Molecular Imaging with Quantum Dots Probing EMT and Prostate Cancer Metastasis in Live Animals

DTIC Science & Technology

2006-10-01

Grignon DJ, Cher ML. Severe combined immunodeficient-humodel of humanprostate cancer metastasis to human bone. Cancer Res 1999;59(8): 1987 – 1993. 14... Eisler , H. J., and Bawendi, M. (2003) Type-II quantum dots: CdTe/CdSe(core/shell) and CdSe/ZinTe(core/shell) heterostructures. J. Am. Chem. Soc. 125...S1044. 39. Cunha GR, Donjacour AA, Cooke PS, et al. The endocrinology and developmen- tal biology of the prostate. Endocr Rev 1987 ; 8:338-362. 40

Cookies for the Real World: Assessing the Potential of RFID for Contractor Monitoring

DTIC Science & Technology

2006-05-30

Business Systems. Litoral Combat Ship (LCS) Civilian Aviation Alternative Support Study: Report of Findings and Recommendation. July 2006. NPS-AM-06...Review of the Framework from 1987-2003." BPP Research Colloquium. 25 November 2003. Copies of the Acquisition Sponsored Research Reports may be printed...mlpqdo^ar^qb=p`elli= Report Documentation Page Form ApprovedOMB No. 0704-0188 Public reporting burden for the collection of information is estimated

Synchronization of IM and HC: The Navy Perspective

DTIC Science & Technology

2010-07-01

grounds for automatic rejection of that weapon system for service use”. In 2003 , MIL-STD-2105C superseded MIL-STD-2105B by referencing the...34 Sandia National Laboratories, January 1987. [11] Tomasello , K., Sharp, M., Adams, J. and Rich Bowen. “Origin of Test Requirements and Passing...stimuli.” Department of Defense Policy • DoDD 5000.01, May 12, 2003 : E1.1.23. Safety. “… All systems containing energetics shall comply with insensitive

Infectious hematopoietic necrosis virus: Monophyletic origin of European isolates from North American Genogroup M

USGS Publications Warehouse

Enzmann, P.-J.; Kurath, G.; Fichtner, D.; Bergmann, S.M.

2005-01-01

Infectious hematopoietic necrosis virus (IHNV) was first detected in Europe in 1987 in France and Italy, and later, in 1992, in Germany. The source of the virus and the route of introduction are unknown. The present study investigates the molecular epidemiology of IHNV outbreaks in Germany since its first introduction. The complete nucleotide sequences of the glycoprotein (G) and non-virion (NV) genes from 9 IHNV isolates from Germany have been determined, and this has allowed the identification of characteristic differences between these isolates. Phylogenetic analysis of partial G gene sequences (mid-G, 303 nucleotides) from North American IHNV isolates (Kurath et al. 2003) has revealed 3 major genogroups, designated U, M and L. Using this gene region with 2 different North American IHNV data sets, it was possible to group the European IHNV strains within the M genogroup, but not in any previously defined subgroup. Analysis of the full length G gene sequences indicated that an independent evolution of IHN viruses had occurred in Europe. IHN viruses in Europe seem to be of a monophyletic origin, again most closely related to North American isolates in the M genogroup. Analysis of the NV gene sequences also showed the European isolates to be monophyletic, but resolution of the 3 genogroups was poor with this gene region. As a result of comparative sequence analyses, several different genotypes have been identified circulating in Europe. ?? Inter-Research 2005.

Analysis of IECC (2003, 2006, 2009) and ASHRAE 90.1-2007 Commercial Energy Code Requirements for Mesa, AZ.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Yunzhi; Gowri, Krishnan

2011-02-28

This report summarizes code requirements and energy savings of commercial buildings in Climate Zone 2B built to the 2009 IECC and ASHRAE Standard 90.1-2007 when compared to the 2003 IECC and the 2006 IECC. In general, the 2009 IECC and ASHRAE Standard 90.1-2007 have higher insulation requirements for exterior walls, roof, and windows and have higher efficiency requirements for HVAC equipment. HVAC equipment efficiency requirements are governed by National Appliance Conversion Act of 1987 (NAECA), and are applicable irrespective of the IECC version adopted. The energy analysis results show that commercial buildings meeting the 2009 IECC requirements save 4.4% tomore » 9.5% site energy and 4.1% to 9.9% energy cost when compared to the 2006 IECC; and save 10.6% to 29.4% site energy and 10.3% to 29.3% energy cost when compared to the 2003 IECC. Similar analysis comparing ASHRAE Standard 90.1-2007 requirements to the 2006 IECC shows that the energy savings are in the 4.0% to 10.7% for multi-family and retail buildings, but less than 2% for office buildings. Further comparison of ASHRAE Standard 90.1-2007 requirements to the 2003 IECC show site energy savings in the range of 7.7% to 30.6% and energy cost savings range from 7.9% to 30.3%. Both the 2009 IECC and ASHRAE Standard 90.1-2007 have the potential to save energy by comparable levels for most building types.« less

Assessing the outstanding 2003 fire events in Portugal with a Regional Climate Model

NASA Astrophysics Data System (ADS)

Trigo, Ricardo; Jerez, Sonia; Camara, Carlos; Montávez, Juan Pedro

2013-04-01

The heatwave that struck western Iberia in the early days of August 2003 was characterized by record high values of both maximum (47.3°C) and minimum (30.6°c) temperatures in Portugal, associated with extremely low humidity levels and relatively intense wind speed (Trigo et al., 2006). These conditions triggered the most devastating sequence of large fires ever registered in Portugal. The estimated total burnt area was about 450.000 ha, including 280.000 ha of forest (Pereira et al., 2011). The outstanding total burnt area value corresponds to roughly 5% of the Portuguese territory, and represents approximately twice the previous maximum observed in 1998 (~220.000 ha), and about four times the long-term average observed between 1980 and 2004. Here we characterise this unusual episode using meteorological fields obtained from both observations and a regional climate model. In this work we use the longest (49-years) high-resolution regional climate simulation available driven by reanalysis data spanning from 1959 to 2007 and covering the entire Iberian Peninsula. This long run was obtained using the MM5 model with a spatial resolution of 10 km. Using this high spatial and temporal resolution we have computed the Canadian Fire Weather Index (FWI) System to produce hourly values of fire risk. The FWI System consists of six components that account for the effects of fuel moisture and wind on fire behaviour (van Wagner, 1987). We show the temporal evolution of high resolution patterns for several fire related variables during the most important days for triggering new fires (the first week of August 2003). Besides the absolute value of Tmax, Tmin, wind (speed and direction), relative humidity and FWI we also evaluate the corresponding anomalies of these fields, obtained after removing the long-term smoothed daily climatology. Pereira M.G., Malamude B.D., Trigo R.M., Alves P.I. (2011) "The History and Characteristics of the 1980-2005 Portuguese Rural Fire Database". Natural Hazards and Earth System Sciences. 11, 3343-3358, doi:10.5194/nhess-11-3343-2011 Trigo R.M., Pereira J.M.C., Pereira M.G., Mota B., Calado M.T., DaCamara C.C., Santo F.E. (2006) "The exceptional fire season of summer 2003 in Portugal". International Journal of Climatology, 26 (13): 1741-1757 NOV 15 2006. Van Wagner, C.E., 1987. Development and structure of the Canadian forest fire weather index system. Canadian Forestry Service, Forest Technical Report 35, Ottawa, 37 pp.

Income-related and educational inequality in small-for-gestational age and preterm birth in Denmark and Finland 1987-2003.

PubMed

Mortensen, Laust H; Lauridsen, Jørgen T; Diderichsen, Finn; Kaplan, George A; Gissler, Mika; Andersen, Anne-Marie N

2010-02-01

In this paper, we examine income- and education-related inequality in small-for-gestational age (SGA) and preterm birth in Denmark and Finland from 1987 to 2003 using concentration indexes (CIXs). From the national medical birth registries we gathered information on all births from 1987 to 2003. Information on highest completed maternal education and household income in the year preceding birth of the offspring was obtained for 1,012,400 births in Denmark and 499,390 in Finland. We then calculated CIXs for income- and education-related inequality in SGA and preterm birth. The mean household income-related inequality in SGA was -0.04 (95% confidence interval: -0.05, -0.04) in Denmark and -0.03 (-0.04, -0.02) in Finland. The maternal education-related inequality in SGA was -0.08 (-0.10, -0.06) in Denmark and -0.07 (-0.08, -0.06) in Finland. The income-related inequality in preterm birth was -0.03 (-0.03, -0.02) in Denmark and -0.03 (-0.04, -0.02) in Finland. The education-related inequality in preterm birth was -0.05 (-0.07, -0.04) in Denmark and -0.04 (-0.05, -0.03) in Finland. In Denmark, the income-related and education-related inequity in SGA increased over time. In Finland, the income-related inequality in SGA birth increased slightly, while education-related inequalities remained stable. Inequalities in preterm birth decreased over time in both countries. Denmark and Finland are examples of nations with free prenatal care and publicly financed obstetric care of high quality. During the period of study there were macroeconomic shocks affecting both countries. However, only small income- and education-related inequalities in SGA and preterm births during the period were observed.

Photoelectron Spectroscopy of CdSe Nanocrystals in the Gas Phase: A Direct Measure of the Evanescent Electron Wave Function of Quantum Dots

DTIC Science & Technology

2013-01-01

11) Kim, S.; Fisher, B.; Eisler , H.-J.; Bawendi, M. J. Am. Chem. Soc. 2003, 125, 11466−11467. (12) Dabbousi, B. O.; Mikulec, F. V; Heine, J. R...Chem. 1982, 2291−2293. (34) Spanhel, L.; Haase, M.; Weller, H.; Henglein, A. J. Am. Chem. Soc. 1987 , 5649−5655. (35) Spanhel, L.; Weller, H...Henglein, A. J. Am. Chem. Soc. 1987 , 6632−6635. (36) Berglund, C. N.; Spicer, W. E. Phys. Rev. 1964, 136, 1030−1044. (37) Liu, P.; Ziemann, P. J.; Kittelson

A nucleotide sequence comparison of coxsackievirus B4 isolates from aquatic samples and clinical specimens.

PubMed Central

Hughes, M. S.; Hoey, E. M.; Coyle, P. V.

1993-01-01

Ten coxsackievirus B4 (CVB4) strains isolated from clinical and environmental sources in Northern Ireland in 1985-7, were compared at the nucleotide sequence level. Dideoxynucleotide sequencing of a polymerase chain reaction (PCR) amplified fragment, spanning the VP1/P2A genomic region, classified the isolates into two distinct groups or genotypes as defined by Rico-Hesse and colleagues for poliovirus type 1. Isolates within each group shared approximately 99% sequence identity at the nucleotide level whereas < or = 86% sequence identity was shared between groups. One isolate derived from a clinical specimen in 1987 was grouped with six CVB4 isolates recovered from the aquatic environment in 1986-7. The second group comprised CVB4 isolates from clinical specimens in 1985-6. Both groups were different at the nucleotide level from the prototype strain isolated in 1950. It was concluded that the method could be used to sub-type CVB4 isolates and would be of value in epidemiological studies of CVB4. Predicted amino acid sequences revealed non-conservation of the tyrosine residue at the VP1/P2A cleavage site but were of little value in distinguishing CVB4 variants. PMID:8386098

The Lake Ontario zooplankton community before (1987-1991) and after (2001-2005) invasion-induced ecosystem change

USGS Publications Warehouse

Stewart, T.J.; Johannsson, O.E.; Holeck, K.; Sprules, W.G.; O'Gorman, R.

2010-01-01

We assessed changes in Lake Ontario zooplankton biomass, production, and community composition before (1987–1991) and after (2001–2005) invasion-induced ecosystem changes. The ecosystem changes were associated with establishment of invasive dreissenid mussels and invasive predatory cladocerans (Bythotrephes and Cercopagis). Whole-lake total epilimnetic plus metalimnetic zooplankton production declined by approximately half from 42.45 (g dry wt∙m−2∙ year−1) during 1987–1991 to 21.91 (g dry wt∙m−2∙ year−1) in 2003 and averaged 21.01 (g dry wt∙m−2∙ year−1) during 2001–2005. Analysis of two independent data sets indicates that the mean biomass and biomass proportion of cyclopoid copepods declined while the same measures increased for the invasive predatory cladocerans. Changes in means and proportions of all other zooplankton groups were not consistent between the data sets. Cyclopoid copepod biomass and production declined by factors ranging from 3.6 to 5.7. Invasive predatory cladoceran biomass averaged from 5.0% to 8.0% of the total zooplankton biomass. The zooplankton community was otherwise resilient to the invasion-induced disruption as zooplankton species richness and diversity were unaffected. Zooplankton production was likely reduced by declines in primary productivity but may have declined further due to increased predation by alewives and invasive predatory cladocerans. Shifts in zooplankton community structure were consistent with increased predation pressure on cyclopoid copepods by alewives and invasive predatory cladocerans. Predicted declines in the proportion of small cladocerans were not evident. This study represents the first direct comparison of changes in Lake Ontario zooplankton production before and after the invasion-induced disruption and will be important to food web-scale investigations of invasion effects.

Evolution of the High Velocity X-Ray Emission in SN 1987A

NASA Astrophysics Data System (ADS)

Dewey, Daniel; Haberl, F.; Dwarkadas, V. V.; Burrows, D. N.; Park, S.

2011-01-01

Chandra HETG observations of SN 1987A in late 1999 showed very broad lines with observed FWHM of order 7000 km/s (Michael et al. 2002). At this time (SN day 4600) the blastwave was already interacting with the HII region around the progenitor and optical spots had recently appeared. High-resolution spectra taken from May 2003 ( day 5900) to the present by XMM-Newton and Chandra have been well fit by models with FWHM less than 2000 km/s (Zhekov et al. 2005; Dewey et al. 2008; Sturm et al 2010). The emission is increasingly dominated by these narrower components as the blastwave encounters more of the dense equatorial ring. However emission from the HII region out of the ring plane is still expected at late times and would contribute a high-velocity component to the spectra. We analyze 6 epochs of SN 1987A grating data and include an additional very broad component in the spectral model. We find that deep HETG 2007 data are better fit when one quarter of the flux comes from a component with FWHM 8500 km/s, and that RGS 2003 data show an improved fit with a very-broad fraction that is between the 1999 and 2007 values. Later data continue a progression to lower, but still significant, very-broad fractions. The measurements are discussed in terms of the density and extent of the out-of-plane HII region, hydrodynamical simulations, and 3D models of SN 1987A's emission. Support for this work was provided by NASA/USA through contract NAS8-03060 to the Smithsonian Astrophysical Observatory (SAO) and further SAO sub-contracts TM9-0004X to VVD (U Chicago) and SV3-73016 to MIT for support of the CXC.

The Daily Text: Increasing Parental Involvement in Education with Mobile Text Messaging

ERIC Educational Resources Information Center

Pakter, Alexander; Chen, Li-Ling

2013-01-01

Numerous educational researches have showed that parental involvement in schools is highly correlated with higher student performance (Griffith, 1996; Jeynes, 2005, 2012; Sheldon, 2003; Stevenson & Baker, 1987; Williams, & Sanches, 2012). The research results are so evident that schools are now required by law to implement parental…

Female Students and Achievement in Secondary School Mathematics

ERIC Educational Resources Information Center

Shildneck, Barry P., IV

2009-01-01

Achievement and the experiences of women in secondary school mathematics have been well documented in the research literature (e.g., Benbow & Stanley, 1980, 1983; Tartre & Fennema, 1995; Sherman, 1982; Ryckman & Peckham, 1987; Keller & Dauenheimer, 2003). With respect to achievement, the research literature primarily focuses on how women are…

The Remarkable 2003-2004 Winter and Other Recent Warm Winters in the Arctic Stratosphere Since the Late 1990s

NASA Technical Reports Server (NTRS)

Manney, Gloria L.; Krueger, Kirstin; Sabutis, Joseph L.; Sena, Sara Amina; Pawson, Steven

2004-01-01

The 2003-2004 Arctic winter was remarkable in the 40-year record of meteorological analyses. A major warming beginning in early January 2004 led to nearly two months of vortex disruption with high-latitude easterlies in the middle to lower stratosphere. The upper stratospheric vortex broke up in late December, but began to recover by early January, and in February and March was the strongest since regular observations began in 1979. The lower stratospheric vortex broke up in late January. Comparison with two previous years, 1984-1985 and 1986-1987, with prolonged mid-winter warming periods shows unique characteristics of the 2003-2004 warming period: The length of the vortex disruption, the strong and rapid recovery in the upper stratosphere, and the slow progression of the warming from upper to lower stratosphere. January 2004 zonal mean winds in the middle and lower stratosphere were over two standard deviations below average. Examination of past variability shows that the recent frequency of major stratospheric warmings (seven in the past six years) is unprecedented. Lower stratospheric temperatures were unusually high during six of the past seven years, with five having much lower than usual potential for PSC formation and ozone loss (nearly none in 1998-1999, 2001-2002 and 2003-2004, and very little in 1997-1998 and 2000-2001). Middle and upper stratospheric temperatures, however, were unusually low during and after February. The pattern of five of the last seven years with very low PSC potential would be expected to occur randomly once every approximately 850 years. This cluster of warm winters, immediately following a period of unusually cold winters, may have important implications for possible changes in interannual variability and for determination and attribution of trends in stratospheric temperatures and ozone.

The Remarkable 2003--2004 Winter and Other Recent Warm Winters in the Arctic Stratosphere Since the Late 1990s

NASA Technical Reports Server (NTRS)

Manney, Gloria L.; Kruger, Kirstin; Sabutis, Joseph L.; Sena, Sara Amina; Pawson, Steven

2005-01-01

The 2003-2004 Arctic winter was remarkable in the approximately 50-year record of meteorological analyses. A major warming beginning in early January 2004 led to nearly 2 months of vortex disruption with high-latitude easterlies in the middle to lower stratosphere. The upper stratospheric vortex broke up in late December, but began to recover by early January, and in February and March was the strongest since regular observations began in 1979. The lower stratospheric vortex broke up in late January. Comparison with 2 previous years, 1984-1985 and 1986-1987, with prolonged midwinter warming periods shows unique characteristics of the 2003-2004 warming period: The length of the vortex disruption, the strong and rapid recovery in the upper stratosphere, and the slow progression of the warming from upper to lower stratosphere. January 2004 zonal mean winds in the middle and lower stratosphere were over 2 standard deviations below average. Examination of past variability shows that the recent frequency of major stratospheric warmings (7 in the past 6 years) is unprecedented. Lower stratospheric temperatures were unusually high during 6 of the past 7 years, with 5 having much lower than usual potential for polar stratospheric cloud (PSC) formation and ozone loss (nearly none in 1998-1999, 2001-2002, and 2003-2004, and very little in 1997-1998 and 2000-2001). Middle and upper stratospheric temperatures, however, were unusually low during and after February. The pattern of 5 of the last 7 years with very low PSC potential would be expected to occur randomly once every 850 years. This cluster of warm winters, immediately following a period of unusually cold winters, may have important implications for possible changes in interannual variability and for determination and attribution of trends in stratospheric temperatures and ozone.

7 CFR 82.5 - General requirements.

Code of Federal Regulations, 2010 CFR

2010-01-01

... program, the trees to be removed must be fruit-bearing and have been planted after the 1987 and before the 2003 calendar years. Abandoned orchards and dead trees will not qualify. The block of trees for removal must be easily definable by separations from other blocks of eligible trees and contain at least 1,000...

Physical Health Effects of Intimate Partner Abuse

ERIC Educational Resources Information Center

Sillito, Carrie LeFevre

2012-01-01

Although intimate partner violence has been recognized as both a social problem and health issue, the extent to which it is a health issue for both males and females in the general population is largely unknown. This longitudinal research uses data from the National Survey of Family and Households (1987-2003). Random effects logistic regression…

E-Texts in the Classroom

ERIC Educational Resources Information Center

Hannon, Charles

2008-01-01

A May 2007 Congressional advisory committee found that average full-time undergraduates spent between $700 and $1,000 on textbooks in 2003-2004 and that from 1987-2004, textbook prices at four-year public colleges rose 109 percent compared to a rise in the Consumer Price Index of 65 percent. Higher education is transitioning from atoms…

Effect of Heat Acclimation on Sweat Minerals

DTIC Science & Technology

2007-12-01

training on the trace metals chromium, zinc, and copper. Sports Med. 1987;4:9–18. 6. Chinevere TD , McClung JP, Cheuvront SN. Trace mineral losses in sweat...versus patch tests for estimating body surface electrolyte losses. Int J Sports Nutr Exerc Metab. 2003;13:479–88. 33. Robert MF, Wenger CB, Stolwijk JAJ

Language and Nutrition (Mis)Information: Food Labels, FDA Policies and Meaning

ERIC Educational Resources Information Center

Taylor, Christy Marie

2013-01-01

In this dissertation, I address the ways in which food manufacturers can exploit the often vague and ambiguous nature of FDA policies concerning language and images used on food labels. Employing qualitative analysis methods (Strauss, 1987; Denzin and Lincoln, 2003; Mackey and Gass, 2005) that drew upon critical discourse analysis (Fairclough,…

77 FR 11401 - Marine Sanitation Devices (MSDs): No Discharge Zone (NDZ) for California State Marine Waters

Federal Register 2010, 2011, 2012, 2013, 2014

2012-02-27

... Plastic Pollution Research and Control Act of 1987, and the Ocean Dumping Act, address pollution within... related legislation in 2003-2005 to limit pollution from large passenger and large oceangoing vessels. In...; (3) to further regulate landside sources of pollution; (4) to improve inspection and testing...

7 CFR 82.5 - General requirements.

Code of Federal Regulations, 2013 CFR

2013-01-01

... program, the trees to be removed must be fruit-bearing and have been planted after the 1987 and before the 2003 calendar years. Abandoned orchards and dead trees will not qualify. The block of trees for removal must be easily definable by separations from other blocks of eligible trees and contain at least 1,000...

7 CFR 82.5 - General requirements.

Code of Federal Regulations, 2012 CFR

2012-01-01

... program, the trees to be removed must be fruit-bearing and have been planted after the 1987 and before the 2003 calendar years. Abandoned orchards and dead trees will not qualify. The block of trees for removal must be easily definable by separations from other blocks of eligible trees and contain at least 1,000...

7 CFR 82.5 - General requirements.

Code of Federal Regulations, 2011 CFR

2011-01-01

... program, the trees to be removed must be fruit-bearing and have been planted after the 1987 and before the 2003 calendar years. Abandoned orchards and dead trees will not qualify. The block of trees for removal must be easily definable by separations from other blocks of eligible trees and contain at least 1,000...

7 CFR 82.5 - General requirements.

Code of Federal Regulations, 2014 CFR

2014-01-01

... program, the trees to be removed must be fruit-bearing and have been planted after the 1987 and before the 2003 calendar years. Abandoned orchards and dead trees will not qualify. The block of trees for removal must be easily definable by separations from other blocks of eligible trees and contain at least 1,000...

Poetry Connections Can Enhance Content Area Learning

ERIC Educational Resources Information Center

Kane, Sharon; Rule, Audrey C.

2004-01-01

There is a convincing literature base showing that teachers in a variety of content areas at all levels have used poetry for many years to enrich their curricula and assist in the learning of concepts, procedures, theories, and terms (e.g., Dexter, 1988; Ginocchio & Frederick, 1987; Kane, 1998, 2003; Robertson, 1997; Rodgers & Zolbrod, 1986;…

Opportunities to Practice What Is Locally Valued: An Ecocultural Perspective on Quality in Family Child Care Homes

ERIC Educational Resources Information Center

Tonyan, Holli A.

2017-01-01

Research Findings: Drawing from cultural approaches to human development (Rogoff, 2003; Weisner, 2002, 2005) and cognition (Quinn & Holland, 1987), this article presents a working model and theory of change for quality in family child care by defining quality as the alignment of children's opportunities for learning and development with…

Chernobyl fallout in the uppermost (0-3 cm) humus layer of forest soil in Finland, North East Russia and the Baltic countries in 2000--2003.

PubMed

Ylipieti, J; Rissanen, K; Kostiainen, E; Salminen, R; Tomilina, O; Täht, K; Gilucis, A; Gregorauskiene, V

2008-12-15

The situation resulting from the Chernobyl fallout in 1987 was compared to that in 2000--2001 in Finland and NW Russia and that in 2003 in the Baltic countries. 786 humus (0-3 cm layer) samples were collected during 2000--2001 in the Barents Ecogeochemistry Project, and 177 samples in the Baltic countries in 2003. Nuclides emitting gamma-radiation in the 0-3 cm humus layer were measured by the Radiation and Nuclear Safety Authority-STUK in Finland. In 1987 the project area was classified by the European Commission into four different fallout classes. 137Cs inventory Bg/m2 levels measured in 2000--2003 were compared to the EU's class ranges. Fitting over the whole project area was implemented by generalizing the results for samples from the Baltic countries, for which Bq/m2 inventories could be calculated. A rough estimation was made by comparing the mass of organic matter and humus with 137Cs concentrations in these two areas. Changes in 137Cs concentration levels are illustrated in both thematic maps and tables. Radionuclide 137Cs concentrations (Bq/kg d.w.) were detected in the humus layer at all the 988 sampling sites. 134Cs was still present in 198 sites 15 years after the nuclear accident in Chernobyl. No other anthropogenic nuclides emitting gamma-radiation were detected, but low levels of 60Co, 125Sb and 154Eu isotopes were found in 14 sites. Fifteen years after the Chernobyl accident, the radioactive nuclide 137Cs was and still is the most significant fallout radionuclide in the environment and in food chains. The results show that the fallout can still be detected in the uppermost humus layer in North East Europe.

Status and Trends of Sea Otter Populations in Southeast Alaska, 1969-2003

USGS Publications Warehouse

Esslinger, George G.; Bodkin, James L.

2009-01-01

Aerial surveys of all known sea otter (Enhydra lutris) habitat in Southeast Alaska (SE AK) in 2002-2003 indicated a population size of 8,949 otters [Standard Error (SE) = 899] at an average density of 0.92 otters per square kilometer. These findings on sea otter distribution and abundance were compared to results from several previous surveys. Sea otters have expanded their range beyond the outer coast of SE AK and currently occupy inside waters such as Glacier Bay and Sumner Strait. This range expansion, along with archeological evidence, supports the hypothesis that sea otters are capable of colonizing inside waters in SE AK. Inside Glacier Bay National Park and Preserve, in northern SE AK, sea otter abundance has increased from 5 in 1995 to 1,266 (SE = 196) in 2002, more than doubling on an average annual basis, indicating immigration and reproduction as factors contributing to population growth. In the remainder of northern SE AK, the estimated abundance has declined from 2,295 in 1987 to 1,838 (SE = 307) in 2002. In southern SE AK, the abundance of sea otters increased from 2,167 in 1988 to 5,845 (SE = 821) in 2003. Overall, population growth rates for sea otters in SE AK between 1987 and 2003 are much lower than rates from previous studies and were unexpected given the amount of unoccupied habitat available in SE AK. Divergent population trajectories were evident between the southern (6.6 percent per year) and northern areas of SE AK (2.0 percent per year). These differences suggest variation in reproductive or survival rates between the areas. Harvest levels between 1989 and 2003 may have had a measurable effect on sea otter populations in SE AK. Available data on age and sex specific fecundity and survival rates could be used to develop age- and sex-structured population matrix models to help guide management and conservation of sea otter populations.

Health transition and immigration: a new challenge for Public Health.

PubMed

Di Nicola, A; Geraci, S

2015-01-01

Immigration has been one of the most relevant phenomena characterizing Italy's social history of the past 30 years. Currently, there are almost 5 million non-Italian citizens in Italy, representing about 8.2% of the country's population. At the beginning of the 80s, a small health clinic, set-up by a no-profit Catholic organization called Caritas, was thus opened in Rome - managed by medical doctors and volunteer workers - aimed at providing the new migrants (often without any social rights) the sanitary support that was unavailable or difficult to find. In time, this health clinic progressively became an observatory of migrants' general health conditions, with a particular focus on the part of this population found in marginal social and legal conditions (without a residence permit). Data recorded in Roman Caritas Health Clinic database, belonging to patient admitted to the medical centre for the first time in 1986-1987, 2003-2004 and 2013-2014, were selected and compared. Only patients from Africa, Asia, Central and Eastern Europe and Central and Southern America were included. In addition to vital statistics, both diagnosis and prescriptions are filed according to the ICD-9.CM, 1997 in the database. Only codes 001 to 999 have been taken into consideration. The resulting sample is composed of 10741 patients. Of these, 3602 relate to 1986-1987, 4341 to 2003-2004 and 2798 to 2013-2014. The total diagnostical data processed was of 12662 (2777 in 1986-1987, 5704 in 2003-2004, 4181 in 2013-2014). Over the last 30 years the most significant variable for the public health scenario is the progressively ageing population, a variable that does not occur homogeneously. Starting from 2003-2004 an upward trend for non-communicable diseases was observed, that, as suggested by this study, have patterns and determinants varying according to ethnicity. The progressive modification of the socio-demographic profile of the migrant population determined the health transition already seen in the local population. It has also presented itself among foreigners due to the increase in their average age, as well as their provenance from countries with high risk of certain metabolic pathologies, and the acquisition of inadequate lifestyles and eating habits. This epidemiologic shift has had necessary implications on the organization of services and on the activation of eventual specific courses of action.

Host switch during evolution of a genetically distinct hantavirus in the American shrew mole (Neurotrichus gibbsii)

PubMed Central

Kang, Hae Ji; Bennett, Shannon N.; Dizney, Laurie; Sumibcay, Laarni; Arai, Satoru; Ruedas, Luis A.; Song, Jin-Won; Yanagihara, Richard

2009-01-01

A genetically distinct hantavirus, designated Oxbow virus (OXBV), was detected in tissues of an American shrew mole (Neurotrichus gibbsii), captured in Gresham, Oregon, in September 2003. Pairwise analysis of full-length S- and M- and partial L-segment nucleotide and amino acid sequences of OXBV indicated low sequence similarity with rodent-borne hantaviruses. Phylogenetic analyses using maximum-likelihood and Bayesian methods, and host-parasite evolutionary comparisons, showed that OXBV and Asama virus, a hantavirus recently identified from the Japanese shrew mole (Urotrichus talpoides), were related to soricine shrew-borne hantaviruses from North America and Eurasia, respectively, suggesting parallel evolution associated with cross-species transmission. PMID:19394994

Commissioner's Report to the Education Committees of the Senate and General Assembly on Violence and Vandalism in the Public Schools of New Jersey for the Period July 1, 1987 to June 30, 1988.

ERIC Educational Resources Information Center

New Jersey State Dept. of Education, Trenton.

A 1983 New Jersey law requires the commissioner of education to monitor the incidence of violence, vandalism, and substance abuse in the state's public schools. This report summarizes the incident reports for the 1987-88 school year and makes comparisons with prior years (1984-1987). The data collected identify neither causes nor specifics as to…

Public Secondary School Dropouts in Pennsylvania 2003-04. Report to the General Assembly

ERIC Educational Resources Information Center

Hruska, Richard A., Comp.

2005-01-01

Act 49 of 1987 requires the Secretary of Education to provide the General Assembly with an annual report on public school dropouts in Pennsylvania. The purpose of this report is to document the actual number of students who drop out each year and to provide various characteristics about these students. The type of data collected about each dropout…

Molecular Imaging With Quantum Dots Probing EMT and Prostate Cancer Metastasis in Live Animals

DTIC Science & Technology

2007-10-01

of humanprostate cancer metastasis to human bone. Cancer Res 1999;59(8): 1987 – 1993. 14. Navone NM, Olive M, Ozen M, Davis R, Troncoso P, Tu SM...changing the particle size. J. Am. Chem. Soc. 125, 7100–7106. 27. Kim, S., Fisher, B., Eisler , H. J., and Bawendi, M. (2003) Type-II quantum dots

Daylight saving time transitions and hospital treatments due to accidents or manic episodes

PubMed Central

Lahti, Tuuli A; Haukka, Jari; Lönnqvist, Jouko; Partonen, Timo

2008-01-01

Background Daylight saving time affects millions of people annually but its impacts are still widely unknown. Sleep deprivation and the change of circadian rhythm can trigger mental illness and cause higher accident rates. Transitions into and out of daylight saving time changes the circadian rhythm and may cause sleep deprivation. Thus it seems plausible that the prevalence of accidents and/or manic episodes may be higher after transition into and out of daylight saving time. The aim of this study was to explore the effects of transitions into and out of daylight saving time on the incidence of accidents and manic episodes in the Finnish population during the years of 1987 to 2003. Methods The nationwide data were derived from the Finnish Hospital Discharge Register. From the register we obtained the information about the hospital-treated accidents and manic episodes during two weeks before and two weeks after the transitions in 1987–2003. Results The results were negative, as the transitions into or out of daylight saving time had no significant effect on the incidence of accidents or manic episodes. Conclusion One-hour transitions do not increase the incidence of manic episodes or accidents which require hospital treatment. PMID:18302734

Hydroclimatic changes of Lake Bosten in Northwest China during the last decades.

PubMed

Yao, Junqiang; Chen, Yaning; Zhao, Yong; Yu, Xiaojing

2018-06-14

Bosten Lake, the largest inland freshwater lake in China, has experienced drastic change over the past five decades. Based on the lake water balance model and climate elasticity method, we identify annual changes in the lake's water components during 1961-2016 and investigate its water balance. We find a complex pattern in the lake's water: a decrease (1961-1987), a rapid increase (1988-2002), a drastic decrease (2003-2012), and a recent drastic increase (2013-2016). We also estimated the lake's water balance, finding that the drastic changes are caused by a climate-driven regime shift coupled with human disturbance. The changes in the lake accelerated after 1987, which may have been driven by regional climate wetting. During 2003 to 2012, implementation of the ecological water conveyance project (EWCP) significantly increased the lake's outflow, while a decreased precipitation led to an increased drought frequency. The glacier retreating trend accelerated by warming, and caused large variations in the observed lake's changes in recent years. Furthermore, wastewater emissions may give rise to water degradation, human activity is completely changing the natural water cycle system in the Bosten Lake. Indeed, the future of Bosten Lake is largely dependent on mankind.

Off-platform Silurian sequences in the Ambler River quadrangle: A section in Geologic studies in Alaska by the U.S. Geological Survey during 1987

USGS Publications Warehouse

Dumoulin, Julie A.; Harris, Anita G.

1988-01-01

Lithofacies changes in coeval upper Paleozoic rocks have been used to unravel the tectonic history of northern Alaska (for example, Mayfield and others, 1983). Conodont biostratigraphy and detailed petrologic studies are now revealing facies differences in lower Paleozoic rocks that can also be used to constrain their tectono-sedimentary framework (Dumoulin and Harris, 1987). A basic element of basin analysis is the discrimination of shallow-water shelf and platform sequences from deeper water slope and basinal deposits. This report documents several new localities of deeper water, off-platform Silurian deposits in the Ambler River quadrangle and briefly outlines some of their paleogeographic implications.

A Curvilinear Version of a Quasi-3D Nearshore Circulation Model

DTIC Science & Technology

2002-01-01

Warsi, 1998), in comparison to the Cartesian component method (see, for example, Häuser et al., 1985, 1986; Raghunath et al., 1987; Borthwick and Barber...1999. Three-dimensional dispersion of momentum in wave-induced nearshore currents. Eur. J. Mech., 83–101. Raghunath , R., Sengupta, S., Häuser, J., 1987

Adolescent's perceptions and expectations of parental action on children's smoking and snus use; national cross sectional data from three decades.

PubMed

Nilsson, Maria; Weinehall, Lars; Bergström, Erik; Stenlund, Hans; Janlert, Urban

2009-03-04

Parents play a vital role as children develop tobacco behaviours. Many parents feel unsure about their possibility to influence their teenager's lifestyle. Knowledge about young people's acceptance for parental intervention could increase parental involvement. The overall objective of this study was to explore adolescents' perceptions and expectations of parental action regarding children's smoking and snus use, and whether they have changed over time. To see if there were differences whether the adolescent was a tobacco user or not the adolescents' tobacco use was followed; and described to put the findings on their perceptions and expectations of parental action in a context. The study used a repeated cross-sectional design, reporting Swedish national data from three decades. Data were collected in 1987, 1994 and 2003 by a questionnaire mailed to homes, in total to 13500 persons. The annual samples, which were random and national representative, consisted of 4500 young people aged 13, 15 and 17 yr, 1500 individuals per age group. The sampling and data collection procedures were done the same way during each survey. Chi2- tests were used to evaluate differences in distributions. Adolescents in all age groups became more positive toward parental action over time. In 2003, more then 86% of the adolescents, including both smokers and non-smokers, strongly supported parental action on their children's smoking by trying to persuade them not to smoke (94%), by not smoking themselves (87%) and by not allowing their children to smoke at home (86%). Both non-smokers and smokers supported the idea of parental action in a similar way. Reduced pocket money had a weak support (42%), especially from girls. Eighty-nine percent of the adolescents expected their parents to act against smoking and 85% against snus use.Smoking was stable at 8% in 1987 and 1994 but decreased to 4% in 2003. In 1987 the snus use prevalence was 4% and in 2003 it was 3%. Snus users were mostly boys while few girls had done more than tried snus. More young people in all age groups had never tried smoking compared to the previous studies. In 2003 57% stated that they had never tried smoking. Adolescent smoking in Sweden has decreased and the proportion who never tried smoking has increased. The results of this study show that a growing majority of adolescents support strong parental intervention to help them refrain from tobacco, but preferably not in a punitive manner. This finding dismisses the notion that adolescents ignore or even disdain parental practices concerning tobacco. Prevention strategies and interventions addressing adolescent tobacco use that involve parents can be improved by using these findings to encourage parents to intervene against their children's tobacco use.

Genetic characterization of a Coxsackie A9 virus associated with aseptic meningitis in Alberta, Canada in 2010

PubMed Central

2013-01-01

Background An unusually high incidence of aseptic meningitis caused by enteroviruses was noted in Alberta, Canada between March and October 2010. Sequence based typing was performed on the enterovirus positive samples to gain a better understanding of the molecular characteristics of the Coxsackie A9 (CVA-9) strain responsible for most cases in this outbreak. Methods Molecular typing was performed by amplification and sequencing of the VP2 region. The genomic sequence of one of the 2010 outbreak isolates was compared to a CVA-9 isolate from 2003 and the prototype sequence to study genetic drift and recombination. Results Of the 4323 samples tested, 213 were positive for enteroviruses (4.93%). The majority of the positives were detected in CSF samples (n = 157, 73.71%) and 81.94% of the sequenced isolates were typed as CVA-9. The sequenced CVA-9 positives were predominantly (94.16%) detected in patients ranging in age from 15 to 29 years and the peak months for detection were between March and October. Full genome sequence comparisons revealed that the CVA-9 viruses isolated in Alberta in 2003 and 2010 were highly homologous to the prototype CVA-9 in the structural VP1, VP2 and VP3 regions but divergent in the VP4, non-structural and non-coding regions. Conclusion The increase in cases of aseptic meningitis was associated with enterovirus CVA-9. Sequence divergence between the prototype strain of CVA-9 and the Alberta isolates suggests genetic drifting and/or recombination events, however the sequence was conserved in the antigenic regions determined by the VP1, VP2 and VP3 genes. These results suggest that the increase in CVA-9 cases likely did not result from the emergence of a radically different immune escape mutant. PMID:23521862

Building Community Power for Better Schools: An Evaluation of the Parent and Youth Education Policy Collaborative, 2001-2003

ERIC Educational Resources Information Center

Keleher, Terry; Morita, Josina

2004-01-01

School reform in Chicago, the third largest school district in the country, has been a major public concern for decades. In the 1970s and 1980s, the Chicago Public Schools (CPS) suffered through financial crises, a bloated bureaucracy, and repeated teacher strikes, as academic achievement plummeted and dropout rates soared. In 1987, U.S. Secretary…

Fighting Corruption in Mexico: Lessons from Colombia

DTIC Science & Technology

2011-06-01

combat the growing threat. The strategy presented by President Alvaro Uribe in 2003, albeit not perfect, made important strides towards the reform...Edivision Compania Editorial, 1987), 119–120; Andres Lopez- Restrepo and Alvaro Camacho-Guizado, ―From Smugglers to Drug-Lords to ‗Traquetos...of President Uribe in 2002, the GOC viewed the security threat posed by drug trafficking organizations, the FARC and the paramilitaries, as a

Total pelvic exenteration: the Albert Einstein College of Medicine/Montefiore Medical Center Experience (1987 to 2003).

PubMed

Goldberg, Gary L; Sukumvanich, Paniti; Einstein, Mark H; Smith, Harriet O; Anderson, Patrick S; Fields, Abbie L

2006-05-01

To review the trends, modifications and results of 103 consecutive total pelvic exenterations (TPE) performed at the Montefiore Medical Center and Albert Einstein College of Medicine from 1987 to 2003. All patients who underwent TPE from January 1987 to December 2003 were included. The medical record, complications, follow-up, clinical status and demographic information were entered in a database. The procedure performed, the method of urinary diversion, colonic diversion, pelvic floor support and vaginal reconstruction were documented. Surviving patients were surveyed regarding their satisfaction with the urinary diversion, the vaginal reconstruction and their sexual function since the surgery. 103 pts were identified. Indications for TPE were recurrent cancers of the cervix (95), endometrium (2), colon and rectum (5), vulva (1). Overall 5-year survival was 47%. 5-year survival for pts with recurrent cervix cancer was 48%. Six pts (6%) recurred >5 years after the TPE. 14 pts (14%) had ureteral anastomotic leaks (no difference between ileal conduit 9/65 (14%) versus 5/38 (13%) continent conduit (P = 0.92). 34 pts (89%) with continent conduits were "continent." 14 pts (17%) had wound complications. 4 pts (4%) had parastomal hernias. 5/11 (46%) pts who had a low rectal reanastomosis developed recurrence in the pelvis. 21/39 (54%) of pts with continent conduits would choose an ileal conduit if they had the option again. Long-term renal function was similar in pts with ileal and continent conduits. Mesh of any type for pelvic floor reconstruction is associated with infection and bowel/urinary fistulas. VRAM flaps for neovagina fill the pelvic dead space, reduce the risk of fistulas and 20/36 pts (55%) are sexually active. Our overall 5-year survival is encouraging, and modifications in surgical technique have improved the reconstructive phase. Low rectal anastomoses at TPE adversely affects survival. Many of our pts with continent urinary diversions would not choose this method again. Mesh of any type is associated with sepsis and bowel/urinary fistulas. VRAM for neovagina reduces fistula rate and are functional in >55% of pts. TPE remains a potentially curative option for these pts.

Distribution and stability of eelgrass beds at Izembek Lagoon, Alaska

USGS Publications Warehouse

Ward, David H.; Markon, Carl J.; Douglas, David C.

1997-01-01

Spatial change in eelgrass meadows, Zostera marina L., was assessed between 1978 and 1987 and between 1987 and 1995 at Izembek Lagoon, Alaska. Change in total extent was evaluated through a map to map comparison of data interpreted from a 1978 Landsat multi-spectral scanner image and 1987 black and white aerial photographs. A ground survey in 1995 was used to assess spatial change from 1987. Eelgrass beds were the predominant vegetation type in the lagoon, comprising 44-47% (15000-16000 ha) of the total area in 1978 and 1987. Izembek Lagoon contains the largest bed of seagrass along the Pacific Coast of North America and largest known single stand of eelgrass in the world. There was a high degree of overlap in the spatial distribution of eelgrass among years of change detection. The overall net change was a 6% gain between, 1978 and 1987 and a <1% gain between 1987 and 1995. The lack of significant change in eelgrass cover suggests that eelgrass meadows in Izembek Lagoon have been stable during the 17-year period of our study.

Molecular cloning of a cDNA encoding the glycoprotein of hen oviduct microsomal signal peptidase.

PubMed Central

Newsome, A L; McLean, J W; Lively, M O

1992-01-01

Detergent-solubilized hen oviduct signal peptidase has been characterized previously as an apparent complex of a 19 kDa protein and a 23 kDa glycoprotein (GP23) [Baker & Lively (1987) Biochemistry 26, 8561-8567]. A cDNA clone encoding GP23 from a chicken oviduct lambda gt11 cDNA library has now been characterized. The cDNA encodes a protein of 180 amino acid residues with a single site for asparagine-linked glycosylation that has been directly identified by amino acid sequence analysis of a tryptic-digest peptide containing the glycosylated site. Immunoblot analysis reveals cross-reactivity with a dog pancreas protein. Comparison of the deduced amino acid sequence of GP23 with the 22/23 kDa glycoprotein of dog microsomal signal peptidase [Shelness, Kanwar & Blobel (1988) J. Biol. Chem. 263, 17063-17070], one of five proteins associated with this enzyme, reveals that the amino acid sequences are 90% identical. Thus the signal peptidase glycoprotein is as highly conserved as the sequences of cytochromes c and b from these same species and is likely to be found in a similar form in many, if not all, vertebrate species. The data also show conclusively that the dog and avian signal peptidases have at least one protein subunit in common. Images Fig. 1. PMID:1546959

The CCD photometry of the globular cluster Palomar 1.

NASA Astrophysics Data System (ADS)

Borissova, J.; Spassova, N.

1995-04-01

A CCD photometry of the halo cluster Palomar 1 is presented in the Thuan-Gunn photometric system. The principal sequences of the color-magnitude diagrams are delineated in different spectral bands. The color-magnitude diagrams of the cluster show a well defined red horizontal branch, a subgiant branch and a main-sequence down to about two magnitudes below the main sequence turnoff. The giant branch is absent and the brightest stars are the horizontal branch stars. The age of the cluster determined by comparison with the isochrones of Bell & Vanden Berg (1987) is consistent with an age in the interval 12-14Gyr. A distance modulus of (m-M)_g0_=15.38+/-0.15 magnitude and E(g-r)=0.16 has been derived. An estimate of the cluster structural parameters such as core radius and concentration parameter gives r_c_=1.5pc and c=1.46. A mass estimate of 1.1 10^3^Msun_ and a mass-to-light ratio of 1.79 have been obtained using King's (1966) method. The morphology of color-magnitude diagrams allows Pal 1 to be interpreted as probably a globular cluster rather than an old open one.

Crustal deformation of the Yellowstone-Snake River Plain volcano-tectonic system-Campaign and continuous GPS observations, 1987-2004

USGS Publications Warehouse

Puskas, C.M.; Smith, R.B.; Meertens, Charles M.; Chang, W. L.

2007-01-01

The Yellowstone-Snake River Plain tectonomagmatic province resulted from Late Tertiary volcanism in western North America, producing three large, caldera-forming eruptions at the Yellowstone Plateau in the last 2 Myr. To understand the kinematics and geodynamics of this volcanic system, the University of Utah conducted seven GPS campaigns at 140 sites between 1987 and 2003 and installed a network of 15 permanent stations. GPS deployments focused on the Yellowstone caldera, the Hebgen Lake and Teton faults, and the eastern Snake River Plain. The GPS data revealed periods of uplift and subsidence of the Yellowstone caldera at rates up to 15 mm/yr. From 1987 to 1995, the caldera subsided and contracted, implying volume loss. From 1995 to 2000, deformation shifted to inflation and extension northwest of the caldera. From 2000 to 2003, uplift continued to the northwest while caldera subsidence was renewed. The GPS observations also revealed extension across the Hebgen Lake fault and fault-normal contraction across the Teton fault. Deformation rates of the Yellowstone caldera and Hebgen Lake fault were converted to equivalent total moment rates, which exceeded historic seismic moment release and late Quaternary fault slip-derived moment release by an order of magnitude. The Yellowstone caldera deformation trends were superimposed on regional southwest extension of the Yellowstone Plateau at up to 4.3 ± 0.2 mm/yr, while the eastern Snake River Plain moved southwest as a slower rate at 2.1 ± 0.2 mm/yr. This southwest extension of the Yellowstone-Snake River Plain system merged into east-west extension of the Basin-Range province. Copyright 2007 by the American Geophysical Union.

A comparison of the Stratospheric Aerosol and Gas Experiment II tropospheric water vapor to radiosonde measurements

NASA Technical Reports Server (NTRS)

Larsen, J. C.; Chiou, E. W.; Chu, W. P.; Mccormick, M. P.; Mcmaster, L. R.; Oltmans, S.; Rind, D.

1993-01-01

Results are presented of a comparison beteen observations of the upper-tropospheric water vapor data obtained from the Stratospheric Aerosol and Gas Experiment II (SAGE II) instrument and radiosonde observations for 1987 and radiosonde-based climatologies. Colocated SAGE II-radiosonde measurement pairs are compared individually and in a zonal mean sense. A straight comparison of monthly zonal means between SAGE II and radiosondes for 1987 and Global Atmospheric Statistics (1963-1973) indicates that the clear-sky SAGE II climatology is approximately half the level of clear/cloudy sky of both radiosonde climatologies. Annual zonal means calculated from the set of profile pairs again showed SAGE II to be significantly drier in many altitude bands.

Primary and secondary structural analyses of glutathione S-transferase pi from human placenta.

PubMed

Ahmad, H; Wilson, D E; Fritz, R R; Singh, S V; Medh, R D; Nagle, G T; Awasthi, Y C; Kurosky, A

1990-05-01

The primary structure of glutathione S-transferase (GST) pi from a single human placenta was determined. The structure was established by chemical characterization of tryptic and cyanogen bromide peptides as well as automated sequence analysis of the intact enzyme. The structural analysis indicated that the protein is comprised of 209 amino acid residues and gave no evidence of post-translational modifications. The amino acid sequence differed from that of the deduced amino acid sequence determined by nucleotide sequence analysis of a cDNA clone (Kano, T., Sakai, M., and Muramatsu, M., 1987, Cancer Res. 47, 5626-5630) at position 104 which contained both valine and isoleucine whereas the deduced sequence from nucleotide sequence analysis identified only isoleucine at this position. These results demonstrated that in the one individual placenta studied at least two GST pi genes are coexpressed, probably as a result of allelomorphism. Computer assisted consensus sequence evaluation identified a hydrophobic region in GST pi (residues 155-181) that was predicted to be either a buried transmembrane helical region or a signal sequence region. The significance of this hydrophobic region was interpreted in relation to the mode of action of the enzyme especially in regard to the potential involvement of a histidine in the active site mechanism. A comparison of the chemical similarity of five known human GST complete enzyme structures, one of pi, one of mu, two of alpha, and one microsomal, gave evidence that all five enzymes have evolved by a divergent evolutionary process after gene duplication, with the microsomal enzyme representing the most divergent form.

Rebuilding after collapse: evidence for long-term cohort dynamics in the native Hawaiian rain forest

USGS Publications Warehouse

Boehmer, Hans Juergen; Wagner, Helene H.; Jacobi, James D.; Gerrish, Grant C.; Mueller-Dombois, Dieter

2013-01-01

Questions: Do long-term observations in permanent plots confirm the conceptual model of Metrosideros polymorpha cohort dynamics as postulated in 1987? Do regeneration patterns occur independently of substrate age, i.e. of direct volcanic disturbance impact? Location: The windward mountain slopes of the younger Mauna Loa and the older Mauna Kea volcanoes (island of Hawaii, USA). Methods: After widespread forest decline (dieback), permanent plots were established in 1976 in 13 dieback and 13 non-dieback patches to monitor the population structure of M. polymorpha at ca. 5-yr intervals. Within each plot of 20 × 20 m, all trees with DBH >2.5 cm were individually tagged, measured and tree vigour assessed; regeneration was quantified in 16 systematically placed subplots of 3 × 5 m. Data collected in the subplots included the total number of M. polymorpha seedlings and saplings (five stem height classes). Here we analyse monitoring data from six time steps from 1976 to 2003 using repeated measures ANOVA to test specific predictions derived from the 1987 conceptual model. Results: Regeneration was significantly different between dieback and non-dieback plots. In dieback plots, the collapse in the 1970s was followed by a ‘sapling wave’ that by 2003 led to new cohort stands of M. polymorpha. In non-dieback stands, seedling emergence did not result in sapling waves over the same period. Instead, a ‘sapling gap’ (i.e. very few or no M. polymorpha saplings) prevailed as typical for mature stands. Canopy dieback in 1976, degree of recovery by 2003 and the number of living trees in 2003 were unrelated to substrate age. Conclusions: Population development of M. polymorpha supports the cohort dynamics model, which predicts rebuilding of the forest with the same canopy species after dieback. The lack of association with substrate age suggests that the long-term maintenance of cohort structure in M. polymorpha does not depend on volcanic disturbance but may be related to other environmental mechanisms, such as climate anomalies.

Public Relations Behavior as a Function of Organizational Type: A Comparison of Manufacturing versus Service Organizations.

ERIC Educational Resources Information Center

Lauzen, Martha M.; Dozier, David M.

A study was conducted to examine the model of public relations practiced and level of research utilization in service versus manufacturing organizations. The study was a secondary analysis of a survey of the International Association of Business Communicators conducted in August 1987. Questionnaires were mailed to 760 people from the 1987…

The Crystal Structure of Illite/Smectite.

DTIC Science & Technology

1988-04-04

summarized from Tellier and Reynolds (1987). Figure 3 shows a comparison between experimental and calculated diffraction patterns for the ethylene glycol...PUBLICATIONS Tellier . K. and Reynolds, R. C. (1987) Calculation of one-dimensional X-ray diffraction profiles of interstratified illite/smectite as...Abst.) 24th Annual fMeet Clay Min. Soc., Socorro, N. M., p. 115 PARTICIPATING SCIENTIFIC PERSONNEL Kathleen Tellier : Dept. of Earth Sciences

Short Polarity Albian Events in the Cretaceous Normal Superchron - Magnetostratigraphy of the Morelos and Tlayua Formations (Mexico)

NASA Astrophysics Data System (ADS)

Benammi, M.; Urrutia-Fucugauchi, J.

2007-12-01

Interest in the long period of normal polarity in the Cretaceous has continued to increase since the early study of Helsley and Steiner (1969), who suspected that it corresponded to vast stretches of relatively low amplitude behaviour in the sea-floor magnetic anomaly profiles known informally as the "Cretaceous quiet zone". Since these first studies, paleomagnetists have continued to explore what is now known as the Cretaceous Normal Superchron, an interval of prolonged normal polarity from 118 to 84 Ma. Paleomagnetic data from sediment cores from the DSDP Holes 369, 386, and 364, were interpreted as brief reverse intervals (Keating and Helsley, 1978, 1979). Relatively fewer studies have been reported for land-based sections of pelagic and platform limestones; reports include studies in northern and central Italy (Vandenberg et al., 1978; Tarduno et al., 1992; Tarduno, 1990; Cronin et al., 2001) and Mexico (Urrutia-Fucugauchi, 1988; Benammi et al., 2006). We present here new magnetostratigraphic data for limestone sequences in central and southern Mexico from the Cretaceous Morelos and Tlayua Formations, which record short intervals of reversed polarity during the K normal superchron. The Morelos Formation has been revisited in Guerrero, southern Mexico, where the sequence of platform limestones with almost horizontal thick beds is well-exposed. The magnetostratigraphy shows dominant normal polarity for the sampled sections, with the occurrence of three short reverse polarity intervals corresponding to the Albian, which have been re-sampled and studied in additional detail for magnetic mineralogy and remanent acquisition. The Tlayua Formation is sampled in Tepeji de Rodriguez area, which is known for its rich and well-preserved fossil contents. Age control has mainly been provided from studies on ammonites, belemnites and benthic foraminifera (Cantu, 1987; Seibertz and Buitron, 1987; Kashiyama et al., 2003). Nine polarity intervals are documented in the Tlayua Middle Member, which correlate with middle part of chron C34n (C34n.1n-C34n.2n, 100-105 Ma). Results give further evidence for occurrence of short polarity events within the K normal superchron, and provide additional documentation on the polarity events.

Determination of the Structural Basis of Antibody Diversity Using NMR

DTIC Science & Technology

1989-06-15

Tomasello , J., & Whitaker, the time - in terms of the true first-order off rate constants M. (1987) Biochemistry 26, 6058-6064. kso and kDO and the fractional...Levitt. M., spectra is unlikely to yield sequence-specific assignments for McConnell, H. M., Rule. G. S., Tomasello , J. & Whittaker. M. AN02. The...Leahy, D. J., Levitt, M., McConnell, H. M., Rule, G. S., Tomasello , J., & Whittaker, M. (1987) Biochemistry 26, 6058-6064. Leahy, D. J., Rule, G. S

Massive star evolution and SN 1987A

NASA Technical Reports Server (NTRS)

Arnett, David

1991-01-01

The evolution of massive stars through hydrogen and helium burning is addressed. A set of stellar evolutionary sequences for mass/solar mass of 15, 20, and 25, and metallicity of 0.002, 0.005, 0.007, 0.010, and 0.20 are presented; semiconvection is restricted to operating slower than the local thermal time scale. Using these sequences, simple models of the massive star content of the LMC are found to agree moderately well with the new observational data of Fitzpatrick and Garmany (1990). LMC supergiants were detected only in their postmain-sequence phases, so that 5-10 times more massive stars are there but not identified as such. It is argued that SN 1987A exhibits the normal evolution of a single star of about 20 solar mases having LMC abundances. Despite the variety of envelope behavior, the structure of the core at collapse is rather similar for the stars of a given mass. Variations due to different rates of mass loss are likely to be larger than those due to composition.

A comparison of results obtained from foil chaff clouds at 69 deg northern latitude during winter, summer and autumn

NASA Technical Reports Server (NTRS)

Widdel, H. U.; Vonzahn, U.

1989-01-01

Results from high resolution foil chaff experiments flown during the campaigns MAP/WINE (December 83 to February 84), MAC/SINE (June to July 1987) and Epsilon (October to November 1987) at Andenes (Northern Norway) are compared to each other and the differences in wind direction and wave activity during the different seasons are worked out.

The Use of Persian in the EFL Classroom--The Case of English Teaching and Learning at Pre-University Level in Iran

ERIC Educational Resources Information Center

Mahmoudi, Leila; Amirkhiz, Seyed Yasin Yazdi

2011-01-01

Inspired by the rise of Communicative Language Teaching, some scholars have vehemently rejected any use of L1 in L2 learning classes (e.g., Atkinson, 1987) while others have advocated the use of L1 as an efficient tool to facilitate communication (e.g., Nation, 2003). However, caution has been raised against the excessive use of L1 (Nation, 2001).…

Centralized Control of Defense Acquisition Programs: A Comparative Review of the Framework from 1987 - 2003

DTIC Science & Technology

2003-09-29

for information Operations and Reports, 1215 Jefferson Davis Highway, Suite 1204, Arlington, VA 22202-4302, and to the Office of Management and Budget...selected to be the Product Manager for the Joint Advanced Special Operations Radio System, at Fort Monmouth, New Jersey and successfully completed a...use,” or in defense terms-- operational effectiveness and suitability. Beyond the business aspects of program management , measurement of system

A second glucagon in the pancreatic islets of the daddy sculpin Cottus scorpius.

PubMed

Cutfield, S M; Cutfield, J F

1993-09-01

The peptide hormone glucagon has been isolated from the islet tissue (Brockmann bodies) of the teleost Cottus scorpius (daddy sculpin) and sequenced. The sequence is HSEGTSNDYSKYLEDRKAQDFVQWLMNN differing at four positions from the glucagon found earlier in the same species by Conlon and coworkers (1987b, Eur. J. Biochem, 164, 117-122). Thus sculpin, in common with anglerfish, possesses two distinct glucagons. Comparative sequence data are presented as a phylogenetic tree.

Phylum- and Class-Specific PCR Primers for General Microbial Community Analysis

PubMed Central

Blackwood, Christopher B.; Oaks, Adam; Buyer, Jeffrey S.

2005-01-01

Amplification of a particular DNA fragment from a mixture of organisms by PCR is a common first step in methods of examining microbial community structure. The use of group-specific primers in community DNA profiling applications can provide enhanced sensitivity and phylogenetic detail compared to domain-specific primers. Other uses for group-specific primers include quantitative PCR and library screening. The purpose of the present study was to develop several primer sets targeting commonly occurring and important groups. Primers specific for the 16S ribosomal sequences of Alphaproteobacteria, Betaproteobacteria, Bacilli, Actinobacteria, and Planctomycetes and for parts of both the 18S ribosomal sequence and the internal transcribed spacer region of Basidiomycota were examined. Primers were tested by comparison to sequences in the ARB 2003 database, and chosen primers were further tested by cloning and sequencing from soil community DNA. Eighty-five to 100% of the sequences obtained from clone libraries were found to be placed with the groups intended as targets, demonstrating the specificity of the primers under field conditions. It will be important to reevaluate primers over time because of the continual growth of sequence databases and revision of microbial taxonomy. PMID:16204538

The potential impact of contemporary transthoracic echocardiography on the management of patients with native valve endocarditis: a comparison with transesophageal echocardiography.

