliana; Onelge, Nuket; Yokomi, Raymond K; Kubaa, Raied Abou; Savino, Vito; Saponari, Maria

2013-01-01

The RNA genome of pathogenic and non-pathogenic variants of citrus Hop stunt viroid (HSVd) differ by five to six nucleotides located within the variable (V) domain referred to as the "cachexia expression motif". Sensitive hosts such as mandarin and its hybrids are seriously affected by cachexia disease. Current methods to differentiate HSVd variants rely on lengthy greenhouse biological indexing on Parson's Special mandarin and/or direct nucleotide sequence analysis of amplicons from RT-PCR of HSVd-infected plants. Two independent high throughput assays to segregate HSVd variants by real-time RT-PCR and High-Resolution Melting Temperature (HRM) analysis were developed: one based on EVAGreen dye; the other based on TaqMan probes. Primers for both assays targeted three differentiating nucleotides in the V domain which separated HSVd variants into three clusters by distinct melting temperatures with a confidence level higher than 98%. The accuracy of the HRM assays were validated by nucleotide sequencing of representative samples within each HRM cluster and by testing 45 HSVd-infected field trees from California, Italy, Spain, Syria and Turkey. To our knowledge, this is the first report of a rapid and sensitive approach to detect and differentiate HSVd variants associated with different biological behaviors. Although, HSVd is found in several crops including citrus, cachexia variants are restricted to some citrus-growing areas, particularly the Mediterranean Region. Rapid diagnosis for cachexia and non-cachexia variants is, thus, important for the management of HSVd in citrus and reduces the need for bioindexing and sequencing analysis. Copyright © 2013 Elsevier Ltd. All rights reserved.

SNP-based differentiation of Phytophthora infestans clonal lineages using locked nucleic acid probes and high resolution melt analysis

USDA-ARS?s Scientific Manuscript database

Phytophthora infestans, the cause of the devastating late blight disease of potato and tomato, exhibits a clonal reproductive lifestyle in North America. Phenotypes such as fungicide sensitivity and host preference are conserved among individuals within clonal lineages, while substantial phenotypic ...

Rise in central west Greenland surface melt unprecedented over the last three centuries

NASA Astrophysics Data System (ADS)

Trusel, Luke; Das, Sarah; Osman, Matthew; Evans, Matthew; Smith, Ben; McConnell, Joe; Noël, Brice; van den Broeke, Michiel

2017-04-01

Greenland Ice Sheet surface melting has intensified and expanded over the last several decades and is now a leading component of ice sheet mass loss. Here, we constrain the multi-century temporal evolution of surface melt across central west Greenland by quantifying layers of refrozen melt within well-dated firn and ice cores collected in 2014 and 2015, as well as from a core collected in 2004. We find significant agreement among ice core, satellite, and regional climate model melt datasets over recent decades, confirming the fidelity of the ice core melt stratigraphy as a reliable record of past variability in the magnitude of surface melt. We also find a significant correlation between the melt records derived from our new 100-m GC-2015 core (2436 m.a.s.l.) and the older (2004) 150-m D5 core (2472 m.a.s.l.) located 50 km to the southeast. This agreement demonstrates the robustness of the ice core-derived melt histories and the potential for reconstructing regional melt evolution from a single site, despite local variability in melt percolation and refreeze processes. Our array of upper percolation zone cores reveals that although the overall frequency of melt at these sites has not increased, the intensification of melt over the last three decades is unprecedented within at least the last 365 years. Utilizing the regional climate model RACMO 2.3, we show that this melt intensification is a nonlinear response to warming summer air temperatures, thus underscoring the heightened sensitivity of this sector of Greenland to further climate warming. Finally, we examine spatial correlations between the ice core melt records and modeled melt fields across the ice sheet to assess the broader representation of each ice core record. This analysis reveals wide-ranging significant correlations, including to modeled meltwater runoff. As such, our ice core melt records may furthermore offer unique, observationally-constrained insights into past variability in ice sheet mass loss.

High resolution melting analysis for epidermal growth factor receptor mutations in formalin-fixed paraffin-embedded tissue and plasma free DNA from non-small cell lung cancer patients.

PubMed

Jing, Chang-Wen; Wang, Zhuo; Cao, Hai-Xia; Ma, Rong; Wu, Jian-Zhong

2014-01-01

The aim of the research was to explore a cost effective, fast, easy to perform, and sensitive method for epidermal growth factor receptor (EGFR) mutation testing. High resolution melting analysis (HRM) was introduced to evaluate the efficacy of the analysis for dectecting EGFR mutations in exons 18 to 21 using formalin-fixed paraffin-embedded (FFPE) tissues and plasma free DNA from 120 patients. The total EGFR mutation rate was 37.5% (45/120) detected by direct sequencing. There were 48 mutations in 120 FFPE tissues assessed by HRM. For plasma free DNA, the EGFR mutation rate was 25.8% (31/120). The sensitivity of HRM assays in FFPE samples was 100% by HRM. There was a low false-positive mutation rate but a high false-negative rate in plasma free DNA detected by HRM. Our results show that HRM analysis has the advantage of small tumor sample need. HRM applied with plasma free DNA showed a high false-negative rate but a low false-positive rate. Further research into appropriate methods and analysis needs to be performed before HRM for plasma free DNA could be accepted as an option in diagnostic or screening settings.

Detection of sdhB Gene Mutations in SDHI-Resistant Isolates of Botrytis cinerea Using High Resolution Melting (HRM) Analysis.

PubMed

Samaras, Anastasios; Madesis, Panagiotis; Karaoglanidis, George S

2016-01-01

Botrytis cinerea , is a high risk pathogen for fungicide resistance development. Pathogen' resistance to SDHIs is associated with several mutations in sdh gene. The diversity of mutations and their differential effect on cross-resistance patterns among SDHIs and the fitness of resistant strains necessitate the availability of a tool for their rapid identification. This study was initiated to develop and validate a high-resolution melting (HRM) analysis for the identification of P225H/F/L//T, N230I, and H272L/R/Y mutations. Based on the sequence of sdh B subunit of resistant and sensitive isolates, a universal primer pair was designed. The specificity of the HRM analysis primers was verified to ensure against the cross-reaction with other fungal species and its sensitivity was evaluated using concentrations of known amounts of mutant's DNA. The melting curve analysis generated nine distinct curve profiles, enabling the discrimination of all the four mutations located at codon 225, the N230I mutation, the three mutations located in codon 272, and the non-mutated isolates (isolates of wild-type sensitivity). Similar results were obtained when DNA was extracted directly from artificially inoculated strawberry fruit. The method was validated by monitoring the presence of sdh B mutations in samples of naturally infected strawberry fruits and stone fruit rootstock seedling plants showing damping-off symptoms. HRM analysis data were compared with a standard PIRA-PCR technique and an absolute agreement was observed suggesting that in both populations the H272R mutation was the predominant one, while H272Y, N230I, and P225H were detected in lower frequencies. The results of the study suggest that HRM analysis can be a useful tool for sensate, accurate, and rapid identification of several sdh B mutations in B. cinerea and it is expected to contribute in routine fungicide resistance monitoring or assessments of the effectiveness of anti-resistance strategies implemented in crops heavily treated with botryticides.

Detection of sdhB Gene Mutations in SDHI-Resistant Isolates of Botrytis cinerea Using High Resolution Melting (HRM) Analysis

PubMed Central

Samaras, Anastasios; Madesis, Panagiotis; Karaoglanidis, George S.

2016-01-01

Botrytis cinerea, is a high risk pathogen for fungicide resistance development. Pathogen’ resistance to SDHIs is associated with several mutations in sdh gene. The diversity of mutations and their differential effect on cross-resistance patterns among SDHIs and the fitness of resistant strains necessitate the availability of a tool for their rapid identification. This study was initiated to develop and validate a high-resolution melting (HRM) analysis for the identification of P225H/F/L//T, N230I, and H272L/R/Y mutations. Based on the sequence of sdhB subunit of resistant and sensitive isolates, a universal primer pair was designed. The specificity of the HRM analysis primers was verified to ensure against the cross-reaction with other fungal species and its sensitivity was evaluated using concentrations of known amounts of mutant’s DNA. The melting curve analysis generated nine distinct curve profiles, enabling the discrimination of all the four mutations located at codon 225, the N230I mutation, the three mutations located in codon 272, and the non-mutated isolates (isolates of wild-type sensitivity). Similar results were obtained when DNA was extracted directly from artificially inoculated strawberry fruit. The method was validated by monitoring the presence of sdhB mutations in samples of naturally infected strawberry fruits and stone fruit rootstock seedling plants showing damping-off symptoms. HRM analysis data were compared with a standard PIRA–PCR technique and an absolute agreement was observed suggesting that in both populations the H272R mutation was the predominant one, while H272Y, N230I, and P225H were detected in lower frequencies. The results of the study suggest that HRM analysis can be a useful tool for sensate, accurate, and rapid identification of several sdhB mutations in B. cinerea and it is expected to contribute in routine fungicide resistance monitoring or assessments of the effectiveness of anti-resistance strategies implemented in crops heavily treated with botryticides. PMID:27895633

High-resolution melting (HRM) re-analysis of a polyposis patients cohort reveals previously undetected heterozygous and mosaic APC gene mutations.

PubMed

Out, Astrid A; van Minderhout, Ivonne J H M; van der Stoep, Nienke; van Bommel, Lysette S R; Kluijt, Irma; Aalfs, Cora; Voorendt, Marsha; Vossen, Rolf H A M; Nielsen, Maartje; Vasen, Hans F A; Morreau, Hans; Devilee, Peter; Tops, Carli M J; Hes, Frederik J

2015-06-01

Familial adenomatous polyposis is most frequently caused by pathogenic variants in either the APC gene or the MUTYH gene. The detection rate of pathogenic variants depends on the severity of the phenotype and sensitivity of the screening method, including sensitivity for mosaic variants. For 171 patients with multiple colorectal polyps without previously detectable pathogenic variant, APC was reanalyzed in leukocyte DNA by one uniform technique: high-resolution melting (HRM) analysis. Serial dilution of heterozygous DNA resulted in a lowest detectable allelic fraction of 6% for the majority of variants. HRM analysis and subsequent sequencing detected pathogenic fully heterozygous APC variants in 10 (6%) of the patients and pathogenic mosaic variants in 2 (1%). All these variants were previously missed by various conventional scanning methods. In parallel, HRM APC scanning was applied to DNA isolated from polyp tissue of two additional patients with apparently sporadic polyposis and without detectable pathogenic APC variant in leukocyte DNA. In both patients a pathogenic mosaic APC variant was present in multiple polyps. The detection of pathogenic APC variants in 7% of the patients, including mosaics, illustrates the usefulness of a complete APC gene reanalysis of previously tested patients, by a supplementary scanning method. HRM is a sensitive and fast pre-screening method for reliable detection of heterozygous and mosaic variants, which can be applied to leukocyte and polyp derived DNA.

Sensitivity of an Antarctic Ice Sheet Model to Sub-Ice-Shelf Melting

NASA Astrophysics Data System (ADS)

Lipscomb, W. H.; Leguy, G.; Urban, N. M.; Berdahl, M.

2017-12-01

Theory and observations suggest that marine-based sectors of the Antarctic ice sheet could retreat rapidly under ocean warming and increased melting beneath ice shelves. Numerical models of marine ice sheets vary widely in sensitivity, depending on grid resolution and the parameterization of key processes (e.g., calving and hydrofracture). Here we study the sensitivity of the Antarctic ice sheet to ocean warming and sub-shelf melting in standalone simulations of the Community Ice Sheet Model (CISM). Melt rates either are prescribed based on observations and high-resolution ocean model output, or are derived from a plume model forced by idealized ocean temperature profiles. In CISM, we vary the model resolution (between 1 and 8 km), Stokes approximation (shallow-shelf, depth-integrated higher-order, or 3D higher-order) and calving scheme to create an ensemble of plausible responses to sub-shelf melting. This work supports a broader goal of building statistical and reduced models that can translate large-scale Earth-system model projections to changes in Antarctic ocean temperatures and ice sheet discharge, thus better quantifying uncertainty in Antarctic-sourced sea-level rise.

Process modelling for Space Station experiments

NASA Technical Reports Server (NTRS)

Alexander, J. Iwan D.; Rosenberger, Franz; Nadarajah, Arunan; Ouazzani, Jalil; Amiroudine, Sakir

1990-01-01

Examined here is the sensitivity of a variety of space experiments to residual accelerations. In all the cases discussed the sensitivity is related to the dynamic response of a fluid. In some cases the sensitivity can be defined by the magnitude of the response of the velocity field. This response may involve motion of the fluid associated with internal density gradients, or the motion of a free liquid surface. For fluids with internal density gradients, the type of acceleration to which the experiment is sensitive will depend on whether buoyancy driven convection must be small in comparison to other types of fluid motion, or fluid motion must be suppressed or eliminated. In the latter case, the experiments are sensitive to steady and low frequency accelerations. For experiments such as the directional solidification of melts with two or more components, determination of the velocity response alone is insufficient to assess the sensitivity. The effect of the velocity on the composition and temperature field must be considered, particularly in the vicinity of the melt-crystal interface. As far as the response to transient disturbances is concerned, the sensitivity is determined by both the magnitude and frequency of the acceleration and the characteristic momentum and solute diffusion times. The microgravity environment, a numerical analysis of low gravity tolerance of the Bridgman-Stockbarger technique, and modeling crystal growth by physical vapor transport in closed ampoules are discussed.

Methods to Increase the Sensitivity of High Resolution Melting Single Nucleotide Polymorphism Genotyping in Malaria.

PubMed

Daniels, Rachel; Hamilton, Elizabeth J; Durfee, Katelyn; Ndiaye, Daouda; Wirth, Dyann F; Hartl, Daniel L; Volkman, Sarah K

2015-11-10

Despite decades of eradication efforts, malaria remains a global burden. Recent renewed interest in regional elimination and global eradication has been accompanied by increased genomic information about Plasmodium parasite species responsible for malaria, including characteristics of geographical populations as well as variations associated with reduced susceptibility to anti-malarial drugs. One common genetic variation, single-nucleotide polymorphisms (SNPs), offers attractive targets for parasite genotyping. These markers are useful not only for tracking drug resistance markers but also for tracking parasite populations using markers not under drug or other selective pressures. SNP genotyping methods offer the ability to track drug resistance as well as to fingerprint individual parasites for population surveillance, particularly in response to malaria control efforts in regions nearing elimination status. While informative SNPs have been identified that are agnostic to specific genotyping technologies, high-resolution melting (HRM) analysis is particularly suited to field-based studies. Compared to standard fluorescent-probe based methods that require individual SNPs in a single labeled probe and offer at best 10% sensitivity to detect SNPs in samples that contain multiple genomes (polygenomic), HRM offers 2-5% sensitivity. Modifications to HRM, such as blocked probes and asymmetric primer concentrations as well as optimization of amplification annealing temperatures to bias PCR towards amplification of the minor allele, further increase the sensitivity of HRM. While the sensitivity improvement depends on the specific assay, we have increased detection sensitivities to less than 1% of the minor allele. In regions approaching malaria eradication, early detection of emerging or imported drug resistance is essential for prompt response. Similarly, the ability to detect polygenomic infections and differentiate imported parasite types from cryptic local reservoirs can inform control programs. This manuscript describes modifications to high resolution melting technology that further increase its sensitivity to identify polygenomic infections in patient samples.

High-Resolution Melting Analysis for Rapid Detection of Sequence Type 131 Escherichia coli.

PubMed

Harrison, Lucas B; Hanson, Nancy D

2017-06-01

Escherichia coli isolates belonging to the sequence type 131 (ST131) clonal complex have been associated with the global distribution of fluoroquinolone and β-lactam resistance. Whole-genome sequencing and multilocus sequence typing identify sequence type but are expensive when evaluating large numbers of samples. This study was designed to develop a cost-effective screening tool using high-resolution melting (HRM) analysis to differentiate ST131 from non-ST131 E. coli in large sample populations in the absence of sequence analysis. The method was optimized using DNA from 12 E. coli isolates. Singleplex PCR was performed using 10 ng of DNA, Type-it HRM buffer, and multilocus sequence typing primers and was followed by multiplex PCR. The amplicon sizes ranged from 630 to 737 bp. Melt temperature peaks were determined by performing HRM analysis at 0.1°C resolution from 50 to 95°C on a Rotor-Gene Q 5-plex HRM system. Derivative melt curves were compared between sequence types and analyzed by principal component analysis. A blinded study of 191 E. coli isolates of ST131 and unknown sequence types validated this methodology. This methodology returned 99.2% specificity (124 true negatives and 1 false positive) and 100% sensitivity (66 true positives and 0 false negatives). This HRM methodology distinguishes ST131 from non-ST131 E. coli without sequence analysis. The analysis can be accomplished in about 3 h in any laboratory with an HRM-capable instrument and principal component analysis software. Therefore, this assay is a fast and cost-effective alternative to sequencing-based ST131 identification. Copyright © 2017 Harrison and Hanson.

Classification of Fowl Adenovirus Serotypes by Use of High-Resolution Melting-Curve Analysis of the Hexon Gene Region▿

PubMed Central

Steer, Penelope A.; Kirkpatrick, Naomi C.; O'Rourke, Denise; Noormohammadi, Amir H.

2009-01-01

Identification of fowl adenovirus (FAdV) serotypes is of importance in epidemiological studies of disease outbreaks and the adoption of vaccination strategies. In this study, real-time PCR and subsequent high-resolution melting (HRM)-curve analysis of three regions of the hexon gene were developed and assessed for their potential in differentiating 12 FAdV reference serotypes. The results were compared to previously described PCR and restriction enzyme analyses of the hexon gene. Both HRM-curve analysis of a 191-bp region of the hexon gene and restriction enzyme analysis failed to distinguish a number of serotypes used in this study. In addition, PCR of the region spanning nucleotides (nt) 144 to 1040 failed to amplify FAdV-5 in sufficient quantities for further analysis. However, HRM-curve analysis of the region spanning nt 301 to 890 proved a sensitive and specific method of differentiating all 12 serotypes. All melt curves were highly reproducible, and replicates of each serotype were correctly genotyped with a mean confidence value of more than 99% using normalized HRM curves. Sequencing analysis revealed that each profile was related to a unique sequence, with some sequences sharing greater than 94% identity. Melting-curve profiles were found to be related mainly to GC composition and distribution throughout the amplicons, regardless of sequence identity. The results presented in this study show that the closed-tube method of PCR and HRM-curve analysis provides an accurate, rapid, and robust genotyping technique for the identification of FAdV serotypes and can be used as a model for developing genotyping techniques for other pathogens. PMID:19036935

Processes controlling surface, bottom and lateral melt of Arctic sea ice in a state of the art sea ice model.

PubMed

Tsamados, Michel; Feltham, Daniel; Petty, Alek; Schroeder, David; Flocco, Daniela

2015-10-13

We present a modelling study of processes controlling the summer melt of the Arctic sea ice cover. We perform a sensitivity study and focus our interest on the thermodynamics at the ice-atmosphere and ice-ocean interfaces. We use the Los Alamos community sea ice model CICE, and additionally implement and test three new parametrization schemes: (i) a prognostic mixed layer; (ii) a three equation boundary condition for the salt and heat flux at the ice-ocean interface; and (iii) a new lateral melt parametrization. Recent additions to the CICE model are also tested, including explicit melt ponds, a form drag parametrization and a halodynamic brine drainage scheme. The various sea ice parametrizations tested in this sensitivity study introduce a wide spread in the simulated sea ice characteristics. For each simulation, the total melt is decomposed into its surface, bottom and lateral melt components to assess the processes driving melt and how this varies regionally and temporally. Because this study quantifies the relative importance of several processes in driving the summer melt of sea ice, this work can serve as a guide for future research priorities. © 2015 The Author(s).

Rapid detection of pathological mutations and deletions of the haemoglobin beta gene (HBB) by High Resolution Melting (HRM) analysis and Gene Ratio Analysis Copy Enumeration PCR (GRACE-PCR).

PubMed

Turner, Andrew; Sasse, Jurgen; Varadi, Aniko

2016-10-19

Inherited disorders of haemoglobin are the world's most common genetic diseases, resulting in significant morbidity and mortality. The large number of mutations associated with the haemoglobin beta gene (HBB) makes gene scanning by High Resolution Melting (HRM) PCR an attractive diagnostic approach. However, existing HRM-PCR assays are not able to detect all common point mutations and have only a very limited ability to detect larger gene rearrangements. The aim of the current study was to develop a HBB assay, which can be used as a screening test in highly heterogeneous populations, for detection of both point mutations and larger gene rearrangements. The assay is based on a combination of conventional HRM-PCR and a novel Gene Ratio Analysis Copy Enumeration (GRACE) PCR method. HRM-PCR was extensively optimised, which included the use of an unlabelled probe and incorporation of universal bases into primers to prevent interference from common non-pathological polymorphisms. GRACE-PCR was employed to determine HBB gene copy numbers relative to a reference gene using melt curve analysis to detect rearrangements in the HBB gene. The performance of the assay was evaluated by analysing 410 samples. A total of 44 distinct pathological genotypes were detected. In comparison with reference methods, the assay has a sensitivity of 100 % and a specificity of 98 %. We have developed an assay that detects both point mutations and larger rearrangements of the HBB gene. This assay is quick, sensitive, specific and cost effective making it suitable as an initial screening test that can be used for highly heterogeneous cohorts.

The Microwave Properties of Simulated Melting Precipitation Particles: Sensitivity to Initial Melting

NASA Technical Reports Server (NTRS)

Johnson, B. T.; Olson, W. S.; Skofronick-Jackson, G.

2016-01-01

A simplified approach is presented for assessing the microwave response to the initial melting of realistically shaped ice particles. This paper is divided into two parts: (1) a description of the Single Particle Melting Model (SPMM), a heuristic melting simulation for ice-phase precipitation particles of any shape or size (SPMM is applied to two simulated aggregate snow particles, simulating melting up to 0.15 melt fraction by mass), and (2) the computation of the single-particle microwave scattering and extinction properties of these hydrometeors, using the discrete dipole approximation (via DDSCAT), at the following selected frequencies: 13.4, 35.6, and 94.0GHz for radar applications and 89, 165.0, and 183.31GHz for radiometer applications. These selected frequencies are consistent with current microwave remote-sensing platforms, such as CloudSat and the Global Precipitation Measurement (GPM) mission. Comparisons with calculations using variable-density spheres indicate significant deviations in scattering and extinction properties throughout the initial range of melting (liquid volume fractions less than 0.15). Integration of the single-particle properties over an exponential particle size distribution provides additional insight into idealized radar reflectivity and passive microwave brightness temperature sensitivity to variations in size/mass, shape, melt fraction, and particle orientation.

An assessment of the CORCON-MOD3 code. Part 1: Thermal-hydraulic calculations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Strizhov, V.; Kanukova, V.; Vinogradova, T.

1996-09-01

This report deals with the subject of CORCON-Mod3 code validation (thermal-hydraulic modeling capability only) based on MCCI (molten core concrete interaction) experiments conducted under different programs in the past decade. Thermal-hydraulic calculations (i.e., concrete ablation, melt temperature, melt energy, concrete temperature, and condensible and non-condensible gas generation) were performed with the code, and compared with the data from 15 experiments, conducted at different scales using both simulant (metallic and oxidic) and prototypic melt materials, using different concrete types, and with and without an overlying water pool. Sensitivity studies were performed in a few cases involving, for example, heat transfer frommore » melt to concrete, condensed phase chemistry, etc. Further, special analysis was performed using the ACE L8 experimental data to illustrate the differences between the experimental and the reactor conditions, and to demonstrate that with proper corrections made to the code, the calculated results were in better agreement with the experimental data. Generally, in the case of dry cavity and metallic melts, CORCON-Mod3 thermal-hydraulic calculations were in good agreement with the test data. For oxidic melts in a dry cavity, uncertainties in heat transfer models played an important role for two melt configurations--a stratified geometry with segregated metal and oxide layers, and a heterogeneous mixture. Some discrepancies in the gas release data were noted in a few cases.« less

The geometry and volume of melt beneath Ethiopia

NASA Astrophysics Data System (ADS)

Kendall, J. M.; Hammond, J. O. S.

2016-12-01

A range of seismic measurements can be used to map melt distribution in the crust and uppermost mantle. These include seismic P- and S-wave velocities derived from surface- and body-wave tomography, Vp/Vs ratios obtained from receiver functions, and estimates of seismic anisotropy and attenuation. The most obvious melt parameter that seismic data might be sensitive to is volume fraction. However, such data are more sensitive to the aspect ratio of melt inclusions, which is controlled by the melt wetting angle or in other words the shape of the melt inclusion. To better understand this we perform numerical modelling, varying the shape and amount of melt, to show how various seismic phases are effected by melt. To consider the effects on seismic anisotropy we assume that the melt can be stored in pockets of melt that are either horizontally or vertically aligned (e.g., sills versus dykes). We then consider a range of seismic observations from the rifting environment of Ethiopia. Recent studies of P- and S-wave tomography, Rayleigh and Love waves, and Pn or wide angle P-wave refractions provide provide complimentary constraints on melt volume, orientation and inclusion aspect ratio. Furthermore, receiver functions and shear-wave splitting in body waves show strong anisotropy in this region and can be used to constrain the strike of vertically-aligned partial melt. We show that melt in the mantle beneath Ethiopia is likely stored in low aspect ratio disk-like inclusions, suggesting melt is not in textural equilibrium. We estimate that 2-7% vertically aligned melt is stored beneath the Main Ethiopian Rift, >6% horizontally and vertically aligned melt is stored beneath the Afar-region of the Red Sea Rift and 1-6% horizontally aligned melt is stored beneath the Danakil microplate. This supports ideas of strong shear-derived segregation of melt in narrow parts of the rift and large volumes of melt beneath Afar.

High-resolution melting analysis of gyrA codon 84 and grlA codon 80 mutations conferring resistance to fluoroquinolones in Staphylococcus pseudintermedius isolates from canine clinical samples.

PubMed

Loiacono, Monica; Martino, Piera A; Albonico, Francesca; Dell'Orco, Francesca; Ferretti, Manuela; Zanzani, Sergio; Mortarino, Michele

2017-09-01

Staphylococcus pseudintermedius is an opportunistic pathogen of dogs and cats. A high-resolution melting analysis (HRMA) protocol was designed and tested on 42 clinical isolates with known fluoroquinolone (FQ) susceptibility and gyrA codon 84 and grlA codon 80 mutation status. The HRMA approach was able to discriminate between FQ-sensitive and FQ-resistant strains and confirmed previous reports that the main mutation site associated with FQ resistance in S. pseudintermedius is located at position 251 (Ser84Leu) of gyrA. Routine, HRMA-based FQ susceptibility profiles may be a valuable tool to guide therapy. The FQ resistance-predictive power of the assay should be tested in a significantly larger number of isolates.

Glacier Melt Detection in Complex Terrain Using New AMSR-E Calibrated Enhanced Daily EASE-Grid 2.0 Brightness Temperature (CETB) Earth System Data Record

NASA Astrophysics Data System (ADS)

Ramage, J. M.; Brodzik, M. J.; Hardman, M.

2016-12-01

Passive microwave (PM) 18 GHz and 36 GHz horizontally- and vertically-polarized brightness temperatures (Tb) channels from the Advanced Microwave Scanning Radiometer for EOS (AMSR-E) have been important sources of information about snow melt status in glacial environments, particularly at high latitudes. PM data are sensitive to the changes in near-surface liquid water that accompany melt onset, melt intensification, and refreezing. Overpasses are frequent enough that in most areas multiple (2-8) observations per day are possible, yielding the potential for determining the dynamic state of the snow pack during transition seasons. AMSR-E Tb data have been used effectively to determine melt onset and melt intensification using daily Tb and diurnal amplitude variation (DAV) thresholds. Due to mixed pixels in historically coarse spatial resolution Tb data, melt analysis has been impractical in ice-marginal zones where pixels may be only fractionally snow/ice covered, and in areas where the glacier is near large bodies of water: even small regions of open water in a pixel severely impact the microwave signal. We use the new enhanced-resolution Calibrated Passive Microwave Daily EASE-Grid 2.0 Brightness Temperature (CETB) Earth System Data Record product's twice daily obserations to test and update existing snow melt algorithms by determining appropriate melt thresholds for both Tb and DAV for the CETB 18 and 36 GHz channels. We use the enhanced resolution data to evaluate melt characteristics along glacier margins and melt transition zones during the melt seasons in locations spanning a wide range of melt scenarios, including the Patagonian Andes, the Alaskan Coast Range, and the Russian High Arctic icecaps. We quantify how improvement of spatial resolution from the original 12.5 - 25 km-scale pixels to the enhanced resolution of 3.125 - 6.25 km improves the ability to evaluate melt timing across boundaries and transition zones in diverse glacial environments.

Rapid detection of Echinococcus species by a high-resolution melting (HRM) approach.

PubMed

Santos, Guilherme Brzoskowski; Espínola, Sergio Martín; Ferreira, Henrique Bunselmeyer; Margis, Rogerio; Zaha, Arnaldo

2013-11-14

High-resolution melting (HRM) provides a low-cost, fast and sensitive scanning method that allows the detection of DNA sequence variations in a single step, which makes it appropriate for application in parasite identification and genotyping. The aim of this work was to implement an HRM-PCR assay targeting part of the mitochondrial cox1 gene to achieve an accurate and fast method for Echinococcus spp. differentiation. For melting analysis, a total of 107 samples from seven species were used in this study. The species analyzed included Echinococcus granulosus (n = 41) and Echinococcus ortleppi (n = 50) from bovine, Echinococcus vogeli (n = 2) from paca, Echinococcus oligarthra (n = 3) from agouti, Echinococcus multilocularis (n = 6) from monkey and Echinococcus canadensis (n = 2) and Taenia hydatigena (n = 3) from pig. DNA extraction was performed, and a 444-bp fragment of the cox1 gene was amplified. Two approaches were used, one based on HRM analysis, and a second using SYBR Green Tm-based. In the HRM analysis, a specific profile for each species was observed. Although some species exhibited almost the same melting temperature (Tm) value, the HRM profiles could be clearly discriminated. The SYBR Green Tm-based analysis showed differences between E. granulosus and E. ortleppi and between E. vogeli and E. oligarthra. In this work, we report the implementation of HRM analysis to differentiate species of the genus Echinococcus using part of the mitochondrial gene cox1. This method may be also potentially applied to identify other species belonging to the Taeniidae family.

Rapid detection of Echinococcus species by a high-resolution melting (HRM) approach

PubMed Central

2013-01-01

Background High-resolution melting (HRM) provides a low-cost, fast and sensitive scanning method that allows the detection of DNA sequence variations in a single step, which makes it appropriate for application in parasite identification and genotyping. The aim of this work was to implement an HRM-PCR assay targeting part of the mitochondrial cox1 gene to achieve an accurate and fast method for Echinococcus spp. differentiation. Findings For melting analysis, a total of 107 samples from seven species were used in this study. The species analyzed included Echinococcus granulosus (n = 41) and Echinococcus ortleppi (n = 50) from bovine, Echinococcus vogeli (n = 2) from paca, Echinococcus oligarthra (n = 3) from agouti, Echinococcus multilocularis (n = 6) from monkey and Echinococcus canadensis (n = 2) and Taenia hydatigena (n = 3) from pig. DNA extraction was performed, and a 444-bp fragment of the cox1 gene was amplified. Two approaches were used, one based on HRM analysis, and a second using SYBR Green Tm-based. In the HRM analysis, a specific profile for each species was observed. Although some species exhibited almost the same melting temperature (Tm) value, the HRM profiles could be clearly discriminated. The SYBR Green Tm-based analysis showed differences between E. granulosus and E. ortleppi and between E. vogeli and E. oligarthra. Conclusions In this work, we report the implementation of HRM analysis to differentiate species of the genus Echinococcus using part of the mitochondrial gene cox1. This method may be also potentially applied to identify other species belonging to the Taeniidae family. PMID:24517106

Binary Colloidal Alloy Test-5: Three-Dimensional Melt

NASA Technical Reports Server (NTRS)

Yodh, Arjun G.

2008-01-01

Binary Colloidal Alloy Test - 5: Three-Dimensional Melt (BCAT-5-3DMelt) photographs initially randomized colloidal samples in microgravity to determine their resulting structure over time. BCAT-5-3D-Melt will allow the scientists to capture the kinetics (evolution) of their samples, as well as the final equilibrium state of each sample. BCAT-5-3D-Melt will look at the mechanisms of melting using three-dimensional temperature sensitive colloidal crystals. Results will help scientists develop fundamental physics concepts previously shadowed by the effects of gravity.

A comparison of PCR assays for beak and feather disease virus and high resolution melt (HRM) curve analysis of replicase associated protein and capsid genes.

PubMed

Das, Shubhagata; Sarker, Subir; Ghorashi, Seyed Ali; Forwood, Jade K; Raidal, Shane R

2016-11-01

Beak and feather disease virus (BFDV) threatens a wide range of endangered psittacine birds worldwide. In this study, we assessed a novel PCR assay and genetic screening method using high-resolution melt (HRM) curve analysis for BFDV targeting the capsid (Cap) gene (HRM-Cap) alongside conventional PCR detection as well as a PCR method that targets a much smaller fragment of the virus genome in the replicase initiator protein (Rep) gene (HRM-Rep). Limits of detection, sensitivity, specificity and discriminatory power for differentiating BFDV sequences were compared. HRM-Cap had a high positive predictive value and could readily differentiate between a reference genotype and 17 other diverse BFDV genomes with more discriminatory power (genotype confidence percentage) than HRM-Rep. Melt curve profiles generated by HRM-Cap correlated with unique DNA sequence profiles for each individual test genome. The limit of detection of HRM-Cap was lower (2×10 -5 ng/reaction or 48 viral copies) than that for both HRM-Rep and conventional BFDV PCR which had similar sensitivity (2×10 -6 ng or 13 viral copies/reaction). However, when used in a diagnostic setting with 348 clinical samples there was strong agreement between HRM-Cap and conventional PCR (kappa=0.87, P<0.01, 98% specificity) and HRM-Cap demonstrated higher specificity (99.9%) than HRM-Rep (80.3%). Copyright © 2016 Elsevier B.V. All rights reserved.

Sensitivity analysis of sea level rise contribution depending on external forcing: A case study of Victoria Land, East Antarctica.

NASA Astrophysics Data System (ADS)

Park, I. W.; Lee, S. H.; Lee, W. S.; Lee, C. K.; Lee, K. K.

2017-12-01

As global mean temperature increases, it affects increase in polar glacier melt and thermal expansion of sea, which contributed to global sea level rise. Unlike large sea level rise contributors in Western Antarctica (e. g. Pine island glacier, Thwaites glacier), glaciers in East Antarctica shows relatively stable and slow ice velocity. However, recent calving events related to increase of supraglacier lake in Nansen ice shelf arouse the questions in regards to future evolution of ice dynamics at Victoria Land, East Antarctica. Here, using Ice Sheet System Model (ISSM), a series of numerical simulations were carried out to investigate ice dynamics evolution (grounding line migration, ice velocity) and sea level rise contribution in response to external forcing conditions (surface mass balance, floating ice melting rate, and ice front retreat). In this study, we used control method to set ice dynamic properties (ice rigidity and friction coefficient) with shallow shelf approximation model and check each external forcing conditions contributing to sea level change. Before 50-year transient simulations were conducted based on changing surface mass balance, floating ice melting rate, and ice front retreat of Drygalski ice tongue and Nansen ice shelf, relaxation was performed for 10 years to reduce non-physical undulation and it was used as initial condition. The simulation results showed that sea level rise contribution were expected to be much less compared to other fast glaciers. Floating ice melting rate was most sensitive parameter to sea level rise, while ice front retreat of Drygalski tongue was negligible. The regional model will be further updated utilizing ice radar topography and measured floating ice melting rate.

The effect of an electric field on the morphological stability of the crystal-melt interface of a binary alloy. III - Weakly nonlinear theory

NASA Technical Reports Server (NTRS)

Wheeler, A. A.; Mcfadden, G. B.; Coriell, S. R.; Hurle, D. T. J.

1990-01-01

The effect of a constant electric current on the crystal-melt interface morphology during directional solidification at constant velocity of a binary alloy is considered. A linear temperature field is assumed, and thermoelectric effects and Joule heating are neglected; electromigration and differing electrical conductivities of crystal and melt are taken into account. A two-dimensional weakly nonlinear analysis is carried out to third order in the interface amplitude, resulting in a cubic amplitude equation that describes whether the bifurcation from the planar state is supercritical or subcritical. For wavelengths corresponding to the most dangerous mode of linear theory, the demarcation between supercritical and subcritical behavior is calculated as a function of processing conditions and material parameters. The bifurcation behavior is a sensitive function of the magnitude and direction of the electric current and of the electrical conductivity ratio.

Experimental platform utilising melting curve technology for detection of mutations in Mycobacterium tuberculosis isolates.

PubMed

Broda, Agnieszka; Nikolayevskyy, Vlad; Casali, Nicki; Khan, Huma; Bowker, Richard; Blackwell, Gemma; Patel, Bhakti; Hume, James; Hussain, Waqar; Drobniewski, Francis

2018-04-20

Tuberculosis (TB) remains one of the most deadly infections with approximately a quarter of cases not being identified and/or treated mainly due to a lack of resources. Rapid detection of TB or drug-resistant TB enables timely adequate treatment and is a cornerstone of effective TB management. We evaluated the analytical performance of a single-tube assay for multidrug-resistant TB (MDR-TB) on an experimental platform utilising RT-PCR and melting curve analysis that could potentially be operated as a point-of-care (PoC) test in resource-constrained settings with a high burden of TB. Firstly, we developed and evaluated the prototype MDR-TB assay using specimens extracted from well-characterised TB isolates with a variety of distinct rifampicin and isoniazid resistance conferring mutations and nontuberculous Mycobacteria (NTM) strains. Secondly, we validated the experimental platform using 98 clinical sputum samples from pulmonary TB patients collected in high MDR-TB settings. The sensitivity of the platform for TB detection in clinical specimens was 75% for smear-negative and 92.6% for smear-positive sputum samples. The sensitivity of detection for rifampicin and isoniazid resistance was 88.9 and 96.0% and specificity was 87.5 and 100%, respectively. Observed limitations in sensitivity and specificity could be resolved by adjusting the sample preparation methodology and melting curve recognition algorithm. Overall technology could be considered a promising PoC methodology especially in resource-constrained settings based on its combined accuracy, convenience, simplicity, speed, and cost characteristics.

Strong sensitivity of Pine Island ice-shelf melting to climatic variability.

PubMed

Dutrieux, Pierre; De Rydt, Jan; Jenkins, Adrian; Holland, Paul R; Ha, Ho Kyung; Lee, Sang Hoon; Steig, Eric J; Ding, Qinghua; Abrahamsen, E Povl; Schröder, Michael

2014-01-10

Pine Island Glacier has thinned and accelerated over recent decades, significantly contributing to global sea-level rise. Increased oceanic melting of its ice shelf is thought to have triggered those changes. Observations and numerical modeling reveal large fluctuations in the ocean heat available in the adjacent bay and enhanced sensitivity of ice-shelf melting to water temperatures at intermediate depth, as a seabed ridge blocks the deepest and warmest waters from reaching the thickest ice. Oceanic melting decreased by 50% between January 2010 and 2012, with ocean conditions in 2012 partly attributable to atmospheric forcing associated with a strong La Niña event. Both atmospheric variability and local ice shelf and seabed geometry play fundamental roles in determining the response of the Antarctic Ice Sheet to climate.

High Resolution Melting Analysis for JAK2 Exon 14 and Exon 12 Mutations

PubMed Central

Rapado, Inmaculada; Grande, Silvia; Albizua, Enriqueta; Ayala, Rosa; Hernández, José-Angel; Gallardo, Miguel; Gilsanz, Florinda; Martinez-Lopez, Joaquin

2009-01-01

JAK2 mutations are important criteria for the diagnosis of Philadelphia chromosome-negative myeloproliferative neoplasms. We aimed to assess JAK2 exon 14 and exon 12 mutations by high-resolution melting (HRM) analysis, which allows variation screening. The exon 14 analysis included 163 patients with polycythemia vera, secondary erythrocytoses, essential thrombocythemia, or secondary thrombocytoses, and 126 healthy subjects. The study of exon 12 included 40 JAK2 V617F-negative patients (nine of which had polycythemia vera, and 31 with splanchnic vein thrombosis) and 30 healthy subjects. HRM analyses of JAK2 exons 14 and 12 gave analytical sensitivities near 1% and both intra- and interday coefficients of variation of less than 1%. For HRM analysis of JAK2 exon 14 in polycythemia vera and essential thrombocythemia, clinical sensitivities were 93.5% and 67.9%, clinical specificities were 98.8% and 97.0%, positive predictive values were 93.5% and 79.2%, and negative predictive values were 98.8% and 94.6, respectively. Correlations were observed between the results from HRM and three commonly used analytical methods. The JAK2 exon 12 HRM results agreed completely with those from sequencing analysis, and the three mutations in exon 12 were detected by both methods. Hence, HRM analysis of exons 14 and 12 in JAK2 shows better diagnostic values than three other routinely used methods against which it was compared. In addition, HRM analysis has the advantage of detecting unknown mutations. PMID:19225136

Assessment for Melting Temperature Measurement of Nucleic Acid by HRM.

PubMed

Wang, Jing; Pan, Xiaoming; Liang, Xingguo

2016-01-01

High resolution melting (HRM), with a high sensitivity to distinguish the nucleic acid species with small variations, has been widely applied in the mutation scanning, methylation analysis, and genotyping. For the aim of extending HRM for the evaluation of thermal stability of nucleic acid secondary structures on sequence dependence, we investigated effects of the dye of EvaGreen, metal ions, and impurities (such as dNTPs) on melting temperature ( T m ) measurement by HRM. The accuracy of HRM was assessed as compared with UV melting method, and little difference between the two methods was found when the DNA T m was higher than 40°C. Both insufficiency and excessiveness of EvaGreen were found to give rise to a little bit higher T m , showing that the proportion of dye should be considered for precise T m measurement of nucleic acids. Finally, HRM method was also successfully used to measure T m s of DNA triplex, hairpin, and RNA duplex. In conclusion, HRM can be applied in the evaluation of thermal stability of nucleic acid (DNA or RNA) or secondary structural elements (even when dNTPs are present).

Rapid Detection and Identification of Human Hookworm Infections through High Resolution Melting (HRM) Analysis

PubMed Central

Ngui, Romano; Lim, Yvonne A. L.; Chua, Kek Heng

2012-01-01

Background Hookworm infections are still endemic in low and middle income tropical countries with greater impact on the socioeconomic and public health of the bottom billion of the world's poorest people. In this study, a real-time polymerase chain reaction (PCR) coupled with high resolution melting-curve (HRM) analysis was evaluated for an accurate, rapid and sensitive tool for species identification focusing on the five human hookworm species. Methods Real-time PCR coupled with HRM analysis targeting the second internal transcribed spacer (ITS-2) of nuclear ribosomal DNA as the genetic marker was used to identify and distinguish hookworm species in human samples. Unique and distinct characteristics of HRM patterns were produced for each of the five hookworm species. The melting curves were characterized by peaks of 79.24±0.05°C and 83.00±0.04°C for Necator americanus, 79.12±0.10°C for Ancylostoma duodenale, 79.40±0.10°C for Ancylostoma ceylanicum, 79.63±0.05°C for Ancylostoma caninum and 79.70±0.14°C for Ancylostoma braziliense. An evaluation of the method's sensitivity and specificity revealed that this assay was able to detect as low as 0.01 ng/µl hookworm DNA and amplification was only recorded for hookworm positive samples. Conclusion The HRM assay developed in this study is a rapid and straightforward method for the diagnosis, identification and discrimination of five human hookworms. This assay is simple compared to other probe-based genotyping methods as it does not require multiplexing, DNA sequencing or post-PCR processing. Therefore, this method offers a new alternative for rapid detection of human hookworm species. PMID:22844538

High resolution melting analysis is a more sensitive and effective alternative to gel-based platforms in analysis of SSR--an example in citrus.

PubMed

Distefano, Gaetano; Caruso, Marco; La Malfa, Stefano; Gentile, Alessandra; Wu, Shu-Biao

2012-01-01

High resolution melting curve analysis (HRM) has been used as an efficient, accurate and cost-effective tool to detect single nucleotide polymorphisms (SNPs) or insertions or deletions (INDELs). However, its efficiency, accuracy and applicability to discriminate microsatellite polymorphism have not been extensively assessed. The traditional protocols used for SSR genotyping include PCR amplification of the DNA fragment and the separation of the fragments on electrophoresis-based platform. However, post-PCR handling processes are laborious and costly. Furthermore, SNPs present in the sequences flanking repeat motif cannot be detected by polyacrylamide-gel-electrophoresis based methods. In the present study, we compared the discriminating power of HRM with the traditional electrophoresis-based methods and provided a panel of primers for HRM genotyping in Citrus. The results showed that sixteen SSR markers produced distinct polymorphic melting curves among the Citrus spp investigated through HRM analysis. Among those, 10 showed more genotypes by HRM analysis than capillary electrophoresis owing to the presence of SNPs in the amplicons. For the SSR markers without SNPs present in the flanking region, HRM also gave distinct melting curves which detected same genotypes as were shown in capillary electrophoresis (CE) analysis. Moreover, HRM analysis allowed the discrimination of most of the 15 citrus genotypes and the resulting genetic distance analysis clustered them into three main branches. In conclusion, it has been approved that HRM is not only an efficient and cost-effective alternative of electrophoresis-based method for SSR markers, but also a method to uncover more polymorphisms contributed by SNPs present in SSRs. It was therefore suggested that the panel of SSR markers could be used in a variety of applications in the citrus biodiversity and breeding programs using HRM analysis. Furthermore, we speculate that the HRM analysis can be employed to analyse SSR markers in a wide range of applications in all other species.

Delocalization Drives Free Charge Generation in Conjugated Polymer Films

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pace, Natalie A.; Reid, Obadiah G.; Rumbles, Garry

We demonstrate that the product of photoinduced electron transfer between a conjugated polymer host and a dilute molecular sensitizer is controlled by the structural state of the polymer. Ordered semicrystalline solids exhibit free charge generation, while disordered polymers in the melt phase do not. We use photoluminescence (PL) and time-resolved microwave conductivity (TRMC) measurements to sweep through polymer melt transitions in situ. Free charge generation measured by TRMC turns off upon melting, whereas PL quenching of the molecular sensitizers remains constant, implying unchanged electron transfer efficiency. The key difference is the intermolecular order of the polymer host in the solidmore » state compared to the melt. We propose that this order-disorder transition modulates the localization length of the initial charge-transfer state, which controls the probability of free charge formation.« less

Delocalization Drives Free Charge Generation in Conjugated Polymer Films

DOE PAGES

Pace, Natalie A.; Reid, Obadiah G.; Rumbles, Garry

2018-02-19

We demonstrate that the product of photoinduced electron transfer between a conjugated polymer host and a dilute molecular sensitizer is controlled by the structural state of the polymer. Ordered semicrystalline solids exhibit free charge generation, while disordered polymers in the melt phase do not. We use photoluminescence (PL) and time-resolved microwave conductivity (TRMC) measurements to sweep through polymer melt transitions in situ. Free charge generation measured by TRMC turns off upon melting, whereas PL quenching of the molecular sensitizers remains constant, implying unchanged electron transfer efficiency. The key difference is the intermolecular order of the polymer host in the solidmore » state compared to the melt. We propose that this order-disorder transition modulates the localization length of the initial charge-transfer state, which controls the probability of free charge formation.« less

Reconstruction of Jakobshavn Isbrae's calving dynamics from 1985 to 2017 and sensitivity to future ocean forcing

NASA Astrophysics Data System (ADS)

Bondzio, J. H.; Morlighem, M.; Seroussi, H. L.

2017-12-01

Oceanic forcing is likely to have triggered the breakup of Jakobshavn Isbræ's floating ice tongue in the late 1990s, which led to ongoing dynamic changes such as widespread flow acceleration and mass loss. Our understanding of the link between ice dynamics, oceanic forcing, and calving is limited, yet crucial for prognostic simulations of Jakobshavn Isbræ. Here, we first reconstruct Jakobshavn's calving dynamics from 1985 to 2017, by relying on the model from Bondzio et al. 2017, but with a freely evolving ice front. We test different calving rate parameterizations implemented in the Ice Sheet System Model (ISSM) and determine the best law by comparing the modeled retreat to observations. We then identify the controls on calving rate and ice front retreat by varying the submarine melting rate and frontal melt rates as a function of subglacial water discharge and ocean thermal forcing. This sensitivity analysis is an important step toward performing prognostic simulations of JI and provides pathways for future data acquisition.

Optimizing the vacuum plasma spray deposition of metal, ceramic, and cermet coatings using designed experiments

NASA Astrophysics Data System (ADS)

Kingswell, R.; Scott, K. T.; Wassell, L. L.

1993-06-01

The vacuum plasma spray (VPS) deposition of metal, ceramic, and cermet coatings has been investigated using designed statistical experiments. Processing conditions that were considered likely to have a significant influence on the melting characteristics of the precursor powders and hence deposition efficiency were incorporated into full and fractional factorial experimental designs. The processing of an alumina powder was very sensitive to variations in the deposition conditions, particularly the injection velocity of the powder into the plasma flame, the plasma gas composition, and the power supplied to the gun. Using a combination of full and fractional factorial experimental designs, it was possible to rapidly identify the important spraying variables and adjust these to produce a deposition efficiency approaching 80 percent. The deposition of a nickel-base alloy metal powder was less sensitive to processing conditions. Generally, however, a high degree of particle melting was achieved for a wide range of spray conditions. Preliminary experiments performed using a tungsten carbide/cobalt cermet powder indicated that spray efficiency was not sensitive to deposition conditions. However, microstructural analysis revealed considerable variations in the degree of tungsten carbide dissolution. The structure and properties of the optimized coatings produced in the factorial experiments are also discussed.

The effect of free radical inhibitor on the sensitized radiation crosslinking and thermal processing stabilization of polyurethane shape memory polymers.

PubMed

Hearon, Keith; Smith, Sarah E; Maher, Cameron A; Wilson, Thomas S; Maitland, Duncan J

2013-02-01

The effects of free radical inhibitor on the electron beam crosslinking and thermal processing stabilization of novel radiation crosslinkable polyurethane shape memory polymers (SMPs) blended with acrylic radiation sensitizers have been determined. The SMPs in this study possess novel processing capabilities-that is, the ability to be melt processed into complex geometries as thermoplastics and crosslinked in a secondary step using electron beam irradiation. To increase susceptibility to radiation crosslinking, the radiation sensitizer pentaerythritol triacrylate (PETA) was solution blended with thermoplastic polyurethane SMPs made from 2-butene-1,4-diol and trimethylhexamethylene diisocyanate (TMHDI). Because thermoplastic melt processing methods such as injection molding are often carried out at elevated temperatures, sensitizer thermal instability is a major processing concern. Free radical inhibitor can be added to provide thermal stabilization; however, inhibitor can also undesirably inhibit radiation crosslinking. In this study, we quantified both the thermal stabilization and radiation crosslinking inhibition effects of the inhibitor 1,4-benzoquinone (BQ) on polyurethane SMPs blended with PETA. Sol/gel analysis of irradiated samples showed that the inhibitor had little to no inverse effects on gel fraction at concentrations of 0-10,000 ppm, and dynamic mechanical analysis showed only a slight negative correlation between BQ composition and rubbery modulus. The 1,4-benzoquinone was also highly effective in thermally stabilizing the acrylic sensitizers. The polymer blends could be heated to 150°C for up to five hours or to 125°C for up to 24 hours if stabilized with 10,000 ppm BQ and could also be heated to 125°C for up to 5 hours if stabilized with 1000 ppm BQ without sensitizer reaction occurring. We believe this study provides significant insight into methods for manipulation of the competing mechanisms of radiation crosslinking and thermal stabilization of radiation sensitizers, thereby facilitating further development of radiation crosslinkable thermoplastic SMPs.

The effect of free radical inhibitor on the sensitized radiation crosslinking and thermal processing stabilization of polyurethane shape memory polymers

NASA Astrophysics Data System (ADS)

Hearon, Keith; Smith, Sarah E.; Maher, Cameron A.; Wilson, Thomas S.; Maitland, Duncan J.

2013-02-01

The effects of free radical inhibitor on the electron beam crosslinking and thermal processing stabilization of novel radiation crosslinkable polyurethane shape memory polymers (SMPs) blended with acrylic radiation sensitizers have been determined. The SMPs in this study possess novel processing capabilities—that is, the ability to be melt processed into complex geometries as thermoplastics and crosslinked in a secondary step using electron beam irradiation. To increase susceptibility to radiation crosslinking, the radiation sensitizer pentaerythritol triacrylate (PETA) was solution blended with thermoplastic polyurethane SMPs made from 2-butene-1,4-diol and trimethylhexamethylene diisocyanate (TMHDI). Because the thermoplastic melt processing methods such as injection molding are often carried out at elevated temperatures, sensitizer thermal instability is a major processing concern. Free radical inhibitor can be added to provide thermal stabilization; however, inhibitor can also undesirably inhibit radiation crosslinking. In this study, we quantified both the thermal stabilization and radiation crosslinking inhibition effects of the inhibitor 1,4-benzoquinone (BQ) on polyurethane SMPs blended with PETA. Sol/gel analysis of irradiated samples showed that the inhibitor had little to no inverse effects on gel fraction at concentrations of 0-10,000 ppm, and dynamic mechanical analysis showed only a slight negative correlation between BQ composition and rubbery modulus. The 1,4-benzoquinone was also highly effective in thermally stabilizing the acrylic sensitizers. The polymer blends could be heated to 150 °C for up to 5 h or to 125 °C for up to 24 h if stabilized with 10,000 ppm BQ and could also be heated to 125 °C for up to 5 h if stabilized with 1000 ppm BQ without sensitizer reaction occurring. We believe this study provides significant insight into methods for manipulation of the competing mechanisms of radiation crosslinking and thermal stabilization of radiation sensitizers, thereby facilitating further development of radiation crosslinkable thermoplastic SMPs.

Snowmelt sensitivity to warmer temperatures: a field-validated model analysis, southern Sierra Nevada, California

NASA Astrophysics Data System (ADS)

Musselman, K. N.; Molotch, N. P.; Margulis, S. A.

2014-12-01

We present model simulations of climate change impacts on snowmelt processes over a 1600 km2 area in the southern Sierra Nevada, including western Sequoia National Park. The domain spans a 3600 m elevation gradient and ecosystems ranging from semi-arid grasslands to giant sequoia groves to alpine tundra. Three reference years were evaluated: a moderately dry snow season (23% below average SWE), an average snow season (7% above average SWE), and a moderately wet snow season (54% above average SWE). The Alpine3D model was run for the reference years and results were evaluated against data from a multi-scale measurement campaign that included repeated manual snow courses and basin-scale snow surveys, dozens of automated snow depth sensors, and automated SWE stations. Compared to automated measurements, the model represented the date of snow disappearance within two days. Compared to manual measurements, model SWE RMSE values for the average and wet snow seasons were highly correlated (R2=0.89 and R2=0.73) with the distance of SWE measurements from the nearest precipitation gauge used to force the model; no significant correlation was found with elevation. The results suggest that Alpine3D is highly accurate during the melt season and that precipitation uncertainty may critically limit snow model accuracy. The air temperature measured at 19 regional stations for the three reference years was modified by +1°C to +6°C to simulate the impact of warmer temperatures on snowmelt dynamics over the 3600 m elevation gradient. For all years, progressively warmer temperatures caused the seasonal SWE centroid to shift earlier and higher in elevation. At forested middle elevations, 70 - 80% of the present-day snowpack volume is lost in a +2°C scenario; 30 - 40% of that change is a result of precipitation phase shift and the remainder is due to enhanced melt. At all elevations, spring and fall snowpack was most sensitive to warmer temperatures; mid-winter sensitivity was least for elevations >3100 m. Interestingly, the dominant effect of warmer temperatures on snowmelt was a reduction in daily melt rates. The drier year was most sensitive to temperature changes with a greater decrease in the number of days with high melt rates. The results offer insight into the sensitivity of snowmelt processes to warmer temperatures in the Sierra Nevada.

The use of high resolution melting analysis to detect Fabry mutations in heterozygous females via dry bloodspots.

PubMed

Tai, Chang-Long; Liu, Mei-Ying; Yu, Hsiao-Chi; Chiang, Chiang-Chuan; Chiang, Hung; Suen, Jeng-Hung; Kao, Shu-Min; Huang, Yu-Hsiu; Wu, Tina Jui-Ting; Yang, Chia-Feng; Tsai, Fang-Chih; Lin, Ching-Yuang; Chang, Jan-Gowth; Chen, Hong-Duo; Niu, Dau-Ming

2012-02-18

As an X-linked genetic disorder, Fabry disease was first thought to affect males only, and females were generally considered to be asymptomatic carriers. However, recent research suggests that female carriers of Fabry disease may still develop vital organ damage causing severe morbidity and mortality. In the previous newborn screening, from 299,007 newborns, we identified a total of 20 different Fabry mutations and 121 newborns with Fabry mutations. However, we found that most female carriers are not detected by enzyme assays. A streamlined method for high resolution melting (HRM) analysis was designed to screen for GLA gene mutations using a same PCR and melting program. Primer sets were designed to cover the 7 exons and the Chinese common intronic mutation, IVS4+919G>A of GLA gene. The HRM analysis was successful in identifying heterozygous and hemizygous patients with the 20 surveyed mutations. We were also successful in using this method to test dry blood spots of newborns afflicted with Fabry mutations without having to determine DNA concentration before PCR amplification. The results of this study show that HRM could be a reliable and sensitive method for use in the rapid screening of females for GLA mutations. Copyright © 2011 Elsevier B.V. All rights reserved.

High Resolution Melting (HRM) for High-Throughput Genotyping-Limitations and Caveats in Practical Case Studies.

PubMed

Słomka, Marcin; Sobalska-Kwapis, Marta; Wachulec, Monika; Bartosz, Grzegorz; Strapagiel, Dominik

2017-11-03

High resolution melting (HRM) is a convenient method for gene scanning as well as genotyping of individual and multiple single nucleotide polymorphisms (SNPs). This rapid, simple, closed-tube, homogenous, and cost-efficient approach has the capacity for high specificity and sensitivity, while allowing easy transition to high-throughput scale. In this paper, we provide examples from our laboratory practice of some problematic issues which can affect the performance and data analysis of HRM results, especially with regard to reference curve-based targeted genotyping. We present those examples in order of the typical experimental workflow, and discuss the crucial significance of the respective experimental errors and limitations for the quality and analysis of results. The experimental details which have a decisive impact on correct execution of a HRM genotyping experiment include type and quality of DNA source material, reproducibility of isolation method and template DNA preparation, primer and amplicon design, automation-derived preparation and pipetting inconsistencies, as well as physical limitations in melting curve distinction for alternative variants and careful selection of samples for validation by sequencing. We provide a case-by-case analysis and discussion of actual problems we encountered and solutions that should be taken into account by researchers newly attempting HRM genotyping, especially in a high-throughput setup.

High Resolution Melting (HRM) for High-Throughput Genotyping—Limitations and Caveats in Practical Case Studies

PubMed Central

Słomka, Marcin; Sobalska-Kwapis, Marta; Wachulec, Monika; Bartosz, Grzegorz

2017-01-01

High resolution melting (HRM) is a convenient method for gene scanning as well as genotyping of individual and multiple single nucleotide polymorphisms (SNPs). This rapid, simple, closed-tube, homogenous, and cost-efficient approach has the capacity for high specificity and sensitivity, while allowing easy transition to high-throughput scale. In this paper, we provide examples from our laboratory practice of some problematic issues which can affect the performance and data analysis of HRM results, especially with regard to reference curve-based targeted genotyping. We present those examples in order of the typical experimental workflow, and discuss the crucial significance of the respective experimental errors and limitations for the quality and analysis of results. The experimental details which have a decisive impact on correct execution of a HRM genotyping experiment include type and quality of DNA source material, reproducibility of isolation method and template DNA preparation, primer and amplicon design, automation-derived preparation and pipetting inconsistencies, as well as physical limitations in melting curve distinction for alternative variants and careful selection of samples for validation by sequencing. We provide a case-by-case analysis and discussion of actual problems we encountered and solutions that should be taken into account by researchers newly attempting HRM genotyping, especially in a high-throughput setup. PMID:29099791

Interpreting Continental Break-Up From Surface Observations: Analysis of 1D Partial Melting Using Synthetic Waveform Propagation

NASA Astrophysics Data System (ADS)

Franken, T.; Armitage, J. J.; Fuji, N.; Fournier, A.

2017-12-01

Low shear-wave velocity zones underneath margins of continental break-up are believed to be related to the presence of melt. Many models attempt to model the process of melt production and transportation during mantle upwelling, yet there is a disconnect between geodynamic models, seismic observations, and petrological studies of melt flow velocities. Geodynamic models that emulate melt retention of 2 %, suggested by shear-wave velocity anomalies (Forsyth & MELT Seismic Team, 1998), fail to adequately reproduce the seismic signal as seen in receiver functions (Rychert, 2012; Armitage et al., 2015). Furthermore, numerical models of melt migration conclude mean melt flow velocities up to 1,3 m yr-1(Weatherley & Katz, 2015), whereas Uranium isotope migration rates advocate velocities up to two orders of magnitude higher. This study aims to reconcile the diverting assertions on the partial melting process by analysing the effect of melt presence on the coda of the seismic signal. A 1D forward model has been created to emulate melt production and transportation in an upwelling mantle environment. Scenarios have been modelled for variable upwelling velocities v (1 - 100 mm yr-1), initial temperatures T0 (1200 - 1800 °C) and permeabilities k0 (10-9 - 10-5 m2). The 1D model parameters are converted to anharmonic seismic parameters using look-up tables from phase diagrams (Goes et al., 2012) to generate synthetic seismograms with the Direct Solution Method. The maximum frequency content of the synthetics is 1,25 Hz, sampled at 20 Hz with a low-pass filter of 0,1 Hz. A comparison between the synthetics and seismic observations of the La Reunion mantle plume from the RER Geoscope receiver is performed using a Monte-Carlo approach. The synthetic seismograms show highest sensitivity to the presence of melt in S-waves within epicentral distances of 0-20 degrees. In the 0-10 degree range only a time-shift is observed proportional to the melt fraction at the onset of melting. Within the 10-20 degree range the presence of melt causes an additional change in the coda of the signal compared to a no-melt model. By analysing these altered synthetic waveforms we search for a seismic signature corresponding to melt presence to form a benchmark for the comparison between the Monte-Carlo results and the seismic observations.

Investigation of Thermal and Viscoelastic Properties of Polymers Relevant to Hot Melt Extrusion, IV: Affinisol™ HPMC HME Polymers.

PubMed

Gupta, Simerdeep Singh; Solanki, Nayan; Serajuddin, Abu T M

2016-02-01

Most cellulosic polymers cannot be used as carriers for preparing solid dispersion of drugs by hot melt extrusion (HME) due to their high melt viscosity and thermal degradation at high processing temperatures. Three HME-grade hydroxypropyl methylcelluloses, namely Affinisol™ HPMC HME 15 cP, Affinisol™ HPMC HME 100 cP, and Affinisol™ HPMC HME 4 M, have recently been introduced by The Dow Chemical Co. to enable the preparation of solid dispersion at lower and more acceptable processing temperatures. In the present investigation, physicochemical properties of the new polymers relevant to HME were determined and compared with that of Kollidon(®) VA 64. Powder X-ray diffraction (PXRD), modulated differential scanning calorimetry (mDSC), thermogravimetric analysis (TGA), moisture sorption, rheology, and torque analysis by melt extrusion were applied. PXRD and mDSC showed that the Affinisol™ polymers were amorphous in nature. According to TGA, the onset of degradation for all polymers was >220°C. The Affinisol™ polymers exhibited less hygroscopicity than Kollidon(®) VA 64 and another HPMC polymer, Methocel™ K100LV. The complex viscosity profiles of the Affinisol™ polymers as a function of temperature were similar. The viscosity of the Affinisol™ polymers was highly sensitive to the shear rate applied, and unlike Kollidon(®) VA 64, the viscosity decreased drastically when the angular frequency was increased. Because of the very high shear rate encountered during melt extrusion, Affinisol™ polymers showed capability of being extruded at larger windows of processing temperatures as compared to that of Kollidon(®) VA 64.

Differentiation of Campylobacter jejuni and Campylobacter coli Using Multiplex-PCR and High Resolution Melt Curve Analysis

PubMed Central

Banowary, Banya; Dang, Van Tuan; Sarker, Subir; Connolly, Joanne H.; Chenu, Jeremy; Groves, Peter; Ayton, Michelle; Raidal, Shane; Devi, Aruna; Vanniasinkam, Thiru; Ghorashi, Seyed A.

2015-01-01

Campylobacter spp. are important causes of bacterial gastroenteritis in humans in developed countries. Among Campylobacter spp. Campylobacter jejuni (C. jejuni) and C. coli are the most common causes of human infection. In this study, a multiplex PCR (mPCR) and high resolution melt (HRM) curve analysis were optimized for simultaneous detection and differentiation of C. jejuni and C. coli isolates. A segment of the hippuricase gene (hipO) of C. jejuni and putative aspartokinase (asp) gene of C. coli were amplified from 26 Campylobacter isolates and amplicons were subjected to HRM curve analysis. The mPCR-HRM was able to differentiate between C. jejuni and C. coli species. All DNA amplicons generated by mPCR were sequenced. Analysis of the nucleotide sequences from each isolate revealed that the HRM curves were correlated with the nucleotide sequences of the amplicons. Minor variation in melting point temperatures of C. coli or C. jejuni isolates was also observed and enabled some intraspecies differentiation between C. coli and/or C. jejuni isolates. The potential of PCR-HRM curve analysis for the detection and speciation of Campylobacter in additional human clinical specimens and chicken swab samples was also confirmed. The sensitivity and specificity of the test were found to be 100% and 92%, respectively. The results indicated that mPCR followed by HRM curve analysis provides a rapid (8 hours) technique for differentiation between C. jejuni and C. coli isolates. PMID:26394042

Enabling fiber optic serotyping of pathogenic bacteria through improved anti-fouling functional surfaces

NASA Astrophysics Data System (ADS)

Janssen, K. P. F.; Knez, K.; Vanysacker, L.; Schrooten, J.; Spasic, D.; Lammertyn, J.

2012-06-01

Significant research efforts are continually being directed towards the development of sensitive and accurate surface plasmon resonance biosensors for sequence specific DNA detection. These sensors hold great potential for applications in healthcare and diagnostics. However, the performance of these sensors in practical usage scenarios is often limited due to interference from the sample matrix. This work shows how the co-immobilization of glycol (PEG) diluents or ‘back filling’ of the DNA sensing layer can successfully address these problems. A novel SPR based melting assay is used for the analysis of a synthetic oligomer target as well as PCR amplified genomic DNA extracted from Legionella pneumophila. The benefits of sensing layer back filling on the assay performance are first demonstrated through melting analysis of the oligomer target and it is shown how back filling enables accurate discrimination of Legionella pneumophila serogroups directly from the PCR reaction product with complete suppression of sensor fouling.

Rapid detection and differentiation of avian infectious bronchitis virus: an application of Mass genotype by melting temperature analysis in RT-qPCR using SYBR Green I

PubMed Central

OKINO, Cintia Hiromi; MONTASSIER, Maria de Fátima Silva; de OLIVEIRA, Andressa Peres; MONTASSIER, Helio José

2018-01-01

A method based on Melting Temperature analysis of Hypervariable regions (HVR) of S1 gene within a RT-qPCR was developed to detect different genotypes of avian infectious bronchitis virus (IBV) and identify the Mass genotype. The method was able to rapidly identify the Mass genotype among IBV field isolates, vaccine attenuated strains and reference M41 strain in allantoic liquid and also directly in tissues. The RT-qPCR developed detected the virus in both tracheal and pulmonary samples from M41-infected or H120-infected birds, in a larger post-infection period compared to detection by standard method of virus isolation. RT-qPCR method tested provided a sensitivity and rapid approach for screening on IBV detection and Mass genotyping from IBV isolates. PMID:29491226

Cloud screening and melt water detection over melting sea ice using AATSR/SLSTR

NASA Astrophysics Data System (ADS)

Istomina, Larysa; Heygster, Georg

2014-05-01

With the onset of melt in the Arctic Ocean, the fraction of melt water on sea ice, the melt pond fraction, increases. The consequences are: the reduced albedo of sea ice, increased transmittance of sea ice and affected heat balance of the system with more heat passing through the ice into the ocean, which facilitates further melting. The onset of melt, duration of melt season and melt pond fraction are good indicators of the climate state of the Arctic and its change. In the absence of reliable sea ice thickness retrievals in summer, melt pond fraction retrieval from satellite is in demand as input for GCM as an indicator of melt state of the sea ice. The retrieval of melt pond fraction with a moderate resolution radiometer as AATSR is, however, a non-trivial task due to a variety of subpixel surface types with very different optical properties, which give non-unique combinations if mixed. In this work this has been solved by employing additional information on the surface and air temperature of the pixel. In the current work, a concept of melt pond detection on sea ice is presented. The basis of the retrieval is the sensitivity of AATSR reflectance channels 550nm and 860nm to the amount of melt water on sea ice. The retrieval features extensive usage of a database of in situ surface albedo spectra. A tree of decisions is employed to select the feasible family of in situ spectra for the retrieval, depending on the melt stage of the surface. Reanalysis air temperature at the surface and brightness temperature measured by the satellite sensor are analyzed in order to evaluate the melting status of the surface. Case studies for FYI and MYI show plausible retrieved melt pond fractions, characteristic for both of the ice types. The developed retrieval can be used to process the historical AATSR (2002-2012) dataset, as well as for the SLSTR sensor onboard the future Sentinel-3 mission (scheduled for launch in 2015), to keep the continuity and obtain longer time sequence of the product. Cloud detection over melting sea ice is a non-trivial problem as well. The sensitivity of AATSR 3.7 micron band to atmospheric reflectance is used to screen out clouds over melting sea ice.

Detection of monoclonal immunoglobulin heavy chain gene rearrangement (FR3) in Thai malignant lymphoma by High Resolution Melting curve analysis.

PubMed

Kummalue, Tanawan; Chuphrom, Anchalee; Sukpanichanant, Sanya; Pongpruttipan, Tawatchai; Sukpanichanant, Sathien

2010-05-19

Malignant lymphoma, especially non-Hodgkin lymphoma, is one of the most common hematologic malignancies in Thailand. The diagnosis of malignant lymphoma is often problematic, especially in early stages of the disease. Detection of antigen receptor gene rearrangement including T cell receptor (TCR) and immunoglobulin heavy chain (IgH) by polymerase chain reaction followed by heteroduplex has currently become standard whereas fluorescent fragment analysis (GeneScan) has been used for confirmation test. In this study, three techniques had been compared: thermocycler polymerase chain reaction (PCR) followed by heteroduplex and polyacrylamide gel electrophoresis, GeneScan analysis, and real time PCR with High Resolution Melting curve analysis (HRM). The comparison was carried out with DNA extracted from paraffin embedded tissues diagnosed as B- cell non-Hodgkin lymphoma. Specific PCR primers sequences for IgH gene variable region 3, including fluorescence labeled IgH primers were used and results were compared with HRM. In conclusion, the detection IgH gene rearrangement by HRM in the LightCycler System showed potential for distinguishing monoclonality from polyclonality in B-cell non-Hodgkin lymphoma. Malignant lymphoma, especially non-Hodgkin lymphoma, is one of the most common hematologic malignancies in Thailand. The incidence rate as reported by Ministry of Public Health is 3.1 per 100,000 population in female whereas the rate in male is 4.5 per 100,000 population 1. At Siriraj Hospital, the new cases diagnosed as malignant lymphoma were 214.6 cases/year 2. The diagnosis of malignant lymphoma is often problematic, especially in early stages of the disease. Therefore, detection of antigen receptor gene rearrangement including T cell receptor (TCR) and immunoglobulin heavy chain (IgH) by polymerase chain reaction (PCR) assay has recently become a standard laboratory test for discrimination of reactive from malignant clonal lymphoproliferation 34. Analyzing DNA extracted from formalin-fixed, paraffin-embedded tissues by multiplex PCR techniques is more rapid, accurate and highly sensitive. Measuring the size of the amplicon from PCR analysis could be used to diagnose malignant lymphoma with monoclonal pattern showing specific and distinct bands detected on acrylamide gel electrophoresis. However, this technique has some limitations and some patients might require a further confirmation test such as GeneScan or fragment analysis 56.GeneScan technique or fragment analysis reflects size and peak of DNA by using capillary gel electrophoresis. This technique is highly sensitive and can detect 0.5-1% of clonal lymphoid cells. It measures the amplicons by using various fluorescently labeled primers at forward or reverse sides and a specific size standard. Using a Genetic Analyzer machine and GeneMapper software (Applied Bioscience, USA), the monoclonal pattern revealed one single, sharp and high peak at the specific size corresponding to acrylamide gel pattern, whereas the polyclonal pattern showed multiple and small peak condensed at the same size standard. This technique is the most sensitive and accurate technique; however, it usually requires high technical experience and is also of high cost 7. Therefore, rapid and more cost effective technique are being sought.LightCycler PCR performs the diagnostic detection of amplicon via melting curve analysis within 2 hours with the use of a specific dye 89. This dye consists of two types: one known as SYBR-Green I which is non specific and the other named as High Resolution Melting analysis (HRM) which is highly sensitive, more accurate and stable. Several reports demonstrated that this new instrument combined with DNA intercalating dyes can be used to discriminate sequence changes in PCR amplicon without manual handling of PCR product 1011. Therefore, current investigations using melting curve analysis are being developed 1213.In this study, three different techniques were compared to evaluate the suitability of LightCycler PCR with HRM as the clonal diagnostic tool for IgH gene rearrangement in B-cell non-Hogdkin lymphoma, i.e. thermocycler PCR followed by heteroduplex analysis and PAGE, GeneScan analysis and LightCycler PCR with HRM.

Automated Microfluidic Platform for Serial Polymerase Chain Reaction and High-Resolution Melting Analysis.

PubMed

Cao, Weidong; Bean, Brian; Corey, Scott; Coursey, Johnathan S; Hasson, Kenton C; Inoue, Hiroshi; Isano, Taisuke; Kanderian, Sami; Lane, Ben; Liang, Hongye; Murphy, Brian; Owen, Greg; Shinoda, Nobuhiko; Zeng, Shulin; Knight, Ivor T

2016-06-01

We report the development of an automated genetic analyzer for human sample testing based on microfluidic rapid polymerase chain reaction (PCR) with high-resolution melting analysis (HRMA). The integrated DNA microfluidic cartridge was used on a platform designed with a robotic pipettor system that works by sequentially picking up different test solutions from a 384-well plate, mixing them in the tips, and delivering mixed fluids to the DNA cartridge. A novel image feedback flow control system based on a Canon 5D Mark II digital camera was developed for controlling fluid movement through a complex microfluidic branching network without the use of valves. The same camera was used for measuring the high-resolution melt curve of DNA amplicons that were generated in the microfluidic chip. Owing to fast heating and cooling as well as sensitive temperature measurement in the microfluidic channels, the time frame for PCR and HRMA was dramatically reduced from hours to minutes. Preliminary testing results demonstrated that rapid serial PCR and HRMA are possible while still achieving high data quality that is suitable for human sample testing. © 2015 Society for Laboratory Automation and Screening.

Differentiation of five enterohepatic Helicobacter species by nested PCR with high-resolution melting curve analysis.

PubMed

Wu, Miaoli; Rao, Dan; Zhu, Yujun; Wang, Jing; Yuan, Wen; Zhang, Yu; Huang, Ren; Guo, Pengju

2017-04-01

Enterohepatic Helicobacter species (EHS) are widespread in rodent species around the world. Several studies have demonstrated that infection with EHS can interfere with the outcomes of animal experiments in cancer research and significantly influence the study results. Therefore, it is essential to establish a rapid detection and identification of EHS for biomedical research using laboratory rodents. Our study aimed to develop a rapid and sensitive method to detect and distinguish five enterohepatic Helicobacter species. Nested PCR followed by high-resolution melting curve analysis (HRM) was developed for identification of H. bilis, H. rodentium, H. muridarum, H. typhlonius, as well as H. hepaticus. To validate the accuracy of nested PCR-HRM analysis, quantitative real-time PCR methods for five different enterohepatic Helicobacter species were developed. A total of 50 cecal samples were tested using both nested PCR-HRM analysis and qPCR method. The nested PCR-HRM method could distinguish five enterohepatic Helicobacter species by different melting temperatures. The melting curve were characterized by peaks of 78.7 ± 0.12°C for H. rodentium, 80.51 ± 0.09°C for H. bilis, 81.6 ± 0.1°C for H. typhlonius, 82.11 ± 0.18°C for H. muridarum, and 82.95 ± 0.09°C for H. hepaticus. The nested PCR-HRM assay is a simple, rapid, and cost-effective assay. This assay could be a useful tool for molecular epidemiology study of enterohepatic Helicobacter infection and an attractive alternative for genotyping of enterohepatic Helicobacter species. © 2016 John Wiley & Sons Ltd.

Rapid detection of Wuchereria bancrofti and Brugia malayi in mosquito vectors (Diptera: Culicidae) using a real-time fluorescence resonance energy transfer multiplex PCR and melting curve analysis.

PubMed

Intapan, Pewpan M; Thanchomnang, Tongjit; Lulitanond, Viraphong; Maleewong, Wanchai

2009-01-01

We developed a single-step real-time fluorescence resonance energy transfer (FRET) multiplex polymerase chain reaction (PCR) merged with melting curve analysis for the detection of Wuchereria bancrofti and Brugia malayi DNA in blood-fed mosquitoes. Real-time FRET multiplex PCR is based on fluorescence melting curve analysis of a hybrid of amplicons generated from two families of repeated DNA elements: the 188 bp SspI repeated sequence, specific to W. bancrofti, and the 153-bp HhaI repeated sequence, specific to the genus Brugia and two pairs of specific fluorophore-labeled probes. Both W. bancrofti and B. malayi can be differentially detected in infected vectors by this process through their different fluorescence channel and melting temperatures. The assay could distinguish both human filarial DNAs in infected vectors from the DNAs of Dirofilaria immitis- and Plasmodium falciparum-infected human red blood cells and noninfected mosquitoes and human leukocytes. The technique showed 100% sensitivity and specificity and offers a rapid and reliable procedure for differentially identifying lymphatic filariasis. The introduced real-time FRET multiplex PCR can reduce labor time and reagent costs and is not prone to carry over contamination. The test can be used to screen mosquito vectors in endemic areas and therefore should be a useful diagnostic tool for the evaluation of infection rate of the mosquito populations and for xenomonitoring in the community after eradication programs such as the Global Program to Eliminate Lymphatic Filariasis.

KIT mutations in Russian patients with mucosal melanoma.

PubMed

Abysheva, Svetlana N; Iyevleva, Aglaya G; Efimova, Nina V; Mokhina, Yulia B; Sabirova, Feruza A; Ivantsov, Alexandr O; Artemieva, Anna S; Togo, Alexandr V; Moiseyenko, Vladimir M; Matsko, Dmitry E; Imyanitov, Evgeny N

2011-12-01

A single institution series of 48 mucosal melanomas (MMs) has been analyzed for the presence of KIT mutations using high-resolution melting and sequencing of abnormally melted DNA fragments. The analysis of exons 9, 11, 13, and 17 has revealed eight of 48 (17%) nonsynonymous alterations, including zero of seven head and neck, six of 24 anorectal, one of 15 genitourinary, one of one gastric, and zero of one mediastinal MMs. Seven of these mutations were potentially associated with the tumor sensitivity to KIT tyrosine kinase inhibitors. One tumor harbored somatically acquired silent nucleotide substitution c.1383A>G (T461T). This study adds to the evidence that a substantial portion of MMs carry a therapeutically relevant mutation in the KIT oncogene.

Sensitivity experiments with a one-dimensional coupled plume - iceflow model

NASA Astrophysics Data System (ADS)

Beckmann, Johanna; Perette, Mahé; Alexander, David; Calov, Reinhard; Ganopolski, Andrey

2016-04-01

Over the last few decades Greenland Ice sheet mass balance has become increasingly negative, caused by enhanced surface melting and speedup of the marine-terminating outlet glaciers at the ice sheet margins. Glaciers speedup has been related, among other factors, to enhanced submarine melting, which in turn is caused by warming of the surrounding ocean and less obviously, by increased subglacial discharge. While ice-ocean processes potentially play an important role in recent and future mass balance changes of the Greenland Ice Sheet, their physical understanding remains poorly understood. In this work we performed numerical experiments with a one-dimensional plume model coupled to a one-dimensional iceflow model. First we investigated the sensitivity of submarine melt rate to changes in ocean properties (ocean temperature and salinity), to the amount of subglacial discharge and to the glacier's tongue geometry itself. A second set of experiments investigates the response of the coupled model, i.e. the dynamical response of the outlet glacier to altered submarine melt, which results in new glacier geometry and updated melt rates.

Significance of DNA bond strength in programmable nanoparticle thermodynamics and dynamics.

PubMed

Yu, Qiuyan; Hu, Jinglei; Hu, Yi; Wang, Rong

2018-04-04

Assembly of nanoparticles (NPs) coated with complementary DNA strands leads to novel crystals with nanosized basic units rather than classic atoms, ions or molecules. The assembly process is mediated by hybridization of DNA via specific base pairing interaction, and is kinetically linked to the disassociation of DNA duplexes. DNA-level physiochemical quantities, both thermodynamic and kinetic, are key to understanding this process and essential for the design of DNA-NP crystals. The melting transition properties are helpful to judge the thermostability and sensitivity of relative DNA probes or other applications. Three different cases are investigated by changing the linker length and the spacer length on which the melting properties depend using the molecular dynamics method. Melting temperature is determined by sigmoidal melting curves based on hybridization percentage versus temperature and the Lindemann melting rule simultaneously. We provide a computational strategy based on a coarse-grained model to estimate the hybridization enthalpy, entropy and free energy from percentages of hybridizations which are readily accessible in experiments. Importantly, the lifetime of DNA bond dehybridization based on temperature and the activation energy depending on DNA bond strength are also calculated. The simulation results are in good agreement with the theoretical analysis and the present experimental data. Our study provides a good strategy to predict the melting temperature which is important for the DNA-directed nanoparticle system, and bridges the dynamics and thermodynamics of DNA-directed nanoparticle systems by estimating the equilibrium constant from the hybridization of DNA bonds quantitatively.

Methylation-Sensitive High Resolution Melting (MS-HRM).

PubMed

Hussmann, Dianna; Hansen, Lise Lotte

2018-01-01

Methylation-Sensitive High Resolution Melting (MS-HRM) is an in-tube, PCR-based method to detect methylation levels at specific loci of interest. A unique primer design facilitates a high sensitivity of the assays enabling detection of down to 0.1-1% methylated alleles in an unmethylated background.Primers for MS-HRM assays are designed to be complementary to the methylated allele, and a specific annealing temperature enables these primers to anneal both to the methylated and the unmethylated alleles thereby increasing the sensitivity of the assays. Bisulfite treatment of the DNA prior to performing MS-HRM ensures a different base composition between methylated and unmethylated DNA, which is used to separate the resulting amplicons by high resolution melting.The high sensitivity of MS-HRM has proven useful for detecting cancer biomarkers in a noninvasive manner in urine from bladder cancer patients, in stool from colorectal cancer patients, and in buccal mucosa from breast cancer patients. MS-HRM is a fast method to diagnose imprinted diseases and to clinically validate results from whole-epigenome studies. The ability to detect few copies of methylated DNA makes MS-HRM a key player in the quest for establishing links between environmental exposure, epigenetic changes, and disease.

Assessment for Melting Temperature Measurement of Nucleic Acid by HRM

PubMed Central

2016-01-01

High resolution melting (HRM), with a high sensitivity to distinguish the nucleic acid species with small variations, has been widely applied in the mutation scanning, methylation analysis, and genotyping. For the aim of extending HRM for the evaluation of thermal stability of nucleic acid secondary structures on sequence dependence, we investigated effects of the dye of EvaGreen, metal ions, and impurities (such as dNTPs) on melting temperature (T m) measurement by HRM. The accuracy of HRM was assessed as compared with UV melting method, and little difference between the two methods was found when the DNA T m was higher than 40°C. Both insufficiency and excessiveness of EvaGreen were found to give rise to a little bit higher T m, showing that the proportion of dye should be considered for precise T m measurement of nucleic acids. Finally, HRM method was also successfully used to measure T ms of DNA triplex, hairpin, and RNA duplex. In conclusion, HRM can be applied in the evaluation of thermal stability of nucleic acid (DNA or RNA) or secondary structural elements (even when dNTPs are present). PMID:27833775

Distributed modeling of ablation (1996–2011) and climate sensitivity on the glaciers of Taylor Valley, Antarctica

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoffman, Matthew J.; Fountain, Andrew G.; Liston, Glen E.

Here, the McMurdo Dry Valleys of Antarctica host the coldest and driest ecosystem on Earth, which is acutely sensitive to the availability of water coming from glacial runoff. We modeled the spatial variability in ablation and assessed climate sensitivity of the glacier ablation zones using 16 years of meteorological and surface mass-balance observations collected in Taylor Valley. Sublimation was the primary form of mass loss over much of the ablation zones, except for near the termini where melt, primarily below the surface, dominated. Microclimates in ~10 m scale topographic basins generated melt rates up to ten times higher than overmore » smooth glacier surfaces. In contrast, the vertical terminal cliffs on the glaciers can have higher or lower melt rates than the horizontal surfaces due to differences in incoming solar radiation. The model systematically underpredicted ablation for the final 5 years studied, possibly due to an increase of windblown sediment. Surface mass-balance sensitivity to temperature was ~–0.02 m w.e. K –1, which is among the smallest magnitudes observed globally. We also identified a high sensitivity to ice albedo, with a decrease of 0.02 having similar effects as a 1 K increase in temperature, and a complex sensitivity to wind speed.« less

Distributed modeling of ablation (1996–2011) and climate sensitivity on the glaciers of Taylor Valley, Antarctica

DOE PAGES

Hoffman, Matthew J.; Fountain, Andrew G.; Liston, Glen E.

2016-02-24

Here, the McMurdo Dry Valleys of Antarctica host the coldest and driest ecosystem on Earth, which is acutely sensitive to the availability of water coming from glacial runoff. We modeled the spatial variability in ablation and assessed climate sensitivity of the glacier ablation zones using 16 years of meteorological and surface mass-balance observations collected in Taylor Valley. Sublimation was the primary form of mass loss over much of the ablation zones, except for near the termini where melt, primarily below the surface, dominated. Microclimates in ~10 m scale topographic basins generated melt rates up to ten times higher than overmore » smooth glacier surfaces. In contrast, the vertical terminal cliffs on the glaciers can have higher or lower melt rates than the horizontal surfaces due to differences in incoming solar radiation. The model systematically underpredicted ablation for the final 5 years studied, possibly due to an increase of windblown sediment. Surface mass-balance sensitivity to temperature was ~–0.02 m w.e. K –1, which is among the smallest magnitudes observed globally. We also identified a high sensitivity to ice albedo, with a decrease of 0.02 having similar effects as a 1 K increase in temperature, and a complex sensitivity to wind speed.« less

Quality assessment of DNA derived from up to 30 years old formalin fixed paraffin embedded (FFPE) tissue for PCR-based methylation analysis using SMART-MSP and MS-HRM.

PubMed

Kristensen, Lasse S; Wojdacz, Tomasz K; Thestrup, Britta B; Wiuf, Carsten; Hager, Henrik; Hansen, Lise Lotte

2009-12-21

The High Resolution Melting (HRM) technology has recently been introduced as a rapid and robust analysis tool for the detection of DNA methylation. The methylation status of multiple tumor suppressor genes may serve as biomarkers for early cancer diagnostics, for prediction of prognosis and for prediction of response to treatment. Therefore, it is important that methodologies for detection of DNA methylation continue to evolve. Sensitive Melting Analysis after Real Time - Methylation Specific PCR (SMART-MSP) and Methylation Sensitive - High Resolution Melting (MS-HRM) are two methods for single locus DNA methylation detection based on HRM. Here, we have assessed the quality of DNA extracted from up to 30 years old Formalin Fixed Paraffin Embedded (FFPE) tissue for DNA methylation analysis using SMART-MSP and MS-HRM. The quality assessment was performed on DNA extracted from 54 Non-Small Cell Lung Cancer (NSCLC) samples derived from FFPE tissue, collected over 30 years and grouped into five years intervals. For each sample, the methylation levels of the CDKN2A (p16) and RARB promoters were estimated using SMART-MSP and MS-HRM assays designed to assess the methylation status of the same CpG positions. This allowed for a direct comparison of the methylation levels estimated by the two methods for each sample. CDKN2A promoter methylation levels were successfully determined by SMART-MSP and MS-HRM in all 54 samples. Identical methylation estimates were obtained by the two methods in 46 of the samples. The methylation levels of the RARB promoter were successfully determined by SMART-MSP in all samples. When using MS-HRM to assess RARB methylation five samples failed to amplify and 15 samples showed a melting profile characteristic for heterogeneous methylation. Twenty-seven of the remaining 34 samples, for which the methylation level could be estimated, gave the same result as observed when using SMART-MSP. MS-HRM and SMART-MSP can be successfully used for single locus methylation studies using DNA derived from up to 30 years old FFPE tissue. Furthermore, it can be expected that MS-HRM and SMART-MSP will provide similar methylation estimates when assays are designed to analyze the same CpG positions.

Validation of methylation-sensitive high-resolution melting (MS-HRM) for the detection of stool DNA methylation in colorectal neoplasms.

PubMed

Xiao, Zhujun; Li, Bingsheng; Wang, Guozhen; Zhu, Weisi; Wang, Zhongqiu; Lin, Jinfeng; Xu, Angao; Wang, Xinying

2014-04-20

Methylation-sensitive high-resolution melting (MS-HRM) is a new technique for assaying DNA methylation, but its feasibility for assaying stool in patients with colorectal cancer (CRC) is unknown. First, the MS-HRM and methylation-specific PCR (MSP) detection limits were tested. Second, the methylation statuses of SFRP2 and VIM were analyzed in stool samples by MS-HRM, and in matching tumor and normal colon tissues via bisulfite sequencing PCR (BSP). Third, a case-control study evaluated the diagnostic sensitivity and specificity of MS-HRM relative to results obtained with MSP and the fecal immunochemical test (FIT). Finally, the linearity and reproducibility of MS-HRM were assessed. The detection limits of MS-HRM and MSP were 1% and 5%, respectively. The diagnostic sensitivities of MS-HRM (87.3%, 55/63) in stool and BSP in matching tumor tissue (92.1%, 58/63) were highly consistent (κ=0.744). The MS-HRM assay detected 92.5% (37/40) methylation in CRCs, 94.4% (34/36) in advanced adenomas, and 8.8% (5/57) in normal controls. The results of MS-HRM analysis were stable and reliable and showed fairly good linearity for both SFRP2 (P<0.001, R(2)=0.957) and VIM (P<0.001, R(2)=0.954). MS-HRM shows potential for CRC screening. Copyright © 2014 Elsevier B.V. All rights reserved.

A sensitivity analysis for a thermomechanical model of the Antarctic ice sheet and ice shelves

NASA Astrophysics Data System (ADS)

Baratelli, F.; Castellani, G.; Vassena, C.; Giudici, M.

2012-04-01

The outcomes of an ice sheet model depend on a number of parameters and physical quantities which are often estimated with large uncertainty, because of lack of sufficient experimental measurements in such remote environments. Therefore, the efforts to improve the accuracy of the predictions of ice sheet models by including more physical processes and interactions with atmosphere, hydrosphere and lithosphere can be affected by the inaccuracy of the fundamental input data. A sensitivity analysis can help to understand which are the input data that most affect the different predictions of the model. In this context, a finite difference thermomechanical ice sheet model based on the Shallow-Ice Approximation (SIA) and on the Shallow-Shelf Approximation (SSA) has been developed and applied for the simulation of the evolution of the Antarctic ice sheet and ice shelves for the last 200 000 years. The sensitivity analysis of the model outcomes (e.g., the volume of the ice sheet and of the ice shelves, the basal melt rate of the ice sheet, the mean velocity of the Ross and Ronne-Filchner ice shelves, the wet area at the base of the ice sheet) with respect to the model parameters (e.g., the basal sliding coefficient, the geothermal heat flux, the present-day surface accumulation and temperature, the mean ice shelves viscosity, the melt rate at the base of the ice shelves) has been performed by computing three synthetic numerical indices: two local sensitivity indices and a global sensitivity index. Local sensitivity indices imply a linearization of the model and neglect both non-linear and joint effects of the parameters. The global variance-based sensitivity index, instead, takes into account the complete variability of the input parameters but is usually conducted with a Monte Carlo approach which is computationally very demanding for non-linear complex models. Therefore, the global sensitivity index has been computed using a development of the model outputs in a neighborhood of the reference parameter values with a second-order approximation. The comparison of the three sensitivity indices proved that the approximation of the non-linear model with a second-order expansion is sufficient to show some differences between the local and the global indices. As a general result, the sensitivity analysis showed that most of the model outcomes are mainly sensitive to the present-day surface temperature and accumulation, which, in principle, can be measured more easily (e.g., with remote sensing techniques) than the other input parameters considered. On the other hand, the parameters to which the model resulted less sensitive are the basal sliding coefficient and the mean ice shelves viscosity.

Heterogeneous to homogeneous melting transition visualized with ultrafast electron diffraction

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

The ultrafast laser excitation of matters leads to non-equilibrium states with complex solid-liquid phase transition dynamics. We used electron diffraction at mega-electronvolt energies to visualize the ultrafast melting of gold on the atomic scale length. For energy densities approaching the irreversible melting regime, we first observed heterogeneous melting on time scales of 100 ps to 1000 ps, transitioning to homogeneous melting that occurs catastrophically within 10-20 ps at higher energy densities. We showed evidence for the heterogeneous coexistence of solid and liquid. We determined the ion and electron temperature evolution and found superheated conditions. Our results constrain the electron-ion couplingmore » rate, determine the Debye temperature and reveal the melting sensitivity to nucleation seeds.« less

Analysis of HIV using a high resolution melting (HRM) diversity assay: automation of HRM data analysis enhances the utility of the assay for analysis of HIV incidence.

PubMed

Cousins, Matthew M; Swan, David; Magaret, Craig A; Hoover, Donald R; Eshleman, Susan H

2012-01-01

HIV diversity may be a useful biomarker for discriminating between recent and non-recent HIV infection. The high resolution melting (HRM) diversity assay was developed to quantify HIV diversity in viral populations without sequencing. In this assay, HIV diversity is expressed as a single numeric HRM score that represents the width of a melting peak. HRM scores are highly associated with diversity measures obtained with next generation sequencing. In this report, a software package, the HRM Diversity Assay Analysis Tool (DivMelt), was developed to automate calculation of HRM scores from melting curve data. DivMelt uses computational algorithms to calculate HRM scores by identifying the start (T1) and end (T2) melting temperatures for a DNA sample and subtracting them (T2 - T1 =  HRM score). DivMelt contains many user-supplied analysis parameters to allow analyses to be tailored to different contexts. DivMelt analysis options were optimized to discriminate between recent and non-recent HIV infection and to maximize HRM score reproducibility. HRM scores calculated using DivMelt were compared to HRM scores obtained using a manual method that is based on visual inspection of DNA melting curves. HRM scores generated with DivMelt agreed with manually generated HRM scores obtained from the same DNA melting data. Optimal parameters for discriminating between recent and non-recent HIV infection were identified. DivMelt provided greater discrimination between recent and non-recent HIV infection than the manual method. DivMelt provides a rapid, accurate method of determining HRM scores from melting curve data, facilitating use of the HRM diversity assay for large-scale studies.

Analysis of HIV Using a High Resolution Melting (HRM) Diversity Assay: Automation of HRM Data Analysis Enhances the Utility of the Assay for Analysis of HIV Incidence

PubMed Central

Cousins, Matthew M.; Swan, David; Magaret, Craig A.; Hoover, Donald R.; Eshleman, Susan H.

2012-01-01

Background HIV diversity may be a useful biomarker for discriminating between recent and non-recent HIV infection. The high resolution melting (HRM) diversity assay was developed to quantify HIV diversity in viral populations without sequencing. In this assay, HIV diversity is expressed as a single numeric HRM score that represents the width of a melting peak. HRM scores are highly associated with diversity measures obtained with next generation sequencing. In this report, a software package, the HRM Diversity Assay Analysis Tool (DivMelt), was developed to automate calculation of HRM scores from melting curve data. Methods DivMelt uses computational algorithms to calculate HRM scores by identifying the start (T1) and end (T2) melting temperatures for a DNA sample and subtracting them (T2–T1 = HRM score). DivMelt contains many user-supplied analysis parameters to allow analyses to be tailored to different contexts. DivMelt analysis options were optimized to discriminate between recent and non-recent HIV infection and to maximize HRM score reproducibility. HRM scores calculated using DivMelt were compared to HRM scores obtained using a manual method that is based on visual inspection of DNA melting curves. Results HRM scores generated with DivMelt agreed with manually generated HRM scores obtained from the same DNA melting data. Optimal parameters for discriminating between recent and non-recent HIV infection were identified. DivMelt provided greater discrimination between recent and non-recent HIV infection than the manual method. Conclusion DivMelt provides a rapid, accurate method of determining HRM scores from melting curve data, facilitating use of the HRM diversity assay for large-scale studies. PMID:23240016

FilmArray, an Automated Nested Multiplex PCR System for Multi-Pathogen Detection: Development and Application to Respiratory Tract Infection

PubMed Central

Poritz, Mark A.; Blaschke, Anne J.; Byington, Carrie L.; Meyers, Lindsay; Nilsson, Kody; Jones, David E.; Thatcher, Stephanie A.; Robbins, Thomas; Lingenfelter, Beth; Amiott, Elizabeth; Herbener, Amy; Daly, Judy; Dobrowolski, Steven F.; Teng, David H. -F.; Ririe, Kirk M.

2011-01-01

The ideal clinical diagnostic system should deliver rapid, sensitive, specific and reproducible results while minimizing the requirements for specialized laboratory facilities and skilled technicians. We describe an integrated diagnostic platform, the “FilmArray”, which fully automates the detection and identification of multiple organisms from a single sample in about one hour. An unprocessed biologic/clinical sample is subjected to nucleic acid purification, reverse transcription, a high-order nested multiplex polymerase chain reaction and amplicon melt curve analysis. Biochemical reactions are enclosed in a disposable pouch, minimizing the PCR contamination risk. FilmArray has the potential to detect greater than 100 different nucleic acid targets at one time. These features make the system well-suited for molecular detection of infectious agents. Validation of the FilmArray technology was achieved through development of a panel of assays capable of identifying 21 common viral and bacterial respiratory pathogens. Initial testing of the system using both cultured organisms and clinical nasal aspirates obtained from children demonstrated an analytical and clinical sensitivity and specificity comparable to existing diagnostic platforms. We demonstrate that automated identification of pathogens from their corresponding target amplicon(s) can be accomplished by analysis of the DNA melting curve of the amplicon. PMID:22039434

Evaluation of the MeltPro TB/STR assay for rapid detection of streptomycin resistance in Mycobacterium tuberculosis.

PubMed

Zhang, Ting; Hu, Siyu; Li, Guoli; Li, Hui; Liu, Xiaoli; Niu, Jianjun; Wang, Feng; Wen, Huixin; Xu, Ye; Li, Qingge

2015-03-01

Rapid and comprehensive detection of drug-resistance is essential for the control of tuberculosis, which has facilitated the development of molecular assays for the detection of drug-resistant mutations in Mycobacterium tuberculosis. We hereby assessed the analytical and clinical performance of an assay for streptomycin-resistant mutations. MeltPro TB/STR is a closed-tube, dual-color, melting curve analysis-based, real-time PCR test designed to detect 15 streptomycin-resistant mutations in rpsL 43, rpsL 88, rrs 513, rrs 514, rrs 517, and rrs 905-908 of M. tuberculosis. Analytical studies showed that the accuracy was 100%, the limit of detection was 50-500 bacilli per reaction, the reproducibility in the form of Tm variation was within 1.0 °C, and we could detect 20% STR resistance in mixed bacterial samples. The cross-platform study demonstrated that the assay could be performed on six models of real-time PCR instruments. A multicenter clinical study was conducted using 1056 clinical isolates, which were collected from three geographically different healthcare units, including 709 STR-susceptible and 347 STR-resistant isolates characterized on Löwenstein-Jensen solid medium by traditional drug susceptibility testing. The results showed that the clinical sensitivity and specificity of the MeltPro TB/STR was 88.8% and 95.8%, respectively. Sequencing analysis confirmed the accuracy of the mutation types. Among all the 8 mutation types detected, rpsL K43R (AAG → AGG), rpsL K88R (AAG → AGG) and rrs 514 A → C accounted for more than 90%. We concluded that MeltPro TB/STR represents a rapid and reliable assay for the detection of STR resistance in clinical isolates. Copyright © 2014. Published by Elsevier Ltd.

Changing Surface-Atmosphere Energy Exchange and Refreezing Capacity of the Lower Accumulation Area, West Greenland

NASA Astrophysics Data System (ADS)

Charalampidis, C.; van As, D.; Machguth, H.; Smeets, P.; van den Broeke, M. R.; Box, J. E.

2014-12-01

We present five years (2009-2013) of automatic weather station (AWS) data from the lower accumulation area (1840 m above sea level) of the Kangerlussuaq region, western Greenland ice sheet. The summers of 2010 and 2012 were both exceptionally warm, but only 2012 resulted in negative surface mass budget (SMB) and surface runoff. The observed runoff was due to a large ice fraction in the upper 10 m of firn that prevented melt water from percolating to available pore space below. Analysis of the in situ data reveals a relatively low 2012 summer albedo of ~0.7 as melt water was present at the surface. Consequently, during the 2012 melt season the surface absorbed 30% (213 MJ m-2) more solar radiation than in 2010. We drive a surface energy balance model with the AWS data to evaluate the seasonal and interannual variability of all surface energy fluxes. The model is able to reproduce the observed melt rates as well as the SMB for each season. While the drive for melt is solar radiation, year-to-year differences are controlled by terrestrial radiation, apart from 2012 when solar radiation dominated melt. Sensitivity tests reveal that 72% of the excess solar energy in 2012 was used for melt, corresponding to 40% (0.67 m) of the 2012 surface ablation. The remaining ablation (0.99 m) was primarily due to the relatively high atmospheric temperatures up to +2.6 °C daily average, indicating that 2012 would have been a negative SMB year in the lower accumulation area even without the melt-albedo feedback. Longer time series of SMB, regional temperature and remotely sensed albedo (MODIS) suggest that 2012 was the first negative SMB year with the lowest albedo at this elevation on record. The warming conditions of the last years resulted in enhanced melt and reduction of the refreezing capacity of the lower accumulation area. If the warming continues the lower accumulation area will be transformed into superimposed ice.

Multiplexed highly sensitive detections of cancer biomarkers in thermal space using encapsulated phase change nanoparticles

NASA Astrophysics Data System (ADS)

Ma, Liyuan; Hong, Yan; Ma, Zeyu; Kaittanis, Charalambos; Perez, J. Manuel; Su, Ming

2009-07-01

We describe a multiplexed highly sensitive method to detect cancer biomarkers using silica encapsulated phase change nanoparticles as thermal barcodes. During phase changes, nanoparticles absorb heat energy without much temperature rise and show sharp melting peaks (0.6 °C). A series of phase change nanoparticles of metals or alloys can be synthesized in such a way that they melt between 100 and 700 °C, thus the multiplicity could reach 1000. The method has high sensitivity (8 nM) that can be enhanced using materials with large latent heat, nanoparticles with large diameter, or reducing the grafting density of biomolecules on nanoparticles.

The genotyping of infectious bronchitis virus in Taiwan by a multiplex amplification refractory mutation system reverse transcription polymerase chain reaction.

PubMed

Huang, Shr-Wei; Ho, Chia-Fang; Chan, Kun-Wei; Cheng, Min-Chung; Shien, Jui-Hung; Liu, Hung-Jen; Wang, Chi-Young

2014-11-01

Infectious bronchitis virus (IBV; Avian coronavirus) causes acute respiratory and reproductive and urogenital diseases in chickens. Following sequence alignment of IBV strains, a combination of selective primer sets was designed to individually amplify the IBV wild-type and vaccine strains using a multiplex amplification refractory mutation system reverse transcription polymerase chain reaction (ARMS RT-PCR) approach. This system was shown to discriminate the IBV wild-type and vaccine strains. Moreover, an ARMS real-time RT-PCR (ARMS qRT-PCR) was combined with a high-resolution analysis (HRMA) to establish a melt curve analysis program. The specificity of the ARMS RT-PCR and the ARMS qRT-PCR was verified using unrelated avian viruses. Different melting temperatures and distinct normalized and shifted melting curve patterns for the IBV Mass, IBV H120, IBV TW-I, and IBV TW-II strains were detected. The new assays were used on samples of lung and trachea as well as virus from allantoic fluid and cell culture. In addition to being able to detect the presence of IBV vaccine and wild-type strains by ARMS RT-PCR, the IBV Mass, IBV H120, IBV TW-I, and IBV TW-II strains were distinguished using ARMS qRT-PCR by their melting temperatures and by HRMA. These approaches have acceptable sensitivities and specificities and therefore should be able to serve as options when carrying out differential diagnosis of IBV in Taiwan and China. © 2014 The Author(s).

Dynamics of diffusive bubble growth and pressure recovery in a bubbly rhyolitic melt embedded in an elastic solid

USGS Publications Warehouse

Chouet, Bernard A.; Dawson, Phillip B.; Nakano, Masaru

2006-01-01

We present a model of gas exsolution and bubble expansion in a melt supersaturated in response to a sudden pressure drop. In our model, the melt contains a suspension of gas bubbles of identical sizes and is encased in a penny-shaped crack embedded in an elastic solid. The suspension is modeled as a three-dimensional lattice of spherical cells with slight overlap, where each elementary cell consists of a gas bubble surrounded by a shell of volatile-rich melt. The melt is then subjected to a step drop in pressure, which induces gas exsolution and bubble expansion, resulting in the compression of the melt and volumetric expansion of the crack. The dynamics of diffusion-driven bubble growth and volumetric crack expansion span 9 decades in time. The model demonstrates that the speed of the crack response depends strongly on volatile diffusivity in the melt and bubble number density and is markedly sensitive to the ratio of crack thickness to crack radius and initial bubble radius but is relatively insensitive to melt viscosity. The net drop in gas concentration in the melt after pressure recovery represents only a small fraction of the initial concentration prior to the drop, suggesting the melt may undergo numerous pressure transients before becoming significantly depleted of gases. The magnitude of pressure and volume recovery in the crack depends sensitively on the size of the input-pressure transient, becoming relatively larger for smaller-size transients in a melt containing bubbles with initial radii less than 10-5 m. Amplification of the input transient may be large enough to disrupt the crack wall and induce brittle failure in the rock matrix surrounding the crack. Our results provide additional basis for the interpretation of volume changes in the magma conduit under Popocatépetl Volcano during Vulcanian degassing bursts in its eruptive activity in April–May 2000.

A singleplex real-time fluorescence resonance energy transfer PCR with melting curve analysis for the differential detection of Paragonimus heterotremus, Echinostoma malayanum and Fasciola gigantica eggs in faeces.

PubMed

Tantrawatpan, Chairat; Saijuntha, Weerachai; Manochantr, Sirikul; Kheolamai, Pakpoom; Thanchomnang, Tongjit; Sadaow, Lakkhana; Intapan, Pewpan M; Maleewong, Wanchai

2016-01-01

Because the eggs of Paragonimus, Echinostoma and Fasciola are very similar in size and shape, it is difficult to distinguish and accurately identify species by the morphology of their eggs, which is a standard diagnostic method. In this study, a novel assay combining a real-time fluorescence resonance energy transfer PCR and melting curve analysis using one set of primers and fluorophore-labelled hybridization probes specific for the 28S rDNA region was developed for the molecular detection of Paragonimus heterotremus, Echinostoma malayanum and Fasciola gigantica eggs. This assay could detect and distinguish P. heterotremus, E. malayanum and F. gigantica DNA with the distinct melting temperature (Tm) values of 57.99±0.08, 62.12±0.15 and 74.10±0.18, respectively. The assay can also be used to detect and distinguish DNA from P. bangkokensis, P. harinasutai, P. machorchis, E. revolutum, Hypodereum conoideum and F. hepatica, which have different Tm values. The sensitivity of this assay enabled the detection of one egg of P. heterotremus, E. malayanum or F. gigantica per 100 mg of faeces. In addition, the specificity testing showed no fluorescence signal for other parasites. Due to the sensitivity and specificity of our assay in detecting P. heterotremus, E. malayanum and F. gigantica, our method could be used to accurately diagnose these three medically important parasitic groups and has potential implications for molecular epidemiological investigations of human and/or animal infections. © The Author 2015. Published by Oxford University Press on behalf of Royal Society of Tropical Medicine and Hygiene. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Occurrence and mechanisms of impact melt emplacement at small lunar craters

NASA Astrophysics Data System (ADS)

Stopar, Julie D.; Hawke, B. Ray; Robinson, Mark S.; Denevi, Brett W.; Giguere, Thomas A.; Koeber, Steven D.

2014-11-01

Using observations from the Lunar Reconnaissance Orbiter Camera (LROC), we assess the frequency and occurrence of impact melt at simple craters less than 5 km in diameter. Nine-hundred-and-fifty fresh, randomly distributed impact craters were identified for study based on their maturity, albedo, and preservation state. The occurrence, frequency, and distribution of impact melt deposits associated with these craters, particularly ponded melt and lobate flows, are diagnostic of melt emplacement mechanisms. Like larger craters, those smaller than a few kilometers in diameter often exhibit ponded melt on the crater floor as well as lobate flows near the crater rim crest. The morphologies of these deposits suggest gravity-driven flow while the melt was molten. Impact melt deposits emplaced as veneers and ;sprays;, thin layers of ejecta that drape other crater materials, indicate deposition late in the cratering process; the deposits of fine sprays are particularly sensitive to degradation. Exterior melt deposits found near the rims of a few dozen craters are distributed asymmetrically around the crater and are rare at craters less than 2 km in diameter. Pre-existing topography plays a role in the occurrence and distribution of these melt deposits, particularly for craters smaller than 1 km in diameter, but does not account for all observed asymmetries in impact melt distribution. The observed relative abundance and frequency of ponded melt and flows in and around simple lunar craters increases with crater diameter, as was previously predicted from models. However, impact melt deposits are found more commonly at simple lunar craters (i.e., those less than a few kilometers in diameter) than previously expected. Ponded melt deposits are observed in roughly 15% of fresh craters smaller than 300 m in diameter and 80% of fresh craters between 600 m and 5 km in diameter. Furthermore, melt deposits are observed at roughly twice as many non-mare craters than at mare craters. We infer that the distributions and occurrences of impact melt are strongly influenced by impact velocity and angle, target porosity, pre-existing topography, and degradation. Additionally, areally small and volumetrically thin melt deposits are sensitive to mixing with solid debris and/or burial during the modification stage of impact cratering as well as post-cratering degradation. Thus, the production of melt at craters less than ∼800 m in diameter is likely greater than inferred from the present occurrence of melt deposits, which is rapidly affected by ongoing degradation processes.

Vanadium, sulfur, and iron valences in melt inclusions as a window into magmatic processes: A case study at Nyamuragira volcano, Africa

NASA Astrophysics Data System (ADS)

Head, Elisabet; Lanzirotti, Antonio; Newville, Matthew; Sutton, Stephen

2018-04-01

This study describes microscale sulfur (S), vanadium (V), and iron (Fe) K-edge X-ray absorption near edge structure (μ-XANES) spectroscopy measurements on olivine-hosted melt inclusions (MI) preserved in tephras (1986 and 2006) and lavas (1938 and 1948) erupted from Nyamuragira volcano (D.R. Congo, Africa). The S, V, and Fe spectroscopic data are used to constrain the evolution of oxygen fugacity (fO2) and sulfur speciation for the entrapped melts. Melt inclusions from lavas show evidence of post-entrapment crystallization and were thus reheated prior to μ-XANES analysis. The MI from tephra show no evidence of post-entrapment crystallization and were, therefore, not reheated. Sulfur, V, and Fe μ-XANES results from 1938, 1948, and 2006 eruptive materials are all similar within analytical uncertainty and provide similar average calculated melt fO2's based on XANES oxybarometry. However, olivine-hosted MI from the 1986 tephras yield significantly different S, V, and Fe XANES spectra when compared to MI from the other eruptions, with disagreement between calculated fO2's from the three valence state oxybarometers beyond the uncertainty of the calibration models. Their V μ-XANES spectra are also significantly more ordered and yield more reduced average V valence. The S μ-XANES spectra display a significantly more intense low-energy spectral resonance, which indicates differences in Fe-S bonding character, and greater variability in their measured sulfate content. These V and S spectroscopic features are best explained by crystallization of sub-micrometer magnetite and sulfide crystallites within the 1986 inclusions. The sensitivity of XANES spectroscopy to short-range order allows these crystallites to be recognized even though they are not easily detected by imaging analysis. This shows that V and S μ-XANES are potentially highly sensitive tools for identifying the presence of volumetrically minor amounts of spinel and sulfide within inclusions extracted from rapidly-cooled samples of tephra. Additionally, the observation that rehomogenized 1938 and 1948 inclusions from lava yield similar S, V, and Fe XANES spectra to the 2006 inclusions from tephra may be an encouraging indication that rehomogenization appears to have enabled the successful recovery of their pre-eruptive fO2, despite their complex post-eruptive histories.

Development of SYBR Green I Based Real-Time RT-PCR Assay for Specific Detection of Watermelon silver mottle Virus.

PubMed

Rao, Xueqin; Sun, Jie

2015-09-01

Watermelon silver mottle virus (WSMoV), which belongs to the genus Tospovirus , causes significant loss in Cucurbitaceae plants. Development of a highly sensitive and reliable detection method for WSMoV. Recombinant plasmids for targeting the sequence of nucleocapsid protein gene of WSMoV were constructed. SYBR Green I real-time PCR was established and evaluated with standard recombinant plasmids and 27 watermelon samples showing WSMoV infection symptoms. The recombinant plasmid was used as template for SYBR Green I real-time PCR to generate standard and melting curves. Melting curve analysis indicated no primer-dimers and non-specific products in the assay. No cross-reaction was observed with Capsicum chlorosis virus (genus Tospovirus ) and Cucumber mosaic virus (genus Cucumovirus). Repeatability tests indicated that inter-assay variability of the Ct values was 1.6%. A highly sensitive, reliable and rapid detection method of SYBR Green I real-time PCR for timely detection of WSMoV plants and vector thrips was established, which will facilitate disease forecast and control.

Investigation of land ice-ocean interaction with a fully coupled ice-ocean model: 2. Sensitivity to external forcings

NASA Astrophysics Data System (ADS)

Goldberg, D. N.; Little, C. M.; Sergienko, O. V.; Gnanadesikan, A.; Hallberg, R.; Oppenheimer, M.

2012-06-01

A coupled ice stream-ice shelf-ocean cavity model is used to assess the sensitivity of the coupled system to far-field ocean temperatures, varying from 0.0 to 1.8°C, as well as sensitivity to the parameters controlling grounded ice flow. A response to warming is seen in grounding line retreat and grounded ice loss that cannot be inferred from the response of integrated melt rates alone. This is due to concentrated thinning at the ice shelf lateral margin, and to processes that contribute to this thinning. Parameters controlling the flow of grounded ice have a strong influence on the response to sub-ice shelf melting, but this influence is not seen until several years after an initial perturbation in temperatures. The simulated melt rates are on the order of that observed for Pine Island Glacier in the 1990s. However, retreat rates are much slower, possibly due to unrepresented bedrock features.

Recovering Paleo-Records from Antarctic Ice-Cores by Coupling a Continuous Melting Device and Fast Ion Chromatography.

PubMed

Severi, Mirko; Becagli, Silvia; Traversi, Rita; Udisti, Roberto

2015-11-17

Recently, the increasing interest in the understanding of global climatic changes and on natural processes related to climate yielded the development and improvement of new analytical methods for the analysis of environmental samples. The determination of trace chemical species is a useful tool in paleoclimatology, and the techniques for the analysis of ice cores have evolved during the past few years from laborious measurements on discrete samples to continuous techniques allowing higher temporal resolution, higher sensitivity and, above all, higher throughput. Two fast ion chromatographic (FIC) methods are presented. The first method was able to measure Cl(-), NO3(-) and SO4(2-) in a melter-based continuous flow system separating the three analytes in just 1 min. The second method (called Ultra-FIC) was able to perform a single chromatographic analysis in just 30 s and the resulting sampling resolution was 1.0 cm with a typical melting rate of 4.0 cm min(-1). Both methods combine the accuracy, precision, and low detection limits of ion chromatography with the enhanced speed and high depth resolution of continuous melting systems. Both methods have been tested and validated with the analysis of several hundred meters of different ice cores. In particular, the Ultra-FIC method was used to reconstruct the high-resolution SO4(2-) profile of the last 10,000 years for the EDML ice core, allowing the counting of the annual layers, which represents a key point in dating these kind of natural archives.

Identification case of evidence in timber tracing of Pinus radiate, using high-resolution melting (HRM) analysis.

PubMed

Solano, Jaime; Anabalón, Leonardo; Encina, Francisco

2016-03-01

Fast, accurate detection of plant species and their hybrids using molecular tools will facilitate assessment and monitoring of timber tracing evidence. In this study the origin of unknown pine samples is determined for a case of timber theft in the region of Araucania southern Chile. We evaluate the utility of the trnL marker region for species identification applied to pine wood based on High Resolution Melting. This efficient tracing methods can be incorporated into forestry applications such as certification of origin. The object of this work was genotype identification using high-resolution melting (HRM) and trnL approaches for Pinus radiata (Don) in timber tracing evidence. Our results indicate that trnL is a very sensitive marker for delimiting species and HRM analysis was used successfully for genotyping Pinus samples for timber tracing purposes. Genotyping samples by HRM analysis with the trnL1 approach allowed us to differentiate two wood samples from the Pinaceae family: Pinus radiata (Don) and Pseudotsuga menziesii (Mirb.) Franco. The same approach with Pinus trnL wood was not able to discriminate between samples of Pinus radiata, indicating that the samples were genetically indistinguishable, possibly because they have the same genotype at this locus. Timber tracing with HRM analysis is expected to contribute to future forest certification schemes, control of illegal trading, and molecular traceability of Pinus spp. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

High-Resolution Melting-Curve Analysis of obg Gene to Differentiate the Temperature-Sensitive Mycoplasma synoviae Vaccine Strain MS-H from Non-Temperature-Sensitive Strains

PubMed Central

Shahid, Muhammad A.; Markham, Philip F.; Marenda, Marc S.; Agnew-Crumpton, Rebecca; Noormohammadi, Amir H.

2014-01-01

Temperature-sensitive (ts +) vaccine strain MS-H is the only live attenuated M. synoviae vaccine commercially available for use in poultry. With increasing use of this vaccine to control M. synoviae infections, differentiation of MS-H from field M. synoviae strains and from rarely occurring non-temperature-sensitive (ts –) MS-H revertants has become important, especially in countries where local strains are indistinguishable from MS-H by sequence analysis of variable lipoprotein haemagglutinin (vlhA) gene. Single nucleotide polymorphisms (SNPs) in the obg of MS-H have been found to associate with ts phenotype. In this study, four PCRs followed by high-resolution melting (HRM)-curve analysis of the regions encompassing these SNPs were developed and evaluated for their potential to differentiate MS-H from 36 M. synoviae strains/isolates. The nested-obg PCR-HRM differentiated ts + MS-H vaccine not only from field M. synoviae strains/isolates but also from ts – MS-H revertants. The mean genotype confidence percentages, 96.9±3.4 and 8.8±11.2 for ts + and ts – strains, respectively, demonstrated high differentiating power of the nested-obg PCR-HRM. Using a combination of nested-obg and obg-F3R3 PCR-HRM, 97% of the isolates/strains were typed according to their ts phenotype with all MS-H isolates typed as MS-H. A set of respiratory swabs from MS-H vaccinated specific pathogen free chickens and M. synoviae infected commercial chicken flocks were tested using obg PCR-HRM system and results were consistent with those of vlhA genotyping. The PCR-HRM system developed in this study, proved to be a rapid and reliable tool using pure M. synoviae cultures as well as direct clinical specimens. PMID:24643035

Continuous analysis of phosphate in a Greenland shallow ice core

NASA Astrophysics Data System (ADS)

Kjær, Helle Astrid; Svensson, Anders; Bigler, Matthias; Vallelonga, Paul; Kettner, Ernesto; Dahl-Jensen, Dorthe

2010-05-01

Phosphate is an important and sometimes limiting nutrient for primary production in the oceans. Because of deforestation and the use of phosphate as a fertilizer changes in the phosphate cycle have occurred over the last centuries. On longer time scales, sea level changes are thought to have also caused changes in the phosphate cycle. Analyzing phosphate concentrations in ice cores may help to gain important knowledge about those processes. In the present study, we attach a phosphate detection line to an existing continuous flow analysis (CFA) setup for ice core analysis at the University of Copenhagen. The CFA system is optimized for high-resolution measurements of insoluble dust particles, electrolytic melt water conductivity, and the concentrations of ammonium and sodium. For the phosphate analysis we apply a continuous and highly sensitive absorption method that has been successfully applied to determine phosphate concentrations of sea water (Zhang and Chi, 2002). A line of melt water from the CFA melt head (1.01 ml per minute) is combined with a molybdate blue reagent and an ascorbic acid buffer. An uncompleted reaction takes place in five meters of heated mixing coils before the absorption measurement at a wavelength of 710 nanometer takes place in a 2 m long liquid waveguide cell (LWCC) with an inner volume of 0.5 ml. The method has a detection limit of around 0.1 ppb and we are currently investigating a possible interference from molybdate reacting with silicates that are present in low amounts in the ice. Preliminary analysis of early Holocene samples from the NGRIP ice core show phosphate concentration values of a few ppb. In this study, we will attempt to determine past levels of phosphate in a shallow Northern Greenland firn core with an annual layer thickness of about 20 cm ice equivalent. With a melt speed of 2.5 cm ice per minute our method should allow the resolution of any seasonal variability in phosphate concentrations.

High-resolution melt PCR analysis for genotyping of Ureaplasma parvum isolates directly from clinical samples.

PubMed

Payne, Matthew S; Tabone, Tania; Kemp, Matthew W; Keelan, Jeffrey A; Spiller, O Brad; Newnham, John P

2014-02-01

Ureaplasma sp. infection in neonates and adults underlies a variety of disease pathologies. Of the two human Ureaplasma spp., Ureaplasma parvum is clinically the most common. We have developed a high-resolution melt (HRM) PCR assay for the differentiation of the four serovars of U. parvum in a single step. Currently U. parvum strains are separated into four serovars by sequencing the promoter and coding region of the multiple-banded antigen (MBA) gene. We designed primers to conserved sequences within this region for PCR amplification and HRM analysis to generate reproducible and distinct melt profiles that distinguish clonal representatives of serovars 1, 3, 6, and 14. Furthermore, our HRM PCR assay could classify DNA extracted from 74 known (MBA-sequenced) test strains with 100% accuracy. Importantly, HRM PCR was also able to identify U. parvum serovars directly from 16 clinical swabs. HRM PCR performed with DNA consisting of mixtures of combined known serovars yielded profiles that were easily distinguished from those for single-serovar controls. These profiles mirrored clinical samples that contained mixed serovars. Unfortunately, melt curve analysis software is not yet robust enough to identify the composition of mixed serovar samples, only that more than one serovar is present. HRM PCR provides a single-step, rapid, cost-effective means to differentiate the four serovars of U. parvum that did not amplify any of the known 10 serovars of Ureaplasma urealyticum tested in parallel. Choice of reaction reagents was found to be crucial to allow sufficient sensitivity to differentiate U. parvum serovars directly from clinical swabs rather than requiring cell enrichment using microbial culture techniques.

Identification of squid species by melting temperature shifts on fluorescence melting curve analysis (FMCA) using single dual-labeled probe

NASA Astrophysics Data System (ADS)

Koh, Eunjung; Song, Ha Jeong; Kwon, Na Young; Kim, Gi Won; Lee, Kwang Ho; Jo, Soyeon; Park, Sujin; Park, Jihyun; Park, Eun Kyeong; Hwang, Seung Yong

2017-06-01

Real time PCR is a standard method for identification of species. One of limitations of the qPCR is that there would be false-positive result due to mismatched hybridization between target sequence and probe depending on the annealing temperature in the PCR condition. As an alternative, fluorescence melting curve analysis (FMCA) could be applied for species identification. FMCA is based on a dual-labeled probe. Even with subtle difference of target sequence, there are visible melting temperature (Tm) shift. One of FMCA applications is distinguishing organisms distributed and consumed globally as popular food ingredients. Their prices are set by species or country of origin. However, counterfeiting or distributing them without any verification procedure are becoming social problems and threatening food safety. Besides distinguishing them in naked eye is very difficult and almost impossible in any processed form. Therefore, it is necessary to identify species in molecular level. In this research three species of squids which have 1-2 base pair differences each are selected as samples since they have the same issue. We designed a probe which perfectly matches with one species and the others mismatches 2 and 1 base pair respectively and labeled with fluorophore and quencher. In an experiment with a single probe, we successfully distinguished them by Tm shift depending on the difference of base pair. By combining FMCA and qPCR chip, smaller-scale assay with higher sensitivity and resolution could be possible, andc furthermore, enabling results analysis with smart phone would realize point-of-care testing (POCT).

Competitive PCR-High Resolution Melting Analysis (C-PCR-HRMA) for large genomic rearrangements (LGRs) detection: A new approach to assess quantitative status of BRCA1 gene in a reference laboratory.

PubMed

Minucci, Angelo; De Paolis, Elisa; Concolino, Paola; De Bonis, Maria; Rizza, Roberta; Canu, Giulia; Scaglione, Giovanni Luca; Mignone, Flavio; Scambia, Giovanni; Zuppi, Cecilia; Capoluongo, Ettore

2017-07-01

Evaluation of copy number variation (CNV) in BRCA1/2 genes, due to large genomic rearrangements (LGRs), is a mandatory analysis in hereditary breast and ovarian cancers families, if no pathogenic variants are found by sequencing. LGRs cannot be detected by conventional methods and several alternative methods have been developed. Since these approaches are expensive and time consuming, identification of alternative screening methods for LGRs detection is needed in order to reduce and optimize the diagnostic procedure. The aim of this study was to investigate a Competitive PCR-High Resolution Melting Analysis (C-PCR-HRMA) as molecular tool to detect recurrent BRCA1 LGRs. C-PCR-HRMA was performed on exons 3, 14, 18, 19, 20 and 21 of the BRCA1 gene; exons 4, 6 and 7 of the ALB gene were used as reference fragments. This study showed that it is possible to identify recurrent BRCA1 LGRs, by melting peak height ratio between target (BRCA1) and reference (ALB) fragments. Furthermore, we underline that a peculiar amplicon-melting profile is associated to a specific BRCA1 LGR. All C-PCR-HRMA results were confirmed by Multiplex ligation-dependent probe amplification. C-PCR-HRMA has proved to be an innovative, efficient and fast method for BRCA1 LGRs detection. Given the sensitivity, specificity and ease of use, c-PCR-HRMA can be considered an attractive and powerful alternative to other methods for BRCA1 CNVs screening, improving molecular strategies for BRCA testing in the context of Massive Parallel Sequencing. Copyright © 2017 Elsevier B.V. All rights reserved.

Seasonal and inter-annual snowmelt patterns in the southern Sierra Nevada, California

NASA Astrophysics Data System (ADS)

Musselman, K. N.; Molotch, N. P.; Margulis, S. A.

2012-12-01

In the Sierra Nevada, seasonal snow represents a critical component of California's water resource infrastructure in that it affords reliable water during otherwise arid summers. Complex spatial, seasonal and inter-annual snowmelt patterns determine when and where that meltwater is available. Our knowledge of snowmelt dynamics is typically limited to what we can infer from sparse, point-scale snow measurement stations. Limitations such as these motivate the use of numerical snowmelt models. We evaluate the ability of the Alpine3D model system to represent three years of snow dynamics over an 1800 km2 area of Sequoia National Park. The domain spans a 3600 m elevation gradient and ecosystems ranging from semi-arid grasslands to massive sequoia stands to alpine tundra. The model results were evaluated against data from a multi-scale measurement campaign that included airborne LiDAR, clusters of snow depth sensors, repeated manual snow surveys, and automated SWE stations. Compared to these measurements, Alpine3D consistently performed well in middle elevation conifer forests; compared to LiDAR data, the mean snow depth error in forested regions was < 2%. The model also simulated the snow disappearance date within two days of that measured by regional automated sensors. At upper elevations, however, the model tended to overestimate SWE by 50% to as much as 100% in some areas and the errors were linearly correlated (R2 > 0.80, p<0.01) with the distance of the SWE measurements from the nearest precipitation gauge used to derive the model forcing. The results suggest that Alpine3D is highly accurate during the melt season and that precipitation uncertainty may be a critical limitation on snow model accuracy. Finally, an analysis of seasonal and inter-annual snowmelt patterns highlighted distinct melt differences between lower, middle, and upper elevations. Snowmelt was generally most frequent (70% - 95% of the snow-covered season) at the lower elevations where snow cover was episodic and seasonal mean melt rates computed on days when melt was simulated were generally low (< 3 mm day-1). At upper elevations, melt occurred during less than 65% of the snow-covered period, occurred later in the season and mean melt rates were the highest of the region (> 6 mm day-1). Middle elevations remained continuously snow covered throughout the winter and early spring, were prone to frequent but intermittent melt, and provided the most sustained period of seasonal mean snowmelt (~ 5 mm day-1). The melt dynamics (e.g. timing and melt rate) unique to these middle elevations may be critical to the local forest ecosystem. Furthermore, the three years evaluated in this study indicate a marked sensitivity of this elevation range to seasonal meteorology, suggesting that it could be highly sensitive to future changes in climate.

Explosive performance of HMX/NTO co-crystal

NASA Astrophysics Data System (ADS)

Li, J. C.; Jiao, Q. J.; Gong, Y. G.; Wang, Y. Y.; Liang, T.; Sun, J.

2018-01-01

A new co-crystal explosive of 1,3,5,7-tetranitro-1,3,5,7-tetrazocane (HMX) and 3-nitro-1, 2, 4-triazol-5-one (NTO) in a molar ratio of 1:1 has been prepared by solvent/anti-solvent method. The SEM photographs show that HMX/NTO co-crystals are distinctly different from HMX and NTO crystals. The co-crystals are prisms with well formed crystal surfaces. Thermal analysis results indicate the melting point of the co-crystal is 29.3 °Chigher than that of NTO. Moreover, the co-crystal exhibits a modified mechanical sensitivity. The characteristic height (H50) of impact sensitivity increases 14.8cm, and the explosion percentage (P) of friction sensitivity decreases by 40% compared with HMX. The HMX/NTO co-crystals possess good thermal property and low sensitivity, which mean huge advantages in blasting engineering.

High-performance dye-sensitized solar cells based on solvent-free electrolytes produced from eutectic melts.

PubMed

Bai, Yu; Cao, Yiming; Zhang, Jing; Wang, Mingkui; Li, Renzhi; Wang, Peng; Zakeeruddin, Shaik M; Grätzel, Michael

2008-08-01

Low-cost excitonic solar cells based on organic optoelectronic materials are receiving an ever-increasing amount of attention as potential alternatives to traditional inorganic photovoltaic devices. In this rapidly developing field, the dye-sensitized solar cell (DSC) has achieved so far the highest validated efficiency of 11.1% (ref. 2) and remarkable stability. However, the cells with the best performance use volatile solvents in their electrolytes, which may be prohibitive for outdoor solar panels in view of the need for robust encapsulation. Solvent-free room-temperature ionic liquids have been pursued as an attractive solution to this dilemma, and device efficiencies of over 7% were achieved by using some low-viscosity formulations containing 1-ethyl-3-methylimidazolium thiocyanate, selenocyanate, tricyanomethide or tetracyanoborate. Unfortunately, apart from tetracyanoborate, all of these low-viscosity melts proved to be unstable under prolonged thermal stress and light soaking. Here, we introduce the concept of using eutectic melts to produce solvent-free liquid redox electrolytes. Using a ternary melt in conjunction with a nanocrystalline titania film and the amphiphilic heteroleptic ruthenium complex Z907Na (ref. 10) as a sensitizer, we reach excellent stability and an unprecedented efficiency of 8.2% under air-mass 1.5 global illumination. Our results are of importance to realize large-scale outdoor applications of mesoscopic DSCs.

Silicate melts: The “anomalous” pressure dependence of the viscosity

NASA Astrophysics Data System (ADS)

Bottinga, Y.; Richet, P.

1995-07-01

The decrease of the specific volume, when the extent of polymerization diminishes, is a cause of the pressure sensitivity of the viscosity of silicate melts. This effect can be explained by means of the Adam and Gibbs (1965) theory, taking into account the pressure dependence of the degree of polymerization of the melt and its influence on the configurational entropy. At temperatures close to their glass transitions, liquid silica and SiO2sbnd Na2O melts have configurational entropies that are probably due to the mixing of their bridging and nonbridging oxygen atoms.

Rapid identification of apolipoprotein E genotypes by high-resolution melting analysis in Chinese Han and African Fang populations.

PubMed

Zhan, Xiu-Hui; Zha, Guang-Cai; Jiao, Ji-Wei; Yang, Li-Ye; Zhan, Xiao-Fen; Chen, Jiang-Tao; Xie, Dong-DE; Eyi, Urbano Monsuy; Matesa, Rocio Apicante; Obono, Maximo Miko Ondo; Ehapo, Carlos Sala; Wei, Er-Jia; Zheng, Yu-Zhong; Yang, Hui; Lin, Min

2015-02-01

Apolipoprotein E (APOE) gene polymorphism can affect APOE gene transcription, serum lipid levels and repair of tissue damage, which could place individuals at serious risk of cardiovascular disease or certain infectious diseases. Recently, high-resolution melting (HRM) analysis was reported to be a simple, inexpensive, accurate and sensitive method for the genotyping or/and scanning of rare mutations. For this reason, an HRM analysis was used in the present study for APOE genotyping in the Southern Chinese Han and African Fang populations. A total of 100 healthy Southern Chinese Han and 175 healthy African Fang individuals attended the study. Polymerase chain reaction-DNA sequencing was used as a reference method for the genotyping of these samples. The six APOE genotypes could all be rapidly and efficiently identified by HRM analysis, and 100% concordance was found between the HRM analysis and the reference method. The allele frequencies of APOE in the Southern Chinese Han population were 7.0, 87.5 and 5.5% for ɛ2, ɛ3 and ɛ4, respectively. In the African Fang population, the allele frequencies of APOE were 24.3, 65.7 and 10.0% for ɛ2, ɛ3 and ɛ4, respectively. A statistically significant difference was found between the allele frequencies between the populations (P<0.05). In conclusion, the present study revealed the molecular characterization of APOE gene polymorphism in the Han population from the Chaozhou region of Southern China and the Fang population from Equatorial Guinea. The findings of the study indicated that HRM analysis could be used as an accurate and sensitive method for the rapid screening and identification of APOE genotypes in prospective clinical and population genetic analyses.

Channelized melting drives thinning under Dotson ice shelf, Western Antarctic Ice Sheet

NASA Astrophysics Data System (ADS)

Gourmelen, N.; Goldberg, D.; Snow, K.; Henley, S. F.; Bingham, R. G.; Kimura, S.; Hogg, A.; Shepherd, A.; Mouginot, J.; Lenaerts, J.; Ligtenberg, S.; Van De Berg, W. J.

2017-12-01

The majority of meteoric ice that forms in West Antarctica leaves the ice sheet through floating ice shelves, many of which have been thinning substantially over the last 25 years. A significant proportion of ice-shelf thinning has been driven by submarine melting facilitated by increased access of relatively warm (>0.6oC) modified Circumpolar Deep Water to sub-shelf cavities. Ice shelves play a significant role in stabilising the ice sheet from runaway retreat and regulating its contribution to sea level change. Ice-shelf melting has also been implicated in sustaining high primary productivity in Antarctica's coastal seas. However, these processes vary regionally and are not fully understood. Under some ice shelves, concentrated melting leads to the formation of inverted channels. These channels guide buoyant melt-laden outflow, which can lead to localised melting of the sea ice cover. The channels may also potentially lead to heightened crevassing, which in turn affects ice-shelf stability. Meanwhile, numerical studies suggest that buttressing loss is sensitive to the location of ice removal within an ice-shelf. Thus it is important that we observe spatial patterns, as well as magnitudes, of ice-shelf thinning, in order to improve understanding of the ocean drivers of thinning and of their impacts on ice-shelf stability. Here we show from high-resolution altimetry measurements acquired between 2010 to 2016 that Dotson Ice Shelf, West Antarctica, thins in response to basal melting focussed along a single 5 km-wide and 60 km-long channel extending from the ice shelf's grounding zone to its calving front. The coupled effect of geostrophic circulation and ice-shelf topography leads to the observed concentration of basal melting. Analysis of previous datasets suggests that this process has been ongoing for at least the last 25 years. If focused thinning continues at present rates, the channel would melt through within 40-50 years, almost two centuries before it is projected from the average thinning rate. Our findings provide evidence of basal melt-driven sub-ice shelf channel formation and its potential for accelerating the weakening of ice shelves.

Rapid identification of the NAT2 genotype in tuberculosis patients by multicolor melting curve analysis.

PubMed

Hu, Yanjie; Chen, Suting; Yu, Xia; Dai, Guangming; Dong, Lingling; Li, Yunxu; Zhao, Liping; Huang, Hairong

2016-07-01

NAT2 genotype is an indicator for isoniazid dosage adjusting for tuberculosis treatment. Multicolor melting curve analysis (MMCA) was evaluated as a potential method for NAT2 genotyping. 352 blood samples were analyzed by MMCA kit (Zeesan Biotech Co., Xiamen, China) targeting NAT2 SNPs at T341C, C481T, G590A and G857A, and direct sequencing was used as control. The sensitivity, specificity and accuracy of the MMCA assay for rapid NAT2 genotype detection were 97.9, 99.6 and 99.1% respectively, whereas for intermediate genotypes the values were 99.5, 98.7 and 99.1%, respectively, and for slow genotypes the values were 100% for the three aspects. The 24 saliva and blood for the control samples were also successfully analyzed using the MMCA assay, both produced uniform outcomes. The MMCA assay described in our study is very promising for the efficient determination of NAT2 genotype, and can facilitate the personalized dosing of isoniazid.

Molecular differentiation of three canine and feline hookworms in South China through HRM analysis.

PubMed

Wang, M W; Yan, X X; Hang, J X; Shi, X L; Fu, Y Q; Zhang, P; Yang, F; Pan, W D; Li, G Q

2018-02-05

To investigate the prevalence of canine and feline hookworms in South China, and to assess the risk of zoonotic hookworms to humans, one pair of primers (HRM-F/HRM-R) was designed to establish a high-resolution melting (HRM) method based on internal transcribed spacer 1 (ITS-1) rDNA for the detection of Ancylostoma ceylanicum, A. caninum and A. tubaeforme infection. The results showed that the HRM for the three hookworms produced different melting-curve profiles, where melting temperature (T m) values were 84.50°C for A. ceylanicum, 82.25°C for A. caninum and 81.73°C for A. tubaeforme, respectively. The reproducibility of intra- and inter-assay melting curves was almost perfect. The lowest concentration detected was about 5.69 ×10-4 g/μl. The HRM detection results from 18 canine and feline hookworm samples were in complete accordance with their sequencing results. The HRM method was more sensitive than the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) technique in the detection of 98 clinical samples. It is concluded that the HRM method can differentiate between A. ceylanicum, A. caninum, A. tubaeforme and their mixed infections, which may provide important technical support for the zoonotic risk assessment and molecular epidemiological survey of canine and feline hookworms.

Candidate DNA Barcode Tags Combined With High Resolution Melting (Bar-HRM) Curve Analysis for Authentication of Senna alexandrina Mill. With Validation in Crude Drugs.

PubMed

Mishra, Priyanka; Shukla, Ashutosh K; Sundaresan, Velusamy

2018-01-01

Senna alexandrina (Fabaceae) is a globally recognized medicinal plant for its laxative properties as well as the only source of sennosides, and is highly exported bulk herb from India. Its major procurement is exclusively from limited cultivation, which leads to risks of deliberate or unintended adulteration. The market raw materials are in powdered or finished product form, which lead to difficulties in authentication. Here, DNA barcode tags based on chloroplast genes ( rbcL and matK ) and intergenic spacers ( psbA-trnH and ITS ) were developed for S. alexandrina along with the allied species. The ability and performance of the ITS1 region to discriminate among the Senna species resulted in the present proposal of the ITS1 tags as successful barcode. Further, these tags were coupled with high-resolution melting (HRM) curve analysis in a real-time PCR genotyping method to derive Bar-HRM (Barcoding-HRM) assays. Suitable HRM primer sets were designed through SNP detection and mutation scanning in genomic signatures of Senna species. The melting profiles of S. alexandrina and S . italica subsp. micrantha were almost identical and the remaining five species were clearly separated so that they can be differentiated by HRM method. The sensitivity of the method was utilized to authenticate market samples [Herbal Sample Assays (HSAs)]. HSA01 ( S. alexandrina crude drug sample from Bangalore) and HSA06 ( S. alexandrina crude drug sample from Tuticorin, Tamil Nadu, India) were found to be highly contaminated with S . italica subsp. micrantha . Species admixture samples mixed in varying percentage was identified sensitively with detection of contamination as low as 1%. The melting profiles of PCR amplicons are clearly distinct, which enables the authentic differentiation of species by the HRM method. This study reveals that DNA barcoding coupled with HRM is an efficient molecular tool to authenticate Senna herbal products in the market for quality control in the drug supply chain. CIMAP Communication Number: CIMAP/PUB/2017/31.

Candidate DNA Barcode Tags Combined With High Resolution Melting (Bar-HRM) Curve Analysis for Authentication of Senna alexandrina Mill. With Validation in Crude Drugs

PubMed Central

Mishra, Priyanka; Shukla, Ashutosh K.; Sundaresan, Velusamy

2018-01-01

Senna alexandrina (Fabaceae) is a globally recognized medicinal plant for its laxative properties as well as the only source of sennosides, and is highly exported bulk herb from India. Its major procurement is exclusively from limited cultivation, which leads to risks of deliberate or unintended adulteration. The market raw materials are in powdered or finished product form, which lead to difficulties in authentication. Here, DNA barcode tags based on chloroplast genes (rbcL and matK) and intergenic spacers (psbA-trnH and ITS) were developed for S. alexandrina along with the allied species. The ability and performance of the ITS1 region to discriminate among the Senna species resulted in the present proposal of the ITS1 tags as successful barcode. Further, these tags were coupled with high-resolution melting (HRM) curve analysis in a real-time PCR genotyping method to derive Bar-HRM (Barcoding-HRM) assays. Suitable HRM primer sets were designed through SNP detection and mutation scanning in genomic signatures of Senna species. The melting profiles of S. alexandrina and S. italica subsp. micrantha were almost identical and the remaining five species were clearly separated so that they can be differentiated by HRM method. The sensitivity of the method was utilized to authenticate market samples [Herbal Sample Assays (HSAs)]. HSA01 (S. alexandrina crude drug sample from Bangalore) and HSA06 (S. alexandrina crude drug sample from Tuticorin, Tamil Nadu, India) were found to be highly contaminated with S. italica subsp. micrantha. Species admixture samples mixed in varying percentage was identified sensitively with detection of contamination as low as 1%. The melting profiles of PCR amplicons are clearly distinct, which enables the authentic differentiation of species by the HRM method. This study reveals that DNA barcoding coupled with HRM is an efficient molecular tool to authenticate Senna herbal products in the market for quality control in the drug supply chain. CIMAP Communication Number: CIMAP/PUB/2017/31 PMID:29593755

Anatomy of a late spring snowfall on sea ice

NASA Astrophysics Data System (ADS)

Perovich, Donald; Polashenski, Christopher; Arntsen, Alexandra; Stwertka, Carolyn

2017-03-01

Spring melt initiation is a critical process for Arctic sea ice. Melting conditions decrease surface albedo at a time of high insolation, triggering powerful albedo feedback. Weather events during melt initiation, such as new snowfalls, can stop or reverse the albedo decline, however. Here we present field observations of such a snow event and demonstrate its enduring impact through summer. Snow fell 3-6 June 2014 in the Chukchi Sea, halting melt onset. The snow not only raised albedo but also provided a significant negative latent heat flux, averaging -51 W m-2 from 3 to 6 June. The snowfall delayed sustained melt by 11 days, creating cascading impacts on surface energy balance that totaled some 135 MJ/m2 by mid-August. The findings highlight the sensitivity of sea ice conditions on seasonal time scales to melt initiation processes.

Single-Molecule Denaturation Mapping of Genomic DNA in Nanofluidic Channels

NASA Astrophysics Data System (ADS)

Reisner, Walter; Larsen, Niels; Kristensen, Anders; Tegenfeldt, Jonas O.; Flyvbjerg, Henrik

2009-03-01

We have developed a new DNA barcoding technique based on the partial denaturation of extended fluorescently labeled DNA molecules. We partially melt DNA extended in nanofluidic channels via a combination of local heating and added chemical denaturants. The melted molecules, imaged via a standard fluorescence videomicroscopy setup, exhibit a nonuniform fluorescence profile corresponding to a series of local dips and peaks in the intensity trace along the stretched molecule. We show that this barcode is consistent with the presence of locally melted regions and can be explained by calculations of sequence-dependent melting probability. We believe this melting mapping technology is the first optically based single molecule technique sensitive to genome wide sequence variation that does not require an additional enzymatic labeling or restriction scheme.

THE MELTING MECHANISM OF DNA TETHERED TO A SURFACE

PubMed Central

QAMHIEH, KHAWLA; WONG, KA-YIU; LYNCH, GILLIAN C.; PETTITT, B. MONTGOMERY

2009-01-01

The details of melting of DNA immobilized on a chip or nanoparticle determines the sensitivity and operating characteristics of many analytical and synthetic biotechnological devices. Yet, little is known about the differences in how the DNA melting occurs between a homogeneous solution and that on a chip. We used molecular dynamics simulations to explore possible pathways for DNA melting on a chip. Simulation conditions were chosen to ensure that melting occurred in a submicrosecond timescale. The temperature was set to 400 K and the NaCl concentration was set to 0.1 M. We found less symmetry than in the solution case where for oligomeric double-stranded nucleic acids both ends melted with roughly equal probability. On a prepared silica surface we found melting is dominated by fraying from the end away from the surface. Strand separation was hindered by nonspecific surface adsorption at this temperature. At elevated temperatures the melted DNA was attracted to even uncharged organically coated surfaces demonstrating surface fouling. While hybridization is not the simple reverse of melting, this simulation has implications for the kinetics of hybridization. PMID:19802357

A Two-Dimensional Liquid Structure Explains the Elevated Melting Temperatures of Gallium Nanoclusters.

PubMed

Steenbergen, Krista G; Gaston, Nicola

2016-01-13

Melting in finite-sized materials differs in two ways from the solid-liquid phase transition in bulk systems. First, there is an inherent scaling of the melting temperature below that of the bulk, known as melting point depression. Second, at small sizes changes in melting temperature become nonmonotonic and show a size-dependence that is sensitive to the structure of the particle. Melting temperatures that exceed those of the bulk material have been shown to occur for a very limited range of nanoclusters, including gallium, but have still never been ascribed a convincing physical explanation. Here, we analyze the structure of the liquid phase in gallium clusters based on molecular dynamics simulations that reproduce the greater-than-bulk melting behavior observed in experiments. We observe persistent nonspherical shape distortion indicating a stabilization of the surface, which invalidates the paradigm of melting point depression. This shape distortion suggests that the surface acts as a constraint on the liquid state that lowers its entropy relative to that of the bulk liquid and thus raises the melting temperature.

Monitoring food pathogens: Novel instrumentation for cassette PCR testing

PubMed Central

Hunt, Darin; Figley, Curtis; Lauzon, Jana; Figley, Rachel; Pilarski, Linda M.; McMullen, Lynn M.; Pilarski, Patrick M.

2018-01-01

In this manuscript, we report the design and development of a fast, reliable instrument to run gel-based cassette polymerase chain reactions (PCR). Here termed the GelCycler Mark II, our instrument is a miniaturized molecular testing system that is fast, low cost and sensitive. Cassette PCR utilizes capillary reaction units that carry all reagents needed for PCR, including primers and Taq polymerase, except the sample, which is loaded at the time of testing. Cassette PCR carries out real time quantitative PCR followed by melt curve analysis (MCA) to verify amplicon identity at the expected melt temperature (Tm). The cassette PCR technology is well developed, particularly for detecting pathogens, and has been rigorously validated for detecting pathogenic Escherichia coli in meat samples. However, the work has been hindered by the lack of a robust and stable instrument to carry out the PCR, which requires fast and accurate temperature regulation, improved light delivery and fluorescent recording, and faster PCR reactions that maintain a high sensitivity of detection. Here, we report design and testing of a new instrument to address these shortcomings and to enable standardized testing by cassette PCR and commercial manufacture of a robust and accurate instrument that can be mass produced to deliver consistent performance. As a corollary to our new instrument development, we also report the use of an improved design approach using a machined aluminum cassette to meet the new instrument standards, prevent any light bleed across different trenches in each cassette, and allow testing of a larger number of samples for more targets in a single run. The GelCycler Mark II can detect and report E. coli contamination in 41 minutes. Sample positives are defined in as having a melt curve comparable to the internal positive control, with peak height exceeding that of the internal negative control. In a fractional analysis, as little as 1 bacterium per capillary reaction unit is directly detectable, with no enrichment step, in 35 cycles of PCR/MCA, in a total time of 53 minutes, making this instrument and technology among the very best for speed and sensitivity in screening food for pathogenic contamination. PMID:29746561

Comparison of snow melt properties across multiple spatial scales and landscape units in interior sub-Arctic boreal Alaskan watersheds

NASA Astrophysics Data System (ADS)

Bennett, K. E.; Cherry, J. E.; Hiemstra, C. A.; Bolton, W. R.

2013-12-01

Interior sub-Arctic Alaskan snow cover is rapidly changing and requires further study for correct parameterization in physically based models. This project undertook field studies during the 2013 snow melt season to capture snow depth, snow temperature profiles, and snow cover extent to compare with observations from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor at four different sites underlain by discontinuous permafrost. The 2013 melt season, which turned out to be the latest snow melt period on record, was monitored using manual field measurements (SWE, snow depth data collection), iButtons to record temperature of the snow pack, GoPro cameras to capture time lapse of the snow melt, and low level orthoimagery collected at ~1500 m using a Navion L17a plane mounted with a Nikon D3s camera. Sites were selected across a range of landscape conditions, including a north facing black spruce hill slope, a south facing birch forest, an open tundra site, and a high alpine meadow. Initial results from the adjacent north and south facing sites indicate a highly sensitive system where snow cover melts over just a few days, illustrating the importance of high resolution temporal data capture at these locations. Field observations, iButtons and GoPro cameras show that the MODIS data captures the melt conditions at the south and the north site with accuracy (2.5% and 6.5% snow cover fraction present on date of melt, respectively), but MODIS data for the north site is less variable around the melt period, owing to open conditions and sparse tree cover. However, due to the rapid melt rate trajectory, shifting the melt date estimate by a day results in a doubling of the snow cover fraction estimate observed by MODIS. This information can assist in approximating uncertainty associated with remote sensing data that is being used to populate hydrologic and snow models (the Sacramento Soil Moisture Accounting model, coupled with SNOW-17, and the Variable Infiltration Capacity hydrologic model) and provide greater understanding of error and resultant model sensitivities associated with regional observations of snow cover across the sub-Arctic boreal landscape.

High Resolution Melt analysis for mutation screening in PKD1 and PKD2

PubMed Central

2011-01-01

Background Autosomal dominant polycystic kidney disease (ADPKD) is the most common hereditary kidney disorder. It is characterized by focal development and progressive enlargement of renal cysts leading to end-stage renal disease. PKD1 and PKD2 have been implicated in ADPKD pathogenesis but genetic features and the size of PKD1 make genetic diagnosis tedious. Methods We aim to prove that high resolution melt analysis (HRM), a recent technique in molecular biology, can facilitate molecular diagnosis of ADPKD. We screened for mutations in PKD1 and PKD2 with HRM in 37 unrelated patients with ADPKD. Results We identified 440 sequence variants in the 37 patients. One hundred and thirty eight were different. We found 28 pathogenic mutations (25 in PKD1 and 3 in PKD2 ) within 28 different patients, which is a diagnosis rate of 75% consistent with literature mean direct sequencing diagnosis rate. We describe 52 new sequence variants in PKD1 and two in PKD2. Conclusion HRM analysis is a sensitive and specific method for molecular diagnosis of ADPKD. HRM analysis is also costless and time sparing. Thus, this method is efficient and might be used for mutation pre-screening in ADPKD genes. PMID:22008521

Detection of Babesia canis vogeli and Hepatozoon canis in canine blood by a single-tube real-time fluorescence resonance energy transfer polymerase chain reaction assay and melting curve analysis.

PubMed

Kongklieng, Amornmas; Intapan, Pewpan M; Boonmars, Thidarut; Thanchomnang, Tongjit; Janwan, Penchom; Sanpool, Oranuch; Lulitanond, Viraphong; Taweethavonsawat, Piyanan; Chungpivat, Sudchit; Maleewong, Wanchai

2015-03-01

A real-time fluorescence resonance energy transfer polymerase chain reaction (qFRET PCR) coupled with melting curve analysis was developed for detection of Babesia canis vogeli and Hepatozoon canis infections in canine blood samples in a single tube assay. The target of the assay was a region within the 18S ribosomal RNA gene amplified in either species by a single pair of primers. Following amplification from the DNA of infected dog blood, a fluorescence melting curve analysis was done. The 2 species, B. canis vogeli and H. canis, could be detected and differentiated in infected dog blood samples (n = 37) with high sensitivity (100%). The detection limit for B. canis vogeli was 15 copies of a positive control plasmid, and for H. canis, it was 150 copies of a positive control plasmid. The assay could simultaneously distinguish the DNA of both parasites from the DNA of controls. Blood samples from 5 noninfected dogs were negative, indicating high specificity. Several samples can be run at the same time. The assay can reduce misdiagnosis and the time associated with microscopic examination, and is not prone to the carryover contamination associated with the agarose gel electrophoresis step of conventional PCR. In addition, this qFRET PCR method would be useful to accurately determine the range of endemic areas or to discover those areas where the 2 parasites co-circulate. © 2015 The Author(s).

Universal digital high-resolution melt: a novel approach to broad-based profiling of heterogeneous biological samples.

PubMed

Fraley, Stephanie I; Hardick, Justin; Masek, Billie J; Jo Masek, Billie; Athamanolap, Pornpat; Rothman, Richard E; Gaydos, Charlotte A; Carroll, Karen C; Wakefield, Teresa; Wang, Tza-Huei; Yang, Samuel

2013-10-01

Comprehensive profiling of nucleic acids in genetically heterogeneous samples is important for clinical and basic research applications. Universal digital high-resolution melt (U-dHRM) is a new approach to broad-based PCR diagnostics and profiling technologies that can overcome issues of poor sensitivity due to contaminating nucleic acids and poor specificity due to primer or probe hybridization inaccuracies for single nucleotide variations. The U-dHRM approach uses broad-based primers or ligated adapter sequences to universally amplify all nucleic acid molecules in a heterogeneous sample, which have been partitioned, as in digital PCR. Extensive assay optimization enables direct sequence identification by algorithm-based matching of melt curve shape and Tm to a database of known sequence-specific melt curves. We show that single-molecule detection and single nucleotide sensitivity is possible. The feasibility and utility of U-dHRM is demonstrated through detection of bacteria associated with polymicrobial blood infection and microRNAs (miRNAs) associated with host response to infection. U-dHRM using broad-based 16S rRNA gene primers demonstrates universal single cell detection of bacterial pathogens, even in the presence of larger amounts of contaminating bacteria; U-dHRM using universally adapted Lethal-7 miRNAs in a heterogeneous mixture showcases the single copy sensitivity and single nucleotide specificity of this approach.

Regional Changes in Icescape Impact Shelf Circulation and Basal Melting

NASA Astrophysics Data System (ADS)

Cougnon, E. A.; Galton-Fenzi, B. K.; Rintoul, S. R.; Legrésy, B.; Williams, G. D.; Fraser, A. D.; Hunter, J. R.

2017-11-01

Ice shelf basal melt is the dominant contribution to mass loss from Antarctic ice shelves. However, the sensitivity of basal melt to changes in icescape (grounded icebergs, ice shelves, and sea ice) and related ocean circulation is poorly understood. Here we simulate the impact of the major 2010 calving event of the Mertz Glacier Tongue (MGT), East Antarctica, and related redistribution of sea ice and icebergs on the basal melt rate of the local ice shelves. We find that the position of the grounded tabular iceberg B9B controls the water masses that reach the nearby ice shelf cavities. After the calving of the MGT and the removal of B9B, warmer water is present both within the MGT cavity and on the continental shelf driving a 57% increase of the deep MGT basal melting. Major changes in icescape influence the oceanic heat flux responsible for basal ice shelf melting.

Atomistic simulation of solid-liquid coexistence for molecular systems: application to triazole and benzene.

PubMed

Eike, David M; Maginn, Edward J

2006-04-28

A method recently developed to rigorously determine solid-liquid equilibrium using a free-energy-based analysis has been extended to analyze multiatom molecular systems. This method is based on using a pseudosupercritical transformation path to reversibly transform between solid and liquid phases. Integration along this path yields the free energy difference at a single state point, which can then be used to determine the free energy difference as a function of temperature and therefore locate the coexistence temperature at a fixed pressure. The primary extension reported here is the introduction of an external potential field capable of inducing center of mass order along with secondary orientational order for molecules. The method is used to calculate the melting point of 1-H-1,2,4-triazole and benzene. Despite the fact that the triazole model gives accurate bulk densities for the liquid and crystal phases, it is found to do a poor job of reproducing the experimental crystal structure and heat of fusion. Consequently, it yields a melting point that is 100 K lower than the experimental value. On the other hand, the benzene model has been parametrized extensively to match a wide range of properties and yields a melting point that is only 20 K lower than the experimental value. Previous work in which a simple "direct heating" method was used actually found that the melting point of the benzene model was 50 K higher than the experimental value. This demonstrates the importance of using proper free energy methods to compute phase behavior. It also shows that the melting point is a very sensitive measure of force field quality that should be considered in parametrization efforts. The method described here provides a relatively simple approach for computing melting points of molecular systems.

Are ``Hot Spots'' Hot? - An Overview

NASA Astrophysics Data System (ADS)

Foulger, G. R.

2010-12-01

The term “hot spot” is taken variously to imply a) the presence of excessive volcanism, or b) that the melt formed in an unusually hot source. Case b) is intrinsic to the plume hypothesis. Temperature anomalies of 200-300 degrees Celsius are expected, though there is widespread downward-revision of this where observations do not support it. It is not self-evident that “hot spots” are hot in the sense of case b), despite the fact that this is widely assumed. Furthermore, a hot source is not strongly supported by observations, and is at odds with many data. The temperature of the mantle has been studied using many different methods. Global oceanic heat flow values were recently assessed, but reveal no evidence for elevated temperatures around proposed plume localities. Mapping surface heat flow is only sensitive to anomalies at the level of 100 degrees Celsius, however. Seismological methods include correlating velocity with crustal thickness at LIPs, measuring transition zone thickness, and mapping velocity, e.g., using tomography. The first of these does not find evidence for elevated temperatures. The latter two are both sensitive to the presence of partial melt and variations in rock composition, in addition to temperature, which is the weakest potential effect. They thus cannot be used as thermometers. In particular, it cannot be assumed that red = hot and blue = cold in tomographic cross sections. Petrological and geochemical approaches include the “global systematics”. This has now been shown to not work for estimating temperature and its application should be discontinued. Mineralogical phase relationships are applied by comparing data from laboratory melting experiments to observations. Olivine control-line analysis has been extensively used in attempts to measure the differences in melt-formation temperature between mid-ocean ridges and melting anomalies. Difficulties arise in choosing the correct olivine geothermometer and because picrite glass is lacking from any melting anomaly except Hawaii. The results must be compared with a measure of the temperature of “normal mantle”. This is usually taken to be the temperature of melt formation beneath mid-ocean ridges, but the correct choice is controversial. Furthermore, this cannot be assumed to represent the potential temperature of the mantle in general. The surface conduction layer may extend much deeper than the depth of extraction of MORB, so melt extracted from greater depths, e.g., from beneath the base of the lithosphere in old parts of the ocean basins, may form at higher temperatures. It is easier to assume that the mantle beneath “hot spots” is hot than it is to show unequivocally that it is true. This endeavor is perhaps the most direct way of testing the plume hypothesis, but it is also one of the most challenging.

Properties of pressure sensitive adhesives found in paper recycling operations

Treesearch

Ryan F. Verhulst; Steven J. Severtson; Jihui Guo; Carl J. Houtman

2006-01-01

Hot melt and water-based adhesives are very different materials with similar physical properties. Their ability to act as adhesives is due to physical bonds and mechanical interlocks which form as adhesive flows into topographical features on the substrate surface. Hot-melt adhesives are based on soft, rubbery polymers while water-based adhesives are usually acrylic...

Changing surface-atmosphere energy exchange and refreezing capacity of the lower accumulation area, West Greenland

NASA Astrophysics Data System (ADS)

Charalampidis, C.; van As, D.; Box, J. E.; van den Broeke, M. R.; Colgan, W. T.; Doyle, S. H.; Hubbard, A. L.; MacFerrin, M.; Machguth, H.; Smeets, C. J. P. P.