PubMed

Casella, Francesco; Rana, Bushra; Casazza, Giovanni; Bhan, Amit; Kapetanakis, Stam; Omigie, Joe; Reiken, Joseph; Monaghan, Mark J

2009-09-01

Between 1987 and 1994, several studies demostrated transthoracic echocardiography (TTE) to be less sensitive than transesophageal echocardiography (TEE) in detecting native valve endocarditis. Recent technologic advances, especially the introduction of harmonic imaging and digital processing and storage, have improved TTE image quality. The aim of this study was to determine the diagnostic accuracy of contemporary TTE. Between 2003 and 2007, 75 patients underwent both TTE and TEE for clinically suspected infective endocarditis. The diagnostic accuracy of TTE was assessed using transesophageal echocardiography as the gold standard for diagnosis of endocarditis. Of the 75 patients in this study, 33 were found to be positive by TEE. The sensitivity for detection of infective endocarditis by TTE was 81.8%. It provided good image quality in 81.5% of cases; in these patients sensitivity was even greater (89.3%). Contemporary TTE has improved the diagnostic accuracy of infective endocarditis by ameliorating image quality; it provides an accurate assessment of endocarditis and may reduce the need for TEE.

A 28,000 Years Old Cro-Magnon mtDNA Sequence Differs from All Potentially Contaminating Modern Sequences

PubMed Central

Caramelli, David; Milani, Lucio; Vai, Stefania; Modi, Alessandra; Pecchioli, Elena; Girardi, Matteo; Pilli, Elena; Lari, Martina; Lippi, Barbara; Ronchitelli, Annamaria; Mallegni, Francesco; Casoli, Antonella; Bertorelle, Giorgio; Barbujani, Guido

2008-01-01

Background DNA sequences from ancient speciments may in fact result from undetected contamination of the ancient specimens by modern DNA, and the problem is particularly challenging in studies of human fossils. Doubts on the authenticity of the available sequences have so far hampered genetic comparisons between anatomically archaic (Neandertal) and early modern (Cro-Magnoid) Europeans. Methodology/Principal Findings We typed the mitochondrial DNA (mtDNA) hypervariable region I in a 28,000 years old Cro-Magnoid individual from the Paglicci cave, in Italy (Paglicci 23) and in all the people who had contact with the sample since its discovery in 2003. The Paglicci 23 sequence, determined through the analysis of 152 clones, is the Cambridge reference sequence, and cannot possibly reflect contamination because it differs from all potentially contaminating modern sequences. Conclusions/Significance: The Paglicci 23 individual carried a mtDNA sequence that is still common in Europe, and which radically differs from those of the almost contemporary Neandertals, demonstrating a genealogical continuity across 28,000 years, from Cro-Magnoid to modern Europeans. Because all potential sources of modern DNA contamination are known, the Paglicci 23 sample will offer a unique opportunity to get insight for the first time into the nuclear genes of early modern Europeans. PMID:18628960

Comparisons of estimates of annual exceedance-probability discharges for small drainage basins in Iowa, based on data through water year 2013

USGS Publications Warehouse

Eash, David A.

2015-01-01

An examination was conducted to understand why the 1987 single-variable RREs seem to provide better accuracy and less bias than either of the 2013 multi- or single-variable RREs. A comparison of 1-percent annual exceedance-probability regression lines for hydrologic regions 1-4 from the 1987 single-variable RREs and for flood regions 1-3 from the 2013 single-variable RREs indicates that the 1987 single-variable regional-regression lines generally have steeper slopes and lower discharges when compared to 2013 single-variable regional-regression lines for corresponding areas of Iowa. The combination of the definition of hydrologic regions, the lower discharges, and the steeper slopes of regression lines associated with the 1987 single-variable RREs seem to provide better accuracy and less bias when compared to the 2013 multi- or single-variable RREs; better accuracy and less bias was determined particularly for drainage areas less than 2 mi2, and also for some drainage areas between 2 and 20 mi2. The 2013 multi- and single-variable RREs are considered to provide better accuracy and less bias for larger drainage areas. Results of this study indicate that additional research is needed to address the curvilinear relation between drainage area and AEPDs for areas of Iowa.

Lights out: Impact of the August 2003 power outage on mortality in New York, NY

PubMed Central

Anderson, G. Brooke; Bell, Michelle L.

2012-01-01

Background Little is known about how power outages affect health. We investigated mortality effects of the largest US blackout to date, August 14–15, 2003 in New York, NY. Methods We estimated mortality risk in New York, NY, using a generalized linear model with data from 1987–2005. We incorporated possible confounders, including weather and long-term and seasonal mortality trends. Results During the blackout, mortality increased for accidental deaths (122% [95% confidence interval = 28%–287%]) and non-accidental (i.e., disease-related) deaths (25% [12%–41%]), resulting in approximately 90 excess deaths. Increased mortality was not from deaths being advanced by a few days; rather, mortality risk remained slightly elevated through August 2003. Discussion To our knowledge, this is the first analysis of power outages and non-accidental mortality. Understanding the impact of power outages on human health is relevant, given that increased energy demand and climate change are likely to put added strain on power grids. PMID:22252408

A symmetric bipolar nebula around MWC 922.

PubMed

Tuthill, P G; Lloyd, J P

2007-04-13

We report regular and symmetric structure around dust-enshrouded Be star MWC 922 obtained with infrared imaging. Biconical lobes that appear nearly square in aspect, forming this "Red Square" nebula, are crossed by a series of rungs that terminate in bright knots or "vortices," and an equatorial dark band crossing the core delimits twin hyperbolic arcs. The intricate yet cleanly constructed forms that comprise the skeleton of the object argue for minimal perturbation from global turbulent or chaotic effects. We also report the presence of a linear comb structure, which may arise from optically projected shadows of a periodic feature in the inner regions, such as corrugations in the rim of a circumstellar disk. The sequence of nested polar rings draws comparison with the triple-ring system seen around the only naked-eye supernova in recent history: SN1987A.

Wave propagation in the marginal ice zone - Model predictions and comparisons with buoy and synthetic aperture radar data

NASA Technical Reports Server (NTRS)

Liu, Antony K.; Holt, Benjamin; Vachon, Paris W.

1991-01-01

Ocean wave dispersion relation and viscous attenuation by a sea ice cover are studied for waves propagating into the marginal ice zone (MIZ). The Labrador ice margin experiment (LIMEX), conducted on the MIZ off the east coast of Newfoundland, Canada in March 1987, provided aircraft SAR imagery, ice property and wave buoy data. Wave energy attenuation rates are estimated from SAR data and the ice motion package data that were deployed at the ice edge and into the ice pack, and compared with a model. It is shown that the model data comparisons are quite good for the ice conditions observed during LIMEX 1987.

Solar g-mode oscillations: Comparison of SMM-ACRIM and ground-based observations

NASA Technical Reports Server (NTRS)

Scherrer, Philip H.

1989-01-01

Progress was made in access to data and in developing programs for its analysis. The difficulties in completing the work in the planned time can be traced to several factors. The correction of the Stanford oscillation using gridded intensity data was not successful. It was concluded that due to poor continuity of the 1985 and 1986 data due to clouds, that a joint analysis with the ACRIM data (best solar oscillation data to date) on the summer 1987 observations should be performed. The 1988 Stanford oscillation data are being examined and the cross comparison of the ACRIM spectrum with the Standford spectrum for 1987 in the g-mode regime will shortly begin.

Evaluation of Auditory Characteristics of Communications and Hearing Protection Systems (C&HPS) Part 3 - Auditory Localization

DTIC Science & Technology

2013-08-01

of ANR is in headphones, such as those marketed to frequent fliers for listening to music on airplanes. ANR is much better at reducing low...1966; Butler, 1987; Hofman and Van Opstal, 2003; Hofman et al., 1998; Javer and Schwarz, 1995; Musicant and Butler, 1980; Van Wanrooij and Van Opstal...improvements in performance over time; further, training sped up the process of learning. Other investigators have demonstrated similar effects with passive

Prevalence of obesity and diabetes in Spanish adults 1987-2012.

PubMed

Basterra-Gortari, Francisco Javier; Bes-Rastrollo, Maira; Ruiz-Canela, Miguel; Gea, Alfredo; Martinez-Gonzalez, Miguel Ángel

2017-03-22

The prevalence of obesity and diabetes mellitus (DM) has increased worldwide. Our objective was to examine trends in the prevalence of overweight, obesity, morbid obesity and DM in Spain from 1987 to 2012. Data were obtained from 8 waves of the national health surveys which are cross-sectional studies conducted in representative samples of the Spanish adult population. Self-reported data of 156,440 adults (≥16 years) from 1987 to 2012 were used. Body mass index (BMI) was calculated from self-reported weight and height. Overweight was defined as a BMI of 25.0 to 29.9kg/m 2 , obesity as a BMI≥30kg/m 2 and morbid obesity as a BMI≥40kg/m 2 . DM was considered present if the participant reported having been diagnosed. Age-adjusted prevalence was adjusted by the direct standardisation method to the 2003 survey population. From 1987 to 2012 age-adjusted prevalence of overweight increased from 34.0% (95% confidence interval [95% CI] 33.2-34.8) to 35.8% (95% CI 35.0-36.6), prevalence of obesity from 8.0% (95% CI 7.5-8.5) to 16.5% (95% CI 15.7-17.1%) and DM prevalence from 4.2% (95% CI 3.9-4.5) to 7.1% (95% CI 6.7-7.4%). Morbid obesity increased from 0.20% (95% CI 0.13-0.27) in 1993 to 0.88% (95% CI 0.70-1.05) in 2012. The growth rate was greater among males. An increasing trend of the prevalence of overweight, obesity, morbid obesity and DM was found in Spain from 1987 to 2012, particularly in males. Copyright © 2016 Elsevier España, S.L.U. All rights reserved.

A Comparison of Methods for Detecting Differential Distractor Functioning

ERIC Educational Resources Information Center

Koon, Sharon

2010-01-01

This study examined the effectiveness of the odds-ratio method (Penfield, 2008) and the multinomial logistic regression method (Kato, Moen, & Thurlow, 2009) for measuring differential distractor functioning (DDF) effects in comparison to the standardized distractor analysis approach (Schmitt & Bleistein, 1987). Students classified as participating…

49 CFR 565.25 - Content requirements.

Code of Federal Regulations, 2010 CFR

2010-10-01

... for VIN Year Code 1980 A 1981 B 1982 C 1983 D 1984 E 1985 F 1986 G 1987 H 1988 J 1989 K 1990 L 1991 M 1992 N 1993 P 1994 R 1995 S 1996 T 1997 V 1998 W 1999 X 2000 Y 2001 1 2002 2 2003 3 2004 4 2005 5 2006... J = 1 K = 2 L = 3 M = 4 N = 5 P = 7 R = 9 S = 2 T = 3 U = 4 V = 5 W = 6 X = 7 Y = 8 Z = 9 (2...

Characteristics of Living and Deceased Suicidal Military Personnel Based on Single Versus Multiple Suicide Attempt Status

DTIC Science & Technology

2012-03-27

2004) found that individuals with multiple suicide attempts were more likely to have been emotionally abused in childhood , even after controlling... parents in the home during childhood and more likely to have lost both parents than women with a single attempt (Stephens, 1987). Kaslow and...living alone (Osváth, et al., 2003) or being divorced , widowed, or separated have all been linked to more than one attempt (Kaslow, et al., 2006

Supplemental Report on Academic Salaries, 1987-88. A Report to the Governor and Legislature in Response to Senate Concurrent Resolution No. 51 (1965) and Subsequent Postsecondary Salary Legislation. Commission Report 88-30.

ERIC Educational Resources Information Center

California State Postsecondary Education Commission, Sacramento.

Data are presented on faculty and administrator salaries in the California community colleges, with comparative figures for the University of California (UC) and the California State University (CSU). Section 1 presents UC and CSU comparison group average salaries for 1982-83 and 1987-88, including information on compound rates of interest,…

The speEspeD operon of Escherichia coli. Formation and processing of a proenzyme form of S-adenosylmethionine decarboxylase.

PubMed

Tabor, C W; Tabor, H

1987-11-25

We have previously shown that the gene (speD) for S-adenosylmethionine decarboxylase is part of an operon that also contains the gene (speE) for spermidine synthase (Tabor, C. W., Tabor, H., and Xie, Q.-W. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 6040-6044). We have now determined the nucleotide sequence of this operon and have found that speD codes for a polypeptide of Mr = 30,400, which is considerably greater than the subunit size of the purified enzyme. Our studies show that S-adenosylmethionine decarboxylase is first formed as a Mr = 30,400 polypeptide and that this proenzyme is then cleaved at the Lys111-Ser112 peptide bond to form a Mr = 12,400 subunit and a Mr = 18,000 subunit. The latter subunit contains the pyruvoyl moiety that we previously showed is required for enzymatic activity. Both subunits are present in the purified enzyme. These conclusions are based on (i) pulse-chase experiments with a strain containing a speD+ plasmid which showed a precursor-product relationship between the proenzyme and the enzyme subunits, (ii) the amino acid sequence of the proenzyme form of S-adenosylmethionine decarboxylase (derived from the nucleotide sequence of the speD gene), and (iii) comparison of this sequence of the proenzyme with the N-terminal amino acid sequences of the two subunits of the purified enzyme reported by Anton and Kutny (Anton, D. L., and Kutny, R. (1987) J. Biol. Chem. 262, 2817-2822).

NMC stratospheric analyses during the 1987 Antarctic expedition

NASA Technical Reports Server (NTRS)

Gelman, Melvyn E.; Newman, Paul A.

1988-01-01

Stratospheric constant pressure analyses of geopotential height and temperature, produced as part of regular operations at the National Meteorological Center (NMC), were used by several participants of the Antarctic Ozone Expedition. A brief decription is given of the NMC stratospheric analyses and the data that are used to derive them. In addition, comparisons of the analysis values at the locations of radiosonde and aircraft data are presented to provide indications for assessing the representativeness of the NMC stratospheric analyses during the 1987 Antarctic winter-spring period.

Integrated NDVI images for Niger 1986-1987. [Normalized Difference Vegetation Index

NASA Technical Reports Server (NTRS)

Harrington, John A., Jr.; Wylie, Bruce K.; Tucker, Compton J.

1988-01-01

Two NOAA AVHRR images are presented which provide a comparison of the geographic distribution of an integration of the normalized difference vegetation index (NDVI) for the Sahel zone in Niger for the growing seasons of 1986 and 1987. The production of the images and the application of the images for resource management are discussed. Daily large area coverage with a spatial resolution of 1.1 km at nadir were transformed to the NDVI and geographically registered to produce the images.

Photosynthetic responses to altitude: an explanation based on optimality principles

DOE PAGES

Wang, Han; Prentice, I. Colin; Davis, Tyler W.; ...

2016-11-18

Ecophysiologists have long been fascinated by the photosynthetic behaviour of alpine plants, which often have to withstand extreme environmental pressures (Gale, 1972; Friend&Woodward, 1990; Korner, 2003, 2007; Shi et al., 2006). About 8%of the world’s land surface is above 1500 maltitude (Korner, 2007). High altitudes can be climatically unusual, often with (for example) low temperatures, strong winds, and now high rates of warming (Korner, 2003; Pepin &Lundquist, 2008; Rangwala&Miller, 2012). Moreover, the low atmospheric pressure provides a set of environmental conditions unique on Earth (Table 1). There has been extensive speculation about altitudinal effects on photosynthesis and, in particular, howmore » to account for the puzzling – but consistently observed – tendencies towards higher carbon dioxide (CO 2) drawdown (low ratio of leafinternal to ambient CO 2 partial pressures (c i:c a; hereafter, v), resulting in low carbon isotope discrimination) and higher carboxylation capacity (V cmax) with increasing altitude (Gale, 1972; Korner & Diemer, 1987; Friend et al., 1989; Terashima et al., 1995; Bresson et al., 2009; Zhu et al., 2010). At first glance, it might be expected that CO 2 assimilation rates would be reduced at high altitudes due to the low partial pressure of CO 2 (Friend & Woodward, 1990). But, actual measured photosynthetic rates are usually as high as, or even higher than, those at low altitudes (Machler & Nosberger, 1977; Korner & Diemer, 1987; Cordell et al., 1999; Shi et al., 2006).« less

Photosynthetic responses to altitude: an explanation based on optimality principles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Han; Prentice, I. Colin; Davis, Tyler W.

Ecophysiologists have long been fascinated by the photosynthetic behaviour of alpine plants, which often have to withstand extreme environmental pressures (Gale, 1972; Friend&Woodward, 1990; Korner, 2003, 2007; Shi et al., 2006). About 8%of the world’s land surface is above 1500 maltitude (Korner, 2007). High altitudes can be climatically unusual, often with (for example) low temperatures, strong winds, and now high rates of warming (Korner, 2003; Pepin &Lundquist, 2008; Rangwala&Miller, 2012). Moreover, the low atmospheric pressure provides a set of environmental conditions unique on Earth (Table 1). There has been extensive speculation about altitudinal effects on photosynthesis and, in particular, howmore » to account for the puzzling – but consistently observed – tendencies towards higher carbon dioxide (CO 2) drawdown (low ratio of leafinternal to ambient CO 2 partial pressures (c i:c a; hereafter, v), resulting in low carbon isotope discrimination) and higher carboxylation capacity (V cmax) with increasing altitude (Gale, 1972; Korner & Diemer, 1987; Friend et al., 1989; Terashima et al., 1995; Bresson et al., 2009; Zhu et al., 2010). At first glance, it might be expected that CO 2 assimilation rates would be reduced at high altitudes due to the low partial pressure of CO 2 (Friend & Woodward, 1990). But, actual measured photosynthetic rates are usually as high as, or even higher than, those at low altitudes (Machler & Nosberger, 1977; Korner & Diemer, 1987; Cordell et al., 1999; Shi et al., 2006).« less

Swallow Event Sequencing: Comparing Healthy Older and Younger Adults.

PubMed

Herzberg, Erica G; Lazarus, Cathy L; Steele, Catriona M; Molfenter, Sonja M

2018-04-23

Previous research has established that a great deal of variation exists in the temporal sequence of swallowing events for healthy adults. Yet, the impact of aging on swallow event sequence is not well understood. Kendall et al. (Dysphagia 18(2):85-91, 2003) suggested there are 4 obligatory paired-event sequences in swallowing. We directly compared adherence to these sequences, as well as event latencies, and quantified the percentage of unique sequences in two samples of healthy adults: young (< 45) and old (> 65). The 8 swallowing events that contribute to the sequences were reliably identified from videofluoroscopy in a sample of 23 healthy seniors (10 male, mean age 74.7) and 20 healthy young adults (10 male, mean age 31.5) with no evidence of penetration-aspiration or post-swallow residue. Chi-square analyses compared the proportions of obligatory pairs and unique sequences by age group. Compared to the older subjects, younger subjects had significantly lower adherence to two obligatory sequences: Upper Esophageal Sphincter (UES) opening occurs before (or simultaneous with) the bolus arriving at the UES and UES maximum distention occurs before maximum pharyngeal constriction. The associated latencies were significantly different between age groups as well. Further, significantly fewer unique swallow sequences were observed in the older group (61%) compared with the young (82%) (χ 2  = 31.8; p < 0.001). Our findings suggest that paired swallow event sequences may not be robust across the age continuum and that variation in swallow sequences appears to decrease with aging. These findings provide normative references for comparisons to older individuals with dysphagia.

Do We Really Know the Prevalence of MIH?

PubMed

Hernandez, M; Boj, J R; Espasa, E

2016-01-01

To analyze the existing variability on molar incisor hypomineralization prevalence in the literature; to distinguish the various molar incisor hypomineralization prevalence rates in different countries, areas, and regions of the world; and to know the valid diagnostic criteria used for the correct identification of molar incisor hypomineralization prevalence. A literature review from Medline and Cochrane Library online databases was performed using five terms individually or in combination. Articles not reporting diagnostic criteria employed and articles not written English were excluded. The results were analyzed by country, region, year of study, sample size, range of age, and prevalence rate. A total of 37 articles in English were selected from 1987 to 2014 and from those only 14 employed the EAPD's 2003 diagnostic criteria. The reported age range varied from 5.5 to 17 years; the most frequently range used was 7 to 9 years. A wide prevalence range from 2.8% to 44% was found and 82.61% of the articles reported calibrated examiners. Comparison among the results of the studies is difficult due to the use of different indexes and diagnostic criteria, the analysis variability, selection methods, and different age groups. In reality, we are probably far from knowing the real MIH prevalence.

VizieR Online Data Catalog: CCD photometry of Pal 1 (Borissova+ 1995)

NASA Astrophysics Data System (ADS)

Borissova, J.; Spassova, N.

1997-06-01

A CCD photometry of the halo cluster Palomar 1 is presented in the Thuan-Gunn photometric system. The principal sequences of the color-magnitude diagrams are delineated in different spectral bands. The color- magnitude diagrams of the cluster show a well defined red horizontal branch, a subgiant branch and a main-sequence down to about two magnitudes below the main sequence turnoff. The giant branch is absent and the brightest stars are the horizontal branch stars. The age of the cluster determined by comparison with the isochrones of Bell & VandenBerg (1987ApJS...63..335B) is consistent with an age in the interval 12-14Gyr. A distance modulus of (m-M)g0=15.38+/-0.15 magnitude and E(g-r)=0.16 has been derived. An estimate of the cluster structural parameters such as core radius and concentration parameter gives rc=1.5pc and c=1.46. A mass estimate of 1.1x103M⊙ and a mass-to-light ratio of 1.79 have been obtained using King's (1966AJ.....71...64K) method. The morphology of color-magnitude diagrams allows Pal 1 to be interpreted as probably a globular cluster rather than an old open one. For a description of the uvgr photometric system, see e.g. (1 data file).

Comparison between the land surface response of the ECMWF model and the FIFE-1987 data

NASA Technical Reports Server (NTRS)

Betts, Alan K.; Ball, John H.; Beljaars, Anton C. M.

1993-01-01

An averaged time series for the surface data for the 15 x 15 km FIFE site was prepared for the summer of 1987. Comparisons with 48-hr forecasts from the ECMWF model for extended periods in July, August, and October 1987 identified model errors in the incoming SW radiation in clear skies, the ground heat flux, the formulation of surface evaporation, the soil-moisture model, and the entrainment at boundary-layer top. The model clear-sky SW flux is too high at the surface by 5-10 percent. The ground heat flux is too large by a factor of 2 to 3 because of the large thermal capacity of the first soil layer (which is 7 cm thick), and a time truncation error. The surface evaporation was near zero in October 1987, rather than of order 70 W/sq m at noon. The surface evaporation falls too rapidly after rainfall, with a time-scale of a few days rather than the 7-10 d (or more) of the observations. On time-scales of more than a few days the specified 'climate layer' soil moisture, rather than the storage of precipitation, has a large control on the evapotranspiration. The boundary-layer-top entrainment is too low. This results in a moist bias in the boundary-layer mixing ratio of order 2 g/Kg in forecasts from an experimental analysis with nearly realistic surface fluxes; this because there is insufficient downward mixing of dry air.

The quest for blue supergiants : The evolution of the progenitor of SN 1987A

NASA Astrophysics Data System (ADS)

Menon, Athira; Heger, Alexander

2015-08-01

SN 1987A is historically one of the most remarkable supernova explosions to be seen from Earth. Due to the proximity of its location in the LMC, it remains the most well-studied object outside the solar system. It was also the only supernova whose progenitor was observed prior to its explosion.SN 1987A however, was a unique and enigmatic core collapse supernova. It was the first Type II supernova to have been observed to have exploded while its progenitor was a blue supergiant (BSG). Until then Type II supernovae were expected to originate from explosions of red supergiants (RSGs). A spectacular triple-ring nebula structure, rich in helium and nitrogen, was observed around the remnant, indicating a recent RSG phase before becoming a BSG. Even today it is not entirely understood what the evolutionary history may have been to cause a BSG to explode. The most commonly accepted hypothesis for its origin is the merger of a massive binary star system.An evolutionary scenario for such a binary system, was proposed by Podsiadlowski (1992) (P92). Through SPH simulations of the merger and the stellar evolution of the post-merger remnant, Ivanova & Podsiadlowski (2002) and (2003) (I&M) could successfully obtain the RSG to BSG transition of the progenitor.The aim of the present work is to produce the evolutionary history of the progenitor of SN 1987A and its explosion. We construct our models based on the results of P92 and I&M. Here, the secondary (less massive) star is accreted on the primary, while being simultaneously mixed in its envelope over a period of 100 years. The merged star is evolved until the onset of core collapse. For this work we use the 1-dimensional, implicit, hydrodynamical stellar evolution code, KEPLER. A large parameter space is explored, consisting of primary (16-20 Ms) and secondary masses (5-8 Ms), mixing boundaries, and accreting timescales. Those models whose end states match the observed properties of the progenitor of SN 1987A are exploded. The nuclear yields and light curve of the explosion are then compared with the observed data of SN 1987A.

Core collapse supernovae from blue supergiant progenitors : The evolutionary history of SN 1987A

NASA Astrophysics Data System (ADS)

Menon, Athira

2015-08-01

SN 1987A is historically one of the most remarkable supernova explosions to be seen from Earth. Due to the proximity of its location in the LMC, it remains the most well-studied object outside the solar system. It was also the only supernova whose progenitor was observed prior to its explosion.SN 1987A however, was a unique and enigmatic core collapse supernova. It was the first Type II supernova to have been observed to have exploded while its progenitor was a blue supergiant (BSG). Until then Type II supernovae were expected to originate from explosions of red supergiants (RSGs). A spectacular triple-ring nebula structure, rich in helium and nitrogen, was observed around the remnant, indicating a recent RSG phase before becoming a BSG. Even today it is not entirely understood what the evolutionary history may have been to cause a BSG to explode. The most commonly accepted hypothesis for its origin is the merger of a massive binary star system.An evolutionary scenario for such a binary system, was proposed by Podsiadlowski (1992) (P92). Through SPH simulations of the merger and the stellar evolution of the post-merger remnant, Ivanova & Podsiadlowski (2002) and (2003) (I&M) could successfully obtain the RSG to BSG transition of the progenitor.The aim of the present work is to produce the evolutionary history of the progenitor of SN 1987A and its explosion. We construct our models based on the results of P92 and I&M. Here, the secondary (less massive) star is accreted on the primary, while being simultaneously mixed in its envelope over a period of 100 years. The merged star is evolved until the onset of core collapse. For this work we use the 1-dimensional, implicit, hydrodynamical stellar evolution code, KEPLER. A large parameter space is explored, consisting of primary (16-20 Ms) and secondary masses (5-8 Ms), mixing boundaries, and accreting timescales. Those models whose end states match the observed properties of the progenitor of SN 1987A are exploded. The nuclear yields and light curve of the explosion are then compared with the observed data of SN 1987A.

Supernova 1987A in the Large Magellanic Cloud

NASA Astrophysics Data System (ADS)

Kafatos, Minas; Michalitsianos, Andrew G.

2006-11-01

Foreword; Acknowledgements; Workshop participants; 1. Images and spectrograms of Sanduleak - 69º202, the SN 1987a progenitor N. R. Walborn; 2. The progenitor of SN 1987A G. Sonneborn; 3. Another supernova with a blue progenitor C. M. Gaskell and W. C. Keel; 4. Optical and infrared observations of SN 1987A from Cerro Tololo Inter-American Observatory M. M. Phillips; 5. SN 1987A: observational results obtained at ESO I. J. Danziger, P. Bouchet, R. A. E. Fosbury, C. Gouiffes, L. B. Lucy, A. F. M. Moorwood, E. Oliva and F. Rufener; 6. Observations of SN 1987A at the South African Astronomical Observatory (SAAO) M. W. Feast; 7. Observations of SN 1987A at the Anglo-Australian Telescope W. J. Couch; 8. Linear polarimetric study of SN 1987A A. Clocchiatti, M. Méndez, O. Benvenuto, C. Feinstein, H. Marraco, B. García and N. Morrell; 9. Infrared spectroscopy of SN 1987A from the NASA Kuiper Airborne Observatory H. P. Larson, S. Drapatz, M. J. Mumma and H. A. Weaver; 10. Radio observations of SN 1987A N. Bartel et al.; 11. Ultraviolet observations of SN 1987A: clues to mass loss R. P. Kirshner; 12. On the energetics of SN 1987A N. Panagia; 13. On the nature and apparent uniqueness of SN 1987A A. V. Filippenko; 14. A comparison of the SN 1987A light curve with other type II supernovae, and the detectability of similar supernovae M. F. Schmitz and C. M. Gaskell; 15. P-Cygni features and photospheric velocities L. Bildsten and J. C. L. Wang; 16. The Neutrino burst from SN 1987A detected in the Mont Blanc LSD experiment M. Aglietta et al.; 17. Toward observational neutrino astrophysics M. Koshiba; 18. The discovery of neutrinos from SN 1987A with the IMB detector J. Matthews; 19. Peering into the abyss: the neutrinos from SN 1987A A. Burrows; 20. Phenomenological analysis of neutrino emission from SN 1987A J. N. Bahcall, D. N. Spergel and W. H. Press; 21. Mass determination of neutrinos H. Y. Chiu; 22. Neutrino transport in a type II supernova D. C. Ellison, P. M. Giovanoni and S. W. Bruenn; 23. Neutrino masses from SN 1987A J. Franklin; 24. Supernova neutrinos and their oscillations T. K. Kuo and J. T. Pantaleone; 25. Neutrinos from SN 1987A and cooling of the nascent neutron star D. Q. Lamb, F. Melia and T. J. Loredo; 26. Neutrino Energetics of SN 1987A J. M. Lattimer and A. Yahil; 27. Neutrino emission from cooling neutron stars E. S. Myra, J. M. Lattimer and A. Yahil; 28. Statistical analysis of the time structure of the neutrinos from SN 1987A P. J. Schinder and S. A. Bludman; 29. Neutrino properties from observations of SN 1987A A. Dar; 30. SN 1987A and companion C. Papaliolios, M. Karovska, P. Nisenson, and C. Standley; 31. Supernovae light echoes B. E. Schaefer; 32. A real light echo: Nova Persei 1901 J. E. Felten; 33. IR speckle- interferometry of SN 1987A A. A. Chalabaev, C. Perrier and J. M. Mariotti; 34. Infrared opportunities for Supernova 1987A E. Dwek; 35. The UV interstellar spectrum and environment of SN 1987A F. C. Bruhweiler; 36. The interstellar spectrum of SN 1987A in the ultraviolet J. C. Blades, J. M. Wheatley, N. Panagia, M. Grewing, M. Pettini and W. Wamsteker; 37. The structure and spectrum of SN 1987A J. C. Wheeler, R. P. Harkness, and Z. Barkat; 38. Supernova 1987A: constraints on the theoretical model K. Nomoto and T. Shigeyama; 39. Supernova 1987A: a model and its predictions S. E. Woosley; 40. SN 1987A: circumstellar and interstellar interaction R. A. Chevalier; 41. Theoretical models of Supernova 1987A W. D. Arnett; 42. Evolution of the stellar progenitor of Supernova 1987A J. W. Truran and A. Weiss; 43.Modelling the atmosphere of SN 1987A L. B. Lucy; 44. SN 1987A: a stripped asymptotic- branch giant in a binary system P. C. Joss, Ph. Podsiadlowski, J. J. L. Hsu and S. Rappaport; 45. Pulsar formation and the fall back mass fraction S. A. Colgate; 46. An unusual hard X-ray source in the region of SN 19

SN 1987A - The evolution from red to blue

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tuchman, Y.; Wheeler, J.C.

1989-11-01

Envelope models in thermal and dynamic equilibrium are used to explore the nature of the transition of SK -69 deg 202, the progenitor of SN 1987A, from the Hayashi track to its final blue position in the H-R diagram. Loci of possible thermal equilibrium solutions are presented as a function of Teff and M(C/O), the mass of the carbon/oxygen core interior to the helium burning shell. It is found that uniform helium enrichment of the envelope results in red-blue evolution but that the resulting blue solution is much hotter than SK -69 deg 202. Solutions in which the only changemore » is to redistribute the portion of the envelope enriched in helium during main-sequence convective core contraction into a step function with Y of about 0.5 at a mass cut of about 10 solar masses give a natural transition from red to blue and a final value of Teff in agreement with observations. It is argued that SK -69 deg 202 probably fell on a post-Hayashi track sequence at moderate Teff. The possible connection of this sequence to the step distribution in the H-R diagram of the LMC. 19 refs.« less

Nurse Middle-Managers: The Relationship of Managerial Motivation to Academic Education, Leadership Training, and Success Potential

DTIC Science & Technology

1992-05-12

compared to an untested one. The quasi-experinmtal design with nonequivalent comparison groups included leadership training between pre and posttests...experimental, pretest-posttest, nonequivalent comparison groups (Wave A & Wave B) design . It allowed investigation of the influence of leadership training on...provided comparison groups . According to Burns and Grove (1987), pretest-posttest designs have inherent threats to validity. Pretest administration

Interannual heavy element and nutrient concentration trends in the top sediments of Venice Lagoon (Italy).

PubMed

Masiol, Mauro; Facca, Chiara; Visin, Flavia; Sfriso, Adriano; Pavoni, Bruno

2014-12-15

The elemental composition of surficial sediments of Venice Lagoon (Italy) in 1987, 1993, 1998 and 2003 were investigated. Zn and Cr concentrations resulted in higher than background levels, but only Cd and Hg were higher than legal quality standards (Italian Decree 2010/260 and Water Framework Directive 2000/60/EC). Contaminants with similar spatial distribution are sorted into three groups by means of correlation analysis: (i) As, Co, Cd, Cu, Fe, Pb, Zn; (ii) Ni, Cr; (iii) Hg. Interannual concentrations are compared by applying a factor analysis to the matrix of differences between subsequent samplings. A general decrease of heavy metal levels is observed from 1987 to 1993, whereas particularly high concentrations of Ni and Cr are recorded in 1998 as a consequence of intense clam fishing, subsequently mitigated by better prevention of illegal harvesting. Due to the major role played by anthropogenic sediment resuspension, bathymetric variations are also considered. Copyright © 2014 Elsevier Ltd. All rights reserved.

Pure Perceptual-Based Sequence Learning: A Role for Visuospatial Attention

ERIC Educational Resources Information Center

Remillard, Gilbert

2009-01-01

Learning the structure of a sequence of target locations when target location is not the response dimension and the sequence of target locations is uncorrelated with the sequence of responses is called pure perceptual-based sequence learning. The paradigm introduced by G. Remillard (2003) was used to determine whether orienting of visuospatial…

Population Development of Pasteuria penetrans on Meloidogyne arenaria.

PubMed

Oostendorp, M; Dickson, D W; Mitchell, D J

1991-01-01

A microplot study on the influence of cropping sequences with peanut in summer and bare fallowed or cover crops of rye or vetch in winter on the population development of Pasteuria penetrans was initiated in the spring of 1987. The number of spores of P. penetrans attached per second-stage juvenile of Meloidogyne arenaria race 1 increased from 0.11 in the fall of 1987 to 7.6, 8.6, and 3.6 in the fall of 1989 in the rye, vetch, and fallowed plots, respectively. Higher (P

Alkylation of an active-site cysteinyl residue during substrate-dependent inactivation of Escherichia coli S-adenosylmethionine decarboxylase.

PubMed

Diaz, E; Anton, D L

1991-04-23

S-Adenosylmethionine decarboxylase from Escherichia coli is a member of a small class of enzymes that uses a pyruvoyl prosthetic group. The pyruvoyl group is proposed to form a Schiff base with the substrate and then act as an electron sink facilitating decarboxylation. We have previously shown that once every 6000-7000 turnovers the enzyme undergoes an inactivation that results in a transaminated pyruvoyl group and the formation of an acrolein-like species from the methionine moiety. The acrolein then covalently alkylates the enzyme [Anton, D. L., & Kutny, R. (1987) Biochemistry 26, 6444]. After reduction of the alkylated enzyme with NaBH4, a tryptic peptide with the sequence Ala-Asp-Ile-Glu-Val-Ser-Thr-[S-(3-hydroxypropyl)Cys]-Gly-Val-Ile-Ser-Pro - Leu-Lys was isolated. This corresponds to acrolein alkylation of a cysteine residue in the second tryptic peptide from the NH2 terminal of the alpha-subunit [Anton, D. L., & Kutny, R. (1987) J. Biol. Chem. 262, 2817-2822]. The modified residue derived is from Cys-140 of the proenzyme [Tabor, C. W., & Tabor, H. (1987) J. Biol. Chem. 262, 16037-16040] and lies in the only sequence conserved between rat liver and E. coli S-adenosylmethionine decarboxylase [Pajunen et al. (1988) J. Biol. Chem. 263, 17040-17049]. We suggest that the alkylated Cys residue could have a role in the catalytic mechanism.

Supernova 1987A - the evolution from blue to red

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tuchman, Y.; Wheeler, J.C.

1989-09-01

The evolution of stars with mass comparable to that of the progenitor of SN 1987A from the main sequence to the Hayashi track is critically examined to determine why some models evolve to the red on nuclear time scales, some on thermal time scales, and some not at all. Thermal equilibrium solutions to a parametrized series of structural models with active hydrogen burning shells have two stable solutions with different T(eff) for the same helium core M(He) mass and a minimum M(He) below which no blue thermal equlibrium solution is possible. The dependence of the equilibrium solutions on stellar mass,more » envelope composition, and mass loss are investigated. The solutions quantitatively account for the 'gap' in the HR diagrams of massive stars in the Galaxy and LMC and suggest that the outer envelopes are not substantially enriched in helium during the first passage from the main sequence to the Hayashi track. 23 refs.« less

Statistical comparisons of AGDISP prediction with Mission III data

Treesearch

Baozhong Duan; Karl Mierzejewski; William G. Yendol

1991-01-01

Statistical comparison of AGDISP prediction were made against data obtained during aerial spray field trials ("Mission III") conducted in March 1987 at the APHIS Facility, Moore Air Base, Edinburg, Texas, by the NEFAAT group (Northeast Forest Aerial Application Technology). Seven out of twenty one runs were observed and predicted means (O and P), mean bias...

A comparison of 2 techniques for estimating deer density

USGS Publications Warehouse

Storm, G.L.; Cottam, D.F.; Yahner, R.H.; Nichols, J.D.

1977-01-01

We applied mark-resight and area-conversion methods to estimate deer abundance at a 2,862-ha area in and surrounding the Gettysburg National Military Park and Eisenhower National Historic Site during 1987-1991. One observer in each of 11 compartments counted marked and unmarked deer during 65-75 minutes at dusk during 3 counts in each of April and November. Use of radio-collars and vinyl collars provided a complete inventory of marked deer in the population prior to the counts. We sighted 54% of the marked deer during April 1987 and 1988, and 43% of the marked deer during November 1987 and 1988. Mean number of deer counted increased from 427 in April 1987 to 582 in April 1991, and increased from 467 in November 1987 to 662 in November 1990. Herd size during April, based on the mark-resight method, increased from approximately 700-1,400 from 1987-1991, whereas the estimates for November indicated an increase from 983 for 1987 to 1,592 for 1990. Given the large proportion of open area and the extensive road system throughout the study area, we concluded that the sighting probability for marked and unmarked deer was fairly similar. We believe that the mark-resight method was better suited to our study than the area-conversion method because deer were not evenly distributed between areas suitable and unsuitable for sighting within open and forested areas. The assumption of equal distribution is required by the area-conversion method. Deer marked for the mark-resight method also helped reduce double counting during the dusk surveys.

Identification of Protective Brucella Antigens and their Expressions in Vaccinia Virus to Prevent Disease in Animals and Humans.

DTIC Science & Technology

1996-05-01

see figure appendix; B. abortus sequence in similarity arrangement with secD of E.coli, H. influenzae, M. leprae and S. coelicalor). Highly related...low similarity (E. coil and M. leprae approx 13.5% similarity). The Brucella and E. coil sequences were 25% similar (see figures appendix). In E...1987. Micobacterial growth inhibition by interferon-g activated bone marrow macrophages and differential susceptibility among strains of Mycobacterium

Nucleotide sequence of wild-type hepatitis A virus GBM in comparison with two cell culture-adapted variants.

PubMed Central

Graff, J; Normann, A; Feinstone, S M; Flehmig, B

1994-01-01

In order to study cell tropism and attenuation of hepatitis A virus (HAV), the genome of HAV wild-type GBM and two cell culture-adapted variants, GBM/FRhK and GBM/HFS, were cloned and sequenced after amplification by reverse transcriptase-PCR. During virus cultivation, the HAV variant GBM/FRhK had a strict host range for FRhK-4 cells, in contrast to GBM/HFS, which can be grown in HFS and FRhK-4 cells. The HAV variant GBM/HFS was shown to be attenuated when inoculated into chimpanzees (B. Flehmig, R. F. Mauler, G. Noll, E. Weinmann, and J. P. Gregerson, p. 87-90, in A. Zuckerman, ed., Viral Hepatitis and Liver Disease, 1988). On the basis of this biological background, the comparison of the nucleotide sequences of these three HAV GBM variants should elucidate differences which may be of importance for cell tropism and attenuation. The comparison of the genome between the GBM wild type and HAV wild types HM175 (J. I. Cohen, J. R. Ticehurst, R. H. Purcell, A. Buckler-White, and B. M. Baroudy, J. Virol. 61:50-59, 1987) and HAV-LA (R. Najarian, O. Caput, W. Gee, S. J. Potter, A. Renard, J. Merryweather, G. Van Nest, and D. Dina, Proc. Natl. Acad. Sci. USA 82:2627-2631, 1985) showed a 92 to 96.3% identity, whereas the identity was 99.3 to 99.6% between the GBM variants. Nucleotide differences between the wild-type and the cell culture-adapted variants, which were identical in both cell culture-adapted GBM variants, were localized in the 5' noncoding region; in 2B, 3B, and 3D; and in the 3' noncoding region. Our result concerning the 2B/2C region confirms a mutation at position 3889 (C-->T, alanine to valine), which had been shown to be of importance for cell culture adaptation (S. U. Emerson, C. McRill, B. Rosenblum, S. M. Feinstone, and R. H. Purcell, J. Virol. 65:4882-4886, 1991; S. U. Emerson, Y. K. Huang, C. McRill, M. Lewis, and R. H. Purcell, J. Virol. 66:650-654, 1992), whereas other mutations differ from published HAV sequence data and may be cell specific. Further comparison of the two cell culture-adapted GBM variants showed cell-specific mutations resulting in deletions of six amino acids in the VP1 region and three amino acids in the 3A region of the GBM variant GBM/FRhK. PMID:8254770

Neural Tube Defects in Costa Rica, 1987–2012: Origins and Development of Birth Defect Surveillance and Folic Acid Fortification

PubMed Central

de la Paz Barboza-Argüello, María; Umaña-Solís, Lila M.; Azofeifa, Alejandro; Valencia, Diana; Flores, Alina L.; Rodríguez-Aguilar, Sara; Alfaro-Calvo, Thelma; Mulinare, Joseph

2015-01-01

Our aim was to provide a descriptive overview of how the birth defects surveillance and folic acid fortification programs were implemented in Costa Rica—through the establishment of the Registry Center for Congenital Anomalies (Centro de Registro de Enfermedades Congénitas—CREC), and fortification legislation mandates. We estimated the overall prevalence of neural tube defects (i.e., spina bifida, anencephaly and encephalocele) before and after fortification captured by CREC. Prevalence was calculated by dividing the total number of infants born with neural tube defects by the total number of live births in the country (1987–2012).A total of 1,170 newborns with neural tube defects were identified from 1987 to 2012 (1992–1995 data excluded); 628 were identified during the baseline pre-fortification period (1987–1991; 1996–1998); 191 during the fortification period (1999–2002); and 351 during the post-fortification time period (2003–2012). The overall prevalence of neural tube defects decreased from 9.8 per 10,000 live-births (95 % CI 9.1–10.5) for the pre-fortification period to 4.8 per 10,000 live births (95 % CI 4.3–5.3) for the post–fortification period. Results indicate a statistically significant (P < 0.05) decrease of 51 % in the prevalence of neural tube defects from the pre-fortification period to the post-fortification period. Folic acid fortification via several basic food sources has shown to be a successful public health intervention for Costa Rica. Costa Rica’s experience can serve as an example for other countries seeking to develop and strengthen both their birth defects surveillance and fortification programs. PMID:24952876

Trends in leisure time and work-related physical activity in the Spanish working population, 1987-2006.

PubMed

Alonso-Blanco, Cristina; Palacios-Ceña, Domingo; Hernández-Barrera, Valentín; Carrasco-Garrido, Pilar; Jiménez-García, Rodrigo; Fernández-de-Las-Peñas, César

2012-01-01

To analyze time trends in the prevalence of leisure time (LTPA) and work-related (WRPA) physical activity between 1987 and 2006 in the Spanish working population. We analyzed data taken from the Spanish National Health Surveys for 1987 (n = 29,647), 1993 (n = 20,707), 1995-1997 (n = 12,800), 2001 (n = 21,058), 2003 (n = 21,650), and 2006 (n = 29,478). The main variables were LTPA and WRPA in working adults aged 18-64 years old. We analyzed sociodemographic characteristics, self-perceived health status, lifestyle habits and associated comorbidities using multivariate logistic regression models. The prevalences of LTPA and WRPA were lower in women than in men (p < 0.05). The practice of LTPA (OR: 1.54, 95%CI: 1.32-1.80 for women; OR = 1.15, 95%CI: 1.02-1.31 for men) and WRPA (OR = 1.73, 95%CI: 1.38-2.19 for women; OR = 1.55, 95%CI: 1.44-1.91 for men) significantly increased from 1987 to 2006. In both genders, the variables associated with a higher likelihood of practicing LTPA were greater age, higher educational level and being an ex- or non-smoker, while negative predictors included being married, worse self-perceived health, and obesity. Factors that increased the probability of reporting WRPA were being married, worse self-rated health status, and sleeping > 8h per day. The only factor that reduced the probability of reporting WRPA was being an ex- or non-smoker. We found an increase in LTPA and WRPA in the last 20 years in the Spanish working population. Several factors were associated with a higher or lower likelihood of practicing LTPA or WRPA in this population. Copyright © 2011 SESPAS. Published by Elsevier Espana. All rights reserved.

Neural tube defects in Costa Rica, 1987-2012: origins and development of birth defect surveillance and folic acid fortification.

PubMed

Barboza-Argüello, María de la Paz; Umaña-Solís, Lila M; Azofeifa, Alejandro; Valencia, Diana; Flores, Alina L; Rodríguez-Aguilar, Sara; Alfaro-Calvo, Thelma; Mulinare, Joseph

2015-03-01

Our aim was to provide a descriptive overview of how the birth defects surveillance and folic acid fortification programs were implemented in Costa Rica-through the establishment of the Registry Center for Congenital Anomalies (Centro de Registro de Enfermedades Congénitas-CREC), and fortification legislation mandates. We estimated the overall prevalence of neural tube defects (i.e., spina bifida, anencephaly and encephalocele) before and after fortification captured by CREC. Prevalence was calculated by dividing the total number of infants born with neural tube defects by the total number of live births in the country (1987-2012).A total of 1,170 newborns with neural tube defects were identified from 1987 to 2012 (1992-1995 data excluded); 628 were identified during the baseline pre-fortification period (1987-1991; 1996-1998); 191 during the fortification period (1999-2002); and 351 during the post-fortification time period (2003-2012). The overall prevalence of neural tube defects decreased from 9.8 per 10,000 live-births (95 % CI 9.1-10.5) for the pre-fortification period to 4.8 per 10,000 live births (95 % CI 4.3-5.3) for the post-fortification period. Results indicate a statistically significant (P < 0.05) decrease of 51 % in the prevalence of neural tube defects from the pre-fortification period to the post-fortification period. Folic acid fortification via several basic food sources has shown to be a successful public health intervention for Costa Rica. Costa Rica's experience can serve as an example for other countries seeking to develop and strengthen both their birth defects surveillance and fortification programs.

Surveillance of human influenza A(H3N2) virus from 1999 to 2009 in southern Italy.

PubMed

DE Donno, A; Idolo, A; Quattrocchi, M; Zizza, A; Gabutti, G; Romano, A; Grima, P; Donatelli, I; Guido, M

2014-05-01

The aim of this study was to evaluate the presence of influenza virus co-infections in humans and changes in the genetic variability of A(H3N2) virus strains in southern Italy from 1999 to 2009. A partial sequence of the haemagglutinin (HA) gene by human influenza H3N2 strains identified in oropharyngeal swabs from patients with influenza-like illness was analysed by DNA sequencing and a phylogenetic analysis was performed. During the seasons 1999-2000, 2002-2003, 2004-2005 and 2008-2009, the influenza viruses circulating belonged to subtype H3N2. However, A(H1N1) subtype virus and B type were respectively prevalent during the 2000-2001, 2006-2007, 2007-2008 and 2001-2002, 2003-2004, 2005-2006 seasons. The HA sequences appeared to be closely related to the sequence of the influenza A vaccine strain. Only the 2002-2003 season was characterized by co-circulation of two viral lineages: A/New York/55/01(H3N2)-like virus of the previous season and A/Fujian/411/02(H3N2)-like virus, a new H3 variant. In this study, over the decade analysed, no significant change was seen in the sequences of the HA gene of H3 viruses isolated.

Environmental surveillance at Los Alamos during 1987

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1988-05-01

This report describes the environmental surveillance program conducted by Los Alamos National Laboratory during 1987. Routine monitoring for radiation and radioactive or chemical materials is conducted on the Laboratory site as well as in the surrounding region. Monitoring results are used to determine compliance with appropriate standards and to permit early identification of potentially undesirable trends. Results and interpretation of data for 1987 cover: external penetrating radiation; quantities of airborne emissions and liquid effluents; concentrations of chemicals and radionuclides in ambient air, surface and ground waters, municipal water supply, soils and sediments, and foodstuffs; and environmental compliance. Comparisons with appropriatemore » standards, regulations, and background levels provide the basis for concluding that environmental effects from Laboratory operations are insignificant and do not pose a threat to the public, Laboratory employees, or the environment. 113 refs., 33 figs., 120 tabs.« less

The Duke Elder Lecture: The challenge of equitable eye care in Pakistan

PubMed Central

Khan, M D

2011-01-01

Purpose Pakistan, like many other developing countries, is caught in the vicious cycle of poverty, illiteracy, violence, and disease. Right from its inception, it has been facing serious challenges of fast growing population, longevity, unemployment, wars, floods, double burden of diseases including blindness, as well as earthquakes, insurgencies, and political instability. Despite such challenges, the country has managed to reduce the burden of blindness from 1.78% in 1987-88 to 0.9% in 2003.This paper will highlight the methods used to achieve such a difficult goal. Methods The country used the report of the World Health Organization (WHO) temporary consultant as the initial tool for advocacy to obtain political and professional commitment. Results from the first National Blindness Survey 1987–1990 were used as baseline for development of the programme. Under the Ministry of Health, national and provincial committees with respective coordinators were constituted. To ensure access and equity, the national programme was developed on the basis of district comprehensive eye care services. The concept was carefully tested in a laboratory and then piloted in a real district before it was rolled over to the country. Strong national institutes for human resource development, research and development, and service delivery were established. A strong network of high-quality national institutes was set up and run by powerful national non-governmental organizations. The second National Blindness Survey evaluated the achievements of the programme in 2001–2003. Conclusion National prevalence of blindness was reduced by 100% by improving the uptake of services at the district level, especially by females. PMID:21252948

The Duke Elder lecture: the challenge of equitable eye care in Pakistan.

PubMed

Khan, M D

2011-04-01

Pakistan, like many other developing countries, is caught in the vicious cycle of poverty, illiteracy, violence, and disease. Right from its inception, it has been facing serious challenges of fast growing population, longevity, unemployment, wars, floods, double burden of diseases including blindness, as well as earthquakes, insurgencies, and political instability. Despite such challenges, the country has managed to reduce the burden of blindness from 1.78% in 1987-88 to 0.9% in 2003.This paper will highlight the methods used to achieve such a difficult goal. The country used the report of the World Health Organization (WHO) temporary consultant as the initial tool for advocacy to obtain political and professional commitment. Results from the first National Blindness Survey 1987-1990 were used as baseline for development of the programme. Under the Ministry of Health, national and provincial committees with respective coordinators were constituted. To ensure access and equity, the national programme was developed on the basis of district comprehensive eye care services. The concept was carefully tested in a laboratory and then piloted in a real district before it was rolled over to the country. Strong national institutes for human resource development, research and development, and service delivery were established. A strong network of high-quality national institutes was set up and run by powerful national non-governmental organizations. The second National Blindness Survey evaluated the achievements of the programme in 2001-2003. National prevalence of blindness was reduced by 100% by improving the uptake of services at the district level, especially by females.

Using bald eagles to track spatial (1999-2008) and temporal (1987-1992, 1999-2003, and 2004-2008) trends of contaminants in Michigan's aquatic ecosystems.

PubMed

Wierda, Michael R; Leith, Katherine F; Roe, Amy S; Grubb, Teryl G; Sikarskie, James G; Best, David A; Pittman, H Tyler; Fuentes, Latice; Simon, Kendall L; Bowerman, William

2016-08-01

The bald eagle (Haliaeetus leucocephalus) is an extensively researched tertiary predator. Studies have delineated information about its life history and the influences of various stressors on its reproduction. Due to the bald eagle's position at the top of the food web, it is susceptible to biomagnification of xenobiotics. The Michigan Department of Environmental Quality implemented a program in 1999 to monitor persistent chemicals including polychlorinated biphenols (PCBs) and dichlorodiphenyltrichloroethane (DDE). The objectives of the present study were to evaluate spatial and temporal trends of PCBs and organochlorine pesticides in nestling bald eagles of Michigan. The authors' study found that concentrations of PCBs and DDE were higher in Great Lakes areas with Lakes Michigan and Lake Huron having the highest concentrations of DDE and Lake Erie having the highest concentrations of PCBs. Temporally (1987-1992, 1999-2003, and 2004-2008) the present study found declines in PCB and DDE concentrations with a few exceptions. Continued monitoring of Michigan bald eagle populations is suggested for a couple of reasons. First, nestling blood contaminant levels are an appropriate method to monitor ecosystem contaminant levels. Second, from 1999 to 2008 PCB and DDE concentrations for 30% and 40%, respectively, of the nestling eagles sampled were above the no observable adverse effect level (NOAEL) for bald eagles. Lastly, with the continued development and deployment of new chemistries a continuous long term monitoring program is an invaluable resource. Environ Toxicol Chem 2016;35:1995-2002. © 2016 SETAC. © 2016 SETAC.

Prevalence of Candida bracarensis and Candida nivariensis in a Spanish collection of yeasts: comparison of results from a reference centre and from a population-based surveillance study of candidemia.

PubMed

Cuenca-Estrella, M; Gomez-Lopez, A; Isla, G; Rodriguez, D; Almirante, B; Pahissa, A; Rodriguez-Tudela, J L

2011-07-01

Two new species related to Candida glabrata, i.e., Candida nivariensis and Candida bracarensis, have been proposed. The occurrence of these species among isolates collected in a Spanish mycology reference laboratory in 2008-2009 was reviewed. In addition, strains recovered as part of an active population-based surveillance of candidemia conducted in Barcelona between 2002 and 2003 were also analyzed. Among 143 clinical isolates received in 2008-2009, three (2%) were identified as C. bracarensis and none as C. nivariensis through sequencing of their ribosomal DNA. Of the 31 strains initially identified as C. glabrata in the 2002-2003 population-based study (0.38 cases/100,000 population), none were found to belong to these related new species. Results from in vitro susceptibility studies of C. bracarensis isolates were comparable to those found with C. glabrata. Since new and cryptic species have been described, periodic surveillance including the use of molecular identification methods seems to be necessary in order to determine their frequency, geographical distribution and susceptibility profile.

Molecular Biology of the Extremely Thermophilic Archaebacterium, Methanothermus Fervidus.

DTIC Science & Technology

1988-04-15

have sequenced the- 5S rRNA gene and part of the 16SrRNA gene from one of these clusters. The 5SrRNA shows features typical of all archaebacteria and is...gene sequence in all three biological kingdoms and the status of M. thermoautotrophicum. In: Proc. Fifth International Symposium on Microbial Growth on...Cl-Compounds. ed. van Verseveld, H.W. and Duine, J.A. pp. 255-260. 2. Reeve, J.N., Beckler, G.S. and Cram, D.S. 1987. Methanogens are archaebacteria

Residential exposure to extremely low-frequency magnetic fields and risk of childhood leukaemia, CNS tumour and lymphoma in Denmark.

PubMed

Pedersen, Camilla; Johansen, Christoffer; Schüz, Joachim; Olsen, Jørgen H; Raaschou-Nielsen, Ole

2015-11-03

We previously reported that children exposed to elevated extremely low-frequency magnetic fields (ELF-MF) had a five to six times higher risk of leukaemia, central nervous system (CNS) tumour and malignant lymphoma. Here we extend the study from 1968 to 1986 through 2003. We included 3277 children with leukaemia, CNS tumour or malignant lymphoma during 1968-2003 recorded in the Danish Cancer Registry and 9129 controls randomly selected from the Danish childhood population. ELF-MF from 50 to 400 kV facilities were calculated at the residences. For recently diagnosed cases (1987-2003), the relative risk (RR) was 0.88 (95% confidence interval (CI): 0.32-2.42), while for the total period (1968-2003) it was 1.63 (95% CI: 0.77-3.46) for leukaemia, CNS tumour and malignant lymphoma combined for exposures ⩾0.4 μT compared with <0.1 μT. These results were based on five cases (recent period) and 11 cases (total period) in the highest exposure group. We did not confirm the previous finding of a five- to six-fold higher risk for leukaemia, CNS tumour and malignant lymphoma when including data from the more recent time period. For the total time period, the results for childhood leukaemia were in line with large pooled analyses showing RRs between 1.5 and 2.

Sulfur Dioxide Emission Rates from Kilauea Volcano, Hawai`i, an Update: 2002-2006

USGS Publications Warehouse

Elias, Tamar; Sutton, A.J.

2007-01-01

Introduction Sulfur dioxide (SO2) emission rates from Kilauea Volcano were first measured by Stoiber and Malone (1975) and have been measured on a regular basis since 1979 (Greenland and others, 1985; Casadevall and others, 1987; Elias and others, 1998; Sutton and others, 2001, Elias and Sutton, 2002, Sutton and others, 2003). Compilations of SO2 emission-rate and wind-vector data from 1979 through 2001 are available on the web. (Elias and others, 1998 and 2002). This report updates the database through 2006, and documents the changes in data collection and processing that have occurred during the interval 2002-2006. During the period covered by this report, Kilauea continued to release SO2 gas predominantly from its summit caldera and east rift zone (ERZ) (Elias and others, 1998; Sutton and others, 2001, Elias and others, 2002, Sutton and others, 2003). These two distinct sources are always measured independently (fig.1). Sulphur Banks is a minor source of SO2 and does not contribute significantly to the total emissions for Kilauea (Stoiber and Malone, 1975). From 1979 until 2003, summit and east rift zone emission rates were derived using vehicle- and tripod- based Correlation Spectrometry (COSPEC) measurements. In late 2003, we began to augment traditional COSPEC measurements with data from one of the new generation of miniature spectrometer systems, the FLYSPEC (Horton and others, 2006; Elias and others, 2006, Williams-Jones and others, 2006).

MEETING: Chlamydomonas Annotation Jamboree - October 2003

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grossman, Arthur R

2007-04-13

Shotgun sequencing of the nuclear genome of Chlamydomonas reinhardtii (Chlamydomonas throughout) was performed at an approximate 10X coverage by JGI. Roughly half of the genome is now contained on 26 scaffolds, all of which are at least 1.6 Mb, and the coverage of the genome is ~95%. There are now over 200,000 cDNA sequence reads that we have generated as part of the Chlamydomonas genome project (Grossman, 2003; Shrager et al., 2003; Grossman et al. 2007; Merchant et al., 2007); other sequences have also been generated by the Kasuza sequence group (Asamizu et al., 1999; Asamizu et al., 2000) ormore » individual laboratories that have focused on specific genes. Shrager et al. (2003) placed the reads into distinct contigs (an assemblage of reads with overlapping nucleotide sequences), and contigs that group together as part of the same genes have been designated ACEs (assembly of contigs generated from EST information). All of the reads have also been mapped to the Chlamydomonas nuclear genome and the cDNAs and their corresponding genomic sequences have been reassembled, and the resulting assemblage is called an ACEG (an Assembly of contiguous EST sequences supported by genomic sequence) (Jain et al., 2007). Most of the unique genes or ACEGs are also represented by gene models that have been generated by the Joint Genome Institute (JGI, Walnut Creek, CA). These gene models have been placed onto the DNA scaffolds and are presented as a track on the Chlamydomonas genome browser associated with the genome portal (http://genome.jgi-psf.org/Chlre3/Chlre3.home.html). Ultimately, the meeting grant awarded by DOE has helped enormously in the development of an annotation pipeline (a set of guidelines used in the annotation of genes) and resulted in high quality annotation of over 4,000 genes; the annotators were from both Europe and the USA. Some of the people who led the annotation initiative were Arthur Grossman, Olivier Vallon, and Sabeeha Merchant (with many individual annotators from Europe and the USA). Olivier Vallon has been most active in continued input of annotation information.« less

Molecular epidemiology of noroviruses associated with sporadic gastroenteritis in children in Novosibirsk, Russia, 2003-2012.