2015-11-01

We present 5 years (2009-2013) of automatic weather station measurements from the lower accumulation area (1840 m a.s.l. - above sea level) of the Greenland ice sheet in the Kangerlussuaq region. Here, the summers of 2010 and 2012 were both exceptionally warm, but only 2012 resulted in a strongly negative surface mass budget (SMB) and surface meltwater run-off. The observed run-off was due to a large ice fraction in the upper 10 m of firn that prevented meltwater from percolating to available pore volume below. Analysis reveals an anomalously low 2012 summer-averaged albedo of 0.71 (typically ~ 0.78), as meltwater was present at the ice sheet surface. Consequently, during the 2012 melt season, the ice sheet surface absorbed 28 % (213 MJ m-2) more solar radiation than the average of all other years. A surface energy balance model is used to evaluate the seasonal and interannual variability of all surface energy fluxes. The model reproduces the observed melt rates as well as the SMB for each season. A sensitivity analysis reveals that 71 % of the additional solar radiation in 2012 was used for melt, corresponding to 36 % (0.64 m) of the 2012 surface lowering. The remaining 64 % (1.14 m) of surface lowering resulted from high atmospheric temperatures, up to a +2.6 °C daily average, indicating that 2012 would have been a negative SMB year at this site even without the melt-albedo feedback. Longer time series of SMB, regional temperature, and remotely sensed albedo (MODIS) show that 2012 was the first strongly negative SMB year, with the lowest albedo, at this elevation on record. The warm conditions of recent years have resulted in enhanced melt and reduction of the refreezing capacity in the lower accumulation area. If high temperatures continue, the current lower accumulation area will turn into a region with superimposed ice in coming years.

Magnetite Crisis in Miniature: Vanadium, Sulfur, and Iron Valence State Measurements in Melt Inclusions from Nyamuragira Volcano (D.R. Congo, Africa)

NASA Astrophysics Data System (ADS)

Head, E.; Lanzirotti, A.; Sutton, S.; Newville, M.

2017-12-01

Sulfur (S), vanadium (V), and iron (Fe) K-edge micro-X-ray absorption near edge structure (micro-XANES) spectroscopy of melt inclusions (MI) from Nyamuragira volcano (D.R. Congo, Africa) shows that diffusive loss of H from olivine-hosted melt inclusions may lead to crystallization of submicron magnetite and sulfide crystallites that are imperceptible petrographically or via electron microscopy. Micro-XANES was used to constrain the evolution of oxygen fugacity (fO2) and sulfur speciation for MI preserved in Nyamuragira tephra (1986 and 2006) and lava (1938 and 1948). The S, V, and Fe valence state oxybarometry for 1938, 1948, and 2006 MI are all consistent with equilibration at FMQ-1, and sulfur in MI from these three eruptions are sulfide-dominated (< 9% sulfate). However, Fe and V micro-XANES data for 1986 MI appear to be more reduced by 1-2 log units, while S micro-XANES data indicate more variable sulfate content. The 1986 results are best explained by diffusive loss of H from the entrapped melt. Submicron magnetite forms as Fe oxidizes in the melt in response to the loss of H, and V strongly partitions into these magnetite nanolites due to its compatibility. The nanolites are consistently analyzed within the beam volume and, thus, the measured V XANES appears more ordered. Magnetite crystallization from the melt also triggers precipitation of crystalline FeS phases within the inclusion, leading to a more ordered S XANES spectra as well. This may suggest a different magma storage history for the 1986 eruption compared to the others. Results demonstrate that coupled S, V, and Fe micro-XANES analysis of alkalic MI can provide accurate measures of the fO2 of entrapped melts, and that S and V micro-XANES spectroscopy are potentially highly sensitive tools for identifying diffusive water loss in olivine-hosted MIs.

Comment on "Sensitivity of seafloor bathymetry to climate-driven fluctuations in mid-ocean ridge magma supply".

PubMed

Huybers, Peter; Langmuir, Charles; Katz, Richard F; Ferguson, David; Proistosescu, Cristian; Carbotte, Suzanne

2016-06-17

Olive et al (Reports, 16 October 2015, p. 310) argue that ~10% fluctuations in melt supply do not produce appreciable changes in ocean ridge bathymetry on time scales less than 100,000 years and thus cannot reflect sea level forcing. Spectral analysis of bathymetry in a region they highlight as being fault controlled, however, shows strong evidence for a signal from sea level variation. Copyright © 2016, American Association for the Advancement of Science.

Limited copy number - high resolution melting (LCN-HRM) enables the detection and identification by sequencing of low level mutations in cancer biopsies

PubMed Central

Do, Hongdo; Dobrovic, Alexander

2009-01-01

Background Mutation detection in clinical tumour samples is challenging when the proportion of tumour cells, and thus mutant alleles, is low. The limited sensitivity of conventional sequencing necessitates the adoption of more sensitive approaches. High resolution melting (HRM) is more sensitive than sequencing but identification of the mutation is desirable, particularly when it is important to discriminate false positives due to PCR errors or template degradation from true mutations. We thus developed limited copy number - high resolution melting (LCN-HRM) which applies limiting dilution to HRM. Multiple replicate reactions with a limited number of target sequences per reaction allow low level mutations to be detected. The dilutions used (based on Ct values) are chosen such that mutations, if present, can be detected by the direct sequencing of amplicons with aberrant melting patterns. Results Using cell lines heterozygous for mutations, we found that the mutations were not readily detected when they comprised 10% of total alleles (20% tumour cells) by sequencing, whereas they were readily detectable at 5% total alleles by standard HRM. LCN-HRM allowed these mutations to be identified by direct sequencing of those positive reactions. LCN-HRM was then used to review formalin-fixed paraffin-embedded (FFPE) clinical samples showing discordant findings between sequencing and HRM for KRAS exon 2 and EGFR exons 19 and 21. Both true mutations present at low levels and sequence changes due to artefacts were detected by LCN-HRM. The use of high fidelity polymerases showed that the majority of the artefacts were derived from the damaged template rather than replication errors during amplification. Conclusion LCN-HRM bridges the sensitivity gap between HRM and sequencing and is effective in distinguishing between artefacts and true mutations. PMID:19811662

Limited copy number-high resolution melting (LCN-HRM) enables the detection and identification by sequencing of low level mutations in cancer biopsies.

PubMed

Do, Hongdo; Dobrovic, Alexander

2009-10-08

Mutation detection in clinical tumour samples is challenging when the proportion of tumour cells, and thus mutant alleles, is low. The limited sensitivity of conventional sequencing necessitates the adoption of more sensitive approaches. High resolution melting (HRM) is more sensitive than sequencing but identification of the mutation is desirable, particularly when it is important to discriminate false positives due to PCR errors or template degradation from true mutations.We thus developed limited copy number - high resolution melting (LCN-HRM) which applies limiting dilution to HRM. Multiple replicate reactions with a limited number of target sequences per reaction allow low level mutations to be detected. The dilutions used (based on Ct values) are chosen such that mutations, if present, can be detected by the direct sequencing of amplicons with aberrant melting patterns. Using cell lines heterozygous for mutations, we found that the mutations were not readily detected when they comprised 10% of total alleles (20% tumour cells) by sequencing, whereas they were readily detectable at 5% total alleles by standard HRM. LCN-HRM allowed these mutations to be identified by direct sequencing of those positive reactions.LCN-HRM was then used to review formalin-fixed paraffin-embedded (FFPE) clinical samples showing discordant findings between sequencing and HRM for KRAS exon 2 and EGFR exons 19 and 21. Both true mutations present at low levels and sequence changes due to artefacts were detected by LCN-HRM. The use of high fidelity polymerases showed that the majority of the artefacts were derived from the damaged template rather than replication errors during amplification. LCN-HRM bridges the sensitivity gap between HRM and sequencing and is effective in distinguishing between artefacts and true mutations.

The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology

PubMed Central

Gardner, Eugene J.; Lam, Vincent K.; Harris, Daniel N.; Chuang, Nelson T.; Scott, Emma C.; Pittard, W. Stephen; Mills, Ryan E.; Devine, Scott E.

2017-01-01

Mobile element insertions (MEIs) represent ∼25% of all structural variants in human genomes. Moreover, when they disrupt genes, MEIs can influence human traits and diseases. Therefore, MEIs should be fully discovered along with other forms of genetic variation in whole genome sequencing (WGS) projects involving population genetics, human diseases, and clinical genomics. Here, we describe the Mobile Element Locator Tool (MELT), which was developed as part of the 1000 Genomes Project to perform MEI discovery on a population scale. Using both Illumina WGS data and simulations, we demonstrate that MELT outperforms existing MEI discovery tools in terms of speed, scalability, specificity, and sensitivity, while also detecting a broader spectrum of MEI-associated features. Several run modes were developed to perform MEI discovery on local and cloud systems. In addition to using MELT to discover MEIs in modern humans as part of the 1000 Genomes Project, we also used it to discover MEIs in chimpanzees and ancient (Neanderthal and Denisovan) hominids. We detected diverse patterns of MEI stratification across these populations that likely were caused by (1) diverse rates of MEI production from source elements, (2) diverse patterns of MEI inheritance, and (3) the introgression of ancient MEIs into modern human genomes. Overall, our study provides the most comprehensive map of MEIs to date spanning chimpanzees, ancient hominids, and modern humans and reveals new aspects of MEI biology in these lineages. We also demonstrate that MELT is a robust platform for MEI discovery and analysis in a variety of experimental settings. PMID:28855259

Environmental controls of marine productivity hot spots around Antarctica

NASA Astrophysics Data System (ADS)

Arrigo, Kevin R.; van Dijken, Gert L.; Strong, Aaron L.

2015-08-01

Antarctic coastal polynyas are biologically rich ecosystems that support large populations of mammals and birds and are globally significant sinks of atmospheric carbon dioxide. To support local phytoplankton blooms, these highly productive ecosystems require a large input of iron (Fe), the sources of which are poorly known. Here we assess the relative importance of six different environmental factors in controlling the amount of phytoplankton biomass and rates of net primary production (NPP) in 46 coastal polynyas around Antarctica. Data presented here suggest that melting ice shelves are a primary supplier of Fe to coastal polynyas, with basal melt rates explaining 59% of the between-polynya variance in mean chlorophyll a (Chl a) concentration. In a multiple regression analysis, which explained 78% of the variance in chlorophyll a (Chl a) between polynyas, basal melt rate explained twice as much of the variance as the next most important variable. Fe upwelled from sediments, which is partly controlled by continental shelf width, was also important in some polynyas. Of secondary importance to phytoplankton abundance and NPP were sea surface temperature and polynya size. Surprisingly, differences in light availability and the length of the open water season explained little or none of the variance in either Chl a or NPP between polynyas. If the productivity of coastal polynyas is indeed sensitive to the release of Fe from melting ice shelves, future changes in ice shelf melt rates could dramatically influence Antarctic coastal ecosystems and the ability of continental shelf waters to sequester atmospheric carbon dioxide. This article was corrected on 26 AUG 2015. See the end of the full text for details.

Investigation of internal structure of fine granules by microtomography using synchrotron X-ray radiation.

PubMed

Noguchi, Shuji; Kajihara, Ryusuke; Iwao, Yasunori; Fujinami, Yukari; Suzuki, Yoshio; Terada, Yasuko; Uesugi, Kentaro; Miura, Keiko; Itai, Shigeru

2013-03-10

Computed tomography (CT) using synchrotron X-ray radiation was evaluated as a non-destructive structural analysis method for fine granules. Two kinds of granules have been investigated: a bromhexine hydrochloride (BHX)-layered Celphere CP-102 granule coated with pH-sensitive polymer Kollicoat Smartseal 30-D, and a wax-matrix granule constructed from acetaminophen (APAP), dibasic calcium phosphate dehydrate, and aminoalkyl methacrylate copolymer E (AMCE) manufactured by melt granulation. The diameters of both granules were 200-300 μm. CT analysis of CP-102 granule could visualize the laminar structures of BHX and Kollicoat layers, and also visualize the high talc-content regions in the Kollicoat layer that could not be detected by scanning electron microscopy. Moreover, CT analysis using X-ray energies above the absorption edge of Br specifically enhanced the contrast in the BHX layer. As for granules manufactured by melt granulation, CT analysis revealed that they had a small inner void space due to a uniform distribution of APAP and other excipients. The distribution of AMCE revealed by CT analysis was also found to involve in the differences of drug dissolution from the granules as described previously. These observations demonstrate that CT analysis using synchrotron X-ray radiation is a powerful method for the detailed internal structure analysis of fine granules. Copyright © 2013 Elsevier B.V. All rights reserved.

Direct Detection of Rifampin and Isoniazid Resistance in Sputum Samples from Tuberculosis Patients by High-Resolution Melt Curve Analysis

PubMed Central

Anthwal, Divya; Gupta, Rakesh Kumar; Bhalla, Manpreet; Bhatnagar, Shinjini

2017-01-01

ABSTRACT Drug-resistant tuberculosis (TB) is a major threat to TB control worldwide. Globally, only 40% of the 340,000 notified TB patients estimated to have multidrug-resistant-TB (MDR-TB) were detected in 2015. This study was carried out to evaluate the utility of high-resolution melt curve analysis (HRM) for the rapid and direct detection of MDR-TB in Mycobacterium tuberculosis in sputum samples. A reference plasmid library was first generated of the most frequently observed mutations in the resistance-determining regions of rpoB, katG, and an inhA promoter and used as positive controls in HRM. The assay was first validated in 25 MDR M. tuberculosis clinical isolates. The assay was evaluated on DNA isolated from 99 M. tuberculosis culture-positive sputum samples that included 84 smear-negative sputum samples, using DNA sequencing as gold standard. Mutants were discriminated from the wild type by comparing melting-curve patterns with those of control plasmids using HRM software. Rifampin (RIF) and isoniazid (INH) monoresistance were detected in 11 and 21 specimens, respectively, by HRM. Six samples were classified as MDR-TB by sequencing, one of which was missed by HRM. The HRM-RIF, INH-katG, and INH-inhA assays had 89% (95% confidence interval [CI], 52, 100%), 85% (95% CI, 62, 97%), and 100% (95% CI, 74, 100%) sensitivity, respectively, in smear-negative samples, while all assays had 100% sensitivity in smear-positive samples. All assays had 100% specificity. Concordance of 97% to 100% (κ value, 0.9 to 1) was noted between sequencing and HRM. Heteroresistance was observed in 5 of 99 samples by sequencing. In conclusion, the HRM assay was a cost-effective (Indian rupee [INR]400/US$6), rapid, and closed-tube method for the direct detection of MDR-TB in sputum, especially for direct smear-negative cases. PMID:28330890

The utilization of drug-polymer interactions for improving the chemical stability of hot-melt extruded solid dispersions.

PubMed

Guo, Zhefei; Lu, Ming; Li, Yongcheng; Pang, Huishi; Lin, Ling; Liu, Xu; Wu, Chuanbin

2014-02-01

Interactions between drugs and polymers were utilized to lower the processing temperature of hot-melt extrusion (HME), and thus minimize the thermal degradation of heat-sensitive drugs during preparation of amorphous solid dispersions. Diflunisal (DIF), which would degrade upon melting, was selected as a model drug. Hydrogen bonds between DIF and polymeric carriers (PVP K30, PVP VA64, hydroxypropyl methylcellulose and Soluplus) were revealed by differential scanning calorimetry and Fourier transform infrared spectroscopy. The hot-melt extruded solid dispersion was characterized by powder X-ray diffraction (XRD), scanning electron microscopy (SEM) and high-performance liquid chromatography (HPLC). The results of hot-stage polar microscopy indicated that DIF was dissolved in molten polymers at 160°C, much lower than the melting point of DIF (215°C). At this temperature, amorphous solid dispersions were successfully produced by HME, as confirmed by XRD and SEM. The related impurities in amorphous solid dispersions detected by HPLC were lower than 0.3%, indicating that thermal degradation was effectively minimized. The dissolution of DIF from amorphous solid dispersions was significantly enhanced as compared with the pure crystalline drug. This technique based on drug-polymer interactions to prepare chemically stable amorphous solid dispersions by HME provides an attractive opportunity for development of heat-sensitive drugs. © 2013 Royal Pharmaceutical Society.

Impact of fixation artifacts and threshold selection on high resolution melting analysis for KRAS mutation screening.

PubMed

Pérez-Báez, Wendy; García-Latorre, Ethel A; Maldonado-Martínez, Héctor Aquiles; Coronado-Martínez, Iris; Flores-García, Leonardo; Taja-Chayeb, Lucía

2017-10-01

Treatment in metastatic colorectal cancer (mCRC) has expanded with monoclonal antibodies targeting epidermal growth factor receptor, but is restricted to patients with a wild-type (WT) KRAS mutational status. The most sensitive assays for KRAS mutation detection in formalin-fixed paraffin embedded (FFPE) tissues are based on real-time PCR. Among them, high resolution melting analysis (HRMA), is a simple, fast, highly sensitive, specific and cost-effective method, proposed as adjunct for KRAS mutation detection. However the method to categorize WT vs mutant sequences in HRMA is not clearly specified in available studies, besides the impact of FFPE artifacts on HRMA performance hasn't been addressed either. Avowedly adequate samples from 104 consecutive mCRC patients were tested for KRAS mutations by Therascreen™ (FDA Validated test), HRMA, and HRMA with UDG pre-treatment to reverse FFPE fixation artifacts. Comparisons of KRAS status allocation among the three methods were done. Focusing on HRMA as screening test, ROC curve analyses were performed for HRMA and HMRA-UDG against Therascreen™, in order to evaluate their discriminative power and to determine the threshold of profile concordance between WT control and sample for KRAS status determination. Comparing HRMA and HRMA-UDG against Therascreen™ as surrogate gold standard, sensitivity was 1 for both HRMA and HRMA-UDG; and specificity and positive predictive values were respectively 0.838 and 0.939; and 0.777 and 0.913. As evaluated by the McNemar test, HRMA-UDG allocated samples to a WT/mutated genotype in a significatively different way from HRMA (p > 0.001). On the other hand HRMA-UDG did not differ from Therascreen™ (p = 0.125). ROC-curve analysis showed a significant discriminative power for both HRMA and HRMA-UDG against Therascreen™ (respectively, AUC of 0.978, p > 0.0001, CI 95% 0.957-0.999; and AUC of 0.98, p > 0.0001, CI 95% 0.000-1.0). For HRMA as a screening tool, the best threshold (degree of concordance between sample curves and WT control) was attained at 92.14% for HRMA (specificity of 0.887), and at 92.55% for HRMA-UDG (specificity of 0.952). HRMA is a highly sensitive method for KRAS mutation detection, with apparently adequate and statistically significant discriminative power. FFPE sample fixation artifacts have an impact on HRMA results, so for HRMA on FFPE samples pre-treatment with UDG should be strongly suggested. The choice of the threshold for melting curve concordance has also great impact on HRMA performance. A threshold of 93% or greater might be adequate if using HRMA as a screening tool. Further validation of this threshold is required. Copyright © 2017 Elsevier Ltd. All rights reserved.

Responses of Basal Melting of Antarctic Ice Shelves to the Climatic Forcing of the Last Glacial Maximum and CO2 Doubling

NASA Astrophysics Data System (ADS)

Abe-Ouchi, A.; Obase, T.

2017-12-01

Basal melting of the Antarctic ice shelves is an important factor in determining the stability of the Antarctic ice sheet. This study used the climatic outputs of an atmosphere?ocean general circulation model to force a circumpolar ocean model that resolves ice shelf cavity circulation to investigate the response of Antarctic ice shelf melting to different climatic conditions, i.e., to an increase (doubling) of CO2 and the Last Glacial Maximum conditions. We also conducted sensitivity experiments to investigate the role of surface atmospheric change, which strongly affects sea ice production, and the change of oceanic lateral boundary conditions. We found that the rate of change of basal melt due to climate warming is much greater (by an order of magnitude) than due to cooling. This is mainly because the intrusion of warm water onto the continental shelves, linked to sea ice production and climate change, is crucial in determining the basal melt rate of many ice shelves. Sensitivity experiments showed that changes of atmospheric heat flux and ocean temperature are both important for warm and cold climates. The offshore wind change together with atmospheric heat flux change strongly affected the production of sea ice and high-density water, preventing warmer water approaching the ice shelves under a colder climate. These results reflect the importance of both water mass formation in the Antarctic shelf seas and subsurface ocean temperature in understanding the long-term response to climate change of the melting of Antarctic ice shelves.

Improving the chemical stability of amorphous solid dispersion with cocrystal technique by hot melt extrusion.

PubMed

Liu, Xu; Lu, Ming; Guo, Zhefei; Huang, Lin; Feng, Xin; Wu, Chuanbin

2012-03-01

To explore in-situ forming cocrystal as a single-step, efficient method to significantly depress the processing temperature and thus minimize the thermal degradation of heat-sensitive drug in preparation of solid dispersions by melting method (MM) and hot melt extrusion (HME). Carbamazepine (CBZ)-nicotinamide (NIC) cocrystal solid dispersions were prepared with polymer carriers PVP/VA, SOLUPLUS and HPMC by MM and/or HME. The formation of cocrystal was investigated by differential scanning calorimetry and hot stage polarized optical microscopy. State of CBZ in solid dispersion was characterized by X-ray powder diffraction and optical microscopy. Interactions between CBZ, NIC and polymers were investigated by FTIR. Dissolution behaviors of solid dispersions were compared with that of pure CBZ. CBZ-NIC cocrystal with melting point of 160°C was formed in polymer carriers during heating process, and the preparation temperature of amorphous CBZ solid dispersion was therefore depressed to 160°C. The dissolution rate of CBZ-NIC cocrystal solid dispersion was significantly increased. By in-situ forming cocrystal, chemically stable amorphous solid dispersions were prepared by MM and HME at a depressed processing temperature. This method provides an attractive opportunity for HME of heat-sensitive drugs.

Rapid detection of α-thalassaemia alleles of --(SEA)/, -α(3.7)/ and -α(4.2)/ using a dual labelling, self-quenching hybridization probe/melting curve analysis.

PubMed

Gao, Lan; Liu, Yanhui; Sun, Manna; Zhao, Ying; Xie, Rungui; He, Yi; Xu, Wanfang; Liu, Jianxin; Lin, Yangyang; Lou, Jiwu

2015-12-01

The aim of the study was to set up an alternative automatic molecular diagnostic method for deletional α-thalassaemia mutations without gel electrophoresis. Based on the sequence variation within the two Z boxes and melting curve analysis of dually labelled probes, a real-time PCR assay was developed and validated for the rapid detection of major α-genotypes (--(SEA)/αα, --(SEA)/-α(3.7), --(SEA)/-α(4.2), --(SEA)/--(SEA), -α(3.7)/-α(3.7) and -α(4.2)/-α(4.2)). Samples with the -α(3.7)/-α(3.7), -α(4.2)/-α(4.2), --(SEA)/αα, --(SEA)/-α(3.7), --(SEA)/-α(4.2), and --(SEA)/--(SEA) genotypes could be clearly distinguished. The accuracy of this technique for these samples was 100% sensitivity and specificity. This technique is rapid and reliable, demonstrating feasibility for use in large-scale population screening and prenatal diagnosis of deletional Hb H disease and Hb Bart's hydrops fetalis. Copyright © 2015 Elsevier Ltd. All rights reserved.

Growth Twinning and Generation of High-Frequency Surface Nanostructures in Ultrafast Laser-Induced Transient Melting and Resolidification.

PubMed

Sedao, Xxx; Shugaev, Maxim V; Wu, Chengping; Douillard, Thierry; Esnouf, Claude; Maurice, Claire; Reynaud, Stéphanie; Pigeon, Florent; Garrelie, Florence; Zhigilei, Leonid V; Colombier, Jean-Philippe

2016-07-26

The structural changes generated in surface regions of single crystal Ni targets by femtosecond laser irradiation are investigated experimentally and computationally for laser fluences that, in the multipulse irradiation regime, produce sub-100 nm high spatial frequency surface structures. Detailed experimental characterization of the irradiated targets combining electron back scattered diffraction analysis with high-resolution transmission electron microscopy reveals the presence of multiple nanoscale twinned domains in the irradiated surface regions of single crystal targets with (111) surface orientation. Atomistic- and continuum-level simulations performed for experimental irradiation conditions reproduce the generation of twinned domains and establish the conditions leading to the formation of growth twin boundaries in the course of the fast transient melting and epitaxial regrowth of the surface regions of the irradiated targets. The observation of growth twins in the irradiated Ni(111) targets provides strong evidence of the role of surface melting and resolidification in the formation of high spatial frequency surface structures. This also suggests that the formation of twinned domains can be used as a sensitive measure of the levels of liquid undercooling achieved in short pulse laser processing of metals.

Rapid detection of Opisthorchis viverrini and Strongyloides stercoralis in human fecal samples using a duplex real-time PCR and melting curve analysis.

PubMed

Janwan, Penchom; Intapan, Pewpan M; Thanchomnang, Tongjit; Lulitanond, Viraphong; Anamnart, Witthaya; Maleewong, Wanchai

2011-12-01

Human opisthorchiasis caused by the liver fluke Opisthorchis viverrini is an endemic disease in Southeast Asian countries including the Lao People's Democratic Republic, Cambodia, Vietnam, and Thailand. Infection with the soil-transmitted roundworm Strongyloides stercoralis is an important problem worldwide. In some areas, both parasitic infections are reported as co-infections. A duplex real-time fluorescence resonance energy transfer (FRET) PCR merged with melting curve analysis was developed for the rapid detection of O. viverrini and S. stercoralis in human fecal samples. Duplex real-time FRET PCR is based on fluorescence melting curve analysis of a hybrid of amplicons generated from two genera of DNA elements: the 162 bp pOV-A6 DNA sequence specific to O. viverrini and the 244 bp 18S rRNA sequence specific to S. stercoralis, and two pairs of specific fluorophore-labeled probes. Both O. viverrini and S. stercoralis can be differentially detected in infected human fecal samples by this process through their different fluorescence channels and melting temperatures. Detection limit of the method was as little as two O. viverrini eggs and four S. stercoralis larvae in 100 mg of fecal sample. The assay could distinguish the DNA of both parasites from the DNA of negative fecal samples and fecal samples with other parasite materials, as well as from the DNA of human leukocytes and other control parasites. The technique showed 100% sensitivity and specificity. The introduced duplex real-time FRET PCR can reduce labor time and reagent costs and is not prone to carry over contamination. The method is important for simultaneous detection especially in areas where both parasites overlap incidence and is useful as the screening tool in the returning travelers and immigrants to industrialized countries where number of samples in the diagnostic units will become increasing.

Crystallographic effects during radiative melting of semitransparent materials

NASA Astrophysics Data System (ADS)

Webb, B. W.; Viskanta, R.

1987-10-01

Experiments have been performed to illustrate crystallogrpahic effects during radiative melting of unconfined vertical layers of semitransparent material. Radiative melting of a polycrystalline paraffin was performed and the instantaneous layer weight and transmittance were measured using a cantilever beam technique and thermopile radiation detector, respectively. The effects of radiative flux, initial solid subcooling, spectral distribution of the irradiation, and crystal structure of the solid as determined qualitatively by the sample solidification rate were studied. Experimental results show conclusively the dominant influence of cystallographic effects in the form of multiple internal scattering of radiation during the melting process. A theoretical model is formulated to predict the melting rate of the material. Radiation transfer is treated by solving the one-dimensional radiative transfer equation for an absorbing-scattering medium using the discrete ordinates method. Melting rate and global layer reflectance as predicted by the model agree well with experimental data. Parametric studies conducted with the model illustrate the sensitivity of the melting behavior to such variables as incident radiative flux, initial layer opacity (material extinction coefficient), and scattering asymmetry factor.

Constraints on radial anisotropy in the central Pacific upper mantle from the NoMelt OBS array

NASA Astrophysics Data System (ADS)

Russell, J. B.; Gaherty, J. B.; Lin, P. P.; Zebker, M.

2016-12-01

Observations of seismic anisotropy in ocean basins are important for constraining deformation and melting processes in the upper mantle. The NoMelt OBS array was deployed on relatively pristine, 70-Ma seafloor in the central Pacific with the aim of constraining upper-mantle circulation and the evolution of the lithosphere-asthenosphere system. Azimuthal variations in Rayleigh-wave velocity suggest strong anisotropic fabric both in the lithosphere and deep in the asthenosphere, and we aim to evaluate whether radial anisotropy shows a similar pattern. We use a combination of Love waves from earthquakes (20-100 s) as well as high-frequency ambient noise (5-10 s) to estimate VSH in the upper 300 km beneath the NoMelt array. Waveform fitting of the ambient-noise cross spectra provide phase-velocity estimates that are sensitive to the upper 50 km of the mantle. To constrain structure beneath the lid, we employ an array-based approach to measure Love-wave phase velocities across the array using seven shallow-focus events (< 25 km) with high signal-to-noise ratio and diverse azimuthal coverage. The Love wave phase-velocity measurements suggest strong interference of the first overtone for intermediate periods (20-50 s), while longer periods (>60 s) are mostly dominated by fundamental mode energy. Through forward modeling of Love wave Fréchet kernels, we find an extremely strong nonlinearity in individual mode-branch sensitivity that is dependent on the relative velocity difference between the low-velocity zone (LVZ) and the overlying Pacific lid. For the fundamental mode in the presence of a strong LVZ, intermediate periods (20-50 s) have little sensitivity within the lithospheric mantle with peak sensitivity pushed to the base of the low-velocity zone. This peak sensitivity migrates to much shallower depth as the lid/LVZ contrast is reduced. Therefore, we use a Monte Carlo approach to systematically explore the model space and identify the most robust model features required to minimize phase-velocity misfit of the full multimode Love wave arrivals. The resulting VSH model is combined with the NoMelt VSV model to obtain estimates of radial anisotropy for the top 300km of the central Pacific upper-mantle.

Thermodynamic controls on element partitioning between titanomagnetite and andesitic-dacitic silicate melts

NASA Astrophysics Data System (ADS)

Sievwright, R. H.; Wilkinson, J. J.; O'Neill, H. St. C.; Berry, A. J.

2017-08-01

Titanomagnetite-melt partitioning of Mg, Mn, Al, Ti, Sc, V, Co, Ni, Cu, Zn, Ga, Zr, Nb, Mo, Hf and Ta was investigated experimentally as a function of oxygen fugacity ( fO2) and temperature ( T) in an andesitic-dacitic bulk-chemical compositional range. In these bulk systems, at constant T, there are strong increases in the titanomagnetite-melt partitioning of the divalent cations (Mg2+, Mn2+, Co2+, Ni2+, Zn2+) and Cu2+/Cu+ with increasing fO2 between 0.2 and 3.7 log units above the fayalite-magnetite-quartz buffer. This is attributed to a coupling between magnetite crystallisation and melt composition. Although melt structure has been invoked to explain the patterns of mineral-melt partitioning of divalent cations, a more rigorous justification of magnetite-melt partitioning can be derived from thermodynamic principles, which accounts for much of the supposed influence ascribed to melt structure. The presence of magnetite-rich spinel in equilibrium with melt over a range of fO2 implies a reciprocal relationship between a(Fe2+O) and a(Fe3+O1.5) in the melt. We show that this relationship accounts for the observed dependence of titanomagnetite-melt partitioning of divalent cations with fO2 in magnetite-rich spinel. As a result of this, titanomagnetite-melt partitioning of divalent cations is indirectly sensitive to changes in fO2 in silicic, but less so in mafic bulk systems.

An in-vitro-in-vivo taste assessment of bitter drug: comparative electronic tongues study.

PubMed

Maniruzzaman, Mohammed; Douroumis, Dennis

2015-01-01

The efficiency of the Astree e-tongue and Taste Sensing system TS5000Z for the evaluation of the taste masking effect of hot melt extruded formulations was investigated in this study. Hot melt extrusion (HME) processing was optimized using Randcastle single screw extruder (USA) to manufacture extrudates with desirable characteristics. Cationic model drug propranolol HCl (PRP) was processed with the anionic polymers - Eudragit L100 (L100) and Eudragit L100-55 (Acryl-EZE). Solid state of the drug in polymer matrices was evaluated by scanning electron microscopy (SEM), differential scanning calorimetry, particle size analysis, Fourier transform infrared (FTIR) and Nuclear magnetic resonance (NMR) analysis. In-vitro taste masking efficiency of the two polymers was performed by using two different e-tongues (Astree e-tongue and TS5000Z). The results obtained from both e-tongues were further compared and contrast to find out the sensor outputs in all formulations. Solid state analysis of the extruded formulations revealed the presence of amorphous PRP. Both e-tongues were able to detect the taste masking variations of the extrudates and were in good agreement with the in-vivo results obtained from a panel of six healthy human volunteers (R(2)  > 0.84). However, each e-tongue sensor demonstrated different sensitivity, suggesting a careful consideration of the experimental findings during melt extrusion, is necessary for the development of taste-masked formulations. Furthermore, FTIR spectroscopy and NMR studies revealed possible drug polymer intermolecular interactions as the mechanism of successful taste masking. HME can effectively be used to manufacture taste-masked extruded formulations, while both e-tongues demonstrated satisfactory taste analysis for the development of taste-masked formulations. © 2014 Royal Pharmaceutical Society.

Satellite-derived pan-Arctic melt onset dataset, 2000-2009

NASA Astrophysics Data System (ADS)

Wang, L.; Derksen, C.; Howell, S.; Wolken, G. J.; Sharp, M. J.; Markus, T.

2009-12-01

The SeaWinds Scatterometer on QuikSCAT (QS) has been in orbit for over a decade since its launch in June 1999. Due to its high sensitivity to the appearance of liquid water in snow and day/night all weather capability, QS data have been successfully used to detect melt onset and melt duration for various elements of the cryosphere. These melt datasets are especially useful in the polar regions where the application of imagery from optical sensors is hindered by polar nights and frequent cloud cover. In this study, we generate a pan-Arctic, pan-cryosphere melt onset dataset by combining estimates from previously published algorithms optimized for individual cryospheric elements and applied to QS and Special Sensor Microwave Imager (SSM/I) data for the northern high latitude land surface, ice caps, large lakes, and sea ice. Comparisons of melt onset along the boundaries between different components of the cryosphere show that in general the integrated dataset provides consistent and spatially coherent melt onset estimates across the pan-Arctic. We present the climatology and the anomaly patterns in melt onset during 2000-2009, and identify synoptic-scale linkages between atmospheric conditions and the observed patterns. We also investigate the possible trends in melt onset in the pan-Arctic during the 10-year period.

Constraints on melt content of off-axis magma lenses at the East Pacific Rise from analysis of 3-D seismic amplitude variation with angle of incidence

NASA Astrophysics Data System (ADS)

Aghaei, Omid; Nedimović, Mladen R.; Marjanović, Milena; Carbotte, Suzanne M.; Pablo Canales, J.; Carton, Hélène; Nikić, Nikola

2017-06-01

We use 3-D multichannel seismic data to form partial angle P wave stacks and apply amplitude variation with angle (AVA) crossplotting to assess melt content and melt distribution within two large midcrustal off-axis magma lenses (OAMLs) found along the East Pacific Rise from 9°37.5'N to 9°57'N. The signal envelope of the partial angle stacks suggests that both OAMLs are partially molten with higher average melt content and more uniform melt distribution in the southern OAML than in the northern OAML. For AVA crossplotting, the OAMLs are subdivided into seven 1 km2 analysis windows. The AVA crossplotting results indicate that the OAMLs contain a smaller amount of melt than the axial magma lens (AML). For both OAMLs, a higher melt fraction is detected within analysis windows located close to the ridge axis than within the most distant windows. The highest average melt concentration is interpreted for the central sections of the OAMLs. The overall low OAML melt content could be indicative of melt lost due to recent off-axis eruptions, drainage to the AML, or limited mantle melt supply. Based on the results of this and earlier bathymetric, morphological, geochemical, and geophysical investigations, we propose that the melt-poor OAML state is largely the result of limited melt supply from the underlying mantle source reservoir with smaller contribution attributed to melt leakage to the AML. We hypothesize that the investigated OAMLs have a longer period of melt replenishment, lower eruption recurrence rates, and lower eruption volumes than the AML, though some could be single intrusion events.

Laboratory plant study on the melting process of asbestos waste

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sakai, Shinichi; Terazono, Atsushi; Takatsuki, Hiroshi

The melting process was studied as a method of changing asbestos into non-hazardous waste and recovering it as a reusable resource. In an initial effort, the thermal behaviors of asbestos waste in terms of physical and chemical structure have been studied. Then, 10 kg/h-scale laboratory plant experiments were carried out. By X-ray diffraction analysis, the thermal behaviors of sprayed-on asbestos waste revealed that chrysotile asbestos waste change in crystal structure at around 800 C, and becomes melted slag, mainly composed of magnesium silicate, at around 1,500 C. Laboratory plant experiments on the melting process of sprayed-on asbestos have shown thatmore » melted slag can be obtained. X-ray diffraction analysis of the melted slag revealed crystal structure change, and SEM analysis showed the slag to have a non-fibrous form. And more, TEM analysis proved the very high treatment efficiency of the process, that is, reduction of the asbestos content to 1/10{sup 6} as a weight basis. These analytical results indicate the effectiveness of the melting process for asbestos waste treatment.« less

Hot melt recharge system. [repairing damaged or missing tiles on space shuttle orbiter

NASA Technical Reports Server (NTRS)

Progar, D. J. (Inventor)

1983-01-01

A package assembly is described for pecisely positioning a charge of hot melt adhesive onto an attachment pad or point of use. The adhesive is heated to softening or melt temperature (280 F to 325 F) and thereafter cooled to resolidifying temperature. A single sided pressure sensitive polyimide film tape serves with another film strip to protect a sandwiched adhesive strip until use and to hold the adhesive in precise position until thermally bonded to its point of use. Tab ends serve as aids in stripping tapes and from the adhesive charge.

Tektite ablation - Some confirming calculations.

NASA Technical Reports Server (NTRS)

O'Keefe, J. A., III; Silver, A. D.; Cameron, W. S.; Adams , E. W.; Warmbrod, J. D.

1973-01-01

The calculation of tektite ablation has been redone, taking into account transient effects, internal radiation, melting and nonequilibrium vaporization of the glass, and the drag effect of the flanges. It is found that the results confirm the earlier calculations of Chapman and his group and of Adams and his co-workers. The general trend of the results is not sensitive to reasonable changes of the physical parameters. The ablation is predominantly by melting rather than by vaporization at all velocities up to 11 km/sec; this is surprising in view of the lack of detectable melt flow in most tektites. Chemical effects have not been considered.

Defining the chemical role of H2O in mantle melts: Effect of melt composition and H2O content on the activity of SiO2

NASA Astrophysics Data System (ADS)

Moore, G.; Roggensack, K.

2007-12-01

Quantifying the influence of volatiles (H2O, CO2) on the chemistry of mantle melts is a critical aspect of understanding the petrogenesis of arc magmas. A significant amount of experimental work done on the effect of H2O on the solidii of various mantle compositions, as well as on multiple saturation points of various primitive melts, has shown that H2O stabilizes olivine with respect to orthopyroxene. Or, in other words, at constant activity of SiO2, the presence of H2O decreases the activity coefficient of SiO2 in the melt, potentially leading to mantle melts that have suprisingly high SiO2 contents (Carmichael, 2002). Quantification and modelling of this behavior in hydrous silicate melts in equilibrium with the mantle have proven problematic, due mainly to a relatively small set of experiments that allow this type of thermodynamic analysis, and because of the experimental and analytical difficulties of dealing with hydrous high P-T samples (e.g. quench to a glass, rapid melt-solid reaction on quench, electron beam sensitivity of resulting glass, volatile content determination, etc). A further complication in the existing data includes co-variance of important experimental parameters (e.g. T and H2O content), making robust statistical regression analysis difficult and potentially misleading. We present here results of high P-T experiments conducted at a single pressure and temperature (1.0 GPa, 1200 deg C) that have the specific goal of quantifying the effect of H2O, as well as other melt components, on the activity coefficient of SiO2 in mantle melts. Using a "sandwich" type experiment, basaltic melts are saturated with an olivine plus orthopyroxene mineral assemblage with varying H2O and CO2 contents. The resulting samples have their bulk solid phase and glass compositions determined using EPMA, and the volatile content of the glass is determined by FTIR. The activity of SiO2 is then calculated using the olivine and orthopyroxene compositions. This value is then used, along with the mole fraction of SiO2 that is measured in the glass, to calculate an activity coefficient for SiO2 in that particular melt. The results show that for two starting compositions, H2O clearly has a strong negative effect on the activity coefficient of SiO2, consistent with some earlier intepretations. Further work is being conducted on differing starting compositions, as well as increasing the range of volatile contents, in order to better quantify their influence on this important chemical parameter of mantle melts. Ultimately, these experiments will help determine whether hydrous arc lavas, including high-Mg andesites, can be attributed to a primitive mantle origin, or whether other magmatic processes are necessary to generate their observed bulk compositions. It will also quantify the amount of H2O necessary to generate such magmas, giving insight into the potential H2O content present in the sub-arc mantle source regions, and allowing a more precise estimate of volatile fluxes in volcanic arc settings.

A Mathematical Model of Melt Lake Development on an Ice Shelf

NASA Astrophysics Data System (ADS)

Buzzard, S. C.; Feltham, D. L.; Flocco, D.

2018-02-01

The accumulation of surface meltwater on ice shelves can lead to the formation of melt lakes. Melt lakes have been implicated in ice shelf collapse; Antarctica's Larsen B Ice Shelf was observed to have a large amount of surface melt lakes present preceding its collapse in 2002. Such collapse can affect ocean circulation and temperature, cause habitat loss and contribute to sea level rise through the acceleration of tributary glaciers. We present a mathematical model of a surface melt lake on an idealized ice shelf. The model incorporates a calculation of the ice shelf surface energy balance, heat transfer through the firn, the production and percolation of meltwater into the firn, the formation of ice lenses, and the development and refreezing of surface melt lakes. The model is applied to the Larsen C Ice Shelf, where melt lakes have been observed. This region has warmed several times the global average over the last century and the Larsen C firn layer could become saturated with meltwater by the end of the century. When forced with weather station data, our model produces surface melting, meltwater accumulation, and melt lake development consistent with observations. We examine the sensitivity of lake formation to uncertain parameters and provide evidence of the importance of processes such as lateral meltwater transport. We conclude that melt lakes impact surface melt and firn density and warrant inclusion in dynamic-thermodynamic models of ice shelf evolution within climate models, of which our model could form the basis for the thermodynamic component.

Mix or un-mix? Trace element segregation from a heterogeneous mantle, simulated.

NASA Astrophysics Data System (ADS)

Katz, R. F.; Keller, T.; Warren, J. M.; Manley, G.

2016-12-01

Incompatible trace-element concentrations vary in mid-ocean ridge lavas and melt inclusions by an order of magnitude or more, even in samples from the same location. This variability has been attributed to channelised melt flow [Spiegelman & Kelemen, 2003], which brings enriched, low-degree melts to the surface in relative isolation from depleted inter-channel melts. We re-examine this hypothesis using a new melting-column model that incorporates mantle volatiles [Keller & Katz 2016]. Volatiles cause a deeper onset of channelisation: their corrosivity is maximum at the base of the silicate melting regime. We consider how source heterogeneity and melt transport shape trace-element concentrations in basaltic lavas. We use both equilibrium and non-equilibrium formulations [Spiegelman 1996]. In particular, we evaluate the effect of melt transport on probability distributions of trace element concentration, comparing the inflow distribution in the mantle with the outflow distribution in the magma. Which features of melt transport preserve, erase or overprint input correlations between elements? To address this we consider various hypotheses about mantle heterogeneity, allowing for spatial structure in major components, volatiles and trace elements. Of interest are the roles of wavelength, amplitude, and correlation of heterogeneity fields. To investigate how different modes of melt transport affect input distributions, we compare melting models that produce either shallow or deep channelisation, or none at all.References:Keller & Katz (2016). The Role of Volatiles in Reactive Melt Transport in the Asthenosphere. Journal of Petrology, http://doi.org/10.1093/petrology/egw030. Spiegelman (1996). Geochemical consequences of melt transport in 2-D: The sensitivity of trace elements to mantle dynamics. Earth and Planetary Science Letters, 139, 115-132. Spiegelman & Kelemen (2003). Extreme chemical variability as a consequence of channelized melt transport. Geochemistry Geophysics Geosystems, http://doi.org/10.1029/2002GC000336

Experimental research of phase transitions in a melt of high-purity aluminum

NASA Astrophysics Data System (ADS)

Vorontsov, V. B.; Pershin, V. K.

2017-12-01

This scientific work is devoted to the studying of the genetic connection structures of solid and liquid phases. In this paper Fourier analysis of acoustic emission (AE) signals accompanying heating of high purity aluminum from the melting point up to 860 °C was performed. The experimental data allowed to follow the dynamics of disorder zones in the melt with increasing melt temperature up to their complete destruction. The presented results of spectral analysis of the signals were analyzed from the standpoint of the theory of cluster melting metals.

Optically stimulated luminescence of borate glasses containing magnesia, quicklime, lithium and potassium carbonates

NASA Astrophysics Data System (ADS)

Valença, J. V. B.; Silveira, I. S.; Silva, A. C. A.; Dantas, N. O.; Antonio, P. L.; Caldas, L. V. E.; d'Errico, F.; Souza, S. O.

2017-11-01

The OSL characteristics of three different borate glass matrices containing magnesia (LMB), quicklime (LCB) or potassium carbonate (LKB) were examined. Five different formulations for each composition were produced using a melt-quenching method and analyzed in terms of both dose-response curves and OSL shape decay. The samples were irradiated using a 90Sr/90Y beta source with doses up to 30 Gy. Dose-response curves were plotted using the initial OSL intensity as the chosen parameter. The OSL analysis showed that LKB glasses are the most sensitive to beta irradiation. For the most sensitive LKB composition, the irradiation process was also done using a 60Co gamma source in a dose range from 200 to 800 Gy. In all cases, no saturation was observed. A fitting process using a three-term exponential function was performed for the most sensitive formulations of each composition, which suggested a similar behavior in the OSL decay.

Enhanced ice sheet melting driven by volcanic eruptions during the last deglaciation.

PubMed

Muschitiello, Francesco; Pausata, Francesco S R; Lea, James M; Mair, Douglas W F; Wohlfarth, Barbara

2017-10-24

Volcanic eruptions can impact the mass balance of ice sheets through changes in climate and the radiative properties of the ice. Yet, empirical evidence highlighting the sensitivity of ancient ice sheets to volcanism is scarce. Here we present an exceptionally well-dated annual glacial varve chronology recording the melting history of the Fennoscandian Ice Sheet at the end of the last deglaciation (∼13,200-12,000 years ago). Our data indicate that abrupt ice melting events coincide with volcanogenic aerosol emissions recorded in Greenland ice cores. We suggest that enhanced ice sheet runoff is primarily associated with albedo effects due to deposition of ash sourced from high-latitude volcanic eruptions. Climate and snowpack mass-balance simulations show evidence for enhanced ice sheet runoff under volcanically forced conditions despite atmospheric cooling. The sensitivity of past ice sheets to volcanic ashfall highlights the need for an accurate coupling between atmosphere and ice sheet components in climate models.

The influence of the hydrologic cycle on the extent of sea ice with climatic implications

NASA Technical Reports Server (NTRS)

Dean, Kenneson G.; Stringer, William J.; Searcy, Craig

1993-01-01

Multi-temporal satellite images, field observations, and field measurements were used to investigate the mechanisms by which sea ice melts offshore from the Mackenzie River delta. Advanced Very High Resolution Radiometer (AVHRR) satellite data recorded in 1986 were analyzed. The satellite data were geometrically corrected and radiometrically calibrated so that albedo and temperature values could be extracted. The investigation revealed that sea ice melted approximately 2 weeks earlier offshore from the Mackenzie River delta than along coasts where river discharge is minimal or non-existent. There is significant intra-delta variability in the timing and patterns of ice melt. An estimation of energy flux indicates that 30 percent more of the visible wavelength energy and 25 percent more of the near-infrared wavelength energy is absorbed by water offshore of the delta compared to coastal areas with minimal river discharge. The analysis also revealed that the removal of sea ice involves the following: over-ice-flooding along the coast offshore from river delta channels; under-ice flow of 'warm' river water; melting and calving of the fast ice; and, the formation of a bight in the pack ice edge. Two stages in the melting of sea ice were identified: (1) an early stage where heat is supplied to overflows largely by solar radiation, and (2) a later stage where heat is supplied by river discharge in addition to solar radiation. A simple thermodynamic model of the thaw process in the fast ice zone was developed and parameterized based on events recorded by the satellite images. The model treats river discharge as the source of sensible heat at the base of the ice cover. The results of a series of sensitivity tests to assess the influence of river discharge on the near shore ice are presented.

Experimental determination of the thermal conductivity of liquid UO2 near the melting point

NASA Astrophysics Data System (ADS)

Sheindlin, M.; Staicu, D.; Ronchi, C.; Game-Arnaud, L.; Remy, B.; Degiovanni, A.

2007-05-01

The article gives an account of measurements of the thermal conductivity of liquid UO2. The sample was heated up to above the melting point by a laser pulse of a controlled shape, and the produced thermogram of temperature history was measured by a fast and accurate pyrometer with a time resolution of 10 μs. The experiment shows that the rate of temperature increase during the ascending part of the pulse changes moderately across the melting point. Due to the high power input, this effect cannot be explained in terms of the sole intake of latent heat of fusion. By solving the related heat transfer equation with a 2D-axisymmetric numerical model, it is demonstrated that this feature depends principally on heat conduction in the sample, and proves that the thermal conductivities of solid and liquid are not very different. A theoretical sensitivity study assessing the influence of the liquid thermal conductivity on the pulse temperature evolution showed that the conductivity of the liquid can be deduced from the fitting of the thermograms with a numerical precision of the order of 1%. The analysis reveals that the thermal conductivity is weakly correlated with the effective heat losses during the pulse and to the melting enthalpy, so that the uncertainty in its evaluation by fitting the experimental thermograms with model predictions is satisfactory. The value of the thermal conductivity of liquid UO2 near the melting point resulted to be 2.6±0.35 W m-1 K-1, where the magnitude of the uncertainty is much lower than the scatter of the previously published, discordant measurements.

Ultrasensitive Detection of Drug-Resistant Pandemic 2009 (H1N1) Influenza A Virus by Rare-Variant-Sensitive High-Resolution Melting-Curve Analysis▿‡

PubMed Central

Chen, Neng; Pinsky, Benjamin A.; Lee, Betty P.; Lin, Min; Schrijver, Iris

2011-01-01

Oseltamivir (Tamiflu), an oral neuraminidase inhibitor, has been widely used to treat pandemic 2009 (H1N1) influenza A. Although a majority of 2009 (H1N1) influenza A virus remains oseltamivir susceptible, the threat of resistance due to the His275Tyr mutation is highlighted by the limitations of alternative therapies and the potential for rapid, global fixation of this mutation in the circulating influenza A virus population. In order to better understand the emergence of resistance, we developed a rare-variant-sensitive high-resolution melting-curve analysis method (RVS-HRM) that is able to detect the His275Tyr oseltamivir resistance mutation to 0.5% in a background of susceptible virus. We applied RVS-HRM to clinical specimens from patients who developed oseltamivir resistance and demonstrated the ultrasensitive detection of influenza A virus N1 neuraminidase quasispecies. Interestingly, we were unable to detect the oseltamivir resistance mutation in pretreatment samples, suggesting that resistant virus does not reach even this very low detection threshold until exposed to selective drug pressure. Thus, patients naive to oseltamivir are most likely to be susceptible when this drug is used as a first-line treatment modality. PMID:21543559

Molecular differentiation of Opisthorchis viverrini and Clonorchis sinensis eggs by multiplex real-time PCR with high resolution melting analysis.

PubMed

Kaewkong, Worasak; Intapan, Pewpan M; Sanpool, Oranuch; Janwan, Penchom; Thanchomnang, Tongjit; Laummaunwai, Porntip; Lulitanond, Viraphong; Doanh, Pham Ngoc; Maleewong, Wanchai

2013-12-01

Opisthorchis viverrini and Clonorchis sinensis are parasites known to be carcinogenic and causative agents of cholangiocarcinoma in Asia. The standard method for diagnosis for those parasite infections is stool examination to detect parasite eggs. However, the method has low sensitivity, and eggs of O. viverrini and C. sinensis are difficult to distinguish from each other and from those of some other trematodes. Here, we report a multiplex real-time PCR coupled with high resolution melting (HRM) analysis for the differentiation of O. viverrini and C. sinensis eggs in fecal samples. Using 2 pairs of species-specific primers, DNA sequences from a portion of the mitochondrial NADH dehydrogenase subunit 2 (nad 2) gene, were amplified to generate 209 and 165 bp products for O. viverrini and C. sinensis, respectively. The distinct characteristics of HRM patterns were analyzed, and the melting temperatures peaked at 82.4±0.09℃ and 85.9±0.08℃ for O. viverrini and C. sinensis, respectively. This technique was able to detect as few as 1 egg of O. viverrini and 2 eggs of C. sinensis in a 150 mg fecal sample, which is equivalent to 7 and 14 eggs per gram of feces, respectively. The method is species-specific, rapid, simple, and does not require fluorescent probes or post-PCR processing for discrimination of eggs of the 2 species. It offers a new tool for differentiation and detection of Asian liver fluke infections in stool specimens.

Comparative analysis of changes in gene expression due to RNA melting activities of translation initiation factor IF1 and a cold shock protein of the CspA family.

PubMed

Phadtare, Sangita; Severinov, Konstantin

2009-11-01

In Escherichia coli, temperature downshift elicits cold shock response, which is characterized by induction of cold shock proteins. CspA, the major cold shock protein of E. coli, helps cells to acclimatize to low temperature by melting the secondary structures in nucleic acids and acting as a transcription antiterminator. CspA and its homologues contain the cold shock domain and belong to the oligomer binding protein family, which also includes S1 domain proteins such as IF1. Structural similarity between IF1 and CspA homologues suggested a functional overlap between these proteins. Indeed IF1 can melt secondary structures in RNA and acts as transcription antiterminator in vivo and in vitro. Here, we show that in spite of having these critical activities, IF1 does not complement cold-sensitivity of a csp quadruple deletion strain. DNA microarray analysis shows that overproduction of IF1 and Csp leads to changes in expression of different sets of genes. Importantly, several genes which were previously shown to require Csp proteins for their expression at low temperature did not respond to IF1. Moreover, in vitro, we show that a transcription terminator responsive to Csp does not respond to IF1. Our results suggest that Csp proteins and IF1 have different sets of target genes as they may be suppressing the function of different types of transcription termination elements in specific genes.

Rapid detection and identification of four major Schistosoma species by high-resolution melt (HRM) analysis.

PubMed

Li, Juan; Zhao, Guang-Hui; Lin, RuiQing; Blair, David; Sugiyama, Hiromu; Zhu, Xing-Quan

2015-11-01

Schistosomiasis, caused by blood flukes belonging to several species of the genus Schistosoma, is a serious and widespread parasitic disease. Accurate and rapid differentiation of these etiological agents of animal and human schistosomiasis to species level can be difficult. We report a real-time PCR assay coupled with a high-resolution melt (HRM) assay targeting a portion of the nuclear 18S rDNA to detect, identify, and distinguish between four major blood fluke species (Schistosoma japonicum, Schistosoma mansoni, Schistosoma haematobium, and Schistosoma mekongi). Using this system, the Schistosoma spp. was accurately identified and could also be distinguished from all other trematode species with which they were compared. As little as 10(-5) ng genomic DNA from a Schistosoma sp. could be detected. This process is inexpensive, easy, and can be completed within 3 h. Examination of 21 representative Schistosoma samples from 15 geographical localities in seven endemic countries validated the value of the HRM detection assay and proved its reliability. The melting curves were characterized by peaks of 83.65 °C for S. japonicum and S. mekongi, 85.65 °C for S. mansoni, and 85.85 °C for S. haematobium. The present study developed a real-time PCR coupled with HRM analysis assay for detection and differential identification of S. mansoni, S. haematobium, S. japonicum, and S. mekongi. This method is rapid, sensitive, and inexpensive. It has important implications for epidemiological studies of Schistosoma.

GPS-derived estimates of surface mass balance and ocean-induced basal melt for Pine Island Glacier ice shelf, Antarctica

NASA Astrophysics Data System (ADS)

Shean, David E.; Christianson, Knut; Larson, Kristine M.; Ligtenberg, Stefan R. M.; Joughin, Ian R.; Smith, Ben E.; Stevens, C. Max; Bushuk, Mitchell; Holland, David M.

2017-11-01

In the last 2 decades, Pine Island Glacier (PIG) experienced marked speedup, thinning, and grounding-line retreat, likely due to marine ice-sheet instability and ice-shelf basal melt. To better understand these processes, we combined 2008-2010 and 2012-2014 GPS records with dynamic firn model output to constrain local surface and basal mass balance for PIG. We used GPS interferometric reflectometry to precisely measure absolute surface elevation (zsurf) and Lagrangian surface elevation change (Dzsurf/ Dt). Observed surface elevation relative to a firn layer tracer for the initial surface (zsurf - zsurf0') is consistent with model estimates of surface mass balance (SMB, primarily snow accumulation). A relatively abrupt ˜ 0.2-0.3 m surface elevation decrease, likely due to surface melt and increased compaction rates, is observed during a period of warm atmospheric temperatures from December 2012 to January 2013. Observed Dzsurf/ Dt trends (-1 to -4 m yr-1) for the PIG shelf sites are all highly linear. Corresponding basal melt rate estimates range from ˜ 10 to 40 m yr-1, in good agreement with those derived from ice-bottom acoustic ranging, phase-sensitive ice-penetrating radar, and high-resolution stereo digital elevation model (DEM) records. The GPS and DEM records document higher melt rates within and near features associated with longitudinal extension (i.e., transverse surface depressions, rifts). Basal melt rates for the 2012-2014 period show limited temporal variability despite large changes in ocean temperature recorded by moorings in Pine Island Bay. Our results demonstrate the value of long-term GPS records for ice-shelf mass balance studies, with implications for the sensitivity of ice-ocean interaction at PIG.

Image analysis of speckle patterns as a probe of melting transitions in laser-heated diamond anvil cell experiments.

PubMed

Salem, Ran; Matityahu, Shlomi; Melchior, Aviva; Nikolaevsky, Mark; Noked, Ori; Sterer, Eran

2015-09-01

The precision of melting curve measurements using laser-heated diamond anvil cell (LHDAC) is largely limited by the correct and reliable determination of the onset of melting. We present a novel image analysis of speckle interference patterns in the LHDAC as a way to define quantitative measures which enable an objective determination of the melting transition. Combined with our low-temperature customized IR pyrometer, designed for measurements down to 500 K, our setup allows studying the melting curve of materials with low melting temperatures, with relatively high precision. As an application, the melting curve of Te was measured up to 35 GPa. The results are found to be in good agreement with previous data obtained at pressures up to 10 GPa.

Corrosion testing of zirconia, beryllia and magnesia ceramics in molten alkali metal carbonates at 900 °C

NASA Astrophysics Data System (ADS)

Kaplan, Valery; Bendikov, Tatyana; Feldman, Yishay; Gartsman, Konstantin; Wachtel, Ellen; Lubomirsky, Igor

2016-01-01

An electrochemical cell containing molten Li2CO3-Li2O at 900 °C has been proposed for the conversion of the greenhouse gas CO2 to CO for chemical energy storage. In the current work, we have examined the corrosion resistance of zirconia, beryllia and magnesia ceramics at 900 °C in the Li2CO3-Li2O and Li-Na-K carbonate eutectic mixtures to identify suitable electrically insulating materials. Conclusions regarding material stability were based on elemental analysis of the melt, primarily via X-ray photoelectron spectroscopy, a particularly sensitive technique. It was found that magnesia is completely stable for at least 33 h in a Li2CO3-Li2O melt, while a combined lithium titanate/lithium zirconate layer forms on the zirconia ceramic as detected by XRD. Under the same melt conditions, beryllia shows considerable leaching into solution. In a Li-Na-K carbonate eutectic mixture containing 10.2 mol% oxide at 900 °C under standard atmospheric conditions, magnesia showed no signs of degradation. Stabilization of the zirconia content of the eutectic mixture at 0.01-0.02 at% after 2 h is explained by the formation of a lithium zirconate coating on the ceramic. On the basis of these results, we conclude that only magnesia can be satisfactorily used as an insulating material in electrolysis cells containing Li2CO3-Li2O melts.

Rapid and accurate identification of Mycobacterium tuberculosis complex and common non-tuberculous mycobacteria by multiplex real-time PCR targeting different housekeeping genes.

PubMed

Nasr Esfahani, Bahram; Rezaei Yazdi, Hadi; Moghim, Sharareh; Ghasemian Safaei, Hajieh; Zarkesh Esfahani, Hamid

2012-11-01

Rapid and accurate identification of mycobacteria isolates from primary culture is important due to timely and appropriate antibiotic therapy. Conventional methods for identification of Mycobacterium species based on biochemical tests needs several weeks and may remain inconclusive. In this study, a novel multiplex real-time PCR was developed for rapid identification of Mycobacterium genus, Mycobacterium tuberculosis complex (MTC) and the most common non-tuberculosis mycobacteria species including M. abscessus, M. fortuitum, M. avium complex, M. kansasii, and the M. gordonae in three reaction tubes but under same PCR condition. Genetic targets for primer designing included the 16S rDNA gene, the dnaJ gene, the gyrB gene and internal transcribed spacer (ITS). Multiplex real-time PCR was setup with reference Mycobacterium strains and was subsequently tested with 66 clinical isolates. Results of multiplex real-time PCR were analyzed with melting curves and melting temperature (T (m)) of Mycobacterium genus, MTC, and each of non-tuberculosis Mycobacterium species were determined. Multiplex real-time PCR results were compared with amplification and sequencing of 16S-23S rDNA ITS for identification of Mycobacterium species. Sensitivity and specificity of designed primers were each 100 % for MTC, M. abscessus, M. fortuitum, M. avium complex, M. kansasii, and M. gordonae. Sensitivity and specificity of designed primer for genus Mycobacterium was 96 and 100 %, respectively. According to the obtained results, we conclude that this multiplex real-time PCR with melting curve analysis and these novel primers can be used for rapid and accurate identification of genus Mycobacterium, MTC, and the most common non-tuberculosis Mycobacterium species.

Sustainability of winter tourism in a changing climate over Kashmir Himalaya.

PubMed

Dar, Reyaz Ahmad; Rashid, Irfan; Romshoo, Shakil Ahmad; Marazi, Asif

2014-04-01

Mountain areas are sensitive to climate change. Implications of climate change can be seen in less snow, receding glaciers, increasing temperatures, and decreasing precipitation. Climate change is also a severe threat to snow-related winter sports such as skiing, snowboarding, and cross-country skiing. The change in climate will put further pressure on the sensitive environment of high mountains. Therefore, in this study, an attempt has been made to know the impact of climate change on the snow precipitation, water resources, and winter tourism in the two famous tourist resorts of the Kashmir Valley. Our findings show that winters are getting prolonged with little snow falls on account of climate change. The average minimum and maximum temperatures are showing statistically significant increasing trends for winter months. The precipitation is showing decreasing trends in both the regions. A considerable area in these regions remains under the snow and glacier cover throughout the year especially during the winter and spring seasons. However, time series analysis of LandSat MODIS images using Normalized Difference Snow Index shows a decreasing trend in snow cover in both the regions from past few years. Similarly, the stream discharge, comprising predominantly of snow- and glacier-melt, is showing a statistically significant declining trend despite the melting of these glaciers. The predicted futuristic trends of temperature from Predicting Regional Climates for Impact Studies regional climate model are showing an increase which may enhance snow-melting in the near future posing a serious threat to the sustainability of winter tourism in the region. Hence, it becomes essential to monitor the changes in temperature and snow cover depletion in these basins in order to evaluate their effect on the winter tourism and water resources in the region.

Melt segregation from partially molten source regions - The importance of melt density and source region size

NASA Technical Reports Server (NTRS)

Stolper, E.; Hager, B. H.; Walker, D.; Hays, J. F.

1981-01-01

An investigation is conducted regarding the changes expected in the density contrast between basic melts and peridotites with increasing pressure using the limited data available on the compressibilities of silicate melts and data on the densities of mantle minerals. It is concluded that since compressibilities of silicate melts are about an order of magnitude greater than those of mantle minerals, the density contrast between basic melts and mantle minerals must diminish significantly with increasing pressure. An earlier analysis regarding the migration of liquid in partially molten source regions conducted by Walker et al. (1978) is extended, giving particular attention to the influence of the diminished density contrast between melt and residual crystals with increasing source region depth and to the influence of source region size. This analysis leads to several generalizations concerning the factors influencing the depths at which magmas will segregate from their source regions and the degrees of partial melting that can be achieved in these source regions before melt segregation occurs.

Product differentiation by analysis of DNA melting curves during the polymerase chain reaction.

PubMed

Ririe, K M; Rasmussen, R P; Wittwer, C T

1997-02-15

A microvolume fluorometer integrated with a thermal cycler was used to acquire DNA melting curves during polymerase chain reaction by fluorescence monitoring of the double-stranded DNA specific dye SYBR Green I. Plotting fluorescence as a function of temperature as the thermal cycler heats through the dissociation temperature of the product gives a DNA melting curve. The shape and position of this DNA melting curve are functions of the GC/AT ratio, length, and sequence and can be used to differentiate amplification products separated by less than 2 degrees C in melting temperature. Desired products can be distinguished from undesirable products, in many cases eliminating the need for gel electrophoresis. Analysis of melting curves can extend the dynamic range of initial template quantification when amplification is monitored with double-stranded DNA specific dyes. Complete amplification and analysis of products can be performed in less than 15 min.

Methylation-sensitive high-resolution melting-curve analysis of the SNRPN gene as a diagnostic screen for Prader-Willi and Angelman syndromes.

PubMed

White, Helen E; Hall, Victoria J; Cross, Nicholas C P

2007-11-01

Angelman syndrome (AS) and Prader-Willi syndrome (PWS) are 2 distinct neurodevelopmental disorders caused primarily by deficiency of specific parental contributions at an imprinted domain within the chromosomal region 15q11.2-13. Lack of paternal contribution results in PWS either by paternal deletion (approximately 70%) or maternal uniparental disomy (UPD) (approximately 25%). Most cases of AS result from the lack of a maternal contribution from this same region, by maternal deletion (70%) or paternal UPD (approximately 5%). Analysis of allelic methylation differences at the small nuclear ribonucleoprotein polypeptide N (SNRPN) locus differentiates the maternally and paternally inherited chromosome 15 and can be used as a diagnostic test for AS and PWS. Methylation-sensitive high-resolution melting-curve analysis (MS-HRM) using the DNA binding dye EvaGreen was used to analyze methylation differences at the SNRPN locus in anonymized DNA samples from individuals with PWS (n = 39) or AS (n = 31) and from healthy control individuals (n = 95). Results from the MS-HRM assay were compared to those obtained by use of a methylation-specific PCR (MSP) protocol that is used commonly in diagnostic practice. With the MS-HRM assay 97.6% of samples were unambiguously assigned to the 3 diagnostic categories (AS, PWS, normal) by use of automated calling with an 80% confidence percentage threshold, and the failure rate was 0.6%. One PWS sample showed a discordant result for the MS-HRM assay compared to MSP data. MS-HRM is a simple, rapid, and robust method for screening methylation differences at the SNRPN locus and could be used as a diagnostic screen for PWS and AS.

Detecting differential allelic expression using high-resolution melting curve analysis: application to the breast cancer susceptibility gene CHEK2

PubMed Central

2011-01-01

Background The gene CHEK2 encodes a checkpoint kinase playing a key role in the DNA damage pathway. Though CHEK2 has been identified as an intermediate breast cancer susceptibility gene, only a small proportion of high-risk families have been explained by genetic variants located in its coding region. Alteration in gene expression regulation provides a potential mechanism for generating disease susceptibility. The detection of differential allelic expression (DAE) represents a sensitive assay to direct the search for a functional sequence variant within the transcriptional regulatory elements of a candidate gene. We aimed to assess whether CHEK2 was subject to DAE in lymphoblastoid cell lines (LCLs) from high-risk breast cancer patients for whom no mutation in BRCA1 or BRCA2 had been identified. Methods We implemented an assay based on high-resolution melting (HRM) curve analysis and developed an analysis tool for DAE assessment. Results We observed allelic expression imbalance in 4 of the 41 LCLs examined. All four were carriers of the truncating mutation 1100delC. We confirmed previous findings that this mutation induces non-sense mediated mRNA decay. In our series, we ruled out the possibility of a functional sequence variant located in the promoter region or in a regulatory element of CHEK2 that would lead to DAE in the transcriptional regulatory milieu of freely proliferating LCLs. Conclusions Our results support that HRM is a sensitive and accurate method for DAE assessment. This approach would be of great interest for high-throughput mutation screening projects aiming to identify genes carrying functional regulatory polymorphisms. PMID:21569354

Comparison of HPMC based polymers performance as carriers for manufacture of solid dispersions using the melt extruder.

PubMed

Ghosh, Indrajit; Snyder, Jennifer; Vippagunta, Radha; Alvine, Marilyn; Vakil, Ronak; Tong, Wei-Qin; Vippagunta, Sudha

2011-10-31

Preparation of amorphous solid dispersions using hot-melt extrusion process for poorly water soluble compounds which degrade on melting remains a challenge due to exposure to high temperatures. The aim of this study was to develop a physically and chemically stable amorphous solid dispersion of a poorly water-soluble compound, NVS981, which is highly thermal sensitive and degrades upon melting at 165 °C. Hydroxypropyl Methyl Cellulose (HPMC) based polymers; HPMC 3cps, HPMC phthalate (HPMCP) and HPMC acetyl succinate (HPMCAS) were selected as carriers to prepare solid dispersions using hot melt extrusion because of their relatively low glass transition temperatures. The solid dispersions were compared for their ease of manufacturing, physical stability such as recrystallization potential, phase separation, molecular mobility and enhancement of drug dissolution. Two different drug loads of 20 and 50% (w/w) were studied in each polymer system. It was interesting to note that solid dispersions with 50% (w/w) drug load were easier to process in the melt extruder compared to 20% (w/w) drug load in all three carriers, which was attributed to the plasticizing behavior of the drug substance. Upon storage at accelerated stability conditions, no phase separation was observed in HPMC 3cps and HPMCAS solid dispersions at the lower and higher drug load, whereas for HPMCP, phase separation was observed at higher drug load after 3 months. The pharmaceutical performance of these solid dispersions was evaluated by studying drug dissolution in pH 6.8 phosphate buffer. Drug release from solid dispersion prepared from polymers used for enteric coating, i.e. HPMCP and HPMCAS was faster compared with the water soluble polymer HPMC 3cps. In conclusion, of the 3 polymers studied for preparing solid dispersions of thermally sensitive compound using hot melt extrusion, HPMCAS was found to be the most promising as it was easily processible and provided stable solid dispersions with enhanced dissolution. Copyright © 2011 Elsevier B.V. All rights reserved.

Ocean stratification reduces melt rates at the grounding zone of the Ross Ice Shelf

NASA Astrophysics Data System (ADS)

Begeman, C. B.; Tulaczyk, S. M.; Marsh, O.; Mikucki, J.; Stanton, T. P.; Hodson, T. O.; Siegfried, M. R.; Powell, R. D.; Christianson, K. A.; King, M. A.

2017-12-01

Ocean-driven melting of ice shelves is often invoked as the primary mechanism for triggering ice loss from Antarctica. However, due to the difficulty in accessing the sub-ice-shelf ocean cavity, the relationship between ice-shelf melt rates and ocean conditions is poorly understood, particularly near the transition from grounded to floating ice, known as the grounding zone. Here we present the first borehole oceanographic observations from the grounding zone of Antarctica's largest ice shelf. Contrary to predictions that tidal currents near grounding zones should mix the water column, driving high ice-shelf melt rates, we find a stratified sub-ice-shelf water column. The vertical salinity gradient dominates stratification over a weakly unstable vertical temperature gradient; thus, stratification takes the form of a double-diffusive staircase. These conditions limit vertical heat fluxes and lead to low melt rates in the ice-shelf grounding zone. While modern grounding zone melt rates may presently be overestimated in models that assume efficient tidal mixing, the high sensitivity of double-diffusive staircases to ocean freshening and warming suggests future melt rates may be underestimated, biasing projections of global sea-level rise.

Modeling of submarine melting in Petermann Fjord, Northwestern Greenland using an ocean general circulation model

NASA Astrophysics Data System (ADS)

Cai, C.; Rignot, E. J.; Xu, Y.; An, L.

2013-12-01

Basal melting of the floating tongue of Petermann Glacier, in northwestern Greenland is by far the largest process of mass ablation. Melting of the floating tongue is controlled by the buoyancy of the melt water plume, the pressure-dependence of the melting point of sea ice, and the mixing of warm subsurface water with fresh buoyant subglacial discharge. In prior simulations of this melting process, the role of subglacial discharge has been neglected because in similar configurations (floating ice shelves) in the Antarctic, surface runoff is negligible; this is however not true in Greenland. Here, we use the Mass Institute of Technology general circulation model (MITgcm) at a high spatial resolution (10 m x 10 m) to simulate the melting process of the ice shelf in 2-D. the model is constrained by ice shelf bathymetry and ice thickness from NASA Operation IceBridge, ocean temperature/salinity data from Johnson et al. (2011), and subglacial discharge estimated from output products of the Regional Atmospheric Climate Model (RACMO). We compare the results obtained in winter (no runoff) with summer, and the sensitivity of the results to thermal forcing from the ocean, and to the magnitude of subglacial runoff. We conclude on the impact of the ocean and surface melting on the melting regime of the floating ice tongue of Petermann. This work is performed under a contract with NASA Cryosphere Program.

An efficient method of reducing glass dispersion tolerance sensitivity

NASA Astrophysics Data System (ADS)

Sparrold, Scott W.; Shepard, R. Hamilton

2014-12-01

Constraining the Seidel aberrations of optical surfaces is a common technique for relaxing tolerance sensitivities in the optimization process. We offer an observation that a lens's Abbe number tolerance is directly related to the magnitude by which its longitudinal and transverse color are permitted to vary in production. Based on this observation, we propose a computationally efficient and easy-to-use merit function constraint for relaxing dispersion tolerance sensitivity. Using the relationship between an element's chromatic aberration and dispersion sensitivity, we derive a fundamental limit for lens scale and power that is capable of achieving high production yield for a given performance specification, which provides insight on the point at which lens splitting or melt fitting becomes necessary. The theory is validated by comparing its predictions to a formal tolerance analysis of a Cooke Triplet, and then applied to the design of a 1.5x visible linescan lens to illustrate optimization for reduced dispersion sensitivity. A selection of lenses in high volume production is then used to corroborate the proposed method of dispersion tolerance allocation.

Thermally induced chain orientation for improved thermal conductivity of P(VDF-TrFE) thin films

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhao, Junnan; Tan, Aaron C.; Green, Peter F.

2017-01-01

A large increase in thermal conductivityκwas observed in a P(VDF-TrFE) thin film annealed above melting temperature due to extensive ordering of polymer backbone chains perpendicular to the substrate after recrystallization from the melt. This finding may lay out a straightforward method to improve the thin filmκof semicrystalline polymers whose chain orientation is sensitive to thermal annealing.

Evidence of two-stage melting of Wigner solids

NASA Astrophysics Data System (ADS)

Knighton, Talbot; Wu, Zhe; Huang, Jian; Serafin, Alessandro; Xia, J. S.; Pfeiffer, L. N.; West, K. W.

2018-02-01

Ultralow carrier concentrations of two-dimensional holes down to p =1 ×109cm-2 are realized. Remarkable insulating states are found below a critical density of pc=4 ×109cm-2 or rs≈40 . Sensitive dc V-I measurement as a function of temperature and electric field reveals a two-stage phase transition supporting the melting of a Wigner solid as a two-stage first-order transition.

Ocean mixing beneath Pine Island Glacier ice shelf, West Antarctica

NASA Astrophysics Data System (ADS)

Kimura, Satoshi; Jenkins, Adrian; Dutrieux, Pierre; Forryan, Alexander; Naveira Garabato, Alberto C.; Firing, Yvonne

2016-12-01

Ice shelves around Antarctica are vulnerable to an increase in ocean-driven melting, with the melt rate depending on ocean temperature and the strength of flow inside the ice-shelf cavities. We present measurements of velocity, temperature, salinity, turbulent kinetic energy dissipation rate, and thermal variance dissipation rate beneath Pine Island Glacier ice shelf, West Antarctica. These measurements were obtained by CTD, ADCP, and turbulence sensors mounted on an Autonomous Underwater Vehicle (AUV). The highest turbulent kinetic energy dissipation rate is found near the grounding line. The thermal variance dissipation rate increases closer to the ice-shelf base, with a maximum value found ˜0.5 m away from the ice. The measurements of turbulent kinetic energy dissipation rate near the ice are used to estimate basal melting of the ice shelf. The dissipation-rate-based melt rate estimates is sensitive to the stability correction parameter in the linear approximation of universal function of the Monin-Obukhov similarity theory for stratified boundary layers. We argue that our estimates of basal melting from dissipation rates are within a range of previous estimates of basal melting.

Laser powder-bed fusion additive manufacturing: Physics of complex melt flow and formation mechanisms of pores, spatter, and denudation zones

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khairallah, Saad A.; Anderson, Andrew T.; Rubenchik, Alexander

Our study demonstrates the significant effect of the recoil pressure and Marangoni convection in laser powder bed fusion (L-PBF) of 316L stainless steel. A three-dimensional high fidelity powder-scale model reveals how the strong dynamical melt flow generates pore defects, material spattering (sparking), and denudation zones. The melt track is divided into three sections: a topological depression, a transition and a tail region, each being the location of specific physical effects. The inclusion of laser ray-tracing energy deposition in the powder-scale model improves over traditional volumetric energy deposition. It enables partial particle melting, which impacts pore defects in the denudation zone.more » Different pore formation mechanisms are observed at the edge of a scan track, at the melt pool bottom (during collapse of the pool depression), and at the end of the melt track (during laser power ramp down). Finally, we discuss remedies to these undesirable pores are discussed. The results are validated against the experiments and the sensitivity to laser absorptivity.« less

How will melting of ice affect volcanic hazards in the twenty-first century?

PubMed

Tuffen, Hugh

2010-05-28

Glaciers and ice sheets on many active volcanoes are rapidly receding. There is compelling evidence that melting of ice during the last deglaciation triggered a dramatic acceleration in volcanic activity. Will melting of ice this century, which is associated with climate change, similarly affect volcanic activity and associated hazards? This paper provides a critical overview of the evidence that current melting of ice will increase the frequency or size of hazardous volcanic eruptions. Many aspects of the link between ice recession and accelerated volcanic activity remain poorly understood. Key questions include how rapidly volcanic systems react to melting of ice, whether volcanoes are sensitive to small changes in ice thickness and how recession of ice affects the generation, storage and eruption of magma at stratovolcanoes. A greater frequency of collapse events at glaciated stratovolcanoes can be expected in the near future, and there is strong potential for positive feedbacks between melting of ice and enhanced volcanism. Nonetheless, much further research is required to remove current uncertainties about the implications of climate change for volcanic hazards in the twenty-first century.

Laser powder-bed fusion additive manufacturing: Physics of complex melt flow and formation mechanisms of pores, spatter, and denudation zones

DOE PAGES

Khairallah, Saad A.; Anderson, Andrew T.; Rubenchik, Alexander; ...

2016-02-23

Our study demonstrates the significant effect of the recoil pressure and Marangoni convection in laser powder bed fusion (L-PBF) of 316L stainless steel. A three-dimensional high fidelity powder-scale model reveals how the strong dynamical melt flow generates pore defects, material spattering (sparking), and denudation zones. The melt track is divided into three sections: a topological depression, a transition and a tail region, each being the location of specific physical effects. The inclusion of laser ray-tracing energy deposition in the powder-scale model improves over traditional volumetric energy deposition. It enables partial particle melting, which impacts pore defects in the denudation zone.more » Different pore formation mechanisms are observed at the edge of a scan track, at the melt pool bottom (during collapse of the pool depression), and at the end of the melt track (during laser power ramp down). Finally, we discuss remedies to these undesirable pores are discussed. The results are validated against the experiments and the sensitivity to laser absorptivity.« less

Triacylglycerols determine the unusual storage physiology of Cuphea seed.

PubMed

Crane, Jennifer; Miller, Annette L; van Roekel, J William; Walters, Christina

2003-09-01

Many species within the genus Cuphea (Lythraceae) produce seed with high levels of medium-chain fatty acids. Seeds of some Cuphea species lose viability when placed into storage at -18 degrees C. These species tolerate significant drying to 0.05 g/g and may, therefore, be intermediate in their storage characteristics. The thermal properties of seed lipids were observed using differential scanning calorimetry. Species with peak lipid melting temperatures >/=27 degrees C were found to be sensitive to -18 degrees C exposure while those with melting temperatures <27 degrees C were able to tolerate low-temperature exposure. This relationship was determined by the triacylglycerol composition of the individual species. Sensitive species have high concentrations of lauric acid (C(12)) and/or myristic acid (C(14)). Species with high concentrations of capric (C(8)) or caprylic acid (C(10)) or with high concentrations of unsaturated fatty acids tolerate low temperature exposure. Potential damage caused by low temperature exposure can be avoided by exposing seeds to a brief heat pulse of 45 degrees C to melt solidified lipids prior to imbibition. The relationship between the behavior of triacylglycerols in vivo, seed storage behavior and sensitivity to imbibitional damage is previously unreported and may apply to other species with physiologies that make them difficult to store.

In-situ GPS records of surface mass balance, firn compaction rates, and ice-shelf basal melt rates for Pine Island Glacier, Antarctica

NASA Astrophysics Data System (ADS)

Shean, D. E.; Christianson, K.; Larson, K. M.; Ligtenberg, S.; Joughin, I. R.; Smith, B.; Stevens, C.

2016-12-01

In recent decades, Pine Island Glacier (PIG) has experienced marked retreat, speedup and thinning due to ice-shelf basal melt, internal ice-stream instability and feedbacks between these processes. In an effort to constrain recent ice-stream dynamics and evaluate potential causes of retreat, we analyzed 2008-2010 and 2012-2014 GPS records for PIG. We computed time series of horizontal velocity, strain rate, multipath-based antenna height, surface elevation, and Lagrangian elevation change (Dh/Dt). These data provide validation for complementary high-resolution WorldView stereo digital elevation model (DEM) records, with sampled DEM vertical error of 0.7 m. The GPS antenna height time series document a relative surface elevation increase of 0.7-1.0 m/yr, which is consistent with estimated surface mass balance (SMB) of 0.7-0.9 m.w.e./yr from RACMO2.3 and firn compaction rates from the IMAU-FDM dynamic firn model. An abrupt 0.2-0.3 m surface elevation decrease due to surface melt and/or greater near-surface firn compaction is observed during a period of warm atmospheric temperatures from December 2012 to January 2013. Observed surface Dh/Dt for all PIG shelf sites is highly linear with trends of -1 to -4 m/yr and <0.4 m residuals. Similar Dh/Dt estimates with reduced variability are obtained after removing expected downward GPS pole base velocity from observed GPS antenna Dh/Dt. Estimated Dh/Dt basal melt rates are 10 to 40 m/yr for the outer PIG shelf and 4 m/yr for the South shelf. These melt rates are similar to those derived from ice-bottom acoustic ranging, phase-sensitive ice-penetrating radar, and high-resolution stereo DEM records. The GPS/DEM records document higher melt rates within and near transverse surface depressions and rifts associated with longitudinal extension. Basal melt rates for the 2012-2014 period show limited temporal variability, despite significant change in ocean heat content. This suggests that sub-shelf melt rates are less sensitive to ocean heat content than previously reported, at least for these locations and time periods.

A reversible transition in liquid Bi under pressure.

PubMed

Emuna, M; Matityahu, S; Yahel, E; Makov, G; Greenberg, Y

2018-01-21

The electrical resistance of solid and liquid Bi has been measured at high pressures and temperatures using a novel experimental design for high sensitivity measurements utilizing a "Paris-Edinburgh" toroid large volume press. An anomalous sharp decrease in resistivity with increasing temperature at constant pressures was observed in the region beyond melting which implies a possible novel transition in the melt. The proposed transition was observed across a range of pressures both in heating and cooling cycles of the sample demonstrating its reversibility. From the measurements it was possible to determine a "phase-line" of this transition on the Bi pressure-temperature phase diagram terminating at the melting curve.

Diagnosis and identification of Leishmania spp. from Giemsa-stained slides, by real-time PCR and melting curve analysis in south-west of Iran.

PubMed

Khademvatan, S; Neisi, N; Maraghi, S; Saki, J

2011-12-01

The aim of present study was describing a real-time PCR assay for the diagnosis and direct identification of Leishmania species on Giemsa-stained slides in south-west of Iran. Altogether, 102 Giemsa-stained slides were collected from different part of south-west of Iran between 2008 and 2011. All the Giemsa-stained slides were examined under light microscope. After DNA extraction, real-time PCR amplification and detection were conducted with fluorescent SYBR Green I. For identification, PCR products were analysed with melting curve analysis. One hundred and two archived slides from suspected lesion examined by microscopy and real-time PCR. The sensitivity of the real-time PCR on Giemsa-stained slid was 98% (96/102). The melting curve analysis (T(m)) were 88·3±0·2°C for L. tropica (MHOM/IR/02/Mash10), 86·5±0·2°C for L. major (MHOM/IR/75/ER) and 89·4±0·3°C for L. infantum (MCAN/IR/97/LON 49), respectively. This study is first report in use of real-time PCR for diagnosis and identification of Leishmania spp. in Iran. Up to now, in Iran, the majority of identification of Leishmania species is restriction fragment length polymorphism (PCR-RFLP) of ITS1 and kinetoplast DNA. Our data showed that Giemsa-stained slides that were stored more than 3 years, can be use for Leishmania DNA extraction and amplification by real-time PCR. Compared to conventional PCR-based methods, the real-time PCR is extremely rapid with results and more samples can be processed at one time.

Rapid Identification of Echinococcus granulosus and E. canadensis Using High-Resolution Melting (HRM) Analysis by Focusing on a Single Nucleotide Polymorphism.

PubMed

Safa, Ahmad Hosseini; Harandi, Majid Fasihi; Tajaddini, Mohammadhasan; Rostami-Nejad, Mohammad; Mohtashami-Pour, Mehdi; Pestehchian, Nader

2016-07-22

High-resolution melting (HRM) is a reliable and sensitive scanning method to detect variation in DNA sequences. We used this method to better understand the epidemiology and transmission of Echinococcus granulosus. We tested the use of HRM to discriminate the genotypes of E. granulosus and E. canadensis. One hundred forty-one hydatid cysts were collected from slaughtered animals in different parts of Isfahan-Iran in 2013. After DNA extraction, the mitochondrial cytochrome c oxidase subunit 1 (cox1) gene was amplified using PCR coupled with the HRM curve. The result of HRM analysis using partial the sequences of cox1 gene revealed that 93, 35, and 2 isolates were identified as G1, G3, and G6 genotypes, respectively. A single nucleotide polymorphism (SNP) was found in locus 9867 of the cox1 gene. This is a critical locus for the differentiation between the G6 and G7 genotypes. In the phylogenic tree, the sample with a SNP was located between the G6 and G7 genotypes, which suggest that this isolate has a G6/G7 genotype. The HRM analysis developed in the present study provides a powerful technique for molecular and epidemiological studies on echinococcosis in humans and animals.

Phase behavior and reactive transport of partial melt in heterogeneous mantle model

NASA Astrophysics Data System (ADS)

Jordan, J.; Hesse, M. A.

2013-12-01

The reactive transport of partial melt is the key process that leads to the chemical and physical differentiation of terrestrial planets and smaller celestial bodies. The essential role of the lithological heterogeneities during partial melting of the mantle is increasingly recognized. How far can enriched melts propagate while interacting with the ambient mantle? Can the melt flow emanating from a fertile heterogeneity be localized through a reactive infiltration feedback in a model without exogenous factors or contrived initial conditions? A full understanding of the role of heterogeneities requires reactive melt transport models that account for the phase behavior of major elements. Previous work on reactive transport in the mantle focuses on trace element partitioning; we present the first nonlinear chromatographic analysis of reactive melt transport in systems with binary solid solution. Our analysis shows that reactive melt transport in systems with binary solid solution leads to the formation of two separate reaction fronts: a slow melting/freezing front along which enthalpy change is dominant and a fast dissolution/precipitation front along which compositional changes are dominated by an ion-exchange process over enthalpy change. An intermediate state forms between these two fronts with a bulk-rock composition and enthalpy that are not necessarily bounded by the bulk-rock composition and enthalpy of either the enriched heterogeneity or the depleted ambient mantle. The formation of this intermediate state makes it difficult to anticipate the porosity changes and hence the stability of reaction fronts. Therefore, we develop a graphical representation for the solution that allows identification of the intermediate state by inspection, for all possible bulk-rock compositions and enthalpies of the heterogeneity and the ambient mantle. We apply the analysis to the partial melting of an enriched heterogeneity. This leads to the formation of moving precipitation front that followes a stationary melting front which creates low porosity intermediate states. Therefore, localization of the melt flow is not observed because the precipitation front is stable and the melting front is always stationary under these conditions. This analysis illustrates the counterintuitive behavior that can arise when the phase behavior is taken into account and is a first step to understanding reactive melt transport and the reactive constraints on channelization in partial melts. ¬¬

Asymmetric exponential amplification reaction on a toehold/biotin featured template: an ultrasensitive and specific strategy for isothermal microRNAs analysis

PubMed Central

Chen, Jun; Zhou, Xueqing; Ma, Yingjun; Lin, Xiulian; Dai, Zong; Zou, Xiaoyong

2016-01-01

The sensitive and specific analysis of microRNAs (miRNAs) without using a thermal cycler instrument is significant and would greatly facilitate biological research and disease diagnostics. Although exponential amplification reaction (EXPAR) is the most attractive strategy for the isothermal analysis of miRNAs, its intrinsic limitations of detection efficiency and inevitable non-specific amplification critically restrict its use in analytical sensitivity and specificity. Here, we present a novel asymmetric EXPAR based on a new biotin/toehold featured template. A biotin tag was used to reduce the melting temperature of the primer/template duplex at the 5′ terminus of the template, and a toehold exchange structure acted as a filter to suppress the non-specific trigger of EXPAR. The asymmetric EXPAR exhibited great improvements in amplification efficiency and specificity as well as a dramatic extension of dynamic range. The limit of detection for the let-7a analysis was decreased to 6.02 copies (0.01 zmol), and the dynamic range was extended to 10 orders of magnitude. The strategy enabled the sensitive and accurate analysis of let-7a miRNA in human cancer tissues with clearly better precision than both standard EXPAR and RT-qPCR. Asymmetric EXPAR is expected to have an important impact on the development of simple and rapid molecular diagnostic applications for short oligonucleotides. PMID:27257058

Testing Snow Melt Algorithms in High Relief Topography Using Calibrated Enhanced-Resolution Brightness Temperatures, Hunza River Basin, Pakistan

NASA Astrophysics Data System (ADS)

Ramage, J. M.; Brodzik, M. J.; Hardman, M.; Troy, T. J.

2017-12-01

Snow is a vital part of the terrestrial hydrological cycle, a crucial resource for people and ecosystems. In mountainous regions snow is extensive, variable, and challenging to document. Snow melt timing and duration are important factors affecting the transfer of snow mass to soil moisture and runoff. Passive microwave brightness temperature (Tb) changes at 36 and 18 GHz are a sensitive way to detect snow melt onset due to their sensitivity to the abrupt change in emissivity. They are widely used on large icefields and high latitude watersheds. The coarse resolution ( 25 km) of historically available data has precluded effective use in high relief, heterogeneous regions, and gaps between swaths also create temporal data gaps at lower latitudes. New enhanced resolution data products generated from a scatterometer image reconstruction for radiometer (rSIR) technique are available at the original frequencies. We use these Calibrated Enhanced-resolution Brightness (CETB) Temperatures Earth System Data Records (ESDR) to evaluate existing snow melt detection algorithms that have been used in other environments, including the cross polarized gradient ratio (XPGR) and the diurnal amplitude variations (DAV) approaches. We use the 36/37 GHz (3.125 km resolution) and 18/19 GHz (6.25 km resolution) vertically and horizontally polarized datasets from the Special Sensor Microwave Imager (SSM/I) and Advanced Microwave Radiometer for EOS (AMSR-E) and evaluate them for use in this high relief environment. The new data are used to assess glacier and snow melt records in the Hunza River Basin [area 13,000 sq. km, located at 36N, 74E], a tributary to the Upper Indus Basin, Pakistan. We compare the melt timing results visually and quantitatively to the corresponding EASE-Grid 2.0 25-km dataset, SRTM topography, and surface temperatures from station and reanalysis data. The new dataset is coarser than the topography, but is able to differentiate signals of melt/refreeze timing for different altitudes and land cover in this remote area with significant hazards from snow melt and glacier discharge. The improved spatial resolution, enhanced to 3-6 km, and retaining twice daily observations is a key improvement to fully analyze snowpack melt characteristics in remote mountainous regions.

Liquid-liquid phase separation and solidification behavior of Al55Bi36Cu9 monotectic alloy with different cooling rates

NASA Astrophysics Data System (ADS)

Bo, Lin; Li, Shanshan; Wang, Lin; Wu, Di; Zuo, Min; Zhao, Degang

2018-03-01

The cooling rate has a significant effect on the solidification behavior and microstructure of monotectic alloy. In this study, different cooling rate was designed through casting in the copper mold with different bore diameters. The effects of different cooling rate on the solidification behavior of Al55Bi36Cu9 (at.%) immiscible alloy have been investigated. The liquid-liquid phase separation of Al55Bi36Cu9 immiscible alloy melt was investigated by resistivity test. The solidification microstructure and phase analysis of Al55Bi36Cu9 immiscible alloy were performed by the SEM and XRD, respectively. The results showed that the liquid-liquid phase separation occurred in the solidification of Al55Bi36Cu9 monotectic melt from 917 °C to 653 °C. The monotectic temperature, liquid phase separation temperature and immiscibility zone of Al55Bi36Cu9 monotectic alloy was lower than those of Al-Bi binary monotectic alloy. The solidification morphology of Al55Bi36Cu9 monotectic alloy was very sensitive to the cooling rate. The Al/Bi core-shell structure formed when Al55Bi36Cu9 melt was cast in the copper mold with a 8 mm bore diameter.

A novel HRM assay for the simultaneous detection and differentiation of eight poxviruses of medical and veterinary importance

PubMed Central

Gelaye, Esayas; Mach, Lukas; Kolodziejek, Jolanta; Grabherr, Reingard; Loitsch, Angelika; Achenbach, Jenna E.; Nowotny, Norbert; Diallo, Adama; Lamien, Charles Euloge

2017-01-01

Poxviruses belonging to the Orthopoxvirus, Capripoxvirus and Parapoxvirus genera share common host species and create a challenge for diagnosis. Here, we developed a novel multiplex PCR method for the simultaneous detection and differentiation of eight poxviruses, belonging to three genera: cowpox virus (CPXV) and camelpox virus (CMLV) [genus Orthopoxvirus]; goatpox virus (GTPV), sheeppox virus (SPPV) and lumpy skin disease virus (LSDV) [genus Capripoxvirus]; orf virus (ORFV), pseudocowpox virus (PCPV) and bovine papular stomatitis virus (BPSV) [genus Parapoxvirus]. The assay is based on high-resolution melting curve analysis (HRMCA) of PCR amplicons produced using genus specific primer pairs and dsDNA binding dye. Differences in fragment size and GC content were used as discriminating power. The assay generated three well separated melting regions for each genus and provided additional intra-genus genotyping allowing the differentiation of the eight poxviruses based on amplicon melting temperature. Out of 271 poxviral DNA samples tested: seven CPXV, 25 CMLV, 42 GTPV, 20 SPPV, 120 LSDV, 33 ORFV, 20 PCPV and two BPSV were detected; two samples presented co-infection with CMLV and PCPV. The assay provides a rapid, sensitive, specific and cost-effective method for the detection of pox diseases in a broad range of animal species and humans. PMID:28216667

A hydrogeologic framework for characterizing summer streamflow sensitivity to climate warming in the Pacific Northwest, USA

NASA Astrophysics Data System (ADS)

Safeeq, M.; Grant, G. E.; Lewis, S. L.; Kramer, M. G.; Staab, B.

2014-09-01

Summer streamflows in the Pacific Northwest are largely derived from melting snow and groundwater discharge. As the climate warms, diminishing snowpack and earlier snowmelt will cause reductions in summer streamflow. Most regional-scale assessments of climate change impacts on streamflow use downscaled temperature and precipitation projections from general circulation models (GCMs) coupled with large-scale hydrologic models. Here we develop and apply an analytical hydrogeologic framework for characterizing summer streamflow sensitivity to a change in the timing and magnitude of recharge in a spatially explicit fashion. In particular, we incorporate the role of deep groundwater, which large-scale hydrologic models generally fail to capture, into streamflow sensitivity assessments. We validate our analytical streamflow sensitivities against two empirical measures of sensitivity derived using historical observations of temperature, precipitation, and streamflow from 217 watersheds. In general, empirically and analytically derived streamflow sensitivity values correspond. Although the selected watersheds cover a range of hydrologic regimes (e.g., rain-dominated, mixture of rain and snow, and snow-dominated), sensitivity validation was primarily driven by the snow-dominated watersheds, which are subjected to a wider range of change in recharge timing and magnitude as a result of increased temperature. Overall, two patterns emerge from this analysis: first, areas with high streamflow sensitivity also have higher summer streamflows as compared to low-sensitivity areas. Second, the level of sensitivity and spatial extent of highly sensitive areas diminishes over time as the summer progresses. Results of this analysis point to a robust, practical, and scalable approach that can help assess risk at the landscape scale, complement the downscaling approach, be applied to any climate scenario of interest, and provide a framework to assist land and water managers in adapting to an uncertain and potentially challenging future.

Severity of foraminal lumbar stenosis and the relation to clinical symptoms and response to periradicular infiltration-introduction of the "melting sign".

PubMed

Farshad, Mazda; Sutter, Reto; Hoch, Armando

2018-02-01

Nerve root compression causing symptomatic radiculopathy can occur within the intervertebral foramen. Sagittal magnetic resonance imaging (MRI) sequences are reliable in detection of nerve root contact to intraforaminal disc material, but a clinically relevant classification of degree of contact is lacking. This study aimed to investigate a potential relation of amount of contact between intraforaminal disc material and nerve root to clinical findings and response after periradicular corticosteroid infiltration. A post hoc analysis of a prospective cohort was carried out. Patients who underwent computed tomography (CT)-guided periradicular corticosteroid infiltration (L1-L5) at our institution (January 2014 to May 2016) were included. The medical records and radiographic imaging were reviewed. T2-weighted MRI of the lumbar spine of patients with single-level symptomatic radiculopathy with (responders, n=28) or without (non-responders, n=14) pain relief after periradicular infiltration with corticosteroids were measured and compared by two independent readers to determine the amount of intraforaminal nerve root contact with the intervertebral disc ("melting" of the T2-hypointense signal). Pain relief was defined with a pain level decrease of >50% on a visual analogue scale and lack of pain relief with a pain level decrease of <25%, respectively. The amount of T2-hypointensity melting of disc and nerve root was categorized to 0%, 1%-25%, and over 25%. Reader one identified 0% T2-melting in none of the responders, 1%-25% melting in 13 patients (46.4%), 26%-50% in 15 of the 28 patients (53.6%) with pain relief after periradicular corticosteroid infiltration (responders), with a mean amount of T2-melting of 5.9±2.1 mm, whereas the non-responder group had 0% T2-melting in 2 patients (14.3%), 1%-25% T2-melting in 11 patients (78.6%), and 26%-50% in 1 patient (7.1%), with a mean amount of T2-melting of 2.6±1.9 mm (p<.05). Reader two identified 0% T2-melting in none, 1%-25% T2-melting in 15 (53.6%) patients, and 26%-50% in 13 of the 28 responders (46.4%), with mean amount of 6.3±1.9 mm. In the non-responder group 0% T2-melting was seen in 3 patients (21.4%), 1%-25% T2-melting in 10 patients (71.4%), and 26%-50% in 1 patient (7.1%), with a mean amount of T2-melting of 2.7±1.9 mm (p<.05). None of the MRI showed T2-melting in over 50% of the circumference of the intraforaminal nerve root. A T2-melting of >25% had a high specificity of 93% but a sensitivity of 50%, thus a positive likelihood ratio of 7.5, to identify those with a pain relief of more than 50% after infiltration. The amount of T2-melting of disc material and nerve root on sagittal MRI (>25%) predicts the amount of pain relief by periradicular infiltration in patients with intraforaminal nerve root irritation. Copyright © 2017 Elsevier Inc. All rights reserved.

High-resolution melting (HRM) assay for the detection of recurrent BRCA1/BRCA2 germline mutations in Tunisian breast/ovarian cancer families.

PubMed

Riahi, Aouatef; Kharrat, Maher; Lariani, Imen; Chaabouni-Bouhamed, Habiba

2014-12-01

Germline deleterious mutations in the BRCA1/BRCA2 genes are associated with an increased risk for the development of breast and ovarian cancer. Given the large size of these genes the detection of such mutations represents a considerable technical challenge. Therefore, the development of cost-effective and rapid methods to identify these mutations became a necessity. High resolution melting analysis (HRM) is a rapid and efficient technique extensively employed as high-throughput mutation scanning method. The purpose of our study was to assess the specificity and sensitivity of HRM for BRCA1 and BRCA2 genes scanning. As a first step we estimate the ability of HRM for detection mutations in a set of 21 heterozygous samples harboring 8 different known BRCA1/BRCA2 variations, all samples had been preliminarily investigated by direct sequencing, and then we performed a blinded analysis by HRM in a set of 68 further sporadic samples of unknown genotype. All tested heterozygous BRCA1/BRCA2 variants were easily identified. However the HRM assay revealed further alteration that we initially had not searched (one unclassified variant). Furthermore, sequencing confirmed all the HRM detected mutations in the set of unknown samples, including homozygous changes, indicating that in this cohort, with the optimized assays, the mutations detections sensitivity and specificity were 100 %. HRM is a simple, rapid and efficient scanning method for known and unknown BRCA1/BRCA2 germline mutations. Consequently the method will allow for the economical screening of recurrent mutations in Tunisian population.

Effects of seasonal snow and climatic controls on spring and autumn phenology in Alpine forest regions

NASA Astrophysics Data System (ADS)

Xie, J.; Kneubühler, M.; Garonna, I.; Jong, R. D.; Schaepman, M. E.

2017-12-01

Seasonal accumulation and melt of snow in mountainous regions varies with meteorological factors and affects forest phenology in various ways. However, our knowledge about the relationship between seasonal snow and forest phenology - and particularly its topographical variation - is still limited and needs further investigation. We tested the relationship between a number of snow, meteorological and land surface phenology metrics (satellite-derived and gridded) in the forested regions of the Swiss Alps for the period of 2003-2014. Satellite-derived start of season and end of season metrics (SOS and EOS, respectively), in combination with snow accumulation (SA), snow cover melt date (SCMD), monthly maximum, mean and minimum temperature, monthly mean relative sunshine duration and precipitation were considered in our analysis. We calculated Spearman's rank correlation of interannual differences (Δ) of SOS and EOS with snow and meteorological metrics and examined the variation of these correlations with elevation (from 200 up to 2400 meter above sea level (m a.s.l.)). We found SOS to have a significant (p < 0.05) positive correlation with both SCMD (mean R=0.71, over 34.2% of all pixels) and SA (mean R=0.62, over 19.0% of all pixels). On the other hand, SOS showed a significant negative correlation with spring temperature and relative sunshine duration. EOS showed significant positive correlation with autumn temperature (mean R=0.70, over 30.4% of all pixels). Moreover, we found the forest phenology of the northern and eastern Swiss Alps to be more sensitive to seasonal snow but less sensitive to meteorological factors than in the southern and western Swiss Alps. The areas which are sensitive to seasonal snow and meteorological factors are more pronounced at higher elevations. We conclude that the effect of snow melt on spring phenology is of equal magnitude as spring temperature and relative sunshine duration. Autumn forest phenology is mainly influenced by autumn temperature. The effects of seasonal snow and climatic controls on spring and autumn phenology are more pronounced at higher than at lower elevations. We suggest that alpine forest ecosystems above 1500 m a.s.l. will therefore be particularly sensitive to future changes of seasonal snow and climate warming scenarios in the Swiss Alps.

Study of flow stress and spall strength of additively manufactured Ti-6-4 alloy

NASA Astrophysics Data System (ADS)

Cohen, Amitay; Paris, Vitaly; Yosef-Hai, Arnon; Gudinetsky, Eli; Tiferet, Eitan

2017-06-01

The use of additive manufacturing (AM) by Electron Beam Melting (EBM) or Selective Laser Melting (SLM) has extensively grown in the past few years. A major goal in AM is to manufacture materials with mechanical properties at least as good as traditionally manufactured materials. In this work we present results of planar impact tests and Split Hopkinson Pressure Bar tests (SHPB) on Ti-6-4 manufactured by EBM and SLM processes. Results of planar impact tests on SLM samples display slightly higher spall strength compared to EBM while the stress at Hugoniot elastic limit (HEL) is practically the same. Stress strain curves based on SHPB measurements at two different strain rates present similar plastic flow stresses for SLM and EBM processed Ti-6-4 alloy, while the flow stress is about 20% higher than reported for commercial reference material. The strain to failure of both materials shows considerable strain rate sensitivity. The results of post-mortem analysis of spall fracture will also be presented.

Modeling of the thermal physical process and study on the reliability of linear energy density for selective laser melting

NASA Astrophysics Data System (ADS)

Xiang, Zhaowei; Yin, Ming; Dong, Guanhua; Mei, Xiaoqin; Yin, Guofu

2018-06-01

A finite element model considering volume shrinkage with powder-to-dense process of powder layer in selective laser melting (SLM) is established. Comparison between models that consider and do not consider volume shrinkage or powder-to-dense process is carried out. Further, parametric analysis of laser power and scan speed is conducted and the reliability of linear energy density as a design parameter is investigated. The results show that the established model is an effective method and has better accuracy allowing for the temperature distribution, and the length and depth of molten pool. The maximum temperature is more sensitive to laser power than scan speed. The maximum heating rate and cooling rate increase with increasing scan speed at constant laser power and increase with increasing laser power at constant scan speed as well. The simulation results and experimental result reveal that linear energy density is not always reliable using as a design parameter in the SLM.

Rapid detection and differentiation of Clonorchis sinensis and Opisthorchis viverrini using real-time PCR and high resolution melting analysis.

PubMed

Cai, Xian-Quan; Yu, Hai-Qiong; Li, Rong; Yue, Qiao-Yun; Liu, Guo-Hua; Bai, Jian-Shan; Deng, Yan; Qiu, De-Yi; Zhu, Xing-Quan

2014-01-01

Clonorchis sinensis and Opisthorchis viverrini are both important fish-borne pathogens, causing serious public health problem in Asia. The present study developed an assay integrating real-time PCR and high resolution melting (HRM) analysis for the specific detection and rapid identification of C. sinensis and O. viverrini. Primers targeting COX1 gene were highly specific for these liver flukes, as evidenced by the negative amplification of closely related trematodes. Assays using genomic DNA extracted from the two flukes yielded specific amplification and their identity was confirmed by sequencing, having the accuracy of 100% in reference to conventional methods. The assay was proved to be highly sensitive with a detection limit below 1 pg of purified genomic DNA, 5 EPG, or 1 metacercaria of C. sinensis. Moreover, C. sinensis and O. viverrini were able to be differentiated by their HRM profiles. The method can reduce labor of microscopic examination and the contamination of agarose electrophoresis. Moreover, it can differentiate these two flukes which are difficult to be distinguished using other methods. The established method provides an alternative tool for rapid, simple, and duplex detection of C. sinensis and O. viverrini.

High throughput integrated thermal characterization with non-contact optical calorimetry

NASA Astrophysics Data System (ADS)

Hou, Sichao; Huo, Ruiqing; Su, Ming

2017-10-01

Commonly used thermal analysis tools such as calorimeter and thermal conductivity meter are separated instruments and limited by low throughput, where only one sample is examined each time. This work reports an infrared based optical calorimetry with its theoretical foundation, which is able to provide an integrated solution to characterize thermal properties of materials with high throughput. By taking time domain temperature information of spatially distributed samples, this method allows a single device (infrared camera) to determine the thermal properties of both phase change systems (melting temperature and latent heat of fusion) and non-phase change systems (thermal conductivity and heat capacity). This method further allows these thermal properties of multiple samples to be determined rapidly, remotely, and simultaneously. In this proof-of-concept experiment, the thermal properties of a panel of 16 samples including melting temperatures, latent heats of fusion, heat capacities, and thermal conductivities have been determined in 2 min with high accuracy. Given the high thermal, spatial, and temporal resolutions of the advanced infrared camera, this method has the potential to revolutionize the thermal characterization of materials by providing an integrated solution with high throughput, high sensitivity, and short analysis time.

Rapid Detection and Simultaneous Genotyping of Cronobacter spp. (formerly Enterobacter sakazakii) in Powdered Infant Formula Using Real-time PCR and High Resolution Melting (HRM) Analysis

PubMed Central

Cai, Xian-Quan; Yu, Hai-Qiong; Ruan, Zhou-Xi; Yang, Lei-Liang; Bai, Jian-Shan; Qiu, De-Yi; Jian, Zhi-Hua; Xiao, Yi-Qian; Yang, Jie-Yang; Le, Thanh Hoa; Zhu, Xing-Quan

2013-01-01

Cronobacter spp. is an emerging pathogen that causes meningitis, sepsis, bacteremia, and necrotizing enterocolitis in neonates and children. The present study developed an assay integrating real-time PCR and high resolution melting (HRM) analysis targeting the OmpA gene for the specific detection and rapid identification of Cronobacter spp. (formerly Enterobacter sakazakii) in powdered infant formula. Eleven Cronobacter field isolates and 25 reference strains were examined using one pair of primers, having the accuracy of 100% in reference to conventional methods. The assay was proved to be highly sensitive with a detection limit of 102 CFU/ml without pre-enrichment, and highly concordant (100%) when compared with ISO-IDF 22964 in 89 actual samples. The method performed for Cronobacter spp. detection was less than 24 h, drastically shortened, compared to several days using standard culturing method, it is probe-free and reduces a risk of PCR carryover. Moreover, all Cronobacter strains examined in this study were genotyped into two species according to their HRM profiles. The established method should provide a molecular tool for direct detection and simultaneous genotyping of Cronobacter spp. in powdered infant formula. PMID:23825624

Rapid detection and simultaneous genotyping of Cronobacter spp. (formerly Enterobacter sakazakii) in powdered infant formula using real-time PCR and high resolution melting (HRM) analysis.

PubMed

Cai, Xian-Quan; Yu, Hai-Qiong; Ruan, Zhou-Xi; Yang, Lei-Liang; Bai, Jian-Shan; Qiu, De-Yi; Jian, Zhi-Hua; Xiao, Yi-Qian; Yang, Jie-Yang; Le, Thanh Hoa; Zhu, Xing-Quan

2013-01-01

Cronobacter spp. is an emerging pathogen that causes meningitis, sepsis, bacteremia, and necrotizing enterocolitis in neonates and children. The present study developed an assay integrating real-time PCR and high resolution melting (HRM) analysis targeting the OmpA gene for the specific detection and rapid identification of Cronobacter spp. (formerly Enterobacter sakazakii) in powdered infant formula. Eleven Cronobacter field isolates and 25 reference strains were examined using one pair of primers, having the accuracy of 100% in reference to conventional methods. The assay was proved to be highly sensitive with a detection limit of 10(2) CFU/ml without pre-enrichment, and highly concordant (100%) when compared with ISO-IDF 22964 in 89 actual samples. The method performed for Cronobacter spp. detection was less than 24 h, drastically shortened, compared to several days using standard culturing method, it is probe-free and reduces a risk of PCR carryover. Moreover, all Cronobacter strains examined in this study were genotyped into two species according to their HRM profiles. The established method should provide a molecular tool for direct detection and simultaneous genotyping of Cronobacter spp. in powdered infant formula.

On mass transport in magmatic porosity waves

NASA Astrophysics Data System (ADS)

Jordan, J.; Hesse, M. A.; Rudge, J. F.

2017-12-01

Geochemical analyses of oceanic basalts indicate the mantle is lithologically heterogenous and subject to partial melting. Here we show that porosity waves-which arise naturally in models of buoyancy driven melt migration-transport mass and preserve geochemical signatures, at least partially. Prior studies of tracer transport in one dimensional porosity waves conclude that porosity waves do not transfer mass. However, it is well known that one-dimensional porosity waves are unstable in two and three dimensions and break up into sets of cylindrical or spherical porosity waves. We show that tracer transport in higher dimensional porosity waves is dramatically different than in one dimension. Lateral melt focusing into these high porosity regions leads to melt recirculating in the center of the wave. Melt focusing and recirculation are not resolvable in one dimension where no sustained transport is observed in numerical experiments of solitary porosity waves. In two and three dimensions, the recirculating melt is separated from the background melt-flow field by a circular or spherical dividing streamline and transported with the phase velocity of the porosity wave. The amount of melt focusing that occurs within any given porosity wave, and thus, the extent of the dividing streamline, and resultant volume of transported melt is extremely sensitive to the selection of porosity-permeability and porosity-rheology relationships. Therefore, we present a regime diagram spanning common parameterizations that illustrates the minimum amplitude and phase velocity required for a solitary porosity wave to transport mass as a function of material properties and common parameters used in magma dynamics and mid-ocean ridge models. The realization that solitary waves are capable of sustaining melt transport may require the reinterpretation of previous studies. For example, transport in porosity waves may allow melts that originated from the partial melting of fertile heterogeneities to retain their incompatible trace element signatures as they rise through the mantle. Porosity waves may also provide a mechanism for mixing melts derived from heterogeneities with ambient melts derived from different depths in the mantle.

Region of interest methylation analysis: a comparison of MSP with MS-HRM and direct BSP.

PubMed

Akika, Reem; Awada, Zainab; Mogharbil, Nahed; Zgheib, Nathalie K

2017-07-01

The aim of this study was to compare and contrast three DNA methylation methods of a specific region of interest (ROI): methylation-specific PCR (MSP), methylation-sensitive high resolution melting (MS-HRM) and direct bisulfite sequencing (BSP). The methylation of a CpG area in the promoter region of Estrogen receptor alpha (ESR1) was evaluated by these three methods with samples and standards of different methylation percentages. MSP data were neither reproducible nor sensitive, and the assay was not specific due to non-specific binding of primers. MS-HRM was highly reproducible and a step forward into categorizing the methylation status of the samples as percent ranges. Direct BSP was the most informative method regarding methylation percentage of each CpG site. Though not perfect, it was reproducible and sensitive. We recommend the use of either method depending on the research question and target amplicon, and provided that the designed primers and expected amplicons are within recommendations. If the research question targets a limited number of CpG sites and simple yes/no results are enough, MSP may be attempted. For short amplicons that are crowded with CpG sites and of single melting domain, MS-HRM may be the method of choice though it only indicates the overall methylation percentage of the entire amplicon. Although the assay is highly reproducible, being semi-quantitative makes it of lesser interest to study ROI methylation of samples with little methylation differences. Direct BSP is a step forward as it gives information about the methylation percentage at each CpG site.

Ice-shelf melting around Antarctica

NASA Astrophysics Data System (ADS)

Rignot, E.; Jacobs, S.

2008-12-01

The traditional view on the mass balance of Antarctic ice shelves is that they loose mass principally from iceberg calving with bottom melting a much lower contributing factor. Because ice shelves are now known to play a fundamental role in ice sheet evolution, it is important to re-evaluate their wastage processes from a circumpolar perspective using a combination of remote sensing techniques. We present area average rates deduced from grounding line discharge, snow accumulation, firn depth correction and ice shelf topography. We find that ice shelf melting accounts for roughly half of ice-shelf ablation, with a total melt water production of 1027 Gt/yr. The attrition fraction due to in-situ melting varies from 9 to 90 percent around Antarctica. High melt producers include the Ronne, Ross, Getz, Totten, Amery, George VI, Pine Island, Abbot, Dotson/Crosson, Shackleton, Thwaites and Moscow University Ice Shelves. Low producers include the Larsen C, Princess Astrid and Ragnhild coast, Fimbul, Brunt and Filchner. Correlation between melt water production and grounding line discharge is low (R2 = 0.65). Correlation with thermal ocean forcing from the ocean are highest in the northern parts of West Antarctica where regressions yield R2 of 0.93-0.97. Melt rates in the Amundsen Sea exhibit a quadratic sensitivity to thermal ocean forcing. We conclude that ice shelf melting plays a dominant role in ice shelf mass balance, with a potential to change rapidly in response to altered ocean heat transport onto the Antarctic continental shelf.

A 400-year ice core melt layer record of summertime warming in the Alaska Range

NASA Astrophysics Data System (ADS)

Winski, D.; Osterberg, E. C.; Kreutz, K. J.; Wake, C. P.; Ferris, D. G.; Campbell, S. W.; Baum, M.; Raudzens Bailey, A.; Birkel, S. D.; Introne, D.; Handley, M.

2017-12-01

Warming in high-elevation regions has socially relevant impacts on glacier mass balance, water resources, and sensitive alpine ecosystems, yet very few high-elevation temperature records exist from the middle or high latitudes. While many terrestrial paleoclimate records provide critical temperature records from low elevations over recent centuries, melt layers preserved in alpine glaciers present an opportunity to develop calibrated, annually-resolved temperature records from high elevations. We present a 400-year temperature record based on the melt-layer stratigraphy in two ice cores collected from Mt. Hunter in the Central Alaska Range. The ice core record shows a 60-fold increase in melt frequency and water equivalent melt thickness between the pre-industrial period (before 1850) and present day. We calibrate the melt record to summer temperatures based on local and regional weather station analyses, and find that the increase in melt production represents a summer warming of at least 2° C, exceeding rates of temperature increase at most low elevation sites in Alaska. The Mt. Hunter melt layer record is significantly (p<0.05) correlated with surface temperatures in the central tropical Pacific through a Rossby-wave like pattern that induces high temperatures over Alaska. Our results show that rapid alpine warming has taken place in the Alaska Range for at least a century, and that conditions in the tropical oceans contribute to this warming.

Fukushima Daiichi Unit 1 Ex-Vessel Prediction: Core-Concrete Interaction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Robb, Kevin R.; Farmer, Mitchell T.; Francis, Matthew W.

Lower head failure and corium-concrete interaction were predicted to occur at Fukushima Daiichi Unit 1 (1F1) by several different system-level code analyses, including MELCOR v2.1 and MAAP5. Although these codes capture a wide range of accident phenomena, they do not contain detailed models for ex-vessel core melt behavior. However, specialized codes exist for the analysis of ex-vessel melt spreading (e.g., MELTSPREAD) and long-term debris coolability (e.g., CORQUENCH). On this basis, in this paper an analysis was carried out to further evaluate ex-vessel behavior for 1F1 using MELTSPREAD and CORQUENCH. Best-estimate melt pour conditions predicted by MELCOR v2.1 and MAAP5 weremore » used as input. MELTSPREAD was then used to predict the spatially dependent melt conditions and extent of spreading during relocation from the vessel. The results of the MELTSPREAD analysis are reported in a companion paper. This information was used as input for the long-term debris coolability analysis with CORQUENCH. For the MELCOR-based melt pour scenario, CORQUENCH predicted the melt would readily cool within 2.5 h after the pour, and the sumps would experience limited ablation (approximately 18 cm) under water-flooded conditions. Finally, for the MAAP-based melt pour scenarios, CORQUENCH predicted that the melt would cool in approximately 22.5 h, and the sumps would experience approximately 65 cm of concrete ablation under water-flooded conditions.« less

Fukushima Daiichi Unit 1 Ex-Vessel Prediction: Core-Concrete Interaction

DOE PAGES

Robb, Kevin R.; Farmer, Mitchell T.; Francis, Matthew W.

2016-10-31

Lower head failure and corium-concrete interaction were predicted to occur at Fukushima Daiichi Unit 1 (1F1) by several different system-level code analyses, including MELCOR v2.1 and MAAP5. Although these codes capture a wide range of accident phenomena, they do not contain detailed models for ex-vessel core melt behavior. However, specialized codes exist for the analysis of ex-vessel melt spreading (e.g., MELTSPREAD) and long-term debris coolability (e.g., CORQUENCH). On this basis, in this paper an analysis was carried out to further evaluate ex-vessel behavior for 1F1 using MELTSPREAD and CORQUENCH. Best-estimate melt pour conditions predicted by MELCOR v2.1 and MAAP5 weremore » used as input. MELTSPREAD was then used to predict the spatially dependent melt conditions and extent of spreading during relocation from the vessel. The results of the MELTSPREAD analysis are reported in a companion paper. This information was used as input for the long-term debris coolability analysis with CORQUENCH. For the MELCOR-based melt pour scenario, CORQUENCH predicted the melt would readily cool within 2.5 h after the pour, and the sumps would experience limited ablation (approximately 18 cm) under water-flooded conditions. Finally, for the MAAP-based melt pour scenarios, CORQUENCH predicted that the melt would cool in approximately 22.5 h, and the sumps would experience approximately 65 cm of concrete ablation under water-flooded conditions.« less

Results from a lab study of melting sea ice

NASA Astrophysics Data System (ADS)

Wiese, M.; Griewank, P.; Notz, D.

2012-04-01

Sea-ice melting is a complex process which is not fully understood yet. In order to study sea-ice melt in detail we perform lab experiments in an approximately 2x0.7x1.2 m large tank in a cold room. We grow sea ice with different salinities at least 10 cm thick. Then we let the ice melt at different air temperatures and oceanic heat fluxes. During the melt period, we measure the evolution of ice thickness, internal temperature, salinity and surface temperature. We will present results from roughly five months of experiments. Topics will include the influence of bulk salinity on melt rates and the surface temperature. The effects of flushing on the salinity evolution and detailed thermal profiles will also be included. To investigate these processes we focus on the energy budget and the salinity evolution. These topics are linked since the thermodynamic properties of sea ice (heat capacity, heat conductivity and latent heat of fusion) are very sensitive to salinity variations. For example the heat capacity of sea ice increases greatly as the temperature approaches the melting point. This increase results in non-linear temperature profiles and enhances heat conduction into the ice. The salinity evolution during the growth phase has been investigated and measured in multiple studies over the last decades. In contrast there are no detailed lab measurements of melting ice available to quantify the effects of flushing melt water and ponding. This is partially due to the fact that the heterogeneity of melting sea ice makes it much more difficult to measure representative values.

Hydrologic sensitivity of headwater catchments to climate and landscape variability

NASA Astrophysics Data System (ADS)

Kelleher, Christa; Wagener, Thorsten; McGlynn, Brian; Nippgen, Fabian; Jencso, Kelsey

2013-04-01

Headwater streams cumulatively represent an extensive portion of the United States stream network, yet remain largely unmonitored and unmapped. As such, we have limited understanding of how these systems will respond to change, knowledge that is important for preserving these unique ecosystems, the services they provide, and the biodiversity they support. We compare responses across five adjacent headwater catchments located in Tenderfoot Creek Experimental Forest in Montana, USA, to understand how local differences may affect the sensitivity of headwaters to change. We utilize global, variance-based sensitivity analysis to understand which aspects of the physical system (e.g., vegetation, topography, geology) control the variability in hydrologic behavior across these basins, and how this varies as a function of time (and therefore climate). Basin fluxes and storages, including evapotranspiration, snow water equivalent and melt, soil moisture and streamflow, are simulated using the Distributed Hydrology-Vegetation-Soil Model (DHSVM). Sensitivity analysis is applied to quantify the importance of different physical parameters to the spatial and temporal variability of different water balance components, allowing us to map similarities and differences in these controls through space and time. Our results show how catchment influences on fluxes vary across seasons (thus providing insight into transferability of knowledge in time), and how they vary across catchments with different physical characteristics (providing insight into transferability in space).

Estimating the Triple-Point Isotope Effect and the Corresponding Uncertainties for Cryogenic Fixed Points

NASA Astrophysics Data System (ADS)

Tew, W. L.

2008-02-01

The sensitivities of melting temperatures to isotopic variations in monatomic and diatomic atmospheric gases using both theoretical and semi-empirical methods are estimated. The current state of knowledge of the vapor-pressure isotope effects (VPIE) and triple-point isotope effects (TPIE) is briefly summarized for the noble gases (except He), and for selected diatomic molecules including oxygen. An approximate expression is derived to estimate the relative shift in the melting temperature with isotopic substitution. In general, the magnitude of the effects diminishes with increasing molecular mass and increasing temperature. Knowledge of the VPIE, molar volumes, and heat of fusion are sufficient to estimate the temperature shift or isotopic sensitivity coefficient via the derived expression. The usefulness of this approach is demonstrated in the estimation of isotopic sensitivities and uncertainties for triple points of xenon and molecular oxygen for which few documented estimates were previously available. The calculated sensitivities from this study are considerably higher than previous estimates for Xe, and lower than other estimates in the case of oxygen. In both these cases, the predicted sensitivities are small and the resulting variations in triple point temperatures due to mass fractionation effects are less than 20 μK.

Basal melt rates of Filchner Ice Shelf, Antarctica

NASA Astrophysics Data System (ADS)

Humbert, A.; Nicholls, K. W.; Corr, H. F. J.; Steinhage, D.; Stewart, C.; Zeising, O.

2017-12-01

Thinning of ice shelves around Antarctica has been found to be partly driven by an increase in basal melt as a result of warmer waters entering the sub-ice shelf cavity. In-situ observations of basal melt rate are, however, sparse. A new robust and efficient phase sensitive radio echo sounder (pRES) allows to measure change in ice thickness and vertical strain at high accuracy, so that the contribution of basal melt to the change in thickness can be estimated. As modeling studies suggest that the cavity beneath Filchner Ice Shelf, Antarctica, might be prone to intrusion of warm water pulses within this century, we wished to derive a baseline dataset and an understanding of its present day spatial variability. Here we present results from pRES measurements over two field seasons, 2015/16-16/17, comprising 86 datasets over the southern Filchner Ice Shelf, covering an area of about 6500km2. The maximum melt rate is only slightly more than 1m/a, but the spatial distribution exhibits a complex pattern. For the purpose of testing variability of basal melt rates on small spatial scales, we performed 26 measurements over distances of about 1km, and show that the melt rates do not vary by more than 0.25m/a.

Novel, In-House, SYBR Green Based One-Step rRT-PCR: Rapid and Accurate Diagnosis of Crimean-Congo Hemorrhagic Fever Virus in Suspected Patients From Iran.

PubMed

Zahraei, Bentolhoda; Hashemzadeh, Mohammad Sadegh; Najarasl, Mohammad; Zahiriyeganeh, Samaneh; Tat, Mahdi; Metanat, Maliheh; Sepehri Rad, Nahid; Khansari-Nejad, Behzad; Zafari, Ehsan; Sharti, Mojtaba; Dorostkar, Ruhollah

2016-01-01

The Crimean-Congo hemorrhagic fever (CCHF) virus causes severe disease in humans, with a high mortality rate. Since, there is no approved vaccine or specific treatment for CCHF, an early and accurate diagnosis, as well as reliable surveillance, is essential for case management and patient improvement. For this research, our aim was to evaluate the application of a novel SYBR Green based one-step real-time reverse-transcriptase polymerase chain reaction (rRT-PCR) assay for the in-house diagnosis of the CCHF virus. In this experimental study, the highly conserved S-region sequence of the CCHF viral genome was first adapted from GenBank, and the specific primers targeting this region were designed. Then, the viral RNA was extracted from 75 serum samples from different patients in eastern Iran. The sensitivity and specificity of the primers were also evaluated in positive serum samples previously confirmed to have the CCHF virus, by this one-step rRT-PCR assay, as well as a DNA sequencing analysis. From a total of 75 suspected serum samples, 42 were confirmed to be positive for CCHF virus, with no false-positives detected by the sequencing results. After 40 amplification cycles, the melting curve analysis revealed a mean melting temperature (Tm) of 86.5 ± 0.6°C (quite different from those of the primer-dimers), and the positive samples showed only a small variation in the parameters. In all of the positive samples, the predicted length of 420 bp was confirmed by electrophoresis. Moreover, the sensitivity test showed that this assay can detect less than 20 copies of viral RNA per reaction. This study showed that this novel one-step rRT-PCR assay is a rapid, reliable, repeatable, specific, sensitive, and simple tool for the detection of the CCHF virus.

Lobate impact melt flows within the extended ejecta blanket of Pierazzo crater

NASA Astrophysics Data System (ADS)

Bray, Veronica J.; Atwood-Stone, Corwin; Neish, Catherine D.; Artemieva, Natalia A.; McEwen, Alfred S.; McElwaine, Jim N.

2018-02-01

Impact melt flows are observed within the continuous and discontinuous ejecta blanket of the 9 km lunar crater Pierazzo, from the crater rim to more than 40 km away from the center of the crater. Our mapping, fractal analysis, and thermal modeling suggest that melt can be emplaced ballistically and, upon landing, can become separated from solid ejecta to form the observed flow features. Our analysis is based on the identification of established melt morphology for these in-ejecta flows and supported by fractal analysis and thermal modeling. We computed the fractal dimension for the flow boundaries and found values of D = 1.05-1.17. These are consistent with terrestrial basaltic lava flows (D = 1.06-1.2) and established lunar impact melt flows (D = 1.06-1.18), but inconsistent with lunar dry granular flows (D = 1.31-1.34). Melt flows within discontinuous ejecta deposits are noted within just 1.5% of the mapping area, suggesting that the surface expression of impact melt in the extended ejecta around craters of this size is rare, most likely due to the efficient mixing of melts with solid ejecta and local target rocks. However, if the ejected fragments (both, molten and solid) are large enough, segregation of melt and its consequent flow is possible. As most of the flows mapped in this work occur on crater-facing slopes, the development of defined melt flows within ejecta deposits might be facilitated by high crater-facing topography restricting the flow of ejecta soon after it makes ground contact, limiting the quenching of molten ejecta through turbulent mixing with solid debris. Our study confirms the idea that impact melt can travel far beyond the continuous ejecta blanket, adding to the lunar regolith over an extensive area.

The Fatty Acid Composition of Phosphatidylglycerol and Sulfoquinovosyldiacylglycerol of Higher Plants in Relation to Chilling Sensitivity

PubMed Central

Kenrick, Janette R.; Bishop, David G.

1986-01-01

The fatty acid composition of phosphatidylglycerol and sulfoquinovosyldiacylglycerol has been measured in the leaves of 27 species of higher plants from six families whose members differed in their degrees of chilling sensitivity. The content of high melting point fatty acids (represented by the sum of hexadecanoic, trans-3-hexadecenoic and octadecanoic acids) in phosphatidylglycerols varied little between members of the same plant family and was not obviously related to the relative chilling sensitivity of members of that family. The saturated fatty acid content (hexadecanoic + octadecanoic acids) of sulfoquinovosyldiacylglycerols also appeared to be characteristic of a plant family, although some exceptions were found. In one case, (Carica papaya) the content of saturated fatty acids in sulfoquinovosyldiacylglycerol was sufficiently high to suggest that this lipid could undergo phase separations above 0°C. It is concluded that the content of high melting point fatty acids in leaf phosphatidylglycerol is not a direct indication of the chilling sensitivity of a plant, but rather may be a reflection of the genetic origin of that plant. PMID:16664962

Development of a multiplex real-time PCR assay for phylogenetic analysis of Uropathogenic Escherichia coli.

PubMed

Hasanpour, Mojtaba; Najafi, Akram

2017-06-01

Uropathogenic Escherichia coli (UPEC) is among major pathogens causing 80-90% of all episodes of urinary tract infections (UTIs). Recently, E. coli strains are divided into eight main phylogenetic groups including A, B1, B2, C, D, E, F, and clade I. This study was aimed to develop a rapid, sensitive, and specific multiplex real time PCR method capable of detecting phylogenetic groups of E. coli strains. This study was carried out on E. coli strains (isolated from the patient with UTI) in which the presence of all seven target genes had been confirmed in our previous phylogenetic study. An EvaGreen-based singleplex and multiplex real-time PCR with melting curve analysis was designed for simultaneous detection and differentiation of these genes. The primers were selected mainly based on the production of amplicons with melting temperatures (T m ) ranging from 82°C to 93°C and temperature difference of more than 1.5°C between each peak.The multiplex real-time PCR assays that have been developed in the present study were successful in detecting the eight main phylogenetic groups. Seven distinct melting peaks were discriminated, with Tm value of 93±0.8 for arpA, 89.2±0.1for chuA, 86.5±0.1 for yjaA, 82.3±0.2 for TspE4C2, 87.8±0.1for trpAgpC, 85.4±0.6 for arpAgpE genes, and 91±0.5 for the internal control. To our knowledge, this study is the first melting curve-based real-time PCR assay developed for simultaneous and discrete detection of these seven target genes. Our findings showed that this assay has the potential to be a rapid, reliable and cost-effective alternative for routine phylotyping of E. coli strains. Copyright © 2017 Elsevier B.V. All rights reserved.

Flow boundary conditions for chain-end adsorbing polymer blends.

PubMed

Zhou, Xin; Andrienko, Denis; Delle Site, Luigi; Kremer, Kurt

2005-09-08

Using the phenol-terminated polycarbonate blend as an example, we demonstrate that the hydrodynamic boundary conditions for a flow of an adsorbing polymer melt are extremely sensitive to the structure of the epitaxial layer. Under shear, the adsorbed parts (chain ends) of the polymer melt move along the equipotential lines of the surface potential whereas the adsorbed additives serve as the surface defects. In response to the increase of the number of the adsorbed additives the surface layer becomes thinner and solidifies. This results in a gradual transition from the slip to the no-slip boundary condition for the melt flow, with a nonmonotonic dependence of the slip length on the surface concentration of the adsorbed ends.

[Application of melting curve to analyze genotype of Duffy blood group antigen Fy-a/b].

PubMed

Chen, Xue; Zhou, Chang-Hua; Hong, Ying; Gong, Tian-Xiang

2012-12-01

This study was aimed to establish the real-time multiple-PCR with melting curve analysis for Duffy blood group Fy-a/b genotyping. According to the sequence of mRNA coding for β-actin and Fy-a/b, the primers of β-actin and Fy-a/b were synthesized. The real-time multiple-PCR with melting curve analysis for Fy-a/b genotyping was established. The Fy-a/b genotyping of 198 blood donors in Chinese Chengdu area has been investigated by melting curve analysis and PCR-SSP. The results showed that the results of Fy-a/b genotype by melting curve analysis were consistent with PCR-SSP. In all of 198 donors in Chinese Chengdu, 178 were Fy(a) (+) (89.9%), 19 were Fy(a) (+) Fy(b) (+) (9.6%), and 1 was Fy(b) (+) (0.5%). The gene frequency of Fy(a) was 0.947, while that of Fy(b) was 0.053. It is concluded that the genotyping method of Duffy blood group with melting curve analysis is established, which can be used as a high-throughput screening tool for Duffy blood group genotyping; and the Fy(a) genotype is the major of Duffy blood group of donors in Chinese Chengdu area.

MeltMan: Optimization, Evaluation, and Universal Application of a qPCR System Integrating the TaqMan qPCR and Melting Analysis into a Single Assay

PubMed Central

Nagy, Alexander; Černíková, Lenka; Vitásková, Eliška; Křivda, Vlastimil; Dán, Ádám; Dirbáková, Zuzana; Jiřincová, Helena; Procházka, Bohumír; Sedlák, Kamil; Havlíčková, Martina

2016-01-01

In the present work, we optimised and evaluated a qPCR system integrating 6-FAM (6-carboxyfluorescein)-labelled TaqMan probes and melting analysis using the SYTO 82 (S82) DNA binding dye in a single reaction. We investigated the influence of the S82 on various TaqMan and melting analysis parameters and defined its optimal concentration. In the next step, the method was evaluated in 36 different TaqMan assays with a total of 729 paired reactions using various DNA and RNA templates, including field specimens. In addition, the melting profiles of interest were correlated with the electrophoretic patterns. We proved that the S82 is fully compatible with the FAM-TaqMan system. Further, the advantages of this approach in routine diagnostic TaqMan qPCR were illustrated with practical examples. These included solving problems with flat or other atypical amplification curves or even false negativity as a result of probe binding failure. Our data clearly show that the integration of the TaqMan qPCR and melting analysis into a single assay provides an additional control option as well as the opportunity to perform more complex analyses, get more data from the reactions, and obtain analysis results with higher confidence. PMID:27031831

Detection and Characterization of Leishmania (Leishmania) and Leishmania (Viannia) by SYBR Green-Based Real-Time PCR and High Resolution Melt Analysis Targeting Kinetoplast Minicircle DNA

PubMed Central

Ceccarelli, Marcello; Galluzzi, Luca; Migliazzo, Antonella; Magnani, Mauro

2014-01-01

Leishmaniasis is a neglected disease with a broad clinical spectrum which includes asymptomatic infection. A thorough diagnosis, able to distinguish and quantify Leishmania parasites in a clinical sample, constitutes a key step in choosing an appropriate therapy, making an accurate prognosis and performing epidemiological studies. Several molecular techniques have been shown to be effective in the diagnosis of leishmaniasis. In particular, a number of PCR methods have been developed on various target DNA sequences including kinetoplast minicircle constant regions. The first aim of this study was to develop a SYBR green-based qPCR assay for Leishmania (Leishmania) infantum detection and quantification, using kinetoplast minicircle constant region as target. To this end, two assays were compared: the first used previously published primer pairs (qPCR1), whereas the second used a nested primer pairs generating a shorter PCR product (qPCR2). The second aim of this study was to evaluate the possibility to discriminate among subgenera Leishmania (Leishmania) and Leishmania (Viannia) using the qPCR2 assay followed by melting or High Resolution Melt (HRM) analysis. Both assays used in this study showed good sensitivity and specificity, and a good correlation with standard IFAT methods in 62 canine clinical samples. However, the qPCR2 assay allowed to discriminate between Leishmania (Leishmania) and Leishmania (Viannia) subgenera through melting or HRM analysis. In addition to developing assays, we investigated the number and genetic variability of kinetoplast minicircles in the Leishmania (L.) infantum WHO international reference strain (MHOM/TN/80/IPT1), highlighting the presence of minicircle subclasses and sequence heterogeneity. Specifically, the kinetoplast minicircle number per cell was estimated to be 26,566±1,192, while the subclass of minicircles amplifiable by qPCR2 was estimated to be 1,263±115. This heterogeneity, also observed in canine clinical samples, must be taken into account in quantitative PCR-based applications; however, it might also be used to differentiate between Leishmania subgenera. PMID:24551178

Visualization analysis of tiger-striped flow mark generation phenomena in injection molding

NASA Astrophysics Data System (ADS)

Owada, Shigeru; Yokoi, Hidetoshi

2016-03-01

The generation mechanism of tiger-striped flow marks of polypropylene (PP)/rubber/talc blends in injection molding was investigated by dynamic visualization analysis in a glass-inserted mold. The analysis revealed that the behavior of the melt flow front correlates with the flow mark generation. The cloudy part in the tiger-striped flow marks corresponded to the low transcription rate area of the melt diverging near the cavity wall, while the glossy part corresponded to the high transcription rate area of the melt converging toward the cavity wall side. The melt temperature at the high transcription rate area was slightly lower than that at the low transcription rate area. These phenomena resulted due to the difference in the temperature of the melt front that was caused by the asymmetric fountain flow. These results suggest the followings; At the moment when the melt is broken near the one side of cavity wall due to piling the extensional strains up to a certain level, the melt spurts out near the broken side. It results in generating asymmetric fountain flow temporarily to relax the extensional front surface, which moves toward the opposite side to form the high transcription area.

In-situ Pb isotope analysis of Fe-Ni-Cu sulphides by laser ablation multi-collector ICPMS: New insights into ore formation in the Sudbury impact melt sheet

NASA Astrophysics Data System (ADS)

Darling, J. R.; Storey, C. D.; Hawkesworth, C. J.; Lightfoot, P. C.

2012-12-01

Laser-ablation (LA) multi-collector inductively coupled plasma mass spectrometry (MC-ICPMS) is ideally suited to in situ determination of isotope ratios in sulphide minerals. Using samples of magmatic sulphide ore from the Sudbury impact structure, we test LA-MC-ICPMS analytical protocols that aim to meet a range of analytical challenges in the analysis of Pb isotopes. These include: potential matrix sensitive isotopic fractionation; interferences on Pb isotopes; low melting points of many sulphide minerals; the availability of standards. Magmatic sulphides of wide ranging mineralogy (pyrrhotite, pentlandite, chalcopyrite, pyrite and sphalerite) were analysed for Pb isotopic composition, using the silicate glass NIST SRM 610 as an external standard to correct for instrumental mass-fractionation. Despite matrix sensitive melting and re-deposition around ablation pits, several lines of evidence indicate that all analyses are accurate, within typical analytical uncertainties of 0.003-2% (2σ), and that the defined approach is insensitive to compositional diversity in sample matrix: (a) laser ablation and dissolution based measurements of sulphide powders are in agreement; (b) analyses from each sample define isochron ages within uncertainty of the known crystallization age (1850 Ma); (c) the results of sulphide measurements by laser ablation are consistent with age-corrected feldspar analyses from the same samples. The results have important implications for ore formation in Sudbury. The Pb isotope data regressions are consistent with age corrected feldspar analyses from each respective sample, which together with time integrated Th/U ratios that match whole rock values (3.1, 4.0 and 6.1 for the Worthington, Copper Cliff and Parkin Offset Dykes, respectively) indicate chemical equilibrium between the silicate and sulphide systems during ore formation. The sulphides within each respective sample have indistinguishable model initial Pb isotope ratios (207Pb/204Pbm), irrespective of mineralogy or texture, indicating a common origin for ores within each of three different Offset Dykes. Furthermore, variations between Offset Dykes (e.g., 207Pb/204Pbm = 15.514 ± 0.012, 15.399 ± 0.009 and 15.275 ± 0.003) show that the ores have differing crustal sources on previously unrecognized scales. Mass balance considerations, particularly for MgO, Ni and Cu, indicate that the spatial distribution of mafic target rocks played a significant role in controlling the mineralization potential in different parts of the melt sheet.

The nature and barium partitioning between immiscible melts - A comparison of experimental and natural systems with reference to lunar granite petrogenesis

NASA Technical Reports Server (NTRS)

Neal, C. R.; Taylor, L. A.

1989-01-01

Elemental partitioning between immiscible melts has been studied using experimental liquid-liquid Kds and those determined by analysis of immiscible glasses in basalt mesostases in order to investigate lunar granite petrogenesis. Experimental data show that Ba is partitioned into the basic immiscible melt, while probe analysis results show that Ba is partitioned into the granitic immiscible melt. It is concluded that lunar granite of significant size can only occur in a plutonic or deep hypabyssal environment.

Comparison of the meteorology and surface energy fluxes of debris-free and debris-covered glaciers in the southeastern Tibetan Plateau

NASA Astrophysics Data System (ADS)

Yang, W.

2017-12-01

Knowledge of the meteorology and energy fluxes of debris-free and debris-covered glaciers is important for understanding the varying response of glaciers to climate change. Field measurements at the debris-free Parlung No. 4 Glacier and the debris-covered 24K Glacier in the southeastern Tibetan Plateau were carried out to compare the meteorology and surface energy fluxes and to understand the factors controlling the melting process. The meteorological comparisons displayed temporally synchronous fluctuations in air temperature, relative humidity, incoming longwave radiation (Lin), but notable differences in precipitation, incoming shortwave radiation (Sin) and wind speed. Under the prevailing regional precipitation and debris conditions, more Lin (42 W/m2) was supplied from warmer and more humid air and more Sin (58 W/m2) was absorbed at the 24K Glacier. The relatively high energy supply led mainly to an increased energy output via turbulent heat fluxes and outgoing longwave radiation, rather than glacier melting beneath the thick debris. The sensitivity experiment showed that melting rates were sensitive to variations in energy supply with debris thicknesses of less than 10 cm. In contrast, energy supply to the ablation zone of the Parlung No. 4 Glacier mainly resulted in snow/ice melting, the magnitude of which was significantly influenced by the energy supplied by Sin and the sensible heat flux.

High resolution melting (HRM) analysis of DNA--its role and potential in food analysis.

PubMed

Druml, Barbara; Cichna-Markl, Margit

2014-09-01

DNA based methods play an increasing role in food safety control and food adulteration detection. Recent papers show that high resolution melting (HRM) analysis is an interesting approach. It involves amplification of the target of interest in the presence of a saturation dye by the polymerase chain reaction (PCR) and subsequent melting of the amplicons by gradually increasing the temperature. Since the melting profile depends on the GC content, length, sequence and strand complementarity of the product, HRM analysis is highly suitable for the detection of single-base variants and small insertions or deletions. The review gives an introduction into HRM analysis, covers important aspects in the development of an HRM analysis method and describes how HRM data are analysed and interpreted. Then we discuss the potential of HRM analysis based methods in food analysis, i.e. for the identification of closely related species and cultivars and the identification of pathogenic microorganisms. Copyright © 2014 Elsevier Ltd. All rights reserved.

Electron-Beam Atomic Spectroscopy for In Situ Measurements of Melt Composition for Refractory Metals: Analysis of Fundamental Physics and Plasma Models

NASA Astrophysics Data System (ADS)

Gasper, Paul Joseph; Apelian, Diran

2015-04-01

Electron-beam (EB) melting is used for the processing of refractory metals, such as Ta, Nb, Mo, and W. These metals have high value and are critical to many industries, including the semiconductor, aerospace, and nuclear industries. EB melting can also purify secondary feedstock, enabling the recovery and recycling of these materials. Currently, there is no method for measuring melt composition in situ during EB melting. Optical emission spectroscopy of the plasma generated by EB impact with vapor above the melt, a technique here termed electron-beam atomic spectroscopy, can be used to measure melt composition in situ, allowing for analysis of melt dynamics, facilitating improvement of EB melting processes and aiding recycling and recovery of these critical and high-value metals. This paper reviews the physics of the plasma generation by EB impact by characterizing the densities and energies of electrons, ions, and neutrals, and describing the interactions between them. Then several plasma models are introduced and their suitability to this application analyzed. Lastly, a potential method for calibration-free composition measurement is described and the challenges for implementation addressed.

Mechanical control of Renilla luciferase.

PubMed

Tseng, Chiao-Yu; Zocchi, Giovanni

2013-08-14

We report experiments where the activity of the enzyme luciferase from Renilla reniformis is controlled through a DNA spring attached to the enzyme. In the wake of previous work on kinases, these results establish that mechanical stress applied through the DNA springs is indeed a general method for the artificial control of enzymes, and for the quantitative study of mechano-chemical coupling in these molecules. We also show proof of concept of the luciferase construct as a sensitive molecular probe, detecting a specific DNA target sequence in an easy, one-step, homogeneous assay, as well as SNP detection without melting curve analysis.

Melt migration modeling in partially molten upper mantle

NASA Astrophysics Data System (ADS)

Ghods, Abdolreza

The objective of this thesis is to investigate the importance of melt migration in shaping major characteristics of geological features associated with the partial melting of the upper mantle, such as sea-floor spreading, continental flood basalts and rifting. The partial melting produces permeable partially molten rocks and a buoyant low viscosity melt. Melt migrates through the partially molten rocks, and transfers mass and heat. Due to its much faster velocity and appreciable buoyancy, melt migration has the potential to modify dynamics of the upwelling partially molten plumes. I develop a 2-D, two-phase flow model and apply it to investigate effects of melt migration on the dynamics and melt generation of upwelling mantle plumes and focusing of melt migration beneath mid-ocean ridges. Melt migration changes distribution of the melt-retention buoyancy force and therefore affects the dynamics of the upwelling plume. This is investigated by modeling a plume with a constant initial melt of 10% where no further melting is considered. Melt migration polarizes melt-retention buoyancy force into high and low melt fraction regions at the top and bottom portions of the plume and therefore results in formation of a more slender and faster upwelling plume. Allowing the plume to melt as it ascends through the upper mantle also produces a slender and faster plume. It is shown that melt produced by decompressional melting of the plume migrates to the upper horizons of the plume, increases the upwelling velocity and thus, the volume of melt generated by the plume. Melt migration produces a plume which lacks the mushroom shape observed for the plume models without melt migration. Melt migration forms a high melt fraction layer beneath the sloping base of the impermeable oceanic lithosphere. Using realistic conditions of melting, freezing and melt extraction, I examine whether the high melt fraction layer is able to focus melt from a wide partial melting zone to a narrow region beneath the observed neo-volcanic zone. My models consist of three parts; lithosphere, asthenosphere and a melt extraction region. It is shown that melt migrates vertically within the asthenosphere, and forms a high melt fraction layer beneath the sloping base of the impermeable lithosphere. Within the sloping high melt fraction layer, melt migrates laterally towards the ridge. In order to simulate melt migration via crustal fractures and cracks, melt is extracted from a melt extraction region extending to the base of the crust. Performance of the melt focusing mechanism is not significantly sensitive to the size of melt extraction region, melt extraction threshold and spreading rate. In all of the models, about half of the total melt production freezes beneath the cooling base of the lithosphere, and the rest is effectively focused towards the ridge and forms the crust. To meet the computational demand for a precise tracing of the deforming upwelling plume and including the chemical buoyancy of the partially molten zone in my models, a new numerical method is developed to solve the related pure advection equations. The numerical method is based on Second Moment numerical method of Egan and Mahoney [1972] which is improved to maintain a high numerical accuracy in shear and rotational flow fields. In comparison with previous numerical methods, my numerical method is a cost-effective, non-diffusive and shape preserving method, and it can also be used to trace a deforming body in compressible flow fields.

Modeling ice front Dynamics of Northwest Greenland in response to ocean thermal forcing, using ISSM and OMG data

NASA Astrophysics Data System (ADS)

Morlighem, M.; Bondzio, J. H.; Seroussi, H. L.; Wood, M.; Rignot, E. J.

2016-12-01

Glacier-front dynamics is an important control on Greenland's ice mass balance. Warmer ocean waters trigger ice-front retreats of marine-terminating glaciers, and the corresponding loss in resistive stress leads to glacier acceleration and thinning. Here, we quantify the sensitivity and vulnerability of marine-terminating glaciers along the Northwest coast of Greenland (from 73°N to 7°N) to ocean-induced melt using the Ice Sheet System Model (ISSM) and bathymetry data collected by NASA's Occreans Melting Greenland (OMG). We first combine OMG bathymetry data with ice velocity from satellites and ice thickness from airborne radars using a mass conservation approach on land to produce ice thickness and bed elevation mapping across the ice-ocean boundary that are more precise and reliable than ever before. Using this new map, we then develop a plan-view model of this region that includes a level set based moving boundary capability, a parameterized ocean-induced melt and a calving law based on a Von Mises criterion. We find that some glaciers, such as Dietrichson Gletscher or Alison Gletscher, are sensitive to small increases in ocean-induced melt, while others, such as Steenstrup Gletscher or Qeqertarsuup Sermia, are very difficult to destabilize, even with a quadrupling of the melt. Under the most intense melt experiment of 12 m/day in the summer, we find that Hayes Gletscher retreats by more than 50 km inland into a deep trough and its velocity increases by a factor of 10 over only 15 years. The model suggests that ice-ocean interactions are the triggering mechanism of glacier retreat, but the bed controls its magnitude. This work was performed at the University of California Irvine under a contract with the National Aeronautics and Space Administration, Cryospheric Sciences Program, grant NNX15AD55G.

Detection and discrimination of members of the family Luteoviridae by real-time PCR and SYBR® GreenER™ melting curve analysis.

PubMed

Chomic, Anastasija; Winder, Louise; Armstrong, Karen F; Pearson, Michael N; Hampton, John G

2011-01-01

This study investigated the suitability of a two step real-time RT-PCR melting curve analysis as a tool for the detection and discrimination of nine species in the plant virus family Luteoviridae, being Soybean dwarf virus [SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus [BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus [CABYV], Potato leafroll virus [PLRV] and Turnip yellows virus [TuYV]. Melting temperature and shape of the melting peak were analysed for 68 bp and 148 bp coat protein gene amplicons using SYBR® GreenER™ fluorescent dye. Specific melting peaks with unique melting temperature were observed for the various species of the family Luteoviridae using the 68 bp amplicon, but not with the 148 bp amplicon. Due to the high variability of sequences for some members of this family, different melting temperatures were also observed between different isolates of the species CYDV-RPV and TuYV. Nevertheless, discrimination between species was achieved for SbDV, BLRV, BChV, BMYV, CABYV and either PLRV or BWYV. Melting curve analysis, in this study, is a faster and more discriminatory alternative to gel electrophoresis of end-point PCR products for the detection of Luteoviridae infection. Copyright © 2010 Elsevier B.V. All rights reserved.

Preparation and thermoluminescent dosimetry features of high sensitivity LiF:Mg,Ce phosphor

NASA Astrophysics Data System (ADS)

Shoushtari, M. K.; Zahedifar, M.; Sadeghi, E.

2018-04-01

Thermoluminescence (TL) kinetics and dosimetry features of newly produced LiF doped with Mg and Ce were investigated. Different contents of Mg (0-1 mol%) and Ce (0-2 mol%) were introduced in host material by melting method. The most TL sensitivity of the fabricated phosphor was obtained at 0.7 and 0.05 mol% concentrations of Mg and Ce impurities, respectively. The optimum pre-irradiation annealing regime of the synthesized LiF-based material was found at 350 °C for 10 min. Kinetic parameters of LiF:Mg,Ce dosimeter were obtained using different methods of computerized glow curve deconvolution (CGCD), initial rise (IR) and isothermal decay (ID). A good conformity are observed between the results obtained from different kinetic analysis methods. Other TL features such as fading, dose response and reusability were also examined.

Development of synthetic nuclear melt glass for forensic analysis.

PubMed

Molgaard, Joshua J; Auxier, John D; Giminaro, Andrew V; Oldham, C J; Cook, Matthew T; Young, Stephen A; Hall, Howard L

A method for producing synthetic debris similar to the melt glass produced by nuclear surface testing is demonstrated. Melt glass from the first nuclear weapon test (commonly referred to as trinitite) is used as the benchmark for this study. These surrogates can be used to simulate a variety of scenarios and will serve as a tool for developing and validating forensic analysis methods.

The WAIS Melt Monitor: An automated ice core melting system for meltwater sample handling and the collection of high resolution microparticle size distribution data

NASA Astrophysics Data System (ADS)

Breton, D. J.; Koffman, B. G.; Kreutz, K. J.; Hamilton, G. S.

2010-12-01

Paleoclimate data are often extracted from ice cores by careful geochemical analysis of meltwater samples. The analysis of the microparticles found in ice cores can also yield unique clues about atmospheric dust loading and transport, dust provenance and past environmental conditions. Determination of microparticle concentration, size distribution and chemical makeup as a function of depth is especially difficult because the particle size measurement either consumes or contaminates the meltwater, preventing further geochemical analysis. Here we describe a microcontroller-based ice core melting system which allows the collection of separate microparticle and chemistry samples from the same depth intervals in the ice core, while logging and accurately depth-tagging real-time electrical conductivity and particle size distribution data. This system was designed specifically to support microparticle analysis of the WAIS Divide WDC06A deep ice core, but many of the subsystems are applicable to more general ice core melting operations. Major system components include: a rotary encoder to measure ice core melt displacement with 0.1 millimeter accuracy, a meltwater tracking system to assign core depths to conductivity, particle and sample vial data, an optical debubbler level control system to protect the Abakus laser particle counter from damage due to air bubbles, a Rabbit 3700 microcontroller which communicates with a host PC, collects encoder and optical sensor data and autonomously operates Gilson peristaltic pumps and fraction collectors to provide automatic sample handling, melt monitor control software operating on a standard PC allowing the user to control and view the status of the system, data logging software operating on the same PC to collect data from the melting, electrical conductivity and microparticle measurement systems. Because microparticle samples can easily be contaminated, we use optical air bubble sensors and high resolution ice core density profiles to guide the melting process. The combination of these data allow us to analyze melt head performance, minimize outer-to-inner fraction contamination and avoid melt head flooding. The WAIS Melt Monitor system allows the collection of real-time, sub-annual microparticle and electrical conductivity data while producing and storing enough sample for traditional Coulter-Counter particle measurements as well long term acid leaching of bioactive metals (e.g., Fe, Co, Cd, Cu, Zn) prior to chemical analysis.

Prediction of sensitivity to warfarin based on VKORC1 and CYP2C9 polymorphisms in patients from different places in Colombia.

PubMed

Cifuentes, Ricardo A; Murillo-Rojas, Juan; Avella-Vargas, Esperanza

2016-03-03

In the search to prevent hemorrhages associated with anticoagulant therapy, a major goal is to validate predictors of sensitivity to warfarin. However, previous studies in Colombia that included polymorphisms in the VKORC1 and CYP2C9 genes as predictors reported different algorithm performances to explain dose variations, and did not evaluate the prediction of sensitivity to warfarin.  To determine the accuracy of the pharmacogenetic analysis, which includes the CYP2C9 *2 and *3 and VKORC1 1639G>A polymorphisms in predicting patients' sensitivity to warfarin at the Hospital Militar Central, a reference center for patients born in different parts of Colombia.  Demographic and clinical data were obtained from 130 patients with stable doses of warfarin for more than two months. Next, their genotypes were obtained through a melting curve analysis. After verifying the Hardy-Weinberg equilibrium of the genotypes from the polymorphisms, a statistical analysis was done, which included multivariate and predictive approaches.  A pharmacogenetic model that explained 52.8% of dose variation (p<0.001) was built, which was only 4% above the performance resulting from the same data using the International Warfarin Pharmacogenetics Consortium algorithm. The model predicting the sensitivity achieved an accuracy of 77.8% and included age (p=0.003), polymorphisms *2 and *3 (p=0.002) and polymorphism 1639G>A (p<0.001) as predictors.  These results in a mixed population support the prediction of sensitivity to warfarin based on polymorphisms in VKORC1 and CYP2C9 as a valid approach in Colombian patients.

Modeling of subaqueous melting in Petermann Fjord, Northwestern Greenland using an ocean general circulation model

NASA Astrophysics Data System (ADS)

Cai, C.; Rignot, E. J.; Xu, Y.; An, L.; Tinto, K. J.; van den Broeke, M. R.

2014-12-01

Basal melting of the floating tongue of Petermann Glacier, in northwestern Greenland is by far the largest process of mass ablation. Melting of the floating tongue is controlled by the buoyancy of the melt water plume, the pressure-dependence of the melting point of sea ice, and the mixing of warm subsurface water with fresh buoyant subglacial discharge. In prior simulations of this melting process, the role of subglacial discharge has been neglected because in similar configurations (floating ice shelves) in the Antarctic, surface runoff is negligible; this is however not true in Greenland. Here, we use the Mass Institute of Technology general circulation model (MITgcm) at a high spatial resolution (10 m x 10 m) to simulate the melting process of the ice shelf in 2-D. The model is constrained by ice shelf bathymetry and ice thickness (refined model in the immediate vicinity of the grounding line) from NASA Operation IceBridge (2011), ocean temperature/salinity data from Johnson et al. (2011), ocean tide height and current from the Arctic Ocean Tidal Inverse Model (AOTIM-5) by Padman and Erofeeva (2004) and subglacial discharge at the grounding line calculated by the hydrostatic potential of the ice from estimated products of the Regional Atmospheric Climate Model (RACMO) of Royal Netherlands Meteorological Institute (KNMI). We compare the results obtained in winter (no runoff) with summer, and the sensitivity of the results to thermal forcing from the ocean, and to the variation of tide height and current, and to the magnitude of subglacial runoff. We conclude on the impact of the ocean and surface melting on the melting regime of the floating ice tongue of Petermann. The basal melt rate increases ~20% with summer surface runoff. This work is performed under a contract with NASA Cryosphere Program.

The effect of under-ice melt ponds on their surroundings in the Arctic

NASA Astrophysics Data System (ADS)

Feltham, D. L.; Smith, N.; Flocco, D.

2016-12-01

In the summer months, melt water from the surface of the Arctic sea ice can percolate down through the ice and flow out of its base. This water is relatively warm and fresh compared to the ocean water beneath it, and so it floats between the ice and the oceanic mixed layer, forming pools of melt water called under-ice melt ponds. Sheets of ice, known as false bottoms, can subsequently form via double diffusion processes at the under-ice melt pond interface with the ocean, trapping the pond against the ice and completely isolating it from the ocean below. This has an insulating effect on the parent sea ice above the trapped pond, altering its rate of basal ablation. A one-dimensional, thermodynamic model of Arctic sea ice has been adapted to study the evolution of under-ice melt ponds and false bottoms over time. Comparing simulations of sea ice evolution with and without an under-ice melt pond provides a measure of how an under-ice melt pond affects the mass balance of the sea ice above it. Sensitivity studies testing the response of the model to a range of uncertain parameters have been performed, revealing some interesting implications of under-ice ponds during their life cycle. By changing the rate of basal ablation of the parent sea ice, and so the flux of fresh water and salt into the ocean, under-ice melt ponds affect the properties of the mixed layer beneath the sea ice. Our model of under-ice melt pond refreezing has been coupled to a simple oceanic mixed layer model to determine the effect on mixed layer depth, salinity and temperature.

Inter-comparison of hydro-climatic regimes across northern catchments: snychronicity, resistance and resilience

Treesearch

Sean K. Carey; Doerthe Tetzlaff; Jan Seibert; Chris Soulsby; Jim Buttle; Hjalmar Laudon; Jeff McDonnell; Kevin McGuire; Daniel Caissie; Jamie Shanley; Mike Kennedy; Kevin Devito; John W. Pomeroy

2010-01-01

The higher mid-latitudes of the Northern Hemisphere are particularly sensitive to climate change as small differences in temperature determine frozen ground status, precipitation phase, and the magnitude and timing of snow accumulation and melt. An international inter-catchment comparison program, North-Watch, seeks to improve our understanding of the sensitivity of...

Design, fabrication, and evaluation of a partially melted ice particle cloud facility

NASA Astrophysics Data System (ADS)

Soltis, Jared T.