PubMed

Zhirakovskaia, Elena V; Tikunov, Artem Yu; Bodnev, Sergey A; Klemesheva, Vera V; Netesov, Sergey V; Tikunova, Nina V

2015-05-01

Noroviruses (NoVs) are an important cause of acute gastroenteritis worldwide. To monitor the molecular epidemiology of NoVs genogroup II (GII) in Novosibirsk, Russia, a total of 10,198 stool samples from young children hospitalized with acute gastroenteritis and two asymptomatic comparison groups were collected from 2003 to 2012. All samples were screened for the presence of NoV GII, rotavirus, and astrovirus by RT-PCR. The prevalence of NoV in gastroenteritis cases was 13.1%, varying from 7.1% to 21.3% in different seasons. Rotavirus and/or astrovirus were detectable in 25% of the NoV-positive samples. NoV was detected throughout the year with a seasonal increase during winter months. Based on sequence analysis of regions D and/or C within the VP1 gene, 892 identified NoV strains were divided into nine genotypes—GII.3 (51%), GII.4 (44%), GII.6 (2%), as well as GII.1, GII.2, GII.5, GII.7, GII.16, and GII.21 (totally, 3%). The prevalence of NoV in the comparison groups was considerably lower (∼2.5%); only GII.4 (n = 6), GII.21 (n = 2) and GII.1 (n = 1) genotypes were revealed. Based on phylogenetic analysis of the ORF1/ORF2 junction region sequences, GII.P21/GII.3 recombinant and GII.P4/GII.4 were prevalent genotypes (totally, 93%) and their ratio changed every season. The median age of children with NoV infection was 6.6 months (range, <1-35 months), but it was different depending on NoV genotype. Children infected with the NoV GII.3 were younger (median 6.2 months) than GII.4-positive patients (median 9.1 months). This is the first long-term systematic study of NoV molecular epidemiology in Russia. © 2015 Wiley Periodicals, Inc.

The Ciona intestinalis genome: when the constraints are off

NASA Technical Reports Server (NTRS)

Holland, Linda Z.; Gibson-Brown, Jeremy J.

2003-01-01

The recent genome sequencing of a non-vertebrate deuterostome, the ascidian tunicate Ciona intestinalis, makes a substantial contribution to the fields of evolutionary and developmental biology.1 Tunicates have some of the smallest bilaterian genomes, embryos with relatively few cells, fixed lineages and early determination of cell fates. Initial analyses of the C. intestinalis genome indicate that it has been evolving rapidly. Comparisons with other bilaterians show that C. intestinalis has lost a number of genes, and that many genes linked together in most other bilaterians have become uncoupled. In addition, a number of independent, lineage-specific gene duplications have been detected. These new results, although interesting in themselves, will take on a deeper significance once the genomes of additional invertebrate deuterostomes (e.g. echinoderms, hemichordates and amphioxus) have been sequenced. With such a broadened database, comparative genomics can begin to ask pointed questions about the relationship between the evolution of genomes and the evolution of body plans. Copyright 2003 Wiley Periodicals, Inc.

Identification of the regulatory autophosphorylation site of autophosphorylation-dependent protein kinase (auto-kinase). Evidence that auto-kinase belongs to a member of the p21-activated kinase family.

PubMed

Yu, J S; Chen, W J; Ni, M H; Chan, W H; Yang, S D

1998-08-15

Autophosphorylation-dependent protein kinase (auto-kinase) was identified from pig brain and liver on the basis of its unique autophosphorylation/activation property [Yang, Fong, Yu and Liu (1987) J. Biol. Chem. 262, 7034-7040; Yang, Chang and Soderling (1987) J. Biol. Chem. 262, 9421-9427]. Its substrate consensus sequence motif was determined as being -R-X-(X)-S*/T*-X3-S/T-. To characterize auto-kinase further, we partly sequenced the kinase purified from pig liver. The N-terminal sequence (VDGGAKTSDKQKKKAXMTDE) and two internal peptide sequences (EKLRTIV and LQNPEK/ILTP/FI) of auto-kinase were obtained. These sequences identify auto-kinase as a C-terminal catalytic fragment of p21-activated protein kinase 2 (PAK2 or gamma-PAK) lacking its N-terminal regulatory region. Auto-kinase can be recognized by an antibody raised against the C-terminal peptide of human PAK2 by immunoblotting. Furthermore the autophosphorylation site sequence of auto-kinase was successfully predicted on the basis of its substrate consensus sequence motif and the known PAK2 sequence, and was further demonstrated to be RST(P)MVGTPYWMAPEVVTR by phosphoamino acid analysis, manual Edman degradation and phosphopeptide mapping via the help of phosphorylation site analysis of a synthetic peptide corresponding to the sequence of PAK2 from residues 396 to 418. During the activation process, auto-kinase autophosphorylates mainly on a single threonine residue Thr402 (according to the sequence numbering of human PAK2). In addition, a phospho-specific antibody against a synthetic phosphopeptide containing this identified sequence was generated and shown to be able to differentially recognize the activated auto-kinase autophosphorylated at Thr402 but not the non-phosphorylated/inactive auto-kinase. Immunoblot analysis with this phospho-specific antibody further revealed that the change in phosphorylation level of Thr402 of auto-kinase was well correlated with the activity change of the kinase during both autophosphorylation/activation and protein phosphatase-mediated dephosphorylation/inactivation processes. Taken together, our results identify Thr402 as the regulatory autophosphorylation site of auto-kinase, which is a C-terminal catalytic fragment of PAK2.

Identification of the regulatory autophosphorylation site of autophosphorylation-dependent protein kinase (auto-kinase). Evidence that auto-kinase belongs to a member of the p21-activated kinase family.

PubMed Central

Yu, J S; Chen, W J; Ni, M H; Chan, W H; Yang, S D

1998-01-01

Autophosphorylation-dependent protein kinase (auto-kinase) was identified from pig brain and liver on the basis of its unique autophosphorylation/activation property [Yang, Fong, Yu and Liu (1987) J. Biol. Chem. 262, 7034-7040; Yang, Chang and Soderling (1987) J. Biol. Chem. 262, 9421-9427]. Its substrate consensus sequence motif was determined as being -R-X-(X)-S*/T*-X3-S/T-. To characterize auto-kinase further, we partly sequenced the kinase purified from pig liver. The N-terminal sequence (VDGGAKTSDKQKKKAXMTDE) and two internal peptide sequences (EKLRTIV and LQNPEK/ILTP/FI) of auto-kinase were obtained. These sequences identify auto-kinase as a C-terminal catalytic fragment of p21-activated protein kinase 2 (PAK2 or gamma-PAK) lacking its N-terminal regulatory region. Auto-kinase can be recognized by an antibody raised against the C-terminal peptide of human PAK2 by immunoblotting. Furthermore the autophosphorylation site sequence of auto-kinase was successfully predicted on the basis of its substrate consensus sequence motif and the known PAK2 sequence, and was further demonstrated to be RST(P)MVGTPYWMAPEVVTR by phosphoamino acid analysis, manual Edman degradation and phosphopeptide mapping via the help of phosphorylation site analysis of a synthetic peptide corresponding to the sequence of PAK2 from residues 396 to 418. During the activation process, auto-kinase autophosphorylates mainly on a single threonine residue Thr402 (according to the sequence numbering of human PAK2). In addition, a phospho-specific antibody against a synthetic phosphopeptide containing this identified sequence was generated and shown to be able to differentially recognize the activated auto-kinase autophosphorylated at Thr402 but not the non-phosphorylated/inactive auto-kinase. Immunoblot analysis with this phospho-specific antibody further revealed that the change in phosphorylation level of Thr402 of auto-kinase was well correlated with the activity change of the kinase during both autophosphorylation/activation and protein phosphatase-mediated dephosphorylation/inactivation processes. Taken together, our results identify Thr402 as the regulatory autophosphorylation site of auto-kinase, which is a C-terminal catalytic fragment of PAK2. PMID:9693111

Comparing the Similarities and Differences of PISA 2003 and TIMSS. OECD Education Working Papers, No. 32

ERIC Educational Resources Information Center

Wu, Margaret

2010-01-01

This paper makes an in-depth comparison of the PISA (OECD) and TIMSS (IEA) mathematics assessments conducted in 2003. First, a comparison of survey methodologies is presented, followed by an examination of the mathematics frameworks in the two studies. The methodologies and the frameworks in the two studies form the basis for providing…

Dynamics of the upper middle atmosphere (80-110 km) at Tromsoe, June-December 1987, using the Tromsoe/Saskatoon M.F. radar

NASA Technical Reports Server (NTRS)

Manson, A. H.; Meek, C. E.

1989-01-01

A real time winds (RTW) system from Saskatoon operated with the Tromsoe M.F. (partial reflection) radar on a continuous basis, June to December 1987. Profiles with 3 km resolution were obtained every 5 minutes with weak ionization, and few geomagnetic disturbances limited the observations normally to 80 to 110 km. However, daily mean winds, tidal characteristics (24, 12 h) such as amplitudes, phases and wavelengths, and gravity wave characteristics (intensities, mean directions) are available throughout this interval, which includes MAC-SINE and Epsilon. This is particularly valuable in defining the background state for some experiments, e.g., rockets, and for comparison with related parameters from the lidar and other radars (EISCAT, SOUSY-VHF). Comparisons with dynamical parameters from Saskatoon (52 N) are made: the zonal circulation was weaker at Tromsoe, tidal amplitudes smaller, and summer 12 h tidal wavelengths shorter (approx. 80 km vs approx. 100 km). The fall transition for this tide occurred in September, earlier than observed elsewhere. Initial comparisons with other experimental systems are also made.

A search for the millimetre lines of HCN in Comets Wilson 1987 VII and Machholz 1988 XV

NASA Astrophysics Data System (ADS)

Crouvisier, J.; Despois, D.; Bockelee-Morvan, D.; Gerard, E.; Paubert, G.; Johansson, L. E. B.; Ekelund, L.; Winnberg, A.; Ge, W.; Irvine, W. M.; Kinzel, W. M.; Schloerb, F. P.

1990-08-01

The J(1-0) lines of HCN at 89 GHz were searched for in Comet Wilson 1987 VII, with the FCRAO, the SEST and the IRAM radio telescopes between February and June 1987. There was no firm detection, but significant upper limits were obtained, which put severe constraints on the HCN production rate in that comet. A direct comparison with the observations of P/Halley suggests that the HCN abundance relative to water might be smaller in Comet Wilson by at least a factor of two. The J(1-0) and J(3-2) lines of HCN at 89 and 266 GHz were searched for in Comet Machholz 1988 XV when it was close to perihelion at 0.17 AU from the sun. There was no detection. At that moment, the comet was probably no longer active.

Characteristics of Professional Staff in California Public Schools: A Five-Year Comparison. Data Compiled from CBEDS, the California Basic Educational Data System.

ERIC Educational Resources Information Center

California State Dept. of Education, Sacramento.

This document provides the results of a 5-year comparison of characteristics of professional staff between the years of 1982-83 and 1987-88 in the California Public Schools. Professional staff members include all certificated personnel employed full-time or part-time and noncertificated personnel serving at the level of superintendent, deputy,…

Prop-fan noise propagation

DOT National Transportation Integrated Search

1989-02-07

This report summarizes studies of enroute propfan noise propagation involving noise data obtained by DOT/TSC at ground stations during fly-over tests on October 30-31, 1987. These data have been analsyzed by DOT/TSC for comparison with in flight data...

Outer crust of nonaccreting cold neutron stars

NASA Astrophysics Data System (ADS)

Rüster, Stefan B.; Hempel, Matthias; Schaffner-Bielich, Jürgen

2006-03-01

The properties of the outer crust of nonaccreting cold neutron stars are studied by using modern nuclear data and theoretical mass tables, updating in particular the classic work of Baym, Pethick, and Sutherland. Experimental data from the atomic mass table from Audi, Wapstra, and Thibault of 2003 are used and a thorough comparison of many modern theoretical nuclear models, both relativistic and nonrelativistic, is performed for the first time. In addition, the influences of pairing and deformation are investigated. State-of-the-art theoretical nuclear mass tables are compared to check their differences concerning the neutron drip line, magic neutron numbers, the equation of state, and the sequence of neutron-rich nuclei up to the drip line in the outer crust of nonaccreting cold neutron stars.

Land Subsidence and Aquifer-System Compaction in the Tucson Active Management Area, South-Central Arizona, 1987-2005

USGS Publications Warehouse

Carruth, Rob; Flynn, Pool; Donald, R.; Anderson, Carl E.

2007-01-01

The U.S. Geological Survey monitors land subsidence and aquifer-system compaction caused by ground-water depletion in Tucson Basin and Avra Valley - two of the three alluvial basins within the Tucson Active Management Area. In spring 1987, the Global Positioning System was used to measure horizontal and vertical positions for bench marks at 43 sites to establish a network for monitoring land subsidence in Tucson Basin and Avra Valley. Between 1987 and 2005, the original number of subsidence monitoring stations was gradually increased to more than 100 stations to meet the need for information in the growing metropolitan area. Data from approximately 60 stations common to the Global Positioning System surveys done after an initial survey in 1987 are used to document land subsidence. For the periods of comparison, average land-surface deformation generally is less than the maximum subsidence at an individual station and takes into account land-surface recovery from elastic aquifer-system compaction. Between 1987 and 1998, as much as 3.2 inches of subsidence occurred in Tucson Basin and as much as 4 inches of subsidence occurred in Avra Valley. For the 31 stations that are common to both the 1987 and 1998 Global Positioning System surveys, the average subsidence during the 11-year period was about 0.5 inch in Tucson Basin and about 1.2 inches in Avra Valley. For the approximately 60 stations that are common to both the 1998 and 2002 Global Positioning System surveys, the data indicate that as much as 3.5 inches of subsidence occurred in Tucson Basin and as much as 1.1 inches of subsidence occurred in Avra Valley. The average subsidence for the 4-year period is about 0.4 inch in Tucson Basin and 0.6 inch in Avra Valley. Between the 2002 and the 2005 Global Positioning System surveys, the data indicate that as much as 0.2 inch of subsidence occurred in Tucson Basin and as much as 2.2 inches of subsidence occurred in Avra Valley. The average subsidence for the 3-year period is about 0.7 inch in Avra Valley. Between 1987 and 2004-05, land subsidence was greater in Avra Valley than in Tucson Basin on the basis of the average cumulative subsidence for the stations that were common to the original Global Positioning System survey in 1987. The average total subsidence during the 17- to 18-year period was about 1.3 inches in Tucson Basin and about 2.8 inches in Avra Valley. Three stations in Tucson Basin showed subsidence greater than 4 inches for the period - 5 inches at stations C45 and X419 and 4.1 inches at station PA4. In Avra Valley, two stations showed subsidence for the 17- to 18-year period greater than 4 inches - 4.3 inches at station AV25 and 4.8 inches at station SA105. In 1983, fourteen wells were fitted with borehole extensometers to monitor water-level fluctuations and aquifer-system compaction. Continuous records of water level and aquifer-system compaction indicate that as much as 45 feet of water-level decline and 4 inches of aquifer-system compaction occurred in Tucson Basin from January 1989 through December, 2005. In Avra Valley, extensometer data indicate that as much as 55 feet of water-level decline and 1.7 inches of aquifer-system compaction occurred during the same time period. Rates of compaction vary throughout the extensometer network, with the greater rates of compaction being associated with areas of greater water-level decline and more compressible sediments. In Avra Valley, data from the Global Positioning System surveys indicate that more than half of the total subsidence of the land surface may be the result of aquifer-system compaction below the portion of the aquifer instrumented with the vertical extensometers. For the area in the northern part of Tucson Basin between the Rillito and Santa Cruz rivers, an Interferometric Synthetic Aperture Radar interferogram indicates that about 1.65 inches of subsidence occurred between 2003 and 2006. Between 2002 and 2004, the Global Positioning System

Equid herpesvirus 8: Complete genome sequence and association with abortion in mares

PubMed Central

Garvey, Marie; Suárez, Nicolás M.; Kerr, Karen; Hector, Ralph; Moloney-Quinn, Laura; Arkins, Sean; Davison, Andrew J.

2018-01-01

Equid herpesvirus 8 (EHV-8), formerly known as asinine herpesvirus 3, is an alphaherpesvirus that is closely related to equid herpesviruses 1 and 9 (EHV-1 and EHV-9). The pathogenesis of EHV-8 is relatively little studied and to date has only been associated with respiratory disease in donkeys in Australia and horses in China. A single EHV-8 genome sequence has been generated for strain Wh in China, but is apparently incomplete and contains frameshifts in two genes. In this study, the complete genome sequences of four EHV-8 strains isolated in Ireland between 2003 and 2015 were determined by Illumina sequencing. Two of these strains were isolated from cases of abortion in horses, and were misdiagnosed initially as EHV-1, and two were isolated from donkeys, one with neurological disease. The four genome sequences are very similar to each other, exhibiting greater than 98.4% nucleotide identity, and their phylogenetic clustering together demonstrated that genomic diversity is not dependent on the host. Comparative genomic analysis revealed 24 of the 76 predicted protein sequences are completely conserved among the Irish EHV-8 strains. Evolutionary comparisons indicate that EHV-8 is phylogenetically closer to EHV-9 than it is to EHV-1. In summary, the first complete genome sequences of EHV-8 isolates from two host species over a twelve year period are reported. The current study suggests that EHV-8 can cause abortion in horses. The potential threat of EHV-8 to the horse industry and the possibility that donkeys may act as reservoirs of infection warrant further investigation. PMID:29414990

Skin test hypersensitivity for childhood asthma in Istanbul during a period of 16 years.

PubMed

Akcakaya, N; Cokugras, H; Camcioglu, Y; Ozdemir, M

2005-01-01

For diagnosis of allergic disorders, besides history and physical examination, many in vivo and in vitro laboratory tests are used. Skin prick test (SPT) is an easily performed and valuable test in children. Our aim was to evaluate the SPT results of asthmatic children according to age and gender, in Istanbul and its neighborhood, followed for a period of 16 years. Consecutive 5080 asthmatic children, aged 1 to 18 years, admitted to Pediatric Allergy Policlinics of Istanbul University Cerrahpasa Medicine Faculty from 1987 to 2003, were screened retrospectively for 10 frequently exposed allergens. 3086 cases (61 %) had SPT reactivity for one and/or for multiple allergens; the SPT reactivity percentages of the exposed allergens was 50 % (2554 cases) for house dust mites DP, 49 % (2462 cases) for house dust mites DF, 15 % (784 cases) for cat dander, 10 % (525 cases) for dog dander, 4 % (228 cases) for lamb wool, 10 % (504 cases) for wheat, 3 % (162 cases) for egg white, 6 % (345 cases) for hazelnut pollen, 6 % (318 cases) for Candida Albicans, 6 % (326 cases) for Aspergillus Fumigatus. While house dust mites were determined as the predominant allergen for each age groups in this study, allergy against cat dander was the third important allergen in sequence, as cat is a domestic pet which is frequently kept at home in Turkey.

Medicare patients' use of overpriced procedures before and after the Omnibus Budget Reconciliation Act of 1987.

PubMed Central

Escarce, J J

1993-01-01

OBJECTIVES. Under the Omnibus Budget Reconciliation Act of 1987, Medicare reduced physician fees for 12 procedures identified as overprices. This paper describes trends in the use of these procedures and other physician services by Medicare patients during the 4-year period surrounding the implementation of the 1987 budget act. METHODS. Medicare physician claims files were used to develop trends in physician-services use from 1986 to 1989. Services were grouped into four categories: overpriced procedures, other surgery, medical care, and ancillary tests. RESULTS. Growth in the volume of overpriced procedures slowed substantially after the 1987 budget act was implemented. Moreover, the reduction in the rate of volume growth for these procedures differed little among specialities or areas. In comparison, the rate of volume growth fell modestly for other surgery, was unchanged for medical care, and increased for ancillary tests. CONCLUSIONS. Increases do not necessarily occur in the volume of surgical procedures whose Medicare fees are reduced. Although the conclusions that may be drawn from a descriptive analysis are limited, these findings suggest that concerns that the resource-based Medicare fee schedule will lead to higher surgery rates may be unwarranted. PMID:8438971

Genetic variability of wild-type measles viruses, circulating in the Russian Federation during the implementation of the National Measles Elimination Program, 2003-2007.

PubMed

Shulga, S V; Rota, P A; Kremer, J R; Naumova, M A; Muller, C P; Tikhonova, N T; Lopareva, E N; Mamaeva, T A; Tsvirkun, O V; Mulders, M N; Lipskaya, G Y; Gerasimova, A G

2009-06-01

Genetic characterization of wild-type measles viruses (MVs) is an important component of laboratory surveillance of measles. In this study, a phylogenetic analysis was performed of the nucleoprotein gene sequences of 228 MVs isolated in the Russian Federation between 2003 and 2007. Five genotypes, D4, D5, D6, D8, and H1, were detected. From 1999 through the first 6 months of 2003, the most prevalent genotype in the European part of Russia was D4. All genotype D4-type viruses were closely related to each other (with overall sequence diversity of

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

NASA Astrophysics Data System (ADS)

Takai, Daiya; Jones, Peter A.

2002-03-01

CpG islands are useful markers for genes in organisms containing 5-methylcytosine in their genomes. In addition, CpG islands located in the promoter regions of genes can play important roles in gene silencing during processes such as X-chromosome inactivation, imprinting, and silencing of intragenomic parasites. The generally accepted definition of what constitutes a CpG island was proposed in 1987 by Gardiner-Garden and Frommer [Gardiner-Garden, M. & Frommer, M. (1987) J. Mol. Biol. 196, 261-282] as being a 200-bp stretch of DNA with a C+G content of 50% and an observed CpG/expected CpG in excess of 0.6. Any definition of a CpG island is somewhat arbitrary, and this one, which was derived before the sequencing of mammalian genomes, will include many sequences that are not necessarily associated with controlling regions of genes but rather are associated with intragenomic parasites. We have therefore used the complete genomic sequences of human chromosomes 21 and 22 to examine the properties of CpG islands in different sequence classes by using a search algorithm that we have developed. Regions of DNA of greater than 500 bp with a G+C equal to or greater than 55% and observed CpG/expected CpG of 0.65 were more likely to be associated with the 5' regions of genes and this definition excluded most Alu-repetitive elements. We also used genome sequences to show strong CpG suppression in the human genome and slight suppression in Drosophila melanogaster and Saccharomyces cerevisiae. This finding is compatible with the recent detection of 5-methylcytosine in Drosophila, and might suggest that S. cerevisiae has, or once had, CpG methylation.

Infrared measurements of atmospheric gases above Mauna Loa, Hawaii, in February 1987

NASA Technical Reports Server (NTRS)

Rinsland, C. P.; Goldman, A.; Murcray, F. J.; Murcray, F. H.; Blatherwick, R. D.

1988-01-01

The IR absorptions spectra of 13 minor and trace atmospheric gases, recorded by the NOAA's Geophysical Monitoring for Climate Change (GMCC) program station at Mauna Loa, Hawaii, for four days in February 1987, were analyzed to determine simultaneous total vertical column amounts for these gases. Comparisons with other data indicate that the NOAA GMCC surface volume mixing ratios are good measures of the mean volume mixing ratios of these gases in the troposphere and that Mauna Loa is a favorable site for IR monitoring of atmospheric gases. The ozone total columns deduced from the IR spectra agreed with the correlative Umkehr observations.

Investigation of Antarctic Sea Ice Concentration by Means of Selected Algorithms

DTIC Science & Technology

1992-05-08

Changes in areal extent and concentration of sea ice around Antarctica may serve as sensitive indicators of global warming . A comparison study was...occurred from July, 1987 through June, 1990. Antarctic Ocean, Antarctic regions, Global warming , Sea ice-Antarctic regions.

Molecular Mechanisms of Cytopathogenicity of Primate Lymphotropic Retroviruses: Relevance to Treatment and Vaccine for Aids

DTIC Science & Technology

1990-08-10

Active Genome of HIV-2 (Meeting Abstract). Fourth International Conference on AIDS. Book II., 1988. Franchini, G., Kanki, P.J., Bosch, M.L., Fargnoli...Factors with the HTLV-IlI LTR Target Sequences In Vitro. Haematology and Blood Transfusion, Vol. 3i, pp. 423-429, 1987. Siekevitz, M., Josephs, S.F

Mapping Our Genes--The Genome Projects: How Big, How Fast?

ERIC Educational Resources Information Center

Congress of the U.S., Washington, DC. Office of Technology Assessment.

Scientific and technical journals in biology and medicine in recent years have extensively covered a debate about whether and how to determine the function and order of human genes on human chromosomes and when to determine the sequence of molecular building blocks that comprise DNA in those chromosomes. In 1987, these issues rose to become part…

Pay Equity Act (No. 34 of 1987), 29 June 1987.

PubMed

1987-01-01

This document contains major provisions of Ontario, Canada's 1987 Pay Equity Act. The Act seeks to redress systemic gender discrimination in compensation for work performed by employees in "female job classes" and applies to all private sector employers in Ontario with 10 or more employees, all public sector employers, and the employees of applicable employers. The Act continues to apply even if an employer subsequently reduces the number of employees below 10. The Act calls for identification of systemic gender discrimination in compensation through comparisons between female job classes and male job classes in terms of compensation and value of work performed, which is a composite of skill, effort, and responsibility normally required. Pay equity is deemed achieved when the job rate for the female job class is at least equal to the rate for a male job class in the same establishment. If there is no male job class to use for comparison, pay equity is achieved when the female job rate is at least equal to the job rate of a male job class in the same establishment that, at the time of comparison, had a higher job rate while performing work of lower value than the female job class. Differences in compensation between a female and a male job class are allowed if they result from a formal seniority system that does not discriminate on basis of gender, a temporary training or development assignment equally available to males and females, a specified merit compensation plan, actions taken as the result of a gender-neutral reevaluation process, or a skills shortage leading to a temporary inflation in compensation. Pay equity will not be achieved by reducing any employee's compensation. The Act establishes a Pay Equity Commission to oversee implementation.

Label-Free THz-Optoelectronic Sensing of Ultra-Low Concentration of Genetic Sequences: Theoretical Treatment

DTIC Science & Technology

2009-12-15

Two Ferrocenium and Two Ferrocene Complexes; J. Am. Chem. Soc.; (Communication); 125(25); 7522-7523(2003) [19] Braun-Sand, S. B.; Wiest, O.; Biasing...of Two Ferrocenium and Two Ferrocene Complexes ; J. Am. Chem. Soc.; (Communication); 2003; 125(25); 7522- 7523 [35]. Sonja B. Braun-Sand and Olaf

Comparison of Snow Mass Estimates from a Prototype Passive Microwave Snow Algorithm, a Revised Algorithm and a Snow Depth Climatology

NASA Technical Reports Server (NTRS)

Foster, J. L.; Chang, A. T. C.; Hall, D. K.

1997-01-01

While it is recognized that no single snow algorithm is capable of producing accurate global estimates of snow depth, for research purposes it is useful to test an algorithm's performance in different climatic areas in order to see how it responds to a variety of snow conditions. This study is one of the first to develop separate passive microwave snow algorithms for North America and Eurasia by including parameters that consider the effects of variations in forest cover and crystal size on microwave brightness temperature. A new algorithm (GSFC 1996) is compared to a prototype algorithm (Chang et al., 1987) and to a snow depth climatology (SDC), which for this study is considered to be a standard reference or baseline. It is shown that the GSFC 1996 algorithm compares much more favorably to the SDC than does the Chang et al. (1987) algorithm. For example, in North America in February there is a 15% difference between the GSFC 198-96 Algorithm and the SDC, but with the Chang et al. (1987) algorithm the difference is greater than 50%. In Eurasia, also in February, there is only a 1.3% difference between the GSFC 1996 algorithm and the SDC, whereas with the Chang et al. (1987) algorithm the difference is about 20%. As expected, differences tend to be less when the snow cover extent is greater, particularly for Eurasia. The GSFC 1996 algorithm performs better in North America in each month than dose the Chang et al. (1987) algorithm. This is also the case in Eurasia, except in April and May when the Chang et al.(1987) algorithms is in closer accord to the SDC than is GSFC 1996 algorithm.

Asymmetry in the Outburst of SN 1987A Detected Using Light Echo Spectroscopy

NASA Astrophysics Data System (ADS)

Sinnott, B.; Welch, D. L.; Rest, A.; Sutherland, P. G.; Bergmann, M.

2013-04-01

We report direct evidence for asymmetry in the early phases of SN 1987A via optical spectroscopy of five fields of its light echo system. The light echoes allow the first few hundred days of the explosion to be reobserved, with different position angles providing different viewing angles to the supernova. Light echo spectroscopy therefore allows a direct spectroscopic comparison of light originating from different regions of the photosphere during the early phases of SN 1987A. Gemini multi-object spectroscopy of the light echo fields shows fine structure in the Hα line as a smooth function of position angle on the near-circular light echo rings. Hα profiles originating from the northern hemisphere of SN 1987A show an excess in redshifted emission and a blue knee, while southern hemisphere profiles show an excess of blueshifted Hα emission and a red knee. This fine structure is reminiscent of the "Bochum event" originally observed for SN 1987A, but in an exaggerated form. Maximum deviation from symmetry in the Hα line is observed at position angles 16° and 186°, consistent with the major axis of the expanding elongated ejecta. The asymmetry signature observed in the Hα line smoothly diminishes as a function of viewing angle away from the poles of the elongated ejecta. We propose an asymmetric two-sided distribution of 56Ni most dominant in the southern far quadrant of SN 1987A as the most probable explanation of the observed light echo spectra. This is evidence that the asymmetry of high-velocity 56Ni in the first few hundred days after explosion is correlated to the geometry of the ejecta some 25 years later.

[Comparison of visual impairment caused by trachoma in China between 1978 and 2006].

PubMed

Hu, Ailian; Cai, Xiaogu; Qiao, Liya; Zhang, Ye; Zhang, Xu; Sun, Baochen; Wang, Ningli

2015-10-01

To understand the distribution of visual impairment caused by trachoma in China and provide evidences for evaluation of eliminating blinding trachoma in China in the mission of Vision 2020. Sampling study. The results from the first year 1987 and second (year 2006) national sampling surveys of disabled persons were analyzed. Chi-square test was performed using SAS 9.30 to analyze the rates of visual impairment caused by trachoma in different groups. Unifactor and multifactor analyses were applied to analyze the relevance between visual impairment caused by trachoma and risk factors, including gender and age. The rate of visual impairment caused by trachoma was 102.01 persons/100 000 in 1987 and 17.62 persons/100 000 in 2006. The percentage of trachoma in all kinds of visual impairment was 14.25% in 1987 and 1.87% in 2006, and the difference was significant (F = 1 382.6, P < 0.01). Spatial aggregation was obvious in visual impairment caused by trachoma. H-aggregation areas included Hubei, Sichuan, Anhui, Shannxi, Guizhou, Hunan provinces and Chongqing Municipality. Survival time without trachoma between 1987 and 2006 was significantly different (F = 2 745.9, P < 0.01). The rate and risk of visual impairment caused by trachoma increased with age. Except the group of > 85 years, the rate of visual impairment caused by trachoma in all age groups in 1987 was significantly higher than that in 2006. The risk of visual impairment caused by trachoma in 1987 was 5.8 times that in 2006. If the other risk factors were not involved, the risk in 1987 was 8.75 times that in 2006. The risk in females was twice that in males. Both, the rate and risk of visual impairment caused by trachoma were significantly reduced in China. Impressive progresses were achieved in trachoma prevention and control.

A Possible Geographic Origin of Endemic Hepatitis C Virus 6a in Hong Kong: Evidences for the Association with Vietnamese Immigration

PubMed Central

Zhou, Xiaoming; Chan, Paul K. S.; Tam, John S.; Tang, Julian W.

2011-01-01

Background Hepatitis C virus (HCV) 6a accounts for 23.6% of all HCV infections of the general population and 58.5% of intravenous drug users in Hong Kong. However, the geographical origin of this highly predominant HCV subgenotype is largely unknown. This study explores a hypothesis for one possible transmission route of HCV 6a to Hong Kong. Methods NS5A sequences derived from 26 HCV 6a samples were chosen from a five year period (1999–2004) from epidemiologically unrelated patients from Hong Kong. Partial-NS5A sequences (513-bp from nt 6728 to 7240) were adopted for Bayesian coalescent analysis to reconstruct the evolutionary history of HCV infections in Hong Kong using the BEAST v1.3 program. A rooted phylogenetic tree was drawn for these sequences by alignment with reference Vietnamese sequences. Demographic data were accessed from “The Statistic Yearbooks of Hong Kong”. Results Bayesian coalescent analysis showed that the rapid increase in 6a infections, which had increased more than 90-fold in Hong Kong from 1986 to 1994 correlated to two peaks of Vietnamese immigration to Hong Kong from 1978 to 1997. The second peak, which occurred from 1987 through 1997, overlapped with the rapid increase of HCV 6a occurrence in Hong Kong. Phylogenetic analyses have further revealed that HCV 6a strains from Vietnam may be ancestral to Hong Kong counterparts. Conclusions The high predominance of HCV 6a infections in Hong Kong was possibly associated with Vietnamese immigration during 1987–1997. PMID:21931867

A possible geographic origin of endemic hepatitis C virus 6a in Hong Kong: evidences for the association with Vietnamese immigration.

PubMed

Zhou, Xiaoming; Chan, Paul K S; Tam, John S; Tang, Julian W

2011-01-01

Hepatitis C virus (HCV) 6a accounts for 23.6% of all HCV infections of the general population and 58.5% of intravenous drug users in Hong Kong. However, the geographical origin of this highly predominant HCV subgenotype is largely unknown. This study explores a hypothesis for one possible transmission route of HCV 6a to Hong Kong. NS5A sequences derived from 26 HCV 6a samples were chosen from a five year period (1999-2004) from epidemiologically unrelated patients from Hong Kong. Partial-NS5A sequences (513-bp from nt 6728 to 7240) were adopted for Bayesian coalescent analysis to reconstruct the evolutionary history of HCV infections in Hong Kong using the BEAST v1.3 program. A rooted phylogenetic tree was drawn for these sequences by alignment with reference Vietnamese sequences. Demographic data were accessed from "The Statistic Yearbooks of Hong Kong". Bayesian coalescent analysis showed that the rapid increase in 6a infections, which had increased more than 90-fold in Hong Kong from 1986 to 1994 correlated to two peaks of Vietnamese immigration to Hong Kong from 1978 to 1997. The second peak, which occurred from 1987 through 1997, overlapped with the rapid increase of HCV 6a occurrence in Hong Kong. Phylogenetic analyses have further revealed that HCV 6a strains from Vietnam may be ancestral to Hong Kong counterparts. The high predominance of HCV 6a infections in Hong Kong was possibly associated with Vietnamese immigration during 1987-1997.

Changes in malnutrition and quality of nutritional care among aged residents in all nursing homes and assisted living facilities in Helsinki 2003-2011.

PubMed

Saarela, Riitta K T; Muurinen, Seija; Suominen, Merja H; Savikko, Niina N; Soini, Helena; Pitkälä, Kaisu H

2017-09-01

While nutritional problems have been recognized as common in institutional settings for several decades, less is known about how nutritional care and nutrition has changed in these settings over time. To describe and compare the nutritional problems and nutritional care of residents in all nursing homes (NH) in 2003 and 2011 and residents in all assisted living facilities (ALF) in 2007 and 2011, in Helsinki, Finland. We combined four cross-sectional datasets of (1) residents from all NHs in 2003 (N=1987), (2) residents from all ALFs in 2007 (N=1377), (3) residents from all NHs in 2011 (N=1576) and (4) residents from all ALFs in 2011 (N=1585). All participants at each time point were assessed using identical methods, including the Mini Nutritional Assessment (MNA). The mean age of both samples from 2011 was higher and a larger proportion suffered from dementia, compared to earlier collected samples. A larger proportion of the residents in 2011 were assessed either malnourished or at-risk for malnutrition, according to the MNA, than in 2003 (NH: 93.5% vs. 88.9%, p<0.001) and in 2007 (ALF: 82.1% vs. 78.1%, p=0.007). The use of nutritional, vitamin D and calcium supplements, and snacks between meals was significantly more common in the 2011 residents, compared to the respective earlier samples. In 2011, institutionalized residents were more disabled and more prone to malnourishment than in 2003 or 2007. Institutions do seem to be more aware of good nutritional care for vulnerable older people, although there is still room for improvement. Copyright © 2017 Elsevier B.V. All rights reserved.

Initial characterization of novel beaked whale morbillivirus in Hawaiian cetaceans.

PubMed

Jacob, Jessica M; West, Kristi L; Levine, Gregg; Sanchez, Susan; Jensen, Brenda A

2016-01-13

Cetacean morbillivirus (CeMV) is a causative factor in epizootics that have resulted in thousands of deaths throughout the Atlantic and Mediterranean since 1987, but less is known of its presence and significance in the Pacific. The first case of CeMV reported in Hawai'i was in a Longman's beaked whale that stranded in 2010. The initial CeMV sequence from this individual indicated the possibility of a novel strain. To address this, archived samples from cetaceans that stranded in Hawai'i between 1997 and 2014 were screened for CeMV. The beaked whale morbillivirus (BWMV) was detected in 15 individuals representing 12 different species (24% of Code 1 and 2 stranded cetaceans). The earliest detected case was a humpback whale that stranded in 1998. Sequence comparisons of a 2.2 kb sequence spanning the phosphoprotein (P) and nucleocapsid (N) genes strongly suggest that the BWMV represents a novel strain of CeMV present in Hawai'i and the Central Pacific. In contrast to recently reported isolates from Brazil and Australia that may represent a distinct clade, BWMV appears to be more closely related to known strains of CeMV (dolphin morbillivirus; porpoise morbillivirus; and pilot whale morbillivirus). Detection rates with repeat sampling of positive lymph nodes were between 2 and 61%, illustrating the extreme heterogeneity that can occur in affected tissues. Taken together, these results suggest that BWMV may be common and established in Hawaiian cetacean populations. BWMV will be important for understanding CeMV and health threats in the relatively understudied cetaceans of the Pacific.

Descriptive analysis and comparison of two French occupational exposure databases: COLCHIC and SCOLA.

PubMed

Mater, Gautier; Paris, Christophe; Lavoué, Jérôme

2016-05-01

Several countries have built databases of occupational hygiene measurements. In France, COLCHIC and SCOLA co-exist, started in 1987 and 2007, respectively. A descriptive comparison of the content of the two databases was carried out during the period 1987-2012, including variables, workplaces and agents, as well as exposure levels. COLCHIC and SCOLA contain, respectively, 841,682 (670 chemicals) and 152,486 records (70). They cover similar industries and occupations, and contain the same ancillary information. Across 17 common agents with >500 samples, the ratio of the median concentration in COLCHIC to the median concentration in SCOLA was 3.45 [1.03-14.3] during 2007-2012. This pattern remained when stratified by industry, task, and occupation, but was attenuated when restricted to similar sampling duration. COLCHIC and SCOLA represent a considerable source of information, but result from different purposes (prevention, regulatory). Potential differences due to strategies should evaluated when interpreting data from these databases. © 2016 Wiley Periodicals, Inc.

Evaluation of the genetic diversity of Plum pox virus in a single plum tree.

PubMed

Predajňa, Lukáš; Šubr, Zdeno; Candresse, Thierry; Glasa, Miroslav

2012-07-01

Genetic diversity of Plum pox virus (PPV) and its distribution within a single perennial woody host (plum, Prunus domestica) has been evaluated. A plum tree was triply infected by chip-budding with PPV-M, PPV-D and PPV-Rec isolates in 2003 and left to develop untreated under open field conditions. In September 2010 leaf and fruit samples were collected from different parts of the tree canopy. A 745-bp NIb-CP fragment of PPV genome, containing the hypervariable region encoding the CP N-terminal end was amplified by RT-PCR from each sample and directly sequenced to determine the dominant sequence. In parallel, the PCR products were cloned and a total of 105 individual clones were sequenced. Sequence analysis revealed that after 7 years of infection, only PPV-M was still detectable in the tree and that the two other isolates (PPV-Rec and PPV-D) had been displaced. Despite the fact that the analysis targeted a relatively short portion of the genome, a substantial amount of intra-isolate variability was observed for PPV-M. A total of 51 different haplotypes could be identified from the 105 individual sequences, two of which were largely dominant. However, no clear-cut structuration of the viral population by the tree architecture could be highlighted although the results obtained suggest the possibility of intra-leaf/fruit differentiation of the viral population. Comparison of the consensus sequence with the original source isolate showed no difference, suggesting within-plant stability of this original isolate under open field conditions. Copyright © 2012 Elsevier B.V. All rights reserved.

Comparisons of Reported Sexual and Condom Use Behaviors From a Retrospective Survey Versus a Prospective Diary in the Botswana Defence Force

DTIC Science & Technology

2013-01-01

Schroder et al., 2003). For example, Schroder et al. (2003) suggested that high-frequency events were less sa- lient, which may cause people to forget...collection methods that may increase reporting accuracy. REFERENCES Allen, S., Meinzen-Derr, J., Kautzman, M., Zulu , I., Trask, S., Fideli, U., et al. (2003

Complex dynamics in the distribution of players’ scoring performance in Rugby Union world cups

NASA Astrophysics Data System (ADS)

Seuront, Laurent

2013-09-01

The evolution of the scoring performance of Rugby Union players is investigated over the seven rugby world cups (RWC) that took place from 1987 to 2011, and a specific attention is given to how they may have been impacted by the switch from amateurism to professionalism that occurred in 1995. The distribution of the points scored by individual players, Ps, ranked in order of performance were well described by the simplified canonical law Ps∝(, where r is the rank, and ϕ and α are the parameters of the distribution. The parameter α did not significantly change from 1987 to 2007 (α=0.92±0.03), indicating a negligible effect of professionalism on players’ scoring performance. In contrast, the parameter ϕ significantly increased from ϕ=1.32 for 1987 RWC, ϕ=2.30 for 1999 to 2003 RWC and ϕ=5.60 for 2007 RWC, suggesting a progressive decrease in the relative performance of the best players. Finally, the sharp decreases observed in both α(α=0.38) and ϕ(ϕ=0.70) in the 2011 RWC indicate a more even distribution of the performance of individuals among scorers, compared to the more heterogeneous distributions observed from 1987 to 2007, and suggest a sharp increase in the level of competition leading to an increase in the average quality of players and a decrease in the relative skills of the top players. Note that neither α nor ϕ significantly correlate with traditional performance indicators such as the number of points scored by the best players, the number of games played by the best players, the number of points scored by the team of the best players or the total number of points scored over each RWC. This indicates that the dynamics of the scoring performance of Rugby Union players is influenced by hidden processes hitherto inaccessible through standard performance metrics; this suggests that players’ scoring performance is connected to ubiquitous phenomena such as anomalous diffusion.

Observations of Sk-69 deg 203 and the interstellar extinction towards SN 1987A

NASA Technical Reports Server (NTRS)

Fitzpatrick, Edward L.; Walborn, Nolan R.

1990-01-01

Optical and UV spectroscopic observations of the Large Magellanic Cloud (LMC) star Sk-69 deg 203 are discussed. The optical data reveal Sk-69 deg 203 to be a BO.7 Ia supergiant with a moderate nitrogen enhancement, and its UV spectrum is consistent with this classification. UV interstellar extinction curves were constructed for the star using, as flux standards, two lightly reddened LMS supergiants, which bracket Sk-69 deg 203's spectral type. The resultant extinction curves are consistent with the extinction law derived previously for the 30 Doradus region, and the results for Sk-69 deg 203 suggest that the general 30 Doradus extinction law is appropriate for dereddening the observed fluxes of SN 1987A. Published H I 21 observations place SN 1987A in a region with a strong E-W gradient in the total hydrogen content. Comparison with the H I column density implied by the reddening indicates that the supernova is imbedded approximately in the middle of the main H I complex.

Outer crust of nonaccreting cold neutron stars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ruester, Stefan B.; Hempel, Matthias; Schaffner-Bielich, Juergen

The properties of the outer crust of nonaccreting cold neutron stars are studied by using modern nuclear data and theoretical mass tables, updating in particular the classic work of Baym, Pethick, and Sutherland. Experimental data from the atomic mass table from Audi, Wapstra, and Thibault of 2003 are used and a thorough comparison of many modern theoretical nuclear models, both relativistic and nonrelativistic, is performed for the first time. In addition, the influences of pairing and deformation are investigated. State-of-the-art theoretical nuclear mass tables are compared to check their differences concerning the neutron drip line, magic neutron numbers, the equationmore » of state, and the sequence of neutron-rich nuclei up to the drip line in the outer crust of nonaccreting cold neutron stars.« less

Payload Flight Assignments: NASA Mixed Fleet

NASA Technical Reports Server (NTRS)

Parker, Robert A. R.

1997-01-01

This manifest summarizes the missions planned by NASA for the Space Shuttle and Expendable Launch Vehicles (ELV's) as of the date of publication. Space Shuttle and ELV missions are shown through calendar year 2003. Space Shuttle missions for calendar years 2002-2003 are under review pending the resolution of details in the assembly sequence of the International Space Station (ISS).

Tibial Fixation of Anterior Cruciate Ligament Allograft Tendons. Comparison of 1-, 2-, and 4-Stranded Constructs

DTIC Science & Technology

2009-01-01

cruciate ligament reconstruction. Arthroscopy . 1998;14:278-284. 2. Anderson AF, Synder RB, Federspiel CF, Lipscomb AB. Instrumented evaluation of... Arthroscopy . 2003;19(10):14-29. 4. Brand JC Jr, Pienkowski D, Steenlage E, Hamilton D, Johnson DL, Caborn DN. Interference screw fixation strength of a...screws. Arthroscopy . 2003;19:991-996. 8. Chang HC, Nyland J, Nawab A, Burden R, Caborn DN. Biomechanical comparison of the bioabsorbable RetroScrew

Key Competencies. Second Edition.

ERIC Educational Resources Information Center

Haworth, David; Browne, Geoff

Key competencies (or generic skills) have been specified in four sources: Further Education Unit (FEU), United Kingdom (1987); Finn Report (1991) and Mayer Committee (1992), Australia; U.S. Labor Secretary's Commission on Achieving Necessary Skills (SCANS) (June 1991); and Butterworth and Lovell (1983), New South Wales. A comparison of the four…

The NS3 proteins of global strains of bluetongue virus evolve into regional topotypes through negative (purifying) selection.

PubMed

Balasuriya, U B R; Nadler, S A; Wilson, W C; Pritchard, L I; Smythe, A B; Savini, G; Monaco, F; De Santis, P; Zhang, N; Tabachnick, W J; Maclachlan, N J

2008-01-01

Comparison of the deduced amino acid sequences of the genes (S10) encoding the NS3 protein of 137 strains of bluetongue virus (BTV) from Africa, the Americas, Asia, Australia and the Mediterranean Basin showed limited variation. Common to all NS3 sequences were potential glycosylation sites at amino acid residues 63 and 150 and a cysteine at residue 137, whereas a cysteine at residue 181 was not conserved. The PPXY and PS/TAP late-domain motifs were conserved in all but three of the viruses. Phylogenetic analyses of these same sequences yielded two principal clades that grouped the viruses irrespective of their serotype or year of isolation (1900-2003). All viruses from Asia and Australia were grouped in one clade, whereas those from the other regions were present in both clades. Each clade segregated into distinct subclades that included viruses from single or multiple regions, and the S10 genes of some field viruses were identical to those of live-attenuated BTV vaccines. There was no evidence of positive selection on the S10 gene as assessed by reconstruction of ancestral codon states on the phylogeny, rather the functional constraints of the NS3 protein are expressed through substantial negative (purifying) selection.

GMD Coupling to Power Systems and Disturbance Mitigation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rivera, Michael Kelly; Bent, Russell Whitford

Presentation includes slides on Geomagnetic Disturbance: Ground Fields; Geomagnetic Disturbance: Coupling to Bulk Electric System; Geomagnetic Disturbance: Transformers; GMD Assessment Workflow (TPL-007-1); FERC order 830; Goals; SuperMag (1 min data) Nov. 20-21, 2003 Storm (DST = -422); Spherical Harmonics; Spherical Harmonics Nov. 20-21, 2003 Storm (DST = -422); DST vs HN0,0; Fluctuations vs. DST; Fluctuations; Conclusions and Next Steps; GMD Assessment Workflow (TPL-007-1); EMP E3 Coupling to Texas 2000 Bus Model; E3 Coupling Comparison (total GIC) Varying Ground Zero; E3 Coupling Comparison (total MVAR) Varying Ground Zero; E3 Coupling Comparison (GIC) at Peak Ground Zero; E3 Coupling Comparison (GIC) atmore » Peak Ground Zero; and Conclusion.« less

Spectrophotometry of comets Giacobini-Zinner and Halley

NASA Technical Reports Server (NTRS)

Tegler, Stephen C.; O'Dell, C. R.

1987-01-01

Optical window spectrophotometry was performed on comets Giacobini-Zinner and Halley over the interval 300-1000 nm. Band and band-sequence fluxes were obtained for the brightest features of OH, CN, NH, and C2, special care having been given to determinations of extinction, instrumental sensitivities, and corrections for Fraunhofer lines. C2 Swan band-sequence flux ratios were determined with unprecedented accuracy and compared with the predictions of the detailed equilibrium models of Krishna Swamy et al. (1977, 1979, 1981, and 1987). It is found that these band sequences do not agree with the predictions, which calls into question the assumptions made in deriving the model, namely resonance fluorescence statistical equilibrium. Suggestions are made as to how to resolve this discrepancy.

A comparison of somatic mutational spectra in healthy study populations from Russia, Sweden and USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Noori, P; Hou, S; Jones, I M

Comparison of mutation spectra at the hypoxanthine-phosphoribosyl transferase (HPRT) gene of peripheral blood T lymphocytes may provide insight into the aetiology of somatic mutation contributing to carcinogenesis and other diseases. To increase knowledge of mutation spectra in healthy people, we have analyzed HPRT mutant T-cells of 50 healthy Russians originally recruited as controls for a study of Chernobyl clean-up workers (Jones et al. Radiation Res. 158, 2002, 424). Reverse transcriptase polymerase chain reactions and DNA sequencing identified 161 independent mutations among 176 thioguanine resistant mutants. Forty (40) mutations affected splicing mechanisms and 27 deletions or insertions of 1 to 60more » nucleotides were identified. Ninety four (94) single base substitutions were identified, including 62 different mutations at 55 different nucleotide positions, of which 19 had not previously been reported in human T-cells. Comparison of this base substitution spectrum with mutation spectra in a USA (Burkhart-Schultz et al. Carcinogenesis 17, 1996, 1871) and two Swedish populations (Podlutsky et al, Carcinogenesis 19, 1998, 557, Podlutsky et al. Mutation Res. 431, 1999, 325) revealed similarity in the type, frequency and distribution of mutations in the four spectra, consistent with aetiologies inherent in human metabolism. There were 15-19 identical mutations in the three pair-wise comparisons of Russian with USA and Swedish spectra. Intriguingly, there were 21 mutations unique to the Russian spectrum, and comparison by the Monte Carlo method of Adams and Skopek (J. Mol. Biol. 194, 1987, 391) indicated that the Russian spectrum was different from both Swedish spectra (P=0.007, 0.002) but not different from the USA spectrum (P=0.07), when Bonferroni correction for multiple comparisons was made (p < 0.008 required for significance). Age and smoking did not account for these differences. Other factors causing mutational differences need to be explored.« less

LFASE Report: Crustal Study

DTIC Science & Technology

1993-07-12

uniquely by estimating the smoothest model ( Kappus et. al., 1990). Initial modeling of the travel-time data, using this smoothest model as a starting...Res., 92, 8089-8115, 1987. 5. Kappus , M. E., A. J. Harding, and J. A. Orcutt, A comparison of tau-p transform methods, Geophysics, 55, 1202-1215, 1990

Sheltered and Supported Work Comparison: A Response to Wehman's Comments.

ERIC Educational Resources Information Center

Lam, Chow S.

1987-01-01

Responds to comments made by Wehman, Hill, Kregel, and Moon (1987) concerning the results of Lam's 1986 study comparing supported and sheltered employment programs for persons with mental retardation. Addresses specific questions raised by Wehman and his colleagues and discusses research issues on sample comparability. (Author/NB)

Connecting the Dots: The Decline in Meaningful Learning

ERIC Educational Resources Information Center

Stewart, Kenneth; Kilmartin, Christopher

2014-01-01

The authors describe cross-decades changes in the achievement attitudes and behaviors of average U. S. undergraduates that parallel the declines in meaningful learning reported by Arum and colleagues. Comparisons of pre-1987 and 2004-8 students on seven achievement-predictive measures revealed that (a) average 2004-8 undergraduates scored…

Comparisons of estimates of annual exceedance-probability discharges for small drainage basins in Iowa, based on data through water year 2013.

DOT National Transportation Integrated Search

2015-01-01

Traditionally, the Iowa Department of Transportation : has used the Iowa Runoff Chart and single-variable regional-regression equations (RREs) from a U.S. Geological Survey : report (published in 1987) as the primary methods to estimate : annual exce...

TIME SPENT IN ACTIVITIES, LOCATIONS, AND MICROENVIRONMENTS: A CALIFORNIA NATIONAL COMPARISON

EPA Science Inventory

In this report, we review data on the methodological background and results from the 1987-88 California Air Resources Board (CARB) time activity study and from a similar 1985 national study of Americans' Use of Time conducted at the University of Maryland, College Park. n order t...

Irish Educational Studies, Vol. 6, No. 2, 1986-1987.

ERIC Educational Resources Information Center

McKernan, Jim, Ed.; And Others

This document contains 14 papers, written by Irish scholars, that consider educational history, sociology, philosophy, comparisons, curricula, and measurements. Six of the papers address various aspects of the history of education in Ireland. Lorcan Walsh analyzes the theme of nationalism in the Christian Brothers' textbooks, and Aine Hyland…

Comparisons of estimates of annual exceedance-probability discharges for small drainage basins in Iowa, based on data through water year 2013 : [summary].

DOT National Transportation Integrated Search

2015-01-01

Traditionally, the Iowa DOT has used the Iowa Runoff Chart and single-variable regional regression equations (RREs) from a USGS report : (published in 1987) as the primary methods to estimate annual exceedance-probability discharge : (AEPD) for small...

Gross rearrangements within the 5'-untranslated region of the picornaviral genomes.

PubMed

Pilipenko, E V; Blinov, V M; Agol, V I

1990-06-11

An analysis of reported nucleotide sequences revealed several cases of gross rearrangements in the 5'-untranslated region (5-UTR) of picornaviral genomes. A large (greater than 100 nt) duplication was discovered in a downstream region of poliovirus 5-UTR involved in the translational control. Properties of the poliovirus mutants with large deletions [Kuge and Nomoto (1987) J. Virol. 61, 1478-1487] show that a single copy of the appropriate repeating unit is compatible with a wild type phenotype of the virus. In contrast to poliovirus and another enterovirus genomes, human rhinovirus RNAs contain only a single copy of this repeating unit. Another similarly large repeat was found in an upstream segment of the bovine enterovirus 5-UTR. A comparison of the primary and secondary structures of cardio- and aphthovirus 5-UTRs demonstrated the existence of a large (ca. 250 nucleotides) insertion/deletion in a region preceding the poly(C) tract. The two latter rearrangements appear to involve elements of the viral genome replication machinery. Possible origin as well as evolutionary and functional implications of these structural peculiarities are discussed.

Differences Among Lesbian, Gay, Bisexual, Heterosexual Individuals, and those Who Reported an Other Identity on an Open-Ended Response on Levels of Social Anxiety

PubMed Central

Wadsworth, Lauren Page; Hayes-Skelton, Sarah A.

2015-01-01

Previous research suggests that individuals with a marginalized sexual orientation report higher levels of emotional distress (Cochran, 2001; Mayer, 2003), including higher prevalence of social anxiety (Gilman et al., 2001; Potoczniak, Aldea, & DeBlaere, 2007; Safren & Pantalone, 2006) than heterosexuals. The present study builds on previous research by examining results across sexual minority identities, including an additional write-in response option. One hundred eighty individuals participated in an online study in which they indicated their sexual orientation and completed measures of social anxiety. Results indicated that in a sample recruited in a liberal urban population, lesbian/gay, and heterosexual individuals rated similar levels of social anxiety across four Liebowitz Social Anxiety Scale subscales (fear, avoidance, social, and performance; Liebowitz, 1987). Alternatively, individuals who identified as bisexual, or indicated a write-in sexual orientation rated significantly higher levels of social anxiety than the heterosexual, and lesbian/gay groups. Findings highlight the importance of offering a write-in sexual identity option, as well as looking at differences among group experiences across sexual minorities. Future studies should investigate potential group differences in social anxiety across sexual orientations in larger samples so that comparisons can be made among subgroups of the write-in response group, as well as investigate potential contributors to these group differences. PMID:26881266

An Evaluation of a Progressive High-Probability Instructional Sequence Combined with Low-Probability Demand Fading in the Treatment of Food Selectivity

ERIC Educational Resources Information Center

Penrod, Becky; Gardella, Laura; Fernand, Jonathan

2012-01-01

Few studies have examined the effects of the high-probability instructional sequence in the treatment of food selectivity, and results of these studies have been mixed (e.g., Dawson et al., 2003; Patel et al., 2007). The present study extended previous research on the high-probability instructional sequence by combining this procedure with…

Forty-eight-inch lidar aerosol measurements taken at the Langley Research Center, May 1974 to December 1987

NASA Technical Reports Server (NTRS)

Fuller, W. H., Jr.; Osborn, M. T.; Hunt, W. H.

1988-01-01

A ground based lidar system located at NASA Langley Research Center in Hampton, Va., was used to obtain high resolution vertical profiles of the stratospheric and upper tropospheric aerosol since 1974. More than 200 measurements obtained at a wavelength of 0.6943 microns during 1974 to 1987 are summarized. Plots of peak backscatter mixing ratio and integrated backscatter vs time are presented for the entire measurement sequence. The plots highlight the influence of several major volcanic eruptions on the long term stratospheric aerosol layer. In particular, the eruptions of El Chichon in late Mar. to early Apr. 1982, produced a massive aerosol layer. Aerosol enhancement from El Chichon reached Hampton, Va. by May 1982, with a scattering ratio of approx. 50 detected on Jul. 1, 1982. In addition, scattering ratio profiles for June 1982 to December 1987, along with tables containing numerical values of the backscatter ratio and backscattering function versus altitude, are included to further describe the upper tropospheric and stratospheric aerosol layer. A 14 year summary is presented, in a ready to use format, of lidar observations at a fixed midlatitude location to be used for further study.

Structural and semantic constraints on the resolution of pronouns and reflexives

PubMed Central

Kaiser, Elsi; Runner, Jeffrey T.; Sussman, Rachel S.; Tanenhaus, Michael K.

2009-01-01

We present four experiments on the interpretation of pronouns and reflexives in picture noun phrases with and without possessors (e.g. Andrew’s picture of him/himself, the picture of him/himself). The experiments (two off-line studies and two visual-world eye-tracking experiments) investigate how syntactic and semantic factors guide the interpretation of pronouns and reflexives and how different kinds of information are integrated during real-time reference resolution. The results show that the interpretation of pronouns and reflexives in picture NP constructions is sensitive not only to purely structural information, as is commonly assumed in syntactically-oriented theories of anaphor resolution, but also to semantic information (see Kuno, 1987; Tenny, 2003). Moreover, the results show that pronouns and reflexives differ in the degree of sensitivity they exhibit to different kinds of information. This finding indicates that the form-specific multiple-constraints approach (see Kaiser, 2003; Kaiser, 2005; Kaiser & Trueswell, 2008; Brown-Schmidt, Byron & Tanenhaus, 2005), which states that referential forms can exhibit asymmetrical sensitivities to the different constraints guiding reference resolution, also applies in the within-sentence domain. PMID:19426968

Natural Recovery and Planned Intervention in Coastal Wetlands: Venice Lagoon (Northern Adriatic Sea, Italy) as a Case Study

PubMed Central

Ceoldo, Sonia; Pellegrino, Nicola

2014-01-01

The goals of conservation and sustainable use of environmental ecosystems have increased the need for detailed knowledge of ecological evolution and responses to both anthropogenic pressures and recovery measures. The present study shows the effects of natural processes and planned intervention in terms of reducing nutrient inputs in a highly exploited coastal lagoon, describing its evolution over a 16-year period from the late 1980s (when eutrophication was at its peak) until 2003. Changes in nutrient and carbon concentrations in the top layer of sediments were investigated in parallel with macroalgal and seagrass biomass in the most anthropized basin of Venice Lagoon in four surveys conducted in accordance with the same protocols in 1987, 1993, 1998, and 2003. A pronounced reduction in trophic state (mainly total nitrogen, organic phosphorus, and organic carbon concentrations) and macroalgal biomass was recorded, together with the progressive expansion of seagrass meadows. General considerations are also made on the effects of Manila clam farming and the shift from illegal to managed clam farming. PMID:25126611

Natural recovery and planned intervention in coastal wetlands: Venice Lagoon (northern Adriatic Sea, Italy) as a case study.

PubMed

Facca, Chiara; Ceoldo, Sonia; Pellegrino, Nicola; Sfriso, Adriano

2014-01-01

The goals of conservation and sustainable use of environmental ecosystems have increased the need for detailed knowledge of ecological evolution and responses to both anthropogenic pressures and recovery measures. The present study shows the effects of natural processes and planned intervention in terms of reducing nutrient inputs in a highly exploited coastal lagoon, describing its evolution over a 16-year period from the late 1980s (when eutrophication was at its peak) until 2003. Changes in nutrient and carbon concentrations in the top layer of sediments were investigated in parallel with macroalgal and seagrass biomass in the most anthropized basin of Venice Lagoon in four surveys conducted in accordance with the same protocols in 1987, 1993, 1998, and 2003. A pronounced reduction in trophic state (mainly total nitrogen, organic phosphorus, and organic carbon concentrations) and macroalgal biomass was recorded, together with the progressive expansion of seagrass meadows. General considerations are also made on the effects of Manila clam farming and the shift from illegal to managed clam farming.

Complete Genome Sequence of Listeria monocytogenes DFPST0073, Isolated from Imported Mexican Soft Cheese.

PubMed

Salazar, Joelle K; Gonsalves, Lauren J; Schill, Kristin M; Sanchez Leon, Maria; Anderson, Nathan; Keller, Susanne E

2018-06-07

The genome of Listeria monocytogenes strain DFPST0073, isolated from imported fresh Mexican soft cheese in 2003, was sequenced using the Illumina MiSeq platform. Reads were assembled using SPAdes, and genome annotation was performed using the NCBI Prokaryotic Genome Annotation Pipeline.

Activities of Available and Investigational Antifungal Agents against Rhodotorula Species

PubMed Central

Diekema, D. J.; Petroelje, B.; Messer, S. A.; Hollis, R. J.; Pfaller, M. A

2005-01-01

Rhodotorula species are emerging pathogens in immunocompromised patients. We report the in vitro activities of eight antifungals against 64 Rhodotorula isolates collected in surveillance programs between 1987 and 2003. Rhodotorula strains are resistant in vitro to fluconazole (MIC at which 50% of the isolates tested are inhibited [MIC50], >128 μg/ml) and caspofungin (MIC50, >8 μg/ml). Amphotericin B (MIC50,1 μg/ml) and flucytosine (MIC50, 0.12 μg/ml) are both active in vitro, and the new and investigational triazoles all have some in vitro activity, with ravuconazole being the most active (MIC50, 0.25 μg/ml). PMID:15635020

Initial cloning and sequencing of hydHG, an operon homologous to ntrBC and regulating the labile hydrogenase activity in Escherichia coli K-12.

PubMed Central

Stoker, K; Reijnders, W N; Oltmann, L F; Stouthamer, A H

1989-01-01

To isolate genes from Escherichia coli which regulate the labile hydrogenase activity, a plasmid library was used to transform hydL mutants lacking the labile hydrogenase. A single type of gene, designated hydG, was isolated. This gene also partially restored the hydrogenase activity in hydF mutants (which are defective in all hydrogenase isoenzymes), although the low hydrogenase 1 and 2 levels were not induced. Therefore, hydG apparently regulates, specifically, the labile hydrogenase activity. Restoration of this latter activity in hydF mutants was accompanied by a proportional increase of the H2 uptake activity, suggesting a functional relationship. H2:fumarate oxidoreductase activity was not restored in complemented hydL mutants. These latter strains may therefore lack, in addition to the labile hydrogenase, a second component (provisionally designated component R), possibly an electron carrier coupling H2 oxidation to the anerobic respiratory chain. Sequence analysis showed an open reading frame of 1,314 base pairs for hydG. It was preceded by a ribosome-binding site but apparently lacked a promoter. Minicell experiments revealed a single polypeptide of approximately 50 kilodaltons. Comparison of the predicted amino acid sequence with a protein sequence data base revealed strong homology to NtrC from Klebsiella pneumoniae, a DNA-binding transcriptional activator. The 411 base pairs upstream from pHG40 contained a second open reading frame overlapping hydG by four bases. The deduced amino acid sequence showed considerable homology with the C-terminal part of NtrB. This sequence was therefore assumed to be part of a second gene, encoding the NtrB-like component, and was designated hydH. The labile hydrogenase activity in E. coli is apparently regulated by a multicomponent system analogous to the NtrB-NtrC system. This conclusion is in agreement with the results of Birkmann et al. (A. Birkmann, R. G. Sawers, and A. Böck, Mol. Gen. Genet. 210:535-542, 1987), who demonstrated ntrA dependence for the labile hydrogenase activity. Images PMID:2666400

Interpreting Breast International Group (BIG) 1-98: a randomized, double-blind, phase III trial comparing letrozole and tamoxifen as adjuvant endocrine therapy for postmenopausal women with hormone receptor-positive, early breast cancer.

PubMed

Regan, Meredith M; Price, Karen N; Giobbie-Hurder, Anita; Thürlimann, Beat; Gelber, Richard D

2011-05-26

The Breast International Group (BIG) 1-98 study is a four-arm trial comparing 5 years of monotherapy with tamoxifen or with letrozole or with sequences of 2 years of one followed by 3 years of the other for postmenopausal women with endocrine-responsive early invasive breast cancer. From 1998 to 2003, BIG -98 enrolled 8,010 women. The enhanced design f the trial enabled two complementary analyses of efficacy and safety. Collection of tumor specimens further enabled treatment comparisons based on tumor biology. Reports of BIG 1-98 should be interpreted in relation to each individual patient as she weighs the costs and benefits of available treatments. Clinicaltrials.gov ID: NCT00004205.

Interpreting breast international group (BIG) 1-98: a randomized, double-blind, phase III trial comparing letrozole and tamoxifen as adjuvant endocrine therapy for postmenopausal women with hormone receptor-positive, early breast cancer

PubMed Central

2011-01-01

The Breast International Group (BIG) 1-98 study is a four-arm trial comparing 5 years of monotherapy with tamoxifen or with letrozole or with sequences of 2 years of one followed by 3 years of the other for postmenopausal women with endocrine-responsive early invasive breast cancer. From 1998 to 2003, BIG -98 enrolled 8,010 women. The enhanced design f the trial enabled two complementary analyses of efficacy and safety. Collection of tumor specimens further enabled treatment comparisons based on tumor biology. Reports of BIG 1-98 should be interpreted in relation to each individual patient as she weighs the costs and benefits of available treatments. Clinicaltrials.gov ID: NCT00004205. PMID:21635709

Genetic analysis and ethnic affinities from two Scytho-Siberian skeletons.

PubMed

Ricaut, François-Xavier; Keyser-Tracqui, Christine; Cammaert, Laurence; Crubézy, Eric; Ludes, Bertrand

2004-04-01

We extracted DNA from two skeletons belonging to the Sytho-Siberian population, which were excavated from the Sebÿstei site (dating back 2,500 years) in the Altai Republic (Central Asia). Ancient DNA was analyzed by autosomal short tandem repeats (STRs) and by the sequencing of the hypervariable region 1 (HV1) of the mitochondrial DNA (mtDNA) control region. The results showed that these two skeletons were not close relatives. Moreover, their haplogroups were characteristic of Asian populations. Comparison with the haplogroup of 3,523 Asian and American individuals linked one skeleton with a putative ancestral paleo-Asiatic population and the other with Chinese populations. It appears that the genetic study of ancient populations of Central Asia brings important elements to the understanding of human population movements in Asia. Copyright 2003 Wiley-Liss, Inc.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Klenk, Hans-Peter; Held, Brittany; Lucas, Susan

Saccharomonospora azurea Runmao et al. 1987 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonosoras are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist and over-heated grain, where they might play a role in the primary degradation of plant material by attacking hemicellulose. They are Gram-negative staining organisms classified among the usually Gram-positive actinomycetes. Next to S. viridis, S. azurea is only the second member in the genus Saccharomonospora for with a completely sequenced type strain genome willmore » be published. Here we describe the features of this organism, together with the complete genome sequence with project status 'permanent draft', and annotation. The 4,763,832 bp long chromosome with its 4,472 protein-coding and 58 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).« less

Scope Notes for LISA Subject Headings.

ERIC Educational Resources Information Center

Browne, Glenda

1992-01-01

Reports on a study that examined scope notes added to subject headings in the Library and Information Science Abstracts (LISA) Online User Manual. Types of messages conveyed by scope notes and word patterns within the notes are identified, and comparisons between the 1982 and 1987 editions of the manual are made. (16 references) (MES)

Comparison of In-Vitro and In-Vivo Toxic Effects of Microcystin-LR in Fasted Rats

DTIC Science & Technology

1989-02-15

form: FASEB J. 2, A584 (1988); Conference on Natural Toxins from Aquatic arid Marine Environments, Woods Hole, MA, August 1987, in press. The views of...intramitochondrial granules. J. Cell ijiol. 20, 95-109. REYNOLDS, E. S. (1965) Liver parenchymal cell injury. Ill. The nature of calcium-associated

Gender and Grade-Level Comparisons in the Structure of Problem Behaviors among Adolescents

ERIC Educational Resources Information Center

Chun, Heejung; Mobley, Michael

2010-01-01

Based on Jessor's theory (1987) the comparability of a second-order problem behavior model (SPBM) was investigated across gender and grade-level among adolescents. In addition, gender and grade-level differences in problem behavior engagement were addressed examining latent mean differences. Using a sample of 6504 adolescents drawn from the…

Cloning, sequencing, and expression of the gene encoding the high-molecular-weight cytochrome c from Desulfovibrio vulgaris Hildenborough.

PubMed Central

Pollock, W B; Loutfi, M; Bruschi, M; Rapp-Giles, B J; Wall, J D; Voordouw, G

1991-01-01

By using a synthetic deoxyoligonucleotide probe designed to recognize the structural gene for cytochrome cc3 from Desulfovibrio vulgaris Hildenborough, a 3.7-kb XhoI genomic DNA fragment containing the cc3 gene was isolated. The gene encodes a precursor polypeptide of 58.9 kDa, with an NH2-terminal signal sequence of 31 residues. The mature polypeptide (55.7 kDa) has 16 heme binding sites of the form C-X-X-C-H. Covalent binding of heme to these 16 sites gives a holoprotein of 65.5 kDa with properties similar to those of the high-molecular-weight cytochrome c (Hmc) isolated from the same strain by Higuchi et al. (Y. Higuchi, K. Inaka, N. Yasuoka, and T. Yagi, Biochim. Biophys. Acta 911:341-348, 1987). Since the data indicate that cytochrome cc3 and Hmc are the same protein, the gene has been named hmc. The Hmc polypeptide contains 31 histidinyl residues, 16 of which are integral to heme binding sites. Thus, only 15 of the 16 hemes can have bis-histidinyl coordination. A comparison of the arrangement of heme binding sites and coordinated histidines in the amino acid sequences of cytochrome c3 and Hmc from D. vulgaris Hildenborough suggests that the latter contains three cytochrome c3-like domains. Cloning of the D. vulgaris Hildenborough hmc gene into the broad-host-range vector pJRD215 and subsequent conjugational transfer of the recombinant plasmid into D. desulfuricans G200 led to expression of a periplasmic Hmc gene product with covalently bound hemes. Images PMID:1846136

Electronics Thermal Management Using Advanced Hybrid Two-Phase Loop Technology

DTIC Science & Technology

2007-07-08

high heat flux cooling systems [Kawaji and Chung, 2003; Estes and Mudawar , 1995]. The successful integration of mechanical pumps into the heat...1st International Conference on Microchannels and Minichannels, Rochester, New York, April 24~25, 2003. Estes, K. and Mudawar , I., “Comparison of

OGLE 2003-BLG-235/MOA 2003-BLG-53: A Planetary Microlensing Event

NASA Astrophysics Data System (ADS)

Bond, I. A.; Udalski, A.; Jaroszyński, M.; Rattenbury, N. J.; Paczyński, B.; Soszyński, I.; Wyrzykowski, L.; Szymański, M. K.; Kubiak, M.; Szewczyk, O.; Żebruń, K.; Pietrzyński, G.; Abe, F.; Bennett, D. P.; Eguchi, S.; Furuta, Y.; Hearnshaw, J. B.; Kamiya, K.; Kilmartin, P. M.; Kurata, Y.; Masuda, K.; Matsubara, Y.; Muraki, Y.; Noda, S.; Okajima, K.; Sako, T.; Sekiguchi, T.; Sullivan, D. J.; Sumi, T.; Tristram, P. J.; Yanagisawa, T.; Yock, P. C. M.; OGLE Collaboration

2004-05-01

We present observations of the unusual microlensing event OGLE 2003-BLG-235/MOA 2003-BLG-53. In this event, a short-duration (~7 days) low-amplitude deviation in the light curve due to a single-lens profile was observed in both the MOA (Microlensing Observations in Astrophysics) and OGLE (Optical Gravitational Lensing Experiment) survey observations. We find that the observed features of the light curve can only be reproduced using a binary microlensing model with an extreme (planetary) mass ratio of 0.0039+11-07 for the lensing system. If the lens system comprises a main-sequence primary, we infer that the secondary is a planet of about 1.5 Jupiter masses with an orbital radius of ~3 AU.

Investigation on changes in complex vegetation coverage using multi-temporal landsat data of Western Black Sea region--a case study.

PubMed

Coban, Huseyin Oguz; Koc, Ayhan; Eker, Mehmet

2010-01-01

Previous studies have been able to successfully detect changes in gently-sloping forested areas with low-diversity and homogeneous vegetation cover using medium-resolution satellite data such as landsat. The aim of the present study is to examine the capacity of multi-temporal landsat data to identify changes in forested areas with mixed vegetation and generally located on steep slopes or non-uniform topography landsat thematic mapper (TM) and landsat enhanced thematic mapperplus (ETM+) data for the years 1987-2000 was used to detect changes within a 19,500 ha forested area in the Western Black sea region of Turkey. The data comply with the forest cover type maps previously created for forest management plans of the research area. The methods used to detect changes were: post-classification comparison, image differencing, image rationing and NDVI (Normalized Difference Vegetation Index) differencing methods. Following the supervised classification process, error matrices were used to evaluate the accuracy of classified images obtained. The overall accuracy has been calculated as 87.59% for 1987 image and as 91.81% for 2000 image. General kappa statistics have been calculated as 0.8543 and 0.9038 for 1987 and 2000, respectively. The changes identified via the post-classification comparison method were compared with other change detetion methods. Maximum coherence was found to be 74.95% at 4/3 band rate. The NDVI difference and 3rd band difference methods achieved the same coherence with slight variations. The results suggest that landsat satellite data accurately conveys the temporal changes which occur on steeply-sloping forested areas with a mixed structure, providing a limited amount of detail but with a high level of accuracy. Moreover it has been decided that the post-classification comparison method can meet the needs of forestry activities better than other methods as it provides information about the direction of these changes.

Advanced Hybrid Cooling Loop Technology for High Performance Thermal Management

DTIC Science & Technology

2006-06-01

and Chung, 2003; Estes and Mudawar , 1995]. Because of the pumping pressure and flow rate requirements, such pumped systems require large pumping and...United States, April 24-25, 2003. 8. Estes, K. and Mudawar , I., “Comparison of Two-Phase Electronic Cooling Using Free Jets and Sprays”, Journal of

Advanced Hybrid Cooling Loop Technology for High Performance Thermal Management

DTIC Science & Technology

2006-06-01

aforementioned problem of the passive devices [Kawaji and Chung, 2003; Estes and Mudawar , 1995]. Because of the pumping pressure and flow rate requirements...Microchannels and Minichannels, Rochester, NY, United States, April 24-25, 2003. 8. Estes, K. and Mudawar , I., “Comparison of Two-Phase Electronic

System Accuracy Evaluation of Four Systems for Self-Monitoring of Blood Glucose Following ISO 15197 Using a Glucose Oxidase and a Hexokinase-Based Comparison Method.

PubMed

Link, Manuela; Schmid, Christina; Pleus, Stefan; Baumstark, Annette; Rittmeyer, Delia; Haug, Cornelia; Freckmann, Guido

2015-04-14

The standard ISO (International Organization for Standardization) 15197 is widely accepted for the accuracy evaluation of systems for self-monitoring of blood glucose (SMBG). Accuracy evaluation was performed for 4 SMBG systems (Accu-Chek Aviva, ContourXT, GlucoCheck XL, GlucoMen LX PLUS) with 3 test strip lots each. To investigate a possible impact of the comparison method on system accuracy data, 2 different established methods were used. The evaluation was performed in a standardized manner following test procedures described in ISO 15197:2003 (section 7.3). System accuracy was assessed by applying ISO 15197:2003 and in addition ISO 15197:2013 criteria (section 6.3.3). For each system, comparison measurements were performed with a glucose oxidase (YSI 2300 STAT Plus glucose analyzer) and a hexokinase (cobas c111) method. All 4 systems fulfilled the accuracy requirements of ISO 15197:2003 with the tested lots. More stringent accuracy criteria of ISO 15197:2013 were fulfilled by 3 systems (Accu-Chek Aviva, ContourXT, GlucoMen LX PLUS) when compared to the manufacturer's comparison method and by 2 systems (Accu-Chek Aviva, ContourXT) when compared to the alternative comparison method. All systems showed lot-to-lot variability to a certain degree; 2 systems (Accu-Chek Aviva, ContourXT), however, showed only minimal differences in relative bias between the 3 evaluated lots. In this study, all 4 systems complied with the evaluated test strip lots with accuracy criteria of ISO 15197:2003. Applying ISO 15197:2013 accuracy limits, differences in the accuracy of the tested systems were observed, also demonstrating that the applied comparison method/system and the lot-to-lot variability can have a decisive influence on accuracy data obtained for a SMBG system. © 2015 Diabetes Technology Society.

Vibration-Rotation Bands of HF and DF

DTIC Science & Technology

1977-09-23

98 IZa. Comparison of Observed and Calculated Line Positions of HF, Av = I Sequence ........................... 99 f2b. Comparison of Observed and...Calculated Line Positions of HF, Av = 2 Sequence ........................... 102 12c. Comparison of Observed and Calculated Line Positions of HF, Av = 3...Sequence ........................... 107 i2d. Comparison of Observed and Calculated Line Positions ofHF, Av = 4 Sequence ........................... fi

Faint Photoelectric Photometric Standard Star Sequences

DTIC Science & Technology

1988-07-15

data awaiting additional study which will result in published research papers . The following list is a compilation of the publications which have...Astrophysical Journal, 323, 271, 1987. papers in preparation.... 1. "The Open Cluster van den Bergh Hagen-Harris No. 99", by A. U. Landolt, C. L...REPORT For a Grant for Basic Scientific Research (AFOSR Grant No. 82-0192) from The Air Force Office of Scientific Research entitled FAINT

Perception of Long-Period Complex Sounds

DTIC Science & Technology

1989-11-27

Richard M. Warren AFOSR Grant No. 88-0320 M CES Guttman, N. & Julesz, B. (1963). Lower limits of auditory periodicity analysis. Journal of the Aostical...order within auditory sequences. Peretion & PsvchobhVsics, 12, 86-90. Watson, C.S., (1987). Uncertainty, informational masking, and the capacity of...immediate memory. In W.A. Yost and C.S. Watson (eds.), Auditory Processing of Camlex Sounds. New Jersey: lawrence Erlbaum Associates, pp. 267-277

Human Factors Issues In Aircraft Maintenance And Inspection

DTIC Science & Technology

1990-11-01

Im z Cl) 4 w4 z z w . U .) ** DISPLAY0 00 LUU 40z:- z0 LL62 The Information Environment in Inspection Colin G. Drury , Ph.D. University at Buffalo...54 V. The Information Environment in Inspection Colin G. D ruy...tasks are sequenced within the Job ( Drury &t al., 1987; Shepherd, 1976). From such a Task Description we can determine how the demands of the tasks

The Updated IAU MDC Catalogue of Photographic Meteor Orbits

NASA Technical Reports Server (NTRS)

Porubcan, V.; Svoren, J.; Neslusan, L.; Schunova, E.

2011-01-01

The database of photographic meteor orbits of the IAU Meteor Data Center at the Astronomical Institute SAS has gradually been updated. To the 2003 version of 4581 photographic orbits compiled from 17 different stations and obtained in the period 1936-1996, additional new 211 orbits compiled from 7 sources have been added. Thus, the updated version of the catalogue contains 4792 photographic orbits (equinox J2000.0) available either in two separate orbital and geophysical data files or a file with the merged data. All the updated files with relevant documentation are available at the web of the IAU Meteor Data Center. Keywords astronomical databases photographic meteor orbits 1 Introduction Meteoroid orbits are a basic tool for investigation of distribution and spatial structure of the meteoroid population in the close surroundings of the Earth s orbit. However, information about them is usually widely scattered in literature and often in publications with limited circulation. Therefore, the IAU Comm. 22 during the 1976 IAU General Assembly proposed to establish a meteor data center for collection of meteor orbits recorded by photographic and radio techniques. The decision was confirmed by the next IAU GA in 1982 and the data center was established (Lindblad, 1987). The purpose of the data center was to acquire, format, check and disseminate information on precise meteoroid orbits obtained by multi-station techniques and the database gradually extended as documented in previous reports on the activity of the Meteor Data Center by Lindblad (1987, 1995, 1999 and 2001) or Lindblad and Steel (1993). Up to present, the database consists of 4581 photographic meteor orbits (Lindblad et al., 2005), 63.330 radar determined orbit: Harvard Meteor Project (1961-1965, 1968-1969), Adelaide (1960-1961, 1968-1969), Kharkov (1975), Obninsk (1967-1968), Mogadish (1969-1970) and 1425 video-recordings (Lindblad, 1999) to which additional 817 video meteors orbits published by Koten el al. (2003) were

Breastfeeding rates in Hong Kong: a comparison of the 1987 and 1997 birth cohorts.

PubMed

Leung, Gabriel M; Ho, Lai-Ming; Lam, Tai-Hing

2002-09-01

Low breastfeeding rates are an issue of international public health concern. Anecdotal reports suggest very low breastfeeding rates in Asia, but no population-based studies have been conducted in the region. To determine the secular trend in breastfeeding practice in an Asian postindustrialized metropolitan community, we examined data from two population-based birth cohorts of Hong Kong infants in 1987 and 1997. Annual population rates of breastfeeding initiation and duration were estimated from the birth cohorts, considering the change in breastfeeding rates over 10 years with correction for sociodemographic and birth characteristics. Factors associated with breastfeeding practice were identified using multivariate logistic regression modeling in a pooled analysis of individual data of both cohorts. Overall, 26.8 percent of mothers initiated breastfeeding in 1987, and the rate increased to 33.5 percent in 1997. The rate would have been 27.4 percent in 1987 if the distributions of method of delivery, birthweight, birth order, maternal age, education, and employment status had been the same as in 1997. Only 7.6 percent of infants remained on the breast for more than 1 month in 1987 compared with 20.4 percent a decade later. Similarly, the rate for breastfeeding more than 3 months increased from 3.9 to 10.3 percent. Total breastfeeding duration was significantly longer in 1997 than 10 years earlier. This is the first systematic report of secular variations of breastfeeding rates in Asia. Hong Kong should set higher but realistic goals for breastfeeding that emphasize both initiation and maintenance. Given the wide latitude for improvement in terms of readily modifiable risk factors, such as smoking and cesarean section, these new goals should focus on improving rates in these targeted groups where breastfeeding rates are lowest.

SN REFSDAL: CLASSIFICATION AS A LUMINOUS AND BLUE SN 1987A-LIKE TYPE II SUPERNOVA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kelly, P. L.; Filippenko, A. V.; Graham, M. L.

We have acquired Hubble Space Telescope (HST) and Very Large Telescope near-infrared spectra and images of supernova (SN) Refsdal after its discovery as an Einstein cross in fall 2014. The HST light curve of SN Refsdal has a shape consistent with the distinctive, slowly rising light curves of SN 1987A-like SNe, and we find strong evidence for a broad H α P-Cygni profile and Na I D absorption in the HST grism spectrum at the redshift ( z = 1.49) of the spiral host galaxy. SNe IIn, largely powered by circumstellar interaction, could provide a good match to the lightmore » curve of SN Refsdal, but the spectrum of a SN IIn would not show broad and strong H α and Na I D absorption. From the grism spectrum, we measure an H α expansion velocity consistent with those of SN 1987A-like SNe at a similar phase. The luminosity, evolution, and Gaussian profile of the H α emission of the WFC3 and X-shooter spectra, separated by ∼2.5 months in the rest frame, provide additional evidence that supports the SN 1987A-like classification. In comparison with other examples of SN 1987A-like SNe, photometry of SN Refsdal favors bluer B - V and V - R colors and one of the largest luminosities for the assumed range of potential magnifications. The evolution of the light curve at late times will provide additional evidence about the potential existence of any substantial circumstellar material. Using MOSFIRE and X-shooter spectra, we estimate a subsolar host-galaxy metallicity (8.3 ± 0.1 dex and <8.4 dex, respectively) near the explosion site.« less

Changes in sleep duration in Spanish children aged 2-14 years from 1987 to 2011.

PubMed

de Ruiter, Ingrid; Olmedo-Requena, Rocío; Sánchez-Cruz, José-Juan; Jiménez-Moleón, José-Juan

2016-05-01

Historical decreases in sleep duration in children have been documented worldwide; however, there is sparse information on sleep duration in differing cultural regions. We assess sleep duration and its trends for children in Spain from 1987 to 2011 and associated sociodemographic characteristics. Data from eight Spanish National Health Surveys, from 1987 to 2011, were collected on parent-reported sleep duration and associated socio-demographic characteristics including age, sex, parental level of education, child body mass index (BMI), and physical activity. A total of 24,867 children aged 2-14 years were included in the final sample. Overall, short sleep duration increased to 44.7% from 29.8% in 1987. Decreasing sleep duration trends were found in all demographic groups, decreasing by around 20 minutes in 24 hours from 1987 to 2011; decreasing to 10 hours 16 minutes in 2- to 5-year olds, 9 hours 31 minutes in 6- to 9-year-olds, and 8 hours 52 minutes in 10- to 14-year-olds. No difference in sleep duration was found between girls and boys. Sleep duration was associated with year of survey, age, level of parental education, obesity, and exercise. Almost 45% of children in Spain are not sleeping the recommended amount. Regional differences in sleep attitudes and duration alongside a lack of consistency in cut-offs for age-appropriate ideal sleep in literature is a barrier for international comparison and highlights the need for research in physiological sleep requirements. With the association of short sleep duration with many different health outcomes, sleep should be considered as a modifiable lifestyle factor and a public health issue. Copyright © 2016 Elsevier B.V. All rights reserved.

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

PubMed Central

O'Connell Motherway, Mary; Zomer, Aldert; Leahy, Sinead C.; Reunanen, Justus; Bottacini, Francesca; Claesson, Marcus J.; O'Brien, Frances; Flynn, Kiera; Casey, Patrick G.; Moreno Munoz, Jose Antonio; Kearney, Breda; Houston, Aileen M.; O'Mahony, Caitlin; Higgins, Des G.; Shanahan, Fergus; Palva, Airi; de Vos, Willem M.; Fitzgerald, Gerald F.; Ventura, Marco; O'Toole, Paul W.; van Sinderen, Douwe

2011-01-01

Development of the human gut microbiota commences at birth, with bifidobacteria being among the first colonizers of the sterile newborn gastrointestinal tract. To date, the genetic basis of Bifidobacterium colonization and persistence remains poorly understood. Transcriptome analysis of the Bifidobacterium breve UCC2003 2.42-Mb genome in a murine colonization model revealed differential expression of a type IVb tight adherence (Tad) pilus-encoding gene cluster designated “tad2003.” Mutational analysis demonstrated that the tad2003 gene cluster is essential for efficient in vivo murine gut colonization, and immunogold transmission electron microscopy confirmed the presence of Tad pili at the poles of B. breve UCC2003 cells. Conservation of the Tad pilus-encoding locus among other B. breve strains and among sequenced Bifidobacterium genomes supports the notion of a ubiquitous pili-mediated host colonization and persistence mechanism for bifidobacteria. PMID:21690406

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor.

PubMed

O'Connell Motherway, Mary; Zomer, Aldert; Leahy, Sinead C; Reunanen, Justus; Bottacini, Francesca; Claesson, Marcus J; O'Brien, Frances; Flynn, Kiera; Casey, Patrick G; Munoz, Jose Antonio Moreno; Kearney, Breda; Houston, Aileen M; O'Mahony, Caitlin; Higgins, Des G; Shanahan, Fergus; Palva, Airi; de Vos, Willem M; Fitzgerald, Gerald F; Ventura, Marco; O'Toole, Paul W; van Sinderen, Douwe

2011-07-05

Development of the human gut microbiota commences at birth, with bifidobacteria being among the first colonizers of the sterile newborn gastrointestinal tract. To date, the genetic basis of Bifidobacterium colonization and persistence remains poorly understood. Transcriptome analysis of the Bifidobacterium breve UCC2003 2.42-Mb genome in a murine colonization model revealed differential expression of a type IVb tight adherence (Tad) pilus-encoding gene cluster designated "tad(2003)." Mutational analysis demonstrated that the tad(2003) gene cluster is essential for efficient in vivo murine gut colonization, and immunogold transmission electron microscopy confirmed the presence of Tad pili at the poles of B. breve UCC2003 cells. Conservation of the Tad pilus-encoding locus among other B. breve strains and among sequenced Bifidobacterium genomes supports the notion of a ubiquitous pili-mediated host colonization and persistence mechanism for bifidobacteria.

Declines in TBT contamination in Irish coastal waters 1987-2011, using the dogwhelk (Nucella lapillus) as a biological indicator.

PubMed

Wilson, J G; Minchin, D; McHugh, B; McGovern, E; Tanner, C J; Giltrap, M

2015-11-15

Using the vas deferens sequence index (VDSI) and relative penis size index (RPSI) in dogwhelks (Nucella lapillus), imposex levels were assessed at 63 sites within 11 sea inlets during 2010/2011 and compared these with levels gathered since 1987. Sterile females (VDS>5.0) were found at 14 of the 63 sites and 47 sites (75%) met the EcoQO (VDSI<2.0). The absence of imposex in 'control' areas on the west coast is due to the lack of vessel paint applications or net dips with TBT being used as an active anti-fouling ingredient. A significant decline was observed following 2005 when comparing VDSI levels which is consistent with the decline of TBT usage. Current levels are consistent with an overall improvement towards achieving Good Environmental Status according to the requirements under the Marine Strategy Framework Directive. Copyright © 2015 Elsevier Ltd. All rights reserved.

Trends of polybrominated diphenyl ethers and hexabromocyclododecane in eggs of Canadian Arctic seabirds reflect changing use patterns.

PubMed

Braune, Birgit M; Letcher, Robert J; Gaston, Anthony J; Mallory, Mark L

2015-10-01

Due to the substantial use and release of polybrominated diphenyl ether (PBDE) flame retardants in North America, PBDE concentrations in North American marine biota are among the highest in the world. In this study, we compared PBDE concentrations and congener patterns in eggs of five seabird species (thick-billed murres, northern fulmars, black guillemots, glaucous gulls, black-legged kittiwakes) breeding at a colony in the Canadian Arctic in 1993, 2008 and 2013. Temporal trends of PBDEs (1975-2014) and another flame retardant, hexabromocyclododecane (HBCD) (2003-2014), were also examined in eggs of two seabird species, the thick-billed murre and northern fulmar. BDE-47 generally dominated the BDE congener profiles in eggs of all five species. Glaucous gulls had the highest concentrations of both ΣPBDE and BDE-47, and northern fulmars, the lowest. ΣPBDE concentrations increased exponentially in eggs of both thick-billed murres and northern fulmars from 1975 to 2003 with doubling times of 9.1 years in the murres and 7.2 years in the fulmars. From 2003 to 2008/09, ΣPBDE decreased rapidly in the murres and fulmars to concentrations not significantly different from those recorded in 1975 and 1987 for each species. After 2008/09, ΣPBDE concentrations plateaued. BDE-47 followed a similar temporal trend to that of ΣPBDE concentrations. These concentration trends were consistent with the phase-out of the penta- and octa-BDE products from the North American market in the mid-2000s. There was an overall decline in concentrations of HBCD in murre eggs from 2003 to 2014, whereas concentrations in the fulmar eggs increased from 2003 to 2006 followed by a decline to 2014. The ratio of HBCD to BDE-47 suggests that northern fulmars showed more of a European contaminant signature, and thick-billed murres, more of a North American signature. Crown Copyright © 2015. Published by Elsevier Inc. All rights reserved.

Genome and Transcriptome Sequencing of the Ostreid herpesvirus 1 From Tomales Bay, California

NASA Astrophysics Data System (ADS)

Burge, C. A.; Langevin, S.; Closek, C. J.; Roberts, S. B.; Friedman, C. S.

2016-02-01

Mass mortalities of larval and seed bivalve molluscs attributed to the Ostreid herpesvirus 1 (OsHV-1) occur globally. OsHV-1 was fully sequenced and characterized as a member of the Family Malacoherpesviridae. Multiple strains of OsHV-1 exist and may vary in virulence, i.e. OsHV-1 µvar. For most global variants of OsHV-1, sequence data is limited to PCR-based sequencing of segments, including two recent genomes. In the United States, OsHV-1 is limited to detection in adjacent embayments in California, Tomales and Drakes bays. Limited DNA sequence data of OsHV-1 infecting oysters in Tomales Bay indicates the virus detected in Tomales Bay is similar but not identical to any one global variant of OsHV-1. In order to better understand both strain variation and virulence of OsHV-1 infecting oysters in Tomales Bay, we used genomic and transcriptomic sequencing. Meta-genomic sequencing (Illumina MiSeq) was conducted from infected oysters (n=4 per year) collected in 2003, 2007, and 2014, where full OsHV-1 genome sequences and low overall microbial diversity were achieved from highly infected oysters. Increased microbial diversity was detected in three of four samples sequenced from 2003, where qPCR based genome copy numbers of OsHV-1 were lower. Expression analysis (SOLiD RNA sequencing) of OsHV-1 genes expressed in oyster larvae at 24 hours post exposure revealed a nearly complete transcriptome, with several highly expressed genes, which are similar to recent transcriptomic analyses of other OsHV-1 variants. Taken together, our results indicate that genome and transcriptome sequencing may be powerful tools in understanding both strain variation and virulence of non-culturable marine viruses.

[Molecular epidemiological analysis of HIV-1 variants circulating in Russia in 1987-2015].

PubMed

Lapovok, I A; Lopatukhin, A E; Kireev, D E; Kazennova, E V; Lebedev, A V; Bobkova, M R; Kolomeets, A N; Turbina, G I; Shipulin, G A; Ladnaya, N N; Pokrovsky, V V

To simultaneously analyze HIV-1 samples from all Russian regions to characterize the epidemiology of HIV infection in the country as a whole. The most extensive study was conducted to examine nucleotide sequences of the pol gene of HIV-1 samples isolated from HIV-positive persons in different regions of Russia, with the diagnosis date being fixed during 1987-2015. The nucleotide sequences of the HIV-1 genome were analyzed using computer programs and on-line applications to identify a virus subtype and new recombinant forms. The nucleotide sequences of the pol gene were analyzed in 1697 HIV-1 samples and the findings were that the genetic variant subtype A1 (IDU-A) was dominant throughout the entire territory of Russia (in more than 80% of all infection cases). Other virus variants circulating in Russia were analyzed; the phenomenon of the higher distribution of the recombinant form CRF63/02A in Siberia, which had been previously described in the literature, was also confirmed. Four new recombinant forms generated by the virus subtype A1 (IDU-A) and B and two AG recombinant forms were found. There was a larger genetic distance between the viruses of IDU-A variant circulating among the injecting drug users and those infected through heterosexual contact, as well as a change in the viruses of subtype G that caused the outbreak in the south of the country over time in 1988-1989. The findings demonstrate continuous HIV-1 genetic variability and recombination over time in Russia, as well as increased genetic diversity with higher HIV infection rates in the population.

Is Ammonification Rate in Marine Sediment Related to Plankton Composition and Abundance? A Time-series Study in Villefranche Bay (NW Mediterranean)

NASA Astrophysics Data System (ADS)

Fernex, François E.; Braconnot, Jean-Claude; Dallot, Serge; Boisson, Michel

1996-09-01

Observations were made near Cap Ferrat (Station B, about 80 m in water depth) France, in the water column and in the sediment, in order to evaluate to what extent variations in the ammonia and nitrate concentrations of the sediments are related to plankton population abundance and composition. Nitrate, nitrite, ammonia and chlorophyll awere measured several times during 1987 to 1989, at two depths (1 and 40 m). Copepods and salps in the upper 75 m of the water column were counted several times a week from 1987 to 1990. Ammonia and nitrate concentrations and ammonification rate were determined in the underlying sediments. During Spring 1987, phytoplankton biomass showed a maximum at the end of March; copepod populations increased regularly till the end of April, and salps increased from this time to the end of May. These populations were not so well developed during Spring 1988 and 1989. During the blooms, salp were mainly represented by Thalia democratica. The biomass of phytoplankton and zooplankton was low in summer. The sequence suggests that the copepod decline was related to reduced food levels after the phytoplankton decline. Salp population growth was not at the expense of phytoplankton and it can be assumed that the salp fed on other material. In 1987 and 1988, maximum organic nitrogen concentration in the bottom sediment and maximum ammonification rate directly followed the salp spring bloom. In 1987, the highest ammonification rate measured in the surficial sediment (0-2 cm) reached 0·05 μ M cm 3day -1(in June). In 1990, the rate exceeded 0·1 μM cm -3 day -1during an important salp bloom. Therefore, it seems that the sinking of salp fecal pellets plays an important part in the transfer of organic matter to the bottom, and microbial activity in the surficial sediment leads to mineralization of a great part of the organic nitrogen quickly after its deposition.

A Rationale for the Outcomes of Insurgencies: A Comparison Case Study Between Insurgencies in Peru and Nepal

DTIC Science & Technology

2014-12-01

December 1987 and February 1992.100 Sigmund Freud notes such violent attitudes, and documents that human instincts are of two types—those that...Routledge Contemporary South Asia Series, 2010), 144. 101 Sigmund Freud , “Why War,” in Conflict after the Cold War: Arguments on Causes of War and

The Knowledge Base and Memory Performance: A Comparison of Academically Successful and Unsuccessful Learners. Paper 5/1987.

ERIC Educational Resources Information Center

Schneider, Wolfgang; And Others

The expert-novice paradigm, which demonstrates the outstanding role of domain-specific knowledge in explaining differences in memory behavior and performance, was examined. Two studies are described which compared memory performance of groups equivalent with regard to domain-specific knowledge but differing in intellectual ability. The hypothesis…

Summary of Computer Usage and Inventory of Computer Utilization in Curriculum. FY 1987-88.

ERIC Educational Resources Information Center

Tennessee Univ., Chattanooga. Center of Excellence for Computer Applications.

This report presents the results of a computer usage survey/inventory, the ninth in a series conducted at the University of Tennessee at Chattanooga to obtain information on the changing status of computer usage in the curricula. Data analyses are reported in 11 tables, which include comparisons between annual inventories and demonstrate growth…

Assessing and Developing the Adaptive Functioning of Handicapped Children and Youth. Final Report [October 1984-September 1987].

ERIC Educational Resources Information Center

Bruininks, Robert H.

The project sought to clarify the nature and structure of adaptive functioning and to address methodological issues in its assessment, in order to improve placement, evaluation, and instructional decision-making related to adaptive functioning. Project components included: (1) exploration of the structure of adaptive behavior; (2) comparison of…

Comparison of different stomatal conductance algorithms for ozone flux modelling

Treesearch

P. Buker; L.D. Emberson; M. R. Ashmore; H. M. Cambridge; C. M. Jacobs; W. J. Massman; J. Muller; N. Nikolov; K. Novak; E. Oksanen; M. Schaub; D. de la Torre

2007-01-01

A multiplicative and a semi-mechanistic, BWB-type [Ball, J.T., Woodrow, I.E., Berry, J.A., 1987. A model predicting stomatal conductance and its contribution to the control of photosynthesis under different environmental conditions. In: Biggens, J. (Ed.), Progress in Photosynthesis Research, vol. IV. Martinus Nijhoff, Dordrecht, pp. 221-224.] algorithm for calculating...

Linking CALL and SLA: Using the IRIS Database to Locate Research Instruments

ERIC Educational Resources Information Center

Handley, Zöe; Marsden, Emma

2014-01-01

To establish an evidence base for future computer-assisted language learning (CALL) design, CALL research needs to move away from CALL versus non-CALL comparisons, and focus on investigating the differential impact of individual coding elements, that is, specific features of a technology which might have an impact on learning (Pederson, 1987).…

Fading Supernova Creates Spectacular Light Show

NASA Technical Reports Server (NTRS)

2003-01-01

This image of SN 1987A, taken November 28, 2003 by the Advanced Camera for Surveys aboard NASA's Hubble Space Telescope (HST), shows many bright spots along a ring of gas, like pearls on a necklace. These cosmic pearls are being produced as superior shock waves unleashed during an explosion slam into the ring at more than a million miles per hour. The collision is heating the gas ring, causing its irnermost regions to glow. Astronomers detected the first of these hot spots in 1996, but now they see dozens of them all around the ring. With temperatures surging from a few thousand degrees to a million degrees, the flares are increasing in number. In the next few years, the entire ring will be ablaze as it absorbs the full force of the crash and is expected to become bright enough to illuminate the star's surroundings. Astronomers will then be able to obtain information on how the star ejected material before the explosion. The elongated and expanding object in the center of the ring is debris form the supernova blast which is being heated by radioactive elements, principally titanium 44, that were created in the explosion. This explosion was first observed by astronomers seventeen years ago in 1987, although the explosion took place about 160,000 years ago.

History of Hubble Space Telescope (HST)

NASA Image and Video Library

2003-11-28

This image of SN 1987A, taken November 28, 2003 by the Advanced Camera for Surveys aboard NASA's Hubble Space Telescope (HST), shows many bright spots along a ring of gas, like pearls on a necklace. These cosmic pearls are being produced as superior shock waves unleashed during an explosion slam into the ring at more than a million miles per hour. The collision is heating the gas ring, causing its irnermost regions to glow. Astronomers detected the first of these hot spots in 1996, but now they see dozens of them all around the ring. With temperatures surging from a few thousand degrees to a million degrees, the flares are increasing in number. In the next few years, the entire ring will be ablaze as it absorbs the full force of the crash and is expected to become bright enough to illuminate the star's surroundings. Astronomers will then be able to obtain information on how the star ejected material before the explosion. The elongated and expanding object in the center of the ring is debris form the supernova blast which is being heated by radioactive elements, principally titanium 44, that were created in the explosion. This explosion was first observed by astronomers seventeen years ago in 1987, although the explosion took place about 160,000 years ago.

Stability of a family of uniform vortices related to vortex configurations before merging

NASA Astrophysics Data System (ADS)

Luzzatto-Fegiz, P.; Williamson, C. H. K.

2006-11-01

Motivated by the merger of two corotating vortices, Cerretelli & Williamson (JFM 2003) discovered a family of uniform vorticity patches representing the continuation of two corotating vortices into a single ``dumbbell'' shape. This branch of solutions passes through a bifurcation from the Kirchhoff ellipses (discovered by Kamm 1987 and Saffman 1988) and ends into a cat's eye shape. By using a more accurate method for equilibrium shape calculation, we find some differences in the equilibrium shapes to those discovered by Cerretelli & Williamson, particularly near the topological change (from a two-vortex to a single vortex shape). We implement the approach of Dritschel (1985), and show that all the simply connected shapes are unstable to a three-fold perturbation, while a regime of the two-vortex shapes nearing the topological change is unstable to a two-fold antisymmetric perturbation. The stability of two patches has been source of debate in the literature. Saffman & Szeto (1980) predicted exchange of stability at an extremum in energy and angular momentum; on the other hand, Dritschel (1985) found that conditions for instability from linear analysis did not match those coming from the energy criterion. In the present work, we find precise agreement between results from linear analysis and energy criterion, in accordance with the more recent work of Kamm (1987) and Dritschel (1995).

Assessing responses of humpback whales to North Pacific Acoustic Laboratory (NPAL) transmissions: results of 2001--2003 aerial surveys north of Kauai.

PubMed

Mobley, Joseph R

2005-03-01

Eight aerial surveys were flown north of the Hawaiian island of Kauai during 2001 when the North Pacific Acoustic Laboratory (NPAL) source was not transmitting, and during 2002 and 2003 when it was. All surveys were performed during the period of peak residency of humpback whales (Feb-Mar). During 2002 and 2003, surveys commenced immediately upon cessation of a 24-h cycle of transmissions. Numbers and distribution of whales observed within 40 km of the NPAL source during 2001 (source off) were compared with those observed during 2002 and 2003 (source on). A total of 75 sightings was noted during 2001, as compared with 81 and 55 during 2002 and 2003, respectively. Differences in sighting rates (sightings/km) across years were not statistically significant. Assessment of distributional changes relied upon comparisons of three measures: (a) location depths; (b) distance from the NPAL source; and (c) distance offshore. None of the distributional comparisons revealed statistically significant differences across years. Several possible interpretations are examined: (a) whales have habituated to the NPAL signal; (b) insufficient statistical power exists in the present design to detect any effects; and (c) the effects are short-lived and become undetectable shortly after the cessation of transmissions.

Comparison of two underwater acoustic communications techniques for multi-user access

NASA Astrophysics Data System (ADS)

Hursky, Paul; Siderius, T. Martin; Kauaiex Group

2004-05-01

Frequency hopped frequency shift keying (FHFSK) and code division multiple access (CDMA) are two different modulation techniques for multiple users to communicate with a single receiver simultaneously. In July 2003, these two techniques were tested alongside each other in a shallow water coastal environment off the coast of Kauai. A variety of instruments were used to measure the prevailing oceanography, enabling detailed modeling of the channel. The channel was acoustically probed using LFM waveforms and m-sequences as well. We will present the results of demodulating the FHFSK and CDMA waveforms and discuss modeling the channel for the purpose of predicting multi-user communications performance. a)Michael B. Porter, Paul Hursky, Martin Siderius (SAIC), Mohsen Badiey (UD), Jerald Caruthers (USM), William S. Hodgkiss, Kaustubha Raghukumar (SIO), Dan Rouseff, Warren Fox (APL-UW), Christian de Moustier, Brian Calder, Barbara J. Kraft (UNH), Keyko McDonald (SPAWARSSC), Peter Stein, James K. Lewis, and Subramaniam Rajan (SSI).

Genetic characterization of the Bifidobacterium breve UCC 2003 hrcA locus.

PubMed

Ventura, Marco; Canchaya, Carlos; Bernini, Valentina; Del Casale, Antonio; Dellaglio, Franco; Neviani, Erasmo; Fitzgerald, Gerald F; van Sinderen, Douwe

2005-12-01

The bacterial heat shock response is characterized by the elevated expression of a number of chaperone complexes and transcriptional regulators, including the DnaJ and the HrcA proteins. Genome analysis of Bifidobacterium breve UCC 2003 revealed a second copy of a dnaJ gene, named dnaJ2, which is flanked by the hrcA gene in a genetic constellation that appears to be unique to the actinobacteria. Phylogenetic analysis using 53 bacterial dnaJ sequences, including both dnaJ1 and dnaJ2 sequences, suggests that these genes have followed a different evolutionary development. Furthermore, the B. breve UCC 2003 dnaJ2 gene seems to be regulated in a manner that is different from that of the previously characterized dnaJ1 gene. The dnaJ2 gene, which was shown to be part of a 2.3-kb bicistronic operon with hrcA, was induced by osmotic shock but not significantly by heat stress. This induction pattern is unlike those of other characterized dnaJ genes and may be indicative of a unique stress adaptation strategy by this commensal microorganism.

Genetic Characterization of the Bifidobacterium breve UCC 2003 hrcA Locus

PubMed Central

Ventura, Marco; Canchaya, Carlos; Bernini, Valentina; Del Casale, Antonio; Dellaglio, Franco; Neviani, Erasmo; Fitzgerald, Gerald F.; van Sinderen, Douwe

2005-01-01

The bacterial heat shock response is characterized by the elevated expression of a number of chaperone complexes and transcriptional regulators, including the DnaJ and the HrcA proteins. Genome analysis of Bifidobacterium breve UCC 2003 revealed a second copy of a dnaJ gene, named dnaJ2, which is flanked by the hrcA gene in a genetic constellation that appears to be unique to the actinobacteria. Phylogenetic analysis using 53 bacterial dnaJ sequences, including both dnaJ1 and dnaJ2 sequences, suggests that these genes have followed a different evolutionary development. Furthermore, the B. breve UCC 2003 dnaJ2 gene seems to be regulated in a manner that is different from that of the previously characterized dnaJ1 gene. The dnaJ2 gene, which was shown to be part of a 2.3-kb bicistronic operon with hrcA, was induced by osmotic shock but not significantly by heat stress. This induction pattern is unlike those of other characterized dnaJ genes and may be indicative of a unique stress adaptation strategy by this commensal microorganism. PMID:16332909

Pickup Protons: Comparisons using the Three-Dimensional MHD HHMS-PI model and Ulysses SWICS Measurements

NASA Technical Reports Server (NTRS)

Intriligator, Devrie S.; Detman, Thomas; Gloecker, George; Gloeckler, Christine; Dryer, Murray; Sun, Wei; Intriligator, James; Deehr, Charles

2012-01-01

We report the first comparisons of pickup proton simulation results with in situ measurements of pickup protons obtained by the SWICS instrument on Ulysses. Simulations were run using the three dimensional (3D) time-dependent Hybrid Heliospheric Modeling System with Pickup Protons (HHMS-PI). HHMS-PI is an MHD solar wind model, expanded to include the basic physics of pickup protons from neutral hydrogen that drifts into the heliosphere from the local interstellar medium. We use the same model and input data developed by Detman et al. (2011) to now investigate the pickup protons. The simulated interval of 82 days in 2003 2004, includes both quiet solar wind (SW) and also the October November 2003 solar events (the Halloween 2003 solar storms). The HHMS-PI pickup proton simulations generally agree with the SWICS measurements and the HHMS-PI simulated solar wind generally agrees with SWOOPS (also on Ulysses) measurements. Many specific features in the observations are well represented by the model. We simulated twenty specific solar events associated with the Halloween 2003 storm. We give the specific values of the solar input parameters for the HHMS-PI simulations that provide the best combined agreement in the times of arrival of the solar-generated shocks at both ACE and Ulysses. We show graphical comparisons of simulated and observed parameters, and we give quantitative measures of the agreement of simulated with observed parameters. We suggest that some of the variations in the pickup proton density during the Halloween 2003 solar events may be attributed to depletion of the inflowing local interstellar medium (LISM) neutral hydrogen (H) caused by its increased conversion to pickup protons in the immediately preceding shock.

Land cover change assessment using object-oriented classification based on image segmentation in the Binah river watershed (Togo and Benin)

NASA Astrophysics Data System (ADS)

Badjana, M. H.; Helmschrot, J.; Wala, K.; Flugel, W. A.; Afouda, A.; Akpagana, K.

2014-12-01

Assessing and monitoring land cover changes over time, especially in Sub-Saharan Africa characterized by both a high population growth and the highest rate of land degradation in the world is of high relevance for sustainable land management, water security and food production. In this study, land cover changes between 1972 and 2013 were investigated in the Binah river watershed (North of Togo and Benin) using advanced remote sensing and GIS technologies to support sustainable land and water resources management efforts. To this end, multi-temporal satellite images - Landsat MSS (1972), TM (1987) and ETM+ (2013) were processed using object-oriented classification based on image segmentation and post-classification comparison methods. Five main land cover classes namely agricultural land, forest land, savannah, settlements and water bodies have been identified with overall accuracies of 75.11% (1972), 81.82% (1987), and 86.1% (2013) and respective Kappa statistics of 0.67, 0.76 and 0.83. These classification results helped to explicitly assess the spatio-temporal pattern of land cover within the basin. The results indicate that savannah as the main vegetation type in the basin has decreased from 63.3% of the basin area in 1972 to 60.4% in 1987 and 35.6% in 2013. Also the forest land which covered 20.7% in 1972 has decreased to 12.7% in 1987 and 11.7% in 2013. This severe decrease in vegetation mainly resulted from the extension of agricultural areas and settlements, which is, thus, considered as the main driving force. In fact, agricultural land increased of 61.4% from 1972 to 1987, 81.4% from 1987 to 2013 and almost twice from 1972 to 2013 while human settlements increased from 0.8% of the basin area in 1972 to 2.5% in 1987 and 7.7% in 2013. The transition maps illustrate the conversion of savannah to agricultural land at each time step relating to slash and burn agriculture, but also demonstrate the threat of environmental degradation of the savannah biome. However, at the same time, some proportions of agricultural land were converted to savannah relating to fallow agriculture. As a first assessment for the Binah river watershed, this study provides useful guidelines for vegetation restoration and conservation, efforts in managing land degradation and implementing integrated land and water resources management plans.

Joint Inversion of Vp, Vs, and Resistivity at SAFOD

NASA Astrophysics Data System (ADS)

Bennington, N. L.; Zhang, H.; Thurber, C. H.; Bedrosian, P. A.

2010-12-01

Seismic and resistivity models at SAFOD have been derived from separate inversions that show significant spatial similarity between the main model features. Previous work [Zhang et al., 2009] used cluster analysis to make lithologic inferences from trends in the seismic and resistivity models. We have taken this one step further by developing a joint inversion scheme that uses the cross-gradient penalty function to achieve structurally similar Vp, Vs, and resistivity images that adequately fit the seismic and magnetotelluric MT data without forcing model similarity where none exists. The new inversion code, tomoDDMT, merges the seismic inversion code tomoDD [Zhang and Thurber, 2003] and the MT inversion code Occam2DMT [Constable et al., 1987; deGroot-Hedlin and Constable, 1990]. We are exploring the utility of the cross-gradients penalty function in improving models of fault-zone structure at SAFOD on the San Andreas Fault in the Parkfield, California area. Two different sets of end-member starting models are being tested. One set is the separately inverted Vp, Vs, and resistivity models. The other set consists of simple, geologically based block models developed from borehole information at the SAFOD drill site and a simplified version of features seen in geophysical models at Parkfield. For both starting models, our preliminary results indicate that the inversion produces a converging solution with resistivity, seismic, and cross-gradient misfits decreasing over successive iterations. We also compare the jointly inverted Vp, Vs, and resistivity models to borehole information from SAFOD to provide a "ground truth" comparison.

Absence of the right common carotid artery: a rare case without separate origins of the internal and external carotid arteries.

PubMed

Quinones, Gretchen; Srinivasan, Ashok

Absence of the common carotid artery (CCA) is a rare anomaly. In the few cases described in the literature, it has been typically associated with separate origins of the internal carotid artery (ICA) and external carotid artery (ECA) Fife (1921), Boyd (1934), Rossiti and Raininko (2001), Cerase et al. (2009), Drazin et al. (2010), Yim et al. (2009), Monaco et al. (2009), Jerius et al. (1995), Dahn et al. (1999), Cakirer et al. (2002), Choi et al. (2015), Bryan et al. (1978), Horowitz et al. (2003), Roberts and Gerald (1978), Rajeshwari (2013), Purkayastha et al. (2006), Maybody et al. (2003), Wood et al. (2011) . To the best of our knowledge, absence of the CCA without separate origins of the ECA and ICA has only been described five times before, one of them in conjunction with a persistent proatlantal intersegmental artery (PIA) Cao et al. (2011) and four with agenesis of the ICA Kobayashi et al. (2013), Kunishio et al. (1987), Chen et al. (2008), Xie et al. (2010) . We present a case of a previously undescribed variation of this rare vascular anomaly. Copyright © 2017 Elsevier Inc. All rights reserved.

Deriving Chesapeake Bay Water Quality Standards

USGS Publications Warehouse

Tango, Peter J.; Batiuk, Richard A.

2013-01-01

Achieving and maintaining the water quality conditions necessary to protect the aquatic living resources of the Chesapeake Bay and its tidal tributaries has required a foundation of quantifiable water quality criteria. Quantitative criteria serve as a critical basis for assessing the attainment of designated uses and measuring progress toward meeting water quality goals of the Chesapeake Bay Program partnership. In 1987, the Chesapeake Bay Program partnership committed to defining the water quality conditions necessary to protect aquatic living resources. Under section 303(c) of the Clean Water Act, States and authorized tribes have the primary responsibility for adopting water quality standards into law or regulation. The Chesapeake Bay Program partnership worked with U.S. Environmental Protection Agency to develop and publish a guidance framework of ambient water quality criteria with designated uses and assessment procedures for dissolved oxygen, water clarity, and chlorophyll a for Chesapeake Bay and its tidal tributaries in 2003. This article reviews the derivation of the water quality criteria, criteria assessment protocols, designated use boundaries, and their refinements published in six addendum documents since 2003 and successfully adopted into each jurisdiction's water quality standards used in developing the Chesapeake Bay Total Maximum Daily Load.

Workload, mental health and burnout indicators among female physicians.

PubMed

Győrffy, Zsuzsa; Dweik, Diana; Girasek, Edmond

2016-04-01

Female doctors in Hungary have worse indicators of physical and mental health compared with other professional women. We aimed to cast light on possible indicators of mental health, workload, and burnout of female physicians. Two time-points (T) were compared, in 2003 (T1 n = 408) and 2013 (T2 n = 2414), based on two nationally representative surveys of female doctors, and comparison made with data from other professional control groups. Independent samples t test or chi-squared test was used both for the two time-point comparison and the comparison between the index and the control groups. The background factors of sleep disorders and burnout were assessed by binary logistic regression analysis. No significant differences in the rates of depressive symptoms and suicidal thoughts and attempts were detected between the 2003 and 2013 cohorts, but the prevalence of sleep disorders increased. The workload increased, and there was less job satisfaction in 2013 than in 2003, coupled to more stressful or difficult work-related situations. The personal accomplishment component of burnout significantly decreased in line with the declining work-related satisfaction. Compared to the professional control groups, the prevalence of depressive symptoms, suicide attempts, and sleep disorders was higher among female physicians at both time-points. The number of workplaces, frequency of work-related stressful situations, and intensive role conflict was associated with sleep disorders and decreased personal accomplishment. In comparison with the other professional groups, female doctors had worse mental health indicators with regard to depression, suicidal ideas, and sleep disorders both in 2003 and 2013 while within professional strata the changes seemed to be less. Increasing workload had a clear impact on sleep disorders and the personal accomplishment dimension of burnout.

A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003.

PubMed

Alvarez-Martin, Pablo; O'Connell Motherway, Mary; Turroni, Francesca; Foroni, Elena; Ventura, Marco; van Sinderen, Douwe

2012-10-01

This work reports on the identification and molecular characterization of a two-component regulatory system (2CRS), encoded by serRK, which is believed to control the expression of the ser(2003) locus in Bifidobacterium breve UCC2003. The ser(2003) locus consists of two genes, Bbr_1319 (sagA) and Bbr_1320 (serU), which are predicted to encode a hypothetical membrane-associated protein and a serpin-like protein, respectively. The response regulator SerR was shown to bind to the promoter region of ser(2003), and the probable recognition sequence of SerR was determined by a combinatorial approach of in vitro site-directed mutagenesis coupled to transcriptional fusion and electrophoretic mobility shift assays (EMSAs). The importance of the serRK 2CRS in the response of B. breve to protease-mediated induction was confirmed by generating a B. breve serR insertion mutant, which was shown to exhibit altered ser(2003) transcriptional induction patterns compared to the parent strain, UCC2003. Interestingly, the analysis of a B. breve serU mutant revealed that the SerRK signaling pathway appears to include a SerU-dependent autoregulatory loop.