High altitude ice crystal clouds created by highly convective storm cells are dangerous to jet transport aircraft because the crystals are ingested into the compressor section, partially melt, accrete, and cause roll back or flame out. Current facilities to test engine particle icing are not ideal for fundamental mixed-phase ice accretion experiments or do not generate frozen droplet clouds under representative conditions. The goal of this research was to develop a novel facility capable of testing fundamental partially melted ice particle icing physics and to collect ice accretion data related to mixed-phase ice accretion. The Penn State Icing Tunnel (PSIT) has been designed and fabricated to conduct partially melted ice particle cloud accretion. The PSIT generated a cloud with air assisted atomizing nozzles. The water droplets cool from the 60psi pressure drop as the water exited the nozzle and fully glaciate while flowing in the -11.0°C tunnel air flow. The glaciated cloud flowed through a duct in the center of the tunnel where hot air was introduced. The temperature of the duct was regulated from 3.3°C to 24°C which melted particle the frozen particle from 0% to 90%. The partially melted particle cloud impinged on a temperature controlled flat plate. Ice accretion data was taken for a range of duct temperature from 3.3°C to 24°C and plate temperature from -4.5°C to 7.0°C. The particle median volumetric diameter was 23mum, the total water content was 4.5 g/m 3, the specific humidity was 1.12g/kg, and the wet bulb temperature ranged from 1.0°C to 7.0°C depending on the duct temperature. The boundaries between ice particle bounce off, ice accretion, and water run off were determined. When the particle were totally frozen and the plate surface was below freezing, the ice particle bounced off as expected. Ice accretion was seen for all percent melts tested, but the plate temperature boundary between water runoff and ice accretion increased from 0°C at 8% melt to 3°C at 90%. There were two types of ice accretion with a transition zone in between. The first type of ice was opaque in color and had a rough surface. This ice occurred roughly from 6.0°C to 12.0°C duct temperatures (8% to 50% melt). The qualitative characteristics of the ice were produced from the low water content in the cloud. The water that was available froze instantly and trapped ice particle. Duct temperatures greater than 17.5°C (80% melt) produced ice that was clear and smooth. The water in the surface did not freeze instantly due to the high water content creating a water film that froze. A mixed-phase cloud dynamics model from NASA Glenn was used to estimate the percent melt of the cloud exiting the duct. There was no way to validate the model by directly measuring the percent melt of the cloud, so single particle melt experiments were conducted and compared to the model. A 0.05g/L solution of rhodamine b was sprayed into a levitator and droplets formed at the nodes of the wave. A 532nm green laser was used to illuminate the dye, and the water emitted orange 593nm light given the luminescent properties of the ink. The emitted light intensity was recorded, and a linear relationship between the light intensity of ice to the light intensity of water was used to determine the percent melt of a droplet. The droplets were frozen with a cold flow of nitrogen gas via a liquid nitrogen heat exchanger. The droplets melted under natural convection when the cold nitrogen was shut off. Fifteen cases were compared with droplet diameters ranging from 324mum to 1112mum, air temperatures from 16°C to 31°C, and relative humidities from 41% to 100%. The average discrepancy between predictions and results for the cases that melted slower than ten seconds was 13% while the cases that melted faster than 10 second had 64% discrepancy between the model and experiment. To explain the discrepancy between the experiment and model, sensitivity studies of the model were conducted. It was seen that the melt time from the model was most sensitive to ambient temperature (1s/°C). It was also seen that the thermistors used in the experiment were accurate to 0.7°C. Transient effects of the rhodamine b caused an overshoot in light intensity, making it difficult to accurately determine the melting stop time. These factors led to the difference in melt time between the model and experiments. A 2.7s difference between model and experiments was deemed to be a successful correlation between predictions and experimental results given the model sensitivity to temperature, the difficulty in measuring temperatures at the position of the droplet, and the transient characteristics of rhodamine b.

Uncertainty Quantification for Ice Sheet Science and Sea Level Projections

NASA Astrophysics Data System (ADS)

Boening, C.; Schlegel, N.; Limonadi, D.; Schodlok, M.; Seroussi, H. L.; Larour, E. Y.; Watkins, M. M.

2017-12-01

In order to better quantify uncertainties in global mean sea level rise projections and in particular upper bounds, we aim at systematically evaluating the contributions from ice sheets and potential for extreme sea level rise due to sudden ice mass loss. Here, we take advantage of established uncertainty quantification tools embedded within the Ice Sheet System Model (ISSM) as well as sensitivities to ice/ocean interactions using melt rates and melt potential derived from MITgcm/ECCO2. With the use of these tools, we conduct Monte-Carlo style sampling experiments on forward simulations of the Antarctic ice sheet, by varying internal parameters and boundary conditions of the system over both extreme and credible worst-case ranges. Uncertainty bounds for climate forcing are informed by CMIP5 ensemble precipitation and ice melt estimates for year 2100, and uncertainty bounds for ocean melt rates are derived from a suite of regional sensitivity experiments using MITgcm. Resulting statistics allow us to assess how regional uncertainty in various parameters affect model estimates of century-scale sea level rise projections. The results inform efforts to a) isolate the processes and inputs that are most responsible for determining ice sheet contribution to sea level; b) redefine uncertainty brackets for century-scale projections; and c) provide a prioritized list of measurements, along with quantitative information on spatial and temporal resolution, required for reducing uncertainty in future sea level rise projections. Results indicate that ice sheet mass loss is dependent on the spatial resolution of key boundary conditions - such as bedrock topography and melt rates at the ice-ocean interface. This work is performed at and supported by the California Institute of Technology's Jet Propulsion Laboratory. Supercomputing time is also supported through a contract with the National Aeronautics and Space Administration's Cryosphere program.

MEA/A-1 experiment 81F01 conducted on STS-7 flight, June 1983. Containerless processing of glass forming melts

NASA Technical Reports Server (NTRS)

Day, D. E.; Ray, C. S.

1983-01-01

The space processing of containerless, glassforming melts on board the space shuttle flight STS-7 is investigated. Objectives include; (1) obtain quantitative evidence for the supression of heterogeneous nucleation/crystallization, (2) study melt homogenization without gravity driven convection, (3) procedural development for bubble free, high purity homogeneous melts inmicro-g, (4) comparative analysis of melts on Earth and in micro g, and (5) assess the apparatus for processing multicomponent, glass forming melts in a low gravity environment.

Layered graphene-mica substrates induce melting of DNA origami

NASA Astrophysics Data System (ADS)

Green, Nathaniel S.; Pham, Phi H. Q.; Crow, Daniel T.; Burke, Peter J.; Norton, Michael L.

2018-04-01

Monolayer graphene supported on mica substrates induce melting of cross-shaped DNA origami. This behavior can be contrasted with the case of origami on graphene on graphite, where an expansion or partially re-organized structure is observed. On mica, only well-formed structures are observed. Comparison of the morphological differences observed for these probes after adsorption on these substrates provides insights into the sensitivity of DNA based nanostructures to the properties of the graphene monolayer, as modified by its substrate.

Silicon web process development

NASA Technical Reports Server (NTRS)

Duncan, C. S.; Seidensticker, R. G.; Mchugh, J. P.; Hill, F. E.; Skutch, M. E.; Driggers, J. M.; Hopkins, R. H.

1980-01-01

A barrier crucible design which consistently maintains melt stability over long periods of time was successfully tested and used in long growth runs. The pellet feeder for melt replenishment was operated continuously for growth runs of up to 17 hours. The liquid level sensor comprising a laser/sensor system was operated, performed well, and meets the requirements for maintaining liquid level height during growth and melt replenishment. An automated feedback loop connecting the feed mechanism and the liquid level sensing system was designed and constructed and operated successfully for 3.5 hours demonstrating the feasibility of semi-automated dendritic web growth. The sensitivity of the cost of sheet, to variations in capital equipment cost and recycling dendrites was calculated and it was shown that these factors have relatively little impact on sheet cost. Dendrites from web which had gone all the way through the solar cell fabrication process, when melted and grown into web, produce crystals which show no degradation in cell efficiency. Material quality remains high and cells made from web grown at the start, during, and the end of a run from a replenished melt show comparable efficiencies.

Long-Term Stability of WC-C Peritectic Fixed Point

NASA Astrophysics Data System (ADS)

Khlevnoy, B. B.; Grigoryeva, I. A.

2015-03-01

The tungsten carbide-carbon peritectic (WC-C) melting transition is an attractive high-temperature fixed point with a temperature of . Earlier investigations showed high repeatability, small melting range, low sensitivity to impurities, and robustness of WC-C that makes it a prospective candidate for the highest fixed point of the temperature scale. This paper presents further study of the fixed point, namely the investigation of the long-term stability of the WC-C melting temperature. For this purpose, a new WC-C cell of the blackbody type was built using tungsten powder of 99.999 % purity. The stability of the cell was investigated during the cell aging for 50 h at the cell working temperature that tooks 140 melting/freezing cycles. The method of investigation was based on the comparison of the WC-C tested cell with a reference Re-C fixed-point cell that reduces an influence of the probable instability of a radiation thermometer. It was shown that after the aging period, the deviation of the WC-C cell melting temperature was with an uncertainty of.

Theoretical analysis of heat flow in horizontal ribbon growth from a melt. [silicon metal

NASA Technical Reports Server (NTRS)

Zoutendyk, J. A.

1978-01-01

A theoretical heat flow analysis for horizontalribbon growth is presented. Equations are derived relating pull speed, ribbon thickness, thermal gradient in the melt, and melt temperature for limiting cases of heat removal by radiation only and isothermal heat removal from the solid surface over the melt. Geometrical cross sections of the growth zone are shown to be triangular and nearly parabolic for the two respective cases. Theoretical pull speed for silicon ribbon 0.01 cm thick, where the loss of latent heat of fusion is by radiation to ambient temperature (300 K) only, is shown to be 1 cm/sec for horizontal growth extending 2 cm over the melt and with no heat conduction either to or from the melt. Further enhancement of ribbon growth rate by placing cooling blocks adjacent to the top surface is shown to be theoretically possible.

The effect of basal channels on oceanic ice-shelf melting

NASA Astrophysics Data System (ADS)

Millgate, Thomas; Holland, Paul R.; Jenkins, Adrian; Johnson, Helen L.

2013-12-01

The presence of ice-shelf basal channels has been noted in a number of Antarctic and Greenland ice shelves, but their impact on basal melting is not fully understood. Here we use the Massachusetts Institute of Technology general circulation model to investigate the effect of ice-shelf basal channels on oceanic melt rate for an idealized ice shelf resembling the floating tongue of Petermann Glacier in Greenland. The introduction of basal channels prevents the formation of a single geostrophically balanced boundary current; instead the flow is diverted up the right-hand (Coriolis-favored) side of each channel, with a return flow in the opposite direction on the left-hand side. As the prescribed number of basal channels is increased the mean basal melt rate decreases, in agreement with previous studies. For a small number of relatively wide channels the subice flow is found to be a largely geostrophic horizontal circulation. The reduction in melt rate is then caused by an increase in the relative contribution of weakly melting channel crests and keels. For a larger number of relatively narrow channels, the subice flow changes to a vertical overturning circulation. This change in circulation results in a weaker sensitivity of melt rates to channel size. The transition between the two regimes is governed by the Rossby radius of deformation. Our results explain why basal channels play an important role in regulating basal melting, increasing the stability of ice shelves.

Viscous constitutive relations of solid-liquid composites in terms of grain boundary contiguity: 1. Grain boundary diffusion control model

NASA Astrophysics Data System (ADS)

Takei, Yasuko; Holtzman, Benjamin K.

2009-06-01

Viscous constitutive relations of partially molten rocks deforming in the regime of grain boundary (GB) diffusion creep are derived theoretically on the basis of microstructural processes at the grain scale. The viscous constitutive relation developed in this study is based on contiguity as an internal state variable, which enables us to take into account the detailed effects of grain-scale melt distribution observed in experiments. Compared to the elasticities derived previously for the same microstructural model, the viscosities are much more sensitive to the presence of melt and variations in contiguity. As explored in this series of three companion papers, this "contiguity" model predicts that a very small amount of melt (ϕ < 0.01) significantly reduces the bulk and shear viscosities. Furthermore, a large anisotropy in viscosity is produced by anisotropy in contiguity, which occurs in deforming partially molten rocks. These results have important implications for deformation and melt extraction at small melt fractions, as well as for shear-induced melt segregation. The viscous and elastic constitutive relations derived in terms of contiguity bridge microscopic grain-scale and macroscopic continuum properties. These constitutive relations are essential for investigating melt migration dynamics in a forward sense on the basis of the basic equations of two-phase dynamics and in an inverse sense on the basis of seismological observations.

Modeling the Spreading of Glacial Melt Water from the Amundsen and Bellingshausen Seas

NASA Astrophysics Data System (ADS)

Nakayama, Y.; Timmermann, R.; Rodehacke, C. B.; Schröder, M.; Hellmer, H. H.

2014-12-01

The ice shelves and glaciers of the West Antarctic Ice Sheet (WAIS) are rapidly thinning, especially in the Amundsen Sea (AS) and Bellingshausen Sea (BS). The high basal melting of these small ice shelves is caused by relatively warm Circumpolar Deep Water (CDW) that, based on observations, mainly intrudes via two submarine glacial troughs located at the eastern and central AS continental shelf break. When CDW reaches the grounding line of the fringing glaciers, it melts the glaciers and forms buoyant melt water plumes. As the glacial melt becomes part of the AS shelf circulation, it may cause a freshening of the shelf water locally as well as remotely in the Ross Sea (RS). To test whether the observed freshening of the RS is a consequence of the enhanced basal melting of AS ice shelves, we use Finite-Element Sea-ice/ice-shelf/Ocean Model (FESOM) with a horizontal resolution of 2-10 km on the AS and BS continental shelves. The model is forced with 6-hourly atmospheric data from the National Centers for Environmental Prediction Climate Forecast System Reanalysis (NCEP-CFSR) for the period 1979-1988. The model results show bottom temperatures in the AS and BS close to observations, and basal melt rates of AS and BS ice shelves consistent with other observation-based estimates. Using several independent virtual passive tracers to identify pathways of the glacial melt, we find that the melt water from the ice shelves in the AS flows towards the Ross Ice Shelf front. After 10 years of simulation, about half of the melt water in the Ross Sea originates from the Getz Ice Shelf. Further, we investigate the sensitivity of the melt water transport into the RS associated with the strength of the basal melt water flux. When this flux is increased by 30%, the transport of glacial melt into the RS more than doubles, supporting the idea that the basal melting of AS and BS ice shelves is one of the main reasons for the freshening of the RS continental shelf.

Analysis of RET promoter CpG island methylation using methylation-specific PCR (MSP), pyrosequencing, and methylation-sensitive high-resolution melting (MS-HRM): impact on stage II colon cancer patient outcome.

PubMed

Draht, Muriel X G; Smits, Kim M; Jooste, Valérie; Tournier, Benjamin; Vervoort, Martijn; Ramaekers, Chantal; Chapusot, Caroline; Weijenberg, Matty P; van Engeland, Manon; Melotte, Veerle

2016-01-01

Already since the 1990s, promoter CpG island methylation markers have been considered promising diagnostic, prognostic, and predictive cancer biomarkers. However, so far, only a limited number of DNA methylation markers have been introduced into clinical practice. One reason why the vast majority of methylation markers do not translate into clinical applications is lack of independent validation of methylation markers, often caused by differences in methylation analysis techniques. We recently described RET promoter CpG island methylation as a potential prognostic marker in stage II colorectal cancer (CRC) patients of two independent series. In the current study, we analyzed the RET promoter CpG island methylation of 241 stage II colon cancer patients by direct methylation-specific PCR (MSP), nested-MSP, pyrosequencing, and methylation-sensitive high-resolution melting (MS-HRM). All primers were designed as close as possible to the same genomic region. In order to investigate the effect of different DNA methylation assays on patient outcome, we assessed the clinical sensitivity and specificity as well as the association of RET methylation with overall survival for three and five years of follow-up. Using direct-MSP and nested-MSP, 12.0 % (25/209) and 29.6 % (71/240) of the patients showed RET promoter CpG island methylation. Methylation frequencies detected by pyrosequencing were related to the threshold for positivity that defined RET methylation. Methylation frequencies obtained by pyrosequencing (threshold for positivity at 20 %) and MS-HRM were 13.3 % (32/240) and 13.8 % (33/239), respectively. The pyrosequencing threshold for positivity of 20 % showed the best correlation with MS-HRM and direct-MSP results. Nested-MSP detected RET promoter CpG island methylation in deceased patients with a higher sensitivity (33.1 %) compared to direct-MSP (10.7 %), pyrosequencing (14.4 %), and MS-HRM (15.4 %). While RET methylation frequencies detected by nested-MSP, pyrosequencing, and MS-HRM varied, the prognostic effect seemed similar (HR 1.74, 95 % CI 0.97-3.15; HR 1.85, 95 % CI 0.93-3.86; HR 1.83, 95 % CI 0.92-3.65, respectively). Our results show that upon optimizing and aligning four RET methylation assays with regard to primer location and sensitivity, differences in methylation frequencies and clinical sensitivities are observed; however, the effect on the marker's prognostic outcome is minimal.

Glacial cycles drive variations in the production of oceanic crust

NASA Astrophysics Data System (ADS)

Crowley, J. W.; Katz, R. F.; Langmuir, C. H.; Huybers, P. J.

2013-12-01

Changes in sea level accompanying glacial cycles affect the static pressure within the asthenosphere; these variations could modulate melting rates beneath the mid-ocean ridge system as well as crustal thickness. These effects can be investigated and quantified using models of ridges based on conservation of mass, momentum, energy, and composition for two phases (magma & mantle) and two thermodynamic components (enriched & depleted). The models predict that the sensitivity of crustal thickness to oscillations in sea-level depends on the period of oscillation, the spreading rate of the ridge, and the assumed permeability scale of the melting regime. In contrast to previous studies (Huybers & Langmuir, 2009 and Lund & Asimow, 2011), the new results indicate that effects are larger for ridges with faster spreading rates. They also show that the dominant period of variations in crustal thickness changes with spreading rate and permeability. Sea-level variations with periods in the range of 10 ky - 100 ky can result in significant changes in crustal thickness that are orders of magnitude larger than the sea-level variations that drive them. Accurately modelling this process requires the inclusion of two previously unaccounted for processes: (1) determining the volume of the melting regime that is consistent with the ridge spreading rate and (2) properly treating the transport of melt. These enable us to capture the non-linear dependencies on spreading rate and other model parameters. Spectral analysis of bathymetry at two ridge segments that have a symmetric bathymetric signal and hence are undisturbed by off-axis volcanism or ridge jumps reveals the presence of variability at frequencies associated with precession, obliquity, and the 100 ky glacial/inter-glacial variability. Furthermore, the faster spreading ridge has larger amplitude responses to changes in sea level and shows a proportionately greater response at higher frequencies. These observations reinforce the possible links among climate cycles at the surface, mantle melting at depth and the crustal fabric of the sea floor.

Rapid identification of drug-type strains in Cannabis sativa using loop-mediated isothermal amplification assay.

PubMed

Kitamura, Masashi; Aragane, Masako; Nakamura, Kou; Watanabe, Kazuhito; Sasaki, Yohei

2017-01-01

In Cannabis sativa L., tetrahydrocannabinol (THC) is the primary psychoactive compound and exists as the carboxylated form, tetrahydrocannabinolic acid (THCA). C. sativa is divided into two strains based on THCA content-THCA-rich (drug-type) strains and THCA-poor (fiber-type) strains. Both strains are prohibited by law in many countries including Japan, whereas the drug-type strains are regulated in Canada and some European countries. As the two strains cannot be discriminated by morphological analysis, a simple method for identifying the drug-type strains is required for quality control in legal cultivation and forensic investigation. We have developed a novel loop-mediated isothermal amplification (LAMP) assay for identifying the drug-type strains of C. sativa. We designed two selective LAMP primer sets for on-site or laboratory use, which target the drug-type THCA synthase gene. The LAMP assay was accomplished within approximately 40 min. The assay showed high specificity for the drug-type strains and its sensitivity was the same as or higher than that of conventional polymerase chain reaction. We also showed the effectiveness of melting curve analysis that was conducted after the LAMP assay. The melting temperature values of the drug-type strains corresponded to those of the cloned drug-type THCA synthase gene, and were clearly different from those of the cloned fiber-type THCA synthase gene. Moreover, the LAMP assay with simple sample preparation could be accomplished within 1 h from sample treatment to identification without the need for special devices or techniques. Our rapid, sensitive, specific, and simple assay is expected to be applicable to laboratory and on-site detection.

High resolution melting (HRM) analysis as a new tool for rapid identification of Salmonella enterica serovar Gallinarum biovars Pullorum and Gallinarum.

PubMed

Ren, Xingxing; Fu, Ying; Xu, Chenggang; Feng, Zhou; Li, Miao; Zhang, Lina; Zhang, Jianmin; Liao, Ming

2017-05-01

Salmonella enterica serovar Gallinarum biovars Pullorum and Gallinarum represent the most common causative agents of chicken salmonellosis, which result in high mortality and morbidity throughout the world. It is difficult and laborious to discriminate these diseases based on biochemical or phenotypic methods. Herein, we report the development of a single nucleotide polymorphism (SNP) PCR-high resolution melt (PCR-HRM) assay for the detection and discrimination of both S. Pullorum and S. Gallinarun. The gene rfbS, which encodes a factor involved in the biosynthesis of ADP paratose in serogroup D of Salmonella, has been identified as a robust genetic marker for the identification of S. Pullorum and S. Gallinarun based on polymorphisms at positions 237 and 598. Therefore, PCR-HRM analyses were used to characterize this gene. A total of 15 reference and 33 clinical isolates of Salmonella and related Gram-negative bacteria were detected using 2 sets of primers. Our PCR-HRM assay could distinguish S. Pullorum from S. Gallinarun and other strains using the primer pair SP-237F/237R. Similarly, S. Gallinarun could be distinguished from S. Pullorum and other strains using primer set SG-598F/598R. These 2 assays showed high specificity (100%) for both S. Pullorum and S. Gallinarun; the sensitivity of these 2 assays was at least 100-fold greater than that of the allele-specific PCR assay. This present study demonstrated that HRM analysis represents a potent, simple, and economic tool for the rapid, specific, and sensitive detection of S. Pullorum and S. Gallinarun. Our approach also may aid efforts for purification of Avian Salmonella disease. © 2016 Poultry Science Association Inc.

Molecular dynamics simulations of damage production by thermal spikes in Ge

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lopez, Pedro; Pelaz, Lourdes; Santos, Ivan

2012-02-01

Molecular dynamics simulation techniques are used to analyze damage production in Ge by the thermal spike process and to compare the results to those obtained for Si. As simulation results are sensitive to the choice of the inter-atomic potential, several potentials are compared in terms of material properties relevant for damage generation, and the most suitable potentials for this kind of analysis are identified. A simplified simulation scheme is used to characterize, in a controlled way, the damage generation through the local melting of regions in which energy is deposited. Our results show the outstanding role of thermal spikes inmore » Ge, since the lower melting temperature and thermal conductivity of Ge make this process much more efficient in terms of damage generation than in Si. The study is extended to the modeling of full implant cascades, in which both collision events and thermal spikes coexist. Our simulations reveal the existence of bigger damaged or amorphous regions in Ge than in Si, which may be formed by the melting and successive quenching induced by thermal spikes. In the particular case of heavy ion implantation, defect structures in Ge are not only bigger, but they also present a larger net content in vacancies than in Si, which may act as precursors for the growth of voids and the subsequent formation of honeycomb-like structures.« less

Automated Forensic Animal Family Identification by Nested PCR and Melt Curve Analysis on an Off-the-Shelf Thermocycler Augmented with a Centrifugal Microfluidic Disk Segment.

PubMed

Keller, Mark; Naue, Jana; Zengerle, Roland; von Stetten, Felix; Schmidt, Ulrike

2015-01-01

Nested PCR remains a labor-intensive and error-prone biomolecular analysis. Laboratory workflow automation by precise control of minute liquid volumes in centrifugal microfluidic Lab-on-a-Chip systems holds great potential for such applications. However, the majority of these systems require costly custom-made processing devices. Our idea is to augment a standard laboratory device, here a centrifugal real-time PCR thermocycler, with inbuilt liquid handling capabilities for automation. We have developed a microfluidic disk segment enabling an automated nested real-time PCR assay for identification of common European animal groups adapted to forensic standards. For the first time we utilize a novel combination of fluidic elements, including pre-storage of reagents, to automate the assay at constant rotational frequency of an off-the-shelf thermocycler. It provides a universal duplex pre-amplification of short fragments of the mitochondrial 12S rRNA and cytochrome b genes, animal-group-specific main-amplifications, and melting curve analysis for differentiation. The system was characterized with respect to assay sensitivity, specificity, risk of cross-contamination, and detection of minor components in mixtures. 92.2% of the performed tests were recognized as fluidically failure-free sample handling and used for evaluation. Altogether, augmentation of the standard real-time thermocycler with a self-contained centrifugal microfluidic disk segment resulted in an accelerated and automated analysis reducing hands-on time, and circumventing the risk of contamination associated with regular nested PCR protocols.

Experimental constraints on the origin of high-Mg andesites: the effect of H2O and silica activity on mantle melt compositions

NASA Astrophysics Data System (ADS)

Moore, G. M.; Roggensack, K.

2009-12-01

Understanding the role volatiles (H2O, CO2) play in the origin of mantle-related melts is an important part of arc magma petrogenesis, and has implications for our understanding of many aspects of subduction zone volcanism including mass fluxes, volcanic degassing, and eruptive style. Both the occurrence of high-Mg andesites (HMA) in particular tectonic settings and their association with high H2O contents make HMA a unique window into hydrous subduction-related mantle melting processes. A significant amount of experimental work at mantle conditions has shown that increasing H2O content in the melt will not only stabilize olivine with respect to orthopyroxene, but will also increase the SiO2 content of the melt to andesitic amounts (e.g. Gaetani and Grove, 1998; Tatsumi, 1981; Tatsumi, 2006), suggesting that HMA could be a primary mantle melt if enough H2O is present. This hypothesis is supported by the rare occurrence of mantle xenoliths in Mg-rich andesites (Blatter and Carmichael, 1998; Tanaka and Aoki, 1981) that often contain hydrous mineral phases. Reliable thermodynamic modelling of such hydrous silicate melts in equilibrium with the mantle has proven difficult because of the relatively small set of experiments that allow this type of analysis. There are also experimental and analytical difficulties in dealing with hydrous high P-T samples (e.g. quench to a glass, rapid melt-solid reaction on quench, electron beam sensitivity of resulting glass, volatile content determination, etc), and statistical difficulties in determining robust model parameters because of the large degree of co-variance in the data set (e.g. T and H2O melt content). With the goal of addressing these problems, we conducted a series of “sandwich” type experiments at 1.0 GPa and 1200 deg C that saturated various hydrous melt compositions with olivine and opx. Our previous results have shown that the silica activity coefficient correlates negatively with H2O content (Moore and Roggensack, 2007), consistent with the earlier experimental phase equilibria results and the modeling of Carmichael (2002). New results using a broader range of starting melt compositions are presented here, showing that there is a significant effect of initial alkali content on the amount of melting of the mineral assemblage. This has the net result that the experimental melt compositions converge to a narrow range at high H2O contents that do not reproduce the observed HMA compositions, implying that the experimental P-T conditions used are not correct for generating HMA magmas. Use of this new data to thermodynamically model the influence of P, T, and melt composition (including H2O content) is underway, and will constrain whether hydrous arc lavas, including HMA, can be attributed to a primitive mantle origin, or whether other magmatic processes are necessary to generate their observed bulk compositions. It will also quantify the amount of H2O necessary to generate such magmas, giving insight into the potential H2O content present in the sub-arc mantle source regions, and allowing a more precise estimate of volatile fluxes in volcanic arc settings.

Manufacturing Methods and Technology Program Accomplishments

DTIC Science & Technology

1980-10-01

573,74,77.78,4139 AppI of Radar to Ballistic ACC Test of Amo (ARBAT) 43 574 4162 Automated Line for Melt-Pour Process of High Explosives 44 571,72 4171 Investigation...Sensitivity Criteria 49 576 4288 Explosive Safe Separation and Sensitivity Criteria 50 577 4288 Explosive Safe Separation and Sensitivity Sriteria 51...1 ANICIPATE. BEN(EPITS ACTUAL BENE’ITS PRO3ECT NUMBER $ SAVINGS OTHER SAVINGS OTHER REMARKS 5 73 1139 REDUCED EXPLOSIVE HAZARD TWO MACHINES WERE

Retention and radiative forcing of black carbon in Eastern Sierra Nevada snow

NASA Astrophysics Data System (ADS)

Sterle, K. M.; McConnell, J. R.; Dozier, J.; Edwards, R.; Flanner, M. G.

2012-06-01

Snow and glacier melt water contribute water resources to a fifth of Earth's population. Snow melt processes are sensitive not only to temperature changes, but also changes in albedo caused by deposition of particles such as refractory black carbon (rBC) and continental dust. The concentrations, sources, and fate of rBC particles in seasonal snow and its surface layers are uncertain, and thus an understanding of rBC's effect on snow albedo, melt processes, and radiation balance is critical for water management in a changing climate. Measurements of rBC in a sequence of snow pits and surface snow samples in the Eastern Sierra Nevada of California during the snow accumulation and melt seasons of 2009 show that concentrations of rBC were enhanced seven fold in surface snow (~25 ng g-1) compared to bulk values in the snow pack (~3 ng g-1). Unlike major ions which are preferentially released during initial melt, rBC and continental dust are retained in the snow, enhancing concentrations late into spring, until a final flush well into the melt period. We estimate a combined rBC and continental dust surface radiative forcing of 20 to 40 W m-2 during April and May, with dust likely contributing a greater share of the forcing than rBC.

Fukushima Daiichi Unit 1 ex-vessel prediction: Core melt spreading

DOE Office of Scientific and Technical Information (OSTI.GOV)

Farmer, M. T.; Robb, K. R.; Francis, M. W.

Lower head failure and corium-concrete interaction were predicted to occur at Fukushima Daiichi Unit 1 (1F1) by several different system-level code analyses, including MELCOR v2.1 and MAAP5. Although these codes capture a wide range of accident phenomena, they do not contain detailed models for ex-vessel core melt behavior. However, specialized codes exist for analysis of ex-vessel melt spreading (e.g., MELTSPREAD) and long-term debris coolability (e.g., CORQUENCH). On this basis, an analysis has been carried out to further evaluate ex-vessel behavior for 1F1 using MELTSPREAD and CORQUENCH. Best-estimate melt pour conditions predicted by MELCOR v2.1 and MAAP5 were used as input.more » MELTSPREAD was then used to predict the spatially-dependent melt conditions and extent of spreading during relocation from the vessel. Lastly, this information was then used as input for the long-term debris coolability analysis with CORQUENCH that is reported in a companion paper.« less

Fukushima Daiichi Unit 1 ex-vessel prediction: Core melt spreading

DOE PAGES

Farmer, M. T.; Robb, K. R.; Francis, M. W.

2016-10-31

Lower head failure and corium-concrete interaction were predicted to occur at Fukushima Daiichi Unit 1 (1F1) by several different system-level code analyses, including MELCOR v2.1 and MAAP5. Although these codes capture a wide range of accident phenomena, they do not contain detailed models for ex-vessel core melt behavior. However, specialized codes exist for analysis of ex-vessel melt spreading (e.g., MELTSPREAD) and long-term debris coolability (e.g., CORQUENCH). On this basis, an analysis has been carried out to further evaluate ex-vessel behavior for 1F1 using MELTSPREAD and CORQUENCH. Best-estimate melt pour conditions predicted by MELCOR v2.1 and MAAP5 were used as input.more » MELTSPREAD was then used to predict the spatially-dependent melt conditions and extent of spreading during relocation from the vessel. Lastly, this information was then used as input for the long-term debris coolability analysis with CORQUENCH that is reported in a companion paper.« less

Influence of convection on microstructure

NASA Technical Reports Server (NTRS)

Wilcox, William R.; Regel, Liya L.

1992-01-01

The primary motivation for this research has been to determine the cause for space processing altering the microstructure of some eutectics, especially the MnBi-Bi eutectic. Prior experimental research at Grumman and here showed that the microstructure of MnBi-Bi eutectic is twice as fine when solidified in space or in a magnetic field, is uninfluenced by interfacial temperature gradient, adjusts very quickly to changes in freezing rate, and becomes coarser when spin-up/spin-down (accelerated crucible rotation technique) is used during solidification. Theoretical work at Clarkson predicted that buoyancy driven convection on earth could not account for the two fold change in fiber spacing caused by solidification in space. However, a lamellar structure with a planar interface was assumed, and the Soret effect was not included in the analysis. Experimental work at Clarkson showed that the interface is not planar, and that MnBi fibers project out in front of the Bi matrix on the order of one fiber diameter. Originally four primary hypotheses were to be tested under this current grant: (1) a fibrous microstructure is much more sensitive to convection than a lamellar microstructure, which was assumed in our prior theoretical treatment; (2) an interface with one phase projecting out into the melt is much more sensitive to convection than a planar interface, which was assumed in our prior theoretical treatment; (3) the Soret effect is much more important in the absence of convection and has a sufficiently large influence on microstructure that its action can explain the flight results; and (4) the microstructure is much more sensitive to convection when the composition of the bulk melt is off eutectic. As reported previously, we have learned that while a fibrous microstructure and a non-planar interface are more sensitive to convection than a lamellar microstructure with a planar interface, the influence of convection remains too small to explain the flight and magnetic field results. Similarly addition of the Soret effect does not explain the flight and magnetic field results.

Integrated Assessment and Improvement of the Quality Assurance System for the Cosworth Casting Process

NASA Astrophysics Data System (ADS)

Yousif, Dilon

The purpose of this study was to improve the Quality Assurance (QA) System at the Nemak Windsor Aluminum Plant (WAP). The project used Six Sigma method based on Define, Measure, Analyze, Improve, and Control (DMAIC). Analysis of in process melt at WAP was based on chemical, thermal, and mechanical testing. The control limits for the W319 Al Alloy were statistically recalculated using the composition measured under stable conditions. The "Chemistry Viewer" software was developed for statistical analysis of alloy composition. This software features the Silicon Equivalency (SiBQ) developed by the IRC. The Melt Sampling Device (MSD) was designed and evaluated at WAP to overcome traditional sampling limitations. The Thermal Analysis "Filters" software was developed for cooling curve analysis of the 3XX Al Alloy(s) using IRC techniques. The impact of low melting point impurities on the start of melting was evaluated using the Universal Metallurgical Simulator and Analyzer (UMSA).

Passive microwave derived snowmelt timing: significance, spatial and temporal variability, and potential applications

NASA Astrophysics Data System (ADS)

Semmens, Kathryn Alese

Snow accumulation and melt are dynamic features of the cryosphere indicative of a changing climate. Spring melt and refreeze timing are of particular importance due to the influence on subsequent hydrological and ecological processes, including peak runoff and green-up. To investigate the spatial and temporal variability of melt timing across a sub-arctic region (the Yukon River Basin (YRB), Alaska/Canada) dominated by snow and lacking substantial ground instrumentation, passive microwave remote sensing was utilized to provide daily brightness temperatures (Tb) regardless of clouds and darkness. Algorithms to derive the timing of melt onset and the end of melt-refreeze, a critical transition period where the snowpack melts during the day and refreezes at night, were based on thresholds for Tb and diurnal amplitude variations (day and night difference). Tb data from the Special Sensor Microwave Imager (1988 to 2011) was used for analyzing YRB terrestrial snowmelt timing and for characterizing melt regime patterns for icefields in Alaska and Patagonia. Tb data from the Advanced Microwave Scanning Radiometer for EOS (2003 to 2010) was used for determining the occurrence of early melt events (before melt onset) associated with fog or rain on snow, for investigating the correlation between melt timing and forest fires, and for driving a flux-based snowmelt runoff model. From the SSM/I analysis: the melt-refreeze period lengthened for the majority of the YRB with later end of melt-refreeze and earlier melt onset; and positive Tb anomalies were found in recent years from glacier melt dynamics. From the AMSR-E analysis: early melt events throughout the YRB were most often associated with warm air intrusions and reflect a consistent spatial distribution; years and areas of earlier melt onset and refreeze had more forest fire occurrences suggesting melt timing's effects extend to later seasons; and satellite derived melt timing served as an effective input for model simulation of discharge in remote, ungauged snow-dominated basins. The melt detection methodology and results present a new perspective on the changing cryosphere, provide an understanding of melt's influence on other earth system processes, and develop a baseline from which to assess and evaluate future change. The temporal and spatial variability conveyed through the regional context of this research may be useful to communities in climate change adaptation planning.

Isoquinoline alkaloids and their binding with DNA: calorimetry and thermal analysis applications.

PubMed

Bhadra, Kakali; Kumar, Gopinatha Suresh

2010-11-01

Alkaloids are a group of natural products with unmatched chemical diversity and biological relevance forming potential quality pools in drug screening. The molecular aspects of their interaction with many cellular macromolecules like DNA, RNA and proteins are being currently investigated in order to evolve the structure activity relationship. Isoquinolines constitute an important group of alkaloids. They have extensive utility in cancer therapy and a large volume of data is now emerging in the literature on their mode, mechanism and specificity of binding to DNA. Thermodynamic characterization of the binding of these alkaloids to DNA may offer key insights into the molecular aspects that drive complex formation and these data can provide valuable information about the balance of driving forces. Various thermal techniques have been conveniently used for this purpose and modern calorimetric instrumentation provides direct and quick estimation of thermodynamic parameters. Thermal melting studies and calorimetric techniques like isothermal titration calorimetry and differential scanning calorimetry have further advanced the field by providing authentic, reliable and sensitive data on various aspects of temperature dependent structural analysis of the interaction. In this review we present the application of various thermal techniques, viz. isothermal titration calorimetry, differential scanning calorimetry and optical melting studies in the characterization of drug-DNA interactions with particular emphasis on isoquinoline alkaloid-DNA interaction.

The use of Rheology Combined with Differential Scanning Calorimetry to Elucidate the Granulation Mechanism of an Immiscible Formulation During Continuous Twin-Screw Melt Granulation.

PubMed

Monteyne, Tinne; Heeze, Liza; Mortier, Severine Therese F C; Oldörp, Klaus; Cardinaels, Ruth; Nopens, Ingmar; Vervaet, Chris; Remon, Jean-Paul; De Beer, Thomas

2016-10-01

Twin screw hot melt granulation (TS HMG) is a valuable, but still unexplored alternative to continuous granulation of moisture sensitive drugs. However, knowledge of the material behavior during TS HMG is crucial to optimize the formulation, process and resulting granule properties. The aim of this study was to evaluate the agglomeration mechanism during TS HMG using a rheometer in combination with differential scanning calorimetry (DSC). An immiscible drug-binder formulation (caffeine-Soluplus(®)) was granulated via TS HMG in combination with thermal and rheological analysis (conventional and Rheoscope), granule characterization and Near Infrared chemical imaging (NIR-CI). A thin binder layer with restricted mobility was formed on the surface of the drug particles during granulation and is covered by a second layer with improved mobility when the Soluplus(®) concentration exceeded 15% (w/w). The formation of this second layer was facilitated at elevated granulation temperatures and resulted in smaller and more spherical granules. The combination of thermal and rheological analysis and NIR-CI images was advantageous to develop in-depth understanding of the agglomeration mechanism during continuous TS HMG and provided insight in the granule properties as function of process temperature and binder concentration.

Geenland Glacier Albedo Variability

NASA Astrophysics Data System (ADS)

2004-01-01

The program for Arctic Regional Climate Assessment (PARCA) is a NASA-funded project with the prime goal of addressing the mass balance of the Greenland ice sheet. Since the formal initiation of the program in 1995, there has been a significant improvement in the estimates of the mass balance of the ice sheet. Results from this program reveal that the high-elevation regions of the ice sheet are approximately in balance, but the margins are thinning. Laser surveys reveal significant thinning along 70 percent of the ice sheet periphery below 2000 m elevations, and in at least one outlet glacier, Kangerdlugssuaq in southeast Greenland, thinning has been as much as 10 m/yr. This study examines the albedo variability in four outlet glaciers to help separate out the relative contributions of surface melting versus ice dynamics to the recent mass balance changes. Analysis of AVHRR Polar Pathfinder albedo shows that at the Petermann and Jakobshavn glaciers, there has been a negative trend in albedo at the glacier terminus from 1981 to 2000, whereas the Stor+strommen and Kangerdlugssuaq glaciers show slightly positive trends in albedo. These findings are consistent with recent observations of melt extent from passive microwave data which show more melt on the western side of Greenland and slightly less on the eastern side. Significance of albedo trends will depend on where and when the albedo changes occur. Since the majority of surface melt occurs in the shallow sloping western margin of the ice sheet where the shortwave radiation dominates the energy balance in summer (e.g. Jakobshavn region) this region will be more sensitive to changes in albedo than in regions where this is not the case. Near the Jakobshavn glacier, even larger changes in albedo have been observed, with decreases as much as 20 percent per decade.

Greenland Glacier Albedo Variability

NASA Technical Reports Server (NTRS)

2004-01-01

The program for Arctic Regional Climate Assessment (PARCA) is a NASA-funded project with the prime goal of addressing the mass balance of the Greenland ice sheet. Since the formal initiation of the program in 1995, there has been a significant improvement in the estimates of the mass balance of the ice sheet. Results from this program reveal that the high-elevation regions of the ice sheet are approximately in balance, but the margins are thinning. Laser surveys reveal significant thinning along 70 percent of the ice sheet periphery below 2000 m elevations, and in at least one outlet glacier, Kangerdlugssuaq in southeast Greenland, thinning has been as much as 10 m/yr. This study examines the albedo variability in four outlet glaciers to help separate out the relative contributions of surface melting versus ice dynamics to the recent mass balance changes. Analysis of AVHRR Polar Pathfinder albedo shows that at the Petermann and Jakobshavn glaciers, there has been a negative trend in albedo at the glacier terminus from 1981 to 2000, whereas the Stor+strommen and Kangerdlugssuaq glaciers show slightly positive trends in albedo. These findings are consistent with recent observations of melt extent from passive microwave data which show more melt on the western side of Greenland and slightly less on the eastern side. Significance of albedo trends will depend on where and when the albedo changes occur. Since the majority of surface melt occurs in the shallow sloping western margin of the ice sheet where the shortwave radiation dominates the energy balance in summer (e.g. Jakobshavn region) this region will be more sensitive to changes in albedo than in regions where this is not the case. Near the Jakobshavn glacier, even larger changes in albedo have been observed, with decreases as much as 20 percent per decade.

Corrosion Testing of Zirconia, Beryllia and Magnesia Ceramics in Molten Alkali Metal Carbonates at 900°C

NASA Astrophysics Data System (ADS)

Kaplan, Valery; Lubomirsky, Igor

An electrochemical cell containing molten Li2CO3-Li2O has been proposed for the conversion of the greenhouse gas CO2 to CO, which can then either be used to power gas turbines or converted to methanol. Since efficient electrolysis takes place at 900°C, the materials which can be used in such a cell must satisfy stringent requirements. In the current work, we have examined the static corrosion resistance of zirconia, beryllia and magnesia ceramics at 900°C in the Li2CO3-Li2O mixture and in a Li-Na-K carbonate eutectic mixture with the ultimate objective of identifying suitable electrically insulating materials. Conclusions regarding material stability were based on elemental analysis of the melt, primarily via X-ray photoelectron spectroscopy, a particularly sensitive technique. It was found that magnesia is completely stable for at least 33 hrs in a Li2CO3-Li2O melt, while a combined lithium titanate/lithium zirconate layer forms on the zirconia ceramic as detected by XRD. Under the same melt conditions, beryllia shows considerable leaching into solution. In a Li-Na-K carbonate eutectic mixture containing 10.2 mol% oxide at 900°C under standard atmospheric conditions, magnesia showed no signs of degradation. Stabilization of the zirconia content of the eutectic mixture at 0.01-0.02 at% after 2 hrs is again explained by the formation of a lithium titanate/ lithium zirconate coating. On the basis of these results, we conclude that only magnesia can be satisfactorily used as an insulating material in electrolysis cells containing Li2CO3-Li2O melts.

Managing the effects of accelerated glacial melting on volcanic collapse and debris flows: Planchon-Peteroa Volcano, Southern Andes

NASA Astrophysics Data System (ADS)

Tormey, Daniel

2010-11-01

Glaciated mountains are among the most sensitive environments to climatic changes, and recent work has shown that large-scale glacial melting, including at the end of the Pleistocene, caused a significant increase in the incidence of large volcanic sector collapse and debris flows on then-active volcanoes. With current accelerated rates of glacial melting, glaciated active volcanoes are at an increasing risk of sector collapse, debris flow and landslide. These catastrophic events are Earth's most damaging erosion phenomenon, causing extensive property damage and loss of life. This paper illustrates these effects in well-studied settings, focusing on the end-Pleistocene to Holocene glaciovolcanic growth and destruction of the cone of the active volcano Planchon-Peteroa in the Andean Southern Volcanic Zone at latitude 35° 15' S, along the border between Chile and Argentina. The development of the volcano over the last 14,000 years illustrates how glacial melting and magmatic activity can trigger landslides and sector collapses. Planchon had a large sector collapse that produced a highly mobile and erosive debris avalanche 11,000 years BP, and other slope instabilities during the end-Pleistocene/early Holocene deglaciation. The summit amphitheater left after the sector collapse was subject to alternating periods of glaciation and melting-induced lake formation. Breaching of the moraine dams then formed lahars and landslides originating at the western edge of the summit amphitheater, and the deposits are preserved along the western flank of the volcano. Deep incision of moraine deposits further down the western slope of the volcano indicates that the lahars and landslides were water-rich and had high erosive power. As illustrated by Planchon-Peteroa, the interplay among glacial growth and melting, magmatic activity, and slope stability is complex, but must be accounted for in volcanic hazard assessment. Planchon-Peteroa currently has the southernmost temperate zone mountain glacier in the Andes. Accelerated glacial melting at present rates of climate change could lead to a recurrence of many of these post-Pleistocene events. A framework for augmenting hazard assessments and countermeasures is also proposed based on the types of hazards presented by accelerated glacial melting. Glacial melting may lead to volcanic hazards in areas not previously considered at risk, and hence there may be a low level of preparedness. Compared to the end-Pleistocene accelerated glacial melting and sector collapses, present-day glacial melting in volcanic terrain has the potential to affect large human populations. Human settlements, hydropower production, forestry, mining and wilderness tourism are all concentrated near some glaciated volcanic areas. For example, the area covered by the debris avalanche from Volcan Planchon currently supports a rich agricultural economy in Chile. Effective risk management is needed to address the issues of changing patterns in vulnerability, the nature and redistribution of hazards, and the potential socioeconomic consequences of glaciovolcanic events. Since these events are infrequent, local communities frequently do not have a memory of past occurrences, and therefore have a low awareness of the potential effects. Systematic and structured impact assessment allows objective risk analysis, uncertainty analysis, and a framework for balancing countermeasures and contingency measures with public need and acceptance. An impact assessment approach similar to that used in land use planning is presented here, with the following major elements: (i) hazard characterization; (ii) consequence characterization; (iii) risk assessment; (iv) risk control and countermeasures; and (v) risk communication. The emphasis is on effective risk communication, supported by facts, in order to address the increased hazards posed by accelerated glacial melting on volcanic cone stability. Decision makers must then weigh societal acceptance of the risk control and countermeasures against their costs and consequences.

Structural Integration of Sensors/Actuators by Laser Beam Melting for Tailored Smart Components

NASA Astrophysics Data System (ADS)

Töppel, Thomas; Lausch, Holger; Brand, Michael; Hensel, Eric; Arnold, Michael; Rotsch, Christian

2018-03-01

Laser beam melting (LBM), an additive laser powder bed fusion technology, enables the structural integration of temperature-sensitive sensors and actuators in complex monolithic metallic structures. The objective is to embed a functional component inside a metal part without losing its functionality by overheating. The first part of this paper addresses the development of a new process chain for bonded embedding of temperature-sensitive sensor/actuator systems by LBM. These systems are modularly built and coated by a multi-material/multi-layer thermal protection system of ceramic and metallic compounds. The characteristic of low global heat input in LBM is utilized for the functional embedding. In the second part, the specific functional design and optimization for tailored smart components with embedded functionalities are addressed. Numerical and experimental validated results are demonstrated on a smart femoral hip stem.

Apatite/Melt Partitioning Experiments Reveal Redox Sensitivity to Cr, V, Mn, Ni, Eu, W, Th, and U

NASA Technical Reports Server (NTRS)

Righter, K.; Yang, S.; Humayun, M.

2016-01-01

Apatite is a common mineral in terrestrial, planetary, and asteroidal materials. It is commonly used for geochronology (U-Pb), sensing volatiles (H, F, Cl, S), and can concentrate rare earth elements (REE) during magmatic fractionation and in general. Some recent studies have shown that some kinds of phosphate may fractionate Hf and W and that Mn may be redox sensitive. Experimental studies have focused on REE and other lithophile elements and at simplified or not specified oxygen fugacities. There is a dearth of partitioning data for chalcophile, siderophile and other elements between apatite and melt. Here we carry out several experiments at variable fO2 to study the partitioning of a broad range of trace elements. We compare to existing data and then focus on several elements that exhibit redox dependent partitioning behavior.

Sensitivity of a climatologically-driven sea ice model to the ocean heat flux

NASA Technical Reports Server (NTRS)

Parkinson, C. L.; Good, M. R.

1982-01-01

Ocean heat flux sensitivity was studied on a numerical model of sea ice covering the Weddell Sea region of the southern ocean. The model is driven by mean monthly climatological atmospheric variables. For each model run, the ocean heat flux is uniform in both space and time. Ocean heat fluxes below 20 W m to the minus 2 power do not provide sufficient energy to allow the ice to melt to its summertime thicknesses and concentrations by the end of the 14 month simulation, whereas ocean heat fluxes of 30 W m to the minus 2 power and above result in too much ice melt, producing the almost total disappearance of ice in the Weddell Sea by the end of the 14 months. These results are dependent on the atmospheric forcing fields.

Efficient Flowline Simulations of Ice Shelf-Ocean Interactions: Sensitivity Studies with a Fully Coupled Model

NASA Technical Reports Server (NTRS)

Walker, Ryan Thomas; Holland, David; Parizek, Byron R.; Alley, Richard B.; Nowicki, Sophie M. J.; Jenkins, Adrian

2013-01-01

Thermodynamic flowline and plume models for the ice shelf-ocean system simplify the ice and ocean dynamics sufficiently to allow extensive exploration of parameters affecting ice-sheet stability while including key physical processes. Comparison between geophysically and laboratory-based treatments of ice-ocean interface thermodynamics shows reasonable agreement between calculated melt rates, except where steep basal slopes and relatively high ocean temperatures are present. Results are especially sensitive to the poorly known drag coefficient, highlighting the need for additional field experiments to constrain its value. These experiments also suggest that if the ice-ocean interface near the grounding line is steeper than some threshold, further steepening of the slope may drive higher entrainment that limits buoyancy, slowing the plume and reducing melting; if confirmed, this will provide a stabilizing feedback on ice sheets under some circumstances.

High-Throughput Genotyping of Single Nucleotide Polymorphisms in the Plasmodium falciparum dhfr Gene by Asymmetric PCR and Melt-Curve Analysis▿

PubMed Central

Cruz, Rochelle E.; Shokoples, Sandra E.; Manage, Dammika P.; Yanow, Stephanie K.

2010-01-01

Mutations within the Plasmodium falciparum dihydrofolate reductase gene (Pfdhfr) contribute to resistance to antimalarials such as sulfadoxine-pyrimethamine (SP). Of particular importance are the single nucleotide polymorphisms (SNPs) within codons 51, 59, 108, and 164 in the Pfdhfr gene that are associated with SP treatment failure. Given that traditional genotyping methods are time-consuming and laborious, we developed an assay that provides the rapid, high-throughput analysis of parasite DNA isolated from clinical samples. This assay is based on asymmetric real-time PCR and melt-curve analysis (MCA) performed on the LightCycler platform. Unlabeled probes specific to each SNP are included in the reaction mixture and hybridize differentially to the mutant and wild-type sequences within the amplicon, generating distinct melting curves. Since the probe is present throughout PCR and MCA, the assay proceeds seamlessly with no further addition of reagents. This assay was validated for analytical sensitivity and specificity using plasmids, purified genomic DNA from reference strains, and parasite cultures. For all four SNPs, correct genotypes were identified with 100 copies of the template. The performance of the assay was evaluated with a blind panel of clinical isolates from travelers with low-level parasitemia. The concordance between our assay and DNA sequencing ranged from 84 to 100% depending on the SNP. We also directly compared our MCA assay to a published TaqMan real-time PCR assay and identified major issues with the specificity of the TaqMan probes. Our assay provides a number of technical improvements that facilitate the high-throughput screening of patient samples to identify SP-resistant malaria. PMID:20631115

Melt Segregation and Tidal Heating at Io

NASA Astrophysics Data System (ADS)

Rajendar, A.; Dufek, J.; Roberts, J. H.; Paty, C. S.

2011-12-01

Recent evidence of melt beneath Io's surface (Khurana et al., 2010) and repeated observation of volcanic activity and features consistent with volcanic activity at the surface (e.g. Veeder et al, 1994; Rathbun et al., 2004; Lopes-Gautier et al., 1999; Smith et al., 1979) has raised further questions about the structure of the Galilean moon and the processes that shape it. In this study we examine the thermal state, melt fraction, and multiphase dynamics of melt segregation within Io's interior. Using a coupled multiphase dynamics and tidal heating model we explore the location, spatial extent, and temporal residence times of melt in Io's subsurface, as well as response to orbital parameters. In a thermally evolving body subject to tidal forcing, in which melt production and migration takes place, feedback can occur with respect to the physical and thermal properties. We explore this feedback to produce a thermal model of Io, taking into account the rate of tidal heating and fluid motion within the interior. First, a layered model of the internal structure is assumed. The equations of motion for forced oscillations in a layered spherical body are then solved using the propagator matrix method (Sabadini and Vermeesen, 2004) to obtain the displacements and strains due to tidal motion (Roberts and Nimmo, 2008). From this, the radial distribution of tidal heat generation within Io is calculated. This radial heating profile is then used as input for a multi-phase fluid model in order to obtain an estimate of the radial temperature distribution and thus the material properties and melt fractions. In the multiphase model individual phases (melt and solid residue) separately conserve mass, momentum and enthalpy (Dufek and Bachmann, 2010) allowing us to explore melt segregation phenomena. Enthalpy closure is provided by the MELTS (Ghiorso and Sack, 1995) thermodynamics algorithm, which is called at each point in space. This accounts for the partitioning between latent and sensible heat, and updates the physical properties of the melt and solid phase such as density and heat capacity. With this approach we explore the sensitivity of melt generation and the time between melt production and eruption (the residence time) to mantle chemistry and the layered structure of the moon.

Uncertainty quantification and global sensitivity analysis of the Los Alamos sea ice model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Urrego-Blanco, Jorge Rolando; Urban, Nathan Mark; Hunke, Elizabeth Clare

Changes in the high-latitude climate system have the potential to affect global climate through feedbacks with the atmosphere and connections with midlatitudes. Sea ice and climate models used to understand these changes have uncertainties that need to be characterized and quantified. We present a quantitative way to assess uncertainty in complex computer models, which is a new approach in the analysis of sea ice models. We characterize parametric uncertainty in the Los Alamos sea ice model (CICE) in a standalone configuration and quantify the sensitivity of sea ice area, extent, and volume with respect to uncertainty in 39 individual modelmore » parameters. Unlike common sensitivity analyses conducted in previous studies where parameters are varied one at a time, this study uses a global variance-based approach in which Sobol' sequences are used to efficiently sample the full 39-dimensional parameter space. We implement a fast emulator of the sea ice model whose predictions of sea ice extent, area, and volume are used to compute the Sobol' sensitivity indices of the 39 parameters. Main effects and interactions among the most influential parameters are also estimated by a nonparametric regression technique based on generalized additive models. A ranking based on the sensitivity indices indicates that model predictions are most sensitive to snow parameters such as snow conductivity and grain size, and the drainage of melt ponds. Lastly, it is recommended that research be prioritized toward more accurately determining these most influential parameter values by observational studies or by improving parameterizations in the sea ice model.« less

Uncertainty quantification and global sensitivity analysis of the Los Alamos sea ice model

DOE PAGES

Urrego-Blanco, Jorge Rolando; Urban, Nathan Mark; Hunke, Elizabeth Clare; ...

2016-04-01

Changes in the high-latitude climate system have the potential to affect global climate through feedbacks with the atmosphere and connections with midlatitudes. Sea ice and climate models used to understand these changes have uncertainties that need to be characterized and quantified. We present a quantitative way to assess uncertainty in complex computer models, which is a new approach in the analysis of sea ice models. We characterize parametric uncertainty in the Los Alamos sea ice model (CICE) in a standalone configuration and quantify the sensitivity of sea ice area, extent, and volume with respect to uncertainty in 39 individual modelmore » parameters. Unlike common sensitivity analyses conducted in previous studies where parameters are varied one at a time, this study uses a global variance-based approach in which Sobol' sequences are used to efficiently sample the full 39-dimensional parameter space. We implement a fast emulator of the sea ice model whose predictions of sea ice extent, area, and volume are used to compute the Sobol' sensitivity indices of the 39 parameters. Main effects and interactions among the most influential parameters are also estimated by a nonparametric regression technique based on generalized additive models. A ranking based on the sensitivity indices indicates that model predictions are most sensitive to snow parameters such as snow conductivity and grain size, and the drainage of melt ponds. Lastly, it is recommended that research be prioritized toward more accurately determining these most influential parameter values by observational studies or by improving parameterizations in the sea ice model.« less

Uncertainty quantification and global sensitivity analysis of the Los Alamos sea ice model

NASA Astrophysics Data System (ADS)

Urrego-Blanco, Jorge R.; Urban, Nathan M.; Hunke, Elizabeth C.; Turner, Adrian K.; Jeffery, Nicole

2016-04-01

Changes in the high-latitude climate system have the potential to affect global climate through feedbacks with the atmosphere and connections with midlatitudes. Sea ice and climate models used to understand these changes have uncertainties that need to be characterized and quantified. We present a quantitative way to assess uncertainty in complex computer models, which is a new approach in the analysis of sea ice models. We characterize parametric uncertainty in the Los Alamos sea ice model (CICE) in a standalone configuration and quantify the sensitivity of sea ice area, extent, and volume with respect to uncertainty in 39 individual model parameters. Unlike common sensitivity analyses conducted in previous studies where parameters are varied one at a time, this study uses a global variance-based approach in which Sobol' sequences are used to efficiently sample the full 39-dimensional parameter space. We implement a fast emulator of the sea ice model whose predictions of sea ice extent, area, and volume are used to compute the Sobol' sensitivity indices of the 39 parameters. Main effects and interactions among the most influential parameters are also estimated by a nonparametric regression technique based on generalized additive models. A ranking based on the sensitivity indices indicates that model predictions are most sensitive to snow parameters such as snow conductivity and grain size, and the drainage of melt ponds. It is recommended that research be prioritized toward more accurately determining these most influential parameter values by observational studies or by improving parameterizations in the sea ice model.

Pyroxene-melt equilibria. [for lunar maria basalts

NASA Technical Reports Server (NTRS)

Nielsen, R. L.; Drake, M. J.

1979-01-01

A thermodynamic analysis of pyroxene-melt equilibria is performed through use of a literature survey of analyses of high-Ca pyroxene and coexisting silicate melt pairs and analyses of low-Ca pyroxene silicate melt pairs. Reference is made to a modified version of a model developed by Bottinga and Weill (1972) which more successfully accounts for variations in melt composition than does a model which considers the melt to be composed of simple oxides which mix ideally. By using a variety of pyroxene melt relations, several pyroxene-melt and low-Ca pyroxene-high-Ca pyroxene geothermometers are developed which have internally consistant precisions of approximately + or - 20 C. Finally, it is noted that these equations may have application in modeling the evolution of mineral compositions during differentiation of basaltic magmas.

Observations and modeling of ocean-induced melt beneath Petermann Glacier Ice Shelf in northwestern Greenland

NASA Astrophysics Data System (ADS)

Cai, Cilan; Rignot, Eric; Menemenlis, Dimitris; Nakayama, Yoshihiro

2017-08-01

We update observationally based estimates of subaqueous melt, Qm, beneath Petermann Glacier Ice Shelf (PGIS), Greenland, and model its sensitivity to oceanic thermal forcing, TF, and subglacial runoff, Qsg, using the Massachusetts Institute of Technology general circulation model (MITgcm), in a two-dimensional domain, with 20 m vertical and 40 m horizontal resolution at the grounding line. We adjust the drag coefficient to match the observationally based Qm. With the inclusion of Qsg, the maximum melt rate (Qmmax) is 2 times larger in summer and 1/3 larger annually than in winter. Qmmax increases above linear with TF and below linear with Qsg. We estimate that Qmmax increased by 24% (+8.1 m/yr) beneath PGIS from the 1990s to the 2000s from a 0.21°C warming in ocean temperature and a doubling in Qsg, hence contributing to its thinning. If the PGIS is removed, we estimate that the modeled melt rate near the grounding line will increase 13-16 times.

High Resolution Melting (HRM) applied to wine authenticity.

PubMed

Pereira, Leonor; Gomes, Sónia; Castro, Cláudia; Eiras-Dias, José Eduardo; Brazão, João; Graça, António; Fernandes, José R; Martins-Lopes, Paula

2017-02-01

Wine authenticity methods are in increasing demand mainly in Denomination of Origin designations. The DNA-based methodologies are a reliable means of tracking food/wine varietal composition. The main aim of this work was the study of High Resolution Melting (HRM) application as a screening method for must and wine authenticity. Three sample types (leaf, must and wine) were used to validate the three developed HRM assays (Vv1-705bp; Vv2-375bp; and Vv3-119bp). The Vv1 HRM assay was only successful when applied to leaf and must samples. The Vv2 HRM assay successfully amplified all sample types, allowing genotype discrimination based on melting temperature values. The smallest amplicon, Vv3, produced a coincident melting curve shape in all sample types (leaf and wine) with corresponding genotypes. This study presents sensitive, rapid and efficient HRM assays applied for the first time to wine samples suitable for wine authenticity purposes. Copyright © 2016 Elsevier Ltd. All rights reserved.

Integral equation theory study on the phase separation in star polymer nanocomposite melts.

PubMed

Zhao, Lei; Li, Yi-Gui; Zhong, Chongli

2007-10-21

The polymer reference interaction site model theory is used to investigate phase separation in star polymer nanocomposite melts. Two kinds of spinodal curves were obtained: classic fluid phase boundary for relatively low nanoparticle-monomer attraction strength and network phase boundary for relatively high nanoparticle-monomer attraction strength. The network phase boundaries are much more sensitive with nanoparticle-monomer attraction strength than the fluid phase boundaries. The interference among the arm number, arm length, and nanoparticle-monomer attraction strength was systematically investigated. When the arm lengths are short, the network phase boundary shows a marked shift toward less miscibility with increasing arm number. When the arm lengths are long enough, the network phase boundaries show opposite trends. There exists a crossover arm number value for star polymer nanocomposite melts, below which the network phase separation is consistent with that of chain polymer nanocomposite melts. However, the network phase separation shows qualitatively different behaviors when the arm number is larger than this value.

Simultaneous mutation detection of three homoeologous genes in wheat by High Resolution Melting analysis and Mutation Surveyor.

PubMed

Dong, Chongmei; Vincent, Kate; Sharp, Peter

2009-12-04

TILLING (Targeting Induced Local Lesions IN Genomes) is a powerful tool for reverse genetics, combining traditional chemical mutagenesis with high-throughput PCR-based mutation detection to discover induced mutations that alter protein function. The most popular mutation detection method for TILLING is a mismatch cleavage assay using the endonuclease CelI. For this method, locus-specific PCR is essential. Most wheat genes are present as three similar sequences with high homology in exons and low homology in introns. Locus-specific primers can usually be designed in introns. However, it is sometimes difficult to design locus-specific PCR primers in a conserved region with high homology among the three homoeologous genes, or in a gene lacking introns, or if information on introns is not available. Here we describe a mutation detection method which combines High Resolution Melting (HRM) analysis of mixed PCR amplicons containing three homoeologous gene fragments and sequence analysis using Mutation Surveyor software, aimed at simultaneous detection of mutations in three homoeologous genes. We demonstrate that High Resolution Melting (HRM) analysis can be used in mutation scans in mixed PCR amplicons containing three homoeologous gene fragments. Combining HRM scanning with sequence analysis using Mutation Surveyor is sensitive enough to detect a single nucleotide mutation in the heterozygous state in a mixed PCR amplicon containing three homoeoloci. The method was tested and validated in an EMS (ethylmethane sulfonate)-treated wheat TILLING population, screening mutations in the carboxyl terminal domain of the Starch Synthase II (SSII) gene. Selected identified mutations of interest can be further analysed by cloning to confirm the mutation and determine the genomic origin of the mutation. Polyploidy is common in plants. Conserved regions of a gene often represent functional domains and have high sequence similarity between homoeologous loci. The method described here is a useful alternative to locus-specific based methods for screening mutations in conserved functional domains of homoeologous genes. This method can also be used for SNP (single nucleotide polymorphism) marker development and eco-TILLING in polyploid species.

Fusion production of solid dispersions containing a heat-sensitive active ingredient by hot melt extrusion and Kinetisol dispersing.

PubMed

Dinunzio, James C; Brough, Chris; Hughey, Justin R; Miller, Dave A; Williams, Robert O; McGinity, James W

2010-02-01

Many techniques for the production of solid dispersions rely on elevated temperatures and prolonged material residence times, which can result in decomposition of temperature-sensitive components. In this study, hydrocortisone was used as a model temperature-sensitive active ingredient to study the effect of formulation and processing techniques as well as to characterize the benefits of KinetiSol Dispersing for the production of solid dispersions. Preformulation studies were conducted using differential scanning calorimetry and hot stage microscopy to identify optimum carriers for the production of amorphous solid dispersions. After identification, solid dispersions were prepared by hot melt extrusion and KinetiSol Dispersing, with material characterized by X-ray diffraction, dissolution and potency testing to evaluate physicochemical properties. Results from the preformulation studies showed that vinylacetate:vinylpyrrolidone (PVPVA) copolymer allowed for hydrocortisone dissolution within the carrier at temperatures as low as 160 degrees C, while hydroxypropyl methylcellulose required temperatures upward of 180 degrees C to facilitate solubilization. Low substituted hydroxypropyl cellulose, a high glass transition temperature control, showed that the material was unable to solubilize hydrocortisone. Manufacturing process control studies using hot melt extruded compositions of hydrocortisone and PVPVA showed that increased temperatures and residence times negatively impacted product potency due to decomposition. Using KinetiSol Dispersing to reduce residence time and to facilitate lower temperature processing, it was possible to produce solid dispersions with improved product potency. This study clearly demonstrated the importance of carrier selection to facilitate lower temperature processing, as well as the effect of residence time on product potency. Furthermore, KinetiSol Dispersing provided significant advantages over hot melt extrusion due to the reduced residence times and lower required processing temperatures. This allowed for the production of solid dispersions with enhanced product potency. Copyright (c) 2009 Elsevier B.V. All rights reserved.

Mass Balance of Multiyear Sea Ice in the Southern Beaufort Sea

DTIC Science & Technology

2015-09-30

1) Determination of the net growth and melt of multiyear (MY) sea ice during its transit through the southern Beaufort Sea 2) Identification of...which we refer to as the FGIV dataset. Analysis of melt processes from ice core and IMB data (Eicken) Through stratigraphic analysis of sea ice...samples that are brought back to shore were melted and used to determine profiles of salinity and stable isotope ratios. These data allow us to identify

Voronoi analysis of the short–range atomic structure in iron and iron–carbon melts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sobolev, Andrey; Mirzoev, Alexander

2015-08-17

In this work, we simulated the atomic structure of liquid iron and iron–carbon alloys by means of ab initio molecular dynamics. Voronoi analysis was used to highlight changes in the close environments of Fe atoms as carbon concentration in the melt increases. We have found, that even high concentrations of carbon do not affect short–range atomic order of iron atoms — it remains effectively the same as in pure iron melts.

Non-invasive prenatal diagnosis of multiple endocrine neoplasia type 2A using COLD-PCR combined with HRM genotyping analysis from maternal serum.

PubMed

Macher, Hada C; Martinez-Broca, Maria A; Rubio-Calvo, Amalia; Leon-Garcia, Cristina; Conde-Sanchez, Manuel; Costa, Alzenira; Navarro, Elena; Guerrero, Juan M

2012-01-01

The multiple endocrine neoplasia type 2A (MEN2A) is a monogenic disorder characterized by an autosomal dominant pattern of inheritance which is characterized by high risk of medullary thyroid carcinoma in all mutation carriers. Although this disorder is classified as a rare disease, the patients affected have a low life quality and a very expensive and continuous treatment. At present, MEN2A is diagnosed by gene sequencing after birth, thus trying to start an early treatment and by reduction of morbidity and mortality. We first evaluated the presence of MEN2A mutation (C634Y) in serum of 25 patients, previously diagnosed by sequencing in peripheral blood leucocytes, using HRM genotyping analysis. In a second step, we used a COLD-PCR approach followed by HRM genotyping analysis for non-invasive prenatal diagnosis of a pregnant woman carrying a fetus with a C634Y mutation. HRM analysis revealed differences in melting curve shapes that correlated with patients diagnosed for MEN2A by gene sequencing analysis with 100% accuracy. Moreover, the pregnant woman carrying the fetus with the C634Y mutation revealed a melting curve shape in agreement with the positive controls in the COLD-PCR study. The mutation was confirmed by sequencing of the COLD-PCR amplification product. In conclusion, we have established a HRM analysis in serum samples as a new primary diagnosis method suitable for the detection of C634Y mutations in MEN2A patients. Simultaneously, we have applied the increase of sensitivity of COLD-PCR assay approach combined with HRM analysis for the non-invasive prenatal diagnosis of C634Y fetal mutations using pregnant women serum.

Scale/Analytical Analyses of Freezing and Convective Melting with Internal Heat Generation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ali S. Siahpush; John Crepeau; Piyush Sabharwall

2013-07-01

Using a scale/analytical analysis approach, we model phase change (melting) for pure materials which generate constant internal heat generation for small Stefan numbers (approximately one). The analysis considers conduction in the solid phase and natural convection, driven by internal heat generation, in the liquid regime. The model is applied for a constant surface temperature boundary condition where the melting temperature is greater than the surface temperature in a cylindrical geometry. The analysis also consider constant heat flux (in a cylindrical geometry).We show the time scales in which conduction and convection heat transfer dominate.

Melting and Vaporization of the 1223 Phase in the System (Tl-Pb-Ba-Sr-Ca-Cu-O)

PubMed Central

Cook, L. P.; Wong-Ng, W.; Paranthaman, P.

1996-01-01

The melting and vaporization of the 1223 [(Tl,Pb):(Ba,Sr):Ca:Cu] oxide phase in the system (Tl-Pb-Ba-Sr-Ca-Cu-O) have been investigated using a combination of dynamic methods (differential thermal analysis, thermogravimetry, effusion) and post-quenching characterization techniques (powder x-ray diffraction, scanning electron microscopy, energy dispersive x-ray spectrometry). Vaporization rates, thermal events, and melt compositions were followed as a function of thallia loss from a 1223 stoichiometry. Melting and vaporization equilibria of the 1223 phase are complex, with as many as seven phases participating simultaneously. At a total pressure of 0.1 MPa the 1223 phase was found to melt completely at (980 ± 5) °C in oxygen, at a thallia partial pressure (pTl2O) of (4.6 ± 0.5) kPa, where the quoted uncertainties are standard uncertainties, i.e., 1 estimated standard deviation. The melting reaction involves five other solids and a liquid, nominally as follows: 1223→1212+(Ca,Sr)2CuO3+(Sr,Ca)CuO2+BaPbO3+(Ca,Sr)O+Liquid Stoichiometries of the participating phases have been determined from microchemical analysis, and substantial elemental substitution on the 1212 and 1223 crystallographic sites is indicated. The 1223 phase occurs in equilibrium with liquids from its melting point down to at least 935 °C. The composition of the lowest melting liquid detected for the bulk compositions of this study has been measured using microchemical analysis. Applications to the processing of superconducting wires and tapes are discussed. PMID:27805086

Hybrid analysis (barcode-high resolution melting) for authentication of Thai herbal products, Andrographis paniculata (Burm.f.) Wall.ex Nees.

PubMed

Osathanunkul, Maslin; Suwannapoom, Chatmongkon; Khamyong, Nuttaluck; Pintakum, Danupol; Lamphun, Santisuk Na; Triwitayakorn, Kanokporn; Osathanunkul, Kitisak; Madesis, Panagiotis

2016-01-01

Andrographis paniculata Nees is a medicinal plant with multiple pharmacological properties. It has been used over many centuries as a household remedy. A. paniculata products sold on the markets are in processed forms so it is difficult to authenticate. Therefore buying the herbal products poses a high-risk of acquiring counterfeited, substituted and/or adulterated products. Due to these issues, a reliable method to authenticate products is needed. High resolution melting analysis coupled with DNA barcoding (Bar-HRM) was applied to detect adulteration in commercial herbal products. The rbcL barcode was selected to use in primers design for HRM analysis to produce standard melting profile of A. paniculata species. DNA of the tested commercial products was isolated and their melting profiles were then generated and compared with the standard A. paniculata. The melting profiles of the rbcL amplicons of the three closely related herbal species (A. paniculata, Acanthus ebracteatus and Rhinacanthus nasutus) are clearly separated so that they can be distinguished by the developed method. The method was then used to authenticate commercial herbal products. HRM curves of all 10 samples tested are similar to A. paniculata which indicated that all tested products were contained the correct species as labeled. The method described in this study has been proved to be useful in aiding identification and/or authenticating A. paniculata. This Bar-HRM analysis has allowed us easily to determine the A. paniculata species in herbal products on the markets even they are in processed forms. We propose the use of DNA barcoding combined with High Resolution Melting analysis for authenticating of Andrographis paniculata products.The developed method can be used regardless of the type of the DNA template (fresh or dried tissue, leaf, and stem).rbcL region was chosen for the analysis and work well with our samplesWe can easily determine the A. paniculata species in herbal products tested. Abbreviations used: bp: Base pair, Tm: Melting temperature.

Modification of gray iron produced by induction melting with barium strontium

NASA Astrophysics Data System (ADS)

Modzelevskaya, G.; Feoktistov, A. V.; Selyanin, I. F.; Kutsenko, A. I.; Kutsenko, A. A.

2016-09-01

The article provides analysis of results of gray iron experimental melts in induction furnace and the following melt modification with barium-strontium carbonate (BSC-2). It is shown that modification positively affects mechanical and casting properties and as-cast iron structure. It was established that BSC-2 granulated immediately prior to use has greater impact on melt than BSC-2 of the same faction, supplied by the manufacturer.

Numerical and experimental investigation of melting with internal heat generation within cylindrical enclosures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amber Shrivastava; Brian Williams; Ali S. Siahpush

2014-06-01

There have been significant efforts by the heat transfer community to investigate the melting phenomenon of materials. These efforts have included the analytical development of equations to represent melting, numerical development of computer codes to assist in modeling the phenomena, and collection of experimental data. The understanding of the melting phenomenon has application in several areas of interest, for example, the melting of a Phase Change Material (PCM) used as a thermal storage medium as well as the melting of the fuel bundle in a nuclear power plant during an accident scenario. The objective of this research is two-fold. Firstmore » a numerical investigation, using computational fluid dynamics (CFD), of melting with internal heat generation for a vertical cylindrical geometry is presented. Second, to the best of authors knowledge, there are very limited number of engineering experimental results available for the case of melting with Internal Heat Generation (IHG). An experiment was performed to produce such data using resistive, or Joule, heating as the IHG mechanism. The numerical results are compared against the experimental results and showed favorable correlation. Uncertainties in the numerical and experimental analysis are discussed. Based on the numerical and experimental analysis, recommendations are made for future work.« less

Formation of nano/micro-dispersions with improved dissolution properties upon dispersion of ritonavir melt extrudate in aqueous media.

PubMed

Tho, Ingunn; Liepold, Bernd; Rosenberg, Joerg; Maegerlein, Markus; Brandl, Martin; Fricker, Gert

2010-04-16

The objective of the study was to characterise the aqueous dispersions of ritonavir melt extrudates. More specifically to look into the particular system formed when melt extrudate of a poorly soluble drug dissolved in a hydrophilic polymer matrix containing a surfactant is dispersed in an aqueous medium. Melt extrudates with and without ritonavir were studied. The drug containing extrudate was confirmed to be molecular dispersions of drug in a polymer/surfactant matrix. Particulate dispersions were formed in water from both drug and placebo extrudates. The dispersions were investigated with respect to mean particle size and particle size distribution (photon correlation spectroscopy and optical particle counting), surface charge (zeta potential), particle composition (ultracentrifugation), tendency to form aggregates and precipitate (turbidity), in vitro dissolution rate and drug release. It was concluded that dispersion of melt extrudates in aqueous medium give rise to nano/micro-dispersions. The stability of the nano/micro-dispersion is sensitive to anions and may be subjected to association/aggregation/flocculation as time proceeds after preparation of dispersion. Melt extrudate showed improved dissolution rate and drug release properties compared to crystalline raw material. From studies of single components and physical mixtures of the formulation composition it can be concluded that the drug delivery system itself, namely solid dispersion prepared by melt extrusion technology, plays a key role for the formation of the observed particles. 2010 Elsevier B.V. All rights reserved.

A 400-Year Ice Core Melt Layer Record of Summertime Warming in the Alaska Range

NASA Astrophysics Data System (ADS)

Winski, Dominic; Osterberg, Erich; Kreutz, Karl; Wake, Cameron; Ferris, David; Campbell, Seth; Baum, Mark; Bailey, Adriana; Birkel, Sean; Introne, Douglas; Handley, Mike

2018-04-01

Warming in high-elevation regions has societally important impacts on glacier mass balance, water resources, and sensitive alpine ecosystems, yet very few high-elevation temperature records exist from the middle or high latitudes. While a variety of paleoproxy records provide critical temperature records from low elevations over recent centuries, melt layers preserved in alpine glaciers present an opportunity to develop calibrated, annually resolved temperature records from high elevations. Here we present a 400-year temperature proxy record based on the melt layer stratigraphy of two ice cores collected from Mt. Hunter in Denali National Park in the central Alaska Range. The ice core record shows a sixtyfold increase in water equivalent total annual melt between the preindustrial period (before 1850 Common Era) and present day. We calibrate the melt record to summer temperatures based on weather station data from the ice core drill site and find that the increase in melt production represents a summer warming rate of at least 1.92 ± 0.31°C per century during the last 100 years, exceeding rates of temperature increase at most low-elevation sites in Alaska. The Mt. Hunter melt layer record is significantly (p < 0.05) correlated with surface temperatures in the central tropical Pacific through a Rossby wave-like pattern that enhances high temperatures over Alaska. Our results show that rapid alpine warming has taken place in the Alaska Range for at least a century and that conditions in the tropical oceans contribute to this warming.

Transient Torque Method: A Fast and Nonintrusive Technique to Simultaneously Determine Viscosity and Electrical Conductivity of Semiconducting and Metallic Melts

NASA Technical Reports Server (NTRS)

Li, C.; Ban, H.; Lin, B.; Scripa, R. N.; Su, C.-H.; Lehoczky, S. L.; Zhu, S.

2004-01-01

A transient torque method was developed to rapidly and simultaneously determine the viscosity and electrical conductivity of liquid metals and molten semiconductors. The experimental setup of the transient torque method is similar to that of the oscillation cup method. The melt sample is sealed inside a fused silica ampoule, and the ampoule is suspended by a long quartz fiber to form a torsional oscillation system. A rotating magnetic field is used to induce a rotating flow in the conductive melt, which causes the ampoule to rotate around its vertical axis. A sensitive angular detector is used to measure the deflection angle of the ampoule. Based on the transient behavior of the deflection angle as the rotating magnetic field is applied, the electrical conductivity and viscosity of the melt can be obtained simultaneously by numerically fitting the data to a set of governing equations. The transient torque viscometer was applied successfully to measure the viscosity and electrical conductivity of high purity mercury at 53.4 C. The results were in excellent agreement with published data. The method is nonintrusive; capable of rapid measurement of the viscosity of toxic, high vapor pressure melts at elevated temperatures. In addition, the transient torque viscometer can also be operated as an oscillation cup viscometer to measure just the viscosity of the melt or as a rotating magnetic field method to determine the electrical conductivity of a melt or a solid if desired.

Two phase modeling of nanofluid flow in existence of melting heat transfer by means of HAM

NASA Astrophysics Data System (ADS)

Sheikholeslami, M.; Jafaryar, M.; Bateni, K.; Ganji, D. D.

2018-02-01

In this article, Buongiorno Model is applied for investigation of nanofluid flow over a stretching plate in existence of magnetic field. Radiation and Melting heat transfer are taken into account. Homotopy analysis method (HAM) is selected to solve ODEs which are obtained from similarity transformation. Roles of Brownian motion, thermophoretic parameter, Hartmann number, porosity parameter, Melting parameter and Eckert number are presented graphically. Results indicate that nanofluid velocity and concentration enhance with rise of melting parameter. Nusselt number reduces with increase of porosity and melting parameters.

Turbulent convection driven by internal radiative heating of melt ponds on sea ice

NASA Astrophysics Data System (ADS)

Wells, Andrew; Langton, Tom; Rees Jones, David; Moon, Woosok

2016-11-01

The melting of Arctic sea ice is strongly influenced by heat transfer through melt ponds which form on the ice surface. Melt ponds are internally heated by the absorption of incoming radiation and cooled by surface heat fluxes, resulting in vigorous buoyancy-driven convection in the pond interior. Motivated by this setting, we conduct two-dimensional direct-numerical simulations of the turbulent convective flow of a Boussinesq fluid between two horizontal boundaries, with internal heating predicted from a two-stream radiation model. A linearised thermal boundary condition describes heat exchange with the overlying atmosphere, whilst the lower boundary is isothermal. Vertically asymmetric convective flow modifies the upper surface temperature, and hence controls the partitioning of the incoming heat flux between emission at the upper and lower boundaries. We determine how the downward heat flux into the ice varies with a Rayleigh number based on the internal heating rate, the flux ratio of background surface cooling compared to internal heating, and a Biot number characterising the sensitivity of surface fluxes to surface temperature. Thus we elucidate the physical controls on heat transfer through Arctic melt ponds which determine the fate of sea ice in the summer.

Incorporating convection into one-dimensional solute redistribution during crystal growth from the melt I. The steady-state solution

NASA Astrophysics Data System (ADS)

Yen, C. T.; Tiller, W. A.

1992-03-01

A one-dimensional mathematical analysis is made of the redistribution of solute which occurs during crystal growth from a convected melt. In this analysis, the important contribution from lateral melt convection to one-dimensional solute redistribution analysis is taken into consideration via an annihilation/creation term in the one-dimensional solute transport equation. Calculations of solute redistribution under steady-state conditions have been carried out analytically. It is found that this new solute redistribution model overcomes several weaknesses that occur when applying the Burton, Prim and Slichter solute segregation equation (1953) in real melt growth situations. It is also found that, with this correction, the diffusion coefficients for solute's in liquid silicon are now found to be in the same range as other liquid metal diffusion coefficients.

Large Amplitude Oscillatory Shear (LAOS) of Acrylic Emulsion-Based Pressure Sensitive Adhesives (PSAs)

NASA Astrophysics Data System (ADS)

Zhang, Sipei; Nakatani, Alan; Griffith, William

Large Amplitude Oscillatory Shear (LAOS) testing has recently taken on renewed interest in the rheological community. It is a very useful tool to probe the viscoelastic response of materials in the non-linear regime. Much of the discussion on polymers in the LAOS field has focused on melts in or near the terminal flow regime. Here we present a LAOS study conducted on a commercial rheometer for acrylic emulsion-based pressure sensitive adhesive (PSA) films in the plateau regime. The films behaved qualitatively similar over an oscillation frequency range of 0.5-5 rad/s. From Fourier transform analysis, the fifth or even the seventh order harmonic could be observed at large applied strains. From stress decomposition analysis or Lissajous curves, inter-cycle elastic softening, or type I behavior, was observed for all films as the strain increases, while intra-cycle strain hardening occurred at strains in the LAOS regime. Overall, as acid content increases, it was found that the trend in elasticity under large applied strains agreed very well with the trend in cohesive strength of the films.

Experimental constraints on the degree of melting beneath tectonic plates

NASA Astrophysics Data System (ADS)

Clark, A. N.; Lesher, C. E.

2017-12-01

Determining the volume and geometric distribution of silicate melts is fundamentally important to understand the current structure of the Earth as well as the dynamics of the Earth's interior. Regions in the upper mantle and crust that have lower velocities than the 1D global average are commonly attributed to the presence of silicate melts. Constraining melt fraction and distribution from seismic data requires a robust equation of state for silicate melts. Commonly, silicate melts are modeled at high pressure using equations of state developed for crystalline materials (e.g. the Birch-Murnaghan equation of state). However, amorphous silicates (glasses and melts), which lack long-range ordering, violate Birch's law at high pressures and high temperatures (Clark et al., 2016). We present a new model for seismic velocity reductions that accounts for the violation of Birch's law (anomalous compressibility) observed in amorphous silicates, rendering compressional wave velocities more sensitive to melt fraction and distribution than previous estimates. Forward modeling that combines our experimental data with the analytical solution of Takei (2002) predicts comparable velocity reductions for compressional and shear waves for partially molten mantle. Additionally, models that use crystalline equations of state to determine melt fraction at high pressure may overestimate melt fraction by 20% at pressures corresponding to the lithosphere-asthenosphere boundary (LAB) with the overestimation increasing with depth (e.g. a factor of 2 at the transition zone). By applying our results to recent seismic studies below the western Pacific plate that have reported low velocity regions associated with the lithosphere - asthenosphere boundary (LAB), we predict melt present at <5% distributed in near-textural equilibrium. These findings reconcile seismic observations for the LAB regionally and locally, and favor models of strong coupling across the LAB rather than melt channeling due to shear deformation. Clark, A. N., Lesher, C. E., Jacobsen, S. D., and Wang, Y., 2016, Journal of Geophysical Research: Solid Earth, v. 121, no. 6, p. 4232-4248. Takei, Y., 2002, Journal of Geophysical Research: Solid Earth (1978-2012), v. 107, no. B2, p. 6-12.

Stagnation-Point Shielding by Melting and Vaporization

NASA Technical Reports Server (NTRS)

Roberts, Leonard

1959-01-01

An approximate theoretical analysis was made of the shielding mechanism whereby the rate of heat transfer to the forward stagnation point of blunt bodies is reduced by melting and evaporation. General qualitative results are given and a numerical example, the melting and evaporation of ice, is presented and discussed in detail.

Reactive transport in a partially molten system with binary solid solution

NASA Astrophysics Data System (ADS)

Jordan, J.; Hesse, M. A.

2017-12-01

Melt extraction from the Earth's mantle through high-porosity channels is required to explain the composition of the oceanic crust. Feedbacks from reactive melt transport are thought to localize melt into a network of high-porosity channels. Recent studies invoke lithological heterogeneities in the Earth's mantle to seed the localization of partial melts. Therefore, it is necessary to understand the reaction fronts that form as melt flows across the lithological interface of a heterogeneity and the background mantle. Simplified melting models of such systems aide in the interpretation and formulation of larger scale mantle models. Motivated by the aforementioned facts, we present a chromatographic analysis of reactive melt transport across lithological boundaries, using theory for hyperbolic conservation laws. This is an extension of well-known linear trace element chromatography to the coupling of major elements and energy transport. Our analysis allows the prediction of the feedbacks that arise in reactive melt transport due to melting, freezing, dissolution and precipitation for frontal reactions. This study considers the simplified case of a rigid, partially molten porous medium with binary solid solution. As melt traverses a lithological contact-modeled as a Riemann problem-a rich set of features arise, including a reacted zone between an advancing reaction front and partial chemical preservation of the initial contact. Reactive instabilities observed in this study originate at the lithological interface rather than along a chemical gradient as in most studies of mantle dynamics. We present a regime diagram that predicts where reaction fronts become unstable, thereby allowing melt localization into high-porosity channels through reactive instabilities. After constructing the regime diagram, we test the one-dimensional hyperbolic theory against two-dimensional numerical experiments. The one-dimensional hyperbolic theory is sufficient for predicting the qualitative behavior of reactive melt transport simulations conducted in two-dimensions. The theoretical framework presented can be extended to more complex and realistic phase behavior, and is therefore a useful tool for understanding nonlinear feedbacks in reactive melt transport problems relevant to mantle dynamics.

Optical Benson: Following the Impact of Melt Season Progression Using Landsat and Sentinel 2 - Snow Zone Formation Imaged

NASA Astrophysics Data System (ADS)

Fahnestock, M. A.; Shuman, C. A.; Alley, K. E.

2017-12-01

Snow pit observations on a glaciologically-focussed surface traverse in Greenland allowed Benson [1962, SIPRE (now CRREL) Research Report 70] to define a series of snow zones based on the extent of post-depositional diagenesis of the snowpack. At high elevations, Benson found fine-grained "dry snow" where melt (at that time) was absent year-round, followed down-elevation by a "percolation zone" where surface melt penetrated the snowpack, then a "wet snow zone" where firn became saturated during the peak of the melt season, and finally "superimposed ice" and "bare ice" zones where refrozen surface melt and glacier ice were exposed in the melt season. These snow zones can be discriminated in winter synthetic aperture radar (SAR) imagery of the ice sheet (e.g. Fahnestock et al. 2001), but summer melt reduces radar backscatter and makes it difficult to follow the progression of diagenesis beyond the initial indications of surface melting. While some of the impacts of surface melt (especially bands of blue water-saturated firn) are observed from time to time in optical satellite imagery, it has only become possible to map effects of melt over the course of a summer season with the advent of large-data analysis tools such as Google Earth Engine and the inclusion of Landsat and Sentinel-2 data streams in these tools. A map of the maximum extent of this blue saturated zone through the 2016 melt season is shown in the figure. This image is a true color (RGB) composite, but each pixel in the image shows the color of the surface when the "blueness" of the pixel was at a maximum. This means each pixel can be from a different satellite image acquisition than adjacent pixels - but it also means that the maximum extent of the saturated firn (Benson's wet snow zone) is visible. Also visible are percolation, superimposed and bare ice zones. This analysis, using Landsat 8 Operational Land Imager data, was performed using Google Earth Engine to access and analyze the entire melt season's data. Similar spatial analyses for other years in the record, combined with pixel-by-pixel analysis of each time series through the year, can be used to track the progression and overall effect of the melt season in each year. This view of the progression of a melt season provides a new set of tools to help understand changing surface conditions for ice sheets and glaciers globally.

A new method for detection and discrimination of Pepino mosaic virus isolates using high resolution melting analysis of the triple gene block 3.

PubMed

Hasiów-Jaroszewska, Beata; Komorowska, Beata

2013-10-01

Diagnostic methods distinguished different Pepino mosaic virus (PepMV) genotypes but the methods do not detect sequence variation in particular gene segments. The necrotic and non-necrotic isolates (pathotypes) of PepMV share a 99% sequence similarity. These isolates differ from each other at one nucleotide site in the triple gene block 3. In this study, a combination of real-time reverse transcription polymerase chain reaction and high resolution melting curve analysis of triple gene block 3 was developed for simultaneous detection and differentiation of PepMV pathotypes. The triple gene block 3 region carrying a transition A → G was amplified using two primer pairs from twelve virus isolates, and was subjected to high resolution melting curve analysis. The results showed two distinct melting curve profiles related to each pathotype. The results also indicated that the high resolution melting method could readily differentiate between necrotic and non-necrotic PepMV pathotypes. Copyright © 2013 Elsevier B.V. All rights reserved.

FIBER OPTIC BIOSENSOR FOR DNA DAMAGE

EPA Science Inventory

This paper describes a fiber optic biosensor for the rapid and sensitive detection of radiation-induced or chemically-induced oxidative DNA damage. The assay is based on the hybridization and temperature-induced dissociation (melting curves) of synthetic oligonucleotides. The...

SYTO9 and SYBR GREEN1 with a high-resolution melting analysis for prenatal diagnosis of β⁰-thalassemia/hemoglobin-E.

PubMed

Pornprasert, Sakorn; Sukunthamala, Kanyakan

2010-11-01

The β⁰-thalassemia/Hb-E causes a wide range of severe conditions. A high medical cost is incurred in severe cases. Thus, the prevention of new cases of β⁰-thalassemia/Hb-E is required. The aim of this study is to use the SYTO9 and SYBR GREEN1 high-resolution melting (HRM) analysis for prenatal diagnosis of β⁰-thalassemia/Hb-E. DNA samples were extracted from amniotic fluid or cord blood of 11 pregnancies whose fetuses were at risk for β-thalassemia/Hb-E. PCR products from multiplex amplification refractory mutation system PCR for the detection of β⁰-thalassemia mutations at codons 17(A>T), 41/42(-TCTT), and 71/72(+A) and from amplification refractory mutation system PCR for the detection of Hb-E were characterized by SYTO9 HRM analysis. Moreover, β⁰-thalassemia 3.5- kb deletion was detected using real-time PCR with SYBR GREEN1 HRM analysis. Seven of 11 fetuses (64%) were diagnosed as β⁰-thalassemia/Hb-E (4 fetuses with mutation at codon 17, 2 with mutation at codon 41/42, and 1 with 3.5- kb deletion). Results from HRM analysis were completely consistent with those from fetal blood samplings analyzed at the time of delivery or pregnancy termination using HPLC. Therefore, the HRM analysis is easy to use. It is simple, flexible, non-destructive and has superb sensitivity and specificity. This approach might facilitate the laboratory diagnosis and genetic counseling for regions with a high prevalence of β⁰-thalassemia/Hb-E. © 2010 John Wiley & Sons A/S.

The refreezing of melt ponds on Arctic sea ice

NASA Astrophysics Data System (ADS)

Flocco, Daniela; Feltham, Daniel L.; Bailey, Eleanor; Schroeder, David

2015-02-01

The presence of melt ponds on the surface of Arctic sea ice significantly reduces its albedo, inducing a positive feedback leading to sea ice thinning. While the role of melt ponds in enhancing the summer melt of sea ice is well known, their impact on suppressing winter freezing of sea ice has, hitherto, received less attention. Melt ponds freeze by forming an ice lid at the upper surface, which insulates them from the atmosphere and traps pond water between the underlying sea ice and the ice lid. The pond water is a store of latent heat, which is released during refreezing. Until a pond freezes completely, there can be minimal ice growth at the base of the underlying sea ice. In this work, we present a model of the refreezing of a melt pond that includes the heat and salt balances in the ice lid, trapped pond, and underlying sea ice. The model uses a two-stream radiation model to account for radiative scattering at phase boundaries. Simulations and related sensitivity studies suggest that trapped pond water may survive for over a month. We focus on the role that pond salinity has on delaying the refreezing process and retarding basal sea ice growth. We estimate that for a typical sea ice pond coverage in autumn, excluding the impact of trapped ponds in models overestimates ice growth by up to 265 million km3, an overestimate of 26%.

Fukushima Daiichi Unit 1 Ex-Vessel Prediction: Core Concrete Interaction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Robb, Kevin R; Farmer, Mitchell; Francis, Matthew W

Lower head failure and corium concrete interaction were predicted to occur at Fukushima Daiichi Unit 1 (1F1) by several different system-level code analyses, including MELCOR v2.1 and MAAP5. Although these codes capture a wide range of accident phenomena, they do not contain detailed models for ex-vessel core melt behavior. However, specialized codes exist for analysis of ex-vessel melt spreading (e.g., MELTSPREAD) and long-term debris coolability (e.g., CORQUENCH). On this basis, an analysis was carried out to further evaluate ex-vessel behavior for 1F1 using MELTSPREAD and CORQUENCH. Best-estimate melt pour conditions predicted by MELCOR v2.1 and MAAP5 were used as input.more » MELTSPREAD was then used to predict the spatially dependent melt conditions and extent of spreading during relocation from the vessel. The results of the MELTSPREAD analysis are reported in a companion paper. This information was used as input for the long-term debris coolability analysis with CORQUENCH.« less

High-resolution melting genotyping of Enterococcus faecium based on multilocus sequence typing derived single nucleotide polymorphisms.

PubMed

Tong, Steven Y C; Xie, Shirley; Richardson, Leisha J; Ballard, Susan A; Dakh, Farshid; Grabsch, Elizabeth A; Grayson, M Lindsay; Howden, Benjamin P; Johnson, Paul D R; Giffard, Philip M

2011-01-01

We have developed a single nucleotide polymorphism (SNP) nucleated high-resolution melting (HRM) technique to genotype Enterococcus faecium. Eight SNPs were derived from the E. faecium multilocus sequence typing (MLST) database and amplified fragments containing these SNPs were interrogated by HRM. We tested the HRM genotyping scheme on 85 E. faecium bloodstream isolates and compared the results with MLST, pulsed-field gel electrophoresis (PFGE) and an allele specific real-time PCR (AS kinetic PCR) SNP typing method. In silico analysis based on predicted HRM curves according to the G+C content of each fragment for all 567 sequence types (STs) in the MLST database together with empiric data from the 85 isolates demonstrated that HRM analysis resolves E. faecium into 231 "melting types" (MelTs) and provides a Simpson's Index of Diversity (D) of 0.991 with respect to MLST. This is a significant improvement on the AS kinetic PCR SNP typing scheme that resolves 61 SNP types with D of 0.95. The MelTs were concordant with the known ST of the isolates. For the 85 isolates, there were 13 PFGE patterns, 17 STs, 14 MelTs and eight SNP types. There was excellent concordance between PFGE, MLST and MelTs with Adjusted Rand Indices of PFGE to MelT 0.936 and ST to MelT 0.973. In conclusion, this HRM based method appears rapid and reproducible. The results are concordant with MLST and the MLST based population structure.

REVIEWS OF TOPICAL PROBLEMS: Universal viscosity growth in metallic melts at megabar pressures: the vitreous state of the Earth's inner core

NASA Astrophysics Data System (ADS)

Brazhkin, Vadim V.; Lyapin, A. G.

2000-05-01

Experimental data on and theoretical models for the viscosity of various types of liquids and melts under pressure are reviewed. Experimentally, the least studied melts are those of metals, whose viscosity is considered to be virtually constant along the melting curve. The authors' new approach to the viscosity of melts involves the measurement of the grain size in solidified samples. Measurements on liquid metals at pressures up to 10 GPa using this method show, contrary to the empirical approach, that the melt viscosity grows considerably along the melting curves. Based on the experimental data and on the critical analysis of current theories, a hypothesis of a universal viscosity behavior is introduced for liquids under pressure. Extrapolating the liquid iron results to the pressures and temperatures at the Earth's core reveals that the Earth's outer core is a very viscous melt with viscosity values ranging from 102 Pa s to 1011 Pa s depending on the depth. The Earth's inner core is presumably an ultraviscous (>1011 Pa s) glass-like liquid — in disagreement with the current idea of a crystalline inner core. The notion of the highly viscous interior of celestial bodies sheds light on many mysteries of planetary geophysics and astronomy. From the analysis of the pressure variation of the melting and glass-transition temperatures, an entirely new concept of a stable metallic vitreous state arises, calling for further experimental and theoretical study.

Fukushima Daiichi Unit 1 Uncertainty Analysis-Exploration of Core Melt Progression Uncertain Parameters-Volume II.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Denman, Matthew R.; Brooks, Dusty Marie

Sandia National Laboratories (SNL) has conducted an uncertainty analysi s (UA) on the Fukushima Daiichi unit (1F1) accident progression wit h the MELCOR code. Volume I of the 1F1 UA discusses the physical modeling details and time history results of the UA. Volume II of the 1F1 UA discusses the statistical viewpoint. The model used was developed for a previous accident reconstruction investigation jointly sponsored by the US Department of Energy (DOE) and Nuclear Regulatory Commission (NRC). The goal of this work was to perform a focused evaluation of uncertainty in core damage progression behavior and its effect on keymore » figures - of - merit (e.g., hydrogen production, fraction of intact fuel, vessel lower head failure) and in doing so assess the applicability of traditional sensitivity analysis techniques .« less

A simple model for the evolution of melt pond coverage on permeable Arctic sea ice

NASA Astrophysics Data System (ADS)

Popović, Predrag; Abbot, Dorian

2017-05-01

As the melt season progresses, sea ice in the Arctic often becomes permeable enough to allow for nearly complete drainage of meltwater that has collected on the ice surface. Melt ponds that remain after drainage are hydraulically connected to the ocean and correspond to regions of sea ice whose surface is below sea level. We present a simple model for the evolution of melt pond coverage on such permeable sea ice floes in which we allow for spatially varying ice melt rates and assume the whole floe is in hydrostatic balance. The model is represented by two simple ordinary differential equations, where the rate of change of pond coverage depends on the pond coverage. All the physical parameters of the system are summarized by four strengths that control the relative importance of the terms in the equations. The model both fits observations and allows us to understand the behavior of melt ponds in a way that is often not possible with more complex models. Examples of insights we can gain from the model are that (1) the pond growth rate is more sensitive to changes in bare sea ice albedo than changes in pond albedo, (2) ponds grow slower on smoother ice, and (3) ponds respond strongest to freeboard sinking on first-year ice and sidewall melting on multiyear ice. We also show that under a global warming scenario, pond coverage would increase, decreasing the overall ice albedo and leading to ice thinning that is likely comparable to thinning due to direct forcing. Since melt pond coverage is one of the key parameters controlling the albedo of sea ice, understanding the mechanisms that control the distribution of pond coverage will help improve large-scale model parameterizations and sea ice forecasts in a warming climate.

Anatexis at the roof of an oceanic magma chamber at IODP Site 1256 (equatorial Pacific): an experimental study

NASA Astrophysics Data System (ADS)

Erdmann, Martin; Fischer, Lennart A.; France, Lydéric; Zhang, Chao; Godard, Marguerite; Koepke, Jürgen

2015-04-01

Replenished axial melt lenses at fast-spreading mid-oceanic ridges may move upward and intrude into the overlying hydrothermally altered sheeted dikes, resulting in high-grade contact metamorphism with the potential to trigger anatexis in the roof rocks. Assumed products of this process are anatectic melts of felsic composition and granoblastic, two-pyroxene hornfels, representing the residue after partial melting. Integrated Ocean Drilling Program Expeditions 309, 312, and 335 at Site 1256 (eastern equatorial Pacific) sampled such a fossilized oceanic magma chamber. In this study, we simulated magma chamber roof rock anatectic processes by performing partial melting experiments using six different protoliths from the Site 1256 sheeted dike complex, spanning a lithological range from poorly to strongly altered basalts to partially or fully recrystallized granoblastic hornfels. Results show that extensively altered starting material lacking primary magmatic minerals cannot reproduce the chemistry of natural felsic rocks recovered in ridge environments, especially elements sensitive to hydrothermal alteration (e.g., K, Cl). Natural geochemical trends are reproduced through partial melting of moderately altered basalts from the lower sheeted dikes. Two-pyroxene hornfels, the assumed residue, were reproduced only at low melting degrees (<20 vol%). The overall amphibole absence in the experiments confirms the natural observation that amphibole is not produced during peak metamorphism. Comparing experimental products with the natural equivalents reveals that water activity ( aH2O) was significantly reduced during anatectic processes, mainly based on lower melt aluminum oxide and lower plagioclase anorthite content at lower aH2O. High silica melt at the expected temperature (1000-1050 °C; peak thermal overprint of two-pyroxene hornfels) could only be reproduced in the experimental series performed at aH2O = 0.1.

Temperature and composition dependencies of trace element partitioning - Olivine/melt and low-Ca pyroxene/melt

NASA Technical Reports Server (NTRS)

Colson, R. O.; Mckay, G. A.; Taylor, L. A.

1988-01-01

This paper presents a systematic thermodynamic analysis of the effects of temperature and composition on olivine/melt and low-Ca pyroxene/melt partitioning. Experiments were conducted in several synthetic basalts with a wide range of Fe/Mg, determining partition coefficients for Eu, Ca, Mn, Fe, Ni, Sm, Cd, Y, Yb, Sc, Al, Zr, and Ti and modeling accurately the changes in free energy for trace element exchange between crystal and melt as functions of the trace element size and charge. On the basis of this model, partition coefficients for olivine/melt and low-Ca pyroxene/melt can be predicted for a wide range of elements over a variety of basaltic bulk compositions and temperatures. Moreover, variations in partition coeffeicients during crystallization or melting can be modeled on the basis of changes in temperature and major element chemistry.

The Intensity, Directionality, and Statistics of Underwater Noise From Melting Icebergs

NASA Astrophysics Data System (ADS)

Glowacki, Oskar; Deane, Grant B.; Moskalik, Mateusz

2018-05-01

Freshwater fluxes from melting icebergs and glaciers are important contributors to both sea level rise and anomalies of seawater salinity in polar regions. However, the hazards encountered close to icebergs and glaciers make it difficult to quantify their melt rates directly, motivating the development of cryoacoustics as a remote sensing technique. Recent studies have shown a qualitative link between ice melting and the accompanying underwater noise, but the properties of this signal remain poorly understood. Here we examine the intensity, directionality, and temporal statistics of the underwater noise radiated by melting icebergs in Hornsund Fjord, Svalbard, using a three-element acoustic array. We present the first estimate of noise energy per unit area associated with iceberg melt and demonstrate its qualitative dependence on exposure to surface current. Finally, we show that the analysis of noise directionality and statistics makes it possible to distinguish iceberg melt from the glacier terminus melt.

Clean Sampling of an Englacial Conduit at Blood Falls, Antarctica - Some Experimental and Numerical Results

NASA Astrophysics Data System (ADS)

Kowalski, Julia; Francke, Gero; Feldmann, Marco; Espe, Clemens; Heinen, Dirk; Digel, Ilya; Clemens, Joachim; Schüller, Kai; Mikucki, Jill; Tulaczyk, Slawek M.; Pettit, Erin; Berry Lyons, W.; Dachwald, Bernd

2017-04-01

There is significant interest in sampling subglacial environments for geochemical and microbiological studies, yet those environments are typically difficult to access. Existing ice-drilling technologies make it cumbersome to maintain microbiologically clean access for sample acquisition and environmental stewardship of potentially fragile subglacial aquatic ecosystems. With the "IceMole", a minimally invasive, maneuverable subsurface ice probe, we have developed a clean glacial exploration technology for in-situ analysis and sampling of glacial ice and sub- and englacial materials. Its design is based on combining melting and mechanical stabilization, using an ice screw at the tip of the melting head to maintain firm contact between the melting head and the ice. The IceMole can change its melting direction by differential heating of the melting head and optional side wall heaters. Downward, horizontal and upward melting, as well as curve driving and penetration of particulate-ladden layers has already been demonstrated in several field tests. This maneuverability of the IceMole also necessitates a sophisticated on-board navigation system, capable of autonomous operations. Therefore, between 2012 and 2014, a more advanced probe was developed as part of the "Enceladus Explorer" (EnEx) project. The EnEx-IceMole offers systems for accurate positioning, based on in-ice attitude determination, acoustic positioning, ultrasonic obstacle and target detection, which is all integrated through a high-level sensor fusion algorithm. In December 2014, the EnEx-IceMole was used for clean access into a unique subglacial aquatic environment at Blood Falls, Antarctica, where an englacial brine sample was successfully obtained after about 17 meters of oblique melting. Particular attention was paid to clean protocols for sampling for geochemical and microbiological analysis. In this contribution, we will describe the general technological approach of the IceMole and report on the results of its deployment at Blood Falls. In contrast to conventional melting-probe applications, which can only melt vertically, the IceMole realized an oblique melting path to penetrate the englacial conduit. Experimental and numerical results on melting at oblique angles are rare. Besides reporting on the IceMole technology and the field deployment itself, we will compare and discuss the observed melting behavior with re-analysis results in the context of a recently developed numerical model. Finally, we will present our first steps in utilizing the model to infer on the ambient cryo-environment.

[Novel Approaches in DNA Methylation Studies - MS-HRM Analysis and Electrochemistry].

PubMed

Bartošík, M; Ondroušková, E

Cytosine methylation in DNA is an epigenetic mechanism regulating gene expression and plays a vital role in cell differentiation or proliferation. Tumor cells often exhibit aberrant DNA methylation, e.g. hypermethylation of tumor suppressor gene promoters. New methods, capable of determining methylation status of specific DNA sequences, are thus being developed. Among them, MS-HRM (methylation-specific high resolution melting) and electrochemistry offer relatively inexpensive instrumentation, fast assay times and possibility of screening multiple samples/DNA regions simultaneously. MS-HRM is due to its sensitivity and simplicity an interesting alternative to already established techniques, including methylation-specific PCR or bisulfite sequencing. Electrochemistry, when combined with suitable electroactive labels and electrode surfaces, has been applied in several unique strategies for discrimination of cytosines and methylcytosines. Both techniques were successfully tested in analysis of DNA methylation within promoters of important tumor suppressor genes and could thus help in achieving more precise diagnostics and prognostics of cancer. Aberrant methylation of promoters has already been described in hundreds of genes associated with tumorigenesis and could serve as important biomarker if new methods applicable into clinical practice are sufficiently advanced.Key words: DNA methylation - 5-methylcytosine - HRM analysis - melting temperature - DNA duplex - electrochemistry - nucleic acid hybridizationThis work was supported by MEYS - NPS I - LO1413.The authors declare they have no potential conflicts of interest concerning drugs, products, or services used in the study.The Editorial Board declares that the manuscript met the ICMJE recommendation for biomedical papers.Submitted: 6. 5. 2016Accepted: 16. 5. 2016.

Summary of the SeaRISE Project's Experiments on Modeled Ice-Sheet Contributions to Future Sea Level: Linearities and Non-linearities

NASA Astrophysics Data System (ADS)

Bindschadler, Robert

2013-04-01

The SeaRISE (Sea-level Response to Ice Sheet Evolution) project achieved ice-sheet model ensemble responses to a variety of prescribed changes to surface mass balance, basal sliding and ocean boundary melting. Greenland ice sheet models are more sensitive than Antarctic ice sheet models to likely atmospheric changes in surface mass balance, while Antarctic models are most sensitive to basal melting of its ice shelves. An experiment approximating the IPCC's RCP8.5 scenario produces first century contributions to sea level of 22.3 and 7.3 cm from Greenland and Antarctica, respectively, with a range among models of 62 and 17 cm, respectively. By 200 years, these projections increase to 53.2 and 23.4 cm, respectively, with ranges of 79 and 57 cm. The considerable range among models was not only in the magnitude of ice lost, but also in the spatial pattern of response to identical forcing. Despite this variation, the response of any single model to a large range in the forcing intensity was remarkably linear in most cases. Additionally, the results of sensitivity experiments to single types of forcing (i.e., only one of the surface mass balance, or basal sliding, or ocean boundary melting) could be summed to accurately predict any model's result for an experiment when multiple forcings were applied simultaneously. This suggests a limited amount of feedback through the ice sheet's internal dynamics between these types of forcing over the time scale of a few centuries (SeaRISE experiments lasted 500 years).

Snowmelt response to simulated warming across a large elevation gradient, southern Sierra Nevada, California

NASA Astrophysics Data System (ADS)

Musselman, Keith N.; Molotch, Noah P.; Margulis, Steven A.

2017-12-01

In a warmer climate, the fraction of annual meltwater produced at high melt rates in mountainous areas is projected to decline due to a contraction of the snow-cover season, causing melt to occur earlier and under lower energy conditions. How snowmelt rates, including extreme events relevant to flood risk, may respond to a range of warming over a mountain front is poorly known. We present a model sensitivity study of snowmelt response to warming across a 3600 m elevation gradient in the southern Sierra Nevada, USA. A snow model was run for three distinct years and verified against extensive ground observations. To simulate the impact of climate warming on meltwater production, measured meteorological conditions were modified by +1 to +6 °C. The total annual snow water volume exhibited linear reductions (-10 % °C-1) consistent with previous studies. However, the sensitivity of snowmelt rates to successive degrees of warming varied nonlinearly with elevation. Middle elevations and years with more snowfall were prone to the largest reductions in snowmelt rates, with lesser changes simulated at higher elevations. Importantly, simulated warming causes extreme daily snowmelt (99th percentiles) to increase in spatial extent and intensity, and shift from spring to winter. The results offer insight into the sensitivity of mountain snow water resources and how the rate and timing of water availability may change in a warmer climate. The identification of future climate conditions that may increase extreme melt events is needed to address the climate resilience of regional flood control systems.

Multiplex Amplification Coupled with COLD-PCR and High Resolution Melting Enables Identification of Low-Abundance Mutations in Cancer Samples with Low DNA Content

PubMed Central

Milbury, Coren A.; Chen, Clark C.; Mamon, Harvey; Liu, Pingfang; Santagata, Sandro; Makrigiorgos, G. Mike

2011-01-01

Thorough screening of cancer-specific biomarkers, such as DNA mutations, can require large amounts of genomic material; however, the amount of genomic material obtained from some specimens (such as biopsies, fine-needle aspirations, circulating-DNA or tumor cells, and histological slides) may limit the analyses that can be performed. Furthermore, mutant alleles may be at low-abundance relative to wild-type DNA, reducing detection ability. We present a multiplex-PCR approach tailored to amplify targets of interest from small amounts of precious specimens, for extensive downstream detection of low-abundance alleles. Using 3 ng of DNA (1000 genome-equivalents), we amplified the 1 coding exons (2-11) of TP53 via multiplex-PCR. Following multiplex-PCR, we performed COLD-PCR (co-amplification of major and minor alleles at lower denaturation temperature) to enrich low-abundance variants and high resolution melting (HRM) to screen for aberrant melting profiles. Mutation-positive samples were sequenced. Evaluation of mutation-containing dilutions revealed improved sensitivities after COLD-PCR over conventional-PCR. COLD-PCR improved HRM sensitivity by approximately threefold to sixfold. Similarly, COLD-PCR improved mutation identification in sequence-chromatograms over conventional PCR. In clinical specimens, eight mutations were detected via conventional-PCR-HRM, whereas 12 were detected by COLD-PCR-HRM, yielding a 33% improvement in mutation detection. In summary, we demonstrate an efficient approach to increase screening capabilities from limited DNA material via multiplex-PCR and improve mutation detection sensitivity via COLD-PCR amplification. PMID:21354058

DETECTION OF DNA DAMAGE USING MELTING ANALYSIS TECHNIQUES

EPA Science Inventory

A rapid and simple fluorescence screening assay for UV radiation-, chemical-, and enzyme-induced DNA damage is reported. This assay is based on a melting/annealing analysis technique and has been used with both calf thymus DNA and plasmid DNA (puc 19 plasmid from E. coli). DN...

Insights into Spatial Sensitivities of Ice Mass Response to Environmental Change from the SeaRISE Ice Sheet Modeling Project I: Antarctica

NASA Technical Reports Server (NTRS)

Nowicki, Sophie; Bindschadler, Robert A.; Abe-Ouchi, Ayako; Aschwanden, Andy; Bueler, Ed; Choi, Hyengu; Fastook, Jim; Granzow, Glen; Greve, Ralf; Gutowski, Gail;

Automated Forensic Animal Family Identification by Nested PCR and Melt Curve Analysis on an Off-the-Shelf Thermocycler Augmented with a Centrifugal Microfluidic Disk Segment

PubMed Central

Zengerle, Roland; von Stetten, Felix; Schmidt, Ulrike

2015-01-01

Nested PCR remains a labor-intensive and error-prone biomolecular analysis. Laboratory workflow automation by precise control of minute liquid volumes in centrifugal microfluidic Lab-on-a-Chip systems holds great potential for such applications. However, the majority of these systems require costly custom-made processing devices. Our idea is to augment a standard laboratory device, here a centrifugal real-time PCR thermocycler, with inbuilt liquid handling capabilities for automation. We have developed a microfluidic disk segment enabling an automated nested real-time PCR assay for identification of common European animal groups adapted to forensic standards. For the first time we utilize a novel combination of fluidic elements, including pre-storage of reagents, to automate the assay at constant rotational frequency of an off-the-shelf thermocycler. It provides a universal duplex pre-amplification of short fragments of the mitochondrial 12S rRNA and cytochrome b genes, animal-group-specific main-amplifications, and melting curve analysis for differentiation. The system was characterized with respect to assay sensitivity, specificity, risk of cross-contamination, and detection of minor components in mixtures. 92.2% of the performed tests were recognized as fluidically failure-free sample handling and used for evaluation. Altogether, augmentation of the standard real-time thermocycler with a self-contained centrifugal microfluidic disk segment resulted in an accelerated and automated analysis reducing hands-on time, and circumventing the risk of contamination associated with regular nested PCR protocols. PMID:26147196

Life cycle assessment of pyrolysis, gasification and incineration waste-to-energy technologies: Theoretical analysis and case study of commercial plants.

PubMed

Dong, Jun; Tang, Yuanjun; Nzihou, Ange; Chi, Yong; Weiss-Hortala, Elsa; Ni, Mingjiang

2018-06-01

Municipal solid waste (MSW) pyrolysis and gasification are in development, stimulated by a more sustainable waste-to-energy (WtE) option. Since comprehensive comparisons of the existing WtE technologies are fairly rare, this study aims to conduct a life cycle assessment (LCA) using two sets of data: theoretical analysis, and case studies of large-scale commercial plants. Seven systems involving thermal conversion (pyrolysis, gasification, incineration) and energy utilization (steam cycle, gas turbine/combined cycle, internal combustion engine) are modeled. Theoretical analysis results show that pyrolysis and gasification, in particular coupled with a gas turbine/combined cycle, have the potential to lessen the environmental loadings. The benefits derive from an improved energy efficiency leading to less fossil-based energy consumption, and the reduced process emissions by syngas combustion. Comparison among the four operating plants (incineration, pyrolysis, gasification, gasification-melting) confirms a preferable performance of the gasification plant attributed to syngas cleaning. The modern incineration is superior over pyrolysis and gasification-melting at present, due to the effectiveness of modern flue gas cleaning, use of combined heat and power (CHP) cycle, and ash recycling. The sensitivity analysis highlights a crucial role of the plant efficiency and pyrolysis char land utilization. The study indicates that the heterogeneity of MSW and syngas purification technologies are the most relevant impediments for the current pyrolysis/gasification-based WtE. Potential development should incorporate into all process aspects to boost the energy efficiency, improve incoming waste quality, and achieve efficient residues management. Copyright © 2018 Elsevier B.V. All rights reserved.

In situ Pressure Fluctuations of Polymer Melt Flow Instabilities: Experimental Evidence about their Origin and Dynamics.

PubMed

Palza, Humberto; Naue, Ingo F C; Wilhelm, Manfred

2009-11-02

Despite the practical importance of polymer melt instabilities, there is still a lack of experiments able to characterize in situ the origin and behavior of these phenomena. In this context, a new set-up consisting of high sensitive pressure transducers located inside a slit-die and an advanced mathematical framework to process in situ measurements of polymer melt instabilities, are developed and applied. Our results show for the first time that pressure oscillations can actually be detected inside the die under sharkskin conditions. This originates from a factor of 10(3) and 10(2) improvement in terms of time and pressure resolution. Furthermore, new evidence towards the propagation of the slip phenomena along the die in spurt instabilities are found. Copyright © 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

X-ray radiographic measurements of falling beads in thermally heated Comp B

NASA Astrophysics Data System (ADS)

Suvorova, Natalya; Remelius, Dennis; Oschwald, David; Smilowitz, Laura; Henson, Bryan; Davis, Stephen; Zerkle, David

2017-06-01

We have studied the behavior of Composition B under thermal heating conditions. Comp B formulation has complex thermal behavior due to the combination of 40% low melting point TNT and 60% RDX. At temperatures above the TNT melt, the mechanical behavior of Comp B is complex and sensitive to handling conditions (for instance, stirred versus stationary). In this presentation, we will discuss our experiments studying the motion of embedded beads of various densities different from Comp B density as the system is heated above the TNT melt temperature and before the onset of significant gas generation in the Comp B which acts to mix the RDX and molten TNT. X-ray radiography was used to directly observe the motion of the embedded bead in the Comp B as it is slowly and uniformly heated.

The solubility of olivine in basaltic liquids - An ionic model

NASA Technical Reports Server (NTRS)

Herzberg, C. T.

1979-01-01

A model is presented which enables the temperature at which olivine is in equilibrium with any alkali-depleted basaltic compound to be calculated to within + or - 30 C. It is noted that the error increases substantially when applied to terrestrial basalts which contain several weight percent alkalis. In addition the model predicts and quantifies the reduced activity of SiO4(4-) monomers due to increasing SiO2 concentrations in the melt. It is shown that the coordination of alumina in melts which precipitate olivine only appears to be dominantly octahedral, while titanium acts as a polmerizing agent by interconnecting previously isolated SiO4(4-) monomers. It is concluded that the model is sufficiently sensitive to show that there are small repulsive forces between Mg(2+) and calcium ions which are in association with normative diopside in the melt.

Marine ice sheet collapse potentially under way for the Thwaites Glacier Basin, West Antarctica.

PubMed

Joughin, Ian; Smith, Benjamin E; Medley, Brooke

2014-05-16

Resting atop a deep marine basin, the West Antarctic Ice Sheet has long been considered prone to instability. Using a numerical model, we investigated the sensitivity of Thwaites Glacier to ocean melt and whether its unstable retreat is already under way. Our model reproduces observed losses when forced with ocean melt comparable to estimates. Simulated losses are moderate (<0.25 mm per year at sea level) over the 21st century but generally increase thereafter. Except possibly for the lowest-melt scenario, the simulations indicate that early-stage collapse has begun. Less certain is the time scale, with the onset of rapid (>1 mm per year of sea-level rise) collapse in the different simulations within the range of 200 to 900 years. Copyright © 2014, American Association for the Advancement of Science.

Near-Melting Condition of the Inner Core Boundary Revealed from Antipodal Seismic Waves

NASA Astrophysics Data System (ADS)

Cormier, V. F.; Attanayake, J.; de Silva, S. M. S.; Miller, M. S.; Thomas, C.

2014-12-01

First-principles calculations1 have suggested that the inner core's low shear velocity (3.5 km/sec) is a consequence of its temperature being very close to its melting temperature throughout its volume. Near the inner core's freezing or melting boundary, the shear modulus could possibly approach zero. A test of this is made from observations of the amplitude of PKIIKP waves at antipodal (>175o) ranges. These underside reflections are very sensitive to the S velocity beneath the inner core boundary due to energy subtracted from PKIIKP by converted S energy. This sensitivity is exploited by modeling PKIIKP waveforms observed by a transportable array in Morocco, which recorded many high-quality antipodal waveforms from Tonga. Differences in the in the sampling of the upper inner core between PKIIKP arriving from the short (<180o) and long (>180o) distances make it feasible to investigate lateral differences in the elastic and anelastic states of uppermost inner core from the amplitude and frequency content of the waveforms. In computational experiments, we show that a zero or small shear modulus in the uppermost inner core is the most effective way of matching large amplitude PKIIKP's observed from antipodal paths from Tonga to Morocco. The correlation of this bright spot in the PKIIKP reflection with a thin zone of low P velocity identified from multi-pathed PKIKP waves sampling a portion of the equatorial eastern hemisphere2suggests that at least this region of the inner core is near its melting temperature. Waveform modeling of PKIKP and PKIIKP from the combined effects of viscoelasticity and forward scattering is performed to determine whether this region of low shear modulus is consistent with freezing or melting. 1Martorell, B., L. Vocadlo, J.P. Brodholt, and I.G.Wood, (2013) Science, 342 (6157), doi: 10.1126/science.1243651. 2Stroujkova, A., and V.F. Cormier (2004), J. Geophys. Res., 109(B10), doi:10.1029/2004JB002976.

Neutralization of Hydroxide Ion in Melt-Grown NaCl Crystals

NASA Technical Reports Server (NTRS)

Otterson, Dumas A.

1961-01-01

Many recent studies of solid-state phenomena, particularly in the area of crystal imperfections, have involved the use of melt-grown NaCl single crystals. Quite often trace impurities in these materials have had a prominent effect on these phenomena. Trace amounts of hydroxide ion have been found in melt-grown NaCl crystals. This paper describes a nondestructive method of neutralizing the hydroxide ion in such crystals. Crystals of similar hydroxide content are maintained at an elevated temperature below the melting point of NaCl in a flowing atmosphere containing. dry hydrogen chloride. Heat treatment is continued until an analysis of the test specimens shows no excess hydroxide ion. A colorimetric method previously described4 is used for this analysis.

Monte Carlo Study of Melting of a Model Bulk Ice.

NASA Astrophysics Data System (ADS)

Han, Kyu-Kwang

The methods of NVT (constant number, volume and temperature) and NPT (constant number, pressure and temperature) Monte Carlo computer simulations are used to examine the melting of a periodic hexagonal ice (ice Ih) sample with a unit cell of 192 (rigid) water molecules interacting via the revised central force potentials of Stillinger and Rahman (RSL2). In NVT Monte Carlo simulation of P-T plot for a constant density (0.904g/cm^3) is used to locate onset of the liquid-solid coexistence region (where the slope of the pressure changes sign) and estimate the (constant density) melting point. The slope reversal is a natural consequence of the constant density condition for substances which expand upon freezing and it is pointed out that this analysis is extremely useful for substances such as water. In this study, a sign reversal of the pressure slope is observed near 280 K, indicating that the RSL2 potentials reproduce the freezing expansion expected for water and support a bulk ice Ih system which melts <280 K. The internal energy, specific heat, and two dimensional structure factors for the constant density H_2O system are also examined at a range of temperatures between 100 and 370 K and support the P-T analysis for location of the melting point. This P-T analysis might likewise be useful for determining a (constant density) freezing point, or, with multiple simulations at appropriate densities, the triple point. For NPT Monte Carlo simulations preliminary results are presented. In this study the density, enthalpy, specific heat, and structure factor dependences on temperature are monitored during a sequential heating of the system from 100 to 370 K at a constant pressure (1 atm.). A jump in density upon melting is observed and indicates that the RSL2 potentials reproduce the melting contraction of ice. From the dependences of monitored physical properties on temperature an upper bound on the melting temperature is estimated. In this study we made the first analysis and calculation of the P-T curve for ice Ih melting at constant volume and the first NPT study of ice and of ice melting. In the NVT simulation we found for rho = 0.904g/cm^3 T_ {rm m} ~eq 280 K which is much closer to physical T_ {rm m} than any other published NVT simulation of ice. Finally it is shown that RSL2 potentials do a credible job of describing the thermodynamic properties of ice Ih near its melting point.

Fuse protects circuit from voltage and current overloads

NASA Technical Reports Server (NTRS)

Casey, L. O.

1969-01-01

Low-melting resistor connected in series with the load protects the circuit against current overloads. It protects test subjects and patients being monitored by electronic instrumentation from inadvertant overloads of current, and sensitive electronic equipment against high-voltage damage.

A STUDY OF DISLOCATION STRUCTURE OF SUBBOUNDARIES IN MOLYBDENUM SINGLE CRYSTALS,

DTIC Science & Technology

MOLYBDENUM, *DISLOCATIONS), GRAIN STRUCTURES(METALLURGY), SINGLE CRYSTALS, ZONE MELTING, ELECTRON BEAM MELTING, GRAIN BOUNDARIES, MATHEMATICAL ANALYSIS, ETCHED CRYSTALS, ETCHING, ELECTROEROSIVE MACHINING, CHINA

Increasing chloride concentration causes retention of mercury in melted Arctic snow due to changes in photoreduction kinetics.

PubMed

Mann, E A; Ziegler, S E; Steffen, A; O'Driscoll, N J

2018-06-01

Mercury (Hg) in the Arctic is a significant concern due to its bioaccumulative and neurotoxic properties, and the sensitivity of Arctic environments. Previous research has found high levels of Hg in snowpacks with high chloride (Cl - ) concentrations. We hypothesised that Cl - would increase Hg retention by decreasing Hg photoreduction to Hg(0) in melted Arctic snow. To test this, changes in Hg photoreduction kinetics in melted Alert, NU snow were quantified with changing Cl - concentration and UV intensity. Snow was collected and melted in Teflon bottles in May 2014, spiked with 0-10μg/g Cl - , and irradiated with 3.52-5.78W·m -2 UV (280-400nm) radiation in a LuzChem photoreactor. Photoreduction rate constants (k) (0.14-0.59hr - 1 ) had positive linear relationships with [Cl - ], while photoreduced Hg amounts (Hg(II) red ) had negative linear relationships with [Cl - ] (1287-64pg in 200g melted snow). Varying UV and [Cl - ] both altered Hg(II) red amounts, with more efficient Hg stabilisation by Cl - at higher UV intensity, while k can be predicted by Cl - concentration and/or UV intensity, depending on experimental parameters. Overall, with future projections for greater snowpack Cl - loading, our experimental results suggest that more Hg could be delivered to Arctic aquatic ecosystems by melted snow (smaller Hg(II) red expected), but the Hg in the melted snow that is photoreduced may do so more quickly (larger k expected). Copyright © 2018. Published by Elsevier B.V.

Influence of Melting and Hydrothermal Alteration on Lead in Abyssal Peridotites

NASA Astrophysics Data System (ADS)

Warren, J. M.; D'Errico, M. E.; Godard, M.; Coble, M. A.; Horan, M.

2017-12-01

The lead isotopic system is a key tracer of mantle convection, yet the abundance and mineralogical hosts of Pb in the upper mantle are poorly constrained. To address this, we analyzed the concentration of Pb in minerals and bulk rock powders of abyssal peridotites. These samples represent the oceanic upper mantle following melt extraction. They can be used to explore the mantle Pb budget, assuming that the amount of Pb lost during mantle melting and gained during seafloor alteration can be determined. We performed in situ analysis of the three main silicate phases (olivine, orthopyroxene, and clinopyroxene), which yield Pb concentrations of 2-30 ppb. Olivine is the main mineralogical host of Pb, unlike other trace elements, which are predominantly hosted in clinopyroxene. Sulfide contains an average of 3 ppm Pb, but these high concentrations are offset by low modal abundances (<0.01%), making this mineral a minor source of peridotite Pb. Whole rock Pb concentrations of abyssal peridotites measured by thermal ionization mass spectrometry range from 3 to 38 ppb. These values are close to the reconstructed whole rock values of 2 to 14 ppb, calculated from the mineral concentrations of Pb multiplied by their modes. In contrast, the average value among literature data for whole rock abyssal peridotites is >100 ppb [1, 2], measured by inductively-coupled plasma mass spectrometry. The higher values among literature data may reflect a combination of lower analytical sensitivity and effects of alteration. Samples in this study include an unaltered peridotite from the Gakkel Ridge, which shows the closest agreement between reconstructed and measured whole rock values. We estimate that our peridotites have undergone 5 to 9% melting [3], based on non-modal fractional melt modeling of rare earth element abundances. Assuming 18 to 23 ppb Pb in the depleted source mantle [4, 5], expected concentrations in abyssal peridotites after melting are <1 ppb. However, as suggested by [5], mantle Pb abundance is poorly constrained by the Ce/Pb ratio of mid-ocean ridge basalt and the amount of Pb in the depleted mantle may be higher than current estimates. [1] Niu, 2004, J. Pet.; [2] Paulick et al., 2006, Chem. Geol.; [3] D'Errico et al., 2016, GCA; [4] Salters and Stracke, 2004, G-Cubed; [5] Workman and Hart, 2005 EPSL.

Deformation, static recrystallization, and reactive melt transport in shallow subcontinental mantle xenoliths (Tok Cenozoic volcanic field, SE Siberia)

NASA Astrophysics Data System (ADS)

Tommasi, Andréa; Vauchez, Alain; Ionov, Dmitri A.

2008-07-01

Partial melting and reactive melt transport may change the composition, microstructures, and physical properties of mantle rocks. Here we explore the relations between deformation and reactive melt transport through detailed microstructural analysis and crystallographic orientation measurements in spinel peridotite xenoliths that sample the shallow lithospheric mantle beneath the southeastern rim of the Siberian craton. These xenoliths have coarse-grained, annealed microstructures and show petrographic and chemical evidence for variable degrees of reaction with silicate melts and fluids, notably Fe-enrichment and crystallization of metasomatic clinopyroxene (cpx). Olivine crystal preferred orientations (CPO) range from strong to weak. [010]-fiber patterns, characterized by a point concentration of [010] normal to the foliation and by dispersion of [100] in the foliation plane with a weak maximum parallel to the lineation, predominate relative to the [100]-fiber patterns usually observed in lithospheric mantle xenoliths and peridotite massifs. Variations in olivine CPO patterns or intensity are not correlated with modal and chemical compositions. This, together with the analysis of microstructures, suggests that reactive melt percolation postdated both deformation and static recrystallization. Preferential crystallization of metasomatic cpx along (010) olivine grain boundaries points to an influence of the preexisting deformation fabrics on melt transport, with higher permeability along the foliation. Similarity between orthopyroxene (opx) and cpx CPO suggests that cpx orientations may be inherited from those of opx during melt-rock reaction. As observed in previous studies, reactive melt transport does not weaken olivine CPO and seismic anisotropy in the upper mantle, except in melt accumulation domains. In contrast, recovery and selective grain growth during static recrystallization may lead to development of [010]-fiber olivine CPO and, if foliations are horizontal, result in apparent isotropy for vertically propagating SKS waves, but strong anisotropy for horizontally propagating surface waves.

Melting in Superheated Silicon Films Under Pulsed-Laser Irradiation

NASA Astrophysics Data System (ADS)

Wang, Jin Jimmy

This thesis examines melting in superheated silicon films in contact with SiO2 under pulsed laser irradiation. An excimer-laser pulse was employed to induce heating of the film by irradiating the film through the transparent fused-quartz substrate such that most of the beam energy was deposited near the bottom Si-SiO2 interface. Melting dynamics were probed via in situ transient reflectance measurements. The temperature profile was estimated computationally by incorporating temperature- and phase-dependent physical parameters and the time-dependent intensity profile of the incident excimer-laser beam obtained from the experiments. The results indicate that a significant degree of superheating occurred in the subsurface region of the film. Surface-initiated melting was observed in spite of the internal heating scheme, which resulted in the film being substantially hotter at and near the bottom Si-SiO2 interface. By considering that the surface melts at the equilibrium melting point, the solid-phase-only heat-flow analysis estimates that the bottom Si-SiO2 interface can be superheated by at least 220 K during excimer-laser irradiation. It was found that at higher laser fluences (i.e., at higher temperatures), melting can be triggered internally. At heating rates of 1010 K/s, melting was observed to initiate at or near the (100)-oriented Si-SiO2 interface at temperatures estimated to be over 300 K above the equilibrium melting point. Based on theoretical considerations, it was deduced that melting in the superheated solid initiated via a nucleation and growth process. Nucleation rates were estimated from the experimental data using Johnson-Mehl-Avrami-Kolmogorov (JMAK) analysis. Interpretation of the results using classical nucleation theory suggests that nucleation of the liquid phase occurred via the heterogeneous mechanism along the Si-SiO2 interface.

Hydrodynamic instabilities of flows involving melting in under-saturated porous media

NASA Astrophysics Data System (ADS)

Sajjadi, M.; Azaiez, J.

2016-03-01

The process of melting in partially saturated porous media is modeled for flow displacements prone to hydrodynamic instabilities due to adverse mobility ratios. The effects of the development of instabilities on the melting process are investigated through numerical simulations as well as analytical solution to unravel the physics of the flow. The effects of melting parameters, namely, the melting potential of the fluid, the rate of heat transfer to the frozen phase, and the saturation of the frozen material along with the parameters defining the viscous forces, i.e., the thermal and solutal log mobility ratios are examined. Results are presented for different scenarios and the enhancement or attenuation of instabilities are discussed based on the dominant physical mechanisms. Beside an extensive qualitative analysis, the performance of different displacement scenarios is compared with respect to the melt production and the extent of contribution of instability to the enhancement of melting. It is shown that the hydrodynamic instabilities tend in general to enhance melting but the rate of enhancement depends on the interplay between the instabilities and melting at the thermal front. A larger melting potential and a smaller saturation of the frozen material tend to increase the contribution of instability to melting.

Fused Bead Analysis of Diogenite Meteorites

NASA Technical Reports Server (NTRS)

Mittlefehldt, D.W.; Beck, B.W.; McSween, H.Y.; Lee, C.T. A.

2009-01-01

Bulk rock chemistry is an essential dataset in meteoritics and planetary science [1]. A common method used to obtain the bulk chemistry of meteorites is ICP-MS. While the accuracy, precision and low detection limits of this process are advantageous [2], the sample size used for analysis (approx.70 mg) can be a problem in a field where small and finite samples are the norm. Fused bead analysis is another bulk rock analytical technique that has been used in meteoritics [3]. This technique involves forming a glass bead from 10 mg of sample and measuring its chemistry using a defocused beam on a microprobe. Though the ICP-MS has lower detection limits than the microprobe, the fused bead method destroys a much smaller sample of the meteorite. Fused bead analysis was initially designed for samples with near-eutectic compositions and low viscosities. Melts generated of this type homogenize at relatively low temperatures and produce primary melts near the sample s bulk composition [3]. The application of fused bead analysis to samples with noneutectic melt compositions has not been validated. The purpose of this study is to test if fused bead analysis can accurately determine the bulk rock chemistry of non-eutectic melt composition meteorites. To determine this, we conduct two examinations of the fused bead. First, we compare ICP-MS and fused bead results of the same samples using statistical analysis. Secondly, we inspect the beads for the presence of crystals and chemical heterogeneity. The presence of either of these would indicate incomplete melting and quenching of the bead.

The mineralogical, chemical, and chronological characteristics of the crystalline Apollo 16 impact melt rocks

NASA Technical Reports Server (NTRS)

Reimold, W. U.; Reimold, J. N.

1984-01-01

A comparative review of mineralogical, chemical, and chronological data on crystalline Apollo 16 impact melt rocks is presented. The use of such data to identify distinct impact melt complex is discussed, and 22 distinct impact melt bodies are identified. The recently detected group of feldspathic microporphyritic (FM) melt rocks was tested for chemical and isotopic homogeneity; instrumental neutron activation analysis and new Rb-Sr isotopic whole rock data indicate that FMs were probably not derived from a single impact melt sheet, but might be representative of the Descartes basement. Stratigraphical and chronological concepts for the geological development of the landing site are discussed, and a model is presented for the formation of the Cayley Plains and the Descartes formation.

Mutual interaction between high and low stereo-regularity components for crystallization and melting behaviors of polypropylene blend fibers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kawai, Kouya; Takarada, Wataru; Kikutani, Takeshi, E-mail: kikutani.t.aa@m.titech.ac.jp

Crystallization and melting behaviors of blend fibers of two types of polypropylene (PP), i.e. high stereo-regularity/high molecular weight PP (HPP) and low stereo-regularity/low molecular weight PP (LPP), was investigated. Blend fibers consisting of various HPP/LPP compositions were prepared through the melt spinning process. Differential scanning calorimetry (DSC), temperature modulated DSC (TMDSC) and wide-angle X-ray diffraction (WAXD) analysis were applied for clarifying the crystallization and melting behaviors of individual components. In the DSC measurement of blend fibers with high LPP composition, continuous endothermic heat was detected between the melting peaks of LPP at around 40 °C and that of HPP atmore » around 160 °C. Such endothermic heat was more distinct for the blend fibers with higher LPP composition indicating that the melting of LPP in the heating process was hindered because of the presence of HPP crystals. On the other hand, heat of crystallization was detected at around 90 °C in the case of blend fibers with LPP content of 30 to 70 wt%, indicating that the crystallization of HPP component was taking place during the heating of as-spun blend fibers in the DSC measurement. Through the TMDSC analysis, re-organization of the crystalline structure through the simultaneous melting and re-crystallization was detected in the cases of HPP and blend fibers, whereas re-crystallization was not detected during the melting of LPP fibers. In the WAXD analysis during the heating of fibers, amount of a-form crystal was almost constant up to the melting in the case of single component HPP fibers, whereas there was a distinct increase of the intensity of crystalline reflections from around 100 °C, right after the melting of LPP in the case of blend fibers. These results suggested that the crystallization of HPP in the spinning process as well as during the conditioning process after spinning was hindered by the presence of LPP.« less

Flash melting of tantalum in a diamond cell to 85 GPa

DOE Office of Scientific and Technical Information (OSTI.GOV)

Karandikar, Amol; Boehler, Reinhard

2016-02-09

Here, we demonstrate a new level of precision in measuring melting temperatures at high pressure using laser flash-heating followed by Scanning Electron Microscopy and Focused Ion Beam Milling. Furthermore, the new measurements on tantalum put unprecedented constraints on its highly debated melting slope, calling for a reevaluation of theoretical, shock compression and diamond cell approaches to determine melting at high pressure. X-ray analysis of the recovered samples confirmed the absence of chemical reactions, which likely played a significant role in previous experiments.

Rapidly solidified titanium alloys by melt overflow

NASA Technical Reports Server (NTRS)

Gaspar, Thomas A.; Bruce, Thomas J., Jr.; Hackman, Lloyd E.; Brasmer, Susan E.; Dantzig, Jonathan A.; Baeslack, William A., III

1989-01-01

A pilot plant scale furnace was designed and constructed for casting titanium alloy strips. The furnace combines plasma arc skull melting techniques with melt overflow rapid solidification technology. A mathematical model of the melting and casting process was developed. The furnace cast strip of a suitable length and width for use with honeycomb structures. Titanium alloys Ti-6Al-4V and Ti-14Al-21 Nb were successfully cast into strips. The strips were evaluated by optical metallography, microhardness measurements, chemical analysis, and cold rolling.

A model for the latent heat of melting in free standing metal nanoparticles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shin, Jeong-Heon; Deinert, Mark R., E-mail: mdeinert@mail.utexas.edu

2014-04-28

Nanoparticles of many metals are known to exhibit scale dependent latent heats of melting. Analytical models for this phenomenon have so far failed to completely capture the observed phenomena. Here we present a thermodynamic analysis for the melting of metal nanoparticles in terms of their internal energy and a scale dependent surface tension proposed by Tolman. The resulting model predicts the scale dependence of the latent heat of melting and is confirmed using published data for tin and aluminum.

A model for the latent heat of melting in free standing metal nanoparticles

NASA Astrophysics Data System (ADS)

Shin, Jeong-Heon; Deinert, Mark R.

2014-04-01

Nanoparticles of many metals are known to exhibit scale dependent latent heats of melting. Analytical models for this phenomenon have so far failed to completely capture the observed phenomena. Here we present a thermodynamic analysis for the melting of metal nanoparticles in terms of their internal energy and a scale dependent surface tension proposed by Tolman. The resulting model predicts the scale dependence of the latent heat of melting and is confirmed using published data for tin and aluminum.

A model for the latent heat of melting in free standing metal nanoparticles.

PubMed

Shin, Jeong-Heon; Deinert, Mark R

2014-04-28

Nanoparticles of many metals are known to exhibit scale dependent latent heats of melting. Analytical models for this phenomenon have so far failed to completely capture the observed phenomena. Here we present a thermodynamic analysis for the melting of metal nanoparticles in terms of their internal energy and a scale dependent surface tension proposed by Tolman. The resulting model predicts the scale dependence of the latent heat of melting and is confirmed using published data for tin and aluminum.

Tracing mantle processes with Fe isotopes

NASA Astrophysics Data System (ADS)

Weyer, S.; Ionov, D.

2006-12-01

High precision Fe isotope measurements have been performed on various mantle peridotites (fertile lherzolites, harzburgites, metasomatised Fe-enriched rocks) and volcanic rocks (mainly oceanic basalts) from different localities and tectonic settings. Pimitive peridotites (Mg# = 0.894) yield delta56Fe = 0.02 and are significantly lighter than the basalts (average delta56Fe = 0.11). Furthermore, the peridotites display a negative correlation of iron isotopes with Mg#. Taken together, these findings imply that Fe isotopes fractionate during partial melting, with heavy isotopes preferentially entering the melt [1, 2]. A particularly good correlation of the Fe isotope composition and Mg# shown by poorly metasomatised spinel lherzolites of three localities (Horoman, Kamchatka and Lherz) was used to model Fe isotope fractionation during partial melting, resulting in alphamantle-melt = 1.0003. This value implies higher Fe isotope fractionation between residual mantle and mantle-derived melts (i.e. Delta56Femantle-melt = 0.2-0.3) than the observed difference between the peridotites and the basalts in this study. Our data on plagioclase lherzolites from Horoman and spinel lherzolites from other localities indicate that the difference in Fe isotope composition between mantle and basalts may be reduced by partial re-equilibration between the isotopically heavy basalts and the isotopically light depleted lithospheric mantle during melt ascent. Besides partial melting, the Fe isotope composition of mantle peridotites can also be significantly modified by metasomatic events. At two localities (Tok, Siberia and Tariat, Mongolia) Fe isotopes correlates with the Fe concentration of the peridotites, which was increased up to 14.5% FeO by melt percolation. Such processes can be accompanied by chromatographic effects and produce a range of Fe isotope compositions in the percolation columns, from extremely light to heavy (delta56Fe = -0.42 to +0.17). We propose that Fe isotopes can be used as a sensitive tracer to identify such metasomatic processes in the mantle. [1] Weyer et al. (2005) EPSL 240: 251-264 [2] Williams et al. (2005) EPSL 235 : 435-452

Under-ice melt ponds in the Arctic

NASA Astrophysics Data System (ADS)

Smith, Naomi; Flocco, Daniela; Feltham, Daniel

2017-04-01

In the summer months, melt water from the surface of the Arctic sea ice can percolate down through the ice and flow out of its base. This water is relatively warm and fresh compared to the ocean water beneath it, and so it floats between the ice and the oceanic mixed layer, forming pools of melt water called under-ice melt ponds. Double diffusion can lead to the formation of a sheet of ice, which is called a false bottom, at the interface between the fresh water and the ocean. These false bottoms isolate under-ice melt ponds from the ocean below, trapping the fresh water against the sea ice. These ponds and false bottoms have been estimated to cover between 5 and 40% of the base of the sea ice. [Notz et al. Journal of Geophysical Research 2003] We have developed a one-dimensional thermodynamic model of sea ice underlain by an under-ice melt pond and false bottom. Not only has this allowed us to simulate the evolution of under-ice melt ponds over time, identifying an alternative outcome than previously observed in the field, but sensitivity studies have helped us to estimate the impact that these pools of fresh water have on the mass-balance sea ice. We have also found evidence of a possible positive feedback cycle whereby increasingly less ice growth is seen due to the presence of under-ice melt ponds as the Arctic warms. Since the rate of basal ablation is affected by these phenomena, their presence alters the salt and freshwater fluxes from the sea ice into the ocean. We have coupled our under-ice melt pond model to a simple model of the oceanic mixed layer to determine how this affects mixed layer properties such as temperature, salinity, and depth. In turn, this changes the oceanic forcing reaching the sea ice.

Hybrid analysis (barcode-high resolution melting) for authentication of Thai herbal products, Andrographis paniculata (Burm.f.) Wall.ex Nees

PubMed Central

Osathanunkul, Maslin; Suwannapoom, Chatmongkon; Khamyong, Nuttaluck; Pintakum, Danupol; Lamphun, Santisuk Na; Triwitayakorn, Kanokporn; Osathanunkul, Kitisak; Madesis, Panagiotis

2016-01-01

Background: Andrographis paniculata Nees is a medicinal plant with multiple pharmacological properties. It has been used over many centuries as a household remedy. A. paniculata products sold on the markets are in processed forms so it is difficult to authenticate. Therefore buying the herbal products poses a high-risk of acquiring counterfeited, substituted and/or adulterated products. Due to these issues, a reliable method to authenticate products is needed. Materials and Methods: High resolution melting analysis coupled with DNA barcoding (Bar-HRM) was applied to detect adulteration in commercial herbal products. The rbcL barcode was selected to use in primers design for HRM analysis to produce standard melting profile of A. paniculata species. DNA of the tested commercial products was isolated and their melting profiles were then generated and compared with the standard A. paniculata. Results: The melting profiles of the rbcL amplicons of the three closely related herbal species (A. paniculata, Acanthus ebracteatus and Rhinacanthus nasutus) are clearly separated so that they can be distinguished by the developed method. The method was then used to authenticate commercial herbal products. HRM curves of all 10 samples tested are similar to A. paniculata which indicated that all tested products were contained the correct species as labeled. Conclusion: The method described in this study has been proved to be useful in aiding identification and/or authenticating A. paniculata. This Bar-HRM analysis has allowed us easily to determine the A. paniculata species in herbal products on the markets even they are in processed forms. SUMMARY We propose the use of DNA barcoding combined with High Resolution Melting analysis for authenticating of Andrographis paniculata products.The developed method can be used regardless of the type of the DNA template (fresh or dried tissue, leaf, and stem).rbcL region was chosen for the analysis and work well with our samplesWe can easily determine the A. paniculata species in herbal products tested. Abbreviations used: bp: Base pair, Tm: Melting temperature PMID:27041863

Validation of high-resolution DNA melting analysis for mutation scanning of the CDKL5 gene: identification of novel mutations.

PubMed

Raymond, Laure; Diebold, Bertrand; Leroux, Céline; Maurey, Hélène; Drouin-Garraud, Valérie; Delahaye, Andre; Dulac, Olivier; Metreau, Julia; Melikishvili, Gia; Toutain, Annick; Rivier, François; Bahi-Buisson, Nadia; Bienvenu, Thierry

2013-01-01

Mutations in the cyclin-dependent kinase-like 5 gene (CDKL5) have been predominantly described in epileptic encephalopathies of female, including infantile spasms with Rett-like features. Up to now, detection of mutations in this gene was made by laborious, expensive and/or time consuming methods. Here, we decided to validate high-resolution melting analysis (HRMA) for mutation scanning of the CDKL5 gene. Firstly, using a large DNA bank consisting to 34 samples carrying different mutations and polymorphisms, we validated our analytical conditions to analyse the different exons and flanking intronic sequences of the CDKL5 gene by HRMA. Secondly, we screened CDKL5 by both HRMA and denaturing high performance liquid chromatography (dHPLC) in a cohort of 135 patients with early-onset seizures. Our results showed that point mutations and small insertions and deletions can be reliably detected by HRMA. Compared to dHPLC, HRMA profiles are more discriminated, thereby decreasing unnecessary sequencing. In this study, we identified eleven novel sequence variations including four pathogenic mutations (2.96% prevalence). HRMA appears cost-effective, easy to set up, highly sensitive, non-toxic and rapid for mutation screening, ideally suited for large genes with heterogeneous mutations located along the whole coding sequence, such as the CDKL5 gene. Copyright © 2012 Elsevier B.V. All rights reserved.

High Resolution Melting Analysis Targeting hsp70 as a Fast and Efficient Method for the Discrimination of Leishmania Species.

PubMed

Zampieri, Ricardo Andrade; Laranjeira-Silva, Maria Fernanda; Muxel, Sandra Marcia; Stocco de Lima, Ana Carolina; Shaw, Jeffrey Jon; Floeter-Winter, Lucile Maria

2016-02-01

Protozoan parasites of the genus Leishmania cause a large spectrum of clinical manifestations known as Leishmaniases. These diseases are increasingly important public health problems in many countries both within and outside endemic regions. Thus, an accurate differential diagnosis is extremely relevant for understanding epidemiological profiles and for the administration of the best therapeutic protocol. Exploring the High Resolution Melting (HRM) dissociation profiles of two amplicons using real time polymerase chain reaction (real-time PCR) targeting heat-shock protein 70 coding gene (hsp70) revealed differences that allowed the discrimination of genomic DNA samples of eight Leishmania species found in the Americas, including Leishmania (Leishmania) infantum chagasi, L. (L.) amazonensis, L. (L.) mexicana, L. (Viannia) lainsoni, L. (V.) braziliensis, L. (V.) guyanensis, L. (V.) naiffi and L. (V.) shawi, and three species found in Eurasia and Africa, including L. (L.) tropica, L. (L.) donovani and L. (L.) major. In addition, we tested DNA samples obtained from standard promastigote culture, naturally infected phlebotomines, experimentally infected mice and clinical human samples to validate the proposed protocol. HRM analysis of hsp70 amplicons is a fast and robust strategy that allowed for the detection and discrimination of all Leishmania species responsible for the Leishmaniases in Brazil and Eurasia/Africa with high sensitivity and accuracy. This method could detect less than one parasite per reaction, even in the presence of host DNA.

Nb-Based Nb-Al-Fe Alloys: Solidification Behavior and High-Temperature Phase Equilibria

NASA Astrophysics Data System (ADS)

Stein, Frank; Philips, Noah

2018-03-01

High-melting Nb-based alloys hold significant promise for the development of novel high-temperature materials for structural applications. In order to understand the effect of alloying elements Al and Fe, the Nb-rich part of the ternary Nb-Al-Fe system was investigated. A series of Nb-rich ternary alloys were synthesized from high-purity Nb, Al, and Fe metals by arc melting. Solidification paths were identified and the liquidus surface of the Nb corner of the ternary system was established by analysis of the as-melted microstructures and thermal analysis. Complementary analysis of heat-treated samples yielded isothermal sections at 1723 K and 1873 K (1450 °C and 1600 °C).

Liquidus Diagram of the Ba-Y-Cu-O System in the Vicinity of the Ba2YCu3O6+x Phase Field

PubMed Central

Wong-Ng, Winnie; Cook, Lawrence P.

1998-01-01

This paper describes the melting equilibria in the vicinity of the high Tc phase Ba2YCu3O6+x, including evidence for two Ba-Y-Cu-O immiscible liquids. Melting equilibria have been investigated in purified air using a combination of differential thermal analysis (DTA), thermogravimetric analysis (TGA), powder x-ray diffraction (XRD), MgO wick entrapment of liquid for analysis, scanning electron microscopy (SEM) coupled with energy dispersive x-ray analysis (EDS), and hydrogen reduction for determination of copper oxidation state. For relatively barium-rich compositions, it was necessary to prepare the starting materials under controlled atmosphere conditions using BaO. A liquidus diagram was derived from quantitative data for the melts involved in various melting reactions. In general the 1/2(Y2O3) contents of the melts participating in these equilibria were low (mole fraction <4 %). The primary phase field of Ba2YCu3O6+x occurs at a mole fraction of <2.0 % 1/2Y2O3 and lies very close along the BaO-CuOx edge, extending from a mole fraction of ≈43 % CuO to a mole fraction of ≈76 % CuO. It is divided by a liquid miscibility gap and extends on either side about this gap. The topological sequence of melting reactions associated with the liquidus is presented as a function of temperature. Implications for the growth of Ba2YCu3O6+x crystals are discussed. PMID:28009382

Rapid discrimination between Anopheles gambiae s.s. and Anopheles arabiensis by High-Resolution Melt (HRM) analysis.

PubMed

Zianni, Michael R; Nikbakhtzadeh, Mahmood R; Jackson, Bryan T; Panescu, Jenny; Foster, Woodbridge A

2013-04-01

There is a need for more cost-effective options to more accurately discriminate among members of the Anopheles gambiae complex, particularly An. gambiae and Anopheles arabiensis. These species are morphologically indistinguishable in the adult stage, have overlapping distributions, but are behaviorally and ecologically different, yet both are efficient vectors of malaria in equatorial Africa. The method described here, High-Resolution Melt (HRM) analysis, takes advantage of minute differences in DNA melting characteristics, depending on the number of incongruent single nucleotide polymorphisms in an intragenic spacer region of the X-chromosome-based ribosomal DNA. The two species in question differ by an average of 13 single-nucleotide polymorphisms giving widely divergent melting curves. A real-time PCR system, Bio-Rad CFX96, was used in combination with a dsDNA-specific dye, EvaGreen, to detect and measure the melting properties of the amplicon generated from leg-extracted DNA of selected mosquitoes. Results with seven individuals from pure colonies of known species, as well as 10 field-captured individuals unambiguously identified by DNA sequencing, demonstrated that the method provided a high level of accuracy. The method was used to identify 86 field mosquitoes through the assignment of each to the two common clusters with a high degree of certainty. Each cluster was defined by individuals from pure colonies. HRM analysis is simpler to use than most other methods and provides comparable or more accurate discrimination between the two sibling species but requires a specialized melt-analysis instrument and software.

Rapid Discrimination between Anopheles gambiae s.s. and Anopheles arabiensis by High-Resolution Melt (HRM) Analysis

PubMed Central

Zianni, Michael R.; Nikbakhtzadeh, Mahmood R.; Jackson, Bryan T.; Panescu, Jenny; Foster, Woodbridge A.

2013-01-01

There is a need for more cost-effective options to more accurately discriminate among members of the Anopheles gambiae complex, particularly An. gambiae and Anopheles arabiensis. These species are morphologically indistinguishable in the adult stage, have overlapping distributions, but are behaviorally and ecologically different, yet both are efficient vectors of malaria in equatorial Africa. The method described here, High-Resolution Melt (HRM) analysis, takes advantage of minute differences in DNA melting characteristics, depending on the number of incongruent single nucleotide polymorphisms in an intragenic spacer region of the X-chromosome-based ribosomal DNA. The two species in question differ by an average of 13 single-nucleotide polymorphisms giving widely divergent melting curves. A real-time PCR system, Bio-Rad CFX96, was used in combination with a dsDNA-specific dye, EvaGreen, to detect and measure the melting properties of the amplicon generated from leg-extracted DNA of selected mosquitoes. Results with seven individuals from pure colonies of known species, as well as 10 field-captured individuals unambiguously identified by DNA sequencing, demonstrated that the method provided a high level of accuracy. The method was used to identify 86 field mosquitoes through the assignment of each to the two common clusters with a high degree of certainty. Each cluster was defined by individuals from pure colonies. HRM analysis is simpler to use than most other methods and provides comparable or more accurate discrimination between the two sibling species but requires a specialized melt-analysis instrument and software. PMID:23543777

The thermal properties of beeswaxes: unexpected findings.

PubMed

Buchwald, Robert; Breed, Michael D; Greenberg, Alan R

2008-01-01

Standard melting point analyses only partially describe the thermal properties of eusocial beeswaxes. Differential scanning calorimetry (DSC) revealed that thermal phase changes in wax are initiated at substantially lower temperatures than visually observed melting points. Instead of a sharp, single endothermic peak at the published melting point of 64 degrees C, DSC analysis of Apis mellifera Linnaeus wax yielded a broad melting curve that showed the initiation of melting at approximately 40 degrees C. Although Apis beeswax retained a solid appearance at these temperatures, heat absorption and initiation of melting could affect the structural characteristics of the wax. Additionally, a more complete characterization of the thermal properties indicated that the onset of melting, melting range and heat of fusion of beeswaxes varied significantly among tribes of social bees (Bombini, Meliponini, Apini). Compared with other waxes examined, the relatively malleable wax of bumblebees (Bombini) had the lowest onset of melting and lowest heat of fusion but an intermediate melting temperature range. Stingless bee (Meliponini) wax was intermediate between bumblebee and honeybee wax (Apini) in heat of fusion, but had the highest onset of melting and the narrowest melting temperature range. The broad melting temperature range and high heat of fusion in the Apini may be associated with the use of wax comb as a free-hanging structural material, while the Bombini and Meliponini support their wax structures with exogenous materials.

The effect of melt refining upon inclusions in aluminum

NASA Astrophysics Data System (ADS)

Simensen, C. J.

1982-03-01

A series of aluminum melts has been refined with respect to inclusions by use of ALCOA 469, FILD, or SNIF. The content and size distribution of inclusions in the original-and the refined melts-have been measured by use of neutron activation (oxygen content), gas chromatography (carbide content), sedimentation analysis, and dissolution of metal in hydrochloric acid and subsequent analysis of oxides by means of a Coulter Counter. All the units tested have a beneficial effect and decrease the inclusion content, but the number of analyses are too few to make general conclusions. However, for melts cleaned by use of SNIF, it was found that oxides larger than 50 μm in cross section and borides larger than 20 μm in diameter were removed, while the smaller borides were agglomerated only. The effect of FILD and ALCOA 469 upon the melt tested was removal of borides larger than 5-10 μ m and oxides larger than 15μm in diameter, respectively.

Characterisation of 2,4-Dinitroanisole: An Ingredient for Use in Low Sensitivity Melt Cast Formulations

DTIC Science & Technology

2006-08-01

PETN/TNT 50/50 PMMA Polymethyl methacrylate RDX Cyclotrimethylenetrinitramine RS-RDX Reduced Sensitivity RDX SEM Scanning electron... toxicological data was available on DNAN. It had been proposed that due to the increased solubility of DNAN over TNT in aqueous solution at biologically...While the toxicological study [18], concluded that the vapour pressure of DNAN was not sufficient to cause concerns over inhalation of DNAN during

Melting, glass transition, and apparent heat capacity of α-D-glucose by thermal analysis.

PubMed

Magoń, A; Pyda, M

2011-11-29

The thermal behaviors of α-D-glucose in the melting and glass transition regions were examined utilizing the calorimetric methods of standard differential scanning calorimetry (DSC), standard temperature-modulated differential scanning calorimetry (TMDSC), quasi-isothermal temperature-modulated differential scanning calorimetry (quasi-TMDSC), and thermogravimetric analysis (TGA). The quantitative thermal analyses of experimental data of crystalline and amorphous α-D-glucose were performed based on heat capacities. The total, apparent and reversingheat capacities, and phase transitions were evaluated on heating and cooling. The melting temperature (T(m)) of a crystalline carbohydrate such as α-D-glucose, shows a heating rate dependence, with the melting peak shifted to lower temperature for a lower heating rate, and with superheating of around 25K. The superheating of crystalline α-D-glucose is observed as shifting the melting peak for higher heating rates, above the equilibrium melting temperature due to of the slow melting process. The equilibrium melting temperature and heat of fusion of crystalline α-D-glucose were estimated. Changes of reversing heat capacity evaluated by TMDSC at glass transition (T(g)) of amorphous and melting process at T(m) of fully crystalline α-D-glucose are similar. In both, the amorphous and crystalline phases, the same origin of heat capacity changes, in the T(g) and T(m) area, are attributable to molecular rotational motion. Degradation occurs simultaneously with the melting process of the crystalline phase. The stability of crystalline α-D-glucose was examined by TGA and TMDSC in the melting region, with the degradation shown to be resulting from changes of mass with temperature and time. The experimental heat capacities of fully crystalline and amorphous α-D-glucose were analyzed in reference to the solid, vibrational, and liquid heat capacities, which were approximated based on the ATHAS scheme and Data Bank. Copyright © 2011 Elsevier Ltd. All rights reserved.

The Melting Point of Palladium Using Miniature Fixed Points of Different Ceramic Materials: Part II—Analysis of Melting Curves and Long-Term Investigation

NASA Astrophysics Data System (ADS)

Edler, F.; Huang, K.

2016-12-01

Fifteen miniature fixed-point cells made of three different ceramic crucible materials (Al2O3, ZrO2, and Al2O3(86 %)+ZrO2(14 %)) were filled with pure palladium and used to calibrate type B thermocouples (Pt30 %Rh/Pt6 %Rh). A critical point by using miniature fixed points with small amounts of fixed-point material is the analysis of the melting curves, which are characterized by significant slopes during the melting process compared to flat melting plateaus obtainable using conventional fixed-point cells. The method of the extrapolated starting point temperature using straight line approximation of the melting plateau was applied to analyze the melting curves. This method allowed an unambiguous determination of an electromotive force (emf) assignable as melting temperature. The strict consideration of two constraints resulted in a unique, repeatable and objective method to determine the emf at the melting temperature within an uncertainty of about 0.1 μ V. The lifetime and long-term stability of the miniature fixed points was investigated by performing more than 100 melt/freeze cycles for each crucible of the different ceramic materials. No failure of the crucibles occurred indicating an excellent mechanical stability of the investigated miniature cells. The consequent limitation of heating rates to values below {± }3.5 K min^{-1} above 1100° C and the carefully and completely filled crucibles (the liquid palladium occupies the whole volume of the crucible) are the reasons for successfully preventing the crucibles from breaking. The thermal stability of the melting temperature of palladium was excellent when using the crucibles made of Al2O3(86 %)+ZrO2(14 %) and ZrO2. Emf drifts over the total duration of the long-term investigation were below a temperature equivalent of about 0.1 K-0.2 K.