A Two-Component Regulatory System Controls Autoregulated Serpin Expression in Bifidobacterium breve UCC2003

PubMed Central

Alvarez-Martin, Pablo; O'Connell Motherway, Mary; Turroni, Francesca; Foroni, Elena; Ventura, Marco

2012-01-01

This work reports on the identification and molecular characterization of a two-component regulatory system (2CRS), encoded by serRK, which is believed to control the expression of the ser2003 locus in Bifidobacterium breve UCC2003. The ser2003 locus consists of two genes, Bbr_1319 (sagA) and Bbr_1320 (serU), which are predicted to encode a hypothetical membrane-associated protein and a serpin-like protein, respectively. The response regulator SerR was shown to bind to the promoter region of ser2003, and the probable recognition sequence of SerR was determined by a combinatorial approach of in vitro site-directed mutagenesis coupled to transcriptional fusion and electrophoretic mobility shift assays (EMSAs). The importance of the serRK 2CRS in the response of B. breve to protease-mediated induction was confirmed by generating a B. breve serR insertion mutant, which was shown to exhibit altered ser2003 transcriptional induction patterns compared to the parent strain, UCC2003. Interestingly, the analysis of a B. breve serU mutant revealed that the SerRK signaling pathway appears to include a SerU-dependent autoregulatory loop. PMID:22843530

Volatile Substance Abuse: A Review of Findings in ESPAD 2003

ERIC Educational Resources Information Center

Ives, Richard

2006-01-01

Volatile substance abuse (VSA) is an under-recognized worldwide problem. Data, especially international comparisons, are limited. The 2005 ESPAD report published data on VSA from 35 countries, collected in 2003. Lifetime prevalence of VSA can be as high as 22%, with little difference between boys and girls in most countries. Perceived risk of VSA…

An Analysis of Generational Differences Among Civil Servants

DTIC Science & Technology

2004-03-01

studied differences between Baby Boomers (born 1946 – 1964), Generation Xers (born 1965 – 1977), and Millenials (born 1978 – 1995). They found that... Millenials (1979-1994) Cufaude (2000) Matures (1909-1945) Boomers (1946-1964) Generation X...Comparison Table Smola & Sutton (2002) Study Sample (2003) 2003 Survey Items Boomers Gen-X Boomers Gen-X Millenials DESIRABILITY OF WORK OUTCOMESa

Where Immigrant Students Succeed: A Comparative Review of Performance and Engagement in PISA 2003

ERIC Educational Resources Information Center

Schleicher, Andreas

2006-01-01

This report examines how immigrant students performed, mainly in mathematics and reading, but also in science and problem-solving skills in the PISA 2003 assessment, both in comparison with native students in their adopted country and relative to other students across all countries covered in the report (the "case countries"). In…

Finished Genome Sequence of Bacillus cereus Strain 03BB87, a Clinical Isolate with B. anthracis Virulence Genes

DOE PAGES

Johnson, Shannon L.; Minogue, Timothy D.; Teshima, Hazuki; ...

2015-01-15

Bacillus cereus strain 03BB87, a blood culture isolate, originated in a 56-year-old male muller operator with a fatal case of pneumonia in 2003. Here we present the finished genome sequence of that pathogen, including a 5.46-Mb chromosome and two plasmids (209 and 52 Kb, respectively).

Excimer Emission from Alkali Diatomic and Alkaline-Earth-Noble-Gas Molecules

DTIC Science & Technology

1989-10-01

line at 792 nm is also shown as a solid line for 1.18 ami . respectively. The oven temperature and buffer gas comparison. The oven contained pure sodium...Hasselbrink, and G. Hillrichs. Chem. Phys. Lett. 30J. Huennekens, H. J. Park, T. Colbert , and S. C. McClain. 112,441 (1984). Phys. Rev. A 35, 2892 (1987). 15R

A technique for directly comparing radiances from two satellites

NASA Technical Reports Server (NTRS)

Mcpeters, Richard D.

1990-01-01

Solar Backscattering Ultraviolet-2 (SBUV/2) instrument on NOAA-9 orbit on June 1987, solar zenith angles of the observations; plot of weekly average differences between SBUV (Nimbus-7 and SBUV/2 (NOAA-9); radiance comparisons for March 1986; time dependence of relative change between SBUV and SBUV/2; and explicit wavelength dependence are presented in viewgraph format. Each is briefly discussed.

Disposition at Discharge and 60-Day Mortality among Elderly People Following Shorter Hospital Stays: A Population-Based Comparison.

ERIC Educational Resources Information Center

Leibson, Cynthia; And Others

1990-01-01

Examination of hospitalizations for 5,854 elderly adults for 1980, 1985, and 1987 revealed significant increases in 60-day mortality and nursing home transfers after Medicare's Prospective Payment System began and hospital stays were shortened. Increases were largely explained by differences in risk factors other than length of stay (age, gender,…

Library Literacy Project, 1987-88. Pottsville, Pennsylvania, Free Public Library.

ERIC Educational Resources Information Center

Smink, Nancy J.

This project was undertaken by a public library to assess and address the continuing literacy needs of the local county's population. Comparison of the results of pre- and post-grant surveys conducted to determine the level of the residents' awareness of the problems of illiteracy showed an increase from 60% to 81% in the number who knew about the…

Methodological issues using household budget survey expenditure data for individual food availability estimation: Irish experience in the DAFNE pan-European project. DAta Food NEtworking.

PubMed

Friel, S; Nelson, M; McCormack, K; Kelleher, C; Thriskos, P

2001-10-01

Irish participation in the EU-supported DAta Food NEtworking (DAFNE) project required compliance with the overall aims and objectives. The Irish Household Budget Survey (HBS) expenditure data had to be transformed into a format compatible with the collaborative effort, by converting them into quantities of foodstuffs available per person per day. The Irish 1987 HBS expenditure data on all commodities for 7705 households in the Republic of Ireland, collected using a 14-day diary kept by all members of the household aged 15 years and over. Following identification of 188 food items in the HBS dataset, retail prices per unit weight were sought for each food. Adjustment of prices, collected from a number of different sources, was made to those of 1987 using the Consumer Price Index. Simple models were used to estimate household food availability through application of the adjusted retail prices per unit weight to the expenditure data. The household level data were converted to food availability per person per day. An internal validation of quantities estimated using the retail prices was made using the 12 foodstuffs for which the Irish HBS collects expenses and quantities. The comparison of quantities published by the Irish Central Statistics Office for 12 foodstuffs in the Irish 1987 Household Budget Survey with the quantities estimated using equivalent expenditure data and corresponding retail prices showed agreement, with less than a 10% margin of error for 10 of the foods. In spite some difficulty in converting HBS food expenditure data into food availability per person per day, the DAFNE approach is potentially useful for Irish nutrition surveillance purposes and for facilitating comparisons of the Irish HBS food data with those of other European countries.

Mission strategy for cometary exploration in the 1980's

NASA Technical Reports Server (NTRS)

Farquhar, R. W.

1974-01-01

A sequence of ballistic intercept missions to comets is proposed. The mission set is composed of a well-known group of periodic comets whose physical properties are dissimilar. In addition to full descriptions of the nominal mission profiles, earth-based sighting conditions and estimates of cometary ephemeris errors are presented for each target comet. The first mission of the sequence is a slow flyby (approximately 8 km/sec) of Encke's comet near its perihelion in 1980. Because of a near resonance in the orbital periods of Encke and the spacecraft, it is possible to retarget the spacecraft for a second Encke encounter in 1984. The second mission of the sequence also consists of two cometary encounters but in this case different comets are involved; Giacobini-Zinner in 1985 and Borrelly in 1987. The final mission of the sequence calls for a simultaneous launch of two spacecraft towards Halley's comet in 1985. One spacecraft is targeted fo a pre-perihelion intercept at a heliocentric distance of 1.37 AU.

Phylodynamic and Phylogeographic Patterns of the HIV Type 1 Subtype F1 Parenteral Epidemic in Romania

PubMed Central

Hué, Stéphane; Buckton, Andrew J.; Myers, Richard E.; Duiculescu, Dan; Ene, Luminita; Oprea, Cristiana; Tardei, Gratiela; Rugina, Sorin; Mardarescu, Mariana; Floch, Corinne; Notheis, Gundula; Zöhrer, Bettina; Cane, Patricia A.; Pillay, Deenan

2012-01-01

Abstract In the late 1980s an HIV-1 epidemic emerged in Romania that was dominated by subtype F1. The main route of infection is believed to be parenteral transmission in children. We sequenced partial pol coding regions of 70 subtype F1 samples from children and adolescents from the PENTA-EPPICC network of which 67 were from Romania. Phylogenetic reconstruction using the sequences and other publically available global subtype F sequences showed that 79% of Romanian F1 sequences formed a statistically robust monophyletic cluster. The monophyletic cluster was epidemiologically linked to parenteral transmission in children. Coalescent-based analysis dated the origins of the parenteral epidemic to 1983 [1981–1987; 95% HPD]. The analysis also shows that the epidemic's effective population size has remained fairly constant since the early 1990s suggesting limited onward spread of the virus within the population. Furthermore, phylogeographic analysis suggests that the root location of the parenteral epidemic was Bucharest. PMID:22251065

Accident sequence precursor events with age-related contributors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Murphy, G.A.; Kohn, W.E.

1995-12-31

The Accident Sequence Precursor (ASP) Program at ORNL analyzed about 14.000 Licensee Event Reports (LERs) filed by US nuclear power plants 1987--1993. There were 193 events identified as precursors to potential severe core accident sequences. These are reported in G/CR-4674. Volumes 7 through 20. Under the NRC Nuclear Plant Aging Research program, the authors evaluated these events to determine the extent to which component aging played a role. Events were selected that involved age-related equipment degradation that initiated an event or contributed to an event sequence. For the 7-year period, ORNL identified 36 events that involved aging degradation as amore » contributor to an ASP event. Except for 1992, the percentage of age-related events within the total number of ASP events over the 7-year period ({approximately}19%) appears fairly consistent up to 1991. No correlation between plant ape and number of precursor events was found. A summary list of the age-related events is presented in the report.« less

Analysis of the Impact of Data Normalization on Cyber Event Correlation Query Performance

DTIC Science & Technology

2012-03-01

2003). Organizations use it in planning, target marketing , decision-making, data analysis, and customer services (Shin, 2003). Organizations that...Following this IP address is a router message sequence number. This is a globally unique number for each router terminal and can range from...Appendix G, invokes the PERL parser for the log files from a particular USAF base, and invokes the CTL file that loads the resultant CSV file into the

Comparison of PAN and Black Carbon Levels in Mexico City: 1997 and 2003

NASA Astrophysics Data System (ADS)

Gaffney, J. S.; Marley, N. A.

2004-12-01

Peroxyacetyl nitrate (PAN) is a secondary oxidant formed by the oxidation of hydrocarbons in the presence of nitrogen dioxide. PAN is a good indicator compound for hydrocarbon reactivity that leads to ozone formation. Black carbon (BC) is formed by incomplete combustion processes such as diesel soot formation and is a good indicator of primary carbonaceous aerosols in urban areas. We used a fast-response luminol method to measure PAN and BC during the Mexico City Metropolitan Area 2003/Mexico City Megacity 2003 field study in April 2003. We compare these results with our previous PAN measurements in Mexico City during February 1997, made with a gas chromatograph-electron capture detector system. The decreased PAN levels observed in 2003 are consistent with the application of emissions controls on spark ignition gasoline-fueled vehicles, leading to lower levels of the nitrogen oxides and reactive volatile hydrocarbons needed to form PAN. Black carbon data for Mexico City in 2003, taken with a seven-channel aethalometer, are compared with data from 1997, estimated from thermal analyses as elemental carbon (EC). The comparison indicates little change in the levels of BC/EC over the six-year period. This observation is consistent with the application of minimal controls to diesel engines, the likely major source of BC in the Mexico City megacity complex during this period. The authors wish to thank the researchers at Centro Nacional de Investigación en Calidad Ambiental (CENICA), Mexico City. This work was supported by the U.S. Department of Energy, Atmospheric Science Program. We also wish to acknowledge Drs. Mario and Luisa Molina for their help in organizing and directing the Mexico City Metropolitan Area 2003 field study, during which these data were collected.

The extent of burning in African savanna

NASA Technical Reports Server (NTRS)

Cahoon, D. R. JR.; Levine, J. S.; Cofer, W. R. Iii; Stocks, B. J.

1994-01-01

The temporal and spatial distribution of African savanna grassland fires has been examined, and the areal extent of these fires has been estimated for the subequatorial African continent. African savanna fires have been investigated using remote sensing techniques and imagery collected by low-light sensors on Defense Meteorological Satellite Program (DMSP) satellites and by the Advanced Very High Resolution Radiometer (AVHRR) which is aboard polar orbiting National Oceanic and Atmospheric Administration (NOAA) satellites. DMSP imagery has been used to map the evolution of savanna burning over all of the African continent and the analysis of AVHRR imagery has been used to estimate the areal extent of the burning in the southern hemispheric African savannas. The work presented primarily reflects the analysiscompleted for the year 1987. However, comparisons have been made with other years and the representativeness of the 1987 analysis is discussed.

Analysis of the deconstruction of Dyke Marsh, George Washington Memorial Parkway, Virginia-Progression, geologic and manmade causes, and effective restoration scenarios

USGS Publications Warehouse

Litwin, Ronald J.; Smoot, Joseph P.; Pavich, Milan J.; Markewich, Helaine W.; Oberg, Erik; Helwig, Ben; Steury, Brent; Santucci, Vincent L.; Durika, Nancy J.; Rybicki, Nancy B.; Engelhardt, Katharina M.; Sanders, Geoffrey; Verardo, Stacey; Elmore, Andrew J.; Gilmer, Joseph

2011-01-01

Photoanalysis of time-sequence aerial photographs of Dyke Marsh enabled us to calculate shoreline erosion estimates for this marsh over 19 years (1987-2006), as well as to quantify overall marsh acreage for 6 calendar years spanning an ~70 year interval (1937-2006). Photo overlay of a historic map enabled us to extend our whole-marsh acreage calculations back to 1883. Both sets of analyses were part of a geologic framework study in support of current efforts by the National Park Service (NPS) to restore this urban wetland. Two time intervals were selected for our shoreline erosion analyses, based on image quality and availability: 1987 to 2002, and 2002 to 2006. The more recent time interval shows a marked increase in erosion in the southern part of Dyke Marsh, following a wave-induced breach of a small peninsula that had protected its southern shoreline. Field observations and analyses of annual aerial imagery between 1987 and 2006 revealed a progressive increase in wave-induced erosion that presently is deconstructing Hog Island Gut, the last significant tidal creek network within the Dyke Marsh. These photo analyses documented an overall average westward shoreline loss of 6.0 to 7.8 linear feet per year along the Potomac River during this 19-year time interval. Additionally, photographic evidence documented that lateral erosion now is capturing existing higher order tributaries in the Hog Island Gut. Wave-driven stream piracy is fragmenting the remaining marsh habitat, and therefore its connectivity, relatively rapidly, causing the effective mouth of the Hog Island Gut tidal network to retreat headward visibly over the past several decades. Based on our estimates of total marsh area in the Dyke Marsh derived from 1987 aerial imagery, as much as 12 percent of the central part of the marsh has eroded in the 19 year period we studied (or ~7.5 percent of the original ~78.8 acres of 1987 marshland). Shoreline loss estimates for marsh parcels north and south of our study area have not yet been analyzed, although annual aerial photos from 1987 to 2002 confirm visible progressive shoreline loss in those areas over this same time interval.

An insight to the eruption mechanism of volcanic rocks in North Tibet: Project TITAN

NASA Astrophysics Data System (ADS)

He, R.; Gao, R.; Li, Q.

2013-12-01

Since Cenozoic continent-continental collision between India and Asia [Yin and Harrison, 2000], many surface features happened within the plateau were prominent. As one of them, high-to-ultra potassic lavas of Neogene, even younger, are widely distributed in NW Tibet, as shown in Figure1. Obvious petrological and geochemical characteristics of those lavas [Turner et al., 1993; Deng et al., 1996; Hacker et al., 2000; Ding et al., 2003; Williams et al., 2004; Chung et al., 2005; Luo et al., 2006; Guo et al., 2006] were presumably associated with extensional collapse of the lithospheric mantle [Deng et al., 1998; Li et al., 2000; Ding et al., 2003; Williams et al., 2004; Chung et al., 2005; Luo et al., 2006; Guo et al., 2006], which started at about 4Ma [Yin et al., 1999] and still goes on [Lin et al., 2002]. (1) What kinetics happened within the lithosphere beneath the lava region since Late Neogene? (2) What kind of mechanism leads to the lava eruption, it is only the result of far-long effect of northward subduction of the India plate, or directly related to the south margin of the Asian lithosphere, or bilaterally affected by India and Asia plate, or other factors? (3) Why did the strong volcanic activities only wrecked the North Qiangtang terrane, Jinshajiang suture and Hoh Xil terrane, instead of going northward across Altyn Tagh Fault and East Kunlun? As is known, to reveal the scientific secret concealed in lavas within NW Tibet geophysical observations are very necessary and urgent. NW Tibet including North Qiangtang and Hoh Xil is a very tough region for human beings. The project for geophysical observatory in the region is named as TITAN. TITAN has currently made some great progress, such as 103 broadband Seismic observation stations were deployed along longitude 88.5E in recent 5 years, as shown in Figure 1. Some primary results were got, such as (1) P-velocity structure from teleseismic tomography around Shuanghu in central Qiangtang (Figure 2) showed that the central uplift of Qiangtang [Wang et al., 1987; Kapp et al., 2003] surely had a characteristic of suture zone as Shuanghu Suture named by Li et al. [1987, 2001]. (2) P-velocity structure from teleseismic tomography beneath the lava region showed that the low anomalous body of those lavas is not more than 130 km depth, that agrees well with inference of geochemistry evidences [Ding et al., 2003; Williams et al., 2004; Chung et al., 2005; Luo et al., 2006]. (3) Isostatic gravity analysis showed that the lower crust and upper mantle were characterized by much lower density because of serious material loss, which suggested that the lower crust and upper mantle are still strongly interacting. References( be omitted to save)

DNA Data Bank of Japan

PubMed Central

Mashima, Jun; Kodama, Yuichi; Fujisawa, Takatomo; Katayama, Toshiaki; Okuda, Yoshihiro; Kaminuma, Eli; Ogasawara, Osamu; Okubo, Kousaku; Nakamura, Yasukazu; Takagi, Toshihisa

2017-01-01

The DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) has been providing public data services for thirty years (since 1987). We are collecting nucleotide sequence data from researchers as a member of the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc.org), in collaboration with the US National Center for Biotechnology Information (NCBI) and European Bioinformatics Institute (EBI). The DDBJ Center also services Japanese Genotype-phenotype Archive (JGA), with the National Bioscience Database Center to collect human-subjected data from Japanese researchers. Here, we report our database activities for INSDC and JGA over the past year, and introduce retrieval and analytical services running on our supercomputer system and their recent modifications. Furthermore, with the Database Center for Life Science, the DDBJ Center improves semantic web technologies to integrate and to share biological data, for providing the RDF version of the sequence data. PMID:27924010

Extended Main-sequence Turn-offs in Intermediate-age Star Clusters: Stellar Rotation Diminishes, but Does Not Eliminate, Age Spreads

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goudfrooij, Paul; Correnti, Matteo; Girardi, Léo, E-mail: goudfroo@stsci.edu

Extended main-sequence turn-off (eMSTO) regions are a common feature in color–magnitude diagrams of young- and intermediate-age star clusters in the Magellanic Clouds. The nature of eMSTOs remains debated in the literature. The currently most popular scenarios are extended star formation activity and ranges of stellar rotation rates. Here we study details of differences in main-sequence turn-off (MSTO) morphology expected from spreads in age versus spreads in rotation rates, using Monte Carlo simulations with the Geneva syclist isochrone models that include the effects of stellar rotation. We confirm a recent finding of Niederhofer et al. that a distribution of stellar rotationmore » velocities yields an MSTO extent that is proportional to the cluster age, as observed. However, we find that stellar rotation yields MSTO crosscut widths that are generally smaller than observed ones at a given age. We compare the simulations with high-quality Hubble Space Telescope data of NGC 1987 and NGC 2249, which are the two only relatively massive star clusters with an age of ∼1 Gyr for which such data is available. We find that the distribution of stars across the eMSTOs of these clusters cannot be explained solely by a distribution of stellar rotation velocities, unless the orientations of rapidly rotating stars are heavily biased toward an equator-on configuration. Under the assumption of random viewing angles, stellar rotation can account for ∼60% and ∼40% of the observed FWHM widths of the eMSTOs of NGC 1987 and NGC 2249, respectively. In contrast, a combination of distributions of stellar rotation velocities and stellar ages fits the observed eMSTO morphologies very well.« less

Host Cell Virus Entry Mediated by Australian Bat Lyssavirus Envelope G glycoprotein

DTIC Science & Technology

2013-10-24

39 Figure 7. Comparison of the amino acid sequences of Saccolaimus and Pteropus ABLV G mature protein... sequence analysis revealed that the PCR products were identical. Sequence comparisons of the ABLV N and other lyssavirus N proteins showed that ABLV...Saccolaimus flaviventris) (129). Nucleoprotein sequence comparisons revealed that the Saccolaimus N protein shared 96% amino acid homology with the Pteropus

Comparison of fast electric field changes from subsequent return strokes of natural and triggered lightning

NASA Technical Reports Server (NTRS)

Le Vine, D. M.; Willett, J. C.; Bailey, J. C.

1989-01-01

Fast electric field changes from subsequent return strokes of natural and triggered lightning with propagation paths almost entirely over water are compared. Data were collected at the Kennedy Space Center, Florida, during the summer of 1987. Comparisons have been made of the average shape, the risetime, and the spectrum of the electric field changes. To a first approximation, the waveforms are very similar; however, the electric field changes from the triggered flashes tend to rise to peak faster and decay faster than do their counterparts in natural cloud-to-ground flashes.

Lake Ontario water quality during the 2003 and 2008 intensive field years and comparison with long-term trends

USGS Publications Warehouse

Holeck, K. T.; Rudstam, L. G.; Watkins, J. M.; Luckey, F. J.; Lantry, J. R.; Lantry, Brian F.; Trometer, E. S.; Koops, M. A.; Johnson, Terry B.

2015-01-01

Phosphorus loading declined between the 1970s and the 1990s, leading to oligotrophication of the offshore waters of Lake Ontario during that time period. Using lake-wide data from the intensive field years of 2003 and 2008 and from available long-term data sets on several trophic state indicators (total phosphorus [TP], soluble reactive silica [SRSi], chlorophyll a and Secchi disc transparency [SDT]), we tested the hypothesis that oligotrophication of the offshore waters of Lake Ontario has continued in the 2000s. Significant differences between 2003 and 2008 include higher spring (April) TP, SRSi, and SDT in 2008, lower summer (July–August) SDT in 2008, higher summer chlorophyll a in 2008, and lower fall (September) TP, SRSi, and chlorophyll a in 2008. The decline in SRSi from spring to summer was greater in 2008 than in 2003. Change point and regression analyses on the long-term data revealed no trend in spring TP since 1996, in summer chlorophyll a since 1994, in spring SDT since 1998, in spring SRSi or SRSi decline from spring to summer since 1999, or in summer SDT since 2001. Neither the comparison of the 2003 and 2008 surveys nor the analysis of the long-term data supported our hypothesis of continued oligotrophication of the offshore of Lake Ontario in the 2000s.

An Analysis of Generational Differences Among Active Duty Members

DTIC Science & Technology

2004-03-01

studied differences between Baby Boomers (born 1946 – 1964), Generation Xers (born 1965 – 1977), and Millenials (born 1978 – 1995). They found that work...1946-1964) Generation X (1965-1978) Millenials (1979-1994) Cufaude (2000) Matures (1909-1945...Mean & Standard Deviation Comparison Smola & Sutton (2002) Study Sample (2003) 2003 Survey Items Boomers Gen-X Boomers Gen-X Millenials

Making Graphical Inferences: A Hierarchical Framework

DTIC Science & Technology

2004-08-01

from graphs is considered one of the more complex skills graph readers should possess. According to the National Council of Teachers of Mathematics ...understanding graphical perception. Human Computer Interaction, 8, 353-388. NCTM : Standards for Mathematics . (2003, 2003). Pinker, S. (1990). A theory... NCTM ) the simplest type of question involves the extraction or comparison of a few explicitly represented data points (read-offs) ( NCTM : Standards

Molecular Genetic and Gene Therapy Studies of the Musculoskeletal System

DTIC Science & Technology

2009-09-01

C 1999 Sequence requirements for plasmid nuclear import. Exp Cell Res 253(2):713- 22 . 8). Young J L, Benoit J N, Dean D A 2003 Effect of a DNA nuclear...31. Culig Z (2004) Androgen receptor cross-talk with cell signaling pathways. Growth Factors 22 :179–184 382 X. Wang et al.: Effect of Leptin on Bone... Cell Biol. 2003:13:435-446 43. Watanabe N, Higashida C. Formins: processive cappers of growing actin filaments. Exp. Cell Res. 2004:301:16- 22 44

A quantitative assessment of educational integration of students with Down syndrome in the Netherlands.

PubMed

De Graaf, G; Van Hove, G; Haveman, M

2014-07-01

In the Netherlands, as in many other countries, there are indications of an inclusive school policy for children with Down syndrome. However, there is a lack of studies that evaluate to what extent this policy has actually succeeded in supporting the mainstreaming of these students. For the period 1984-2011, the number of children with Down syndrome entering regular education and the percentage of children still in regular education after 1-7 years were estimated on basis of samples from the database of the Dutch Down Syndrome Foundation. These estimations were combined with historical demographic data on the total number of children with Down syndrome in primary school age. Validity of the model was examined by comparison of the model-based estimations of numbers and percentages in regular education with relevant available empirical data from the Dutch Ministry of Education and from Dutch special schools. The percentage of all children with Down syndrome in the age range 4-13 in regular primary education has risen from 1% or 2% (at the very most about 20 children) in 1986-1987, to 10% (about 140 children) in 1991-1992, to 25% (about 400) in 1996-1997, to 35% (about 650) in 2001-2002 and to 37% (about 800) since 2005-2006. The proportional increase stopped in recent years. During the 1980s and 1990s, clearly more and more children with Down syndrome were in regular education, being supported by the then existing ad hoc regulations aimed at providing extra support in regular education. In the Netherlands, in 2003, these temporary regulations were transformed into structural legislation for children with disabilities. With regard to the mainstreaming of students with Down syndrome, the 2003 legislation has consolidated the situation. However, as percentages in regular education stayed fairly constant after 2000, it has failed to boost the mainstreaming of children with Down syndrome. The results of this study are discussed in the context of national and international legislation and educational policy. © 2013 MENCAP and International Association of the Scientific Study of Intellectual and Developmental Disabilities and John Wiley & Sons Ltd.

Terrorism and the Crash of KAL Flight 858: A Comparison of U.S. and South Korean Newspaper Coverage.

ERIC Educational Resources Information Center

Salwen, Michael B.; Lee, Jung-Sook

A case study compared United States and South Korean press coverage of the crash of the November 29, 1987, Korean Air Lines (KAL) flight 858, to examine how the press reported the terrorism angle before evidence supporting the charges of terrorism was uncovered. Stories dealing with the crash reported in four prestigious United States newspapers…

Recruitment and Retention of Minority Students in Teacher Education. Proceedings of the National Invitational Conference (Lexington, Kentucky, March 29-April 1, 1987).

ERIC Educational Resources Information Center

Middleton, Ernest J., Ed.; Mason, Emanuel J., Ed.

Presentations at this conference focused on the following topics: (1) the recruitment and retention of minorities in teacher education; (2) history and social psychology of the issue; (3) futuristic views and minority participation in the 1990s; (4) comparison of teacher education programs in traditionally black and white institutions; (5)…

Comparison of estimates of snow input to a small alpine watershed

Treesearch

R. A. Sommerfeld; R. C. Musselman; G. L. Wooldridge

1990-01-01

We have used five methods to estimate the snow water equivalent input to the Glacier Lakes Ecosystem Experiments Site (GLEES) in south-central Wyoming during the winter 1987-1988 and to obtain an estimate of the errors. The methods are: (1) the Martinec and Rango degree-day method; (2) Wooldridge et al. method of determining the average yearly snowfall from tree...

13C and 15N Solid State MMR Characterization of Aramid-Containing Nylon-6 by In Situ Polymerization with Benzoyl Caprolactam Derivatives.

DTIC Science & Technology

1987-12-01

areas consistant with the alternating copolymer structure. Comparison with the model acetanilide (-241.9) indicates the downfield resonance is due to the...Deguchi, l.; Ando, 1. Macromclecule’-, 1987, 20, 2441. 4 S..:! TABLE I CP-NIAS u N-methyl benzainide -23. 3 2 Acetanilide -241.9 ’iC poly(p-benzamide

Cow weights and calf production for pasture 12-C Lehmann lovegrass grazing trials, 1982 to 1993

Treesearch

Phil R. Ogden; E. Lamar Smith

2003-01-01

The purpose of the grazing trials described in this paper was to provide information to aid in the development of grazing management strategies where Lehmann lovegrass has become a dominant species. Seven pastures were utilized from 1984 to 1987 for a comparison of four yearlong stocking rates to seasonal grazing rotated through three pastures. A second trial, 1988 to...

A comparison of leisure constraints among three outdoor recreation activities: whitewater rafting, canoeing and overnight horseback riding

Treesearch

Gyan P. Nyaupane; Duarte B. Morais; Alan Graefe

2003-01-01

The purpose of this study was to compare leisure constraints across three outdoor recreation activities, whitewater rafting, canoeing, and overnight horseback riding, in the context of the three-dimensional leisure constraints model proposed by Crawford and Godbey (1987). The sample consisted of 650 outdoor enthusiasts from 14 U.S. states who showed an interest in...

VIII Workshop on Catastrophic Disruption in the Solar System

NASA Astrophysics Data System (ADS)

Michel, Patrick; Nakamura, Akiko M.; Bagatin, Adriano Campo

2015-03-01

The Catastrophic Disruption (CD) Workshops have become a tradition for the various communities interested in collisional processes. The first one was organized in 1985 by the missed Prof. Paolo Farinella from the University of Pisa and his colleague Paolo Paolicchi, who understood the fundamental importance of collisional processes in the history of the Solar System. It was followed by subsequent workshops in Belgrade (Serbia, 1987), Kyoto (Japan, 1990), Gubbio (Italy, 1993), the Timberline Lodge (Oregon, USA, 1998), Cannes (France, 2003) and Alicante (Spain, 2007). The CD workshops are typically separated by 3-6 years, accounting for the required amount of time to perform subsequent advances in the field motivating the interest of the relevant scientific community for getting together to discuss new results and evolving directions in the field.

A structural econometric model of family valuation and choice of employer-sponsored health insurance in the United States.

PubMed

Vanness, David J

2003-09-01

This paper estimates a fully structural unitary household model of employment and health insurance decisions for dual wage-earner families with children in the United States, using data from the 1987 National Medical Expenditure Survey. Families choose hours of work and the breakdown of compensation between cash wages and health insurance benefits for each wage earner in order to maximize expected utility under uncertain need for medical care. Heterogeneous demand for the employer-sponsored health insurance is thus generated directly from variations in health status and earning potential. The paper concludes by discussing the benefits of using structural models for simulating welfare effects of insurance reform relative to the costly assumptions that must be imposed for identification. Copyright 2003 John Wiley & Sons, Ltd.

Industrial Production of Therapeutic Proteins: Cell Lines, Cell Culture, and Purification

NASA Astrophysics Data System (ADS)

Zhu, Marie M.; Mollet, Michael; Hubert, Rene S.

The biotechnology and pharmaceutical industries have seen a recent surge in the development of biological drug products manufactured from engineered mammalian cell lines. Since the hugely successful launch of human tissue plasminogen activator in 1987 and erythropoietin in 1988, the biopharmaceutical market has grown immensely. Global sales in 2003 exceeded US 30 billion.1 Currently, a total of 108 biotherapeutics are approved and available to patients (Table 32.1). In addition, 324 medically related, biotechnology-derived medicines for nearly 150 diseases are in clinical trials or under review by the U.S. Food and Drug Administration.2 These biopharmaceutical candidates promise to bring more and better treatments to patients. Compared to small molecule drugs, biotherapeutics show exquisite specificity with fewer off-target interactions and improved safety profiles.

Twelve-year follow-up study of the impact of nutritional status at the onset of elementary school on later educational situation of Chilean school-age children.

PubMed

Ivanovic, D; Del P Rodríguez, M; Pérez, H; Alvear, J; Díaz, N; Leyton, B; Almagià, A; Toro, T; Urrutia, M S; Ivanovic, R

2008-01-01

To determine the impact of nutritional status in a multicausal approach of socio-economic, socio-cultural, family, intellectual, educational and demographic variables at the onset of elementary school in 1987 on the educational situation of these children in 1998, when they should have graduated from high school. Chile's Metropolitan Region. Prospective, observational and 12-year follow-up study. A representative sample of 813 elementary first grade school-age children was randomly chosen in 1987. The sample was assessed in two cross-sectional studies. The first cross-sectional study was carried out in at the onset of elementary school in 1987 and the second was carried out in 1998, 12-years later, when they should be graduating from high school. In 1998, 632 adolescent students were located and their educational situation was registered (dropout, delayed, graduated and not located). At the onset of elementary school were determined the nutritional status, socio-economic status (SES), family characteristics, intellectual ability (IA), scholastic achievement (SA) and demographic variables. Statistical analysis included variance tests and Scheffe's test was used for comparison of means. Pearson correlation coefficients and logistic regression were used to establish the most important independent variables at the onset of elementary school in 1987 that affect the educational situation 1998. Data were analysed using the statistical analysis system (SAS). Logistic regression revealed that SES, IA, SA and head circumference-for-age Z score at the onset of elementary school in 1987 were the independent variables with the greatest explanatory power in the educational situation of school-age children in 1998. These parameters at an early school age are good predictors of the educational situation later and these results can be useful for nutrition and educational planning in early childhood.

[Follow-up examination of Danish stainless steel welders previously examined in 1987].

PubMed

Knudsen, Lisbeth Ehlert; Burr, Herman

2003-07-14

A Danish cohort from 1987 consisting of 226 stainless steel welders and reference persons is part of the European Study Group on Cytogenetic Biomarkers and Health (ESCH). In ESCH increased cancer morbidity and mortality was significantly associated with high levels of chromosomal aberrations, measured in blood samples several years prior to cancer registration. The positive association was found in two cohorts from the Nordic countries and from Italy. ESCH followed all registered cancer cases and control persons by questionnaires and interviews to obtain information about exposures in the period from the time of blood sampling for chromosomal aberration analysis to the time of cancer diagnosis. In Denmark the total cohort was included in the inquiry and the ESCH questions were supplemented with questions from the Danish National Work Environment Cohort Study 1990-95. Responses from one hundred and forty-four persons showed that seventy-four were employed at the same workplace place as in 1987. Differences in occupational exposures, such as more noise, heat and insufficient lighting and no differences in the self-rated health were found in comparison with the Danish National Work Environment Cohort Study as such and with the sample of metal workers. Only very few of the study persons knew the threshold limit value of welding fumes but a majority found that the working environment had improved during the past ten years. This study confirms hazardous exposures in stainless steel welding. The threshold limit value, however, has been lowered since 1987 suggesting there is less cancer risk today from stainless steel welding.

Accounting for age Structure in Ponderosa Pine Ecosystem Analyses: Integrating Management, Disturbance Histories and Observations with the BIOME-BGC Model

NASA Astrophysics Data System (ADS)

Hibbard, K. A.; Law, B.; Thornton, P.

2003-12-01

Disturbance and management regimes in forested ecosystems have been recently highlighted as important factors contributing to quantification of carbon stocks and fluxes. Disturbance events, such as stand-replacing fires and current management regimes that emphasize understory and tree thinning are primary suspects influencing ecosystem processes, including net ecosystem productivity (NEP) in forests of the Pacific Northwest. Several recent analyses have compared simulated to measured component stocks and fluxes of carbon in Ponderosa Pine (Pinus ponderosa var. Laws) at 12 sites ranging from 9 to 300 years in central Oregon (Law et al. 2001, Law et al. 2003) using the BIOME-BGC model. Major emphases on ecosystem model developments include improving allocation logic, integrating ecosystem processes with disturbance such as fire and including nitrogen in biogeochemical cycling. In Law et al. (2001, 2003), field observations prompted BIOME-BGC improvements including dynamic allocation of carbon to fine root mass through the life of a stand. A sequence of simulations was also designed to represent both management and disturbance histories for each site, however, current age structure of each sites wasn't addressed. Age structure, or cohort management has largely been ignored by ecosystem models, however, some studies have sought to incorporate stand age with disturbance and management (e.g. Hibbard et al. 2003). In this analyses, we regressed tree ages against height (R2 = 0.67) to develop a proportional distribution of age structure for each site. To preserve the integrity of the comparison between Law et al. (2003) and this study, we maintained the same timing of harvest, however, based on the distribution of age structures, we manipulated the amount of removal. Harvest by Law et al. (2003) was set at stand-replacement (99%) levels to simulate clear-cutting and reflecting the average top 10% of the age in each plot. For the young sites, we set removal at 73%, 51% and 61% for sites averaging 9,16 and 23 years, respectively. It was assumed that changes in long-term pools (e.g. soil C) were negligible within these timeframes. In Law et al. (2003), the model performed well for old and mature sites, however, model simulations of the younger sites (9-50Y) were weak compared to NEP estimates from observations. Error for the young plots in Law et al. (2003) ranged from 150 - >400% of observed NEP. By accounting for the observed age structure through harvest removal, model error from this study ranged from 20-90% in young plots. This study is one of a few that have sought to account for age structure in simulating ecosystem dynamics and processes.

Fatigue Crack Initiation Mechanics of Metal Aircraft Structures

DTIC Science & Technology

1988-08-01

Thresholds) (Ref. 6) and are included as Appendix A. In summary, two flow stresses were identified. Microplastic flow takes place in all grains at fully...R.O. Ritchie and E.A. Starke, EMAS, 93-101 (1987). 7. M.R. James and W.L. Morris, "Load Sequence Effects on the Deformation of Isolated Microplastic ...417 (1980). 17. M.R. James and W.L. Morris, "The Effect of Microplastic Surface Deformation on the Growth of Small Cracks," Small Fatigue Cracks, R.O

Summary of International Exhibition and Congress (3rd): BIOTECHNICA 󈨛 Hannover Held in Hannover (Germany, F.R.) on 22-24 September 1987

DTIC Science & Technology

1988-01-21

nucleic acids which occur in DNA and seem to play an e Improved theoretical analysis of the important role in determining gene reg’- fntra- and...developed two retroviral vectors, based on the murine new peptide-based animal vaccines which myeloproliferative sarcoma virus (MPSV), are currertly...Structure tides are part of a precursor molecule elucidation is performed by gas-phase composed of 126 amino acids. From a pre- amino acid sequence analysis

Molecular Biological Studies on the Biogenesis of Human Cholinesterases in vivo and as Directed by Cloned Cholinesterase DNA Sequences

DTIC Science & Technology

1990-10-24

amplifications. A considerable body of information, accumulated over the years, demonstrates cytotoxic and mutogenic effects for OP poisons. Pesticide -induced...occupational exposure to pesticides (306). However, the damage may not be limited to these high-risk groups of humans, since pesticide residues were found in...with amplification of the HER-2/neu oncogene. Science 235: 177-182 (1987). 296 Ahmed, F.; Hart, R.; Lewis, N. Pesticide induced DNA damage and its

Mapping of Monoclonal Antibody Binding Sites on CNBr Fragments of the S- Layer Protein Antigens of Rickettsia Typhi and Rickettsia Prowazekii

DTIC Science & Technology

1992-01-01

proita:ekii SPA each constitutes 10-15% of the total Research and Development Command. Research Task No cellular protein and is readily released by...modification. Selected in spaP (Carl et al., 1990). A stretch of amino acid which subsets of eucaryotic cellular proteins and bears some sequence...Publish- in procaryotes . J. Bacteriol. 170, 2891-2897. ing House of the Slovak Academy of Sciences, Bratislava. Streuli C. H. and Griffin B. E. (1987

30 YEARS OF THE MINERALOCORTICOID RECEPTOR: Mineralocorticoid receptor antagonists: 60 years of research and development

PubMed Central

Bärfacker, Lars

2017-01-01

The cDNA of the mineralocorticoid receptor (MR) was cloned 30 years ago, in 1987. At that time, spirolactone, the first generation of synthetic steroid-based MR antagonists (MRAs), which was identified in preclinical in vivo models, had already been in clinical use for 30 years. Subsequent decades of research and development by Searle & Co., Ciba-Geigy, Roussel Uclaf and Schering AG toward identifying a second generation of much more specific steroidal MRAs were all based on the initial 17-spirolactone construct. The salient example is eplerenone, first described in 1987, coincidentally with the cloning of MR cDNA. Its launch on the market in 2003 paralleled intensive drug discovery programs for a new generation of non-steroidal MRAs. Now, 30 years after the cDNA cloning of MR and 60 years of clinical use of steroidal MRAs, novel non-steroidal MRAs such as apararenone, esaxerenone and finerenone are in late-stage clinical trials in patients with heart failure, chronic kidney disease (CKD), hypertension and liver disease. Finerenone has already been studied in over 2000 patients with heart failure plus chronic kidney disease and/or diabetes, and in patients with diabetic kidney disease, in five phase II clinical trials. Here, we reflect on the history of the various generations of MRAs and review characteristics of the most important steroidal and non-steroidal MRAs. PMID:28634268

A comparison of food patterns equivalents intakes by Americans: What We Eat in America, NHANES 2003-2004 and 2011-2012

USDA-ARS?s Scientific Manuscript database

This report highlights the changes in the dietary intakes of selected USDA Food Patterns groups, including added sugars and solid fats, for the U.S. population from What We Eat in America, NHANES 2003-2004 and 2011-12. Study sample included 8,272 and 7,932 individuals, ages 2 years and over (exclud...

Finding Order and Direction from Chaos: A Comparison of Chaos Career Counseling and Trait Matching Counseling

ERIC Educational Resources Information Center

McKay, Hannah; Bright, Jim E. H.; Pryor, Robert G. L.

2005-01-01

Chaos career counseling, based on the Chaos Theory of Careers (R. G. L. Pryor & J. E. H. Bright, 2003a, 2003b), was compared with trait matching career counseling and a wait list control. Sixty university students who attended the Careers Research and Assessment Service seeking career advice were randomly assigned to the chaos intervention, the…

Comparing Hybrid Learning with Traditional Approaches on Learning the Microsoft Office Power Point 2003 Program in Tertiary Education

ERIC Educational Resources Information Center

Vernadakis, Nikolaos; Antoniou, Panagiotis; Giannousi, Maria; Zetou, Eleni; Kioumourtzoglou, Efthimis

2011-01-01

The purpose of this study was to determine the effectiveness of a hybrid learning approach to deliver a computer science course concerning the Microsoft office PowerPoint 2003 program in comparison to delivering the same course content in the form of traditional lectures. A hundred and seventy-two first year university students were randomly…

Tabulation of comet observations.

NASA Astrophysics Data System (ADS)

Concerning comets: 1962 VIII Humason, 1971 V Toba, 1975 XI Bradfield, 1979 X Bradfield, 1980 X P/Stephan-Oterma, 1980 XI P/Encke, 1980 XIII P/Tuttle, 1981 II Panther, 1982 VI Austin, 1982 VIII P/Churyumov-Gerasimenko, 1983 V Sugano-Saigusa-Fujikawa, 1983 VII IRAS-Araki-Alcock, 1983 XIII P/Kopff, 1984 III P/Hartley-IRAS, 1985 XIII P/Giacobini-Zinner, 1985 XVII Hartley-Good, 1985 XIX Thiele, 1986 III P/Halley, 1986h P/Schwassmann-Wachmann 2, 1986j P/Comas Solá, 1986k P/Kohoutek, 1986l Wilson, 1986m P/Grigg-Skjellerup, 1986n Sorrells, 1987h P/Howell, 1987l P/Reinmuth 2, 1987m P/Brooks 2, 1987n P/Harrington, 1987p P/Borrelly, 1987r P/Reinmuth 1, 1987s Bradfield, 1987u Rudenko, 1987y Levy, 1987z P/Shoemaker-Holt, 1987b1 McNaught, 1987d1 Ichimura, 1987f1 Furuyama, 1988a Liller, 1988b Shoemaker, 1988c Maury-Phinney, 1988e Levy, P/Schwassmann-Wachmann 1.

Characterization of Neisseria meningitidis Isolates from Recent Outbreaks in Ethiopia and Comparison with Those Recovered during the Epidemic of 1988 to 1989

PubMed Central

Norheim, Gunnstein; Rosenqvist, Einar; Aseffa, Abraham; Yassin, Mohammed Ahmed; Mengistu, Getahun; Kassu, Afework; Fikremariam, Dereje; Tamire, Wegene; Høiby, E. Arne; Alebel, Tsegaye; Berhanu, Degu; Merid, Yarid; Harboe, Morten; Caugant, Dominique A.

2006-01-01

The objectives of this study were to collect and characterize epidemic meningococcal isolates from Ethiopia from 2002 to 2003 and to compare them to 21 strains recovered during the previous large epidemic of 1988 to 1989. Ninety-five patients in all age groups with clinical signs of meningitis and a turbid cerebrospinal fluid (CSF) sample were included in the study of isolates from 2002 to 2003. Seventy-one patients (74.7%) were confirmed as having Neisseria meningitidis either by culture (n = 40) or by porA PCR (n = 31) of their CSF. The overall case fatality rate (CFR) was 11.6%; the N. meningitidis-specific CFR was 4.2%. All 40 strains were fully susceptible to all antibiotics tested except sulfonamide, were serotyped as A:4/21:P1.20,9, and belonged to sequence type 7 (ST-7). The strains from 1988 to 1989 were also equally susceptible and were characterized as A:4/21:P1.20,9, but they belonged to ST-5. Antigenic characterization of the strains revealed differences in the repertoire of lipooligosaccharides and Opa proteins between the old and the recent strains. PCR analysis of the nine lgt genes revealed the presence of the lgtAHFG genes in both old and recent strains; lgtB was present in only some of the strains, but no correlation with sequence type was observed. Further analysis showed that in addition to their pgm alleles, the Ethiopian ST-5 and ST-7 strains also differed in their tbpB, opa, fetA, and lgtA genes. The occurrence of new antigenic structures in strains sharing the same serogroup, PorA, and PorB may help explain the replacement of ST-5 by ST-7 in the African meningitis belt. PMID:16517868

Postaudit of optimal conjunctive use policies

USGS Publications Warehouse

Nishikawa, Tracy; Martin, Peter; ,

1998-01-01

A simulation-optimization model was developed for the optimal management of the city of Santa Barbara's water resources during a drought; however, this model addressed only groundwater flow and not the advective-dispersive, density-dependent transport of seawater. Zero-m freshwater head constraints at the coastal boundary were used as surrogates for the control of seawater intrusion. In this study, the strategies derived from the simulation-optimization model using two surface water supply scenarios are evaluated using a two-dimensional, density-dependent groundwater flow and transport model. Comparisons of simulated chloride mass fractions are made between maintaining the actual pumping policies of the 1987-91 drought and implementing the optimal pumping strategies for each scenario. The results indicate that using 0-m freshwater head constraints allowed no more seawater intrusion than under actual 1987-91 drought conditions and that the simulation-optimization model yields least-cost strategies that deliver more water than under actual drought conditions while controlling seawater intrusion.

Diabatic heating rate estimates from European Centre for Medium-Range Weather Forecasts analyses

NASA Technical Reports Server (NTRS)

Christy, John R.

1991-01-01

Vertically integrated diabatic heating rate estimates (H) calculated from 32 months of European Center for Medium-Range Weather Forecasts daily analyses (May 1985-December 1987) are determined as residuals of the thermodynamic equation in pressure coordinates. Values for global, hemispheric, zonal, and grid point H are given as they vary over the time period examined. The distribution of H is compared with previous results and with outgoing longwave radiation (OLR) measurements. The most significant negative correlations between H and OLR occur for (1) tropical and Northern-Hemisphere mid-latitude oceanic areas and (2) zonal and hemispheric mean values for periods less than 90 days. Largest positive correlations are seen in periods greater than 90 days for the Northern Hemispheric mean and continental areas of North Africa, North America, northern Asia, and Antarctica. The physical basis for these relationships is discussed. An interyear comparison between 1986 and 1987 reveals the ENSO signal.

Data analysis and archival

NASA Technical Reports Server (NTRS)

Danielsen, Edwin F.; Pfister, Leonhard; Hipskind, R. Stephen; Gaines, Steven E.

1990-01-01

The purpose of this task is the acquisition, distribution, archival, and analysis of data collected during and in support of the Upper Atmospheric Research Program (UARP) field experiments. Meteorological and U2 data from the 1984 Stratosphere-Troposphere Exchange Project (STEP) was analyzed to determine characteristics of internal atmospheric waves. CDROM's containing data from the 1987 STEP, 1987 Airborne Antarctic Ozone Expedition (AAOE), and the 1989 Airborne Arctic Stratospheric Expedition (AASE) were produced for archival and distribution of those data sets. The AASE CDROM contains preliminary data and a final release is planned for February 1990. Comparisons of data from the NASA ER-2 Meteorological Measurement System (MMS) with radar tracking and radiosonde data show good agreement. Planning for a Meteorological Support Facility continues. We are investigating existing and proposed hardware and software to receive, manipulate, and display satellite imagery and standard meteorological analyses, forecasts, and radiosonde data.

Full-Genome Sequencing as a Basis for Molecular Epidemiology Studies of Bluetongue Virus in India

PubMed Central

Maan, Sushila; Maan, Narender S.; Belaganahalli, Manjunatha N.; Rao, Pavuluri Panduranga; Singh, Karam Pal; Hemadri, Divakar; Putty, Kalyani; Kumar, Aman; Batra, Kanisht; Krishnajyothi, Yadlapati; Chandel, Bharat S.; Reddy, G. Hanmanth; Nomikou, Kyriaki; Reddy, Yella Narasimha; Attoui, Houssam; Hegde, Nagendra R.; Mertens, Peter P. C.

2015-01-01

Since 1998 there have been significant changes in the global distribution of bluetongue virus (BTV). Ten previously exotic BTV serotypes have been detected in Europe, causing severe disease outbreaks in naïve ruminant populations. Previously exotic BTV serotypes were also identified in the USA, Israel, Australia and India. BTV is transmitted by biting midges (Culicoides spp.) and changes in the distribution of vector species, climate change, increased international travel and trade are thought to have contributed to these events. Thirteen BTV serotypes have been isolated in India since first reports of the disease in the country during 1964. Efficient methods for preparation of viral dsRNA and cDNA synthesis, have facilitated full-genome sequencing of BTV strains from the region. These studies introduce a new approach for BTV characterization, based on full-genome sequencing and phylogenetic analyses, facilitating the identification of BTV serotype, topotype and reassortant strains. Phylogenetic analyses show that most of the equivalent genome-segments of Indian BTV strains are closely related, clustering within a major eastern BTV ‘topotype’. However, genome-segment 5 (Seg-5) encoding NS1, from multiple post 1982 Indian isolates, originated from a western BTV topotype. All ten genome-segments of BTV-2 isolates (IND2003/01, IND2003/02 and IND2003/03) are closely related (>99% identity) to a South African BTV-2 vaccine-strain (western topotype). Similarly BTV-10 isolates (IND2003/06; IND2005/04) show >99% identity in all genome segments, to the prototype BTV-10 (CA-8) strain from the USA. These data suggest repeated introductions of western BTV field and/or vaccine-strains into India, potentially linked to animal or vector-insect movements, or unauthorised use of ‘live’ South African or American BTV-vaccines in the country. The data presented will help improve nucleic acid based diagnostics for Indian serotypes/topotypes, as part of control strategies. PMID:26121128

The Characterization of the Phlebotomus papatasi Transcriptome

DTIC Science & Technology

2013-04-01

Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome . Bioinformatics. 2004; 20, no. 2:161–169. [PubMed: 14734306...discovery in organisms where sequencing the whole genome is not possible (Lindlof 2003), or in addition to genome information for more accurate gene...biology of these important vectors, and generate essential data for annotation of the newly sequenced phlebotomine sand fly genomes (McDowell et al

Incidence of invasive group B streptococcal disease and pathogen genotype distribution in newborn babies in the Netherlands over 25 years: a nationwide surveillance study.

PubMed

Bekker, Vincent; Bijlsma, Merijn W; van de Beek, Diederik; Kuijpers, Taco W; van der Ende, Arie

2014-11-01

Group B streptococcus is the most common cause of neonatal infections. We studied the clinical and molecular epidemiology of invasive group B streptococcus infection in children younger than 3 months in the Netherlands over 25 years. We assessed the effect of the Dutch guidelines, introduced in 1999, for prevention of group B streptococcus, consisting of intravenous antibiotic prophylaxis during labour in cases of premature labour, prolonged rupture of membranes, or fever during delivery. We did this nationwide surveillance study with data from 1987 to 2011, from the Netherlands Reference Laboratory for Bacterial Meningitis. We included data for patients aged 3 months or younger with positive blood culture or cerebrospinal fluid culture for group B streptococcus and Escherichia coli infection. Early onset was defined as less than 7 days after birth and late onset was defined as 7 or more days after birth. We did multilocus sequence typing of a random subset of group B streptococcus samples to assess changes in sequence type (Mann-Kendall trend test) and the distribution of clonal complexes (χ(2) and Fisher exact test) before the introduction of prevention guidelines (1987-99) and afterwards (2000-11). We compared incidences and the distribution of clonal complexes before and after the introduction of guidelines. Most cases of group B streptococcus had early onset (696/1075; 65%). The incidence of invasive group B streptococcus infection increased from 0·20 per 1000 livebirths in 1987, to 0·32 per 1000 livebirths in 2011 (p<0·0001). The incidence of early-onset disease increased from 0·11 per 1000 livebirths to 0·19 per 1000 livebirths (p<0·0001). The incidence of invasive Escherichia coli infection was 0·05 in 1987, and 0·16 in 2011 (p=0·17). Early-onset group B streptococcus infection caused by isolates belonging to clonal complex 17 was more common in the post-implementation period than in the pre-implementation period (p=0·002). The introduction of prevention guidelines for invasive group B streptococcus disease in 1999 did not reduce the incidence of disease in neonates. The guidelines should be reassessed and alternative approaches to prevent infant invasive group B streptococcus disease should be sought. National Institute of Public Health and the Environment, the European Union's seventh framework programme, Netherlands Organization for Health Research and Development, Academic Medical Center, and the European Research Council. Copyright © 2014 Elsevier Ltd. All rights reserved.

Algorithm, applications and evaluation for protein comparison by Ramanujan Fourier transform.

PubMed

Zhao, Jian; Wang, Jiasong; Hua, Wei; Ouyang, Pingkai

2015-12-01

The amino acid sequence of a protein determines its chemical properties, chain conformation and biological functions. Protein sequence comparison is of great importance to identify similarities of protein structures and infer their functions. Many properties of a protein correspond to the low-frequency signals within the sequence. Low frequency modes in protein sequences are linked to the secondary structures, membrane protein types, and sub-cellular localizations of the proteins. In this paper, we present Ramanujan Fourier transform (RFT) with a fast algorithm to analyze the low-frequency signals of protein sequences. The RFT method is applied to similarity analysis of protein sequences with the Resonant Recognition Model (RRM). The results show that the proposed fast RFT method on protein comparison is more efficient than commonly used discrete Fourier transform (DFT). RFT can detect common frequencies as significant feature for specific protein families, and the RFT spectrum heat-map of protein sequences demonstrates the information conservation in the sequence comparison. The proposed method offers a new tool for pattern recognition, feature extraction and structural analysis on protein sequences. Copyright © 2015 Elsevier Ltd. All rights reserved.

Seasonal climate variability in Medieval Europe (1000 to 1499)

NASA Astrophysics Data System (ADS)

Pfister, C.

2009-04-01

In his fundamental work on medieval climate Alexandre (1987) highlighted the significance of dealing with contemporary sources. Recently, long series of temperature indices for "summer" and "winter" were set up by Shabalova and van Engelen (2003) for the Low Countries, but the time resolution is not strictly seasonal. This paper worked out within the EU 6th Framework Project "Millennium" draws on critically reviewed documentary evidence from a spatially extensive area of Western and Central Europe (basically England, France, BENELUX, Western Germany, Switzerland, Austria, Poland, Hungary and todays Czech Republic. The narrative evidence is complemented with dendro-climatic series from the Alps (Büntgen et al. 2006). Each "climate observation" is georeferenced which allows producing spatial displays of the data for selected spaces and time-frames. The spatial distribution of the information charts can be used as a tool for the climatological verification of the underlying data. Reconstructions for winter (DJF) and summer (JJA) are presented in the form of time series and charts. Cold winters were frequent from 1205 to 1235 i.e. in the "Medieval Warm Period" and in the Little Ice Age (1306-1330; 1390-1470). Dry and warm summers prevailed in Western and Central Europe in the first half of the 13th century. During the Little Ice Age cold-wet summers (triggered by volcanic explosions in the tropics) were more frequent, though summer climate remained highly variable. Results are discussed with regard to the "Greenhouse Debate" and the relationship to glacier fluctuations in the Alps is explored. References -Alexandre, Pierre, 1987: Le Climat en Europe au Moyen Age. Contribution à l'histoire des variations climatiques de 1000 à 1425. Paris. -Büntgen, Ulf et al. 2006: Summer Temperature Variation in the European Alps, AD. 755-2004, J. of Climate 19 5606-5623. - Pfister, Christian et al. 1998: Winter air temperature variations in Central Europe during the Early and Highe Middle Ages. The Holocene 8/1: 547-564. -Rohr, Christian, 2007: Extreme Naturereignisse im Ostalpenraum, Köln. -Shabalova, Marina ; van Engelen, Aryan, 2003: Evaluation of Reconstruction of Winter and Summer Temperatures in the Low Countries, AD 764-1998, Clim. Change 58 1-2, 219-242.

Analysis of Effects of 2003 and Full-Allocation Withdrawals in Critical Area 1, East-Central New Jersey

USGS Publications Warehouse

Spitz, Frederick J.

2009-01-01

Critical Area 1 in east-central New Jersey was mandated in the early 1980s to address large drawdowns caused by increases in groundwater withdrawals. The aquifers involved include the Englishtown aquifer system, Wenonah-Mount Laurel aquifer, and the Upper and Middle Potomac-Raritan-Magothy aquifers. Groundwater levels recovered as a result of mandated cutbacks in withdrawals that began in the late 1980s. Subsequent increased demand for water has necessitated an analysis to determine the effects of full-allocation withdrawals, which supplements an optimization analysis done previously. A steady-state regional groundwater flow model is used to evaluate the effects of 2003 withdrawals and full-allocation withdrawals (7.3 million gallons per day greater than for 2003) on simulated water-levels. Simulation results indicate that the range of available withdrawals greater than full-allocation withdrawals is likely between 0 and 12 million gallons per day. The estimated range of available withdrawals is based on: (1) an examination of hydraulic-heads resulting from each of the two simulations, (2) an examination of differences in heads between these two simulations, (3) a comparison of simulated heads from each of the two simulations with the estimated location of salty groundwater, and (4) a comparison of simulated 2003 water levels to observed 2003 water levels. The results of the simulations also indicate that obtaining most of the available water would require varying the distribution of withdrawals and (or) relaxing the mandated hydrologic constraints used to protect the water supply.

International Medical Graduates in Radiation Oncology: Historical Trends and Comparison With Other Medical Specialties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Verma, Vivek, E-mail: vivek333@gmail.com; Shah, Chirag; Lautenschlaeger, Tim

Purpose: This is the first National Resident Matching Program analysis evaluating historical patterns of international medical graduates (IMGs) in radiation oncology (RO) and providing comparison with American (MD) medical graduates (AMGs), osteopathic students (DOs), unfilled positions, and other specialties. Methods and Materials: National Resident Matching Program data for IMGs were available from 2003 to 2015, with limited data for other specialty matches. The following RO-specific figures were obtained per year: total positions available; total matched positions; number of unfilled positions; and number of IMG, AMG, and DO matches. In addition, the number of IMG matches and total matched positions weremore » obtained for 19 other specialties. Fisher exact tests and χ{sup 2} tests were considered significant at α <.05. Results: From 2010 to 2015, 0.8% of RO matches were IMGs, a decline from 2.4% in 2003 to 2009 (P=.006). Proportions of DO matches during these intervals increased by 40% (from 1.0% to 1.4%), significantly lower than IMGs for 2003 to 2009 (P=.03) but not 2010 to 2015 (P=.26). From 2003 to 2015, the percentage of IMG matches, at 1.5%, was significantly lower than the percentage of unfilled seats, at 3.5% (P<.001). In comparison with other specialties (2003-2015), RO had the fewest IMG matches (1.5%), followed by otolaryngology (1.9%) and orthopedics (2.2%); specialties with the highest IMG proportions were internal medicine (37.1%), family medicine (35.7%), and neurology (31.1%). Conclusions: Presently, IMGs represent <1% of RO matches, the lowest among major specialties. There are several speculative factors associated with this low proportion. There are significantly more unfilled positions than those filled by IMGs; programs at risk of not matching could weigh the advantages and disadvantages of interviewing IMGs.« less

Increased apomixis expression concurrent with genetic and epigenetic variation in a newly synthesized Eragrostis curvula polyploid

NASA Astrophysics Data System (ADS)

Zappacosta, Diego C.; Ochogavía, Ana C.; Rodrigo, Juan M.; Romero, José R.; Meier, Mauro S.; Garbus, Ingrid; Pessino, Silvina C.; Echenique, Viviana C.

2014-04-01

Eragrostis curvula includes biotypes reproducing through obligate and facultative apomixis or, rarely, full sexuality. We previously generated a ``tetraploid-dihaploid-tetraploid'' series of plants consisting of a tetraploid apomictic plant (T), a sexual dihaploid plant (D) and a tetraploid artificial colchiploid (C). Initially, plant C was nearly 100% sexual. However, its capacity to form non-reduced embryo sacs dramatically increased over a four year period (2003-2007) to reach levels of 85-90%. Here, we confirmed high rates of apomixis in plant C, and used AFLPs and MSAPs to characterize the genetic and epigenetic variation observed in this plant in 2007 as compared to 2003. Of the polymorphic sequences, some had no coding potential whereas others were homologous to retrotransposons and/or protein-coding-like sequences. Our results suggest that in this particular plant system increased apomixis expression is concurrent with genetic and epigenetic modifications, possibly involving transposable elements.

Moral and Ethical Decision Making: Literature Review

DTIC Science & Technology

2005-08-08

decision making. Functional magnetic resonance imaging ( fMRI ) studies suggest that people considering moral dilemmas that are deemed more “personal...for PTSD . They surveyed several studies (Card, 1987; Hendin & Haas, 1984; Schnurr, Friedman, & Rosenberg, 1993; all cited in Berg et al., 1994) and... Studies . BERG, G.E., WATSON, C.G., NUGENT, B., GEARHART, L. P., JUBA, M., & ANDERSON, D. (1994). A comparison of combat’s effects on PTSD scores in

Alternative Reproductive Technologies: Implications for Children and Families. Hearing before the Select Committee on Children, Youth, and Families. House of Representatives, One Hundredth Congress, First Session (May 21, 1987).

ERIC Educational Resources Information Center

Congress of the U.S., Washington, DC. House Select Committee on Children, Youth, and Families.

A hearing was held for the purpose of receiving testimony about alternative reproductive technologies and their implications for children, families, and society. Testimony provided: (1) a comparison of in vitro fertilization and gamete intrafallopian transfer, and trends in in vitro fertilization; (2) a summary of definitions, statistics, and the…

A Comparison of Intrathecal and Epidural Analgesia and Its Effect on Length of Labor

DTIC Science & Technology

1997-09-10

time of delivery (Chestnut, Vandewalker, Owen, Bates, & Choi, 1987 ). Epidural or intiathecal injection of opioids has the potential to provide selective...exists pertaining to this issue (Miller, DeVore, & Eisler , 1993). Selective opioid analgesia whether epidural or intrathecal has also resulted in...of contraction of the utems and the pressure generated by these contractions (Miller, DeVore, & Eisler , 1993). Progress of labor: Increasing

13C and 14N Solid State NMR Characterization of Aramid-Containing Nylon-6 Polymers Synthesized by In Situ Polymerization of Caprolactam with Benzoyl Caprolactam Derivatives.

DTIC Science & Technology

1987-12-01

261.3 show equivalent areas consistant with tiie alternating copolymer structure. Comparison with the model acetanilide (-241.5) indicates the...T.; Fujito, T.; Deguchi. 1\\.; Ando, 1. Macromolecules. 1987, 2?0, 2441. 4 TABLE I CP MNAS ,_’ii N-methyl benzamide -2-o3.3 -226. Acetanilide -241.9

The performance of a simple degree-day estimate of snow accumulation to an alpine watershed

Treesearch

R. A. Sommerfeld; R. C. Musselman; G. L. Wooldridge; M. A. Conrad

1991-01-01

We estimated the yearly snow accumulation to the Glacier Lakes Ecosystems Experiments Site (GLEES) for the winters of 1987-88, 1988-89, and 1989-90, using a simple degree-day model developed by J. Martinec and A. Rango. Comparisons with other data indicate that the estimates are accurate. In particular, a calibration with an intensive snow core-probe survey in 1989-90...

Number of Heat Wave Deaths by Diagnosis, Sex, Age Groups, and Area, in Slovenia, 2015 vs. 2003

PubMed Central

Perčič, Simona; Kukec, Andreja; Cegnar, Tanja; Hojs, Ana

2018-01-01

Background: Number of deaths increases during periods of elevated heat. Objectives: To examine whether differences in heat-related deaths between 2003 and 2015 occurred in Slovenia. Materials and Methods: We estimated relative risks for deaths for the observed diagnoses, sex, age, and area, as well as 95% confidence intervals and excess deaths associated with heat waves occurring in 2015 and 2003. For comparison between 2015 and 2003, we calculated relative risks ratio and 95% confidence intervals. Results: Statistically significant in 2015 were the following: age group 75+, all causes of deaths (RR = 1.10, 95% CI 1.00–1.22); all population, circulatory system diseases (RR = 1.14, 95% CI 1.01–1.30) and age group 75+, diseases of circulatory system (RR = 1.17, 95% CI 1.01–1.34). Statistically significant in 2003 were the following: female, age group 5–74, circulatory system diseases (RR = 1.69, 95% CI 1.08–2.62). Discussion: Comparison between 2015 and 2003, all, circulatory system diseases (RRR = 1.25, 95% CI 1.01–1.55); male, circulatory system diseases (RRR = 1.85, 95% CI 1.41–2.43); all, age group 75+ circulatory system diseases (RRR = 1.34, 95% CI 1.07–1.69); male, age group 75+, circulatory system diseases (RRR = 1.52, 95% CI 1.03–2.25) and female, age group 75+, circulatory system diseases (RRR = 1.43, 95% CI 1.08–1.89). Conclusions: Public health efforts are urgent and should address circulatory system causes and old age groups. PMID:29361792

Roosters, Robins, and Alarm Clocks: Aptness and Conventionality in Metaphor Comprehension

ERIC Educational Resources Information Center

Jones, Lara L.; Estes, Zachary

2006-01-01

Bowdle and Gentner (2005) proposed a reconciliation of the comparison and categorization models of metaphor comprehension. Their career of metaphor model posits that, as a metaphorical term becomes more conventional, its mode of processing shifts from comparison to categorization. However, other recent studies (Chiappe, Kennedy, & Chiappe, 2003;…

3'-terminal sequence of a small round structured virus (SRSV) in Japan.

PubMed

Utagawa, E T; Takeda, N; Inouye, S; Kasuga, K; Yamazaki, S

1994-01-01

We determined the nucleotide sequence of about 1,000 bases from the 3'-terminus of a small round structured virus (SRSV), which caused a gastroenteritis outbreak in Chiba Prefecture, Japan, in 1987. The sequence was compared with the corresponding sequence region of Norwalk virus; it consisted of a part of the open reading frame 2 (ORF2), whole ORF3, and 3'-noncoding region (NCR). The 624-base-long ORF3 had sequence homology of 68% with the corresponding region of Norwalk virus. (The amino acid sequence homology was 74%.) The 94-base-long NCR had 65% homology with Norwalk virus. We then selected two consensus-sequence portions in the above sequence between Chiba and Norwalk viruses for primers in the reverse transcriptase-polymerase chain reaction (RT-PCR). Using this primer set, we detected 669-bp bands in agarose gel electrophoresis of RT-PCR products from feces containing Chiba or Norwalk viruses. Furthermore, in Southern hybridization with Chiba probes which were labeled with digoxigenin-dUTP in PCR, the bands of the two viruses were clearly stained under a low stringency condition. Since both Chiba and Norwalk viruses were detected by the above primer set although they are geographically and chronologically different viruses, our primer-pair may be useful for detection of a broad range of SRSVs which cause gastroenteritis in different areas.

The Importance of Metadata in System Development and IKM

DTIC Science & Technology

2003-02-01

Defence R& D Canada The Importance of Metadata in System Development and IKM Anthony W. Isenor Technical Memorandum DRDC Atlantic TM 2003-011...Metadata in System Development and IKM Anthony W. Isenor Defence R& D Canada – Atlantic Technical Memorandum DRDC Atlantic TM 2003-011 February... it is important for searches and providing relevant information to the client. A comparison of metadata standards was conducted with emphasis on

Interaction of recombinant human epidermal growth factor with phospholipid vesicles. A steady-state and time-resolved fluorescence study of the bis-tryptophan sequence (Trp49-Trp50).

PubMed

Li De La Sierra, I M; Vincent, M; Padron, G; Gallay, J

1992-01-01

The interaction of recombinant human epidermal growth factor with small unilamellar phospholipid vesicles was studied by steady-state and time-resolved fluorescence of the bis-tryptophan sequence (Trp49-Trp50). Steady-state anisotropy measurements demonstrate that strong binding occurred with small unilamellar vesicles made up of acidic phospholipids at acidic pH only (pH < or = 4.7). An apparent stoichiometry for 1,2-dimyristoyl-sn-phosphoglycerol of about 12 phospholipid molecules per molecule of human epidermal growth factor was estimated. The binding appears to be more efficient at temperatures above the gel to liquid-crystalline phase transition. The conformation and the environment of the Trp-Trp sequence are not greatly modified after binding, as judged from the invariance of the excited state lifetime distribution and from that of the fast processes affecting the anisotropy decay. This suggests that the Trp-Trp sequence is not embedded within the bilayer, in contrast to the situation in surfactant micelles (Mayo et al. 1987; Kohda and Inigaki 1992).

Dental caries experience in young Australian Army recruits 2008.

PubMed

Hopcraft, M S; Yapp, K E; Mahoney, G; Morgan, M V

2009-12-01

Recent studies have shown a substantial decline in caries experience in Australian Army recruits between 1996 and 2002-2003, and in Australian adults between 1987-1988 and 2004-2006. However, studies in children have reported an increasing trend in caries experience between 1998 and 2002. The aim of this study was to investigate caries experience in Australian Army recruits in 2008. A cross-sectional study involving 1084 Australian Army recruits was conducted from January to May 2008. Data were obtained from a clinical dental examination with bitewing radiographs, and a questionnaire elicited socio-demographic data and history on lifetime exposure to fluoridated drinking water. Mean DMFT scores were 3.16, 4.08, 5.16 and 7.11 for recruits aged 17-20, 21-25, 26-30 and 31-35 years, respectively. Recruits with a lifetime exposure to fluoridated drinking water had a mean DMFT of 3.02, while recruits with no exposure had a mean DMFT of 3.87. Caries experience in Australian Army recruits aged 17-25 years increased between 2002-2003 and 2008. Recruits with lifetime exposure to fluoridated drinking water had 25 per cent less caries experience compared with recruits who had no exposure to fluoridated drinking water after adjusting for the effects of age, gender, education and socio-economic status.

Land cover changes assessment using object-based image analysis in the Binah River watershed (Togo and Benin)

NASA Astrophysics Data System (ADS)

Badjana, Hèou Maléki; Helmschrot, Jörg; Selsam, Peter; Wala, Kpérkouma; Flügel, Wolfgang-Albert; Afouda, Abel; Akpagana, Koffi

2015-10-01

In this study, land cover changes between 1972 and 2013 were investigated in the Binah River watershed (North of Togo and Benin) using remote sensing and geographic information system technologies. Multitemporal satellite images—Landsat MSS (1972), TM (1987), and OLI-TIRS (2013)—were processed using object-based image analysis and post-classification comparison methods including landscape metrics and changes trajectories analysis. Land cover maps referring to five main land cover classes, namely, agricultural land, forest land, savannah, settlements, and water bodies, were produced for each acquisition date. The overall accuracies were 76.64% (1972), 83.52% (1987), and 88.84% (2013) with respective Kappa statistics of 0.69, 0.78, and 0.86. The assessment of the spatiotemporal pattern of land cover changes indicates that savannah, the main vegetation type, has undergone the most dominant change, decreasing from 67% of the basin area in 1972 to 56% in 1987 and 33% in 2013. At the same time, agricultural land has significantly increased from 15% in 1972 to 24% in 1987 and 43% in 2013, while some proportions of agricultural land were converted to savannah relating to fallow agriculture. In total, more than 55% of the landscape experienced changes between 1972 and 2013. These changes are primarily due to human activities and population growth. In addition, agricultural activities significantly contributed to the increase in the number of patches, degree of division, and splitting index of forest and savannah vegetations and the decrease in their effective mesh sizes. These results indicate further fragmentation of forest and savannah vegetations between 1972 and 2013. Further research is needed to quantitatively evaluate the influences of individual factors of human activities and to separate these from the impacts of climate change-driven disturbances.

Synchronous response of sedimentary organic carbon accumulation on the inner shelf of the East China Sea to the water impoundment of Three Gorges and Gezhouba Dams

NASA Astrophysics Data System (ADS)

Lin, Jia; Zhu, Qing; Hong, Yuehui; Yuan, Lirong; Liu, Jinzhong; Xu, Xiaoming; Wang, Jianghai

2018-01-01

Coastal seas, located between continents and the open ocean, are an important active carbon pool. The sedimentary total organic carbon (TOC) in these areas is a mixture of terrestrial and marine sources, and can be a powerful proxy for tracing natural processes and human activities. In this study, one fine-grained sediment core (DH5-1) from the inner shelf of the East China Sea was systematically analyzed for TOC and black carbon (BC) contents and TOC stable carbon isotope ratios (δ13C). By combining these data with 210Pb dating, an improved carbon correction model and a two end-member mixing model, we reconstructed century-scale high-resolution sequences of corrected TOC, terrestrial TOC and marine TOC contents and identified two carbon depletion events in the DH5-1 record. The two events, shown as two minima in the TOC profiles, correspond temporally to 1985-1987 AD and 2003-2006 AD, which exactly matches the water impoundment of the Gezhouba Dam and Three Gorges Dam, respectively. In addition, the variations in TOC contents and δ13C values before, during or after the minima demonstrate a relationship between the depletion events and water impoundment of the dams on the Changjiang River. The TOC reductions may represent synchronous responses of sedimentary TOC and resultant ecological effects on the inner shelf of the East China Sea to the water impoundment of the dams. These new TOC records reflect the interaction between natural and anthropogenic processes and, accordingly, provide a deep insight and important references for assessing marine ecological effects resulting from water impoundment of largescale dams.

Molecular phylogeny of the Haplosplanchnata Olson, Cribb, Tkach, Bray and Littlewood, 2003, with a description of Schikhobalotrema huffmani n. sp.

PubMed

Huston, Daniel C; Cutmore, Scott C; Cribb, Thomas H

2017-09-26

We describe Schikhobalotrema huffmani n. sp. from Tylosurus crocodilus (Péron and Leseur) (Belonidae) collected off Lizard Island, Great Barrier Reef, Queensland, Australia and Tylosurus gavialoides (Castelnau) collected from Moreton Bay, Queensland. Schikhobalotrema huffmani n. sp., along with Schikhobalotrema ablennis (Abdul-Salam and Khalil, 1987) Madhavi, 2005, Schikhobalotrema acutum (Linton, 1910) Skrjabin and Guschanskaja, 1955 and Schikhobalotrema adacutum (Manter, 1937) Skrjabin and Guschanskaja, 1955 are distinguished from all other species of Schikhobalotrema Skrjabin and Guschanskaja, 1955 in having ventral suckers which bear lateral lobes and have longitudinal apertures. Schikhobalotrema huffmani n. sp. differs from S. ablennis in having an obvious post-vitelline region and a longer forebody. From S. acutum, S. huffmani n. sp. differs in having a prostatic bulb smaller than the pharynx and more anterior testis. From S. adacutum, S. huffmani n. sp. differs in having more prominent ventral sucker lobes, a conspicuous prostatic bulb and a longer forebody. We also report the first Australian record of Haplosplanchnus pachysomus (Eysenhardt, 1829) Looss, 1902, from Mugil cephalus Linnaeus (Mugilidae) collected in Moreton Bay. Molecular sequence data (ITS2, 18S and 28S rDNA) were generated for Schikhobalotrema huffmani n. sp., H. pachysomus and archived specimens of Hymenocotta mulli Manter, 1961. The new 18S and 28S molecular data were combined with published data of five other haplosplanchnid taxa to expand the phylogeny for the Haplosplanchnata. Bayesian inference and Maximum Likelihood analyses recovered identical tree topology and demonstrated the Haplosplanchnata as a well-supported monophyletic group. However, relationships at and below the subfamily level remain poorly resolved.

Mutations Affecting Expression of the rosy Locus in Drosophila melanogaster

PubMed Central

Lee, Chong Sung; Curtis, Daniel; McCarron, Margaret; Love, Carol; Gray, Mark; Bender, Welcome; Chovnick, Arthur

1987-01-01

The rosy locus in Drosophila melanogaster codes for the enzyme xanthine dehydrogenase (XDH). Previous studies defined a "control element" near the 5' end of the gene, where variant sites affected the amount of rosy mRNA and protein produced. We have determined the DNA sequence of this region from both genomic and cDNA clones, and from the ry+10 underproducer strain. This variant strain had many sequence differences, so that the site of the regulatory change could not be fixed. A mutagenesis was also undertaken to isolate new regulatory mutations. We induced 376 new mutations with 1-ethyl-1-nitrosourea (ENU) and screened them to isolate those that reduced the amount of XDH protein produced, but did not change the properties of the enzyme. Genetic mapping was used to find mutations located near the 5' end of the gene. DNA from each of seven mutants was cloned and sequenced through the 5' region. Mutant base changes were identified in all seven; they appear to affect splicing and translation of the rosy mRNA. In a related study (T. P. Keith et al. 1987), the genomic and cDNA sequences are extended through the 3' end of the gene; the combined sequences define the processing pattern of the rosy transcript and predict the amino acid sequence of XDH. PMID:3036645

Molecular Epidemiology of Norovirus Outbreaks in Norway during 2000 to 2005 and Comparison of Four Norovirus Real-Time Reverse Transcriptase PCR Assays

PubMed Central

Vainio, Kirsti; Myrmel, Mette

2006-01-01

During the period from January 2000 to August 2005 a total of 204 outbreaks of norovirus gastroenteritis were diagnosed at the Norwegian Institute of Public Health. A clear increase in the norovirus activity was seen in healthcare institutions during the winter seasons. Polymerase sequence analysis of norovirus strains from 122 outbreaks showed that 112 were caused by GII strains (91.8%). Two norovirus variants seen during the study period—GIIb and GII.4—were predominant between January 2000 and September 2002, whereas GII.4 was predominant from September 2002 onward. The highest norovirus activity was seen during the 2002-2003 and 2004-2005 seasons with the emergence of new GII.4 variants. This study describes the molecular epidemiology of norovirus strains circulating in Norway during the five previous seasons and compares four norovirus real-time reverse transcriptase PCR assays. A suitable assay for routine diagnostics is suggested. PMID:17021099

Conservative secondary structure motifs already present in early-stage folding (in silico) as found in serpines family.

PubMed

Brylinski, Michal; Konieczny, Leszek; Kononowicz, Andrzej; Roterman, Irena

2008-03-21

The well-known procedure implemented in ClustalW oriented on the sequence comparison was applied to structure comparison. The consensus sequence as well as consensus structure has been defined for proteins belonging to serpine family. The structure of early stage intermediate was the object for similarity search. The high values of W(sequence) appeared to be accordant with high values of W(structure) making possible structure comparison using common criteria for sequence and structure comparison. Since the early stage structural form has been created according to limited conformational sub-space which does not include the beta-structure (this structure is mediated by C7eq structural form), is particularly important to see, that the C7eq structural form may be treated as the seed for beta-structure present in the final native structure of protein. The applicability of ClustalW procedure to structure comparison makes these two comparisons unified.

NASA's SR-71B and F-18 HARV aircraft left Edwards Air Force Base, Calif., on March 24, 2003

NASA Image and Video Library

2003-03-24

Dryden Flight Research Center's SR-71B Blackbird aircraft, NASA tail number 831, is destined for the Kalamazoo Air Zoo museum in Kalamazoo, Mich., and the F-18 High Angle-of-Attack Research Vehicle (HARV) aircraft, NASA tail number 840, is going to the Virginia Air and Space Center in Hampton, Va. NASA's SR-71B was one of only two SR-71 trainer aircraft built, and served NASA in that role, as well as for some high-speed research, from 1991 to 1999. The F-18 HARV provided some of the most comprehensive data on the high-angle-of-attack flight regime, flying at angles of up to 70 degrees from the horizontal. The HARV flew 385 research flights at Dryden from 1987 through 1996.

Comparison of preconstruction and 2003 bathymetric and topographic survey of Lake McConaughy, Nebraska

USGS Publications Warehouse

Kress, Wade H.; Sebree, Sonja K.; Littin, Gregory R.; Drain, Michael A.; Kling, Michael E.

2005-01-01

The U.S. Geological Survey, in cooperation with The Central Nebraska Public Power and Irrigation District, conducted a study that used bathymetric and topographic surveying in conjunction with Geographical Information Systems techniques to determine the 2003 physical shape, current storage capacity, and the changes in storage capacity of Lake McConaughy that have occurred over the past 62 years. By combining the bathymetric and topographic survey data, the current surface area of Lake McConaughy was determined to be 30,413.0 acres, with a volume of 1,756,300 acre-feet at the lake conservation-pool elevation of 3,266.4 feet above North American Vertical Datum of 1988 (3,265.0 feet above Central datum). To determine the changes in storage of Lake McConaughy, the 2003 survey Digital Elevation Model (DEM) was compared to a preconstruction DEM compiled from historical contour maps. This comparison showed an increase in elevation at the dam site due to the installation of Kingsley Dam. Immediately to the west of the Kingsley Dam is an area of decline where a borrow pit for Kingsley Dam was excavated. The comparison of the preconstruction survey to the 2003 survey also was used to estimate the gross storage capacity reduction that occurred between 1941 and 2002. The results of this comparison indicate a gross storage capacity reduction of approximately 42,372 acre-feet, at the lake conservation-pool elevation of 3,266.4 feet in NAVD 88 (3,265.0 feet in Central datum). By comparing preconstruction and 2003 survey data and subtracting the Kingsley Dam and borrow pit, the total estimated net volume of sediment deposited over the past 62 years is 53,347,124 cubic yards, at an annual average rate of 860,437 cubic yards per year. The approximate decrease in the net storage capacity occurring over the past 62 years is 33,066 acre-feet, at an annual average decrease of approximately 533 acre-feet per year, which has resulted in a 1.8 percent decrease in storage capacity of Lake McConaughy. The lake has accumulated most of the sediment in the original river channel and in the west end of the delta area on the upstream end of the lake.

A Gauge-generalized Solution for Non-Keplerian Motion in the Frenet-Serret Frame

NASA Astrophysics Data System (ADS)

Garber, Darren D.

2009-05-01

The customary modeling of perturbed planetary and spacecraft motion as a continuous sequence of unperturbed two-body orbits (instantaneous ellipses) is conveniently assigned a physical interpretation through the Keplerian and Delaunay elements and complemented mathematically by the Lagrange-type equations which describe the evolution of these variables. If however the actual motion is very non-Keplerian (i.e. the perturbed orbit varies greatly from a two-body orbit), then its modeling by a sequence of conics is not necessarily optimal in terms of its mathematical description and its resulting physical interpretation. Since, in principle a curve of any type can be represented as a sequence of points from a family of curves of any other type (Efroimsky 2005), alternate non-conic curves can be utilized to better describe the perturbed non-Keplerian motion of the body both mathematically and with a physically relevant interpretation. Non-Keplerian motion exists in both celestial mechanics and astrodynamics as evident by the complex interactions within star clusters and also as the result of a spacecraft accelerating via ion propulsion, solar sails and electro-dynamic tethers. For these cases, the sequence of simple orbits to describe the motion is not based on conics, but instead a family of spirals. The selection of spirals as the underlying simple motion is supported by the fact that it is unnecessary to describe the motion in terms of instantaneous orbits tangent to the actual trajectory (Efroimsky 2002, Newman & Efroimsky 2003) and at times there is an advantage to deviate from osculation, in order to greatly simplify the resulting mathematics via gauge freedom (Efroimsky & Goldreich 2003, Slabinski 2003, Gurfil 2004). From these two principles, (1) spirals as instantaneous orbits, and (2) controlled deviation from osculation, new planetary equations are derived for new non-osculating elements in the Frenet-Serret frame with the gauge function as a measure of non-osculation.

Aligning the Structural Components across Learning Tasks of Case Comparisons

ERIC Educational Resources Information Center

Alfieri, Louis; Nokes, Timothy J.; Schunn, Christian D.

2011-01-01

Analogous thinking has been commonly discussed as being an inherent and distinguishing characteristic of human cognition (e.g., Gentner, 2010; Goldstone, Day, & Son, 2010; Holyoak, in press; Rittle-Johnson & Star, in press). Gentner (2003) has argued that as part of the human cognitive toolbox, comparison accompanied by the relational language to…

Student and School Factors Affecting Mathematics Achievement: International Comparisons between Korea, Japan and the USA

ERIC Educational Resources Information Center

Shin, Jongho; Lee, Hyunjoo; Kim, Yongnam

2009-01-01

The purpose of the study was to comparatively investigate student- and school-level factors affecting mathematics achievement of Korean, Japanese and American students. For international comparisons, the PISA 2003 data were analysed by using the Hierarchical Linear Modeling method. The variables of competitive-learning preference, instrumental…

Definition and Analysis of a System for the Automated Comparison of Curriculum Sequencing Algorithms in Adaptive Distance Learning

ERIC Educational Resources Information Center

Limongelli, Carla; Sciarrone, Filippo; Temperini, Marco; Vaste, Giulia

2011-01-01

LS-Lab provides automatic support to comparison/evaluation of the Learning Object Sequences produced by different Curriculum Sequencing Algorithms. Through this framework a teacher can verify the correspondence between the behaviour of different sequencing algorithms and her pedagogical preferences. In fact the teacher can compare algorithms…

Finding functional features in Saccharomyces genomes by phylogenetic footprinting.

PubMed

Cliften, Paul; Sudarsanam, Priya; Desikan, Ashwin; Fulton, Lucinda; Fulton, Bob; Majors, John; Waterston, Robert; Cohen, Barak A; Johnston, Mark

2003-07-04

The sifting and winnowing of DNA sequence that occur during evolution cause nonfunctional sequences to diverge, leaving phylogenetic footprints of functional sequence elements in comparisons of genome sequences. We searched for such footprints among the genome sequences of six Saccharomyces species and identified potentially functional sequences. Comparison of these sequences allowed us to revise the catalog of yeast genes and identify sequence motifs that may be targets of transcriptional regulatory proteins. Some of these conserved sequence motifs reside upstream of genes with similar functional annotations or similar expression patterns or those bound by the same transcription factor and are thus good candidates for functional regulatory sequences.

Genetic and transcriptional organization of the clpC locus in Bifidobacterium breve UCC 2003.

PubMed

Ventura, Marco; Fitzgerald, Gerald F; van Sinderen, Douwe

2005-10-01

A homolog of the clpC ATPase gene was identified in the genome of Bifidobacterium breve UCC 2003. Since this gene is very well conserved among eubacteria, we employed a PCR-based approach using primers based on highly conserved regions of ClpC proteins in order to identify homologous genes in other bifidobacterial species. Analysis by slot blot, Northern blot, and primer extension experiments showed that transcription of clpC is induced in response to moderate heat shock regimes. Moreover, we identified in the genome sequence of B. breve UCC 2003 a gene, designated clgR, which is predicted to encode a transcriptional regulator involved in regulation of the bifidobacterial clpC gene. The role of this protein in the regulation of B. breve UCC 2003 clpC gene expression was investigated by performing gel retardation experiments. We show that a biologically active ClgR molecule requires one or more proteinaceous coactivators to assist in the specific binding of ClgR to the clpC promoter region.

Genetic and Transcriptional Organization of the clpC Locus in Bifidobacterium breve UCC 2003

PubMed Central

Ventura, Marco; Fitzgerald, Gerald F.; van Sinderen, Douwe

2005-01-01

A homolog of the clpC ATPase gene was identified in the genome of Bifidobacterium breve UCC 2003. Since this gene is very well conserved among eubacteria, we employed a PCR-based approach using primers based on highly conserved regions of ClpC proteins in order to identify homologous genes in other bifidobacterial species. Analysis by slot blot, Northern blot, and primer extension experiments showed that transcription of clpC is induced in response to moderate heat shock regimes. Moreover, we identified in the genome sequence of B. breve UCC 2003 a gene, designated clgR, which is predicted to encode a transcriptional regulator involved in regulation of the bifidobacterial clpC gene. The role of this protein in the regulation of B. breve UCC 2003 clpC gene expression was investigated by performing gel retardation experiments. We show that a biologically active ClgR molecule requires one or more proteinaceous coactivators to assist in the specific binding of ClgR to the clpC promoter region. PMID:16204550

Prime Contract Awards by State, Fiscal Year 1988

DTIC Science & Technology

1988-01-01

information on Department of Defense procurement actions. Data are broken down into three categories: 1) Total U.S. Actions, 2) Actions Not Distributed...and civil functions (i.e., US. Army Corps of Engineers--Civil Works) procurements are represented- The data are presented by state and include the...also provide, for comparison purposes, data for the fourth quarters of FY 1988 and FY 1987. The total net value of military procurement actions for

Bioaccumulation Potential of Contaminants from Bedded and Suspended Oakland Harbor Deepening Project Sediments to San Francisco Bay Flatfish and Bivalve Mollusks

DTIC Science & Technology

1994-08-01

Descriptive Statistics of Sediment Conventional Parameters and Statistical Comparisons of Oil and Grease and Total Petroleum Hydrocarbon Concentrations in...7000 Series, USEPA 1986, Bloom and Crecelius 1987). Oil and grease, total petroleum hydrocarbons . BPNL. Oil and grease were determined accord- ing to...infrared spectrometer. Total petroleum hydrocarbons were determined according to Method 418.1 (USEPA 1983). Sediment samples were extracted with freon

Strain variation, based on the hemagglutinin gene, in Norwegian ISA virus isolates collected from 1987 to 2001: indications of recombination.

PubMed

Devold, M; Falk, K; Dale, B; Krossøy, B; Biering, E; Aspehaug, V; Nilsen, F; Nylund, A

2001-11-08

Infectious salmon anemia (ISA) is caused by a virus that probably belongs to the Orthomyxoviridae and was first recorded in Norway in 1984. The disease has since spread along the Norwegian coast and has later been found in Canada, Scotland, the Faroe Islands, Chile, and the USA. This study presents sequence variation of the hemagglutinin gene from 37 ISA virus isolates, viz. one isolate from Scotland, one from Canada and 35 from Norway. The hemagglutinin gene contains a highly polymorphic region (HPR), which together with the rest of the gene sequence provides a good tool for studies of epizootics. The gene shows temporal and geographical sequence variation, where certain areas are dominated by distinct groups of isolates. Evidence of transmission of ISA virus isolates within and between regions is given. It is suggested that the hemagglutinin gene from different isolates may recombine. Possible recombination sites are found within the HPR and in the 5'-end flanking region close to the HPR.

VRX-496(VIRxSYS).

PubMed

Morris, Kevin V

2005-02-01

VIRxSYS is developing VRX-496, a lentiviral HIV-based vector encoding anti-HIV antisense envelope sequences, as a potential gene therapy for HIV infection. In July 2003, VIRxSYS undertook the initial dosing of an HIV-positive patient in a phase I/IIa trial.

Seismic sequence stratigraphy of Miocene deposits related to eustatic, tectonic and climatic events, Cap Bon Peninsula, northeastern Tunisia

NASA Astrophysics Data System (ADS)

Gharsalli, Ramzi; Zouaghi, Taher; Soussi, Mohamed; Chebbi, Riadh; Khomsi, Sami; Bédir, Mourad

2013-09-01

The Cap Bon Peninsula, belonging to northeastern Tunisia, is located in the Maghrebian Alpine foreland and in the North of the Pelagian block. By its paleoposition, during the Cenozoic, in the edge of the southern Tethyan margin, this peninsula constitutes a geological entity that fossilized the eustatic, tectonic and climatic interactions. Surface and subsurface study carried out in the Cap Bon onshore area and surrounding offshore of Hammamet interests the Miocene deposits from the Langhian-to-Messinian interval time. Related to the basin and the platform positions, sequence and seismic stratigraphy studies have been conducted to identify seven third-order seismic sequences in subsurface (SM1-SM7), six depositional sequences on the Zinnia-1 petroleum well (SDM1-SDM6), and five depositional sequences on the El Oudiane section of the Jebel Abderrahmane (SDM1-SDM5). Each sequence shows a succession of high-frequency systems tract and parasequences. These sequences are separated by remarkable sequence boundaries and maximum flooding surfaces (SB and MFS) that have been correlated to the eustatic cycles and supercycles of the Global Sea Level Chart of Haq et al. (1987). The sequences have been also correlated with Sequence Chronostratigraphic Chart of Hardenbol et al. (1998), related to European basins, allows us to arise some major differences in number and in size. The major discontinuities, which limit the sequences resulted from the interplay between tectonic and climatic phenomena. It thus appears very judicious to bring back these chronological surfaces to eustatic and/or local tectonic activity and global eustatic and climatic controls.

The influence of national policy change on subnational policymaking: Medicaid nursing facility reimbursement in the American states.

PubMed

Miller, Edward Alan; Wang, Lili

2009-06-01

This study proposes that exogenous shocks emanating from national governments can significantly change health policy processes among subnational units. The relevance of this insight for comparative health policy research is examined in the context of Medicaid nursing facility reimbursement policymaking in the American states. Event history techniques are used to model state adoption of case-mix methods for reimbursing nursing homes under Medicaid from 1980 to 2004. Case-mix adjusts Medicaid nursing home payments for patient acuity, thereby enabling states to pay more for residents with higher care needs and to pay less for residents with lower care needs. The goal is to improve access for more resource intensive Medicaid beneficiaries and to distribute payments more equitably across the providers who serve them. The most noteworthy national policy changes affecting case-mix implementation by state governments were adoption of nursing home quality reform with the Omnibus Budget Reconciliation Act (OBRA) of 1987 and case-mix by Medicare with the Balanced Budget Act (BBA) of 1997. In light of the 1990 and 1999 implementation of OBRA 1987 and the BBA, respectively, five models were estimated, which in addition to covering the entire time period studied (1980-2004) include pre-/post-BBA comparisons (1980-1998, 1999-2004) and pre-/post-OBRA 1987 comparisons (1980-1989, 1990-1998). Results suggest that in contrast to early adoption, which tended to be grounded in the capabilities of innovative states, later adoption tended to take place among less capable states influenced more by the changing federal policy environment. They also highlight the salience of programmatic and fiscal conditions but during the middle of the adoption cycle only. Future research should clarify the ways in which national policy changes influence health policy adoption at the subnational level, both in other nations and across different levels of government.

Combined sequence and structure analysis of the fungal laccase family.

PubMed

Kumar, S V Suresh; Phale, Prashant S; Durani, S; Wangikar, Pramod P

2003-08-20

Plant and fungal laccases belong to the family of multi-copper oxidases and show much broader substrate specificity than other members of the family. Laccases have consequently been of interest for potential industrial applications. We have analyzed the essential sequence features of fungal laccases based on multiple sequence alignments of more than 100 laccases. This has resulted in identification of a set of four ungapped sequence regions, L1-L4, as the overall signature sequences that can be used to identify the laccases, distinguishing them within the broader class of multi-copper oxidases. The 12 amino acid residues in the enzymes serving as the copper ligands are housed within these four identified conserved regions, of which L2 and L4 conform to the earlier reported copper signature sequences of multi-copper oxidases while L1 and L3 are distinctive to the laccases. The mapping of regions L1-L4 on to the three-dimensional structure of the Coprinus cinerius laccase indicates that many of the non-copper-ligating residues of the conserved regions could be critical in maintaining a specific, more or less C-2 symmetric, protein conformational motif characterizing the active site apparatus of the enzymes. The observed intraprotein homologies between L1 and L3 and between L2 and L4 at both the structure and the sequence levels suggest that the quasi C-2 symmetric active site conformational motif may have arisen from a structural duplication event that neither the sequence homology analysis nor the structure homology analysis alone would have unraveled. Although the sequence and structure homology is not detectable in the rest of the protein, the relative orientation of region L1 with L2 is similar to that of L3 with L4. The structure duplication of first-shell and second-shell residues has become cryptic because the intraprotein sequence homology noticeable for a given laccase becomes significant only after comparing the conservation pattern in several fungal laccases. The identified motifs, L1-L4, can be useful in searching the newly sequenced genomes for putative laccase enzymes. Copyright 2003 Wiley Periodicals, Inc. Biotechnol Bioeng 83: 386-394, 2003.

Genomics of Staphylococcus

NASA Astrophysics Data System (ADS)

Lindsay, Jodi A.

The staphylococci are Gram-positive cocci that divide to form clusters that look like grapes. By 16S ribosomal sequencing, they are most closely related to the Gram-positive, low G+C content Bacillus-Lactobacillus-Staphylococcus genera (Woese, 1987). There are over 30 species of staphylococci identified, and they are typically found on the skin and mucous membranes of mammals. About a dozen species are frequently carried on humans, including Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus haemolyticus, Staphylococcus capitis, Staphylococcus hominis, Staphylococcus cohnii, Staphylococcus lugdunensis, Staphylococcus schleiferi, Staphylococcus saprophyticus, Staphylococcus simulans, Staphylococcus warneri and Staphylococcus xylosus.

Molecular typing of Legionella pneumophila serogroup 1 clinical strains isolated in Italy.

PubMed

Fontana, Stefano; Scaturro, Maria; Rota, Maria Cristina; Caporali, Maria Grazia; Ricci, Maria Luisa

2014-07-01

Molecular typing methods for discriminating different bacterial isolates are essential epidemiological tools in prevention and control of Legionella infections and outbreaks. A selection of 56 out of 184 Legionella pneumophila serogroup 1 (Lp1) clinical isolates, collected from different Italian regions between 1987 and 2012, and stored at the National Reference Laboratory for Legionella, were typed by monoclonal antibody (MAb) subgrouping, amplified fragment length polymorphism (AFLP) and sequence based typing (SBT). These strains were isolated from 39 community (69.6%), 14 nosocomial (25%) and 3 travel associated (5.4%) Legionnaires'disease cases. MAb typing results showed a prevalence of MAb 3/1 positive isolates (75%) with the Philadelphia subgroup representing 35.7%, followed by Knoxville (23.2%), Benidorm (12.5%), Allentown/France (1.8%), Allentown/France-Philadelphia (1.8%). The remaining 25% were MAb 3/1 negative, namely 11 Olda (19.6%), 2 Oxford (3.6%) and 1 Bellingham (1.8%) subgroups. AFLP analysis detected 20 different genomic profiles. SBT analysis revealed 32 different sequence types (STs) with high diversity of STs (IODSTs=0.952) 12 of which were never described before. ST1 and ST23 were most frequently isolated as observed worldwide. A helpful analysis of data from SBT, MAb subgrouping and AFLP is provided, as well as a comparison to the Lp1 types investigated from other countries. This study describes the first Italian Lp1 strains database, providing molecular epidemiology data useful for future epidemiological investigations, especially of travel associated Legionnaires' diseases (TALD) cases, Italy being the country associated with the highest number of clusters. Copyright © 2014 Elsevier GmbH. All rights reserved.

Recognition of Yeast Species from Gene Sequence Comparisons

USDA-ARS?s Scientific Manuscript database

This review discusses recognition of yeast species from gene sequence comparisons, which have been responsible for doubling the number of known yeasts over the past decade. The resolution provided by various single gene sequences is examined for both ascomycetous and basidiomycetous species, and th...

Two Phase Flow Measurements by Nuclear Magnetic Resonance (NMR)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Altobelli, Stephen A; Fukushima, Eiichi

In concentrated suspensions, there is a tendency for the solid phase to migrate from regions of high shear rate to regions of low shear (Leighton & Acrivos, 1987). In the early years that our effort was funded by the DOE Division of Basic Energy Science, quantitative measurement of this process in neutrally buoyant suspensions was a major focus (Abbott, et al., 1991; Altobelli, et al., 1991). Much of this work was used to improve multi-phase numerical models at Sandia National Laboratories. Later, our collaborators at Sandia and the University of New Mexico incorporated body forces into their numerical models ofmore » suspension flow (Rao, Mondy, Sun, et al., 2002). We developed experiments that allow us to study flows driven by buoyancy, to characterize these flows in well-known and useful engineering terms (Altobelli and Mondy, 2002) and to begin to explore the less well-understood area of flows with multiple solid phases (Beyea, Altobelli, et al., 2003). We also studied flows that combine the effects of shear and buoyancy, and flows of suspensions made from non-Newtonian liquids (Rao, Mondy, Baer, et al, 2002). We were able to demonstrate the usefulness of proton NMR imaging of liquid phase concentration and velocity and produced quantitative data not obtainable by other methods. Fluids flowing through porous solids are important in geophysics and in chemical processing. NMR techniques have been widely used to study liquid flow in porous media. We pioneered the extension of these studies to gas flows (Koptyug, et al, 2000, 2000, 2001, 2002). This extension allows us to investigate a wider range of Peclet numbers, and to gather data on problems of interest in catalysis. We devised two kinds of NMR experiments for three-phase systems. Both experiments employ two NMR visible phases and one phase that gives no NMR signal. The earlier method depends on the two visible phases differing in a NMR relaxation property. The second method (Beyea, Altobelli, et al., 2003) uses two different nuclei, protons and 19F. It also uses two different types of NMR image formation, a conventional spin-echo and a single-point method. The single-point method is notable for being useful for imaging materials which are much more rigid than can usually be studied by NMR imaging. We use it to image “low density” polyethylene (LDPE) plastic in this application. We have reduced the imaging time for this three-phase imaging method to less than 10 s per pair of profiles by using new hardware. Directly measuring the solid LDPE signal was a novel feature for multi-phase flow studies. We also used thermally polarized gas NMR (as opposed to hyper-polarized gas) which produces low signal to noise ratios because gas densities are on the order of 1000 times smaller than liquid densities. However since we used multi-atom molecules that have short T1's and operated at elevated pressures we could overcome some of the losses. Thermally polarized gases have advantages over hyperpolarized gases in the ease of preparation, and in maintaining a well-defined polarization. In these studies (Codd and Altobelli, 2003), we used stimulated echo sequences to successfully obtain propagators of gas in bead packs out to observation times of 300 ms. Zarraga, et al. (2000) used laser-sheet profilometry to investigate normal stress differences in concentrated suspensions. Recently we developed an NMR imaging analog for comparison with numerical work that is being performed by Rekha Rao at Sandia National Laboratories (Rao, Mondy, Sun, et al, 2002). A neutrally buoyant suspension of 100 mm PMMA spheres in a Newtonian liquid was sheared in a vertical Couette apparatus inside the magnet. The outer cylinder rotates and the inner cylinder is fixed. At these low rotation rates, the free-surface of the Newtonian liquid shows no measurable deformation, but the suspension clearly shows its non-Newtonian character.« less

The limits of protein sequence comparison?

PubMed Central

Pearson, William R; Sierk, Michael L

2010-01-01

Modern sequence alignment algorithms are used routinely to identify homologous proteins, proteins that share a common ancestor. Homologous proteins always share similar structures and often have similar functions. Over the past 20 years, sequence comparison has become both more sensitive, largely because of profile-based methods, and more reliable, because of more accurate statistical estimates. As sequence and structure databases become larger, and comparison methods become more powerful, reliable statistical estimates will become even more important for distinguishing similarities that are due to homology from those that are due to analogy (convergence). The newest sequence alignment methods are more sensitive than older methods, but more accurate statistical estimates are needed for their full power to be realized. PMID:15919194

Fall Chinook Salmon Spawning Ground Surveys in the Snake River Basin Upriver of Lower Granite Dam, Annual Report 2003.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garcia, A.P.; Bradbury, S.M.; Arnsberg, B.D.

2004-08-01

Redd counts were used to document the spawning distribution of fall chinook salmon (Oncorhynchus tshawytscha) in the Snake River basin upriver of Lower Granite Dam. The first reported redd counts were from aerial searches conducted intermittently between 1959 and 1978 (Irving and Bjornn 1981, Witty 1988; Groves and Chandler 1996)(Appendix 1). In 1986, the Washington Department of Fish and Wildlife began an annual monitoring program that, in addition to the Snake River, included aerial searches of the Grande Ronde River the first year (Seidel and Bugert 1987), and the Imnaha River in subsequent years (Seidel et al. 1988; Bugert etmore » al. 1989-1991; Mendel et al. 1992). The U. S. Fish and Wildlife Service and Idaho Power Company began contributing to this effort in 1991 by increasing the number of aerial searches conducted each year and adding underwater searches in areas of the Snake River that were too deep to be searched from the air (Connor et al. 1993; Garcia et al. 1994a, 1994b, 1996-2003; Groves 1993; Groves and Chandler 1996). The Nez Perce Tribe added aerial searches in the Clearwater River basin beginning in 1988 (Arnsberg et. al 1992) and the Salmon River beginning in 1992. Currently searches are conducted cooperatively by the Nez Perce Tribe, Idaho Power Company, and U. S. Fish and Wildlife Service. Our objective for this report was to consolidate the findings from annual redd searches into a single document containing detailed information about the searches from the most recent spawning season, and summary information from previous years. The work conducted in 2003 was funded by the Bonneville Power Administration (Projects 199801003, 199801004, 199403400, 198335003), Idaho Power Company, and Bureau of Land Management.« less

Evolution of the south Pacific helium plume over the past three decades

NASA Astrophysics Data System (ADS)

Lupton, J. E.; Jenkins, W. J.

2017-05-01

The recent GEOTRACES Eastern Pacific Zonal Transect in 2013 crossed the East Pacific Rise at 15°S following the same track as the 1987 Helios Expedition along the core of the mid-depth helium plume that spreads westward from the East Pacific Rise (EPR) axis. The fact that several stations were co-located with the earlier Helios stations has allowed a detailed comparison of the changes in the helium plume over the intervening 26 years. While the plume in many areas is unchanged, there is a marked decrease in plume intensity at longitude 120°W in the 2013 data which was not present in 1987. Recent radioisotope measurements along the plume track suggest that this decrease is due to the intrusion of a different water mass into the plume, rather than a modulation of hydrothermal input on the EPR axis. Analysis of GEOTRACES hydrographic data shows excess heat present in the plume up to 0.04°C, corresponding to a 3He/heat ratio of ˜2.5 × 10-18 mol J-1, similar to that found in mature hydrothermal vents. RAFOS floats deployed in 1987 indicate an average westward transport of ˜0.3 cm s-1 at 2500 m depth in the off-axis plume, in agreement with recent estimates of ˜0.4 cm s-1 based on "aging" of the plume from 227Ac/3He ratios.

Spatial distribution of radionuclides in 3D models of SN 1987A and Cas A

NASA Astrophysics Data System (ADS)

Janka, Hans-Thomas; Gabler, Michael; Wongwathanarat, Annop

2017-02-01

Fostered by the possibilities of multi-dimensional computational modeling, in particular the advent of three-dimensional (3D) simulations, our understanding of the neutrino-driven explosion mechanism of core-collapse supernovae (SNe) has experienced remarkable progress over the past decade. First self-consistent, first-principle models have shown successful explosions in 3D, and even failed cases may be cured by moderate changes of the microphysics inside the neutron star (NS), better grid resolution, or more detailed progenitor conditions at the onset of core collapse, in particular large-scale perturbations in the convective Si and O burning shells. 3D simulations have also achieved to follow neutrino-driven explosions continuously from the initiation of the blast wave, through the shock breakout from the progenitor surface, into the radioactively powered evolution of the SN, and towards the free expansion phase of the emerging remnant. Here we present results from such simulations, which form the basis for direct comparisons with observations of SNe and SN remnants in order to derive constraints on the still disputed explosion mechanism. It is shown that predictions based on hydrodynamic instabilities and mixing processes associated with neutrino-driven explosions yield good agreement with measured NS kicks, light-curve properties of SN 1987A and asymmetries of iron and 44Ti distributions observed in SN 1987A and Cassiopeia A.

Long-term change in eelgrass distribution at Bahía San Quintín, Baja California, Mexico, using satellite imagery

USGS Publications Warehouse

Ward, David H.; Morton, Alexandra; Tibbitts, T. Lee; Douglas, David C.; Carrera-Gonzalez, Eduardo

2003-01-01

Seagrasses are critically important components of many marine coastal and estuarine ecosystems, but are declining worldwide. Spatial change in distribution of eelgrass, Zostera marina L., was assessed at Bahía San Quintín, Baja California, Mexico, using a map to map comparison of data interpreted from a 1987 Satellite Pour l'Observation de la Terre multispectral satellite image and a 2000 Landsat Enhanced Thematic Mapping image. Eelgrass comprised 49% and 43% of the areal extent of the bay in 1987 and 2000, respectively. Spatial extent of eelgrass was 13% less (-321 ha) in 2000 than in 1987 with most losses occurring in subtidal areas. Over the 13-yr study period, there was a 34% loss of submerged eelgrass (-457 ha) and a 13% (+136 ha) gain of intertidal eelgrass. Within the two types of intertidal eelgrass, the patchy cover class (<85% cover) expanded (+250 ha) and continuous cover class (≥85% cover) declined (-114 ha). Most eelgrass losses were likely the result of sediment loading and turbidity caused by a single flooding event in winter of 1992-1993. Recent large-scale agricultural development of adjacent uplands may have exacerbated the effects of the flood. Oyster farming was not associated with any detectable losses in eelgrass spatial extent, despite the increase in number of oyster racks from 57 to 484 over the study period.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Shannon L.; Minogue, Timothy D.; Teshima, Hazuki

Bacillus cereus strain 03BB87, a blood culture isolate, originated in a 56-year-old male muller operator with a fatal case of pneumonia in 2003. Here we present the finished genome sequence of that pathogen, including a 5.46-Mb chromosome and two plasmids (209 and 52 Kb, respectively).

A decision-theoretic approach to identifying future high-cost patients.

PubMed

Pietz, Kenneth; Byrne, Margaret M; Petersen, Laura A

2006-09-01

The objective of this study was to develop and evaluate a method of allocating funding for very-high-cost (VHC) patients among hospitals. Diagnostic cost groups (DCGs) were used for risk adjustment. The patient population consisted of 253,013 veterans who used Department of Veterans Affairs (VA) medical care services in fiscal year (FY) 2003 (October 1, 2002-September 30, 2003) in a network of 8 VA hospitals. We defined VHC as greater than 75,000 dollars (0.81%). The upper fifth percentile was also used for comparison. A Bayesian decision rule for classifying patients as VHC/not VHC using DCGs was developed and evaluated. The method uses FY 2003 DCGs to allocate VHC funds for FY 2004. We also used FY 2002 DCGs to allocate VHC funds for FY 2003 for comparison. The resulting allocation was compared with using the allocation of VHC patients among the hospitals in the previous year. The decision rule identified DCG 17 as the optimal cutoff for identifying VHC patients for the next year. The previous year's allocation came closest to the actual distribution of VHC patients. The decision-theoretic approach may provide insight into the economic consequences of classifying a patient as VHC or not VHC. More research is needed into methods of identifying future VHC patients so that capitation plans can fairly reimburse healthcare systems for appropriately treating these patients.

A Fair Comparison of the Performance of Computerized Adaptive Testing and Multistage Adaptive Testing

ERIC Educational Resources Information Center

Wang, Keyin

2017-01-01

The comparison of item-level computerized adaptive testing (CAT) and multistage adaptive testing (MST) has been researched extensively (e.g., Kim & Plake, 1993; Luecht et al., 1996; Patsula, 1999; Jodoin, 2003; Hambleton & Xing, 2006; Keng, 2008; Zheng, 2012). Various CAT and MST designs have been investigated and compared under the same…

A Multiple-Sequence Variant of the Multiple-Baseline Design: A Strategy for Analysis of Sequence Effects and Treatment Comparison.

ERIC Educational Resources Information Center

Noell, George H.; Gresham, Frank M.

2001-01-01

Describes design logic and potential uses of a variant of the multiple-baseline design. The multiple-baseline multiple-sequence (MBL-MS) consists of multiple-baseline designs that are interlaced with one another and include all possible sequences of treatments. The MBL-MS design appears to be primarily useful for comparison of treatments taking…

Estimating the Standard Error of Robust Regression Estimates.

DTIC Science & Technology

1987-03-01

error is 0(n4/5). In another Monte Carlo study, McKean and Schrader (1984) found that the tests resulting from studentizing ; by _3d/1/2 with d =0(n4 /5...44 4 -:~~-~*v: -. *;~ ~ ~*t .~ # ~ 44 % * ~ .%j % % % * . ., ~ -%. -14- Sheather, S. J. and McKean, J. W. (1987). A comparison of testing and...Wiley, New York. Welsch, R. E. (1980). Regression Sensitivity Analysis and Bounded- Influence Estimation, in Evaluation of Econometric Models eds. J

Lithospheric buckling and intra-arc stresses: A mechanism for arc segmentation

NASA Technical Reports Server (NTRS)

Nelson, Kerri L.

1989-01-01

Comparison of segment development of a number of arcs has shown that consistent relationships between segmentation, volcanism and variable stresses exists. Researchers successfully modeled these relationships using the conceptual model of lithospheric buckling of Yamaoka et al. (1986; 1987). Lithosphere buckling (deformation) provides the needed mechanism to explain segmentation phenomenon; offsets in volcanic fronts, distribution of calderas within segments, variable segment stresses and the chemical diversity seen between segment boundary and segment interior magmas.

Annotated Bibliography of USAARL Technical and Letter Reports. Volume 1. June 1963 - September 1987

DTIC Science & Technology

1991-05-01

continuous information concerning the duration, ampli- tude and slow-phase velocity of each nystagmic beat during experiments involving the vestibular...one lead of EKG for a full work day. Mean heart rates were tabulated from the record during: Administrative work (87.2 beats per minute), automobile...driving (85.5 beats per minute), eating (90.1 beats per minute), and flying (92.0 beats per minute). Using Tukey’s multiple comparison of means

Visuo-spatial Ability in Individuals with Down Syndrome: Is it Really a Strength?

PubMed Central

Yang, Yingying; Conners, Frances A.; Merrill, Edward C.

2014-01-01

Down syndrome (DS) is associated with extreme difficulty in verbal skills and relatively better visuo-spatial skills. Indeed, visuo-spatial ability is often considered a strength in DS. However, it is not clear whether this strength is only relative to the poor verbal skills, or, more impressively, relative to cognitive ability in general. To answer this question, we conducted an extensive literature review of studies on visuo-spatial abilities in people with Down syndrome from January 1987 to May 2013. Based on a general taxonomy of spatial abilities patterned after Lohman, Pellegrino, Alderton, and Regian (1987) and Carroll (1993) and existing studies of DS, we included five different domains of spatial abilities – visuo-spatial memory, visuo-spatial construction, mental rotation, closure, and wayfinding. We evaluated a total of 49 studies including 127 different comparisons. Most comparisons involved a group with DS vs. a group with typical development matched on mental age and compared on a task measuring one of the five visuo-spatial abilities. Although further research is needed for firm conclusions on some visuo-spatial abilities, there was no evidence that visuo-spatial ability is a strength in DS relative to general cognitive ability. Rather, the review suggests an uneven profile of visuo-spatial abilities in DS in which some abilities are commensurate with general cognitive ability level, and others are below. PMID:24755229

A Workshop Report on Wheat Genome Sequencing

PubMed Central

Gill, Bikram S.; Appels, Rudi; Botha-Oberholster, Anna-Maria; Buell, C. Robin; Bennetzen, Jeffrey L.; Chalhoub, Boulos; Chumley, Forrest; Dvořák, Jan; Iwanaga, Masaru; Keller, Beat; Li, Wanlong; McCombie, W. Richard; Ogihara, Yasunari; Quetier, Francis; Sasaki, Takuji

2004-01-01

Sponsored by the National Science Foundation and the U.S. Department of Agriculture, a wheat genome sequencing workshop was held November 10–11, 2003, in Washington, DC. It brought together 63 scientists of diverse research interests and institutions, including 45 from the United States and 18 from a dozen foreign countries (see list of participants at http://www.ksu.edu/igrow). The objectives of the workshop were to discuss the status of wheat genomics, obtain feedback from ongoing genome sequencing projects, and develop strategies for sequencing the wheat genome. The purpose of this report is to convey the information discussed at the workshop and provide the basis for an ongoing dialogue, bringing forth comments and suggestions from the genetics community. PMID:15514080

Time-Reversal Based Range Extension technique for Ultra-wideband (UWB) Sensors and Applications in Tactical Communications and Networking

DTIC Science & Technology

2010-01-28

has to rely on a uni- polar sequence whose autocorrelation is typically less sharp than that of a bi-polar sequence. Optical orthogonal code (OOC...detection in multipath environments," in Proc. IEEE ICC󈧇, vol. 5, pp. 3530-3534, May 2003. [11] M. Weisenhorn and W. Hirt, "Robust Noncoherent Receiver...M. Duarte, D. Baron, S. Sarvotham, K. Kelly, and R. Baraniuk, "A New Compressive Imaging Camera Architecture using Optical -Domain Compression," in

South Brazilian wines: culturable yeasts associated to bottled wines produced in Rio Grande do Sul and Santa Catarina.

PubMed

Ramírez-Castrillón, Mauricio; Mendes, Sandra Denise Camargo; Valente, Patricia

2017-04-01

A comprehensive understanding of the presence and role of yeasts in bottled wines helps to know and control the organoleptic quality of the final product. The South Region of Brazil is an important wine producer, and the state of "Rio Grande do Sul" (RS) accounts for 90% of Brazilian wines. The state of "Santa Catarina" (SC) started the production in 1975, and is currently the fifth Brazilian producer. As there is little information about yeasts present in Brazilian wines, our main objective was to assess the composition of culturable yeasts associated to bottled wines produced in RS and SC, South of Brazil. We sampled 20 RS and 29 SC bottled wines produced between 2003 and 2011, and we isolated culturable yeasts in non-selective agar plates. We identified all isolates by sequencing of the D1/D2 domain of LSU rDNA or ITS1-5.8 S-ITS2 region, and comparison with type strain sequences deposited in GenBank database. Six yeast species were shared in the final product in both regions. We obtained two spoilage yeast profiles: RS with Zygosaccharomyces bailii and Pichia membranifaciens (Dekkera bruxellensis was found only in specific table wines); and SC with Dekkera bruxellensis and Pichia manshurica. Knowledge concerning the different spoilage profiles is important for winemaking practices in both regions.

Winter air-mass-based synoptic climatological approach and hospital admissions for myocardial infarction in Florence, Italy.

PubMed

Morabito, Marco; Crisci, Alfonso; Grifoni, Daniele; Orlandini, Simone; Cecchi, Lorenzo; Bacci, Laura; Modesti, Pietro Amedeo; Gensini, Gian Franco; Maracchi, Giampiero

2006-09-01

The aim of this study was to evaluate the relationship between the risk of hospital admission for myocardial infarction (MI) and the daily weather conditions during the winters of 1998-2003, according to an air-mass-based synoptic climatological approach. The effects of time lag and 2-day sequences with specific air mass types were also investigated. Studies concerning the relationship between atmospheric conditions and human health need to take into consideration simultaneous effects of many weather variables. At the moment few studies have surveyed these effects on hospitalizations for MI. Analyses were concentrated on winter, when the maximum peak of hospitalization occurred. An objective daily air mass classification by means of statistical analyses based on ground meteorological data was carried out. A comparison between air mass classification and hospital admissions was made by the calculation of a MI admission index, and to detect significant relationships the Mann-Whitney U test, the analysis of variance, and the Bonferroni test were used. Significant increases in hospital admissions for MI were evident 24h after a day characterized by an anticyclonic continental air mass and 6 days after a day characterized by a cyclonic air mass. Increased risk of hospitalization was found even when specific 2-day air mass sequences occurred. These results represent an important step in identifying reliable linkages between weather and health.

Current situation on regulations for mycotoxins. Overview of tolerances and status of standard methods of sampling and analysis.