Hot-melt extrusion--basic principles and pharmaceutical applications.

PubMed

Lang, Bo; McGinity, James W; Williams, Robert O

2014-09-01

Originally adapted from the plastics industry, the use of hot-melt extrusion has gained favor in drug delivery applications both in academia and the pharmaceutical industry. Several commercial products made by hot-melt extrusion have been approved by the FDA, demonstrating its commercial feasibility for pharmaceutical processing. A significant number of research articles have reported on advances made regarding the pharmaceutical applications of the hot-melt extrusion processing; however, only limited articles have been focused on general principles regarding formulation and process development. This review provides an in-depth analysis and discussion of the formulation and processing aspects of hot-melt extrusion. The impact of physicochemical properties of drug substances and excipients on formulation development using a hot-melt extrusion process is discussed from a material science point of view. Hot-melt extrusion process development, scale-up, and the interplay of formulation and process attributes are also discussed. Finally, recent applications of hot-melt extrusion to a variety of dosage forms and drug substances have also been addressed.

Transient Torque Method: A Fast and Non-Intrusive Technique to Simultaneously Determine Viscosity and Electrical Conductivity of Semiconducting and Metallic Melts

NASA Technical Reports Server (NTRS)

Li, C.; Ban, H.; Lin, B.; Scripa, R. N.; Su, C.; Lehoczky, S. L.; Zhu, S.

2003-01-01

A transient torque method was developed to rapidly and simultaneously determine the viscosity and electrical conductivity of semiconducting or metallic melts. The experimental setup is similar to that for the oscillation cup technique. The melt sample is sealed inside a fused silica ampoule, and the ampoule is suspended by a long quartz fiber to form a torsional oscillation system. A rotating magnetic field is used to induce a rotating flow in the conductive melt, which causes the ampoule to rotate along its axis. A sensitive angular detector is used to measure the deflection angle of the ampoule. Based on the transient behavior of the deflection angle as the rotating magnetic field is applied, the electrical conductivity and viscosity of the melt can be obtained simultaneously by numerically fitting the data to a set of governing equations. The transient torque viscometer was applied successfully to measure the viscosity and electrical conductivity of high purity mercury at 53.4 C. The results were in excellent agreement with the published data. The main advantage of the technique is that the measurement can be completed in one or two minutes, as opposed to the one or two-hour measurement time required by the oscillation cup technique. The method is non-intrusive; capable of rapid measurement of the viscosity of toxic, high vapor pressure melts at elevated temperatures. In addition, the transient torque viscometer can also be operated as an oscillation cup viscometer if desired.

Oceanographic Controls on the Variability of Ice-Shelf Basal Melting and Circulation of Glacial Meltwater in the Amundsen Sea Embayment, Antarctica

NASA Astrophysics Data System (ADS)

Kimura, Satoshi; Jenkins, Adrian; Regan, Heather; Holland, Paul R.; Assmann, Karen M.; Whitt, Daniel B.; Van Wessem, Melchoir; van de Berg, Willem Jan; Reijmer, Carleen H.; Dutrieux, Pierre

2017-12-01

Ice shelves in the Amundsen Sea Embayment have thinned, accelerating the seaward flow of ice sheets upstream over recent decades. This imbalance is caused by an increase in the ocean-driven melting of the ice shelves. Observations and models show that the ocean heat content reaching the ice shelves is sensitive to the depth of thermocline, which separates the cool, fresh surface waters from warm, salty waters. Yet the processes controlling the variability of thermocline depth remain poorly constrained. Here we quantify the oceanic conditions and ocean-driven melting of Cosgrove, Pine Island Glacier (PIG), Thwaites, Crosson, and Dotson ice shelves in the Amundsen Sea Embayment from 1991 to 2014 using a general circulation model. Ice-shelf melting is coupled to variability in the wind field and the sea-ice motions over the continental shelf break and associated onshore advection of warm waters in deep troughs. The layer of warm, salty waters at the calving front of PIG and Thwaites is thicker in austral spring (June-October) than in austral summer (December-March), whereas the seasonal cycle at the calving front of Dotson is reversed. Furthermore, the ocean-driven melting in PIG is enhanced by an asymmetric response to changes in ocean heat transport anomalies at the continental shelf break: melting responds more rapidly to increases in ocean heat transport than to decreases. This asymmetry is caused by the inland deepening of bathymetry and the glacial meltwater circulation around the ice shelf.

Microstructures define melting of molybdenum at high pressures

NASA Astrophysics Data System (ADS)

Hrubiak, Rostislav; Meng, Yue; Shen, Guoyin

2017-03-01

High-pressure melting anchors the phase diagram of a material, revealing the effect of pressure on the breakdown of the ordering of atoms in the solid. An important case is molybdenum, which has long been speculated to undergo an exceptionally steep increase in melting temperature when compressed. On the other hand, previous experiments showed nearly constant melting temperature as a function of pressure, in large discrepancy with theoretical expectations. Here we report a high-slope melting curve in molybdenum by synchrotron X-ray diffraction analysis of crystalline microstructures, generated by heating and subsequently rapidly quenching samples in a laser-heated diamond anvil cell. Distinct microstructural changes, observed at pressures up to 130 gigapascals, appear exclusively after melting, thus offering a reliable melting criterion. In addition, our study reveals a previously unsuspected transition in molybdenum at high pressure and high temperature, which yields highly textured body-centred cubic nanograins above a transition temperature.

Microstructures define melting of molybdenum at high pressures

PubMed Central

Hrubiak, Rostislav; Meng, Yue; Shen, Guoyin

2017-01-01

High-pressure melting anchors the phase diagram of a material, revealing the effect of pressure on the breakdown of the ordering of atoms in the solid. An important case is molybdenum, which has long been speculated to undergo an exceptionally steep increase in melting temperature when compressed. On the other hand, previous experiments showed nearly constant melting temperature as a function of pressure, in large discrepancy with theoretical expectations. Here we report a high-slope melting curve in molybdenum by synchrotron X-ray diffraction analysis of crystalline microstructures, generated by heating and subsequently rapidly quenching samples in a laser-heated diamond anvil cell. Distinct microstructural changes, observed at pressures up to 130 gigapascals, appear exclusively after melting, thus offering a reliable melting criterion. In addition, our study reveals a previously unsuspected transition in molybdenum at high pressure and high temperature, which yields highly textured body-centred cubic nanograins above a transition temperature. PMID:28248309

Detection of melting by X-ray imaging at high pressure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Li; Weidner, Donald J.

2014-06-15

The occurrence of partial melting at elevated pressure and temperature is documented in real time through measurement of volume strain induced by a fixed temperature change. Here we present the methodology for measuring volume strains to one part in 10{sup −4} for mm{sup 3} sized samples in situ as a function of time during a step in temperature. By calibrating the system for sample thermal expansion at temperatures lower than the solidus, the onset of melting can be detected when the melting volume increase is of comparable size to the thermal expansion induced volume change. We illustrate this technique withmore » a peridotite sample at 1.5 GPa during partial melting. The Re capsule is imaged with a CCD camera at 20 frames/s. Temperature steps of 100 K induce volume strains that triple with melting. The analysis relies on image comparison for strain determination and the thermal inertia of the sample is clearly seen in the time history of the volume strain. Coupled with a thermodynamic model of the melting, we infer that we identify melting with 2 vol.% melting.« less

Observed vulnerability of Filchner-Ronne Ice Shelf to wind-driven inflow of warm deep water.

PubMed

Darelius, E; Fer, I; Nicholls, K W

2016-08-02

The average rate of melting at the base of the large Filchner-Ronne Ice Shelf in the southern Weddell Sea is currently low, but projected to increase dramatically within the next century. In a model study, melt rates increase as changing ice conditions cause a redirection of a coastal current, bringing warm water of open ocean origin through the Filchner Depression and into the Filchner Ice Shelf cavity. Here we present observations from near Filchner Ice Shelf and from the Filchner Depression, which show that pulses of warm water already arrive as far south as the ice front. This southward heat transport follows the eastern flank of the Filchner Depression and is found to be directly linked to the strength of a wind-driven coastal current. Our observations emphasize the potential sensitivity of Filchner-Ronne Ice Shelf melt rates to changes in wind forcing.

Molybdenum Valence in Basaltic Silicate Melts: Effects of Temperature and Pressure

NASA Technical Reports Server (NTRS)

Danielson, L. R.; Righter, K.; Newville, M.; Sutton, S.; Choi, Y.; Pando, K.

2011-01-01

The metal-silicate partitioning behavior of molybdenum has been used as a test for equilibrium core formation hypotheses [for example, 1-6]. However, current models that apply experimental data to equilibrium core-mantle differentiation infer the oxidation state of molybdenum from solubility data or from multivariable coefficients from metal-silicate partitioning data [1,3,7]. Molybdenum, a multi-valent element with a valence transition near the fO2 of interest for core formation (approx.IW-2) will be sensitive to changes in fO2 of the system and silicate melt structure. In a silicate melt, Mo can occur in either 4+ or 6+ valence state, and Mo(6+) can be either octahedrally or tetrahedrally coordinated. Here we present X-ray absorption near edge structure (XANES) measurements of Mo valence in basaltic run products at a range of P, T, and fO2 and further quantify the valence transition of Mo.

Molybdenum Valence in Basaltic Silicate Melts

NASA Technical Reports Server (NTRS)

Danielson, L. R.; Righter, K.; Newville, M.; Sutton, S.; Pando, K.

2010-01-01

The moderately siderophile element molybdenum has been used as an indicator in planetary differentiation processes, and is particularly relevant to core formation [for example, 1-6]. However, models that apply experimental data to an equilibrium differentiation scenario infer the oxidation state of molybdenum from solubility data or from multivariable coefficients from metal-silicate partitioning data [1,3,7]. Partitioning behavior of molybdenum, a multivalent element with a transition near the J02 of interest for core formation (IW-2) will be sensitive to changes in JO2 of the system and silicate melt structure. In a silicate melt, Mo can occur in either 4+ or 6+ valence state, and Mo6+ can be either octahedrally or tetrahedrally coordinated. Here we present first XANES measurements of Mo valence in basaltic run products at a range of P, T, and JO2 and further quantify the valence transition of Mo.

Dynamic Response of a High Arctic Glacier to Melt and Runoff Variations

NASA Astrophysics Data System (ADS)

van Pelt, Ward J. J.; Pohjola, Veijo A.; Pettersson, Rickard; Ehwald, Lena E.; Reijmer, Carleen H.; Boot, Wim; Jakobs, Constantijn L.

2018-05-01

The dynamic response of High Arctic glaciers to increased runoff in a warming climate remains poorly understood. We analyze a 10-year record of continuous velocity data collected at multiple sites on Nordenskiöldbreen, Svalbard, and study the connection between ice flow and runoff within and between seasons. During the melt season, the sensitivity of ice motion to runoff at sites in the ablation and lower accumulation zone drops by a factor of 3 when cumulative runoff exceeds a local threshold, which is likely associated with a transition from inefficient (distributed) to efficient (channelized) drainage. Average summer (June-August) velocities are found to increase with summer ablation, while subsequent fall (September-November) velocities decrease. Spring (March-May) velocities are largely insensitive to summer ablation, which suggests a short-lived impact of summer melt on ice flow during the cold season. The net impact of summer ablation on annual velocities is found to be insignificant.

Observed vulnerability of Filchner-Ronne Ice Shelf to wind-driven inflow of warm deep water

PubMed Central

Darelius, E.; Fer, I.; Nicholls, K. W.

2016-01-01

The average rate of melting at the base of the large Filchner-Ronne Ice Shelf in the southern Weddell Sea is currently low, but projected to increase dramatically within the next century. In a model study, melt rates increase as changing ice conditions cause a redirection of a coastal current, bringing warm water of open ocean origin through the Filchner Depression and into the Filchner Ice Shelf cavity. Here we present observations from near Filchner Ice Shelf and from the Filchner Depression, which show that pulses of warm water already arrive as far south as the ice front. This southward heat transport follows the eastern flank of the Filchner Depression and is found to be directly linked to the strength of a wind-driven coastal current. Our observations emphasize the potential sensitivity of Filchner-Ronne Ice Shelf melt rates to changes in wind forcing. PMID:27481659

Combustion modeling of RDX, HMX and GAP with detailed kinetics

NASA Astrophysics Data System (ADS)

Davidson, Jeffrey Edward

A one-dimensional, steady-state numerical model of the combustion of homogeneous solid propellant has been developed. The combustion processes is modeled in three regions: solid, two-phase (liquid and gas) and gas. Conservation of energy and mass equations are solved in the two-phase and gas regions and the eigenvalue of the system (the mass burning rate) is converged by matching the heat flux at the interface of these two regions. The chemical reactions of the system are modeled using a global kinetic mechanism in the two-phase region and an elementary kinetic mechanism in the gas region. The model has been applied to RDX, HMX and GAP. There is very reasonable agreement between experimental data and model predictions for burning rate, temperature sensitivity, surface temperature, adiabatic flame temperature, species concentration profiles and melt-layer thickness. Many of the similarities and differences in the combustion of RDX and HMX are explained from sensitivity analysis results. The combustion characteristics of RDX and HMX are similar because of their similar chemistry. Differences in combustion characteristics arise due to differences in melting temperature, vapor pressure and initial decomposition steps. A reduced mechanism consisting of 18 species and 39 reactions was developed from the Melius-Yetter RDX mechanism (45 species, 232 reactions). This reduced mechanism reproduces most of the predictions of the full mechanism but is 7.5 times faster. Because of lack of concrete thermophysical property data for GAP, the modeling results are preliminary but indicate what type of experimental data is necessary before GAP can be modeled with more certainty.

Processes influencing formation of low-salinity high-biomass lenses near the edge of the Ross Ice Shelf

NASA Astrophysics Data System (ADS)

Li, Yizhen; McGillicuddy, Dennis J.; Dinniman, Michael S.; Klinck, John M.

2017-02-01

Both remotely sensed and in situ observations in austral summer of early 2012 in the Ross Sea suggest the presence of cold, low-salinity, and high-biomass eddies along the edge of the Ross Ice Shelf (RIS). Satellite measurements include sea surface temperature and ocean color, and shipboard data sets include hydrographic profiles, towed instrumentation, and underway acoustic Doppler current profilers. Idealized model simulations are utilized to examine the processes responsible for ice shelf eddy formation. 3-D model simulations produce similar cold and fresh eddies, although the simulated vertical lenses are quantitatively thinner than observed. Model sensitivity tests show that both basal melting underneath the ice shelf and irregularity of the ice shelf edge facilitate generation of cold and fresh eddies. 2-D model simulations further suggest that both basal melting and downwelling-favorable winds play crucial roles in forming a thick layer of low-salinity water observed along the edge of the RIS. These properties may have been entrained into the observed eddies, whereas that entrainment process was not captured in the specific eddy formation events studied in our 3-D model-which may explain the discrepancy between the simulated and observed eddies, at least in part. Additional sensitivity experiments imply that uncertainties associated with background stratification and wind stress may also explain why the model underestimates the thickness of the low-salinity lens in the eddy interiors. Our study highlights the importance of incorporating accurate wind forcing, basal melting, and ice shelf irregularity for simulating eddy formation near the RIS edge. The processes responsible for generating the high phytoplankton biomass inside these eddies remain to be elucidated. Appendix B. Details for the basal melting and mechanical forcing by the ice shelf edge.

Unlabeled oligonucleotides as internal temperature controls for genotyping by amplicon melting.

PubMed

Seipp, Michael T; Durtschi, Jacob D; Liew, Michael A; Williams, Jamie; Damjanovich, Kristy; Pont-Kingdon, Genevieve; Lyon, Elaine; Voelkerding, Karl V; Wittwer, Carl T

2007-07-01

Amplicon melting is a closed-tube method for genotyping that does not require probes, real-time analysis, or allele-specific polymerase chain reaction. However, correct differentiation of homozygous mutant and wild-type samples by melting temperature (Tm) requires high-resolution melting and closely controlled reaction conditions. When three different DNA extraction methods were used to isolate DNA from whole blood, amplicon Tm differences of 0.03 to 0.39 degrees C attributable to the extractions were observed. To correct for solution chemistry differences between samples, complementary unlabeled oligonucleotides were included as internal temperature controls to shift and scale the temperature axis of derivative melting plots. This adjustment was applied to a duplex amplicon melting assay for the methylenetetrahydrofolate reductase variants 1298A>C and 677C>T. High- and low-temperature controls bracketing the amplicon melting region decreased the Tm SD within homozygous genotypes by 47 to 82%. The amplicon melting assay was 100% concordant to an adjacent hybridization probe (HybProbe) melting assay when temperature controls were included, whereas a 3% error rate was observed without temperature correction. In conclusion, internal temperature controls increase the accuracy of genotyping by high-resolution amplicon melting and should also improve results on lower resolution instruments.

The Effect of Aging on the Microstructure of Selective Laser Melted Cu-Ni-Si

NASA Astrophysics Data System (ADS)

Ventura, Anthony P.; Marvel, Christopher J.; Pawlikowski, Gregory; Bayes, Martin; Watanabe, Masashi; Vinci, Richard P.; Misiolek, Wojciech Z.

2017-12-01

Precipitation hardening copper alloy C70250 was selectively laser melted to successfully produce components around 98 pct dense with high mechanical strength and electrical conductivity. Aging heat treatments were carried out at 723 K (450 °C) directly on as-printed samples up to 128 hours. Mechanical testing found that peak yield strength of around 590 MPa could be attained with an electrical conductivity of 34.2 pct IACS after 8 hours of aging. Conductivity continues to increase with further aging while the peak strength appears to be less sensitive to aging time exhibiting a broad range of time where near-peak properties exist. After aging for 128 hours, there is a drop in yield strength to 546 MPa with an increase in conductivity to 43.2 pct IACS. Electron microscopy analysis revealed nanometer-scale silicon-rich oxide particles throughout the material that persist during aging. Deformation twinning is observed in the peak-age condition after tensile testing and several strengthening mechanisms appear to be active to varying degrees throughout aging which account for the broad range of aging time where nearly the peak mechanical properties exist.

Fatigue behaviour of NiTi shape memory alloy scaffolds produced by SLM, a unit cell design comparison.

PubMed

Speirs, M; Van Hooreweder, B; Van Humbeeck, J; Kruth, J-P

2017-06-01

Selective laser melting (SLM) is an additive manufacturing technique able to produce complex functional parts via successively melting layers of metal powder. This process grants the freedom to design highly complex scaffold components to allow bone ingrowth and aid mechanical anchorage. This paper investigates the compression fatigue behaviour of three different unit cells (octahedron, cellular gyroid and sheet gyroid) of SLM nitinol scaffolds. It was found that triply periodic minimal surfaces display superior static mechanical properties in comparison to conventional octahedron beam lattice structures at identical volume fractions. Fatigue resistance was also found to be highly geometry dependent due to the effects of AM processing techniques on the surface topography and notch sensitivity. Geometries minimising nodal points and the staircase effect displayed the greatest fatigue resistance when normalized to yield strength. Furthermore oxygen analysis showed a large oxygen uptake during SLM processing which must be altered to meet ASTM medical grade standards and may significantly reduce fatigue life. These achieved fatigue properties indicate that NiTi scaffolds produced via SLM can provide sufficient mechanical support over an implants lifetime within stress range values experienced in real life. Copyright © 2017 Elsevier Ltd. All rights reserved.

Interim Reliability Evaluation Program: analysis of the Browns Ferry, Unit 1, nuclear plant. Main report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mays, S.E.; Poloski, J.P.; Sullivan, W.H.

1982-07-01

A probabilistic risk assessment (PRA) was made of the Browns Ferry, Unit 1, nuclear plant as part of the Nuclear Regulatory Commission's Interim Reliability Evaluation Program (IREP). Specific goals of the study were to identify the dominant contributors to core melt, develop a foundation for more extensive use of PRA methods, expand the cadre of experienced PRA practitioners, and apply procedures for extension of IREP analyses to other domestic light water reactors. Event tree and fault tree analyses were used to estimate the frequency of accident sequences initiated by transients and loss of coolant accidents. External events such as floods,more » fires, earthquakes, and sabotage were beyond the scope of this study and were, therefore, excluded. From these sequences, the dominant contributors to probable core melt frequency were chosen. Uncertainty and sensitivity analyses were performed on these sequences to better understand the limitations associated with the estimated sequence frequencies. Dominant sequences were grouped according to common containment failure modes and corresponding release categories on the basis of comparison with analyses of similar designs rather than on the basis of detailed plant-specific calculations.« less

Effects of ice shelf basal melt variability on evolution of Thwaites Glacier

NASA Astrophysics Data System (ADS)

Hoffman, M. J.; Fyke, J. G.; Price, S. F.; Asay-Davis, X.; Perego, M.

2017-12-01

Theory, modeling, and observations indicate that marine ice sheets on a retrograde bed, including Thwaites Glacier, Antarctica, are only conditionally stable. Previous modeling studies have shown that rapid, unstable retreat can occur when steady ice-shelf basal melting causes the grounding line to retreat past restraining bedrock bumps. Here we explore the initiation and evolution of unstable retreat of Thwaites Glacier when the ice-shelf basal melt forcing includes temporal variability mimicking realistic climate variability. We use the three-dimensional, higher-order Model for Prediction Across Scales-Land Ice (MPASLI) model forced with an ice shelf basal melt parameterization derived from previous coupled ice sheet/ocean simulations. We add sinusoidal temporal variability to the melt parameterization that represents shoaling and deepening of Circumpolar Deep Water. We perform an ensemble of 250 year duration simulations with different values for the amplitude, period, and phase of the variability. Preliminary results suggest that, overall, variability leads to slower grounding line retreat and less mass loss than steady simulations. Short period (2 yr) variability leads to similar results as steady forcing, whereas decadal variability can result in up to one-third less mass loss. Differences in phase lead to a large range in mass loss/grounding line retreat, but it is always less than the steady forcing. The timing of ungrounding from each restraining bedrock bump, which is strongly affected by the melt variability, is the rate limiting factor, and variability-driven delays in ungrounding at each bump accumulate. Grounding line retreat in the regions between bedrock bumps is relatively unaffected by ice shelf melt variability. While the results are sensitive to the form of the melt parameterization and its variability, we conclude that decadal period ice shelf melt variability could potentially delay marine ice sheet instability by up to many decades. However, it does not alter the eventual mass loss and sea level rise at centennial scales. The potential differences are significant enough to highlight the need for further observations to constrain the amplitude and period of the modes of climate and ocean variability relevant to Antarctic ice shelf melting.

Temperatures and Melt Water Contents at the Onset of Phenocryst Growth in Quaternary Nepheline-Normative Basalts Erupted along the Tepic-Zacoalco Rift in Western Mexico

NASA Astrophysics Data System (ADS)

Mesa, J.; Lange, R. A.; Pu, X.

2017-12-01

Nepheline-normative, high-Mg basalts erupted from the western Mexican arc, along the Tepic-Zacoalco rift (TZR), have a trace-element signature consistent with an asthenosphere source, whereas calc-alkaline basalts erupted from the central Mexican arc in the Michoacan-Guanajuato volcanic field (MGVF) have a trace-element signature consistent with a mantle source strongly affected by subduction fluids. In this study, olivine-melt thermometry and plagioclase-liquid hygrometry are used to constrain the temperature and melt water content of the alkaline TZR basalts. The presence of diffusion-limited growth textures in olivine and plagioclase phenocrysts provide preliminary evidence of rapid growth during ascent. For each basalt sample, a histogram of all analyzed olivines in each sample allows the most Fo-rich composition to be identified, which matches the calculated composition at the liquidus via MELTS (Ghiorso & Sack, 1995; Asimow & Ghiorso, 1998) at fO2 values of QFM +2. Therefore a newly developed olivine-melt thermometer, based on DNiol/liq (Pu et al., 2017) was used to calculate temperature at the onset of olivine crystallization during ascent. Temperatures range from 1076-1247°C, whereas those calculated using an olivine-melt thermometer based on DMgol/liq range from 1141-1236 °C. Olivine-melt thermometers based on DMgol/liq are sensitive to melt H2O content, therefore ΔT = TMg - TNi (≤ 82 degrees) may be used as a qualitative indicator of melt H2O (≤ 2.6 wt% H2O; Pu et al., 2017). When temperatures from the Ni-thermometer are applied to the most calcic plagioclase in each sample (Waters & Lange, 2015), calculated melt H2O contents range from 1.3-1.9 (± 0.4) wt%. These values are significantly lower than those obtained from high-Mg calc-alkaline basalts from the MGVF using similar methods (1.9-5.0 wt%; Pu et al., 2017), consistent with a reduced involvement of slab-derived fluids in the origin of the alkaline TZR basalts from western Mexico.

Metastability and instability of organic crystalline substances.

PubMed

Randzio, Stanislaw L; Kutner, Andrzej

2008-02-07

Discovery of an unexpected and thermodynamically paradoxical transition from a crystalline state to an amorphous dense glassy state induced in pure organic substances by a direct absorption of a quantity of heat under atmospheric pressure and its detailed analysis performed with the use of a sensitive scanning transitiometer are described. The obtained results present first experimental precise evidence for understanding the mechanism of such a structural instability of crystalline substances in the form of c-a transition. The observed c-a transition is a purely physical phenomenon, occurring between two nonequilibrium states, a metastable crystalline phase and a dense glass, occurring through a local transient phenomenon of virtual melting. The metastable state of a crystalline substance can be caused by existence of a number of crystalline imperfections created either during crystallization or by external actions. By measuring extremely sensitive energetic effects, we found the present method to be helpful for quantitative determination of the critical number of imperfections in a crystalline solid, which make it metastable and for an indication under which conditions such a metastable crystalline form becomes unstable. By performing the transitiometric analysis of c-a transitions with two polymorphs of rosiglitazone maleate, we demonstrated to what extent this analysis is important in investigation of stability of crystalline components of drugs.

Adaptations of a physical-based hydrological model for alpine catchments. Application to the upper Durance catchment.

NASA Astrophysics Data System (ADS)

Lafaysse, Matthieu; Hingray, Benoit

2010-05-01

The impact of global change on water resources is expected to be especially pronounced in mountainous areas. Future hydrological scenarios required for impact studies are classically simulated with hydrological models from future meteorological scenarios based on GCMs outputs. Future hydrological regimes of French rivers were estimated following this methodology by Boé et al. (2009) with the physical-based hydrological model SAFRAN-ISBA-MODCOU (SIM), developed by Météo-France. Scenarios obtained for the Alps seem however not very reliable due to the poor performance achieved by the model for the present climate over this region. This work presents possible improvements of SIM for a more relevant simulation of alpine catchments hydrological behavior. Results obtained for the upper Durance catchment (3580 km2) are given for illustration. This catchment is located in Southern French Alps. Its outlet is the Serre-Ponçon lake, a large dam operated for hydropower production, with a key role for water supply in southeastern France. With altitudes ranging from 700 to 4100 meters, the catchment presents highly seasonal flows: minimum and maximum discharges are observed in winter and spring respectively due to snow accumulation and melt, low flows are sustained by glacier melt in late summer (39 km2 are covered by glaciers), major floods can be observed in fall due to large liquid precipitation amounts. Two main limitations of SIM were identified for this catchment. First the 8km-side grid discretization gives a bad representation of the spatial variability of hydrological processes induced by elevation and orientation. Then, low flows are not well represented because the model doesn't include deep storage in aquifers nor ice melt from glaciers. We modified SIM accordingly. For the first point, we applied a discretization based on topography : we divided the catchment in 9 sub-catchments and further 300 meters elevation bands. The vertical variability of meteorological inputs and vegetation cover could be thus better accounted for. Then, each elevation band is divided in 7 exposure classes, in order to represent the influence on snow cover of the solar radiation spatial variability . This discretisation results in 539 Hydrological Units where hydrological processes are assumed to be homogeneous. For the second point, we first included the possibility for glacier melt in previous discretization. We next added a conceptual non-linear underground reservoir in order to simulate water retention by aquifers. These adaptations lead to a clear improvement of simulations for all the hydrometric stations. Daily simulated discharges fit well with measurements (Nash score = 0.8). The model has a good ability to simulate interannual variability and it is robust under a long simulation period (1959-2006). This encourages us to use it in a modified climate context. We studied the effect of each model improvement with a set of sensitivity tests. Accounting for elevation bands allows simulating more persistent snow cover at high altitudes, contributing later to river flows. Adding underground storage leads to delay the snowmelt runoff transfer in river. The exposure influence is not so sensitive for discharges simulation, but it gives a more accurate description of the spatial variability of snow cover. Although glaciered areas are very small compared to total basin area, a better simulation of summer low flows is obtained including a glacier melt module. Despite previous improvements, winter low flows are still slightly underestimated. As suggested by a simple sensitivity analysis, this could be partly due to the fact that the model doesn't correctly simulate basal snowmelt by ground heat flow.

Primary melt and fluid inclusions in regenerated crystals and phenocrysts of olivine from kimberlites of the Udachnaya-East Pipe, Yakutia: The problem of the kimberlite melt

NASA Astrophysics Data System (ADS)

Tomilenko, A. A.; Kuzmin, D. V.; Bul'bak, T. A.; Sobolev, N. V.

2017-08-01

The primary melt and fluid inclusions in regenerated zonal crystals of olivine and homogeneous phenocrysts of olivine from kimberlites of the Udachnaya-East pipe, were first studied by means of microthermometry, optic and scanning electron microscopy, electron and ion microprobe analysis (SIMS), inductively coupled plasma mass-spectrometry (ICP MSC), and Raman spectroscopy. It was established that olivine crystals were regenerated from silicate-carbonate melts at a temperature of 1100°C.

Partial melting of the St. Severin (LL) and Lost City (H) ordinary chondrites: One step backwards and two steps forward

NASA Technical Reports Server (NTRS)

Jurewicz, A. J. G.; Jones, J. H.; Mittlefehldt, D. W.

1994-01-01

This study looks at partial melting in H and LL chondrites at nearly one atmosphere of total pressure as part of a continuing study of the origins of basaltic achondrites. Previously, melting experiments on anhydrous CM and CV chondrites showed that, near its solidus, the CM chondrite produced melts having major element chemistries similar to the Sioux County eucrite; but, the pyroxenes in the residuum were too iron-rich to form diogenites. Our preliminary results from melting experiments on ordinary (H, LL) chondrites suggested that, although the melts did not look like any known eucrites, pyroxenes from these charges bracketed the compositional range of pyroxenes found in diogenites. We had used the Fe/Mg exchange coefficients calculated for olivine, pyroxene, and melt in these charges to evaluate the approach to equilibrium, which appeared to be excellent. Unfortunately, mass balance calculations later indicated to us that, unlike our CM and CV charges, the LL and H experimental charges had lost significant amounts of iron to their (Pt or PtRh) supports. Apparently, pyroxene stability in chondritic systems is quite sensitive to the amount of FeO, and it was this unrecognized change in the bulk iron content which had stabilized the high temperature, highly magnesian pyroxenes. Accordingly, this work reinvestigates the phase equilibria of ordinary chondrites, eliminating iron and nickel loss, and reports significant differences. It also looks closely at how the iron and sodium in the bulk charge affect the stability of pyroxene, and it comments on how these new results apply to the problems of diogenite and eucrite petrogenesis.

Under-ice melt ponds and the oceanic mixed layer

NASA Astrophysics Data System (ADS)

Flocco, D.; Smith, N.; Feltham, D. L.

2017-12-01

Under-ice melt ponds are pools of freshwater beneath the Arctic sea ice that form when melt from the surface of the sea ice percolates down through the porous sea ice. Through double diffusion, a sheet of ice can form at the interface between the ocean and the under-ice melt pond, completely isolating the pond from the mixed layer below and forming a false bottom to the sea ice. As such, they insulate the sea ice from the ocean below. It has been estimated that these ponds could cover between 5 and 40 % of the base of the Arctic sea ice, and so could have a notable impact on the mass balance of the sea ice. We have developed a one-dimensional model to calculate the thickness and thermodynamic properties of a slab of sea ice, an under-ice melt pond, and a false bottom, as these layers evolve. Through carrying out sensitivity studies, we have identified a number of interesting ways that under-ice melt ponds affect the ice above them and the rate of basal ablation. We found that they result in thicker sea ice above them, due to their insulation of the ice, and have found a possible positive feedback cycle in which less ice will be gained due to under-ice melt ponds as the Arctic becomes warmer. More recently, we have coupled this model to a simple Kraus-Turner type model of the oceanic mixed layer to investigate how these ponds affect the ocean water beneath them. Through altering basal ablation rates and ice thickness, they change the fresh water and salt fluxes into the mixed layer, as well as incoming radiation. Multi-year simulations have, in particular, shown how these effects work on longer time-scales.

Pore Formation and Mobility Investigation (PPMI): Description and Initial Analysis of Experiments Conducted aboard the International Space Station

NASA Technical Reports Server (NTRS)

Grugel, R. N.; Anilkumar, A. V.; Lee, C. P.

2003-01-01

Flow visualization experiments during the controlled directional melt back and re-solidification of succinonitrile (SCN) and SCN-water mixtures were conducted using the Pore Formation and Mobility Investigation (PFMI) apparatus in the glovebox facility (GBX) aboard the International Space Station. The study samples were initially 'cast' on earth under 450 millibar of nitrogen into 1 cm ID glass sample tubes approximately 30 cm in length, containing 6 in situ thermocouples. During the Space experiments, the processing parameters and flow visualization settings are remotely monitored and manipulated from the ground Telescience Center (TSC). The ground solidified sample is first subjected to a unidirectional melt back, generally at 10 microns per second, with a constant temperature gradient ahead of the melting interface. Bubbles of different sizes are seen to initiate at the melt interface and, upon release from the melting solid, translate at different speeds in the temperature field ahead of them before coming to rest. Over a period of time these bubbles dissolve into the melt. The gas-laden liquid is then directionally solidified in a controlled manner, generally starting at a rate of 1 micron /sec. Observation and preliminary analysis of bubble formation and mobility in pure SCN samples during melt back and the subsequent structure resulting during gas generation upon re-solidification are presented and discussed.

Pore Formation and Mobility Investigation (PFMI): Description and Initial Analysis of Experiments Conducted aboard the International Space Station

NASA Technical Reports Server (NTRS)

Grugel, R. N.; Anilkumar, A. V.; Lee, C. P.

2002-01-01

Flow visualization experiments during the controlled directional melt back and re-solidification of succinonitrile (SCN) and SCN-water mixtures were conducted using the Pore Formation and Mobility Investigation (PFMI) apparatus in the glovebox facility (GBX) aboard the International Space Station. The study samples were initially "cast" on earth under 450 millibar of nitrogen into 1 cm ID glass sample tubes approximately 30 cm in length, containing 6 in situ thermocouples. During the Space experiments, the processing parameters and flow visualization settings are remotely monitored and manipulated from the ground Telescience Center (TSC). The ground solidified sample is first subjected to a unidirectional melt back, generally at 10 microns per second, with a constant temperature gradient ahead of the melting interface. Bubbles of different sizes are seen to initiate at the melt interface and, upon release from the melting solid, translate at different speeds in the temperature field ahead of them before coming to rest. Over a period of time these bubbles dissolve into the melt. The gas-laden liquid is then directionally solidified in a controlled manner, generally starting at a rate of 1 micron /sec. Observation and preliminary analysis of bubble formation and mobility in pure SCN samples during melt back and the subsequent structure resulting during gas generation upon re-solidification are presented and discussed.

Impact, thermal, and shock sensitivity of molten TNT and of asphalt-contaminated molten TNT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mainiero, R.J.; Miron, Y.; Kwak, S.S.W.

1996-12-01

The research reported here was part of an effort to evaluate the safety of a process to recover TNT from MK-9 depth bombs by the autoclave meltout process. In this process the depth bombs are heated to 121 C so that the TNT will melt and run into a vat. Unfortunately, asphalt lining the inside surface of the bomb also melts and flows out with the TNT. Testing was conducted on molten TNT and molten TNT contaminated with 2 pct asphalt at 90, 100, 110, 120, 125, and 130 C. In the liquid drop test apparatus with a 2-kg weight,more » the molten TNT yielded a 50 pct probability of initiation at a drop height of 6.5 cm at 110 C, decreasing to 4.5 cm at 130 C. Asphalt-contaminated TNT was somewhat less impact-sensitive than pure TNT at temperatures of 110 to 125 C, but became more sensitive at 130 C. There is a 50 pct probability of initiation at a drop height of 7.8 cm at 110 C, decreasing to 3.3 cm at 130 C. In the card gap test, the molten TNT detonated at high velocity for a gap of 0.25 inches at 90 to 125 C and detonated at high velocity for a gap of 0.5 inches at 130 C. For gaps of 0.5 to 3 inches at 90 to 125 C and 0.75 inches to 3 inches at 130 C, the TNT did not detonate at high velocity but produced a violent explosion that caused significant damage to the test fixture. The thermal analysis test results showed that when asphalt is present in TNT, it greatly accelerates the exothermic decomposition of TNT, starting at temperatures near 200 C. It appears that at relatively low shock stimulus levels, the molten TNT may be undergoing a low velocity detonation, wherein the shock wave traveling through the gap test pipe cavitates the molten TNT, greatly increasing its sensitivity. These results are crucial for assuring continued safety in recovering TNT from munitions through the autoclave meltout process.« less

Mineralogy and Microstructures of Shock-Induced Melt Veins in Chondrites

NASA Technical Reports Server (NTRS)

Sharp, Thomas G.

2000-01-01

The applicability of phase equilibrium data to the interpretation of shock-induced melt veins can only be tested by a detailed study of melt- vein mineralogy to see how high-pressure assemblages vary as a function of shock conditions inferred from other indicators. We have used transmission electron microscopy (TEM), analytical electron microscopy (AEM), scanning electron microscopy (SEM), electron microprobe analysis (EMA) and optical petrography to characterize the mineralogy, microstructures, and compositions of melt veins and associated high-pressure minerals in shocked chondrites and SNC meteorites. In the processes, we have gained a better understanding of what melt veining can tell us about shock conditions and we have discovered new mineral phases in chondritic and SNC meteorites.

Numerical analysis of fluid flow and heat transfer during melting inside a cylindrical container for thermal energy storage system

NASA Astrophysics Data System (ADS)

Bellan, Selvan; Cheok, Cho Hyun; Gokon, Nobuyuki; Matsubara, Koji; Kodama, Tatsuya

2017-06-01

This paper presents a numerical analysis of unconstrained melting of high temperature(>1000K) phase change material (PCM) inside a cylindrical container. Sodium chloride and Silicon carbide have been used as phase change material and shell of the capsule respectively. The control volume discretization approach has been used to solve the conservation equations of mass, momentum and energy. The enthalpy-porosity method has been used to track the solid-liquid interface of the PCM during melting process. Transient numerical simulations have been performed in order to study the influence of radius of the capsule and the Stefan number on the heat transfer rate. The simulation results show that the counter-clockwise Buoyancy driven convection over the top part of the solid PCM enhances the melting rate quite faster than the bottom part.

Does Sea Level Change when a Floating Iceberg Melts?

ERIC Educational Resources Information Center

Lan, Boon Leong

2010-01-01

On the answer page to a recent "Figuring Physics" question, the cute mouse asks another question: "Does the [sea] water level change if the iceberg melts?" The conventional answer is "no." However, in this paper I will show through a simple analysis involving Archimedes' principle that the sea level will rise. The analysis shows the wrong…

The Effect of fO2 on Partition Coefficients of U and Th between Garnet and Silicate Melt

NASA Astrophysics Data System (ADS)

Huang, F.; He, Z.; Schmidt, M. W.; Li, Q.

2014-12-01

Garnet is one of the most important minerals controlling partitioning of U and Th in the upper mantle. U is redox sensitive, while Th is tetra-valent at redox conditions of the silicate Earth. U-series disequilibria have provided a unique tool to constrain the time-scales and processes of magmatism at convergent margins. Variation of garnet/meltDU/Th with fO2 is critical to understand U-series disequilibria in arc lavas. However, there is still no systematic experimental study about the effect of fO2 on partitioning of U and Th between garnet and melt. Here we present experiments on partitioning of U, Th, Zr, Hf, Nb, Ta, and REE between garnet and silicate melts at various fO2. The starting material was hydrous haplo-basalt. The piston cylinder experiments were performed with Pt double capsules with C-CO, MnO-Mn3O4 (MM), and hematite-magnetite (HM) buffers at 3 GPa and 1185-1230 oC. The experiments produced garnets with diameters > 50μm and quenched melt. Major elements were measured by EMPA at ETH Zurich. Trace elements were determined using LA-ICP-MS at Northwestern University (Xi'an, China) and SIMS (Cameca1280 at the Institute of Geology and Geophysics, Beijing, China), producing consistent partition coefficient data for U and Th. With fO2 increasing from CCO to MM and HM, garnet/meltDU decreases from 0.041 to 0.005, while garnet/meltDTh ranges from 0.003 to 0.007 without correlation with fO2. Notably, garnet/meltDTh/U increases from 0.136 at CCO to 0.41 at HM. Our results indicate that U is still more compatible than Th in garnet even at the highest fO2 considered for the subarc mantle wedge (~NNO). Therefore, we predict that if garnet is the dominant phase controlling U-Th partitioning during melting of the mantle wedge, melts would still have 230Th excess over 238U. This explains why most young continental arc lavas have 230Th excess. If clinopyroxene is the dominant residual phase during mantle melting, U could be more incompatible than Th at high fO2 because increasing fO2 can increase clinopyroxene/meltDTh/U by more than two magnitudes (Lundstrom et al. 1994). In this case, in-growth melting of the mantle can produce 238U excess over 230Th observed in the oceanic arc lavas.

Possible contribution of ice-sheet/lithosphere interactions to past glaciological changes in Greenland

NASA Astrophysics Data System (ADS)

Alley, R. B.; Parizek, B. R.; Anandakrishnan, S.; Pollard, D.; Stevens, N. T.; Pourpoint, M.

2017-12-01

Ice-lithosphere interactions may have influenced the history of ice-sheet sensitivity to climate change. The Greenland ice sheet (GIS) is sensitive to warming, and is likely to be largely removed if subjected to relatively small additional temperature increases. The recent report (Schaefer et al., 2016, Nature) of near-complete GIS removal under modest Pleistocene forcing suggests that GIS sensitivity may be even greater than generally modeled, but lack of major Holocene retreat is more consistent with existing models. As shown by Stevens et al. (2016, JGR), peak lithospheric flexural stresses associated with ice-age GIS cycling are of the same order as dike-driving stresses in plutonic systems, and migrate over ice-age cycles. The full analysis by Stevens et al. suggests the possibility that the onset of cyclic ice-sheet loading allowed deep melt associated with the passage of the Icelandic hot spot beneath Greenland to work up though the crust to or near the base of the ice sheet, helping explain the anomalous geothermal heat fluxes observed at the head of the Northeast Greenland Ice Stream and elsewhere in the northern part of GIS. If ice-age cycling aided extraction of an existing reservoir of melted rock, then geothermal heat flux would have risen with the onset of extraction and migration, but with a subsequent fall associated with reservoir depletion. Simple parameterized flow-model simulations confirm intuition that a higher geothermal flux makes deglaciation easier, with the northern part of the ice sheet especially important. Large uncertainties remain in quantification, but we suggest the hypothesis that, following the onset of ice-age cycling, deglaciation of the GIS first became easier and then more difficult in response to feedbacks involving the ice sheet and the geological system beneath. In turn, this suggests that evidence of past deglaciation under moderate forcing is consistent with existing ice-sheet models.

Influence Of The Redox State On The Electrical Conductivity Of Basaltic Melts

NASA Astrophysics Data System (ADS)

Pommier, A.; Gaillard, F.; Pichavant, M.

2007-12-01

The electrical conductivity is an efficient probe of mass transfer processes within silicate melts and magmas. Previous studies have established that the electrical conductivity is sensitive to parameters such as temperature, melt composition and pressure. In contrast to what is known for Fe-bearing minerals, little attention has been given to the influence of redox state on the electrical conductivity of melts. Experiments were performed on tephritic and basaltic compositions respectively from Mt. Vesuvius and Pu'u 'O'o. Measurements were carried out on cylindrical glass samples (OD: 6 mm, ID: 1 mm, L: 8 mm) drilled from glass obtained by fusing each rock sample at 1400°C in air. A two-electrode configuration was adopted, with the electrical impedance being radially measured. A Pt wire was used as the internal electrode whereas a Pt tube served as the external electrode. Experiments were conducted at 1 atm in a vertical furnace between 1200°C and 1300°C, both in air and in a CO-CO2 atmosphere at a fO2 corresponding to NNO+1. Both reduction and oxidation experiments were performed. In reduction experiments (pure CO2 then CO-CO2 gas mixture), electrical conductivities progressively increase with time. The reverse is observed in oxidation experiments (CO-CO2 gas mixture then pure CO2). These variations of electrical conductivities are correlated with modifications of the Fe2+/Fe3+ ratio in the melt, and are consistent with the respective structural roles of Fe2+ and Fe3+. In both types of experiments, a minimum of about 400 mn is necessary before a plateau is reached, interpreted to reflect the kinetics of attainment of the equilibrium Fe2+/Fe3+ ratio in the melt. Differences between plateau and initial values are typically of a few ohms, much higher than the sensitivity of our measurements (better than 0.1 ohm). When increasing temperature, the time required for reaching plateau values decreases. At NNO+1, the electrical activation energy (Ea) was determined for both compositions: Ea=137 kJ/mol (tephrite) and 73 kJ/mol (basalt). Further experiments are necessary to quantify the influence of redox state on electrical conductivity, especially at fO2 below NNO+1.

Melt-induced seismic anisotropy and magma assisted rifting in Ethiopia: Evidence from surface waves

NASA Astrophysics Data System (ADS)

Bastow, I. D.; Pilidou, S.; Kendall, J.-M.; Stuart, G. W.

2010-06-01

The East African rift in Ethiopia is unique worldwide because it captures the final stages of transition from continental rifting to seafloor spreading. A recent study there has shown that magma intrusion plays an important role during the final stages of continental breakup, but the mechanism by which it is incorporated into the extending plate remains ambiguous: wide-angle seismic data and complementary geophysical tools such as gravity analysis are not strongly sensitive to the geometry of subsurface melt intrusions. Studies of shear wave splitting in near-vertical SKS phases beneath the transitional Main Ethiopian Rift (MER) provide strong and consistent evidence for a rift-parallel fast anisotropic direction. However, it is difficult to discriminate between oriented melt pocket (OMP) and lattice preferred orientation (LPO) causes of anisotropy based on SKS study alone. The speeds of horizontally propagating Love (SH) and Rayleigh (SV) waves vary in similar fashions with azimuth for LPO- and OMP-induced anisotropy, but their relative change is distinctive for each mechanism. This diagnostic is exploited by studying the propagation of surface waves from a suite of azimuths across the MER. Anisotropy is roughly perpendicular to the absolute plate motion direction, thus ruling out anisotropy due to the slowly moving African Plate. Instead, three mechanisms for anisotropy act beneath the MER: periodic thin layering of seismically fast and slow material in the uppermost ˜10 km, OMP between ˜20-75 km depth, and olivine LPO in the upper mantle beneath. The results are explained best by a model in which low aspect ratio melt inclusions (dykes and veins) are being intruded into an extending plate during late stage breakup. The observations from Ethiopia join a growing body of evidence from rifts and passive margins worldwide that shows magma intrusion plays an important role in accommodating extension without marked crustal thinning.

Value of PAX1 Methylation Analysis by MS-HRM in the Triage of Atypical Squamous Cells of Undetermined Significance.

PubMed

Li, Shi-Rong; Wang, Zhen-Ming; Wang, Yu-Hui; Wang, Xi-Bo; Zhao, Jian-Qiang; Xue, Hai-Bin; Jiang, Fu-Guo

2015-01-01

Detection of cervical high grade lesions in patients with atypical squamous cells of undetermined significance (ASCUS) is still a challenge. Our study tested the efficacy of the paired boxed gene 1 (PAX1) methylation analysis by methylation-sensitive high-resolution melting (MS-HRM) in the detection of high grade lesions in ASCUS and compared performance with the hybrid capture 2 (HC2) human papillomavirus (HPV) test. A total of 463 consecutive ASCUS women from primary screening were selected. Their cervical scrapings were collected and assessed by PAX1 methylation analysis (MS-HRM) and high-risk HPV-DNA test (HC2). All patients with ASCUS were admitted to colposcopy and cervical biopsies. The Chi- square test was used to test the differences of PAX1 methylation or HPV infection between groups. The specificity, sensitivity, and accuracy for detecting CIN2 + lesions were: 95.6%, 82.4%, and 94.6%, respectively, for the PAX1 MS-HRM test; and 59.7%, 64.7%, and 60.0% for the HC2 HPV test. The PAX1 methylation analysis by MS-HRM demonstrated a better performance than the high-risk HPV-DNA test for the detection of high grade lesions (CIN2 +) in ASCUS cases. This approach could screen out the majority of low grade cases of ASCUS, and thus reduce the referral rate to colposcopy.

Model of melting (crystallization) process of the condensed disperse phase in the smoky plasmas

NASA Astrophysics Data System (ADS)

Dragan, G. S.; Kolesnikov, K. V.; Kutarov, V. V.

2018-01-01

The paper presents an analysis of the causes of a formation of spatial ordered grain structures in a smoky plasma. We are modeling the process of melting (crystallization) of a condensed phase in this environment taking into account the screened electrostatic interaction and the diffusion-drift force. We discuss an influence of the charge on the melting temperatures.

Rapid quantification and sex determination of forensic evidence materials.

PubMed

Andréasson, Hanna; Allen, Marie

2003-11-01

DNA quantification of forensic evidence is very valuable for an optimal use of the available biological material. Moreover, sex determination is of great importance as additional information in criminal investigations as well as in identification of missing persons, no suspect cases, and ancient DNA studies. While routine forensic DNA analysis based on short tandem repeat markers includes a marker for sex determination, analysis of samples containing scarce amounts of DNA is often based on mitochondrial DNA, and sex determination is not performed. In order to allow quantification and simultaneous sex determination on minute amounts of DNA, an assay based on real-time PCR analysis of a marker within the human amelogenin gene has been developed. The sex determination is based on melting curve analysis, while an externally standardized kinetic analysis allows quantification of the nuclear DNA copy number in the sample. This real-time DNA quantification assay has proven to be highly sensitive, enabling quantification of single DNA copies. Although certain limitations were apparent, the system is a rapid, cost-effective, and flexible assay for analysis of forensic casework samples.

Controls on the early Holocene collapse of the Bothnian Sea Ice Stream

NASA Astrophysics Data System (ADS)

Clason, Caroline C.; Greenwood, Sarah L.; Selmes, Nick; Lea, James M.; Jamieson, Stewart S. R.; Nick, Faezeh M.; Holmlund, Per

2016-12-01

New high-resolution multibeam data in the Gulf of Bothnia reveal for the first time the subglacial environment of a Bothnian Sea Ice Stream. The geomorphological record suggests that increased meltwater production may have been important in driving rapid retreat of Bothnian Sea Ice during deglaciation. Here we apply a well-established, one-dimensional flow line model to simulate ice flow through the Gulf of Bothnia and investigate controls on retreat of the ice stream during the post-Younger Dryas deglaciation of the Fennoscandian Ice Sheet. The relative influence of atmospheric and marine forcings are investigated, with the modeled ice stream exhibiting much greater sensitivity to surface melting, implemented through surface mass balance and hydrofracture-induced calving, than to submarine melting or relative sea level change. Such sensitivity is supported by the presence of extensive meltwater features in the geomorphological record. The modeled ice stream does not demonstrate significant sensitivity to changes in prescribed ice stream width or overall bed slope, but local variations in basal topography and ice stream width result in nonlinear retreat of the grounding line, notably demonstrating points of short-lived retreat slowdown on reverse bed slopes. Retreat of the ice stream was most likely governed by increased ice surface meltwater production, with the modeled retreat rate less sensitive to marine forcings despite the marine setting.

Piezo-thermal Probe Array for High Throughput Applications

PubMed Central

Gaitas, Angelo; French, Paddy

2012-01-01

Microcantilevers are used in a number of applications including atomic-force microscopy (AFM). In this work, deflection-sensing elements along with heating elements are integrated onto micromachined cantilever arrays to increase sensitivity, and reduce complexity and cost. An array of probes with 5–10 nm gold ultrathin film sensors on silicon substrates for high throughput scanning probe microscopy is developed. The deflection sensitivity is 0.2 ppm/nm. Plots of the change in resistance of the sensing element with displacement are used to calibrate the probes and determine probe contact with the substrate. Topographical scans demonstrate high throughput and nanometer resolution. The heating elements are calibrated and the thermal coefficient of resistance (TCR) is 655 ppm/K. The melting temperature of a material is measured by locally heating the material with the heating element of the cantilever while monitoring the bending with the deflection sensing element. The melting point value measured with this method is in close agreement with the reported value in literature. PMID:23641125

Lake seasonality across the Tibetan Plateau and their varying relationship with regional mass changes and local hydrology

NASA Astrophysics Data System (ADS)

Lei, Yanbin; Yao, Tandong; Yang, Kun; Sheng, Yongwei; Kleinherenbrink, Marcel; Yi, Shuang; Bird, Broxton W.; Zhang, Xiaowen; Zhu, La; Zhang, Guoqing

2017-01-01

The recent growth and deepening of inland lakes in the Tibetan Plateau (TP) may be a salient indicator of the consequences of climate change. The seasonal dynamics of these lakes is poorly understood despite this being potentially crucial for disentangling contributions from glacier melt and precipitation, which are all sensitive to climate, to lake water budget. Using in situ observations, satellite altimetry and gravimetry data, we identified two patterns of lake level seasonality. In the central, northern, and northeastern TP, lake levels are characterized by considerable increases during warm seasons and decreases during cold seasons, which is consistent with regional mass changes related to monsoon precipitation and evaporation. In the northwestern TP, however, lake levels exhibit dramatic increases during both warm and cold seasons, which deviate from regional mass changes. This appears to be more connected with high spring snowfall and large summer glacier melt. The variable lake level response to different drivers indicates heterogeneous sensitivity to climate change between the northwestern TP and other regions.

Identification of feline polycystic kidney disease mutation using fret probes and melting curve analysis.

PubMed

Criado-Fornelio, A; Buling, A; Barba-Carretero, J C

2009-02-01

We developed and validated a real-time polymerase chain reaction (PCR) assay using fluorescent hybridization probes and melting curve analysis to identify the PKD1 exon 29 (C-->A) mutation, which is implicated in polycystic kidney disease of cats. DNA was isolated from peripheral blood of 20 Persian cats. The employ of the new real-time PCR and melting curve analysis in these samples indicated that 13 cats (65%) were wild type homozygotes and seven cats (35%) were heterozygotes. Both PCR-RFLP and sequencing procedures were in full agreement with real-time PCR test results. Sequence analysis showed that the mutant gene had the expected base change compared to the wild type gene. The new procedure is not only very reliable but also faster than the techniques currently applied for diagnosis of the mutation.

Transient Torque Technique for Viscosity and Electrical Conductivity Determination of Semiconducting Liquids

NASA Technical Reports Server (NTRS)

Li, C.; Scripa, R. N.; Ban, H.; Lin, B.; Su, C.-H.; Lehoczky, S. L.; Feth, S.; Zhu, S.; Curreri, Peter A. (Technical Monitor)

2002-01-01

A novel apparatus based on transient torque technique is constructed in MSFC/NASA. The apparatus uses a 125um diameter quartz fiber as torsion wire. A high sensitive angular detector is implemented to measure the deflection angle of the crucible containing the liquid. A rotating magnetic field (RMF) is used to induce a rotating flow of a conducting or semiconducting melts. By measuring the magnitude and transient behavior of the induced deflection angle, the electrical conductivity and viscosity of the melt can be measured simultaneously. High purity elements namely Hg, Ga, Zn and Te are tested at room temperature and high temperature up to 900 C.

Large area sheet task. Advanced dendritic web growth development. [silicon films

NASA Technical Reports Server (NTRS)

Duncan, C. S.; Seidensticker, R. G.; Mchugh, J. P.; Hopkins, R. H.; Meier, D.; Frantti, E.; Schruben, J.

1981-01-01

The development of a silicon dendritic web growth machine is discussed. Several refinements to the sensing and control equipment for melt replenishment during web growth are described and several areas for cost reduction in the components of the prototype automated web growth furnace are identified. A circuit designed to eliminate the sensitivity of the detector signal to the intensity of the reflected laser beam used to measure melt level is also described. A variable speed motor for the silicon feeder is discussed which allows pellet feeding to be accomplished at a rate programmed to match exactly the silicon removed by web growth.

NHM-SMAP: spatially and temporally high-resolution nonhydrostatic atmospheric model coupled with detailed snow process model for Greenland Ice Sheet

NASA Astrophysics Data System (ADS)

Niwano, Masashi; Aoki, Teruo; Hashimoto, Akihiro; Matoba, Sumito; Yamaguchi, Satoru; Tanikawa, Tomonori; Fujita, Koji; Tsushima, Akane; Iizuka, Yoshinori; Shimada, Rigen; Hori, Masahiro

2018-02-01

To improve surface mass balance (SMB) estimates for the Greenland Ice Sheet (GrIS), we developed a 5 km resolution regional climate model combining the Japan Meteorological Agency Non-Hydrostatic atmospheric Model and the Snow Metamorphism and Albedo Process model (NHM-SMAP) with an output interval of 1 h, forced by the Japanese 55-year reanalysis (JRA-55). We used in situ data to evaluate NHM-SMAP in the GrIS during the 2011-2014 mass balance years. We investigated two options for the lower boundary conditions of the atmosphere: an offline configuration using snow, firn, and ice albedo, surface temperature data from JRA-55, and an online configuration using values from SMAP. The online configuration improved model performance in simulating 2 m air temperature, suggesting that the surface analysis provided by JRA-55 is inadequate for the GrIS and that SMAP results can better simulate physical conditions of snow/firn/ice. It also reproduced the measured features of the GrIS climate, diurnal variations, and even a strong mesoscale wind event. In particular, it successfully reproduced the temporal evolution of the GrIS surface melt area extent as well as the record melt event around 12 July 2012, at which time the simulated melt area extent reached 92.4 %. Sensitivity tests showed that the choice of calculation schemes for vertical water movement in snow and firn has an effect as great as 200 Gt year-1 in the GrIS-wide accumulated SMB estimates; a scheme based on the Richards equation provided the best performance.

Containerless Processing in Reduced Gravity Using the TEMPUS Facility during MSL-1 and MSL-1R

NASA Technical Reports Server (NTRS)

Rogers, Jan R.

1998-01-01

Containerless processing provides a high purity environment for the study of high-temperature, very reactive materials. It is an important method which provides access to the metastable state of an undercooled melt. In the absence of container walls, the nucleation rate is greatly reduced and undercooling up to (Tm-Tn)/Tm approx. equal to 0.2 can be obtained, where Tm and Tn are the melting and nucleation temperatures, respectively. Electromagnetic levitation represents a method particularly well-suited for the study of metallic melts. The TEMPUS (Tiegelfreies ElektroMagnetisches Prozessieren Unter Schwerelosgkeit) facility is a research instrument designed to perform electromagnetic levitation studies in reduced gravity. TEMPUS is a joint undertaking between DARA, the German Space Agency, and the Microgravity Science and Applications Division of NASA. The George C. Marshall Space Flight Center provides the leadership for scientific and management efforts which support the four US PI teams which performed experiments in the TEMPUS facility. The facility is sensitive to accelerations in the 1-10 Hz range. This became evident during the MSL-1 mission. Analysis of accelerometer and video data indicated that loss of sample control occurred during crew exercise periods which created disturbances in this frequency range. Prior to the MSL-1R flight the TEMPUS team, the accelerometer support groups and the mission operations team developed a strategy to provide for the operation of the facility without such disturbances. The successful implementation of this plan led to the highly successful operation of this facility during MSL-1R.

Preparation and evaluation of enteric coated tablets of hot melt extruded lansoprazole

PubMed Central

Alsulays, Bader B.; Kulkarni, Vijay; Alshehri, Sultan M.; Almutairy, Bjad K.; Ashour, Eman A.; Morott, Joseph T.; Alshetaili, Abdullah S.; Park, Jun-Bom; Tiwari, Roshan V.; Repka, Michael A.

2017-01-01

The objective of this work was to use hot-melt extrusion (HME) technology to improve the physiochemical properties of lansoprazole (LNS) to prepare stable enteric coated LNS tablets. For the extrusion process, we chose Kollidon® 12 PF (K12) polymeric matrix. Lutrol® F 68 was selected as the plasticizer and magnesium oxide (MgO) as the alkalizer. With or without the alkalizer, LNS at 10% drug load was extruded with K12 and F68. LNS changed to the amorphous phase and showed better release compared to that of the pure crystalline drug. Inclusion of MgO improved LNS extrudability and release and resulted in over 80% drug release in the buffer stage. Hot-melt extruded LNS was physically and chemically stable after 12 months of storage. Both formulations were studied for compatibility with Eudragit® L 100-55. The optimized formulation was compressed into a tablet followed by coating process utilizing a pan coater using L 100-55 as an enteric coating polymer. In a two-step dissolution study, the release profile of the enteric coated LNS tablets in the acidic stage was less than 10% of the LNS, while that in the buffer stage was more than 80%. Drug content analysis revealed the LNS content to be 97%, indicating the chemical stability of the enteric coated tablet after storage for 6 months. HME, which has not been previously used for LNS, is a valuable technique to reduce processing time in the manufacture of enteric coated formulations of an acid-sensitive active pharmaceutical ingredient as compared to the existing methods. PMID:27486807

Peptide nucleic acid probe-based fluorescence melting curve analysis for rapid screening of common JAK2, MPL, and CALR mutations.

PubMed

Park, Joonhong; Song, Minsik; Jang, Woori; Chae, Hyojin; Lee, Gun Dong; Kim, KyungTak; Park, Heekyung; Kim, Myungshin; Kim, Yonggoo

2017-02-01

We developed and evaluated the feasibility of peptide nucleic acid (PNA)-based fluorescence melting curve analysis (FMCA) to detect common mutations in myeloproliferative neoplasms (MPNs). We have set up two separate reactions of PNA-based FMCA: JAK2 V617F &CALR p.Leu367fs*46 (set A) and MPL W515L/K &CALR p.Lys385fs*47 (set B). Clinical usefulness was validated with allele-specific real-time PCR, fragment analysis, Sanger sequencing in 57 BCR-ABL1-negative MPNs. The limit of detection (LOD) of PNA-based FMCA was approximately 10% for each mutation and interference reactions using mixtures of different mutations were not observed. Non-specific amplification was not observed in normal control. PNA-based FMCA was able to detect all JAK2 V617F (n=20), CALR p.Leu367fs*46 (n=10) and p.Lys385fs*47 (n=8). Three of six MPL mutations were detected except three samples with low mutant concentration in out of LOD. JAK2 exon 12 mutations (n=7) were negative without influencing V617F results. Among six variant CALR exon 9 mutations, two were detected by this method owing to invading of probe binding site. PNA-based FMCA for detecting common JAK2, MPL, and CALR mutations is a rapid, simple, and sensitive technique in BCR-ABL1-negative MPNs with >10% mutant allele at the time of initial diagnosis. Copyright © 2016 Elsevier B.V. All rights reserved.

Spaceborne estimated long-term trends (1980s - 2013) of albedo and melting season length over the Greenland ice sheet and linkages to climate drivers

NASA Astrophysics Data System (ADS)

Tedesco, M.; Stroeve, J. C.

2014-12-01

The length of the melting season and surface albedo modulate the amount of meltwater produced over the Greenland ice sheet. The two quantities are intimately connected through a suite of non-linear processes: for example, early melting can reduce the surface albedo (through constructive grain size metamorphism), hence affecting the surface energy balance and further increasing melting. Over the past years, several studies have highlighted increased melting concurring, with a decrease of mean surface albedo over Greenland. However, few studies have examined the duration of the melting season, its implication for surface processes and linkages to climate drivers. Moreover, the majority (if not all) of the studies assessing albedo trends from spaceborne data over Greenland have focused on the last decade or so (2000 - 2013) because they use data collected over the same period by the Moderate Resolution Imaging Spectroradiometer (MODIS). Here, we evaluate and synthesize long-term trends in the length of the melting season (1979 - 2013) derived from spaceborne microwave observations together with surface albedo trends for the period 1982 - 2013 using data from the Advanced Very High Resolution Radiometer (AVHRR). To our knowledge, this is the first time that trends in Greenland albedo and melt season length are discussed for the periods considered in this study. Our results point to a lengthening of the melting season as a consequence of earlier melt onset and later refreeze and to a decrease of mean albedo (1982 - 2013) over the Greenland ice sheet, with trends being spatially variable. To account for this spatial variability, the results of an analysis at regional scales over 12 different regions (defined by elevation and drainage systems) are also reported. The robustness of the results is evaluated by means of a comparative analysis of the results obtained from both AVHRR and MODIS when overlapping data are available (2000 - 2013). Lastly, because large-scale circulation patterns and climate drivers can impact the amount of meltwater produced over Greenland (hence impacting albedo), we discuss the observed trends in the context of North Atlantic Oscillation (NAO) and Greenland Blocking Index (GBI) using a combination of regional climate model outputs and re-analysis data.

Processing of ash and slag waste of heating plants by arc plasma to produce construction materials and nanomodifiers

NASA Astrophysics Data System (ADS)

Buyantuev, S. L.; Urkhanova, L. A.; Kondratenko, A. S.; Shishulkin, S. Yu; Lkhasaranov, S. A.; Khmelev, A. B.

2017-01-01

The resultsare presented of plasma processing slag and ash waste from coal combustion in heating plants. Melting mechanism of ashand slagraw material is considered by an electromagnetic technological reactor. The analysis was conducted of temperature and phase transformations of raw material when it is heated up to the melting point, and also determination of specific energy consumption by using a generalized model of the thermodynamic analysis of TERRA. The study of materials melting temperature conditions and plum of melt was carried with high-temperature thermal imaging method, followed by mapping and 3D-modeling of the temperature fields. The investigations to establish the principal possibilities of using slag waste of local coal as raw material for the production of mineral (ash and slag) fibers found that by chemical composition there are oxides in the following ranges: 45-65% SiO2; 10-25% Al2O3; 10-45% CaO; 5-10% MgO; other minerals (less than 5%). Thus, these technological wastes are principally suitable for melts to produce mineral wool by the plasma method. An analysis of the results shows the melting point of ash and slag waste - 1800-2000 °C. In this case the specific energy consumption of these processes keeps within the limits of 1.1-1.3 kW*h/kg. For comparison it should be noted that the unit cost of electricity in the known high-melting industrial installations 5-6 kW*h/kg. Upon melting ash and slag waste, which contains up to 2-5% of unburned carbon, carbon nanomaterials were discovered.in the form of ultrafine soot accumulating as a plaque on the water-cooled surfaces in the gas cleaning chamber. The process of formation of soot consists in sublimation-desublimation of part of carbon which is in ash and slag, and graphite electrode. Thus, upon melting of ash and slag in the electromagnetic reactor it is possible to obtain melt, and in the subsequent mineral high quality fiber, which satisfies the requirements of normative documents, and simultaneously to receive a condensed product in the form of carbon sublimated nanoparticles, which can be found further use in construction materials, in particular in high-strength concrete and other materials.

Mapping Snow Grain Size over Greenland from MODIS

NASA Technical Reports Server (NTRS)

Lyapustin, Alexei; Tedesco, Marco; Wang, Yujie; Kokhanovsky, Alexander

2008-01-01

This paper presents a new automatic algorithm to derive optical snow grain size (SGS) at 1 km resolution using Moderate Resolution Imaging Spectroradiometer (MODIS) measurements. Differently from previous approaches, snow grains are not assumed to be spherical but a fractal approach is used to account for their irregular shape. The retrieval is conceptually based on an analytical asymptotic radiative transfer model which predicts spectral bidirectional snow reflectance as a function of the grain size and ice absorption. The analytical form of solution leads to an explicit and fast retrieval algorithm. The time series analysis of derived SGS shows a good sensitivity to snow metamorphism, including melting and snow precipitation events. Preprocessing is performed by a Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm, which includes gridding MODIS data to 1 km resolution, water vapor retrieval, cloud masking and an atmospheric correction. MAIAC cloud mask (CM) is a new algorithm based on a time series of gridded MODIS measurements and an image-based rather than pixel-based processing. Extensive processing of MODIS TERRA data over Greenland shows a robust performance of CM algorithm in discrimination of clouds over bright snow and ice. As part of the validation analysis, SGS derived from MODIS over selected sites in 2004 was compared to the microwave brightness temperature measurements of SSM\\I radiometer, which is sensitive to the amount of liquid water in the snowpack. The comparison showed a good qualitative agreement, with both datasets detecting two main periods of snowmelt. Additionally, MODIS SGS was compared with predictions of the snow model CROCUS driven by measurements of the automatic whether stations of the Greenland Climate Network. We found that CROCUS grain size is on average a factor of two larger than MODIS-derived SGS. Overall, the agreement between CROCUS and MODIS results was satisfactory, in particular before and during the first melting period in mid-June. Following detailed time series analysis of SGS for four permanent sites, the paper presents SGS maps over the Greenland ice sheet for the March-September period of 2004.

Estimating the volume of supra-glacial melt lakes across Greenland: A study of uncertainties derived from multi-platform water-reflectance models

NASA Astrophysics Data System (ADS)

Cordero-Llana, L.; Selmes, N.; Murray, T.; Scharrer, K.; Booth, A. D.

2012-12-01

Large volumes of water are necessary to propagate cracks to the glacial bed via hydrofractures. Hydrological models have shown that lakes above a critical volume can supply the necessary water for this process, so the ability to measure water depth in lakes remotely is important to study these processes. Previously, water depth has been derived from the optical properties of water using data from high resolution optical satellite images, as such ASTER, (Advanced Spaceborne Thermal Emission and Reflection Radiometer), IKONOS and LANDSAT. These studies used water-reflectance models based on the Bouguer-Lambert-Beer law and lack any estimation of model uncertainties. We propose an optimized model based on Sneed and Hamilton's (2007) approach to estimate water depths in supraglacial lakes and undertake a robust analysis of the errors for the first time. We used atmospherically-corrected data from ASTER and MODIS data as an input to the water-reflectance model. Three physical parameters are needed: namely bed albedo, water attenuation coefficient and reflectance of optically-deep water. These parameters were derived for each wavelength using standard calibrations. As a reference dataset, we obtained lake geometries using ICESat measurements over empty lakes. Differences between modeled and reference depths are used in a minimization model to obtain parameters for the water-reflectance model, yielding optimized lake depth estimates. Our key contribution is the development of a Monte Carlo simulation to run the water-reflectance model, which allows us to quantify the uncertainties in water depth and hence water volume. This robust statistical analysis provides better understanding of the sensitivity of the water-reflectance model to the choice of input parameters, which should contribute to the understanding of the influence of surface-derived melt-water on ice sheet dynamics. Sneed, W.A. and Hamilton, G.S., 2007: Evolution of melt pond volume on the surface of the Greenland Ice Sheet. Geophysical Research Letters, 34, 1-4.

Modelling present-day basal melt rates for Antarctic ice shelves using a parametrization of buoyant meltwater plumes

NASA Astrophysics Data System (ADS)

Lazeroms, Werner M. J.; Jenkins, Adrian; Hilmar Gudmundsson, G.; van de Wal, Roderik S. W.

2018-01-01

Basal melting below ice shelves is a major factor in mass loss from the Antarctic Ice Sheet, which can contribute significantly to possible future sea-level rise. Therefore, it is important to have an adequate description of the basal melt rates for use in ice-dynamical models. Most current ice models use rather simple parametrizations based on the local balance of heat between ice and ocean. In this work, however, we use a recently derived parametrization of the melt rates based on a buoyant meltwater plume travelling upward beneath an ice shelf. This plume parametrization combines a non-linear ocean temperature sensitivity with an inherent geometry dependence, which is mainly described by the grounding-line depth and the local slope of the ice-shelf base. For the first time, this type of parametrization is evaluated on a two-dimensional grid covering the entire Antarctic continent. In order to apply the essentially one-dimensional parametrization to realistic ice-shelf geometries, we present an algorithm that determines effective values for the grounding-line depth and basal slope in any point beneath an ice shelf. Furthermore, since detailed knowledge of temperatures and circulation patterns in the ice-shelf cavities is sparse or absent, we construct an effective ocean temperature field from observational data with the purpose of matching (area-averaged) melt rates from the model with observed present-day melt rates. Our results qualitatively replicate large-scale observed features in basal melt rates around Antarctica, not only in terms of average values, but also in terms of the spatial pattern, with high melt rates typically occurring near the grounding line. The plume parametrization and the effective temperature field presented here are therefore promising tools for future simulations of the Antarctic Ice Sheet requiring a more realistic oceanic forcing.

Temperature of Earth's core constrained from melting of Fe and Fe0.9Ni0.1 at high pressures

NASA Astrophysics Data System (ADS)

Zhang, Dongzhou; Jackson, Jennifer M.; Zhao, Jiyong; Sturhahn, Wolfgang; Alp, E. Ercan; Hu, Michael Y.; Toellner, Thomas S.; Murphy, Caitlin A.; Prakapenka, Vitali B.

2016-08-01

The melting points of fcc- and hcp-structured Fe0.9Ni0.1 and Fe are measured up to 125 GPa using laser heated diamond anvil cells, synchrotron Mössbauer spectroscopy, and a recently developed fast temperature readout spectrometer. The onset of melting is detected by a characteristic drop in the time-integrated synchrotron Mössbauer signal which is sensitive to atomic motion. The thermal pressure experienced by the samples is constrained by X-ray diffraction measurements under high pressures and temperatures. The obtained best-fit melting curves of fcc-structured Fe and Fe0.9Ni0.1 fall within the wide region bounded by previous studies. We are able to derive the γ-ɛ-l triple point of Fe and the quasi triple point of Fe0.9Ni0.1 to be 110 ± 5GPa, 3345 ± 120K and 116 ± 5GPa, 3260 ± 120K, respectively. The measured melting temperatures of Fe at similar pressure are slightly higher than those of Fe0.9Ni0.1 while their one sigma uncertainties overlap. Using previously measured phonon density of states of hcp-Fe, we calculate melting curves of hcp-structured Fe and Fe0.9Ni0.1 using our (quasi) triple points as anchors. The extrapolated Fe0.9Ni0.1 melting curve provides an estimate for the upper bound of Earth's inner core-outer core boundary temperature of 5500 ± 200K. The temperature within the liquid outer core is then approximated with an adiabatic model, which constrains the upper bound of the temperature at the core side of the core-mantle boundary to be 4000 ± 200K. We discuss a potential melting point depression caused by light elements and the implications of the presented core-mantle boundary temperature bounds on phase relations in the lowermost part of the mantle.

Temperature of Earth's core constrained from melting of Fe and Fe 0.9Ni 0.1 at high pressures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Dongzhou; Jackson, Jennifer M.; Zhao, Jiyong

The melting points of fcc- and hcp-structured Fe 0.9Ni 0.1 and Fe are measured up to 125 GPa using laser heated diamond anvil cells, synchrotron Mossbauer spectroscopy, and a recently developed fast temperature readout spectrometer. The onset of melting is detected by a characteristic drop in the time integrated synchrotron Mfissbauer signal which is sensitive to atomic motion. The thermal pressure experienced by the samples is constrained by X-ray diffraction measurements under high pressures and temperatures. The obtained best-fit melting curves of fcc-structured Fe and Fe 0.9Ni 0.1 fall within the wide region bounded by previous studies. We are ablemore » to derive the gamma-is an element of-1 triple point of Fe and the quasi triple point of Fe0.9Ni0.1 to be 110 ± 5 GPa, 3345 ± 120 K and 116 ± 5 GPa, 3260 ± 120 K, respectively. The measured melting temperatures of Fe at similar pressure are slightly higher than those of Fe 0.9Ni 0.1 while their one sigma uncertainties overlap. Using previously measured phonon density of states of hcp-Fe, we calculate melting curves of hcp-structured Fe and Fe 0.9Ni 0.1 using our (quasi) triple points as anchors. The extrapolated Fe 0.9Ni 0.1 melting curve provides an estimate for the upper bound of Earth's inner core-outer core boundary temperature of 5500 ± 200 K. The temperature within the liquid outer core is then approximated with an adiabatic model, which constrains the upper bound of the temperature at the core side of the core -mantle boundary to be 4000 ± 200 K. We discuss a potential melting point depression caused by light elements and the implications of the presented core -mantle boundary temperature bounds on phase relations in the lowermost part of the mantle.« less

Diffusion coefficients of Mg isotopes in MgSiO3 and Mg2SiO4 melts calculated by first-principles molecular dynamics simulations

NASA Astrophysics Data System (ADS)

Liu, Xiaohui; Qi, Yuhan; Zheng, Daye; Zhou, Chen; He, Lixin; Huang, Fang

2018-02-01

The mass dependence of diffusion coefficient (D) can be described in the form of Di/Dj = (mj/mi)β, where m denotes masses of isotope i and j, and β is an empirical parameter as used to quantify the diffusive transport of isotopes. Recent advances in computation techniques allow theoretically calculation of β values. Here, we apply first-principles Born-Oppenheimer molecular dynamics (MD) and pseudo-isotope method (taking mj/mi = 1/24, 6/24, 48/24, 120/24) to estimate β for MgSiO3 and Mg2SiO4 melts. Our calculation shows that β values for Mg calculated with 24Mg and different pseudo Mg isotopes are identical, indicating the reliability of the pseudo-isotope method. For MgSiO3 melt, β is 0.272 ± 0.005 at 4000 K and 0 GPa, higher than the value calculated using classical MD simulations (0.135). For Mg2SiO4 melt, β is 0.184 ± 0.006 at 2300 K, 0.245 ± 0.007 at 3000 K, and 0.257 ± 0.012 at 4000 K. Notably, β values of MgSiO3 and Mg2SiO4 melts are significantly higher than the value in basalt-rhyolite melts determined by chemical diffusion experiments (0.05). Our results suggest that β values are not sensitive to the temperature if it is well above the liquidus, but can be significantly smaller when the temperature is close to the liquidus. The small difference of β between silicate liquids with simple compositions of MgSiO3 and Mg2SiO4 suggests that the β value may depend on the chemical composition of the melts. This study shows that first-principles MD provide a promising tool to estimate β of silicate melts.

The Gao-Guenie impact melt breccia—Sampling a rapidly cooled impact melt dike on an H chondrite asteroid?

NASA Astrophysics Data System (ADS)

Schmieder, Martin; Kring, David A.; Swindle, Timothy D.; Bond, Jade C.; Moore, Carleton B.

2016-06-01

The Gao-Guenie H5 chondrite that fell on Burkina Faso (March 1960) has portions that were impact-melted on an H chondrite asteroid at ~300 Ma and, through later impact events in space, sent into an Earth-crossing orbit. This article presents a petrographic and electron microprobe analysis of a representative sample of the Gao-Guenie impact melt breccia consisting of a chondritic clast domain, quenched melt in contact with chondritic clasts, and an igneous-textured impact melt domain. Olivine is predominantly Fo80-82. The clast domain contains low-Ca pyroxene. Impact melt-grown pyroxene is commonly zoned from low-Ca pyroxene in cores to pigeonite and augite in rims. Metal-troilite orbs in the impact melt domain measure up to ~2 mm across. The cores of metal orbs in the impact melt domain contain ~7.9 wt% of Ni and are typically surrounded by taenite and Ni-rich troilite. The metallography of metal-troilite droplets suggest a stage I cooling rate of order 10 °C s-1 for the superheated impact melt. The subsolidus stage II cooling rate for the impact melt breccia could not be determined directly, but was presumably fast. An analogy between the Ni rim gradients in metal of the Gao-Guenie impact melt breccia and the impact-melted H6 chondrite Orvinio suggests similar cooling rates, probably on the order of ~5000-40,000 °C yr-1. A simple model of conductive heat transfer shows that the Gao-Guenie impact melt breccia may have formed in a melt injection dike ~0.5-5 m in width, generated during a sizeable impact event on the H chondrite parent asteroid.

Melting processes of oligomeric α and β isotactic polypropylene crystals at ultrafast heating rates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ji, Xiaojing; He, Xuehao, E-mail: xhhe@tju.edu.cn, E-mail: scjiang@tju.edu.cn; Jiang, Shichun, E-mail: xhhe@tju.edu.cn, E-mail: scjiang@tju.edu.cn

The melting behaviors of α (stable) and β (metastable) isotactic polypropylene (iPP) crystals at ultrafast heating rates are simulated with atomistic molecular dynamics method. Quantitative information about the melting processes of α- and β-iPP crystals at atomistic level is achieved. The result shows that the melting process starts from the interfaces of lamellar crystal through random dislocation of iPP chains along the perpendicular direction of lamellar crystal structure. In the melting process, the lamellar crystal gradually expands but the corresponding thickness decreases. The analysis shows that the system expansion lags behind the crystallinity decreasing and the lagging extents for α-more » and β-iPP are significantly different. The apparent melting points of α- and β-iPP crystals rise with the increase of the heating rate and lamellar crystal thickness. The apparent melting point of α-iPP crystal is always higher than that of β-iPP at differently heating rates. Applying the Gibbs-Thomson rule and the scaling property of the melting kinetics, the equilibrium melting points of perfect α- and β-iPP crystals are finally predicted and it shows a good agreement with experimental result.« less

Analysis of close-contact melting with inner wall temperature variation in a horizontal cylindrical capsule

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saitoh, T.S.; Hoshi, Akira

1997-12-31

Melting and solidification of a phase change material (PCM) in a capsule is of practical importance in latent heat thermal energy storage (LHTES) systems which are considered to be very promising to reduce a peak demand of electricity in the summer season. Two melting modes are involved in melting in capsules. One is close-contact melting between the solid bulk and the capsule wall, and another is natural convection melting in the liquid region. In recent years, close-contact melting processes for a single enclosure have been solved using several numerical methods (e.g., Saitoh and Kato (1994)). However, there is no theoreticalmore » solution considering the inner wall temperature variation within cylindrical or spherical capsules. In this report close-contact melting heat transfer characteristics including melt flow in the liquid film under inner wall temperature distribution were analyzed and simple approximate equations are presented, which facilitates designing of the practical capsule bed LHTES systems. The effects of Stefan number and variable temperature profile etc. were clarified in detail. And the melting velocity of the solid bulk under various conditions was also studied theoretically. In addition, the effects of variable inner wall temperature on molten mass fraction were investigated.« less

Unlabeled Oligonucleotides as Internal Temperature Controls for Genotyping by Amplicon Melting

PubMed Central

Seipp, Michael T.; Durtschi, Jacob D.; Liew, Michael A.; Williams, Jamie; Damjanovich, Kristy; Pont-Kingdon, Genevieve; Lyon, Elaine; Voelkerding, Karl V.; Wittwer, Carl T.

2007-01-01

Amplicon melting is a closed-tube method for genotyping that does not require probes, real-time analysis, or allele-specific polymerase chain reaction. However, correct differentiation of homozygous mutant and wild-type samples by melting temperature (Tm) requires high-resolution melting and closely controlled reaction conditions. When three different DNA extraction methods were used to isolate DNA from whole blood, amplicon Tm differences of 0.03 to 0.39°C attributable to the extractions were observed. To correct for solution chemistry differences between samples, complementary unlabeled oligonucleotides were included as internal temperature controls to shift and scale the temperature axis of derivative melting plots. This adjustment was applied to a duplex amplicon melting assay for the methylenetetrahydrofolate reductase variants 1298A>C and 677C>T. High- and low-temperature controls bracketing the amplicon melting region decreased the Tm SD within homozygous genotypes by 47 to 82%. The amplicon melting assay was 100% concordant to an adjacent hybridization probe (HybProbe) melting assay when temperature controls were included, whereas a 3% error rate was observed without temperature correction. In conclusion, internal temperature controls increase the accuracy of genotyping by high-resolution amplicon melting and should also improve results on lower resolution instruments. PMID:17591926

Climate change and forest fires synergistically drive widespread melt events of the Greenland Ice Sheet.

PubMed

Keegan, Kaitlin M; Albert, Mary R; McConnell, Joseph R; Baker, Ian

2014-06-03

In July 2012, over 97% of the Greenland Ice Sheet experienced surface melt, the first widespread melt during the era of satellite remote sensing. Analysis of six Greenland shallow firn cores from the dry snow region confirms that the most recent prior widespread melt occurred in 1889. A firn core from the center of the ice sheet demonstrated that exceptionally warm temperatures combined with black carbon sediments from Northern Hemisphere forest fires reduced albedo below a critical threshold in the dry snow region, and caused the melting events in both 1889 and 2012. We use these data to project the frequency of widespread melt into the year 2100. Since Arctic temperatures and the frequency of forest fires are both expected to rise with climate change, our results suggest that widespread melt events on the Greenland Ice Sheet may begin to occur almost annually by the end of century. These events are likely to alter the surface mass balance of the ice sheet, leaving the surface susceptible to further melting.

Partial melting and melt percolation in the mantle: The message from Fe isotopes

NASA Astrophysics Data System (ADS)

Weyer, Stefan; Ionov, Dmitri A.

2007-07-01

High precision Fe isotope measurements have been performed on various mantle peridotites (fertile lherzolites, harzburgites, metasomatised Fe-enriched peridotites) and volcanic rocks (mainly oceanic basalts) from different localities and tectonic settings. The peridotites yield an average δ 56Fe = 0.01‰ and are significantly lighter than the basalts (average δ 56Fe = 0.11‰). Furthermore, the peridotites display a negative correlation of δ 56Fe with Mg# indicating a link between δ 56Fe and degrees of melt extraction. Taken together, these findings imply that Fe isotopes fractionate during partial melting, with heavy isotopes preferentially entering the melt. The slope of depletion trends (δ 56Fe versus Mg#) of the peridotites was used to model Fe isotope fractionation during partial melting, resulting in αmantle-melt ≈ 1.0001-1.0003 or ln αmantle-melt ≈ 0.1-0.3‰. In contrast to most other peridotites investigated in this study, spinel lherzolites and harzburgites from three localities (Horoman, Kamchatka and Lherz) are virtually unaffected by metasomatism. These three sites display a particularly good correlation and define an isotope fractionation factor of ln αmantle-melt ≈ 0.3‰. This modelled value implies Fe isotope fractionation between residual mantle and mantle-derived melts corresponding to Δ56Fe mantle-basalt ≈ 0.2-0.3‰, i.e. significantly higher than the observed difference between averages for all the peridotites and the basalts in this study (corresponding to Δ56Fe mantle-basalt ≈ 0.1‰). Either disequilibrium melting increased the modelled αmantle-melt for these particular sites or the difference between average peridotite and basalt may be reduced by partial re-equilibration between the isotopically heavy basalts and the isotopically light depleted lithospheric mantle during melt ascent. The slope of the weaker δ 56Fe-Mg# trend defined by the combined set of all mantle peridotites from this study is more consistent with the generally observed difference between peridotites and basalts; this slope was used here to estimate the Fe isotope composition of the fertile upper mantle (at Mg# = 0.894, δ 56Fe ≈ 0.02 ± 0.03‰). Besides partial melting, the Fe isotope composition of mantle peridotites can also be significantly modified by metasomatic events, e.g. melt percolation. At two localities (Tok, Siberia and Tariat, Mongolia) δ 56Fe correlates with iron contents of the peridotites, which was increased from about 8% to up to 14.5% FeO by post-melting melt percolation. This process produced a range of Fe isotope compositions in the percolation columns, from extremely light (δ 56Fe = - 0.42‰) to heavy (δ 56Fe = + 0.17‰). We propose reaction with isotopically heavy melts and diffusion (enrichment of light Fe isotopes) as the most likely processes that produced the large isotope variations at these sites. Thus, Fe isotopes might be used as a sensitive tracer to identify such metasomatic processes in the mantle.

STR melting curve analysis as a genetic screening tool for crime scene samples.

PubMed

Nguyen, Quang; McKinney, Jason; Johnson, Donald J; Roberts, Katherine A; Hardy, Winters R

2012-07-01

In this proof-of-concept study, high-resolution melt curve (HRMC) analysis was investigated as a postquantification screening tool to discriminate human CSF1PO and THO1 genotypes amplified with mini-STR primers in the presence of SYBR Green or LCGreen Plus dyes. A total of 12 CSF1PO and 11 HUMTHO1 genotypes were analyzed on the LightScanner HR96 and LS-32 systems and were correctly differentiated based upon their respective melt profiles. Short STR amplicon melt curves were affected by repeat number, and single-source and mixed DNA samples were additionally differentiated by the formation of heteroduplexes. Melting curves were shown to be unique and reproducible from DNA quantities ranging from 20 to 0.4 ng and distinguished identical from nonidentical genotypes from DNA derived from different biological fluids and compromised samples. Thus, a method is described which can assess both the quantity and the possible probative value of samples without full genotyping. 2012 American Academy of Forensic Sciences. Published 2012. This article is a U.S. Government work and is in the public domain in the U.S.A.

Characterization of crystal forms of β-estradiol thermal analysis, Raman microscopy, X-ray analysis and solid-state NMR

NASA Astrophysics Data System (ADS)

Variankaval, N. E.; Jacob, K. I.; Dinh, S. M.

2000-08-01

The structure and select crystalline properties of a common drug (estradiol) used in a transdermal drug delivery system are investigated. Four different crystal forms of estradiol (EA, EC, ED and EM) were prepared in the laboratory and characterized by thermal analysis, optical microscopy, Raman microspectroscopy, and solid-state NMR. Variable temperature X-ray studies were carried out on form A (EA) to determine whether the crystal structure changed as a function of temperature. These four forms exhibited different thermal behavior. EA and EC had similar melting points. This study clearly shows that water cannot be released from the crystal lattice of EA unless melting is achieved, and exposing EA to temperatures below the melting point only results in a partial release of hydrogen bonded water. EC was prepared by melting EA and subsequently cooling it to room temperature. Form EC was anhydrous, as it did not exhibit water loss, as opposed to EA, which had about 3.5% water in its crystal structure. ED was very difficult to prepare and manifested itself only as a mixture with EC. Its melting point was about 10°C lower than that of EC. It is thought to be an unstable form due to its simultaneous occurrence with EC and the inability to isolate it. EM is a solvate of methanol, not a polymorph. Its melting point was similar to EA and EC. From thermogravimetry/differential thermal analysis and differential scanning calorimetry data, it was apparent that estradiol formed a hemisolvate with methanol. All four forms had different morphologies. Raman microscopy was carried out on the different crystal forms. The spectra of EC and ED were almost identical. Thermal analysis revealed that this is due to the highly unstable nature of ED and its tendency to either convert spontaneously to EC or occur in mixtures with it.

Solidification microstructures in single-crystal stainless steel melt pools

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sipf, J.B.; Boatner, L.A.; David, S.A.

1994-03-01

Development of microstructure of stationary melt pools of oriented stainless steel single crystals (70%Fe-15%Ni-15%Cr was analyzed. Stationary melt pools were formed by electron-beam and gas-tungsten-arc heating on (001), (011), and (111) oriented planes of the austenitic, fcc-alloy crystals. Characterization and analysis of resulting microstructure was carried out for each crystallographic plane and welding method. Results showed that crystallography which favors ``easy growth`` along the <100> family of directions is a controlling factor in the microstructural formation along with the melt-pool shape. The microstructure was found to depend on the melting method, since each method forms a unique melt-pool shape. Thesemore » results are used in making a three-dimensional reconstruction of the microstructure for each plane and melting method employed. This investigation also suggests avenues for future research into the microstructural properties of electron-beam welds as well as providing an experimental basis for mathematical models for the prediction of solidification microstructures.« less

The melting and solidification of nanowires

NASA Astrophysics Data System (ADS)

Florio, B. J.; Myers, T. G.

2016-06-01

A mathematical model is developed to describe the melting of nanowires. The first section of the paper deals with a standard theoretical situation, where the wire melts due to a fixed boundary temperature. This analysis allows us to compare with existing results for the phase change of nanospheres. The equivalent solidification problem is also examined. This shows that solidification is a faster process than melting; this is because the energy transfer occurs primarily through the solid rather than the liquid which is a poorer conductor of heat. This effect competes with the energy required to create new solid surface which acts to slow down the process, but overall conduction dominates. In the second section, we consider a more physically realistic boundary condition, where the phase change occurs due to a heat flux from surrounding material. This removes the singularity in initial melt velocity predicted in previous models of nanoparticle melting. It is shown that even with the highest possible flux the melting time is significantly slower than with a fixed boundary temperature condition.

EFFECTS OF LASER RADIATION ON MATTER. LASER PLASMA: Laser—ultrasonic formation of melts of high-speed tool steels

NASA Astrophysics Data System (ADS)

Gureev, D. M.

1994-09-01

A study was made of the influence of ultrasonic vibrations on the processes of heat and mass transfer, and of structure formation during ultrafast crystallisation of laser melts of T1 high-speed tool steel. Acoustic flows which appeared in laser melts effectively smoothed out the temperature inhomogeneities and flattened the relief of the molten surface even when the laser radiation acted for just ~1 ms. The transformation of the mechanical energy of ultrasonic vibrations into heat increased the depth of the laser melt baths and suppressed crack formation. The observed changes in the structural and phase composition appeared as a change in the microhardness of the solidified laser melts. The geometry of coupling of ultrasound into a laser melt influenced the changes in the microhardness, suggesting a need for a more detailed analysis of the structure formation processes in the course of ultrafast crystallisation of laser melts in an ultrasonic field.

Gel electrophoresis of partially denatured DNA. Retardation effect: its analysis and application.

PubMed Central

Lyamichev, V I; Panyutin, I G; Lyubchenko YuL

1982-01-01

The hypothesis about the role of partial denaturation in DNA retardation during its electrophoresis in denaturing gel /1,2/ was tested. We used partially melted DNA molecules in which the size of the melted regions and their location were known. They were obtained through glyoxal treatment of the melted regions by a procedure allowing the denatured state to be fixed at any point within the melting range. The approach and the availability of the melting maps of DNAs made it possible to investigate DNA molecules differing in length and in the size of the melted regions. The presence of a denatured region at the end of the molecule or inside of it was shown to decrease its electrophoretic mobility, the effect depending on the size of the melted region and on the DNA length. On the basis of the experimental results an explanation is proposed for the cause of retardation in the case of partially denatured DNA. Images PMID:7133999

Melting temperatures of MgO under high pressure by micro-texture analysis

PubMed Central

Kimura, T.; Ohfuji, H.; Nishi, M.; Irifune, T.

2017-01-01

Periclase (MgO) is the second most abundant mineral after bridgmanite in the Earth's lower mantle, and its melting behaviour under pressure is important to constrain rheological properties and melting behaviours of the lower mantle materials. Significant discrepancies exist between the melting temperatures of MgO determined by laser-heated diamond anvil cell (LHDAC) and those based on dynamic compressions and theoretical predictions. Here we show the melting temperatures in earlier LHDAC experiments are underestimated due to misjudgment of melting, based on micro-texture observations of the quenched samples. The high melting temperatures of MgO suggest that the subducted cold slabs should have higher viscosities than previously thought, suggesting that the inter-connecting textural feature of MgO would not play important roles for the slab stagnation in the lower mantle. The present results also predict that the ultra-deep magmas produced in the lower mantle are peridotitic, which are stabilized near the core–mantle boundary. PMID:28580945

Rapid Determination of Lymphogranuloma Venereum Serovars of Chlamydia trachomatis by Quantitative High-Resolution Melt Analysis (HRMA)

PubMed Central

Stevens, Matthew P.; Garland, Suzanne M.; Zaia, Angelo M.; Tabrizi, Sepehr N.

2012-01-01

A quantitative high-resolution melt analysis assay was developed to differentiate lymphogranuloma venereum-causing serovars of Chlamydia trachomatis (L1 to L3) from other C. trachomatis serovars (D to K). The detection limit of this assay is approximately 10 copies per reaction, comparable to the limits of other quantitative-PCR-based methods. PMID:22933594

Sensitivity Analysis of Repeat Track Estimation Techniques for Detection of Elevation Change in Polar Ice Sheets

NASA Astrophysics Data System (ADS)

Harpold, R. E.; Urban, T. J.; Schutz, B. E.

2008-12-01

Interest in elevation change detection in the polar regions has increased recently due to concern over the potential sea level rise from the melting of the polar ice caps. Repeat track analysis can be used to estimate elevation change rate by fitting elevation data to model parameters. Several aspects of this method have been tested to improve the recovery of the model parameters. Elevation data from ICESat over Antarctica and Greenland from 2003-2007 are used to test several grid sizes and types, such as grids based on latitude and longitude and grids centered on the ICESat reference groundtrack. Different sets of parameters are estimated, some of which include seasonal terms or alternate types of slopes (linear, quadratic, etc.). In addition, the effects of including crossovers and other solution constraints are evaluated. Simulated data are used to infer potential errors due to unmodeled parameters.

Analysis of the effect of symmetric/asymmetric CUSP magnetic fields on melt/crystal interface during Czochralski silicon growth

NASA Astrophysics Data System (ADS)

Daggolu, Parthiv; Ryu, Jae Woo; Galyukov, Alex; Kondratyev, Alexey

2016-10-01

With the use of 300 mm silicon wafers for industrial semiconductor device manufacturing, the Czochralski (Cz) crystal growth process has to be optimized to achieve higher quality and productivity. Numerical studies based on 2D global thermal models combined with 3D simulation of melt convection are widely used today to save time and money in the process development. Melt convection in large scale Cz Si growth is controlled by a CUSP or transversal magnetic field (MF) to suppress the melt turbulence. MF can be optimized to meet necessary characteristics of the growing crystal, in terms of point defects, as MF affects the melt/crystal interface geometry and allows adjustment of the pulling rate. Among the different knobs associated with the CUSP magnetic field, the nature of its configuration, going from symmetric to asymmetric, is also reported to be an important tool for the control of crystallization front. Using a 3D unsteady model of the CGSim software, we have studied these effects and compared with several experimental results. In addition, physical mechanisms behind these observations are explored through a detailed modeling analysis of the effect of an asymmetric CUSP MF on convection features governing the heat transport in the silicon melt.

Grain-size dynamics beneath mid-ocean ridges: Implications for permeability and melt extraction.

PubMed

Turner, Andrew J; Katz, Richard F; Behn, Mark D

2015-03-01

Grain size is an important control on mantle viscosity and permeability, but is difficult or impossible to measure in situ. We construct a two-dimensional, single phase model for the steady state mean grain size beneath a mid-ocean ridge. The mantle rheology is modeled as a composite of diffusion creep, dislocation creep, dislocation accommodated grain boundary sliding, and a plastic stress limiter. The mean grain size is calculated by the paleowattmeter relationship of Austin and Evans (2007). We investigate the sensitivity of our model to global variations in grain growth exponent, potential temperature, spreading-rate, and mantle hydration. We interpret the mean grain-size field in terms of its permeability to melt transport. The permeability structure due to mean grain size may be approximated as a high permeability region beneath a low permeability region. The transition between high and low permeability regions occurs across a boundary that is steeply inclined toward the ridge axis. We hypothesize that such a permeability structure generated from the variability of the mean grain size may focus melt toward the ridge axis, analogous to Sparks and Parmentier (1991)-type focusing. This focusing may, in turn, constrain the region where significant melt fractions are observed by seismic or magnetotelluric surveys. This interpretation of melt focusing via the grain-size permeability structure is consistent with MT observation of the asthenosphere beneath the East Pacific Rise. The grain-size field beneath MORs can vary over orders of magnitude The grain-size field affects the rheology and permeability of the asthenosphere The grain-size field may focus melt toward the ridge axis.

Century-scale simulations of the response of the West Antarctic Ice Sheet to a warming climate

DOE PAGES

Cornford, S. L.; Martin, D. F.; Payne, A. J.; ...

2015-03-23

We use the BISICLES adaptive mesh ice sheet model to carry out one, two, and three century simulations of the fast-flowing ice streams of the West Antarctic Ice Sheet. Each of the simulations begins with a geometry and velocity close to present day observations, and evolves according to variation in meteoric ice accumulation, ice shelf melting, and mesh resolution. Future changes in accumulation and melt rates range from no change, through anomalies computed by atmosphere and ocean models driven by the E1 and A1B emissions scenarios, to spatially uniform melt rates anomalies that remove most of the ice shelves overmore » a few centuries. We find that variation in the resulting ice dynamics is dominated by the choice of initial conditions, ice shelf melt rate and mesh resolution, although ice accumulation affects the net change in volume above flotation to a similar degree. Given sufficient melt rates, we compute grounding line retreat over hundreds of kilometers in every major ice stream, but the ocean models do not predict such melt rates outside of the Amundsen Sea Embayment until after 2100. Sensitivity to mesh resolution is spurious, and we find that sub-kilometer resolution is needed along most regions of the grounding line to avoid systematic under-estimates of the retreat rate, although resolution requirements are more stringent in some regions – for example the Amundsen Sea Embayment – than others – such as the Möller and Institute ice streams.« less

High resolution melting analysis to genotype the most common variants in the HFE gene.

PubMed

Marotta, Roberta V; Turri, Olivia; Morandi, Antonella; Murano, Manuela; d'Eril, Gianlodovico Melzi; Biondi, Maria Luisa

2011-09-01

High resolution melting (HRM) analysis of PCR amplicons was recently introduced as a closed-tube, rapid, and inexpensive method of genotyping. This study evaluated this system as an option for detecting the three most common mutations in the HFE gene (C282Y, H63D, S65C), accounting for the main form of hereditary haemochromatosis. Ninety samples, previously screened by direct sequencing, and 27 controls were used. The analysis were performed on the Rotor Gene Q, using the commercial HRM mix containing the Eva Green dye (Qiagen). Specific primers allowed the amplification of the regions of interest in the HFE gene. Following amplification, a HRM analysis was conducted to detect DNA variants. The thermal denaturation profiles of the samples were compared with those of the controls. One hundred percent of heterozygous and homozygous samples were readily identified. Heterozygotes were easily identified because heteroduplexes altered the shape of the melting curves, but significant differences were also present in the melting curves of the homozygous carries compared with those of the wild-type subjects. HRM analysis is an appealing technology for HFE gene screening. It is a robust technique that can be widely adopted in diagnostic laboratories to facilitate gene mutation screening.

Destabilization of yttria-stabilized zirconia induced by molten sodium vanadate-sodium sulfate melts

NASA Technical Reports Server (NTRS)

Nagelberg, A. S.; Hamilton, J. C.

1985-01-01

The extent of surface destabilization of ZrO2 - 8 wt percent Y2O3 ceramic disks was determined after exposure to molten salt mixtures of sodium sulfate containing up to 15 mole percent sodium metavanadate (NaVO3) at 1173 K. The ceramic surface was observed to transform from the cubic/tetragonal to monoclinic phase, concurrent with chemical changes in the molten salt layer in contact with the ceramic. Significant attack rates were observed in both pure sulfate and metavanadate sulfate melts. The rate of attack was found to be quite sensitive to the mole fraction of vanadate in the molten salt solution and the partial pressure of sulfur trioxide in equilibrium with the salt melt. The observed parabolic rate of attack is interpreted to be caused by a reaction controlled by diffusion in the salt that penetrates into the porous layer formed by the destabilization. The parabolic rate constant in mixed sodium metavanadate - sodium sulfate melts was found to be proportional to the SO3 partial pressure and the square of the metavanadate concentration. In-situ Raman spectroscopic measurements allowed simultaneous observations of the ceramic phases and salt chemistry during the attack process.

Preparation of antimicrobial membranes: coextrusion of poly(lactic acid) and Nisaplin in the presence of Plasticizers.

PubMed

Liu, Linshu; Jin, Tony Z; Coffin, David R; Hicks, Kevin B

2009-09-23

Nisin is a naturally occurring antimicrobial polypeptide and is popularly used in the food and food-packaging industries. Nisin is deactivated at temperatures higher than 120 degrees C and, therefore, cannot be directly incorporated into poly(L-lactic acid) (PLA), a biomass-derived biodegradable polymer, by coextrusion because PLA melts at temperatures around 160 degrees C or above. However, PLA can remain in a melt state at temperatures below the T(m) in the presence of lactic acid or other plasticizers. In the present study, PLA was coextruded with lactic acid, or lactide, or glycerol triacetate at 160 degrees C. After the PLA was melted, the temperature of the barrels was reduced to 120 degrees C, and then Nisaplin, the commercial formulation of nisin, was added and the extrusion was continued. The resultant extrudates possess the capability to suppress the growth of the pathogenic bacterial Listeria monocytogenes , demonstrating a significant antimicrobial activity. The present study provides a simple method to produce PLA-based antimicrobial membranes. The method can also be used for the coextrusion of other heat-sensitive substances and thermoplastics with high melting temperature.

Picosecond dynamics from lanthanide chloride melts

NASA Astrophysics Data System (ADS)

Kalampounias, Angelos G.

2012-12-01

The picosecond dynamics of molten lanthanide chlorides is studied by means of vibrational spectroscopy. Polarized Raman spectra of molten LaCl3, NdCl3, GdCl3, DyCl3, HoCl3 and YCl3 are fitted to a model enabling to obtain the times of vibrational dephasing, tν and vibrational frequency modulation tω. Our aim is to find possible sensitive indicators of short-time dynamics. It has been found that all lanthanide chlorides exhibit qualitative similarities in the vibrational relaxation and frequency modulation times in the molten state. It appears that the vibrational correlation functions of all melts comply with the Rothschild approach assuming that the environmental modulation is described by a stretched exponential decay. The evolution of the dispersion parameter α indicates the deviation of the melts from the model simple liquid and the similar local environment in which the oscillator is placed and with which it is coupled. The "packing" of the anions around central La3+ cation seems to be the key factor for the structure and the dynamics of the melts. The results are discussed in the framework of the current phenomenological status of the field.

Analysis of impact melt and vapor production in CTH for planetary applications

DOE PAGES

Quintana, S. N.; Crawford, D. A.; Schultz, P. H.

2015-05-19

This study explores impact melt and vapor generation for a variety of impact speeds and materials using the shock physics code CTH. The study first compares the results of two common methods of impact melt and vapor generation to demonstrate that both the peak pressure method and final temperature method are appropriate for high-speed impact models (speeds greater than 10 km/s). However, for low-speed impact models (speeds less than 10 km/s), only the final temperature method is consistent with laboratory analyses to yield melting and vaporization. Finally, a constitutive model for material strength is important for low-speed impacts because strengthmore » can cause an increase in melting and vaporization.« less

Analysis of impact melt and vapor production in CTH for planetary applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Quintana, S. N.; Crawford, D. A.; Schultz, P. H.

This study explores impact melt and vapor generation for a variety of impact speeds and materials using the shock physics code CTH. The study first compares the results of two common methods of impact melt and vapor generation to demonstrate that both the peak pressure method and final temperature method are appropriate for high-speed impact models (speeds greater than 10 km/s). However, for low-speed impact models (speeds less than 10 km/s), only the final temperature method is consistent with laboratory analyses to yield melting and vaporization. Finally, a constitutive model for material strength is important for low-speed impacts because strengthmore » can cause an increase in melting and vaporization.« less

Study of ultrasonic melt treatment on the quality of horizontal continuously cast Al-1%Si alloy.

PubMed

Li, Xin-Tao; Li, Ting-Ju; Li, Xi-Meng; Jin, Jun-Ze

2006-02-01

The fluctuation of the melt temperature in a tundish was measured during casting and experiments were conducted to investigate the effects of ultrasonic melt treatment on the surface quality and solidification structures of Al-1%Si ingots. The results show that the uniformity of melt temperature was enhanced with the application of ultrasonic melt treatment. When the ultrasonic power is 1,000W, the surface quality was evidently improved and grains of cast ingots were refined. Moreover, EPMA analysis was adopted to study the relationship between the ultrasonic power and boundary segregation of Si element. The result shows that boundary segregation is suppressed with the increase of ultrasonic power and the phenomenon was theoretically interpreted.

Arctic melt ponds and bifurcations in the climate system

NASA Astrophysics Data System (ADS)

Sudakov, I.; Vakulenko, S. A.; Golden, K. M.

2015-05-01

Understanding how sea ice melts is critical to climate projections. In the Arctic, melt ponds that develop on the surface of sea ice floes during the late spring and summer largely determine their albedo - a key parameter in climate modeling. Here we explore the possibility of a conceptual sea ice climate model passing through a bifurcation point - an irreversible critical threshold as the system warms, by incorporating geometric information about melt pond evolution. This study is based on a bifurcation analysis of the energy balance climate model with ice-albedo feedback as the key mechanism driving the system to bifurcation points.

Metals processing control by counting molten metal droplets

DOEpatents

Schlienger, Eric; Robertson, Joanna M.; Melgaard, David; Shelmidine, Gregory J.; Van Den Avyle, James A.

2000-01-01

Apparatus and method for controlling metals processing (e.g., ESR) by melting a metal ingot and counting molten metal droplets during melting. An approximate amount of metal in each droplet is determined, and a melt rate is computed therefrom. Impedance of the melting circuit is monitored, such as by calculating by root mean square a voltage and current of the circuit and dividing the calculated current into the calculated voltage. Analysis of the impedance signal is performed to look for a trace characteristic of formation of a molten metal droplet, such as by examining skew rate, curvature, or a higher moment.

High-resolution melting analysis (HRM) for differentiation of four major Taeniidae species in dogs Taenia hydatigena, Taenia multiceps, Taenia ovis, and Echinococcus granulosus sensu stricto.

PubMed

Dehghani, Mansoureh; Mohammadi, Mohammad Ali; Rostami, Sima; Shamsaddini, Saeedeh; Mirbadie, Seyed Reza; Harandi, Majid Fasihi

2016-07-01

Tapeworms of the genus Taenia include several species of important parasites with considerable medical and veterinary significance. Accurate identification of these species in dogs is the prerequisite of any prevention and control program. Here, we have applied an efficient method for differentiating four major Taeniid species in dogs, i.e., Taenia hydatigena, T. multiceps, T. ovis, and Echinococcus granulosus sensu stricto. High-resolution melting (HRM) analysis is simpler, less expensive, and faster technique than conventional DNA-based assays and enables us to detect PCR amplicons in a closed system. Metacestode samples were collected from local abattoirs from sheep. All the isolates had already been identified by PCR-sequencing, and their sequence data were deposited in the GenBank. Real-time PCR coupled with HRM analysis targeting mitochondrial cox1 and ITS1 genes was used to differentiate taeniid species. Distinct melting curves were obtained from ITS1 region enabling accurate differentiation of three Taenia species and E. granulosus in dogs. The HRM curves of Taenia species and E .granulosus were clearly separated at Tm of 85 to 87 °C. In addition, double-pick melting curves were produced in mixed infections. Cox1 melting curves were not decisive enough to distinguish four taeniids. In this work, the efficiency of HRM analysis to differentiate four major taeniid species in dogs has been demonstrated using ITS1 gene.

Rapid Detection Method for the Four Most Common CHEK2 Mutations Based on Melting Profile Analysis.

PubMed

Borun, Pawel; Salanowski, Kacper; Godlewski, Dariusz; Walkowiak, Jaroslaw; Plawski, Andrzej

2015-12-01

CHEK2 is a tumor suppressor gene, and the mutations affecting the functionality of the protein product increase cancer risk in various organs. The elevated risk, in a significant percentage of cases, is determined by the occurrence of one of the four most common mutations in the CHEK2 gene, including c.470T>C (p.I157T), c.444+1G>A (IVS2+1G>A), c.1100delC, and c.1037+1538_1224+328del5395 (del5395). We have developed and validated a rapid and effective method for their detection based on high-resolution melting analysis and comparative-high-resolution melting, a novel approach enabling simultaneous detection of copy number variations. The analysis is performed in two polymerase chain reactions followed by melting analysis, without any additional reagents or handling other than that used in standard high-resolution melting. Validation of the method was conducted in a group of 103 patients with diagnosed breast cancer, a group of 240 unrelated patients with familial history of cancer associated with the CHEK2 gene mutations, and a 100-person control group. The results of the analyses for all three groups were fully consistent with the results from other methods. The method we have developed improves the identification of the CHEK2 mutation carriers, reduces the cost of such analyses, as well as facilitates their implementation. Along with the increased efficiency, the method maintains accuracy and reliability comparable to other more labor-consuming techniques.

A spectroscopic and computational study of Al(III) complexes in sodium cryolite melts: ionic composition in a wide range of cryolite ratios.

PubMed

Nazmutdinov, Renat R; Zinkicheva, Tamara T; Vassiliev, Sergey Yu; Glukhov, Dmitri V; Tsirlina, Galina A; Probst, Michael

2010-04-01

The structure of sodium cryolite melts was studied using Raman spectroscopy and quantum chemical calculations performed at the density functional theory level. The existence of bridged forms in the melts was argued first from the analysis of experimental Raman spectra. In the quantum chemical modelling emphasis was put on the construction of potential energy surfaces describing the formation/dissociation of certain complex species. Effects of the ionic environment were found to play a crucial role in the energetics of model processes. The structure of the simplest possible polymeric forms involving two Al centres linked through F atoms ("dimers") was thoroughly investigated. The calculated equilibrium constants and model Raman spectra yield additional evidence in favour of the dimers. This agrees with a self-consistent analysis of a series of Raman spectra for a wide range of the melt composition. Copyright 2010. Published by Elsevier B.V.

Increased ocean-induced melting triggers glacier retreat in northwest and southeast Greenland

NASA Astrophysics Data System (ADS)

Wood, M.; Rignot, E. J.; Fenty, I. G.; Menemenlis, D.; Millan, R.; Morlighem, M.; Mouginot, J.

2017-12-01

Over the past 30 years, the tidewater glaciers of northwest, central west, and southeast Greenland have exhibited widespread retreat, yet we observe different behaviors from one glacier to the next, sometimes within the same fjord. This retreat has been synchronous with oceanic warming in Baffin Bay and the Irminger Sea. Here, we estimate the ocean-induced melt rate of marine-terminating glaciers in these sectors of the Greenland Ice Sheet using simulations from the MITgcm ocean model for various water depths, ocean thermal forcing (TF) and subglacial water fluxes (SG). We use water depth from Ocean Melting Greenland (OMG) bathymetry and inverted airborne gravity, ocean thermal forcing from the Estimating the Circulation and Climate of the Ocean (Phase II, ECCO2) combined with CTD data from 2012 and 2015, and time series of subglacial water flux combining runoff production from the 1-km Regional Atmospheric Climate Model (RACMO2.3) with basal melt beneath land ice from the JPL/UCI ISSM model. Time series of melt rates are formed as a function of grounding line depth, SG flux and TF. We compare the results with the history of ice velocity and ice front retreat to quantify the impact of ice melt by the ocean over past three decades. We find that the timing of ice front retreat coincides with enhanced ocean-induced melt and that abrupt retreat is induced when additional ablation exceeds the magnitude of natural seasonal variations of the glacier front. Sverdrup Gletscher, Umiamako Isbrae, and the northern branch Puisortoq Gletscher in northwest, central west, and southwest Greenland, respectively, began multi-kilometer retreats coincident with ocean warming and enhanced melt. Limited retreat is observed where the bathymetry is shallow, on a prograde slope or glacier is stuck on a sill, e.g. Ussing Braeer in the northwest, Sermeq Avannarleq in central west, and Skinfaxe Gletscher in the southeast. These results illustrate the sensitivity of glaciers to changes in oceanic forcing and the modulating effect of bathymetry on their rate and magnitude of retreat. This work was carried out under a grant with NASA Cryosphere Program and for the EVS-2 Ocean Melting Greenland (OMG) mission.

Major and Trace Element Analysis of Natural and Experimental Igneous Systems using LA-ICP-MS

NASA Technical Reports Server (NTRS)

Jenner, Frances E.; Arevalo, Ricardo D., Jr.

2016-01-01

Major- and trace-element compositions of minerals provide valuable information on a variety of global Earth-system processes, including melting of distinct mantle reservoirs, the growth and evolution of the Earths crust and the formation of economically viable ore deposits. In the mid-1980s and early 1990s, attempts were made to couple laser ablation (LA) systems to inductively coupled plasma mass spectrometry (ICPMS) instruments (e.g. Fryer et al. 1995; Jackson et al. 1992). The goal was to develop a rapid, highly sensitive in situ analytical technique to measure abundances and spatial distributions of trace elements in minerals and other geological samples. Elemental analysis using LAICPMS was envisaged as a quicker and less destructive means of chemical analysis (requiring only g quantities) than labour-intensive sample digestion and solution analysis (requiring mg-levels of material); and it would be a more cost-effective method than secondary ion mass spectrometry (SIMS) for the routine analysis of trace elements from solid samples. Furthermore, it would have lower limits-of-detection than electron probe microanalysis (EPMA) (e.g. Jackson et al. 1992; Eggins 2003).

Shifts in coastal Antarctic marine microbial communities during and after melt water-related surface stratification.

PubMed

Piquet, Anouk M-T; Bolhuis, Henk; Meredith, Michael P; Buma, Anita G J

2011-06-01

Antarctic coastal waters undergo major physical alterations during summer. Increased temperatures induce sea-ice melting and glacial melt water input, leading to strong stratification of the upper water column. We investigated the composition of micro-eukaryotic and bacterial communities in Ryder Bay, Antarctic Peninsula, during and after summertime melt water stratification, applying community fingerprinting (denaturing gradient gel electrophoresis) and sequencing analysis of partial 18S and 16S rRNA genes. Community fingerprinting of the eukaryotic community revealed two major patterns, coinciding with a period of melt water stratification, followed by a period characterized by regular wind-induced breakdown of surface stratification. During the first stratified period, we observed depth-related differences in eukaryotic fingerprints while differences in bacterial fingerprints were weak. Wind-induced breakdown of the melt water layer caused a shift in the eukaryotic community from an Actinocyclus sp.- to a Thalassiosira sp.-dominated community. In addition, a distinct transition in the bacterial community was found, but with a few days' delay, suggesting a response to the changes in the eukaryotic community rather than to the mixing event itself. Sequence analysis revealed a shift from an Alpha- and Gammaproteobacteria to a Cytophaga-Flavobacterium-Bacteroides-dominated community under mixed conditions. Our results show that melt water stratification and the transition to nonstabilized Antarctic surface waters may have an impact not only on micro-eukaryotic but also bacterial community composition. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Comparison of structure, morphology, and leach characteristics of multi-phase ceramics produced via melt processing and hot isostatic pressing

NASA Astrophysics Data System (ADS)

Dandeneau, Christopher S.; Hong, Tao; Brinkman, Kyle S.; Vance, Eric R.; Amoroso, Jake W.

2018-04-01

Melt processing of multi-phase ceramic waste forms offers potential advantages over traditional solid-state synthesis methods given both the prevalence of melters currently in use and the ability to reduce the possibility of airborne radionuclide contamination. In this work, multi-phase ceramics with a targeted hollandite composition of Ba1.0Cs0.3Cr1.0Al0.3Fe1.0Ti5.7O16 were fabricated by melt processing at 1675 °C and hot isostatic pressing (HIP) at 1250 and 1300 °C. X-ray diffraction analysis (XRD) confirmed hollandite as the major phase in all specimens. Zirconolite/pyrochlore peaks and weaker perovskite reflections were observed after melt processing, while HIP samples displayed prominent perovskite peaks and low-intensity zirconolite reflections. Melt processing produced specimens with large (>50 μm) well-defined hollandite grains, while HIP yielded samples with a more fine-grained morphology. Elemental analysis showed "islands" rich in Cs and Ti across the surface of the 1300 °C HIP sample, suggesting partial melting and partitioning of Cs into multiple phases. Photoemission data revealed multiple Cs 3d spin-orbit pairs for the HIP samples, with the lower binding energy doublets likely corresponding to Cs located in more leachable phases. Among all specimens examined, the melt-processed sample exhibited the lowest fractional release rates for Rb and Cs. However, the retention of Sr and Mo was greater in the HIP specimens.

Sensitivity of Alpine Snow and Streamflow Regimes to Climate Changes

NASA Astrophysics Data System (ADS)

Rasouli, K.; Pomeroy, J. W.; Marks, D. G.; Bernhardt, M.

2014-12-01

Understanding the sensitivity of hydrological processes to climate change in alpine areas with snow dominated regimes is of paramount importance as alpine basins show both high runoff efficiency associated with the melt of the seasonal snowpack and great sensitivity of snow processes to temperature change. In this study, meteorological data measured in a selection of alpine headwaters basins including Reynolds Mountain East, Idaho, USA, Wolf Creek, Yukon in Canada, and Zugspitze Mountain, Germany with climates ranging from arctic to continental temperate were used to study the snow and streamflow sensitivity to climate change. All research sites have detailed multi-decadal meteorological and snow measurements. The Cold Regions Hydrological Modelling platform (CRHM) was used to create a model representing a typical alpine headwater basin discretized into hydrological response units with physically based representations of snow redistribution by wind, complex terrain snowmelt energetics and runoff processes in alpine tundra. The sensitivity of snow hydrology to climate change was investigated by changing air temperature and precipitation using weather generating methods based on the change factors obtained from different climate model projections for future and current periods. The basin mean and spatial variability of peak snow water equivalent, sublimation loss, duration of snow season, snowmelt rates, streamflow peak, and basin discharge were assessed under varying climate scenarios and the most sensitive hydrological mechanisms to the changes in the different alpine climates were detected. The results show that snow hydrology in colder alpine climates is more resilient to warming than that in warmer climates, but that compensatory factors to warming such as reduced blowing snow sublimation loss and reduced melt rate should also be assessed when considering climate change impacts on alpine hydrology.

Synchrotron X-ray spectroscopic investigations of an Nb-bearing silicate melt in contact with an aqueous fluid

NASA Astrophysics Data System (ADS)

Mayanovic, R. A.; Anderson, A. J.; Bassett, W. A.; Chou, I.

2006-05-01

Understanding the structural properties of trace elements in hydrous silicate melts in contact with a hydrothermal fluid is fundamentally important for a better assessment of the role of such elements in silicate melts being subjected to hydrothermal processes. We describe the use of synchrotron x-ray microprobe techniques and the modified hydrothermal diamond-anvil cell for in-situ spectroscopic analysis of individual phases of a silicate-melt/fluid system. Synchrotron X-ray fluorescence (XRF) and Nb K-edge X-ray absorption fine structure (XAFS) measurements were made on sectors ID20 and ID13 at the Advanced Photon Source, at the Argonne National Laboratory, on a Nb-bearing granitic glass in H2O and separately in a 1 M Na2CO3 aqueous solution at temperatures ranging from 25 to 880 °C and at up to 700 MPa of pressure. Individual phases of the Nb-glass/fluid system (at low temperatures) or the hydrous-silicate-melt/fluid system (at elevated temperatures) were probed using an X-ray beam focused to a diameter of 5 μm at the location of the sample. XRF analysis shows that the Nb partitions selectively from the hydrous silicate melt into the aqueous fluid at high temperatures in the Nb-glass/Na2CO3/H2O system but not so in the Nb-glass/H2O system. Analysis of XAFS spectra measured from the hydrous silicate melt phase of the Nb-glass/H2O sample in the 450 to 700 °C range shows that the first shell contains six oxygen atoms at a distance of ~1.98 Å. Our results suggest that reorganization of the silicate structure surrounding Nb occurs in the melt when compared to that of the starting glass. The X-ray absorption near edge structure (XANES) spectra show a pre-edge peak feature located at ~18995 eV that exhibits sharpening and becomes more intensified in the 450 to 700 °C range. Fitting of the Nb K-edge XANES spectra measured from the melt is accomplished using FEFF8.28 and an atomic model NbSi4O6-4(Na, K). The model is based on the structure of fresnoite (Ba2TiSi2O8), in which an NbO6 octahedron unit is substituted for the TiO5 unit, four Na and four K atoms are placed alternately on nearby Ba atom sites, and four Si atoms are arranged in a single plane intersecting the NbO6 unit. The results from fitting indicate that the local structure of Nb in the silicate melt is altered from its local structure in the quenched glass before heating and in the glass after heating in the diamond anvil cell. The importance of in situ analysis of melts and hydrothermal fluids at various temperatures and pressures is discussed in the context of our study.

Mechanism Research on Melting Loss of Coppery Tuyere Small Sleeve in Blast Furnace

NASA Astrophysics Data System (ADS)

Chai, Yi-Fan; Zhang, Jian-Liang; Ning, Xiao-Jun; Wei, Guang-Yun; Chen, Yu-Ting

2016-01-01

The tuyere small sleeve in blast furnace works under poor conditions. The abnormal damage of it will severely affect the performance of the blast furnace, thus it should be replaced during the damping down period. So it is of great significance that we study and reduce the burnout of tuyere small sleeve. Melting loss is one case of its burnout. This paper studied the reasons of tuyere small sleeve's melting loss, through computational simulation and microscopic analysis of the melting section. The research shows that the temperature of coppery tuyere small sleeve is well distributed when there is no limescale in the lumen, and the temperature increases with the thickness of limescale. In addition, the interruption of circulating water does great harm to the tuyere small sleeve. The melting loss of tuyere small sleeve is caused by iron-slag erosion, with the occurrence of the melt metallurgical bonding and diffusion metallurgical combination.

Isotope analysis of crystalline impact melt rocks from Apollo 16 stations 11 and 13, North Ray Crater

NASA Technical Reports Server (NTRS)

Reimold, W. U.; Nyquist, L. E.; Bansal, B. M.; Shih, C.-Y.; Weismann, H.; Wooden, J. L.; Mackinnon, I. D. R.

1985-01-01

The North Ray Crater Target Rock Consortium was formed to study a large number of rake samples collected at Apollo 16 stations 11 and 13 with comparative chemical, mineralogical, and chronological techniques in order to provide a larger data base for the discussion of lunar highland evolution in the vicinity of the Apollo 16 landing region. The present investigation is concerned with Rb-Sr and Sm-Nd isotopic analyses of a number of whole-rock samples of feldspathic microporhyritic (FM) impact melt, a sample type especially abundant among the North Ray crater (station 11) sample collection. Aspects of sample mineralogy and analytical procedures are discussed, taking into account FM impact melt rocks 6715 and 63538, intergranular impact melt rock 67775, subophitic impact melt rock 67747, subophitic impact melt rock 67559, and studies based on the utilization of electron microscopy and mass spectroscopy.

Controlling electrode gap during vacuum arc remelting at low melting current

DOEpatents

Williamson, Rodney L.; Zanner, Frank J.; Grose, Stephen M.

1997-01-01

An apparatus and method for controlling electrode gap in a vacuum arc remelting furnace, particularly at low melting currents. Spectrographic analysis is performed of the metal vapor plasma, from which estimates of electrode gap are derived.

Development of melting temperature-based SYBR Green I polymerase chain reaction methods for multiplex genetically modified organism detection.

PubMed

Hernández, Marta; Rodríguez-Lázaro, David; Esteve, Teresa; Prat, Salomé; Pla, Maria

2003-12-15

Commercialization of several genetically modified crops has been approved worldwide to date. Uniplex polymerase chain reaction (PCR)-based methods to identify these different insertion events have been developed, but their use in the analysis of all commercially available genetically modified organisms (GMOs) is becoming progressively insufficient. These methods require a large number of assays to detect all possible GMOs present in the sample and thereby the development of multiplex PCR systems using combined probes and primers targeted to sequences specific to various GMOs is needed for detection of this increasing number of GMOs. Here we report on the development of a multiplex real-time PCR suitable for multiple GMO identification, based on the intercalating dye SYBR Green I and the analysis of the melting curves of the amplified products. Using this method, different amplification products specific for Maximizer 176, Bt11, MON810, and GA21 maize and for GTS 40-3-2 soybean were obtained and identified by their specific Tm. We have combined amplification of these products in a number of multiplex reactions and show the suitability of the methods for identification of GMOs with a sensitivity of 0.1% in duplex reactions. The described methods offer an economic and simple alternative to real-time PCR systems based on sequence-specific probes (i.e., TaqMan chemistry). These methods can be used as selection tests and further optimized for uniplex GMO quantification.

A new tape product for optical data storage

NASA Technical Reports Server (NTRS)

Larsen, T. L.; Woodard, F. E.; Pace, S. J.

1993-01-01

A new tape product has been developed for optical data storage. Laser data recording is based on hole or pit formation in a low melting metallic alloy system. The media structure, sputter deposition process, and media characteristics, including write sensitivity, error rates, wear resistance, and archival storage are discussed.

Molecular simultaneous detection of Cherry necrotic rusty mottle virus and Cherry green ring mottle virus by real-time RT-PCR and high resolution melting analysis

USDA-ARS?s Scientific Manuscript database

In this study, real-time RT-PCR assays were combined with high resolution melting (HRM) analysis for the simultaneous detection of Cherry necrotic rusty mottle virus (CNRMV) and Cherry green ring mottle virus (CGRMV) infection in sweet cherry trees. Detection of CNRMV and CGRMV was performed using a...

Effects of Melt Processing on Evolution of Structure in PEEK

NASA Technical Reports Server (NTRS)

Georgiev, Georgi; Dai, Patrick Shuanghua; Oyebode, Elizabeth; Cebe, Peggy; Capel, Malcolm

1999-01-01

We report on the effects of melt processing temperature on structure formation in Poly(ether-ether-ketone), PEEK. Real time Small Angle X-ray Scattering, SAXS, and thermal analysis are used to follow the melting behavior after various stages of processing. Assignment of peaks to structural entities within the material, the relative perfection of the crystals, and the possibility of their reorganization, are all influenced by the melt processing history. With the advent of high intensity synchrotron sources of X-radiation, polymer scientists gain a research tool which, when used along with thermal analysis, provides additional structural information about the crystals during growth and subsequent melting. PEEK is an engineering thermoplastic polymer with a very high glass transition temperature (145 C) and crystal melting point (337 C). PEEK has been the subject of recent studies by X-ray scattering in which melt and cold crystallization were followed in real-time. X-ray scattering and thermal studies have been used to address the formation of dual endothermic response which has been variously ascribed to lamellar insertion, dual crystal populations, or melting followed by re-crystallization. Another important issue is whether all of the amorphous phase is located in interlamellar regions, or alternatively whether some is located in "pockets" away from the crystalline lamellar stacks. The interpretation of scattering from lamellar stacks varies depending upon whether such amorphous pockets are formed. Some groups believe all of the amorphous phase is interlamellar. This leads to selection of a smaller thickness for the crystals. Other groups suggest that most amorphous phase is not interlamellar, and this leads to the suggestion that the crystal thickness is larger than the amorphous layer within the stacks. To investigate these ideas, we used SAXS and Differential Scanning Calorimetry to compare results of single and dual stage melt crystallization of PEEK using a treatment scheme involving annealing/crystallization at T(sub a1) followed by annealing at T(sub a2) where either T(sub a1) < T(sub a2) or T(sub a1) > T(sub a2). We proposed a model to explain multiple melting endotherms in PPS, treated according to one or two-stage melt or cold crystallization. Key features of this model are that multiple endotherms: (1) are due to reorganization/recrystallization after cold crystallization; and, (2) are dominated by crystal morphology after melt crystallization at high T. In other words, multiple distinct crystal populations are formed by the latter treatment, leading to observation of multiple melting. PEEK 45OG pellets (ICI Americas) were the starting material for this study. Films were compression molded at 400 C, then quenched to ice water. Samples were heated to 375 C in a Mettler FP80 hot stage and held for three min. to erase crystal seeds before cooling them to T(sub a1) = 280 C . Samples were held at T(sub a2) for a period of time, then immediately heated to 360 C. In the second treatment samples were held at T(sub a1) = 31 C for different crystallization times t(sub c) then cooled to 295 C and held 15 min. In situ (SAXS) experiments were performed at the Brookhaven National Synchrotron Light Source with the sample located inside the Mettler hot stage. The system was equipped with a two-dimensional position sensitive detector. The sample to detector distance was 172.7 cm and the X-ray wavelength was 1.54 Angstroms. SAXS data were taken continuously during the isothermal periods and during the heating to 360 C at 5 C/min. Each SAXS scan was collected for 30 sec. Since the samples were isotropic, circular integration was used to increase the signal to noise ratio. After dual stage melt crystallization with T(sub a1) < T(sub a2) the lower melting endotherm arises from holding at T(sub a1). During cooling a broad distribution of crystals forms, and the low-melting tail is perfected during T(sub al). Heating to T(sub a2) melts these imperfect crystals and allows others with greater average long spacing to form in their place. After dual stage crystallization with T(sub a1) > T(sub a2), the amount of space remaining for additional growth at T(sub a2) depends upon the holding time at T(sub a1). The long period of crystals formed at T(sub a2) is smaller than that formed at T(sub a1) due to growth in a now-restricted geometry. Perfection of crystals is seen as an increase of the intensity of the population scattering at higher s, while the intensity of the population scattering at lower s stays constant. During heating from below to above the minor endotherm, we see rapid decrease of the intensity of the X-ray scattering corresponding to the population of crystals scattering in the shoulder. Another important observation is that after the sample is annealed at 295 C, the shoulder intensity is restored once again. The population scattering at higher s remains longer before it disappears in the sample treated to the second stage of melt crystallization, compared to the sample crystallized with a single stage. This could be interpreted as an effect of continued perfection of the less perfect population, which is also reflected in the increased melting temperature of the smaller endotherm as the holding time at 295 C increases. In the corresponding DSC scans we see a shift in the area and the peak temperature of the lower melting endotherm with an increase of the annealing time.

Fault rheology beyond frictional melting.

PubMed

Lavallée, Yan; Hirose, Takehiro; Kendrick, Jackie E; Hess, Kai-Uwe; Dingwell, Donald B

2015-07-28

During earthquakes, comminution and frictional heating both contribute to the dissipation of stored energy. With sufficient dissipative heating, melting processes can ensue, yielding the production of frictional melts or "pseudotachylytes." It is commonly assumed that the Newtonian viscosities of such melts control subsequent fault slip resistance. Rock melts, however, are viscoelastic bodies, and, at high strain rates, they exhibit evidence of a glass transition. Here, we present the results of high-velocity friction experiments on a well-characterized melt that demonstrate how slip in melt-bearing faults can be governed by brittle fragmentation phenomena encountered at the glass transition. Slip analysis using models that incorporate viscoelastic responses indicates that even in the presence of melt, slip persists in the solid state until sufficient heat is generated to reduce the viscosity and allow remobilization in the liquid state. Where a rock is present next to the melt, we note that wear of the crystalline wall rock by liquid fragmentation and agglutination also contributes to the brittle component of these experimentally generated pseudotachylytes. We conclude that in the case of pseudotachylyte generation during an earthquake, slip even beyond the onset of frictional melting is not controlled merely by viscosity but rather by an interplay of viscoelastic forces around the glass transition, which involves a response in the brittle/solid regime of these rock melts. We warn of the inadequacy of simple Newtonian viscous analyses and call for the application of more realistic rheological interpretation of pseudotachylyte-bearing fault systems in the evaluation and prediction of their slip dynamics.

Molecular mechanism of melting of a helical polymer crystal: Role of conformational order, packing and mobility of polymers

NASA Astrophysics Data System (ADS)

Cheerla, Ramesh; Krishnan, Marimuthu

2018-03-01

The molecular mechanism of melting of a superheated helical polymer crystal has been investigated using isothermal-isobaric molecular dynamics simulation that allows anisotropic deformation of the crystal lattice. A detailed microscopic analysis of the onset and progression of melting and accompanying changes in the polymer conformational order, translational, and orientation order of the solid along the melting pathway is presented. Upon gradual heating from room temperature to beyond the melting point at ambient pressure, the crystal exhibits signatures of premelting well below the solid-to-liquid melting transition at the melting point. The melting transition is manifested by abrupt changes in the crystal volume, lattice energy, polymer conformation, and dynamical properties. In the premelting stage, the crystal lattice structure and backbone orientation of the polymer chains are retained but with the onset of weakening of long-range helical order and interchain packing of polymers perpendicular to the fibre axis of the crystal. The premelting also marks the onset of conformational defects and anisotropic solid-state diffusion of polymers along the fibre axis. The present study underscores the importance of the interplay between intermolecular packing, interactions, and conformational dynamics at the atomic level in determining the macroscopic melting behavior of polymer crystals.

Determination of Interannual to Decadal Changes in Ice Sheet Mass Balance from Satellite Altimetry

NASA Technical Reports Server (NTRS)

Zwally, H. Jay; Busalacchi, Antonioa J. (Technical Monitor)

2001-01-01

A major uncertainty in predicting sea level rise is the sensitivity of ice sheet mass balance to climate change, as well as the uncertainty in present mass balance. Since the annual water exchange is about 8 mm of global sea level equivalent, the +/- 25% uncertainty in current mass balance corresponds to +/- 2 mm/yr in sea level change. Furthermore, estimates of the sensitivity of the mass balance to temperature change range from perhaps as much as - 10% to + 10% per K. Although the overall ice mass balance and seasonal and inter-annual variations can be derived from time-series of ice surface elevations from satellite altimetry, satellite radar altimeters have been limited in spatial coverage and elevation accuracy. Nevertheless, new data analysis shows mixed patterns of ice elevation increases and decreases that are significant in terms of regional-scale mass balances. In addition, observed seasonal and interannual variations in elevation demonstrate the potential for relating the variability in mass balance to changes in precipitation, temperature, and melting. From 2001, NASA's ICESat laser altimeter mission will provide significantly better elevation accuracy and spatial coverage to 86 deg latitude and to the margins of the ice sheets. During 3 to 5 years of ICESat-1 operation, an estimate of the overall ice sheet mass balance and sea level contribution will be obtained. The importance of continued ice monitoring after the first ICESat is illustrated by the variability in the area of Greenland surface melt observed over 17-years and its correlation with temperature. In addition, measurement of ice sheet changes, along with measurements of sea level change by a series of ocean altimeters, should enable direct detection of ice level and global sea level correlations.

Partitioning the Water Budget in a Glacierized Basin

NASA Astrophysics Data System (ADS)

O'Neel, S.; Sass, L.; McGrath, D.; McNeil, C.; Myers, K. F.; Bergstrom, A.; Koch, J. C.; Ostman, J. S.; Arendt, A. A.; LeWinter, A.; Larsen, C. F.; Marshall, H. P.

2017-12-01

Glaciers couple to the ecosystems in which they reside through their mass balance and subsequent runoff. The unique timing and composition of glacier runoff notably impacts ecological and socio-economically important processes, including thermal modulation of streams, nearshore primary production, and groundwater exchange. Predicting how these linkages will evolve as glaciers continue to retreat requires a better understanding of basin- to region-scale water budgets. Here we develop a partitioned water balance for Alaska's Wolverine Glacier basin for 2016. Our presentation will highlight mass-balance forcing and sensitivity, as well as analyses of hydrometric and geochemical partitioning. These observations provide constraints for hypsometry-based regional projections of glacier change, which form the basis of future biogeochemical scenarios. Local climate records show relatively minor warming and drying over the 1967 -2016 interval, yet the impact on the glacier was substantial; the average annual balance rate over the study interval is -0.5 m/yr. We performed a sensitivity experiment that suggests that elevation-independent processes drive first-order variability in glacier-wide mass balance solutions Analysis of runoff and precipitation data suggest that previously ignored components of the hydrologic cycle (groundwater, evapotranspiration, off-glacier snowpack storage, and snow redistribution) may substantially contribute to the basin wide water budget. Initial geochemical assessments (carbon, water isotopes, major ions) highlight unique source signatures (glacier-derived, snow-melt, groundwater), which will be further explored using a mixing model approach. Applying a range of climate forcings over centennial time-scales suggests the regional equilibrium line altitude is likely to increase by more than 100 m, which will result in extensive glacier area losses. Such changes will likely modify the runoff from this basin by increasing inter-annual streamflow variability and increasing the fraction of runoff delivered early in the melt season.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Williams, M. S.; Miller, D. H.; Fowley, M. D.

The Savannah River National Laboratory (SRNL) was tasked to support validation of the Defense Waste Processing Facility (DWPF) melter offgas flammability model for the nitric-glycolic (NG) flowsheet. The work supports Deliverable 4 of the DWPF & Saltstone Facility Engineering Technical Task Request (TTR)1 and is supplemental to the Cold Cap Evaluation Furnace (CEF) testing conducted in 2014.2 The Slurry-fed Melt Rate Furnace (SMRF) was selected for the supplemental testing as it requires significantly less resources than the CEF and could provide a tool for more rapid analysis of melter feeds in the future. The SMRF platform has been used previouslymore » to evaluate melt rate behavior of DWPF glasses, but was modified to accommodate analysis of the offgas stream. Additionally, the Melt Rate Furnace (MRF) and Quartz Melt Rate Furnace (QMRF) were utilized for evaluations. MRF data was used exclusively for melt behavior observations and REDuction/OXidation (REDOX) prediction comparisons and will be briefly discussed in conjunction with its support of the SMRF testing. The QMRF was operated similarly to the SMRF for the same TTR task, but will be discussed in a separate future report. The overall objectives of the SMRF testing were to; 1) Evaluate the efficacy of the SMRF as a platform for steady state melter testing with continuous feeding and offgas analysis; and 2) Generate supplemental melter offgas flammability data to support the melter offgas flammability modelling effort for DWPF implementation of the NG flowsheet.« less

Melting analysis on microbeads in rapid temperature-gradient inside microchannels for single nucleotide polymorphisms detectiona)

PubMed Central

Li, Kan-Chien; Ding, Shih-Torng; Lin, En-Chung; Wang, Lon (Alex); Lu, Yen-Wen

2014-01-01

A continuous-flow microchip with a temperature gradient in microchannels was utilized to demonstrate spatial melting analysis on microbeads for clinical Single Nucleotide Polymorphisms (SNPs) genotyping on animal genomic DNA. The chip had embedded heaters and thermometers, which created a rapid and yet stable temperature gradient between 60 °C and 85 °C in a short distance as the detection region. The microbeads, which served as mobile supports carrying the target DNA and fluorescent dye, were transported across the temperature gradient. As the surrounding temperature increased, the fluorescence signals of the microbeads decayed with this relationship being acquired as the melting curve. Fast DNA denaturation, as a result of the improved heat transfer and thermal stability due to scaling, was also confirmed. Further, each individual microbead could potentially bear different sequences and pass through the detection region, one by one, for a series of melting analysis, with multiplex, high-throughput capability being possible. A prototype was tested with target DNA samples in different genotypes (i.e., wild and mutant types) with a SNP location from Landrace sows. The melting temperatures were obtained and compared to the ones using a traditional tube-based approach. The results showed similar levels of SNP discrimination, validating our proposed technique for scanning homozygotes and heterozygotes to distinguish single base changes for disease research, drug development, medical diagnostics, agriculture, and animal production. PMID:25553186

Evaluation of methods for characterizing the melting curves of a high temperature cobalt-carbon fixed point to define and determine its melting temperature

NASA Astrophysics Data System (ADS)

Lowe, David; Machin, Graham

2012-06-01

The future mise en pratique for the realization of the kelvin will be founded on the melting temperatures of particular metal-carbon eutectic alloys as thermodynamic temperature references. However, at the moment there is no consensus on what should be taken as the melting temperature. An ideal melting or freezing curve should be a completely flat plateau at a specific temperature. Any departure from the ideal is due to shortcomings in the realization and should be accommodated within the uncertainty budget. However, for the proposed alloy-based fixed points, melting takes place over typically some hundreds of millikelvins. Including the entire melting range within the uncertainties would lead to an unnecessarily pessimistic view of the utility of these as reference standards. Therefore, detailed analysis of the shape of the melting curve is needed to give a value associated with some identifiable aspect of the phase transition. A range of approaches are or could be used; some purely practical, determining the point of inflection (POI) of the melting curve, some attempting to extrapolate to the liquidus temperature just at the end of melting, and a method that claims to give the liquidus temperature and an impurity correction based on the analytical Scheil model of solidification that has not previously been applied to eutectic melting. The different methods have been applied to cobalt-carbon melting curves that were obtained under conditions for which the Scheil model might be valid. In the light of the findings of this study it is recommended that the POI continue to be used as a pragmatic measure of temperature but where required a specified limits approach should be used to define and determine the melting temperature.

Melt Flow before Crystal Seeding in Cz Si Growth with Transversal MF

NASA Astrophysics Data System (ADS)

Iizuka, Masaya; Mukaiyama, Yuji; Demina, S. E.; Kalaev, V. V.

2017-06-01

Industrial Cz growth of Si crystal of 300 mm and higher diameter usually requires DC magnetic fields (MFs) to suppress turbulence in the melt. We present 3D unsteady analysis of melt turbulent convection in an industrial Cz system coupled with the effect of the transversal MF for different argon gas flow rates for the stage before crystal seeding. We have performed detailed 2D axisymmetric modeling of global heat transfer in the whole Cz furnace. Radiative heat fluxes obtained in 2D modeling have been used in detailed 3D steady and unsteady modeling of crystallization zone. LES method is applied as a predictive approach for modeling of turbulent flow of silicon melt. We have obtained flow structure and temperature distribution in the melt, which were different from previously reported data. We have observed a well-fixed dark spike which includes low temperature melt area on the melt free surface in MF cases. These results indicates that MF and argon flow rate conditions are important to achieve stable positioning of the dark spike on the melt free surface for optimized crystal seeding without uncontrollable meltdown and single crystal structure loss.

Update on the Greenland Ice Sheet Melt Extent: 1979-1999

NASA Technical Reports Server (NTRS)

Abdalati, Waleed; Steffen, Konrad

2000-01-01

Analysis of melt extent on the Greenland ice sheet is updated to span the time period 1979-1999 is examined along with its spatial and temporal variability using passive microwave satellite data. In order to acquire the full record, the issue of continuity between previous passive microwave sensors (SMMR, SSM/I F-8, and SSM/I F-11), and the most recent SSM/I F-13 sensor is addressed. The F-13 Cross-polarized gradient ratio (XPGR) melt-classification threshold is determined to be -0.0154. Results show that for the 21-year record, an increasing melt trend of nearly 1 %/yr is observed, and this trend is driven by conditions on in the western portion of the ice sheet, rather than the east, where melt appears to have decreased slightly. Moreover, the eruption of Mt. Pinatubo in 1991 is likely to have had some impact the melt, but not as much as previously suspected. The 1992 melt anomaly is 1.7 standard deviations from the mean. Finally, the relationship between coastal temperatures and melt extent suggest an increase in surface runoff contribution to sea level of 0.31 mm/yr for a 1 C temperature rise.

Isentropic compression of liquid metals near the melt line

NASA Astrophysics Data System (ADS)

Seagle, Christopher; Porwitzky, Andrew

2017-06-01

A series of experiments designed to study the liquid metal response to isentropic compression have been conducted at Sandia's Z Pulsed Power Facility. Cerium and Tin have been shock melted by driving a quasi-ballistic flyer into the samples followed by a ramp compression wave generated by an increased driving magnetic field. The sound speed of the liquid metals has been investigated with the purpose of exploring possible solidification on ramp compression. Additional surface sensitive diagnostics have been employed to search for signatures of solidification at the window interface. Results of these experiments will be discussed in relation to the existing equation of state models and phase diagrams for these materials as well as future plans for exploring the response of liquid metals near the melt line. Sandia National Laboratories is a multi-mission laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

Formation of relief on Europa's surface and analysis of a melting probe movement through the ice

NASA Astrophysics Data System (ADS)

Erokhina, O. S.; Chumachenko, E. N.; Dunham, D. W.; Aksenov, S. A.; Logashina, I. V.

2013-12-01

These days, studies of planetary bodies' are of great interest. And of special interest are the icy moons of the giant planets like Jupiter and Saturn. Analysis of 'Voyager 1', 'Voyager 2', 'Galileo' and 'Cassini' spacecraft data showed that icy covers were observed on Jupiter's moons Ganymede, Europa and Calisto, and Saturn's moons Titan and Enceladus. Of particular interest is the relatively smooth surface of Europa. The entire surface is covered by a system of bands, valleys, and ridges. These structures are explained by the mobility of surface ice, and the impact of stress and large-scale tectonic processes. Also conditions on these moons allow speculation about possible life, considering these moons from an astrobiological point of view. To study the planetary icy body in future space missions, one of the problems to solve is the problem of design of a special device capable of penetrating through the ice, as well as the choice of the landing site of this probe. To select a possible landing site, analysis of Europa's surface relief formation is studied. This analysis showed that compression, extention, shearing, and bending can influence some arbitrarily separated section of Europe's icy surface. The computer simulation with the finite element method (FEM) was performed to see what types of defects could arise from such effects. The analysis showed that fractures and cracks could have various forms depending on the stress-strained state arising in their vicinity. Also the problem of a melting probe's movement through the ice is considered: How the probe will move in low gravity and low atmospheric pressure; whether the hole formed in the ice will be closed when the probe penetrates far enough or not; what is the influence of the probe's characteristics on the melting process; what would be the order of magnitude of the penetration velocity. This study explores the technique based on elasto-plastic theory and so-called 'solid water' theory to estimate the melting velocity and to study the melting process. Based on this technique, several cases of melting probe motion are considered, the velocity of the melting probe is estimated, the influence of different factors are studied and discussed, and an easy way to optimize the parameters of the probe is proposed.

Selective Laser Melting of Pure Copper

NASA Astrophysics Data System (ADS)

Ikeshoji, Toshi-Taka; Nakamura, Kazuya; Yonehara, Makiko; Imai, Ken; Kyogoku, Hideki

2017-12-01

Appropriate building parameters for selective laser melting of 99.9% pure copper powder were investigated at relatively high laser power of 800 W for hatch pitch in the range from 0.025 mm to 0.12 mm. The highest relative density of the built material was 99.6%, obtained at hatch pitch of 0.10 mm. Building conditions were also studied using transient heat analysis in finite element modeling of the liquidation and solidification of the powder layer. The estimated melt pool length and width were comparable to values obtained by observations using a thermoviewer. The trend for the melt pool width versus the hatch pitch agreed with experimental values.

Selective Laser Melting of Pure Copper

NASA Astrophysics Data System (ADS)

Ikeshoji, Toshi-Taka; Nakamura, Kazuya; Yonehara, Makiko; Imai, Ken; Kyogoku, Hideki

2018-03-01

Appropriate building parameters for selective laser melting of 99.9% pure copper powder were investigated at relatively high laser power of 800 W for hatch pitch in the range from 0.025 mm to 0.12 mm. The highest relative density of the built material was 99.6%, obtained at hatch pitch of 0.10 mm. Building conditions were also studied using transient heat analysis in finite element modeling of the liquidation and solidification of the powder layer. The estimated melt pool length and width were comparable to values obtained by observations using a thermoviewer. The trend for the melt pool width versus the hatch pitch agreed with experimental values.

In situ major and trace element analysis of amphiboles in quartz monzodiorite porphyry from the Tonglvshan Cu-Fe (Au) deposit, Hubei Province, China: insights into magma evolution and related mineralization

NASA Astrophysics Data System (ADS)

Duan, Deng-Fei; Jiang, Shao-Yong

2017-05-01

The Tonglvshan deposit is the largest Cu-Fe (Au) skarn deposit in the Edong district, which is located in the westernmost part of the Middle and Lower Yangtze River metallogenic belt, China. In this study, we performed a detailed in situ analysis of major and trace elements in amphiboles from the ore-related Tonglvshan quartz monzodiorite porphyry using electron microprobe (EMPA) analysis and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). Two distinct populations of amphiboles, which can be distinguished by their aluminum content, are found in the quartz monzodiorite porphyry. The low-aluminum (Low-Al) amphiboles are subhedral or anhedral and formed at 46.3-73.5 MPa and 713-763 °C. In contrast, the high-aluminum (High-Al) amphiboles are euhedral and formed at 88-165 MPa and 778-854 °C. Some euhedral amphiboles are partially or completely replaced by Low-Al amphibole. The compositions of parental melts in equilibrium with the High-Al amphibole ( Melt 1) and Low-Al amphibole ( Melt 2) were computed by applying solid/liquid partition coefficients. This modeling shows that magma in equilibrium with High-Al amphibole ( Melt 1) underwent 40% fractional crystallization of amphibole, plagioclase and apatite at a depth of 5 km to evolve to magma in equilibrium with Low-Al amphibole ( Melt 2). Copper enrichment occurred in the magma after undergoing fractional crystallization. The magma had a high oxygen fugacity, increasing from NNO + 1 ( Melt 1) through NNO + 2 to HM ( Melt 2), which could have prevented the loss of Cu (and possibly Au) to sulfide minerals during crystallization. Finally, the evolved magma intruded to shallower depths, where it presumably exsolved aqueous ore-forming fluids. Therefore, the large Cu-Fe-Au reserves of the Tonglvshan deposit can likely be attributed to a combination of controlling factors, including high oxygen fugacity, fractional crystallization, fluid exsolution, and a shallow emplacement depth.

Amundsen Sea simulation with optimized ocean, sea ice, and thermodynamic ice shelf model parameters

NASA Astrophysics Data System (ADS)

Nakayama, Y.; Menemenlis, D.; Schodlok, M.; Heimbach, P.; Nguyen, A. T.; Rignot, E. J.

2016-12-01

Ice shelves and glaciers of the West Antarctic Ice Sheet are thinning and melting rapidly in the Amundsen Sea (AS). This is thought to be caused by warm Circumpolar Deep Water (CDW) that intrudes via submarine glacial troughs located at the continental shelf break. Recent studies, however, point out that the depth of thermocline, or thickness of Winter Water (WW, potential temperature below -1 °C located above CDW) is critical in determining the melt rate, especially for the Pine Island Glacier (PIG). For example, the basal melt rate of PIG, which decreased by 50% during summer 2012, has been attributed to thickening of WW. Despite the possible importance of WW thickness on ice shelf melting, previous modeling studies in this region have focused primarily on CDW intrusion and have evaluated numerical simulations based on bottom or deep CDW properties. As a result, none of these models have shown a good representation of WW for the AS. In this study, we adjust a small number of model parameters in a regional Amundsen and Bellingshausen Seas configuration of the Massachusetts Institute of Technology general circulation model (MITgcm) to better fit the available observations during the 2007-2010 period. We choose this time period because summer observations during these years show small interannual variability in the eastern AS. As a result of adjustments, our model shows significantly better match with observations than previous modeling studies, especially for WW. Since density of sea water depends largely on salinity at low temperature, this is crucial for assessing the impact of WW on PIG melt rate. In addition, we conduct several sensitivity studies, showing the impact of surface heat loss on the thickness and properties of WW. We also discuss some preliminary results pertaining to further optimization using the adjoint method. Our work is a first step toward improved representation of ice-shelf ocean interactions in the ECCO (Estimating the Circulation and Climate of the Ocean) global ocean retrospective analysis. Moreover, the resolution of our regional domain ( 10 km horizontal grid spacing) is comparable to that of current-generation IPCC (Intergovernmental Panel on Climate Change) global climate models and hence is expected to lead to better representation of these processes in IPCC-class global climate models.

A fjord-glacier coupled system model

NASA Astrophysics Data System (ADS)

de Andrés, Eva; Otero, Jaime; Navarro, Francisco; Prominska, Agnieszka; Lapazaran, Javier; Walczowski, Waldemar

2017-04-01

With the aim of studying the processes occurring at the front of marine-terminating glaciers, we couple a fjord circulation model with a flowline glacier dynamics model, with subglacial discharge and calving, which allows the calculation of submarine melt and its influence on calving processes. For ocean modelling, we use a general circulation model, MITgcm, to simulate water circulation driven by both fjord conditions and subglacial discharge, and for calculating submarine melt rates at the glacier front. To constrain freshwater input to the fjord, we use estimations from European Arctic Reanalysis (EAR). To determine the optimal values for each run period, we perform a sensitivity analysis of the model to subglacial discharge variability, aimed to get the best fit of model results to observed temperature and salinity profiles in the fjord for each of these periods. Then, we establish initial and boundary fjord conditions, which we vary weekly-fortnightly, and calculate the submarine melt rate as a function of depth at the calving front. These data are entered into the glacier-flow model, Elmer/Ice, which has been added a crevasse-depth calving model, to estimate the glacier terminus position at a weekly time resolution. We focus our study on the Hansbreen Glacier-Hansbukta Fjord system, in Southern Spitsbergen, Svalbard, where a large set of data are available for both glacier and fjord. The bathymetry of the entire system has been determined from ground penetrating radar and sonar data. In the fjord we have got temperature and salinity data from CTDs (May to September, 2010-2014) and from a mooring (September to May, 2011-2012). For Hansbreen, we use glacier surface topography data from the SPIRIT DEM, surface mass balance from EAR, centre line glacier velocities from stake measurements (May 2005-April 2011), weekly terminus positions from time-lapse photos (Sept. 2009-Sept. 2011), and sea-ice concentrations from time-lapse photos and Nimbus-7 SMMR and DMSP SSM/I-SSMIS Passive Microwave Data. Results suggest submarine melt rates at Hansbreen terminus implying noticeable changes in the glacier front geometry, and hence the stress field, which favour the occurrence of calving events. In this way, submarine melt at the glacier front could be a first-order mechanism in determining the terminus position in late summer.

Bacterial Communities of Surface Mixed Layer in the Pacific Sector of the Western Arctic Ocean during Sea-Ice Melting

PubMed Central

Ha, Ho Kyung; Kim, Hyun Cheol; Kim, Ok-Sun; Lee, Bang Yong; Cho, Jang-Cheon; Hur, Hor-Gil; Lee, Yoo Kyung

2014-01-01

From July to August 2010, the IBRV ARAON journeyed to the Pacific sector of the Arctic Ocean to monitor bacterial variation in Arctic summer surface-waters, and temperature, salinity, fluorescence, and nutrient concentrations were determined during the ice-melting season. Among the measured physicochemical parameters, we observed a strong negative correlation between temperature and salinity, and consequently hypothesized that the melting ice decreased water salinity. The bacterial community compositions of 15 samples, includicng seawater, sea-ice, and melting pond water, were determined using a pyrosequencing approach and were categorized into three habitats: (1) surface seawater, (2) ice core, and (3) melting pond. Analysis of these samples indicated the presence of local bacterial communities; a deduction that was further corroborated by the discovery of seawater- and ice-specific bacterial phylotypes. In all samples, the Alphaproteobacteria, Flavobacteria, and Gammaproteobacteria taxa composed the majority of the bacterial communities. Among these, Alphaproteobacteria was the most abundant and present in all samples, and its variation differed among the habitats studied. Linear regression analysis suggested that changes in salinity could affect the relative proportion of Alphaproteobacteria in the surface water. In addition, the species-sorting model was applied to evaluate the population dynamics and environmental heterogeneity in the bacterial communities of surface mixed layer in the Arctic Ocean during sea-ice melting. PMID:24497990

Bacterial communities of surface mixed layer in the Pacific sector of the western Arctic Ocean during sea-ice melting.

PubMed

Han, Dukki; Kang, Ilnam; Ha, Ho Kyung; Kim, Hyun Cheol; Kim, Ok-Sun; Lee, Bang Yong; Cho, Jang-Cheon; Hur, Hor-Gil; Lee, Yoo Kyung

2014-01-01

From July to August 2010, the IBRV ARAON journeyed to the Pacific sector of the Arctic Ocean to monitor bacterial variation in Arctic summer surface-waters, and temperature, salinity, fluorescence, and nutrient concentrations were determined during the ice-melting season. Among the measured physicochemical parameters, we observed a strong negative correlation between temperature and salinity, and consequently hypothesized that the melting ice decreased water salinity. The bacterial community compositions of 15 samples, includicng seawater, sea-ice, and melting pond water, were determined using a pyrosequencing approach and were categorized into three habitats: (1) surface seawater, (2) ice core, and (3) melting pond. Analysis of these samples indicated the presence of local bacterial communities; a deduction that was further corroborated by the discovery of seawater- and ice-specific bacterial phylotypes. In all samples, the Alphaproteobacteria, Flavobacteria, and Gammaproteobacteria taxa composed the majority of the bacterial communities. Among these, Alphaproteobacteria was the most abundant and present in all samples, and its variation differed among the habitats studied. Linear regression analysis suggested that changes in salinity could affect the relative proportion of Alphaproteobacteria in the surface water. In addition, the species-sorting model was applied to evaluate the population dynamics and environmental heterogeneity in the bacterial communities of surface mixed layer in the Arctic Ocean during sea-ice melting.

Lactase persistence genotyping on whole blood by loop-mediated isothermal amplification and melting curve analysis.

PubMed

Abildgaard, Anders; Tovbjerg, Sara K; Giltay, Axel; Detemmerman, Liselot; Nissen, Peter H

2018-03-26

The lactase persistence phenotype is controlled by a regulatory enhancer region upstream of the Lactase (LCT) gene. In northern Europe, specifically the -13910C > T variant has been associated with lactase persistence whereas other persistence variants, e.g. -13907C > G and -13915 T > G, have been identified in Africa and the Middle East. The aim of the present study was to compare a previously developed high resolution melting assay (HRM) with a novel method based on loop-mediated isothermal amplification and melting curve analysis (LAMP-MC) with both whole blood and DNA as input material. To evaluate the LAMP-MC method, we used 100 whole blood samples and 93 DNA samples in a two tiered study. First, we studied the ability of the LAMP-MC method to produce specific melting curves for several variants of the LCT enhancer region. Next, we performed a blinded comparison between the LAMP-MC method and our existing HRM method with clinical samples of unknown genotype. The LAMP-MC method produced specific melting curves for the variants at position -13909, -13910, -13913 whereas the -13907C > G and -13915 T > G variants produced indistinguishable melting profiles. The LAMP-MC assay is a simple method for lactase persistence genotyping and compares well with our existing HRM method. Copyright © 2018. Published by Elsevier B.V.

Analysis of Summer 2002 Melt Extent on the Greenland Ice Sheet using MODIS and SSM/I Data

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Williams, Richard S., Jr.; Steffen, Konrad; Chien, Y. L.; Foster, James L.; Robinson, David A.; Riggs, George A.

2004-01-01

Previous work has shown that the summer of 2002 had the greatest area of snow melt extent on the Greenland ice sheet ever recorded using passive-microwave data. In this paper, we compare the 0 degree isotherm derived from the Moderate-Resolution Imaging Spectroradiometer (MODIS) instrument, with Special Sensor Microwave/Imager (SSM/I)-derived melt, at the time of the maximum melt extent in 2002. To validate the MODIS-derived land-surface temperatures (LSTs), we compared the MODIS LSTs with air temperatures from nine stations (using 11 different data points) and found that they agreed to within 2.3 plus or minus 2.09 C, with station temperatures consistently lower than the MODIS LSTs. According to the MODIS LST, the maximum surface melt extended to approximately 2300 m in southern Greenland; while the SSM/I measurements showed that the maximum melt extended to nearly 2700 m in southeastern Greenland. The MODIS and SSM/I data are complementary in providing detailed information about the progression of surface and near-surface melt on the Greenland ice sheet.