PubMed

Van Egmond, H P

1989-01-01

A worldwide enquiry was undertaken in 1986-1987 to obtain up-to-date information about mycotoxin legislation in as many countries of the world as possible. Together with some additional data collected in 1981, information is now available about planned, proposed, existing or absence of legislation in 66 countries. Details about tolerances, legal bases, responsible authorities, prescribed methods of sampling and analysis and disposition of commodities containing inadmissible amounts of mycotoxins, are given. The information concerns aflatoxins in foodstuffs, aflatoxin M1 in dairy products, aflatoxins in animal feedstuffs, and other mycotoxins in food- and feedstuffs. In comparison with the situation in 1981, limits and regulations for mycotoxins have been expanded in 1987 with more countries having legislation (proposed or passed) on the subject, more products, and more mycotoxins covered by this legislation. The differences between tolerances in the various countries are sometimes quite large, which makes harmonization of mycotoxin regulations highly desirable.

The occurrence and distribution of trace metals in the Mississippi River and its tributaries

USGS Publications Warehouse

Taylor, Howard E.; Garbarino, J.R.; Brinton, T.I.

1990-01-01

Quantitative and semiquantitative analyses of dissolved trace metals are reported for designated sampling sites on the Mississippi River and its main tributaries utilizing depth-integrated and width-integrated sampling technology to collect statistically representative samples. Data are reported for three sampling periods, including: July-August 1987, November-December 1987, and May-June 1988. Concentrations of Al, As, Ba, Be, Cd, Co, Cr, Cu, Fe, Li, Mn, Mo, Pb, Sr, Tl, U, V, and Zn are reported quantitatively, with the remainder of the stable metals in the periodic table reported semiquantitatively. Correlations between As and V, Ba and U, Cu and Zn, Li and Ba, and Li and U are significant at the 99% confidence level for each of the sampling trips. Comparison of the results of this study for selected metals with other published data show generally good agreement for Cr, Cu, Fe, and Zn, moderate agreement for Mo, and poor agreement for Cd and V.

The extreme heat wave in Athens in July 1987 from the point of view of human biometeorology

NASA Astrophysics Data System (ADS)

Matzarakis, Andreas; Mayer, Helmut

At the end of July 1987 a heat wave came over Greece and had as a consequence an increase in the mortality to double the normal values. Predicted mean vote ( PMV), physiologically equivalent temperature ( PET), and for comparison discomfort index ( DI) as thermal indices as well as core temperature, mean skin temperature, and skin wetness as body parameters are calculated for that period based on meteorological data of the Meteorological Institute of the National Observatory in the centre of Athens and of the suburban station New Philadelphia of the Hellenic National Weather Service. The results for the thermal indices and the body parameters indicate a very high thermal stress on people. In addition, the air quality stress index ( AQSI) has been used for characterizing air quality conditions in Athens during the heat wave. The results Combined with the thermal effects of the heat wave the stress on humans due to environmental conditions has been very injurious to health.

Technology Assessment and Strategy for Development of a Rapid Field Water Microbiology Test Kit

DTIC Science & Technology

1991-09-01

fresh and marine waters (Santiago- Mercado and Hazen 1987; Valdes-Collazo et al. 1987; Perez-Rosas and Hazen 1988; Bermudez and Hazen 1988; Rivera et al...Santiago- Mercado and Hazen 1987; Valdes-Collazo et al. 1987). Investigators are constantly improving the coltform-MF technique as it is the... Mercado and Hazen 1987; Valdes-Collazo et al. 1987; Perez-Rosas and Hazen 1988; Bermudez and Hazen 1988; Rivera et al. 1988). The tropical conditions

UFO: a web server for ultra-fast functional profiling of whole genome protein sequences.

PubMed

Meinicke, Peter

2009-09-02

Functional profiling is a key technique to characterize and compare the functional potential of entire genomes. The estimation of profiles according to an assignment of sequences to functional categories is a computationally expensive task because it requires the comparison of all protein sequences from a genome with a usually large database of annotated sequences or sequence families. Based on machine learning techniques for Pfam domain detection, the UFO web server for ultra-fast functional profiling allows researchers to process large protein sequence collections instantaneously. Besides the frequencies of Pfam and GO categories, the user also obtains the sequence specific assignments to Pfam domain families. In addition, a comparison with existing genomes provides dissimilarity scores with respect to 821 reference proteomes. Considering the underlying UFO domain detection, the results on 206 test genomes indicate a high sensitivity of the approach. In comparison with current state-of-the-art HMMs, the runtime measurements show a considerable speed up in the range of four orders of magnitude. For an average size prokaryotic genome, the computation of a functional profile together with its comparison typically requires about 10 seconds of processing time. For the first time the UFO web server makes it possible to get a quick overview on the functional inventory of newly sequenced organisms. The genome scale comparison with a large number of precomputed profiles allows a first guess about functionally related organisms. The service is freely available and does not require user registration or specification of a valid email address.

A Lossy Compression Technique Enabling Duplication-Aware Sequence Alignment

PubMed Central

Freschi, Valerio; Bogliolo, Alessandro

2012-01-01

In spite of the recognized importance of tandem duplications in genome evolution, commonly adopted sequence comparison algorithms do not take into account complex mutation events involving more than one residue at the time, since they are not compliant with the underlying assumption of statistical independence of adjacent residues. As a consequence, the presence of tandem repeats in sequences under comparison may impair the biological significance of the resulting alignment. Although solutions have been proposed, repeat-aware sequence alignment is still considered to be an open problem and new efficient and effective methods have been advocated. The present paper describes an alternative lossy compression scheme for genomic sequences which iteratively collapses repeats of increasing length. The resulting approximate representations do not contain tandem duplications, while retaining enough information for making their comparison even more significant than the edit distance between the original sequences. This allows us to exploit traditional alignment algorithms directly on the compressed sequences. Results confirm the validity of the proposed approach for the problem of duplication-aware sequence alignment. PMID:22518086

Error reduction and parameter optimization of the TAPIR method for fast T1 mapping.

PubMed

Zaitsev, M; Steinhoff, S; Shah, N J

2003-06-01

A methodology is presented for the reduction of both systematic and random errors in T(1) determination using TAPIR, a Look-Locker-based fast T(1) mapping technique. The relations between various sequence parameters were carefully investigated in order to develop recipes for choosing optimal sequence parameters. Theoretical predictions for the optimal flip angle were verified experimentally. Inversion pulse imperfections were identified as the main source of systematic errors in T(1) determination with TAPIR. An effective remedy is demonstrated which includes extension of the measurement protocol to include a special sequence for mapping the inversion efficiency itself. Copyright 2003 Wiley-Liss, Inc.

Molecular epidemiology of measles viruses in China, 1995–2003

PubMed Central

Zhang, Yan; Zhu, Zhen; Rota, Paul A; Jiang, Xiaohong; Hu, Jiayu; Wang, Jianguo; Tang, Wei; Zhang, Zhenying; Li, Congyong; Wang, Changyin; Wang, Tongzhan; Zheng, Lei; Tian, Hong; Ling, Hua; Zhao, Chunfang; Ma, Yan; Lin, Chunyan; He, Jilan; Tian, Jiang; Ma, Yan; Li, Ping; Guan, Ronghui; He, Weikuan; Zhou, Jianhui; Liu, Guiyan; Zhang, Hong; Yan, Xinge; Yang, Xuelei; Zhang, Jinlin; Lu, Yiyu; Zhou, Shunde; Ba, Zhuoma; Liu, Wei; Yang , Xiuhui; Ma, Yujie; Liang, Yong; Li, Yeqiang; Ji, Yixin; Featherstone, David; Bellini, William J; Xu, Songtao; Liang, Guodong; Xu, Wenbo

2007-01-01

This report describes the genetic characterization of 297 wild-type measles viruses that were isolated in 24 provinces of China between 1995 and 2003. Phylogenetic analysis of the N gene sequences showed that all of the isolates belonged to genotype H1 except 3 isolates, which were genotype A. The nucleotide sequence and predicted amino acid homologies of the 294-genotype H1 strains were 94.7%–100% and 93.3%–100%, respectively. The genotype H1 isolates were divided into 2 clusters, which differed by approximately 2.9% at the nucleotide level. Viruses from both clusters were distributed throughout China with no apparent geographic restriction and multiple co-circulating lineages were present in many provinces. Even though other measles genotypes have been detected in countries that border China, this report shows that genotype H1 is widely distributed throughout the country and that China has a single, endemic genotype. This important baseline data will help to monitor the progress of measles control in China. PMID:17280609

New powerful statistics for alignment-free sequence comparison under a pattern transfer model.

PubMed

Liu, Xuemei; Wan, Lin; Li, Jing; Reinert, Gesine; Waterman, Michael S; Sun, Fengzhu

2011-09-07

Alignment-free sequence comparison is widely used for comparing gene regulatory regions and for identifying horizontally transferred genes. Recent studies on the power of a widely used alignment-free comparison statistic D2 and its variants D*2 and D(s)2 showed that their power approximates a limit smaller than 1 as the sequence length tends to infinity under a pattern transfer model. We develop new alignment-free statistics based on D2, D*2 and D(s)2 by comparing local sequence pairs and then summing over all the local sequence pairs of certain length. We show that the new statistics are much more powerful than the corresponding statistics and the power tends to 1 as the sequence length tends to infinity under the pattern transfer model. Copyright © 2011 Elsevier Ltd. All rights reserved.

New Powerful Statistics for Alignment-free Sequence Comparison Under a Pattern Transfer Model

PubMed Central

Liu, Xuemei; Wan, Lin; Li, Jing; Reinert, Gesine; Waterman, Michael S.; Sun, Fengzhu

2011-01-01

Alignment-free sequence comparison is widely used for comparing gene regulatory regions and for identifying horizontally transferred genes. Recent studies on the power of a widely used alignment-free comparison statistic D2 and its variants D2∗ and D2s showed that their power approximates a limit smaller than 1 as the sequence length tends to infinity under a pattern transfer model. We develop new alignment-free statistics based on D2, D2∗ and D2s by comparing local sequence pairs and then summing over all the local sequence pairs of certain length. We show that the new statistics are much more powerful than the corresponding statistics and the power tends to 1 as the sequence length tends to infinity under the pattern transfer model. PMID:21723298

Multiple alignment-free sequence comparison

PubMed Central

Ren, Jie; Song, Kai; Sun, Fengzhu; Deng, Minghua; Reinert, Gesine

2013-01-01

Motivation: Recently, a range of new statistics have become available for the alignment-free comparison of two sequences based on k-tuple word content. Here, we extend these statistics to the simultaneous comparison of more than two sequences. Our suite of statistics contains, first, and , extensions of statistics for pairwise comparison of the joint k-tuple content of all the sequences, and second, , and , averages of sums of pairwise comparison statistics. The two tasks we consider are, first, to identify sequences that are similar to a set of target sequences, and, second, to measure the similarity within a set of sequences. Results: Our investigation uses both simulated data as well as cis-regulatory module data where the task is to identify cis-regulatory modules with similar transcription factor binding sites. We find that although for real data, all of our statistics show a similar performance, on simulated data the Shepp-type statistics are in some instances outperformed by star-type statistics. The multiple alignment-free statistics are more sensitive to contamination in the data than the pairwise average statistics. Availability: Our implementation of the five statistics is available as R package named ‘multiAlignFree’ at be http://www-rcf.usc.edu/∼fsun/Programs/multiAlignFree/multiAlignFreemain.html. Contact: reinert@stats.ox.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online. PMID:23990418

Methods of analysis by the U.S. Geological Survey National Water Quality Laboratory; determination of selected carbamate pesticides in water by high-performance liquid chromatography

USGS Publications Warehouse

Werner, S.L.; Johnson, S.M.

1994-01-01

As part of its primary responsibility concerning water as a national resource, the U.S. Geological Survey collects and analyzes samples of ground water and surface water to determine water quality. This report describes the method used since June 1987 to determine selected total-recoverable carbamate pesticides present in water samples. High- performance liquid chromatography is used to separate N-methyl carbamates, N-methyl carbamoyloximes, and an N-phenyl carbamate which have been extracted from water and concentrated in dichloromethane. Analytes, surrogate compounds, and reference compounds are eluted from the analytical column within 25 minutes. Two modes of analyte detection are used: (1) a photodiode-array detector measures and records ultraviolet-absorbance profiles, and (2) a fluorescence detector measures and records fluorescence from an analyte derivative produced when analyte hydrolysis is combined with chemical derivatization. Analytes are identified and confirmed in a three-stage process by use of chromatographic retention time, ultraviolet (UV) spectral comparison, and derivatization/fluorescence detection. Quantitative results are based on the integration of single-wavelength UV-absorbance chromatograms and on comparison with calibration curves derived from external analyte standards that are run with samples as part of an instrumental analytical sequence. Estimated method detection limits vary for each analyte, depending on the sample matrix conditions, and range from 0.5 microgram per liter to as low as 0.01 microgram per liter. Reporting levels for all analytes have been set at 0.5 microgram per liter for this method. Corrections on the basis of percentage recoveries of analytes spiked into distilled water are not applied to values calculated for analyte concentration in samples. These values for analyte concentrations instead indicate the quantities recovered by the method from a particular sample matrix.

[Emergency department activity during the 2003 summer heat wave].

PubMed

Trejo, Olga; Miró, Oscar; de la Red, Gloria; Collvinent, Blanca; Bragulat, Ernest; Asenjo, Miguel A; Salmerón, Joan M; Sánchez, Miquel

2005-07-09

Several thousands deaths were attributed to a heatwave during the summer of 2003 in Europe. The aim of this study was to analyze its consequences in an emergency department. We performed a descriptive observational study of the patients admitted to our emergency unit between 15 July and 31 August, 2003. We also carried out a comparative study of these patients with those admitted during the same period of 2002. A total of 5197 patients were admitted in our unit during the summer of 2003, in comparison with 4672 in the same interval in 2002. An increase in rates of total fever (17% versus 12%; p < 0.001), non-infectious fever (29% versus 26%; p < 0.001), decompensation of a chronic cardiovascular or respiratory disease (14% versus 11%; p < 0.001), admission (28% versus 22%; p < 0.001), and mortality (2% versus 1%; p < 0.001) were registered during the summer of 2003, in comparison with the previous year. A multivariate study showed a higher risk of death in patients older than 70 years (p < 0.01), in fragile dependent people (p < 0.05), and upon the presence of abnormal blood levels of creatinine (p < 0.05) on arrival at the emergency department. We also found an association between daily maxim temperature and number of daily emergency visits (R2 = 0.15; p < 0.001), total percentage of patients with fever (R2 = 0.26; p < 0.001), percentage of patients with non-infectious fever (R2 = 0.07; p = 0.01), percentage of decreases (R2 = 0.04; p < 0.05), and percentage of hospital admissions (R2 = 0.15; p < 0.001). The summer 2003 heatwave resulted in an elevation of the total number of emergency visits and hospital admissions, and higher mortality and morbidity rates, especially in old people. In the future, preventive measures must be taken to limit the health consequences of any heatwaves to come.

Recruiting Minority Men Who Have Sex With Men for HIV Research: Results From a 4-City Campaign

PubMed Central

Silvestre, Anthony J.; Hylton, John B.; Johnson, Lisette M.; Houston, Carmoncelia; Witt, Mallory; Jacobson, Lisa; Ostrow, David

2006-01-01

We describe the efforts of a 4-city campaign to recruit Black and Hispanic men who have sex with men into an established HIV epidemiological study. The campaign used community organizing principles and a social marketing model that focused on personnel, location, product, costs and benefits, and promotion. The campaign was developed at the community, group, and individual levels to both increase trust and reduce barriers. The proportion of Hispanic men recruited during the 2002–2003 campaign doubled compared with the 1987 campaign, and the proportion and number of White men decreased by 20%. The proportion of Black men decreased because of the large increase in Hispanic men, although the number of Black men increased by 56%. Successful recruitment included training recruitment specialists, involving knowledgeable minority community members during planning, and having an accessible site with convenient hours. PMID:16670218

Blue Mountains Ecoregion: Chapter 16 in Status and trends of land change in the Western United States--1973 to 2000

USGS Publications Warehouse

Soulard, Christopher E.

2012-01-01

The Blue Mountains Ecoregion encompasses approximately 65,461 km² (25,275 mi²) of land bordered on the north by the Columbia Plateau Ecoregion, on the east by the Northern Rockies Ecoregion, on the south by the Snake River Basin and the Northern Basin and Range Ecoregions, and on the west by the Cascades and the Eastern Cascades Slopes and Foothills Ecoregions (fig. 1) (Omernik, 1987; U.S. Environmental Protection Agency, 1997). Most of the Blue Mountains Ecoregion is located within Oregon (83.5 percent); 13.8 percent is in Idaho, and 2.7 percent is in Washington. The Blue Mountains are composed of primarily Paleozoic volcanic rocks, with minor sedimentary, metamorphic, and granitic rocks. Lower mountains and numerous basin-and-range areas, as well as the lack of Quaternary-age volcanoes, distinguish the Blue Mountains from the adjacent Cascade Range (Thorson and others, 2003).

Football and exchange rates: empirical support for behavioral economics.

PubMed

Eker, Gulin; Berument, Hakan; Dogan, Burak

2007-10-01

Recently, economic theory has been expanded to incorporate emotions, which have been assumed to play an important role in financial decisions. The present study illustrates this by showing a connection between the sports performance of popular national football teams (Besiktas, Fenerbahce, and Galatasaray) and performance of the Turkish economy. Specifically, a significant positive association was found between the success of three major professional Turkish football teams and the exchange rate of the Turkish lira against the U.S. dollar. The effect of the football success of several Turkish football teams on the exchange rate of the Turkish lira was examined using the simultaneous multiple regression model with predictor measures of wins, losses, and ties for different combinations of teams to predict the depreciation rate of the Turkish lira between the years 1987 and 2003. Wins by Turkish football teams against foreign (non-Turkish) rivals increased with exchange rate depreciation of the Turkish lira against the U.S. dollar.

Engagement with beauty: appreciating natural, artistic, and moral beauty.

PubMed

Diessner, Rhett; Solom, Rebecca C; Frost, Nellie K; Parsons, Lucas; Davidson, John

2008-05-01

The Engagement With Beauty Scale (EBS), designed from the aesthetics of I. Kant (1790/1987), G. W. F. Hegel (ca. 1835/1993), and T. Aquinas (ca. 1260/1947) and the psychological work of J. Haidt (J. Haidt & D. Keltner, 2004), measures engagement with natural, artistic, and moral beauty. In Studies 1 and 2, the authors describe scale construction, exploratory factor analysis, confirmatory factor analysis, internal consistency, and temporal stability. In Studies 1 and 2, the authors also establish concurrent validity with the Appreciation of Beauty and Excellence subscale of the Values in Action Inventory of Strengths (C. Peterson & M. E. P. Seligman, 2004), the Gratitude, Resentment, and Appreciation Test (P. C. Watkins, K. Woodward, T. Stone, & R. L. Kolts, 2003), and the Spiritual Transcendence Scale (R. L. Piedmont, 2004). In Study 3, the authors used the EBS Artistic Beauty subscale to differentiate students engaged in the arts from those who were not.

Biofuels from Microalgae and Seaweeds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huesemann, Michael H.; Roesijadi, Guritno; Benemann, John

2010-03-01

8.1 Introduction: Seaweeds and microalgae have a long history of cultivation as sources of commercial products (McHugh 2003; Pulz and Gross 2004). They also have been the subject of extensive investigations related to their potential as fuel source since the 1970s (Chynoweth 2002). As energy costs rise, these photosynthetic organisms are again a focus of interest as potential sources of biofuels, particularly liquid transportation fuels. There have been many recent private sector investments to develop biofuels from microalgae, in part building on a U.S. Department of Energy (DOE) program from 1976 to 1996 which focused on microalgal oil production (Sheehanmore » et al. 1998). Seaweed cultivation has received relatively little attention as a biofuel source in the US, but was the subject of a major research effort by the DOE from 1978 to 1983 (Bird and Benson 1987), and is now the focus of significant interest in Japan, Europe and Korea...« less

Cellodextrin utilization by bifidobacterium breve UCC2003.

PubMed

Pokusaeva, Karina; O'Connell-Motherway, Mary; Zomer, Aldert; Macsharry, John; Fitzgerald, Gerald F; van Sinderen, Douwe

2011-03-01

Cellodextrins, the incomplete hydrolysis products from insoluble cellulose, are accessible as a carbon source to certain members of the human gut microbiota, such as Bifidobacterium breve UCC2003. Transcription of the cldEFGC gene cluster of B. breve UCC2003 was shown to be induced upon growth on cellodextrins, implicating this cluster in the metabolism of these sugars. Phenotypic analysis of a B. breve UCC2003::cldE insertion mutant confirmed that the cld gene cluster is exclusively required for cellodextrin utilization by this commensal. Moreover, our results suggest that transcription of the cld cluster is controlled by a LacI-type regulator encoded by cldR, located immediately upstream of cldE. Gel mobility shift assays using purified CldR(His) (produced by the incorporation of a His(12)-encoding sequence into the 3' end of the cldC gene) indicate that the cldEFGC promoter is subject to negative control by CldR(His), which binds to two inverted repeats. Analysis by high-performance anion-exchange chromatography with pulsed amperometric detection (HPAEC-PAD) of medium samples obtained during growth of B. breve UCC2003 on a mixture of cellodextrins revealed its ability to utilize cellobiose, cellotriose, cellotetraose, and cellopentaose, with cellotriose apparently representing the preferred substrate. The cldC gene of the cld operon of B. breve UCC2003 is, to the best of our knowledge, the first described bifidobacterial β-glucosidase exhibiting hydrolytic activity toward various cellodextrins.

Modeling of Ionosphere Effects of Geomagnetic Storm Sequence on September 9-14, 2005 in View of Solar Flares and Dependence of Model Input Parameters from AE-and Kp-indices

NASA Astrophysics Data System (ADS)

Klimenko, Maxim; Klimenko, Vladimir; Ratovsky, Konstantin; Goncharenko, Larisa

Earlier by Klimenko et al., 2009 under carrying out the calculations of the ionospheric effects of storm sequence on September 9-14, 2005 the model input parameters (potential difference through polar caps, field-aligned currents of the second region and particle precipitation fluxes and energy) were set as function of Kp-index of geomagnetic activity. The analyses of obtained results show that the reasons of quantitative distinctions of calculation results and observations can be: the use of 3 hour Kp-index at the setting of time dependence of model input parameters; the dipole approach of geomagnetic field; the absence in model calculations the effects of the solar flares, which were taken place during the considered period. In the given study the model input parameters were set as function of AE-and Kp-indices of geomagnetic activity according to different empirical models and morphological representations Feshchenko and Maltsev, 2003; Cheng et al., 2008; Zhang and Paxton, 2008. At that, we taken into account the shift of field-aligned currents of the second region to the lower latitudes as by Sojka et al., 1994 and 30 min. time delay of variations of the field-aligned currents of second region relative to the variations of the potential difference through polar caps at the storm sudden commencement phase. Also we taken into account the ionospheric effects of solar flares. Calculation of ionospheric effects of storm sequence has been carried out with use of the Global Self-Consistent Model of the Thermosphere, Ionosphere and Protonosphere (GSM TIP) developed in WD IZMIRAN (Nam-galadze et al., 1988). We carried out the comparison of calculation results with experimental data. This study is supported by RFBR grant 08-05-00274. References Cheng Z.W., Shi J.K., Zhang T.L., Dunlop M. and Liu Z.X. Relationship between FAC at plasma sheet boundary layers and AE index during storms from August to October, 2001. Sci. China Ser. E-Tech. Sci., 2008, Vol. 51, No. 7, 842-848. Feshchenko E.Yu., Maltsev Yu.P. Relations of the polar cap voltage to the geophysical activity. Physics of Auroral Phenomena: XXVI Annual Seminar (February 25-28, 2003): Proc./PGI KSC RAS. Apatity, 2003, 59-61. Klimenko M.V., Klimenko V.V., Ratovsky K.G., and Goncharenko L.P. Numerical modeling of ionospheric parameters during sequence of geomagnetic storms on September 9-14, 2005. Physics of Auroral Phenomena: XXXII Annual Seminar (March 3-6, 2009): Proc./PGI KSC RAS. Apatity, 2009, 162-165. Namgaladze A.A., Korenkov Yu.N., Klimenko V.V., Karpov I.V., Bessarab F.S., Surotkin V.A., Glushenko T.A., Naumova N.M. Global model of the thermosphere-ionosphere-protonosphere system. Pure and Applied Geophysics (PAGEOPH), 1988, Vol. 127, No. 2/3, 219-254. Sojka J.J., Schunk R.W., Denig W.F. Ionospheric response to the sustained high geomagnetic activity during the March '89 great storm. J. Geophys. Res., 1994, Vol. 99, No. A11, 21341-21352. Zhang Y., Paxton L.J. An empirical Kp-dependent global auroral model based on TIMED/GUVI FUV data. J. Atmos. Solar-Terr. Phys., 2008, Vol. 70, 1231-1242.

The phosphoric acid leak from the wreck of the MV Ece in the English Channel in 2006: Assessment with a ship of opportunity, an operational ecosystem model and historical data.

PubMed

Kelly-Gerreyn, Boris A; Hydes, David J; Hartman, Mark C; Siddorn, John; Hyder, Patrick; Holt, Martin W

2007-07-01

This study evaluates the ship of opportunity (Ferrybox) concept for both sustained monitoring of UK shelf sea waters and numerical model validation. Release of phosphate from the wreck of a chemical tanker (MV Ece) in the western English Channel (49.73 degrees N, 3.25 degrees W) in March 2006 is used to demonstrate the importance of sustained observations in decision support systems and policy development. The Ferrybox system continuously collects sea surface (5m) data from a suite of autonomous electronic sensors installed on a passenger ferry operating year-round between Portsmouth (UK) and Bilbao (Spain). The detection of anomalously high concentrations of phosphate (1.54mmolm(-3), four times the usual level) and onset of phytoplankton growth close to the wreck site in March 2006 was placed in the context of multiple years of measurements (phosphate, nitrate, silicate and chlorophyll) collected from the Ferrybox system (2003-2006) and the long-term time series station E1 (50.03 degrees N, 4.65 degrees W, 1930-1987) in the English Channel. With regard to decision support, release of phosphate from the tanker is unlikely to pose a threat as phytoplankton growth at the end of winter is not unusual in this region and dissolved inorganic nitrogen rather than phosphate (DIN:DIP=10-18) is likely to ultimately limit algal growth in spring 2006. With regard to policy development, the Oslo and Paris (OSPAR) commissions recommendation of sampling every three years in "non-problem areas" is likely to provide statistically inadequate data, given the interannual and decadal variability identified in the Ferrybox and E1 data: the Ferrybox data show that oceanic winter nutrient concentrations varied by 35-50% between 2003/2004 and 2005/2006 due to deeper mixing of water off-shelf in early 2005/2006 and comparisons between the Ferrybox and E1 years show that the western English Channel is currently experiencing a low in phosphate concentrations similar to those in the 1960s. The importance of Ferrybox data in evaluating the reliability of predictive operational models needed in decision support is also demonstrated, by highlighting both strengths and weaknesses in a state-of-the-art ecosystem model designed for UK shelf waters.

Phylogenetic shadowing of primate sequences to find functional regions of the human genome.

PubMed

Boffelli, Dario; McAuliffe, Jon; Ovcharenko, Dmitriy; Lewis, Keith D; Ovcharenko, Ivan; Pachter, Lior; Rubin, Edward M

2003-02-28

Nonhuman primates represent the most relevant model organisms to understand the biology of Homo sapiens. The recent divergence and associated overall sequence conservation between individual members of this taxon have nonetheless largely precluded the use of primates in comparative sequence studies. We used sequence comparisons of an extensive set of Old World and New World monkeys and hominoids to identify functional regions in the human genome. Analysis of these data enabled the discovery of primate-specific gene regulatory elements and the demarcation of the exons of multiple genes. Much of the information content of the comprehensive primate sequence comparisons could be captured with a small subset of phylogenetically close primates. These results demonstrate the utility of intraprimate sequence comparisons to discover common mammalian as well as primate-specific functional elements in the human genome, which are unattainable through the evaluation of more evolutionarily distant species.

Interventions for unilateral refractive amblyopia.

PubMed

Shotton, Kate; Powell, Christine; Voros, Gerasimos; Hatt, Sarah R

2008-10-08

Unilateral refractive amblyopia is a common cause of reduced visual acuity in childhood, but optimal treatment is not well defined. This review examined the treatment effect from spectacles and conventional occlusion. Evaluation of the evidence of the effectiveness of spectacles and or occlusion in the treatment of unilateral refractive amblyopia. We searched the Cochrane Central Register of Controlled Trials (CENTRAL), MEDLINE, EMBASE and LILACS. Relevant conference proceedings were manually searched. There were no date or language restrictions. The searches were last run on 7 July 2008. Randomised controlled trials of treatment for unilateral refractive amblyopia by spectacles, with or without occlusion were eligible. We included studies with participants of any age. Two authors independently assessed abstracts identified by the searches. We obtained full text copies and contacted study authors where necessary. Eight trials were eligible for inclusion. Data were extracted from seven. No meta-analysis was performed. For all studies mean acuity (standard deviation (SD)) in the amblyopic eye post treatment is reported.Comparison: Spectacles only versus no treatment (Clarke 2003). Mean (SD) visual acuity: spectacles group 0.31 (0.17); no treatment group 0.42 (0.19). Mean difference (MD) between groups -0.11 (borderline statistical significance: 95% confidence interval (CI) -0.22 to 0.00).Comparison: Spectacles plus occlusion versus no treatment (Clarke 2003). Mean (SD) visual acuity: full treatment 0.22 (0.13); no treatment 0.42 (0.19). Mean difference between the groups -0.20 (statistically significant: 95% CI -0.30 to -0.10).Comparison: Spectacles plus occlusion versus spectacles only: Clarke 2003 MD -0.09 (borderline statistical significance 95% CI, -0.18 to 0.00); PEDIG 2005b; MD -0.15 (not statistically significant 95% CI -0.32 to 0.02); PEDIG 2006a; MD 0.01 (not statistically significant 95% CI -0.08 to 0.10).Comparison: Occlusion regimes. PEDIG 2003a: 2 hours versus 6 hours for moderate amblyopia: MD 0.01 (not statistically significant: 95% CI -0.06 to 0.08); PEDIG 2003b: 6 hours versus full-time for severe amblyopia: MD 0.03 (not statistically significant: 95% CI -0.08 to 0.14). Stewart 2007a: 6 hours versus full-time occlusion: MD -0.12 (not statistically significant: 95% CI -0.27 to 0.03) In some cases of unilateral refractive amblyopia it appears that there is a treatment benefit from refractive correction alone. Where amblyopia persists there is some evidence that adding occlusion further improves vision. It remains unclear which treatment regimes are optimal for individual patients. The nature of any dose/response effect from occlusion still needs to be clarified.

Phylogenetic Analysis of Rubella Viruses Identified in Uganda, 2003–2012

PubMed Central

Namuwulya, Prossy; Abernathy, Emily; Bukenya, Henry; Bwogi, Josephine; Tushabe, Phionah; Birungi, Molly; Seguya, Ronald; Kabaliisa, Theopista; Alibu, Vincent P.; Kayondo, Jonathan K.; Rivailler, Pierre; Icenogle, Joseph; Bakamutumaho, Barnabas

2014-01-01

Molecular data on rubella viruses are limited in Uganda despite the importance of congenital rubella syndrome (CRS). Routine rubella vaccination, while not administered currently in Uganda, is expected to begin by 2015. The World Health Organization recommends that countries without rubella vaccination programs assess the burden of rubella and CRS before starting a routine vaccination program. Uganda is already involved in integrated case-based surveillance, including laboratory testing to confirm measles and rubella, but molecular epidemiologic aspects of rubella circulation have so far not been documented in Uganda. Twenty throat swab or oral fluid samples collected from 12 districts during routine rash and fever surveillance between 2003 and 2012 were identified as rubella virus RNA positive and PCR products encompassing the region used for genotyping were sequenced. Phylogenetic analysis of the 20 sequences identified 19 genotype 1G viruses and 1 genotype 1E virus. Genotype-specific trees showed that the Uganda viruses belonged to specific clusters for both genotypes 1G and 1E and grouped with similar sequences from neighboring countries. Genotype 1G was predominant in Uganda. More epidemiological and molecular epidemiological data are required to determine if genotype 1E is also endemic in Uganda. The information obtained in this study will assist the immunization program in monitoring changes in circulating genotypes. PMID:24700073

Sequence-based characterization of  Listeria monocytogenes  strains isolated from domestic retail meat in the Tokyo metropolitan area of Japan.

PubMed

Yoshikawa, Yuko; Ochiai, Yoshitsugu; Mochizuki, Mariko; Takano, Takashi; Hondo, Ryo; Ueda, Fukiko

2018-05-31

To assess the level of Listeria monocytogenes contamination of domestic retail meat in Tokyo, Japan, we compared isolates from 2004 to 2007 with those isolated before 2003. The overall prevalence of L. monocytogenes among these samples significantly diminished over time (1998-2003, 28.0%; 2004-2007, 17.6%) reflecting a significant decrease in the frequency of contamination of beef. Serotype 1/2a was isolated most frequently, reflecting a change in the predominant serotype in pork from 1/2c to 1/2a. We performed a simple genetic subtyping method based on three genes, iap, sigB, and actA, as well as traditional multilocus sequence typing to classify the allele types (ATs). No extensive variation among sequence types was detected; however, increased genetic diversity among the ATs of the three genes in the 2004-2007 isolates was evident. We identified AT 26 of the iap gene, not previously reported in Japanese isolates, and six ATs of the sigB gene, including four with nonsense mutations not currently registered in L. monocytogenes DNA databases. sigB is an evolutionally conserved gene that plays a role in the stress response. Our results indicate that the sigB gene may be relatively unstable among L. monocytogenes strains circulating in Japan.

Phylogenetic analysis of rubella viruses identified in Uganda, 2003-2012.

PubMed

Namuwulya, Prossy; Abernathy, Emily; Bukenya, Henry; Bwogi, Josephine; Tushabe, Phionah; Birungi, Molly; Seguya, Ronald; Kabaliisa, Theopista; Alibu, Vincent P; Kayondo, Jonathan K; Rivailler, Pierre; Icenogle, Joseph; Bakamutumaho, Barnabas

2014-12-01

Molecular data on rubella viruses are limited in Uganda despite the importance of congenital rubella syndrome (CRS). Routine rubella vaccination, while not administered currently in Uganda, is expected to begin by 2015. The World Health Organization recommends that countries without rubella vaccination programs assess the burden of rubella and CRS before starting a routine vaccination program. Uganda is already involved in integrated case-based surveillance, including laboratory testing to confirm measles and rubella, but molecular epidemiologic aspects of rubella circulation have so far not been documented in Uganda. Twenty throat swab or oral fluid samples collected from 12 districts during routine rash and fever surveillance between 2003 and 2012 were identified as rubella virus RNA positive and PCR products encompassing the region used for genotyping were sequenced. Phylogenetic analysis of the 20 sequences identified 19 genotype 1G viruses and 1 genotype 1E virus. Genotype-specific trees showed that the Uganda viruses belonged to specific clusters for both genotypes 1G and 1E and grouped with similar sequences from neighboring countries. Genotype 1G was predominant in Uganda. More epidemiological and molecular epidemiological data are required to determine if genotype 1E is also endemic in Uganda. The information obtained in this study will assist the immunization program in monitoring changes in circulating genotypes. © 2014 Wiley Periodicals, Inc.

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

PubMed Central

2011-01-01

Background Visualisation of genome comparisons is invaluable for helping to determine genotypic differences between closely related prokaryotes. New visualisation and abstraction methods are required in order to improve the validation, interpretation and communication of genome sequence information; especially with the increasing amount of data arising from next-generation sequencing projects. Visualising a prokaryote genome as a circular image has become a powerful means of displaying informative comparisons of one genome to a number of others. Several programs, imaging libraries and internet resources already exist for this purpose, however, most are either limited in the number of comparisons they can show, are unable to adequately utilise draft genome sequence data, or require a knowledge of command-line scripting for implementation. Currently, there is no freely available desktop application that enables users to rapidly visualise comparisons between hundreds of draft or complete genomes in a single image. Results BLAST Ring Image Generator (BRIG) can generate images that show multiple prokaryote genome comparisons, without an arbitrary limit on the number of genomes compared. The output image shows similarity between a central reference sequence and other sequences as a set of concentric rings, where BLAST matches are coloured on a sliding scale indicating a defined percentage identity. Images can also include draft genome assembly information to show read coverage, assembly breakpoints and collapsed repeats. In addition, BRIG supports the mapping of unassembled sequencing reads against one or more central reference sequences. Many types of custom data and annotations can be shown using BRIG, making it a versatile approach for visualising a range of genomic comparison data. BRIG is readily accessible to any user, as it assumes no specialist computational knowledge and will perform all required file parsing and BLAST comparisons automatically. Conclusions There is a clear need for a user-friendly program that can produce genome comparisons for a large number of prokaryote genomes with an emphasis on rapidly utilising unfinished or unassembled genome data. Here we present BRIG, a cross-platform application that enables the interactive generation of comparative genomic images via a simple graphical-user interface. BRIG is freely available for all operating systems at http://sourceforge.net/projects/brig/. PMID:21824423

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons.

PubMed

Alikhan, Nabil-Fareed; Petty, Nicola K; Ben Zakour, Nouri L; Beatson, Scott A

2011-08-08

Visualisation of genome comparisons is invaluable for helping to determine genotypic differences between closely related prokaryotes. New visualisation and abstraction methods are required in order to improve the validation, interpretation and communication of genome sequence information; especially with the increasing amount of data arising from next-generation sequencing projects. Visualising a prokaryote genome as a circular image has become a powerful means of displaying informative comparisons of one genome to a number of others. Several programs, imaging libraries and internet resources already exist for this purpose, however, most are either limited in the number of comparisons they can show, are unable to adequately utilise draft genome sequence data, or require a knowledge of command-line scripting for implementation. Currently, there is no freely available desktop application that enables users to rapidly visualise comparisons between hundreds of draft or complete genomes in a single image. BLAST Ring Image Generator (BRIG) can generate images that show multiple prokaryote genome comparisons, without an arbitrary limit on the number of genomes compared. The output image shows similarity between a central reference sequence and other sequences as a set of concentric rings, where BLAST matches are coloured on a sliding scale indicating a defined percentage identity. Images can also include draft genome assembly information to show read coverage, assembly breakpoints and collapsed repeats. In addition, BRIG supports the mapping of unassembled sequencing reads against one or more central reference sequences. Many types of custom data and annotations can be shown using BRIG, making it a versatile approach for visualising a range of genomic comparison data. BRIG is readily accessible to any user, as it assumes no specialist computational knowledge and will perform all required file parsing and BLAST comparisons automatically. There is a clear need for a user-friendly program that can produce genome comparisons for a large number of prokaryote genomes with an emphasis on rapidly utilising unfinished or unassembled genome data. Here we present BRIG, a cross-platform application that enables the interactive generation of comparative genomic images via a simple graphical-user interface. BRIG is freely available for all operating systems at http://sourceforge.net/projects/brig/.

Organic compounds downstream from a treated-wastewater discharge near Dallas, Texas, March 1987

USGS Publications Warehouse

Buszka, P.M.; Barber, L.B.; Schroeder, M.P.; Becker, L.D.

1994-01-01

Comparison of instantaneous flux values of selected organic compounds in water from downstream sites indicates: (1) the formation of chloroform in the stream following the discharge of the treated effluent, and that (2) instream biodegradation may be decreasing concentrations of linear alkylbenzene compounds in water. The relative persistence of many of the selected organic compounds in Rowlett Creek downstream from the municipal wastewater-treatment plant indicates that they could be transported into Lake Ray Hubbard, a source of municipal water supply.

The Revision Decision: Is Change Always Good? A Comparison of CELF-R and CELF-3 Test Scores in Children with Language Impairment, Focal Brain Damage, and Typical Development

ERIC Educational Resources Information Center

Ballantyne, Angela O.; Spilkin, Amy M.; Trauner, Doris A.

2007-01-01

Purpose: The Clinical Evaluation of Language Fundamentals (CELF) is a widely used, comprehensive test battery that assesses language in school-age children and adolescents. The CELF-R (E. Semel, E. H. Wiig, & W. Secord, 1987) was updated to the CELF-3 (E. Semel, E. H. Wiig, & W. A. Secord, 1995) in 1995. The goal of the present study was to…

Air Force Health Study. An Epidemiologic Investigation of Health Effects in Air Force Personnel Following Exposure to Herbicides. Volume 2

DTIC Science & Technology

1991-03-01

association of nasal and nasopharyngeal cancer to chlorophenol exposure (risk ratio, 6.7) was also detected (30), but other specifically focused...published) Selected Cancers Study (SCS) of the3 U.S. CDC focused more specifically on the incidence in Vietnam veterans of the NTIL, STS. HD, nasal ...Comparison had verified STS (fibrous histiocytoma and fibrosarcoma , respectively). The Ranch Hand was not part of the 1987 study because he died; the

[Stapler reconstruction after total gastrectomy contrasted with manual anastomosis].

PubMed

Gullà, P; Serafini, S; Micheletti, M; Gullà, N; Tristaino, B

1989-09-15

A personal series (1985-1987) of 22 cases of total gastrectomy for cancer is analysed, a comparison being made between 11 cases treated with manual anastomosis and 11 reconstructed using a stapler. The advantages and disadvantages of the various techniques are examined and although no substantial difference is noted between the two reconstructive modalities, at least as regards morbidity and mortality, stress is laid on the unquestionable advantages of mechanical staplers. These are essentially speed of execution, suture perfection and excellent long-term results.

Isolation and characterization of novel waterfowl microsatellite loci: Cross-species comparisons and research applications

USGS Publications Warehouse

Fields, R.L.; Scribner, Kim T.

1997-01-01

Waterfowl constitute an ecologically diverse group which are the subject of extensive research (e.g. see reviews in Batt et al. 1992), and are intensively managed (Nichols et al.1995). Genetic studies utilizing allozyme electrophoresis and mitochondrial (mt)DNA have provided valuable information on waterfowl ecology and evolutionary history (Cooke & Buckley 1987). However, highly variable molecular genetic markers (e.g. multilocus minisatellites; Triggs et al. 1992) have not generally been identified for this group.

Epidemic and sporadic hepatitis E virus transmission in West Kalimantan (Borneo), Indonesia.

PubMed

Corwin, A; Putri, M P; Winarno, J; Lubis, I; Suparmanto, S; Sumardiati, A; Laras, K; Tan, R; Master, J; Warner, G; Wignall, F S; Graham, R; Hyams, K C

1997-07-01

A cross-sectional survey was conducted in West Kalimantan (Borneo), Indonesia to geographically profile hepatitis E virus (HEV) prevalence in the riverine areas recognized as the foci of epidemic HEV transmission in 1987. Additionally, a contiguous, although distinct, population with no identifiable historical exposure to epidemic HEV was surveyed downstream for comparative purposes. Eight hundred eighty-five sera were assayed by enzyme immunoabsorbent assay for anti-HEV IgG and anti-hepatitis A virus (HAV) IgG markers. A very high percent (90%) of both the outbreak and comparison populations was anti-HAV IgG positive by the age of nine years. In contrast, the prevalence of anti-HEV IgG in the outbreak area (50%) was significantly higher than in the comparison area (23%) (P < 0.0001). In both the outbreak and comparison areas, anti-HEV IgG prevalence increased with age ( < 0.0001), except for the group > or = 50 years of age. The prevalence (53%) of antibody to HEV in the population > or = seven years of age from the outbreak area (alive during the actual 1987 outbreak) was significantly (P < 0.0001) greater than among the children < seven years of age (born after the outbreak) (15%). However, anti-HEV IgG prevalence among the population from the comparison area did not differ significantly between the > or = seven- (23%) and < seven- (20%) year-old age groups. The percentage of anti-HEV IgG-positive individuals among males (47%) from the outbreak area was lower (P < 0.05) compared with females (55%). While overall usage of river water for drinking purposes was not universal, dependence on river water as a primary source was significantly higher (P < 0.001) in households from the outbreak area (60%) compared with the comparison area (30%). This study indicates persistence of an anti-HEV IgG response in a large percentage of the population seven years after an epidemic of HEV infections. Also, the relatively high prevalence (15%) of anti-HEV in children < seven years of age from the outbreak area reflects continuing, sporadic infections.

Time-resolved seismic tomography at the EGS geothermal reservoir of Soultz-Sous-Forêts (France) during hydraulic stimulations. A comparison between different injection tests

NASA Astrophysics Data System (ADS)

Dorbath, C.; Calo, M.; Cornet, F.; Frogneux, M.

2011-12-01

One major goal of monitoring seismicity accompanying hydraulic fracturing of a reservoir is to recover the seismic velocity field in and around the geothermal site. Several studies have shown that the 4D (time dependent) seismic tomographies are very useful to illustrate and study the temporal variation of the seismic velocities conditioned by injected fluids. However, only an appropriate separation of the data in subsets and a reliable tomographic method allow studying representative variations of the seismic velocities during and after the injection periods. We present here new 4D seismic tomographies performed using datasets regarding some stimulation tests performed at the Enhanced Geothermal System (EGS) site of Soultz-sous-Forêts (Alsace, France). The data used were recorded during the stimulation tests occurred in 2000, 2003 and 2004 that involved the wells GPK2, GPK3 and GPK4. For each set of events, the subsetting of the data was performed by taking into account the injection parameters of the stimulation tests (namely the injected flow rate and the wellhead pressure). The velocity models have been obtained using the Double-Difference tomographic method (Zhang and Thurber 2003) and further improved with the post-processing WAM technique (Calo' et al., 2009, 2011). This technique resulted very powerful because combines high resolution and reliablity of the seismic velocity fields calculated even with small datasets. In this work we show the complete sequence of the time-lapse tomographies and their variations in time and between different stimulation tests.

Stromatolite- and coated-grain-bearing carbonate rocks of the western Brooks Range: A section in Geologic studies in Alaska by the U.S. Geological Survey during 1987

USGS Publications Warehouse

Dumoulin, Julie A.

1988-01-01

Carbonate rocks characterized by locally abundant stromatolites and coated grains have been found at several localities in the Baird Mountains and Ambler River quadrangles (fig. 1). These rocks are part of a belt of metasedimentary and metaigneous rocks that constitutes the southwestern flank of the Brooks Range; all are included in the parautochthon (Schwatka sequence) of Mayfield and others (1983). The rocks have been deformed and metamorphosed to blueschist and greenschist facies, but primary textures and sedimentary structures are locally well preserved.

International Space Station (ISS) Environmental Control and Life Support System Status: 2003-2004

NASA Technical Reports Server (NTRS)

Williams, David E.; Gentry, Gregory

2004-01-01

The International Space Station (ISS) Environmental Control and Life Support (ECLS) system includes regenerative and non-regenerative technologies that provide the basic life support functions to support the crew, while maintaining a safe and habitable shirtsleeve environment. This paper provides a summary of the U.S. ECLS system activities over the past year, covering the period of time between April 2003 and March 2004. The ISS continued permanent crew operations, with the start of Phase 3 of the ISS Assembly Sequence. Work continued on the Phase 3 pressurized elements and the continued manufacturing and testing of the regenerative ECLS equipment.

Multigene molecular phylogenetics reveals true morels (Morchella) are especially species-rich in China

USDA-ARS?s Scientific Manuscript database

The phylogenetic diversity of true morels (Morchella) in China was estimated by initially analyzing nuclear ribosomal internal transcribed spacer (ITS) rDNA sequences from 361 specimens collected in 21 provinces during the 2003-2011 growing seasons, together with six collections obtained on loan fro...

21 CFR 172.785 - Listeria-specific bacteriophage preparation.

Code of Federal Regulations, 2013 CFR

2013-04-01

... preparation. The additive may be safely used as an antimicrobial agent specific for Listeria monocytogenes (L... 725.421(d). No sequences derived from genes encoding bacterial 16S ribosomal RNA are present in the..., as determined by the “Method to Determine Microbial Contamination,” dated July 11, 2003, and printed...

21 CFR 172.785 - Listeria-specific bacteriophage preparation.

Code of Federal Regulations, 2011 CFR

2011-04-01

... preparation. The additive may be safely used as an antimicrobial agent specific for Listeria monocytogenes (L... 725.421(d). No sequences derived from genes encoding bacterial 16S ribosomal RNA are present in the..., as determined by the “Method to Determine Microbial Contamination,” dated July 11, 2003, and printed...

21 CFR 172.785 - Listeria-specific bacteriophage preparation.

Code of Federal Regulations, 2014 CFR

2014-04-01

... used as an antimicrobial agent specific for Listeria monocytogenes (L. monocytogenes) in accordance... 725.421(d). No sequences derived from genes encoding bacterial 16S ribosomal RNA are present in the..., as determined by the “Method to Determine Microbial Contamination,” dated July 11, 2003, and printed...

21 CFR 172.785 - Listeria-specific bacteriophage preparation.

Code of Federal Regulations, 2012 CFR

2012-04-01

... preparation. The additive may be safely used as an antimicrobial agent specific for Listeria monocytogenes (L... 725.421(d). No sequences derived from genes encoding bacterial 16S ribosomal RNA are present in the..., as determined by the “Method to Determine Microbial Contamination,” dated July 11, 2003, and printed...

Economic Costs Attributable to Smoking in China: Update and an 8-year Comparison, 2000–2008

PubMed Central

Yang, Lian; Sung, Hai-Yen; Mao, Zhengzhong; Hu, Teh-wei; Rao, Keqin

2013-01-01

Objective To estimate the health-related economic costs attributable to smoking in China for persons aged 35 and older in 2003 and in 2008 and to compare these costs with the respective results from 2000. Methods A prevalence-based, disease-specific approach was used to estimate smoking-attributable direct and indirect economic costs. The primary data source was the 2003 and 2008 China National Health Services Survey, which contains individual participant’s smoking status, healthcare utilization, and expenditures. Results The total economic cost of smoking in China amounted to $17.1 billion in 2003 and $28.9 billion in 2008 (both measured in 2008 constant US dollars). Direct smoking-attributable healthcare costs in 2003 and 2008 were $4.2 billion and $6.2 billion, respectively. Indirect economic costs in 2003 and 2008 were $12.9 billion and $22.7 billion, respectively. Compared to 2000, the direct costs of smoking rose by 72% in 2003 and 154% in 2008, while the indirect costs of smoking rose by 170% in 2003 and 376% in 2008. Conclusion The economic burden of cigarette smoking has increased substantially in China during the past decade and is expected to continue to increase as the national economy and the price of healthcare services grow. Stronger intervention measures against smoking should be taken without delay to reduce the health and financial losses caused by smoking. PMID:21339491

Evolution of infectious hematopoietic necrosis virus (IHNV), a fish rhabdovirus, in Europe over 20 years: implications for control.

PubMed

Enzmann, Peter-Joachim; Castric, Jeannette; Bovo, Giuseppe; Thiery, Richard; Fichtner, Dieter; Schütze, Heike; Wahli, Thomas

2010-02-24

The fish pathogenic rhabdovirus infectious hematopoietic necrosis virus (IHNV) causes substantial losses in European aquaculture. IHNV was first detected in Europe in 1987 and has since undergone considerable spread. Phylogenetic analyses of the full G-gene sequences of 73 isolates obtained from 4 countries in Europe (France, n = 18; Italy, 9; Switzerland, 4; Germany, 42) enable determination of the evolution of the virus in Europe since the first detection, and identification of characteristic changes within the G-genes of European strains. Further, the database allows us to analyse the pathways of distribution in Europe over time. The results suggest that in most of the recent cases, spread of IHNV was related to trade of infected fish. The data further demonstrate that knowledge of the sequence is required to determine the source of infections in farms.

A 10-Year Retrospective Comparison of Two Target Sequences, REP-529 and B1, for Toxoplasma gondii Detection by Quantitative PCR

PubMed Central

Belaz, Sorya; Gangneux, Jean-Pierre; Dupretz, Peggy; Guiguen, Claude

2015-01-01

This study aimed to evaluate the repeated sequence REP-529 compared to that of the B1 gene in the molecular diagnosis of toxoplasmosis by quantitative PCR (qPCR) in routine diagnosis. Over a 10-year period (2003 to 2013), all patients prospectively diagnosed with a positive REP-529 qPCR result for toxoplasmosis were included. All DNA samples (76 samples from 56 patients) were simultaneously tested using the two qPCR methods (REP-529 and B1). The mean cycle threshold (CT) obtained with the B1 qPCR was significantly higher (+4.71 cycles) than that obtained with REP-529 qPCR (P < 0.0001). Thirty-one out of 69 extracts (45.6%) positive with REP-529 qPCR were not amplified with the B1 qPCR (relative sensitivity of 54.4% compared to that with REP-529), yielding false-negative results with 15/28 placenta, 5 cord blood, 2 amniotic fluid, 4 cerebrospinal fluid, 1 aqueous humor, 2 lymph node puncture, and 1 abortion product sample. This defect in sensitivity would have left 20/56 patients undiagnosed, distributed as follows: 12/40 congenital toxoplasmosis, 4/5 cerebral toxoplasmosis, 2/8 patients with retinochoroiditis, and 2 patients with chronic lymphadenopathy. This poor performance of B1 qPCR might be related to low parasite loads, since the mean Toxoplasma quantification in extracts with B1 false-negative results was 0.4 parasite/reaction. These results clearly show the superiority of the REP-529 sequence in the diagnosis of toxoplasmosis by PCR and suggest that this target should be adopted as part of the standardization of the PCR assay. PMID:25653416

A 10-year retrospective comparison of two target sequences, REP-529 and B1, for Toxoplasma gondii detection by quantitative PCR.

PubMed

Belaz, Sorya; Gangneux, Jean-Pierre; Dupretz, Peggy; Guiguen, Claude; Robert-Gangneux, Florence

2015-04-01

This study aimed to evaluate the repeated sequence REP-529 compared to that of the B1 gene in the molecular diagnosis of toxoplasmosis by quantitative PCR (qPCR) in routine diagnosis. Over a 10-year period (2003 to 2013), all patients prospectively diagnosed with a positive REP-529 qPCR result for toxoplasmosis were included. All DNA samples (76 samples from 56 patients) were simultaneously tested using the two qPCR methods (REP-529 and B1). The mean cycle threshold (CT) obtained with the B1 qPCR was significantly higher (+4.71 cycles) than that obtained with REP-529 qPCR (P<0.0001). Thirty-one out of 69 extracts (45.6%) positive with REP-529 qPCR were not amplified with the B1 qPCR (relative sensitivity of 54.4% compared to that with REP-529), yielding false-negative results with 15/28 placenta, 5 cord blood, 2 amniotic fluid, 4 cerebrospinal fluid, 1 aqueous humor, 2 lymph node puncture, and 1 abortion product sample. This defect in sensitivity would have left 20/56 patients undiagnosed, distributed as follows: 12/40 congenital toxoplasmosis, 4/5 cerebral toxoplasmosis, 2/8 patients with retinochoroiditis, and 2 patients with chronic lymphadenopathy. This poor performance of B1 qPCR might be related to low parasite loads, since the mean Toxoplasma quantification in extracts with B1 false-negative results was 0.4 parasite/reaction. These results clearly show the superiority of the REP-529 sequence in the diagnosis of toxoplasmosis by PCR and suggest that this target should be adopted as part of the standardization of the PCR assay. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Genetic Variants of Anaplasma phagocytophilum Infecting Dogs in Western Washington State

PubMed Central

Poitout, Florence M.; Shinozaki, Joanne K.; Stockwell, Patrick J.; Holland, Cynthia J.; Shukla, Sanjay K.

2005-01-01

Eight dogs from western Washington State suspected of being infected with Anaplasma phagocytophilum because of the finding of morulae in peripheral blood neutrophils were studied for determination of the etiologic agent of disease. All cases were diagnosed between April 2003 and April 2004. Six of the eight dogs had no travel history during the 6 months prior to presentation. Two dogs had traveled within the Northwest United States and Canada. Fever, lethargy, and anorexia were the most common clinical signs in the dogs. Lymphopenia, thrombocytopenia, and an elevated activity of alkaline phosphatase in the serum were the most common laboratory findings. All dogs tested during the acute phase of clinical signs were seropositive for A. phagocytophilum antibodies but negative for Ehrlichia canis antibodies. PCR amplification and direct sequencing of portions of the 16S rRNA gene from the whole blood of all seven dogs that were tested yielded A. phagocytophilum after a comparison to bacterial sequences available in the GenBank database. Five genetic variants were identified based on one or two nucleotide differences in the 16S rRNA gene sequences at nucleotide positions 54, 84, 86, and 120. Individual dogs were infected with more than one variant. Treatment with doxycycline or tetracycline resulted in a rapid resolution of clinical signs. The occurrence of canine granulocytic anaplasmosis in western Washington State suggests that A. phagocytophilum infection should be considered in differential diagnoses of dogs presenting with lethargy, anorexia, fever, and lameness, particularly in the context of lymphopenia, thrombocytopenia, and increased serum alkaline phosphatase. The zoonotic importance of A. phagocytophilum should support an increase in surveillance for horses and people residing in this area. PMID:15695682

The Role of Eolian Sediment in the Preservation of Archeologic Sites Along the Colorado River Corridor in Grand Canyon National Park, Arizona

USGS Publications Warehouse

Draut, Amy E.; Rubin, David M.

2008-01-01

Since the closure of Glen Canyon Dam in 1963, the natural hydrologic and sedimentary systems along the Colorado River in the Grand Canyon reach have changed substantially (see, for example, Andrews, 1986; Johnson and Carothers, 1987; Webb and others, 1999b; Rubin and others, 2002; Topping and others, 2003; Wright and others, 2005; Hazel and others, 2006b). The dam has reduced the fluvial sediment supply at the upstream boundary of Grand Canyon National Park by about 95 percent. Regulation of river discharge by dam operations has important implications for the storage and redistribution of sediment in the Colorado River corridor. In the absence of floods, sediment is not deposited at elevations that regularly received sediment before dam closure. Riparian vegetation has colonized areas at lower elevations than in predam time when annual floods removed young vegetation (Turner and Karpiscak, 1980). Together, these factors have caused a systemwide decrease in the size and number of subaerially exposed fluvial sand deposits since the 1960s, punctuated by episodic aggradation during the exceptional high-flow intervals in 1983-84, 1996, and 2004 and by sediment input from occasional tributary floods (Beus and others, 1985; Schmidt and Graf, 1987; Kearsley and others, 1994; Hazel and others, 1999; Schmidt and others, 2004; Wright and others, 2005). When the Bureau of Reclamation sponsored the creation of the Glen Canyon Environmental Studies (GCES) research initiative in 1982, research objectives included physical and biologic resources, whereas the effects of dam operations on cultural resources were not addressed (Fairley and others, 1994; Fairley, 2003). In the early 1980s, it was widely believed that because few archeologic sites were preserved within the river's annual-flood zone, cultural features would not be greatly affected by dam operations. Recent studies, however, indicate that alterations in the flow and sediment load of the Colorado River by Glen Canyon Dam operations may affect archeologic sites within the river corridor, even above the annual flood limit (Hereford and others, 1993, Yeatts, 1996, 1997; Thompson and Potochnik, 2000; Draut and others, 2005). (The annual-flood zone is defined here by the mean annual predam flood of 2,410 m3/s; the 'predam flood limit', the highest elevation at which fluvial deposits are present locally, was approximately equivalent to a rare, major flood of 8,500 m3/s; Topping and others, 2003.) Of about 500 archeologic sites documented between Glen Canyon Dam and Separation Canyon (255 river miles), more than 330 are considered to be within the area of potential effect (APE) of dam operations (Fairley and others, 1994; Neal and others, 2000; Fairley, 2005). The APE was designated by the National Park Service (NPS) to include the area below the peak stage of the 1884 flood; though previously believed to have reached 8,490 m3/s, this flood was shown by Topping and others (2003) to have peaked at 5,940 m3/s. Archeologic research and monitoring in Grand Canyon National Park focus increasingly on the potential effects of Glen Canyon Dam operations on the landscape in which these sites exist. Many archeologic sites in or on sedimentary deposits are being eroded, owing to eolian deflation and gully incision (Leap and others, 2000; Neal and others, 2000; Fairley, 2003, 2005). Hereford and others (1993) first suggested that gully incision of sedimentary deposits, and the base level to which small drainage systems respond, were linked to dam operations; they hypothesized that pronounced arroyo incision, which occurs during rainfall runoff, was caused by lowering of the effective base level at the mouths of ephemeral drainages to meet the new postdam elevation of high-flow sediment deposition, about 3 to 4 m below the lowest predam alluvial terraces. Thompson and Potochnik (2000) modified that hypothesis to include the restorative effects of fluvial deposition in the mouths of gullies and ar

An improved host-vector system for Candida maltosa using a gene isolated from its genome that complements the his5 mutation of Saccharomyces cerevisiae.

PubMed

Hikiji, T; Ohkuma, M; Takagi, M; Yano, K

1989-10-01

The host-vector system of an n-alkane-assimilating-yeast, Candida maltosa, which we previously constructed using an autonomously replicating sequence (ARS) region isolated from the genome of this yeast, utilizes C. maltosa J288 (leu2-) as a host. As this host had a serious growth defect on n-alkane, we developed an improved host-vector system using C. maltosa CH1 (his-) as host. The vectors were constructed with the Candida ARS region and a DNA fragment isolated from the genome of C. maltosa. Since this DNA fragment could complement histidine auxotrophy of both C. maltosa CH1 and S. cerevisiae (his5-), we termed the gene contained in this DNA fragment C-HIS5. The vectors were characterized in terms of transformation frequency and stability, and the nucleotide sequence of C-HIS5 was determined. The deduced amino acid sequence (389 residues) shared 51% homology with that of HIS5 of S. cerevisiae (384 residues; Nishiwaki et al. 1987).

Mesobiotus philippinicus sp. nov., the first limnoterrestrial tardigrade from the Philippines.

PubMed

Mapalo, Marc A; Stec, Daniel; Mirano-Bascos, Denise; Michalczyk, Łukasz

2016-06-20

The limnoterrestrial tardigrade fauna of the Philippines is completely unknown. In this paper, we describe the first ever limnoterrestrial water bear species from this southeast Asian country, Mesobiotus philippinicus sp. nov., found in a moss sample collected in Quezon City. Apart from morphometrics and imaging in light microscopy, we also analysed the new species under scanning electron microscope and sequenced four DNA markers differing in mutation rates, three nuclear (18S rRNA, 28S rRNA, and ITS-2) and one mitochondrial (COI). This allowed not only a detailed description but also provided barcodes to aid future species identification. The new species belongs to the harmsworthi group and is most similar to M. diffusus (Binda & Pilato, 1987), M. pseudocoronatus (Pilato et al., 2006), M. montanus (Murray, 1910) and M. mottai (Binda & Pilato, 1994), but differs from these species by whorled egg processes and dimensions of some morphometric traits. The 28S rRNA, ITS-2 and COI sequences presented in this paper are the first published DNA sequences for the genus Mesobiotus.

Molecular characterization of infectious bursal disease viruses from Pakistan.

PubMed

Shabbir, Muhammad Zubair; Ali, Muhammad; Abbas, Muhammad; Chaudhry, Umer Naveed; Zia-Ur-Rehman; Munir, Muhammad

2016-07-01

Since the first report of infectious bursal disease in Pakistan in 1987, outbreaks have been common even in vaccinated flocks. Despite appropriate administration of vaccines, concerns arise if the circulating strains are different from the ones used in the vaccine. Here, we sequenced the hypervariable region (HVR) of the VP2 gene of circulating strains of infectious bursal disease virus (IBDV) originating from outbreaks (n = 4) in broiler flocks in Pakistan. Nucleotide sequencing followed by phylogeny and deduced amino acid sequence analysis showed the circulating strains to be very virulent (vv) and identified characteristic residues at position 222 (A), 242 (I), 256 (I), 294 (I) and 299 (S). In addition, a substitution at positions 221 (Q→H) was found to be exclusive to Pakistani strains in our analysis, although a larger dataset is required to confirm this finding. Compared to vaccine strains that are commonly used in Pakistan, substitution mutations were found at key amino acid positions in VP2 that may be responsible for potential changes in neutralization epitopes and vaccine failure.

Information on a Major New Initiative: Mapping and Sequencing the Human Genome (1986 DOE Memorandum)

DOE R&D Accomplishments Database

DeLisi, Charles (Associate Director, Health and Environmental Research, DOE Office of Energy Research)

1986-05-06

In the history of the Human Genome Program, Dr. Charles DeLisi and Dr. Alvin Trivelpiece of the Department of Energy (DOE) were instrumental in moving the seeds of the program forward. This May 1986 memo from DeLisi to Trivelpiece, Director of DOE's Office of Energy Research, documents this fact. Following the March 1986 Santa Fe workshop on the subject of mapping and sequencing the human genome, DeLisi's memo outlines workshop conclusions, explains the relevance of this project to DOE and the importance of the Department's laboratories and capabilities, notes the critical experience of DOE in managing projects of this scale and potential magnitude, and recognizes the fact that the project will impact biomedical science in ways which could not be fully anticipated at the time. Subsequently, program guidance was further sought from the DOE Health Effects Research Advisory Committee (HERAC) and the April 1987 HERAC report recommended that DOE and the nation commit to a large, multidisciplinary, scientific and technological undertaking to map and sequence the human genome.

Overweight and obesity in rural girls from Poland: changes between 1987 and 2001.

PubMed

Chrzanowska, Maria; Łaska-Mierzejewska, Teresa; Suder, Agnieszka

2013-03-01

Several studies have documented increased prevalence of overweight and obesity in inhabitants of rural regions, but determinants of their prevalence are complex and not always in one direction. The aim of this study was to estimate both the prevalence and extent of overweight and obesity among rural girls in Poland between 1987 and 2001, as well as to assess differentiation of the phenomenon between regions of different social structures. The data come from two series of cross-sectional studies; the first in 1987 included 7764 girls, and the second in 2001 included 9431 girls aged 9-18. Body mass index (according to the International Obesity Task Force, IOTF) and the EOW index (extent of overweight), which shows by what mean BMI value the overweight boundaries are exceeded, were calculated. Overweight and obesity prevalences in the whole sample, were, respectively, 14.9% and 2.7% in 1987 and 15.5% and 2.5% in 2001, but significant differentiation in the direction of the changes was observed between the examined regions. In one of them, characterized by sudden, mass and long-term unemployment, there was a considerable decrease in overweight and obesity prevalence, whereas in a relatively wealthier region no changes were observed during the 14-year period. Two other regions with a relatively low standard of living and low incomes and education status presented a significant increase in overweight and obesity prevalence. The EOW index increased from 1.9 to 2.1 in the whole examined sample, and it also confirmed significant differences in expansion of overweight and obesity between the examined regions. The complex character of political and socioeconomic changes in Poland during the 1990 s has resulted in two-directional changes in biological measures of living conditions. The analysis of the whole sample led to different results in comparison to separate analyses of each of the examined regions.

A Long Data Record (1979-2003) of Stratospheric Ozone Derived from TOMS Cloud Slicing: Comparison with SAGE and Implications for Ozone Recovery

NASA Technical Reports Server (NTRS)

Ziemke, Jerry R.; Chandra, Sushil; Bhartia, Pawan K.

2004-01-01

It is generally recognized that Stratospheric Aerosols and Gas Experiment (SAGE) stratospheric ozone data have become a standard long-record reference field for comparison with other stratospheric ozone measurements. This study demonstrates that stratospheric column ozone (SCO) derived from total ozone mapping spectrometer (TOMS) Cloud Slicing may be used to supplement SAGE data as a stand-alone long- record reference field in the tropics extending to middle and high latitudes over the Pacific. Comparisons of SAGE I1 version 6.2 SCO and TOMS version 8 Cloud Slicing SCO for 1984-2003 exhibit remarkable agreement in monthly ensemble means to within 1-3 DU (1 - 1.5% of SCO) despite being independently-calibrated measurements. An important component of our study is to incorporate these column ozone measurements to investigate long-term trends for the period 1979-2003. Our study includes Solar Backscatter Ultraviolet (SBW) version 8 measurements of upper stratospheric column ozone (i.e., zero to 32 hPa column ozone) to characterize seasonal cycles and seasonal trends in this region, as well as the lower stratosphere and troposphere when combined with TOMS SCO and total column ozone. The trend analyses suggest that most ozone reduction in the atmosphere since 1979 in mid-to-high latitudes has occurred in the Lower stratosphere below approx. 25 km. The delineation of upper and lower stratospheric column ozone indicate that trends in the upper stratosphere during the latter half of the 1979-2003 period have reduced to near zero globally, while trends in the lower stratosphere have become larger by approx. 5 DU decade%om the tropics extending to mid-latitudes in both hemispheres. For TCO, the trend analyses suggest moderate increases over the 25-year time record in the extra-tropics of both hemispheres of around 4-6 DU (Northern Hemisphere) and 6-8 DU (Southern Hemisphere).

K2 and K2*: efficient alignment-free sequence similarity measurement based on Kendall statistics.

PubMed

Lin, Jie; Adjeroh, Donald A; Jiang, Bing-Hua; Jiang, Yue

2018-05-15

Alignment-free sequence comparison methods can compute the pairwise similarity between a huge number of sequences much faster than sequence-alignment based methods. We propose a new non-parametric alignment-free sequence comparison method, called K2, based on the Kendall statistics. Comparing to the other state-of-the-art alignment-free comparison methods, K2 demonstrates competitive performance in generating the phylogenetic tree, in evaluating functionally related regulatory sequences, and in computing the edit distance (similarity/dissimilarity) between sequences. Furthermore, the K2 approach is much faster than the other methods. An improved method, K2*, is also proposed, which is able to determine the appropriate algorithmic parameter (length) automatically, without first considering different values. Comparative analysis with the state-of-the-art alignment-free sequence similarity methods demonstrates the superiority of the proposed approaches, especially with increasing sequence length, or increasing dataset sizes. The K2 and K2* approaches are implemented in the R language as a package and is freely available for open access (http://community.wvu.edu/daadjeroh/projects/K2/K2_1.0.tar.gz). yueljiang@163.com. Supplementary data are available at Bioinformatics online.

30 CFR 946.15 - Approval of Virginia regulatory program amendments.

Code of Federal Regulations, 2011 CFR

2011-07-01

...,” “coal preparation plant”. November 8, 1985 November 25, 1986 VR 480-03-19: 700 through 850; techniques... VR 480-03-19: 784.20(f)(2); 817.121(c)(2). January 16, 1987 August 17, 1987 VR 480-03-19.801.13(a)(2), .17(a). June 15, 1987, July 2, 1987 December 31, 1987 VA Code §§ 45.1-270.3:1, .4, .5:1, .6B; VR 480...

30 CFR 946.15 - Approval of Virginia regulatory program amendments.

Code of Federal Regulations, 2010 CFR

2010-07-01

...,” “coal preparation plant”. November 8, 1985 November 25, 1986 VR 480-03-19: 700 through 850; techniques... VR 480-03-19: 784.20(f)(2); 817.121(c)(2). January 16, 1987 August 17, 1987 VR 480-03-19.801.13(a)(2), .17(a). June 15, 1987, July 2, 1987 December 31, 1987 VA Code §§ 45.1-270.3:1, .4, .5:1, .6B; VR 480...

Relating Sensitivity and Criterion Effects to the Internal Mechanisms of Visual Spatial Attention

DTIC Science & Technology

1988-04-30

Hughes & Zimba , 1987; Rizzolatti, Riggio, Descola & *, .. Umilta, 1987). Further, deficits for uncued locations are a function 4. of the distance...Wilson, 1986; Rizzolatti, et. al., 1987; Hughes & Zimba , 1987, argue that this effect depends upon the use of an articulated visual field). Distance...Hughes, H. & Zimba , L. (1987) Nat,ral boundaries for the spatial spread of directed visual attention. Neuropsychologia, 25, 5-18. O Jonides, J. (1976

Thermal bioclimate in Strasbourg - the 2003 heat wave

NASA Astrophysics Data System (ADS)

Matzarakis, Andreas; de Rocco, Manuela; Najjar, Georges

2009-10-01

This case study highlights the implications of the 2003 heat wave for the city of Strasbourg, France. The urban centers of France and other European countries were particularly affected by the heat wave. In some urban areas, the mortality rate was 60% above the expected value (Institute de Veille Sanitaire, 2003). The 2003 heat wave demonstrated once again that populations in urban centers are much more affected by extreme meteorological events than people living in rural areas. The aim of this analysis is to explore differences in thermal comfort conditions of (a) the city center of Strasbourg, and (b) its hinterland. The differences in thermal conditions existing between rural and urban areas are quantified by using a bio-climatological index termed physiologically equivalent temperature (PET). This index is based on the human energy balance and builds a relevant index for the quantification of the thermal environment of humans. We calculate the PET for the years 2003 and 2004 to highlight the temporal changes in the severity of climate extremes. The spatial scope of this study is improved compared to previous works in the field through the inclusion of PET calculations for five different sites on a central place in Strasbourg (Place Kléber). The calculations are characterized by different sky view factors and are compared to the reference site, which is located in a rural area. In the rural hinterland (Entzheim), the analysis of PET indicates a strong cold thermal stress during the winter months but no significant stress in summer. In 2003, summer temperatures were sensed as warmer compared to other years, but did not reach the extreme temperatures that may cause severe heat stress. For both the rural and the urban study sites PET was higher in the summer of 2003 than in 2004, which reflects the inferior thermal conditions in the urban area during the heat wave in 2003. For the entire study period, urban and rural day-time PET reached similar maximal values. Strong differences in PET, however, were observed between the rural and urban areas at night-time. The study of PET for several study sites on a central place in the city (Place Kléber) of Strasbourg for the years 2003 and 2004 showed that the sites with a higher sky view factor present higher values than sites with a lower sky view factor. The comparison of these PET values (Place Kléber) to the results for the rural area showed that during the day and the night the rural city of Entzheim has the lowest PET. During the day, the site at Place Kléber, which is located under a tree, has the lowest PET. The comparison of PET for the years 2003 and 2004 shows that PET in 2003 was about 5 to 7 K higher.

Evidence-based orthodontics. Current statistical trends in published articles in one journal.

PubMed

Law, Scott V; Chudasama, Dipak N; Rinchuse, Donald J

2010-09-01

To ascertain the number, type, and overall usage of statistics in American Journal of Orthodontics and Dentofacial (AJODO) articles for 2008. These data were then compared to data from three previous years: 1975, 1985, and 2003. The frequency and distribution of statistics used in the AJODO original articles for 2008 were dichotomized into those using statistics and those not using statistics. Statistical procedures were then broadly divided into descriptive statistics (mean, standard deviation, range, percentage) and inferential statistics (t-test, analysis of variance). Descriptive statistics were used to make comparisons. In 1975, 1985, 2003, and 2008, AJODO published 72, 87, 134, and 141 original articles, respectively. The percentage of original articles using statistics was 43.1% in 1975, 75.9% in 1985, 94.0% in 2003, and 92.9% in 2008; original articles using statistics stayed relatively the same from 2003 to 2008, with only a small 1.1% decrease. The percentage of articles using inferential statistical analyses was 23.7% in 1975, 74.2% in 1985, 92.9% in 2003, and 84.4% in 2008. Comparing AJODO publications in 2003 and 2008, there was an 8.5% increase in the use of descriptive articles (from 7.1% to 15.6%), and there was an 8.5% decrease in articles using inferential statistics (from 92.9% to 84.4%).

Dynamics of actin evolution in dinoflagellates.

PubMed

Kim, Sunju; Bachvaroff, Tsvetan R; Handy, Sara M; Delwiche, Charles F

2011-04-01

Dinoflagellates have unique nuclei and intriguing genome characteristics with very high DNA content making complete genome sequencing difficult. In dinoflagellates, many genes are found in multicopy gene families, but the processes involved in the establishment and maintenance of these gene families are poorly understood. Understanding the dynamics of gene family evolution in dinoflagellates requires comparisons at different evolutionary scales. Studies of closely related species provide fine-scale information relative to species divergence, whereas comparisons of more distantly related species provides broad context. We selected the actin gene family as a highly expressed conserved gene previously studied in dinoflagellates. Of the 142 sequences determined in this study, 103 were from the two closely related species, Dinophysis acuminata and D. caudata, including full length and partial cDNA sequences as well as partial genomic amplicons. For these two Dinophysis species, at least three types of sequences could be identified. Most copies (79%) were relatively similar and in nucleotide trees, the sequences formed two bushy clades corresponding to the two species. In comparisons within species, only eight to ten nucleotide differences were found between these copies. The two remaining types formed clades containing sequences from both species. One type included the most similar sequences in between-species comparisons with as few as 12 nucleotide differences between species. The second type included the most divergent sequences in comparisons between and within species with up to 93 nucleotide differences between sequences. In all the sequences, most variation occurred in synonymous sites or the 5' UnTranslated Region (UTR), although there was still limited amino acid variation between most sequences. Several potential pseudogenes were found (approximately 10% of all sequences depending on species) with incomplete open reading frames due to frameshifts or early stop codons. Overall, variation in the actin gene family fits best with the "birth and death" model of evolution based on recent duplications, pseudogenes, and incomplete lineage sorting. Divergence between species was similar to variation within species, so that actin may be too conserved to be useful for phylogenetic estimation of closely related species.

Preliminary geologic map of the eastern Willapa Hills, Cowlitz, Lewis, and Wahkiakum Counties, Washington

USGS Publications Warehouse

Wells, Ray E.; Sawlan, Michael G.

2014-01-01

This digital map database and the PDF derived from the database were created from the analog geologic map: Wells, R.E. (1981), “Geologic map of the eastern Willapa Hills, Cowlitz, Lewis, and Wahkiakum Counties, Washington.” The geodatabase replicates the geologic mapping of the 1981 report with minor exceptions along water boundaries and also along the north and south map boundaries. Slight adjustments to contacts along water boundaries were made to correct differences between the topographic base map used in the 1981 compilation (analog USGS 15-minute series quadrangle maps at 1:62,500 scale) and the base map used for this digital compilation (scanned USGS 7.5-minute series quadrangle maps at 1:24,000 scale). These minor adjustments, however, did not materially alter the geologic map. No new field mapping was performed to create this digital map database, and no attempt was made to fit geologic contacts to the new 1:24,000 topographic base, except as noted above. We corrected typographical errors, formatting errors, and attribution errors (for example, the name change of Goble Volcanics to Grays River Volcanics following current State of Washington usage; Walsh and others, 1987). We also updated selected references, substituted published papers for abstracts, and cited published radiometric ages for the volcanic and plutonic rocks. The reader is referred to Magill and others (1982), Wells and Coe (1985), Walsh and others (1987), Moothart (1993), Payne (1998), Kleibacker (2001), McCutcheon (2003), Wells and others (2009), Chan and others (2012), and Wells and others (in press) for subsequent interpretations of the Willapa Hills geology.

Stratigraphic and Paleomagnetic Comparisons of Mesoproterozoic Strata and Sills from the Belt Basin, NW Montana, USA, and NW Anabar Shield, Russia: Testing a Precambrian Plate Reconstruction

NASA Astrophysics Data System (ADS)

Sears, J. W.; Pavlov, V.; Veselovskiy, R.; Khudoley, A.

2008-12-01

Mesoproterozoic sedimentary strata and mafic sills overlie Archean and Paleoproterozoic basement rocks with profound unconformity in NW Montana and along the NW margin of the Anabar Shield in northern Siberia. The two localities plot adjacent to one another on a Precambrian plate reconstruction proposed by Sears and Price (2003) that places the NE margin of the Siberian craton against the SW margin of the North American craton. The plate reconstruction predicts that these strata occupied contiguous parts of an intracratonic basin prior to late Neoproterozoic breakup of Rodinia. Here we show that the Mesoproterozoic stratigraphic sequences, sedimentary structures, and lithologies of the NW Anabar margin closely match the Neihart, Chamberlain, and Newland formations of the Little Belt Mountains of Montana. They may predate opening of the Belt Supergroup rift basin at ca. 1500 Ma, when a major mafic magmatic episode occurred in both regions. Preliminary paleomagnetic data from the Siberian section will be compared with the Laurentian APWP to evaluate the reconstruction.

Cellodextrin Utilization by Bifidobacterium breve UCC2003▿ †

PubMed Central

Pokusaeva, Karina; O'Connell-Motherway, Mary; Zomer, Aldert; MacSharry, John; Fitzgerald, Gerald F.; van Sinderen, Douwe

2011-01-01

Cellodextrins, the incomplete hydrolysis products from insoluble cellulose, are accessible as a carbon source to certain members of the human gut microbiota, such as Bifidobacterium breve UCC2003. Transcription of the cldEFGC gene cluster of B. breve UCC2003 was shown to be induced upon growth on cellodextrins, implicating this cluster in the metabolism of these sugars. Phenotypic analysis of a B. breve UCC2003::cldE insertion mutant confirmed that the cld gene cluster is exclusively required for cellodextrin utilization by this commensal. Moreover, our results suggest that transcription of the cld cluster is controlled by a LacI-type regulator encoded by cldR, located immediately upstream of cldE. Gel mobility shift assays using purified CldRHis (produced by the incorporation of a His12-encoding sequence into the 3′ end of the cldC gene) indicate that the cldEFGC promoter is subject to negative control by CldRHis, which binds to two inverted repeats. Analysis by high-performance anion-exchange chromatography with pulsed amperometric detection (HPAEC-PAD) of medium samples obtained during growth of B. breve UCC2003 on a mixture of cellodextrins revealed its ability to utilize cellobiose, cellotriose, cellotetraose, and cellopentaose, with cellotriose apparently representing the preferred substrate. The cldC gene of the cld operon of B. breve UCC2003 is, to the best of our knowledge, the first described bifidobacterial β-glucosidase exhibiting hydrolytic activity toward various cellodextrins. PMID:21216899

Gopherus Agassizii (Desert Tortoise). Predation/Mountain Lions (Pre-Print)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paul D. Greger and Philip A. Medica

2009-01-01

During a long-term study on tortoise growth within 3 fenced 9-ha enclosures in Rock Valley, Nevada Test Site (NTS), Nye County, Nevada, USA, tortoises have been captured annually since 1964 (Medica et al. 1975. Copeia 1975:630-643; Turner et al. 1987. Copeia 1987:974-979). Between early August and mid October 2003 we observed a significant mortality event. The Rock Valley enclosures were constructed of 6 x 6 mm mesh 1.2 m wide hardware cloth, buried 0.3 m in the soil with deflective flashing on both sides on the top to restrict the movement of small mammals and lizards from entering or leavingmore » the enclosures (Rundel and Gibson 1996, Ecological communities and process in a Mojave Desert ecosystem: Rock Valley, Nevada, Cambridge University Press, Great Britain. 369 pp.). On August 6, 2003, the carcass of an adult female Desert Tortoise No.1411 (carapace length 234 mm when alive) was collected while adult male tortoise No.4414 (carapace length 269 mm) was observed alive and in good health on the same day. Subsequently the carcass of No.4414 was found on October 16, 2003. Between October 16-17, 2003, the remains of 6 (5 adult and 1 juvenile) Desert Tortoises were found, some within each of the 3 enclosures in Rock Valley. A seventh adult tortoise was found on September 26, 2006, its death also attributed to the 2003 mortality event based upon the forensic evidence. Each of the 7 adult Desert Tortoises had the central portion of their carapace broken open approximately to the dorsal portion of the marginal scutes while the plastron was still intact (Figure 1A). Adjacent to 7 of the 8 remains we located numerous bone fragments including parts of the carapace and limbs as well as dried intestines in a nearby Range Rhatany (Krameria parvifolia) shrub. The significance of the frequent use of this shrub is puzzling. Three of the Desert Tortoise shell remains possessed distinctive intercanine punctures measuring 55-60 mm center to center indicating that this was an adult sized Mountain Lion. By comparison, a 2 year old male Mountain Lion salvaged on NTS had an upper intercanine bite width of 45 mm, and a 6 month old kitten measured 35mm respectively. The Mountain Lion (Puma concolor) is the only predator that exists in southern Nevada that could possibly have a bite with a gap between its upper canine teeth that large (Murmann et al. 2006. J. Forensic Sci. 51:846-860). The appearance of the shell remains in Figure 1A is similar to that depicting Jaguar (Panthera onca) predation, on the Amazonian Tortoise (Geochelone denticulata) as illustrated by Emmons (1989. J. Herpetol. 23:311-314) with the majority of the carapace broken open and the plastron still intact. Predation of Desert Tortoises by Mountain Lions was also documented in 1993 in southern Arizona (Little Shipp Wash Plot), where 7 of 8 carcasses found were attributed to Mountain Lion predation (Averill-Murray et al. 2002. In. T.R.Van Devender [ed.], The Sonoran Desert Tortoise: Natural History, Biology, and Conservation, pp.109-134. University of Arizona Press and Arizona-Sonora Desert Museum, Tucson, Arizona). Similarly, predation by a Mountain Lion has been reported on the Argentine Tortoise (Chelonoidis chilensis) in Argentina (Acosta et al. 2004. Herpetol. Review 35:53-54), and a Mountain Lion kitten was observed to kill and consume a portion of the carapace of a Texas Tortoise (Gopherus berlandieri) in west Texas (Adams et al. 2006. Southwestern Nat. 51:581-581). Over the past 45 years this Desert Tortoise population has been monitored yearly, with no prior evidence of predation to tortoises within the fenced enclosures. On several occasions other predators such as Bobcats (Lynx rufus) have been observed within the study enclosures for as long as a week. Evidence of Kit Fox (Vulpes macrotus) sign has been observed on numerous occasions, and a Spotted Skunk (Spilogale putorius) and Longtail Weasels (Mustela frenata) have been captured and released (B.G. Maza, pers. comm.; Medica 1990. Great Basin Nat. 50:83-84), while Coyotes (Canis latrans) were never observed within the fenced enclosures. Prior to this predation event in Rock Valley, 17 Desert Tortoises were alive between 2000 and 2002, only 7 were known to be alive in 2004, while 2 tortoises have not been seen since 2002. Predation studies of Mountain Lions indicate that these events may be an example of a learned behavior of individual animals developing a preference for a prey (Logan and Sweanor 2001, Desert Puma: Evolutionary ecology and conservation of an enduring carnivore. Hornocker Wildlife Institute, Island Press, Washington. 463 pp.; Creeden and Graham 1997, Desert Bighorn Council Transactions. p. 37-43), or the plight of a large predator locating an available source of food while passing through low elevation Mojave Desert habitat in late summer or early fall.« less

Mycobacterium tuberculosis Rv1987 induces Th2 immune responses and enhances Mycobacterium smegmatis survival in mice.

PubMed

Sha, Shanshan; Shi, Xiaoxia; Deng, Guoying; Chen, Lina; Xin, Yi; Ma, Yufang

2017-04-01

Mycobacterium tuberculosis can interfere with host immune response and escape clearance through its specific antigens. M. tuberculosis Rv1987 encoded by region of difference (RD)-2 gene is a secretory protein with immunogenic potency. Here, we investigated the impact of Rv1987 on host cytokine responses and T cell polarization in mouse aerosol model. A recombinant M. smegmatis mc 2 155 strain that overexpressed Rv1987 protein (named MS1987) was constructed and used to infect C57BL/6 mice. The mc 2 155 harbored the empty vector (named MSVec) was as a control. The results showed that MS1987 challenged mice promoted Th2-biased cytokine responses with lower secretion of IFN-γ but higher production of IL-4 and Rv1987-specific IgG antibody compared to MSVec infected mice. Neutrophilic inflammation and high bacterial burden were observed in the lung tissues of MS1987 infected mice probably own to the failed Th1 cell immunity. Besides, subcutaneous injection of Rv1987 protein could mediate the Th1 cytokine responses caused by M. bovis BCG in mice. These results indicated that M. tuberculosis Rv1987 protein could modulate host immune response towards Th2 profile, which probably contributed to the immune evasion of bacteria from host elimination. Copyright © 2017 Elsevier GmbH. All rights reserved.

The Sit-and-Wait Hypothesis in Bacterial Pathogens: A Theoretical Study of Durability and Virulence.

PubMed

Wang, Liang; Liu, Zhanzhong; Dai, Shiyun; Yan, Jiawei; Wise, Michael J

2017-01-01

The intriguing sit-and-wait hypothesis predicts that bacterial durability in the external environment is positively correlated with their virulence. Since its first proposal in 1987, the hypothesis has been spurring debates in terms of its validity in the field of bacterial virulence. As a special case of the vector-borne transmission versus virulence tradeoff, where vector is now replaced by environmental longevity, there are only sporadic studies over the last three decades showing that environmental durability is possibly linked with virulence. However, no systematic study of these works is currently available and epidemiological analysis has not been updated for the sit-and-wait hypothesis since the publication of Walther and Ewald's (2004) review. In this article, we put experimental evidence, epidemiological data and theoretical analysis together to support the sit-and-wait hypothesis. According to the epidemiological data in terms of gain and loss of virulence (+/-) and durability (+/-) phenotypes, we classify bacteria into four groups, which are: sit-and-wait pathogens (++), vector-borne pathogens (+-), obligate-intracellular bacteria (--), and free-living bacteria (-+). After that, we dive into the abundant bacterial proteomic data with the assistance of bioinformatics techniques in order to investigate the two factors at molecular level thanks to the fast development of high-throughput sequencing technology. Sequences of durability-related genes sourced from Gene Ontology and UniProt databases and virulence factors collected from Virulence Factor Database are used to search 20 corresponding bacterial proteomes in batch mode for homologous sequences via the HMMER software package. Statistical analysis only identified a modest, and not statistically significant correlation between mortality and survival time for eight non-vector-borne bacteria with sit-and-wait potentials. Meanwhile, through between-group comparisons, bacteria with higher host-mortality are significantly more durable in the external environment. The results of bioinformatics analysis correspond well with epidemiological data, that is, non-vector-borne pathogens with sit-and-wait potentials have higher number of virulence and durability genes compared with other bacterial groups. However, the conclusions are constrained by the relatively small bacterial sample size and non-standardized experimental data.

The Sit-and-Wait Hypothesis in Bacterial Pathogens: A Theoretical Study of Durability and Virulence

PubMed Central

Wang, Liang; Liu, Zhanzhong; Dai, Shiyun; Yan, Jiawei; Wise, Michael J.

2017-01-01

The intriguing sit-and-wait hypothesis predicts that bacterial durability in the external environment is positively correlated with their virulence. Since its first proposal in 1987, the hypothesis has been spurring debates in terms of its validity in the field of bacterial virulence. As a special case of the vector-borne transmission versus virulence tradeoff, where vector is now replaced by environmental longevity, there are only sporadic studies over the last three decades showing that environmental durability is possibly linked with virulence. However, no systematic study of these works is currently available and epidemiological analysis has not been updated for the sit-and-wait hypothesis since the publication of Walther and Ewald’s (2004) review. In this article, we put experimental evidence, epidemiological data and theoretical analysis together to support the sit-and-wait hypothesis. According to the epidemiological data in terms of gain and loss of virulence (+/-) and durability (+/-) phenotypes, we classify bacteria into four groups, which are: sit-and-wait pathogens (++), vector-borne pathogens (+-), obligate-intracellular bacteria (--), and free-living bacteria (-+). After that, we dive into the abundant bacterial proteomic data with the assistance of bioinformatics techniques in order to investigate the two factors at molecular level thanks to the fast development of high-throughput sequencing technology. Sequences of durability-related genes sourced from Gene Ontology and UniProt databases and virulence factors collected from Virulence Factor Database are used to search 20 corresponding bacterial proteomes in batch mode for homologous sequences via the HMMER software package. Statistical analysis only identified a modest, and not statistically significant correlation between mortality and survival time for eight non-vector-borne bacteria with sit-and-wait potentials. Meanwhile, through between-group comparisons, bacteria with higher host-mortality are significantly more durable in the external environment. The results of bioinformatics analysis correspond well with epidemiological data, that is, non-vector-borne pathogens with sit-and-wait potentials have higher number of virulence and durability genes compared with other bacterial groups. However, the conclusions are constrained by the relatively small bacterial sample size and non-standardized experimental data. PMID:29209284

14 CFR 198.7 - Amount of insurance coverage available.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 14 Aeronautics and Space 3 2012-01-01 2012-01-01 false Amount of insurance coverage available. 198.7 Section 198.7 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) WAR RISK INSURANCE AVIATION INSURANCE § 198.7 Amount of insurance coverage available. (a) For...

14 CFR 198.7 - Amount of insurance coverage available.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 14 Aeronautics and Space 3 2013-01-01 2013-01-01 false Amount of insurance coverage available. 198.7 Section 198.7 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) WAR RISK INSURANCE AVIATION INSURANCE § 198.7 Amount of insurance coverage available. (a) For...

Comparison of Atmospheric Deposition Among Three Sites In and Near the Flat Tops Wilderness Area, Colorado, 2003-2005

USGS Publications Warehouse

Ingersoll, George P.; Campbell, Donald H.; Mast, M. Alisa

2008-01-01

Atmospheric deposition was monitored for ammonium, nitrate, and sulfate concentrations and precipitation amounts in the Flat Tops Wilderness Area of northwestern Colorado at Ned Wilson Lake beginning in 1984 to detect changes that might result from future emissions associated with development of oil-shale resources in northwestern Colorado. Renewed monitoring, by the U.S. Geological Survey, in cooperation with Rio Blanco County, to determine the current status of atmospheric deposition has been ongoing since 2003 at Ned Wilson Lake. Two new monitoring sites were located near Ripple Creek Pass near the Flat Tops Wilderness area and about 12 kilometers north of Ned Wilson Lake because access to the area near Ripple Creek Pass is less difficult and less expensive, particularly in winter and spring. The intent of this study was to establish whether the new deposition data being collected near Ripple Creek Pass, near the northern boundary of the Flat Tops Wilderness Area, would be representative of deposition at sensitive sites within the wilderness such as Ned Wilson Lake and to compare more current (2003 through 2005) deposition data with earlier data (1984 through 1991). At Ned Wilson Lake, bulk ammonium and nitrate concentrations collected from 1984 through 1991 were similar to those from 2003 through 2005. However, in the same comparison significant differences in sulfate concentrations were observed, indicating a decrease consistent with other regional findings for similar periods. Comparison of concentrations of constituents at two bulk-deposition sites located at Ned Wilson Lake (NWLB) and near Ripple Creek Pass (RCPB) showed only one significant difference (p = 0.05) with the winter bulk nitrate concentrations for NWLB significantly lower than winter concentrations from RCPB. Another comparison of concentrations of constituents between the bulk deposition site RCPB and a wet deposition site 100 meters away (RCPW) showed no significant differences for concentrations of ammonium, nitrate, and sulfate for both the winter and summer comparisons. While results indicate many similarities in concentrations of constituents and in seasonal variability in those concentrations, they are based on a short period of study. Precipitation amounts from RCPB were less than the amounts collected at NWLB, and precipitation amounts from RCPW were less than the amounts collected at RCPB. Although RCPB may not be a perfect replacement site for NWLB, it may be similar enough to represent atmospheric deposition in areas of the Flat Tops Wilderness of northwestern Colorado.

Parental and Medical Leave Act of 1987. Hearings on S.249 To Grant Employees Parental and Temporary Purposes, before the Subcommittee on Children, Family, Drugs and Alcoholism of the Committee on Labor and Human Resources. United States Senate, One Hundredth Congress, First Session. Part 2 (Los Angeles, California, July 20, 1987; Chicago, Illinois, September 14, 1987; Atlanta, Georgia, October 13, 1987; Washington, D.C., October 29, 1987).

ERIC Educational Resources Information Center

Congress of the U.S., Washington, DC. Senate Committee on Labor and Human Resources.

Hearings were held in California, Illinois, Georgia, and Washington, D.C., to receive testimony concerning the Parental and Medical Leave Act of 1987, a bill intended to promote the economic security of many families by providing job-protected leave for parents upon the birth, adoption, or serious illness of a child, and temporary medical leave…

Reported energy intake by weight status, day and estimated energy requirement among adults: NHANES 2003-2008

USDA-ARS?s Scientific Manuscript database

Objective: To describe energy intake reporting by gender, weight status, and interview sequence and to compare reported intakes to the Estimated Energy Requirement at different levels of physical activity. Methods: Energy intake was self-reported by 24-hour recall on two occasions (day 1 and day 2)...

Typing of Lymphogranuloma Venereum Chlamydia trachomatis Strains

PubMed Central

Christerson, Linus; de Vries, Henry J.C.; de Barbeyrac, Bertille; Gaydos, Charlotte A.; Henrich, Birgit; Hoffmann, Steen; Schachter, Julius; Thorvaldsen, Johannes; Vall-Mayans, Martí; Klint, Markus; Morré, Servaas A.

2010-01-01

We analyzed by multilocus sequence typing 77 lymphogranuloma venereum Chlamydia trachomatis strains from men who have sex with men in Europe and the United States. Specimens from an outbreak in 2003 in Europe were monoclonal. In contrast, several strains were in the United States in the 1980s, including a variant from Europe. PMID:21029543

NIH Health Disparities Strategic Plan, Fiscal Years 2004-2008

ERIC Educational Resources Information Center

National Human Genome Research Institute, 2008

2008-01-01

The National Human Genome Research Institute (NHGRI) led the National Institutes of Health's (NIH) contribution to the International Human Genome Project, whose primary goal was the sequencing of the human genome. This project was successfully completed in April 2003. Now, the NHGRI's mission is focused on a broad range of studies aimed at…

A Successful Creative Process: The Role of Passion and Emotions

ERIC Educational Resources Information Center

St-Louis, Ariane C.; Vallerand, Robert J.

2015-01-01

The creative process refers a sequence of thoughts and actions leading to a novel, adaptive production (Lubart, 2000). It demands love, time, and devotion; therefore, creators are passionate toward their creative work. The Dualistic Model of Passion (Vallerand et al., 2003) defines passion as a strong inclination for a self-defining activity that…

Phylogenetic analysis of West Nile virus, Nuevo Leon State, Mexico.

PubMed

Blitvich, Bradley J; Fernández-Salas, Ildefonso; Contreras-Cordero, Juan F; Loroño-Pino, María A; Marlenee, Nicole L; Díaz, Francisco J; González-Rojas, José I; Obregón-Martínez, Nelson; Chiu-García, Jorge A; Black, William C; Beaty, Barry J

2004-07-01

West Nile virus RNA was detected in brain tissue from a horse that died in June 2003 in Nuevo Leon State, Mexico. Nucleotide sequencing and phylogenetic analysis of the premembrane and envelope genes showed that the virus was most closely related to West Nile virus isolates collected in Texas in 2002.

Phylogenetic Analysis of West Nile Virus, Nuevo Leon State, Mexico

PubMed Central

Blitvich, Bradley J.; Fernández-Salas, Ildefonso; Contreras-Cordero, Juan F.; Loroño-Pino, María A.; Marlenee, Nicole L.; Díaz, Francisco J.; González-Rojas, José I.; Obregón-Martínez, Nelson; Chiu-García, Jorge A.; Black, William C.

2004-01-01

West Nile virus RNA was detected in brain tissue from a horse that died in June 2003 in Nuevo Leon State, Mexico. Nucleotide sequencing and phylogenetic analysis of the premembrane and envelope genes showed that the virus was most closely related to West Nile virus isolates collected in Texas in 2002. PMID:15324558

The World Health Organization Global Programme on AIDS proposal for standardization of HIV sequence nomenclature. WHO Network for HIV Isolation and Characterization.

PubMed

Korber, B T; Osmanov, S; Esparza, J; Myers, G

1994-11-01

The World Health Organization Global Programme on AIDS (WHO/GPA) is conducting a large-scale collaborative study of human immunodeficiency virus type 1 (HIV-1) variation, based in four potential vaccine-trial site countries: Brazil, Rwanda, Thailand, and Uganda. Through the course of this study, it was crucial to keep track of certain attributes of the samples from which the viral nucleotide sequences were derived (e.g., country of origin and viral culture characterization), so that meaningful sequence comparisons could be made. Here we describe a system developed in the context of the WHO/GPA study that summarizes such critical attributes by representing them as standardized characters directly incorporated into sequence names. This nomenclature allows linkage of clinical, phenotypic, and geographic information with molecular data. We propose that other investigators involved in human immunodeficiency virus (HIV) nucleotide sequencing efforts adopt a similar standardized sequence nomenclature to facilitate cross-study sequence comparison. HIV sequence data are being generated at an ever-increasing rate; directly coupled to this increase is our deepening understanding of biological parameters that influence or result from sequence variability. A standardized sequence nomenclature that includes relevant biological information would enable researchers to better utilize the growing body of sequence data, and enhance their ability to interpret the biological implications of their own data through facilitating comparisons with previously published work.

Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses.

PubMed

Ventura, Marco; Canchaya, Carlos; Zink, Ralf; Fitzgerald, Gerald F; van Sinderen, Douwe

2004-10-01

The bacterial heat shock response is characterized by the elevated expression of a number of chaperone complexes, including the GroEL and GroES proteins. The groES and groEL genes are highly conserved among eubacteria and are typically arranged as an operon. Genome analysis of Bifidobacterium breve UCC 2003 revealed that the groES and groEL genes are located in different chromosomal regions. The heat inducibility of the groEL and groES genes of B. breve UCC 2003 was verified by slot blot analysis. Northern blot analyses showed that the cspA gene is cotranscribed with the groEL gene, while the groES gene is transcribed as a monocistronic unit. The transcription initiation sites of these two mRNAs were determined by primer extension. Sequence and transcriptional analyses of the region flanking the groEL and groES genes of various bifidobacteria revealed similar groEL-cspA and groES gene units, suggesting a novel genetic organization of these chaperones. Phylogenetic analysis of the available bifidobacterial groES and groEL genes suggested that these genes evolved differently. Discrepancies in the phylogenetic positioning of groES-based trees make this gene an unreliable molecular marker. On the other hand, the bifidobacterial groEL gene sequences can be used as an alternative to current methods for tracing Bifidobacterium species, particularly because they allow a high level of discrimination between closely related species of this genus.

Markov model plus k-word distributions: a synergy that produces novel statistical measures for sequence comparison.

PubMed

Dai, Qi; Yang, Yanchun; Wang, Tianming

2008-10-15

Many proposed statistical measures can efficiently compare biological sequences to further infer their structures, functions and evolutionary information. They are related in spirit because all the ideas for sequence comparison try to use the information on the k-word distributions, Markov model or both. Motivated by adding k-word distributions to Markov model directly, we investigated two novel statistical measures for sequence comparison, called wre.k.r and S2.k.r. The proposed measures were tested by similarity search, evaluation on functionally related regulatory sequences and phylogenetic analysis. This offers the systematic and quantitative experimental assessment of our measures. Moreover, we compared our achievements with these based on alignment or alignment-free. We grouped our experiments into two sets. The first one, performed via ROC (receiver operating curve) analysis, aims at assessing the intrinsic ability of our statistical measures to search for similar sequences from a database and discriminate functionally related regulatory sequences from unrelated sequences. The second one aims at assessing how well our statistical measure is used for phylogenetic analysis. The experimental assessment demonstrates that our similarity measures intending to incorporate k-word distributions into Markov model are more efficient.

Search-based optimization

NASA Technical Reports Server (NTRS)

Wheeler, Ward C.

2003-01-01

The problem of determining the minimum cost hypothetical ancestral sequences for a given cladogram is known to be NP-complete (Wang and Jiang, 1994). Traditionally, point estimations of hypothetical ancestral sequences have been used to gain heuristic, upper bounds on cladogram cost. These include procedures with such diverse approaches as non-additive optimization of multiple sequence alignment, direct optimization (Wheeler, 1996), and fixed-state character optimization (Wheeler, 1999). A method is proposed here which, by extending fixed-state character optimization, replaces the estimation process with a search. This form of optimization examines a diversity of potential state solutions for cost-efficient hypothetical ancestral sequences and can result in greatly more parsimonious cladograms. Additionally, such an approach can be applied to other NP-complete phylogenetic optimization problems such as genomic break-point analysis. c2003 The Willi Hennig Society. Published by Elsevier Science (USA). All rights reserved.

[Bladder tumor lethality. Results in the autonomous community of Rioja between 1975-1991].

PubMed

Fernández Fernández, A; Gil Fabra, J; Fernández Ruíz, M; Angulo Castellanos, M G; Blanco Martín, E; Otero Mauricio, G

1998-01-01

Between 1975-1991, a total of 557 cases of bladder carcinoma were identified in the Autonomous Community of La Rioja (CAR) which were followed up to December 1994. The overall lethality was 21.9%. 492 cases with 22.35% lethality were identified in males. In females, however, there was 65 cases with 18.46% lethality. The comparison of males and females lethality resulted in p = 0.525. Lethality between cases diagnosed within each 5-year period analyzed is: 1975-1981: 177 cases, lethality 23.72%. 1982-1986: 168 cases, lethality 30.95%. 1987-1991: 212 cases, lethality 13.20%. Between the first and the second 5-year periods, p = 0.132; between the first and third 5-year periods p = 0.007 and between the second and third 5-year periods p < 0.000. Bladder tumours accounts in CAR for a 22.35% lethality. Lethality is higher in males that in females but the difference is not statistically significant. In the last 5-year period assessed, 1987-1991, a reduction of lethality from bladder neoplasms has been documented.

A spectroscopic and voltammetric study of the pH-dependent Cu(II) coordination to the peptide GGGTH: relevance to the fifth Cu(II) site in the prion protein.

PubMed

Hureau, Christelle; Charlet, Laurent; Dorlet, Pierre; Gonnet, Florence; Spadini, Lorenzo; Anxolabéhère-Mallart, Elodie; Girerd, Jean-Jacques

2006-09-01

The GGGTH sequence has been proposed to be the minimal sequence involved in the binding of a fifth Cu(II) ion in addition to the octarepeat region of the prion protein (PrP) which binds four Cu(II) ions. Coordination of Cu(II) by the N- and C-protected Ac-GGGTH-NH(2) pentapeptide (P(5)) was investigated by using potentiometric titration, electrospray ionization mass spectrometry, UV-vis spectroscopy, electron paramagnetic resonance (EPR) spectroscopy and cyclic voltammetry experiments. Four different Cu(II) complexes were identified and characterized as a function of pH. The Cu(II) binding mode switches from NO(3) to N(4) for pH values ranging from 6.0 to 10.0. Quasi-reversible reduction of the [Cu(II)(P(5))H(-2)] complex formed at pH 6.7 occurs at E (1/2)=0.04 V versus Ag/AgCl, whereas reversible oxidation of the [Cu(II)(P(5))H(-3)](-) complex formed at pH 10.0 occurs at E (1/2)=0.66 V versus Ag/AgCl. Comparison of our EPR data with those of the rSHaPrP(90-231) (Burns et al. in Biochemistry 42:6794-6803, 2003) strongly suggests an N(3)O binding mode at physiological pH for the fifth Cu(II) site in the protein.

Statistical complexity measure of pseudorandom bit generators

NASA Astrophysics Data System (ADS)

González, C. M.; Larrondo, H. A.; Rosso, O. A.

2005-08-01

Pseudorandom number generators (PRNG) are extensively used in Monte Carlo simulations, gambling machines and cryptography as substitutes of ideal random number generators (RNG). Each application imposes different statistical requirements to PRNGs. As L’Ecuyer clearly states “the main goal for Monte Carlo methods is to reproduce the statistical properties on which these methods are based whereas for gambling machines and cryptology, observing the sequence of output values for some time should provide no practical advantage for predicting the forthcoming numbers better than by just guessing at random”. In accordance with different applications several statistical test suites have been developed to analyze the sequences generated by PRNGs. In a recent paper a new statistical complexity measure [Phys. Lett. A 311 (2003) 126] has been defined. Here we propose this measure, as a randomness quantifier of a PRNGs. The test is applied to three very well known and widely tested PRNGs available in the literature. All of them are based on mathematical algorithms. Another PRNGs based on Lorenz 3D chaotic dynamical system is also analyzed. PRNGs based on chaos may be considered as a model for physical noise sources and important new results are recently reported. All the design steps of this PRNG are described, and each stage increase the PRNG randomness using different strategies. It is shown that the MPR statistical complexity measure is capable to quantify this randomness improvement. The PRNG based on the chaotic 3D Lorenz dynamical system is also evaluated using traditional digital signal processing tools for comparison.

Phrase boundary effects on the temporal kinematics of sequential tongue tip consonants1

PubMed Central

Byrd, Dani; Lee, Sungbok; Campos-Astorkiza, Rebeka

2008-01-01

This study evaluates the effects of phrase boundaries on the intra- and intergestural kinematic characteristics of blended gestures, i.e., overlapping gestures produced with a single articulator. The sequences examined are the juncture geminate [d(#)d], the sequence [d(#)z], and, for comparison, the singleton tongue tip gesture in [d(#)b]. This allows the investigation of the process of gestural aggregation [Munhall, K. G., and Löfqvist, A. (1992). “Gestural aggregation in speech: laryngeal gestures,” J. Phonetics 20, 93–110] and the manner in which it is affected by prosodic structure. Juncture geminates are predicted to be affected by prosodic boundaries in the same way as other gestures; that is, they should display prosodic lengthening and lesser overlap across a boundary. Articulatory prosodic lengthening is also investigated using a signal alignment method of the functional data analysis framework [Ramsay, J. O., and Silverman, B. W. (2005). Functional Data Analysis, 2nd ed. (Springer-Verlag, New York)]. This provides the ability to examine a time warping function that characterizes relative timing difference (i.e., lagging or advancing) of a test signal with respect to a given reference, thus offering a way of illuminating local nonlinear deformations at work in prosodic lengthening. These findings are discussed in light of the π-gesture framework of Byrd and Saltzman [(2003) “The elastic phrase: Modeling the dynamics of boundary-adjacent lengthening,” J. Phonetics 31, 149–180]. PMID:18537396

A confidence interval analysis of sampling effort, sequencing depth, and taxonomic resolution of fungal community ecology in the era of high-throughput sequencing.

PubMed

Oono, Ryoko

2017-01-01

High-throughput sequencing technology has helped microbial community ecologists explore ecological and evolutionary patterns at unprecedented scales. The benefits of a large sample size still typically outweigh that of greater sequencing depths per sample for accurate estimations of ecological inferences. However, excluding or not sequencing rare taxa may mislead the answers to the questions 'how and why are communities different?' This study evaluates the confidence intervals of ecological inferences from high-throughput sequencing data of foliar fungal endophytes as case studies through a range of sampling efforts, sequencing depths, and taxonomic resolutions to understand how technical and analytical practices may affect our interpretations. Increasing sampling size reliably decreased confidence intervals across multiple community comparisons. However, the effects of sequencing depths on confidence intervals depended on how rare taxa influenced the dissimilarity estimates among communities and did not significantly decrease confidence intervals for all community comparisons. A comparison of simulated communities under random drift suggests that sequencing depths are important in estimating dissimilarities between microbial communities under neutral selective processes. Confidence interval analyses reveal important biases as well as biological trends in microbial community studies that otherwise may be ignored when communities are only compared for statistically significant differences.

A confidence interval analysis of sampling effort, sequencing depth, and taxonomic resolution of fungal community ecology in the era of high-throughput sequencing

PubMed Central

2017-01-01

High-throughput sequencing technology has helped microbial community ecologists explore ecological and evolutionary patterns at unprecedented scales. The benefits of a large sample size still typically outweigh that of greater sequencing depths per sample for accurate estimations of ecological inferences. However, excluding or not sequencing rare taxa may mislead the answers to the questions ‘how and why are communities different?’ This study evaluates the confidence intervals of ecological inferences from high-throughput sequencing data of foliar fungal endophytes as case studies through a range of sampling efforts, sequencing depths, and taxonomic resolutions to understand how technical and analytical practices may affect our interpretations. Increasing sampling size reliably decreased confidence intervals across multiple community comparisons. However, the effects of sequencing depths on confidence intervals depended on how rare taxa influenced the dissimilarity estimates among communities and did not significantly decrease confidence intervals for all community comparisons. A comparison of simulated communities under random drift suggests that sequencing depths are important in estimating dissimilarities between microbial communities under neutral selective processes. Confidence interval analyses reveal important biases as well as biological trends in microbial community studies that otherwise may be ignored when communities are only compared for statistically significant differences. PMID:29253889

Genetic characterization and molecular epidemiology of foot-and-mouth disease viruses isolated from Afghanistan in 2003-2005.

PubMed

Schumann, Kate R; Knowles, Nick J; Davies, Paul R; Midgley, Rebecca J; Valarcher, Jean-Francois; Raoufi, Abdul Quader; McKenna, Thomas S; Hurtle, William; Burans, James P; Martin, Barbara M; Rodriguez, Luis L; Beckham, Tammy R

2008-04-01

Foot-and-mouth disease virus (FMDV) isolates collected from various geographic locations in Afghanistan between 2003 and 2005 were genetically characterized, and their phylogeny was reconstructed utilizing nucleotide sequences of the complete VP1 coding region. Three serotypes of FMDV (types A, O, and Asia 1) were identified as causing clinical disease in Afghanistan during this period. Phylogenetic analysis revealed that the type A viruses were most closely related to isolates collected in Iran during 2002-2004. This is the first published report of serotype A in Afghanistan since 1975, therefore indicating the need for inclusion of serotype A in vaccine formulations that will be used to control disease outbreaks in this country. Serotype O virus isolates were closely related to PanAsia strains, including those that originated from Bhutan and Nepal during 2003-2004. The Asia 1 viruses, collected along the northern and eastern borders of Afghanistan, were most closely related to FMDV isolates collected in Pakistan during 2003 and 2004. Data obtained from this study provide valuable information on the FMDV serotypes circulating in Afghanistan and their genetic relationship with strains causing FMD in neighboring countries.

Drug response and genetic properties of Vibrio cholerae associated with endemic cholera in north-eastern Thailand, 2003–2011

PubMed Central

Chomvarin, Chariya; Johura, Fatema-Tuz; Mannan, Shahnewaj B.; Jumroenjit, Warin; Kanoktippornchai, Boonnapa; Tangkanakul, Waraluk; Tantisuwichwong, Napaporn; Huttayananont, Sriwanna; Watanabe, Haruo; Hasan, Nur A.; Huq, Anwar; Cravioto, Alejandro; Colwell, Rita R.

2013-01-01

Cholera, caused by Vibrio cholerae, results in significant morbidity and mortality worldwide, including Thailand. Representative V. cholerae strains associated with endemic cholera (n = 32), including strains (n = 3) from surface water sources, in Khon Kaen, Thailand (2003–2011), were subjected to microbiological, molecular and phylogenetic analyses. According to phenotypic and related genetic data, all tested V. cholerae strains belonged to serogroup O1, biotype El Tor (ET), Inaba (IN) or Ogawa (OG). All of the strains were sensitive to gentamicin and ciprofloxacin, while multidrug-resistant (MDR) strains showing resistance to erythromycin, tetracycline, trimethoprim/sulfamethoxazole and ampicillin were predominant in 2007. V. cholerae strains isolated before and after 2007 were non-MDR. All except six diarrhoeal strains possessed ctxA and ctxB genes and were toxigenic altered ET, confirmed by MAMA-PCR and DNA sequencing. Year-wise data revealed that V. cholerae INET strains isolated between 2003 and 2004, plus one strain isolated in 2007, lacked the RS1 sequence (rstC) and toxin-linked cryptic plasmid (TLC)-specific genetic marker, but possessed CTXCL prophage genes ctxBCL and rstRCL. A sharp genetic transition was noted, namely the majority of V. cholerae strains in 2007 and all in 2010 and 2011 were not repressor genotype rstRCL but instead were rstRET, and all ctx+ strains possessed RS1 and TLC-specific genetic markers. DNA sequencing data revealed that strains isolated since 2007 had a mutation in the tcpA gene at amino acid position 64 (N→S). Four clonal types, mostly of environmental origin, including subtypes, reflected genetic diversity, while distinct signatures were observed for clonally related, altered ET from Thailand, Vietnam and Bangladesh, confirmed by distinct subclustering patterns observed in the PFGE (NotI)-based dendrogram, suggesting that endemic cholera is caused by V. cholerae indigenous to Khon Kaen. PMID:23319310

Detection of MEF-1 laboratory reference strain of poliovirus type 2 in children with poliomyelitis in India in 2002 & 2003.

PubMed

Deshpande, J M; Nadkarni, S S; Siddiqui, Z A

2003-12-01

Significant progress has been made towards eradication of poliomyelitis in India. Surveillance for acute flaccid paralysis (AFP) has reached high standards. Among the 3 types of polioviruses, type 2 had been eliminated in India and eradicated globally as of October 1999. However, we isolated wild poliovirus type 2 from a small number of polio cases in northern India in 2000 and again during December 2002 to February 2003. Using molecular tools the origin, of the wild type 2 poliovirus was investigated. Polioviruses isolated from stool samples collected from patients with AFP were differentiated as wild virus or Sabin vaccine-like by ELISA and probe hybridization assays. Complete VP1 gene nucleotide sequences of the wild type 2 poliovirus isolates were determined by reverse transcriptase polymerase chain reaction (RT-PCR), followed by cycle sequencing. VP1 nucleotide sequences were compared with those of wild type 2 polioviruses that were indigenous in India in the past as well as prototype/laboratory strains and the GenBank database. Wild poliovirus type 2 was detected in stool samples from 6 patients with AFP in western Uttar Pradesh and 1 in Gujarat. In addition, the virus was isolated from one healthy contact child and from environmental sewage sample in Moradabad where three of these patients were reported. These isolates were identified as genetically closely related to laboratory reference strain MEF-1. Molecular characterization of the isolates confirmed that there was no evidence of extensive person-to-person transmission of the virus in the community. Laboratory reference strain (MEF-1) of poliovirus type 2 caused paralytic poliomyelitis in 10 patients in September 2000 and November 2002 to February 2003. The origin of the virus was some laboratory as yet not identified. This episode highlights the urgent need for stringent containment of wild poliovirus containing materials in the laboratories across the country in order to prevent recurrence of such incidents.

Phylo-VISTA: Interactive visualization of multiple DNA sequence alignments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shah, Nameeta; Couronne, Olivier; Pennacchio, Len A.

The power of multi-sequence comparison for biological discovery is well established. The need for new capabilities to visualize and compare cross-species alignment data is intensified by the growing number of genomic sequence datasets being generated for an ever-increasing number of organisms. To be efficient these visualization algorithms must support the ability to accommodate consistently a wide range of evolutionary distances in a comparison framework based upon phylogenetic relationships. Results: We have developed Phylo-VISTA, an interactive tool for analyzing multiple alignments by visualizing a similarity measure for multiple DNA sequences. The complexity of visual presentation is effectively organized using a frameworkmore » based upon interspecies phylogenetic relationships. The phylogenetic organization supports rapid, user-guided interspecies comparison. To aid in navigation through large sequence datasets, Phylo-VISTA leverages concepts from VISTA that provide a user with the ability to select and view data at varying resolutions. The combination of multiresolution data visualization and analysis, combined with the phylogenetic framework for interspecies comparison, produces a highly flexible and powerful tool for visual data analysis of multiple sequence alignments. Availability: Phylo-VISTA is available at http://www-gsd.lbl. gov/phylovista. It requires an Internet browser with Java Plugin 1.4.2 and it is integrated into the global alignment program LAGAN at http://lagan.stanford.edu« less

Critical slowing down associated with regime shifts in the US housing market

NASA Astrophysics Data System (ADS)

Tan, James Peng Lung; Cheong, Siew Siew Ann

2014-02-01

Complex systems are described by a large number of variables with strong and nonlinear interactions. Such systems frequently undergo regime shifts. Combining insights from bifurcation theory in nonlinear dynamics and the theory of critical transitions in statistical physics, we know that critical slowing down and critical fluctuations occur close to such regime shifts. In this paper, we show how universal precursors expected from such critical transitions can be used to forecast regime shifts in the US housing market. In the housing permit, volume of homes sold and percentage of homes sold for gain data, we detected strong early warning signals associated with a sequence of coupled regime shifts, starting from a Subprime Mortgage Loans transition in 2003-2004 and ending with the Subprime Crisis in 2007-2008. Weaker signals of critical slowing down were also detected in the US housing market data during the 1997-1998 Asian Financial Crisis and the 2000-2001 Technology Bubble Crisis. Backed by various macroeconomic data, we propose a scenario whereby hot money flowing back into the US during the Asian Financial Crisis fueled the Technology Bubble. When the Technology Bubble collapsed in 2000-2001, the hot money then flowed into the US housing market, triggering the Subprime Mortgage Loans transition in 2003-2004 and an ensuing sequence of transitions. We showed how this sequence of couple transitions unfolded in space and in time over the whole of US.

Sequence information signal processor

DOEpatents

Peterson, John C.; Chow, Edward T.; Waterman, Michael S.; Hunkapillar, Timothy J.

1999-01-01

An electronic circuit is used to compare two sequences, such as genetic sequences, to determine which alignment of the sequences produces the greatest similarity. The circuit includes a linear array of series-connected processors, each of which stores a single element from one of the sequences and compares that element with each successive element in the other sequence. For each comparison, the processor generates a scoring parameter that indicates which segment ending at those two elements produces the greatest degree of similarity between the sequences. The processor uses the scoring parameter to generate a similar scoring parameter for a comparison between the stored element and the next successive element from the other sequence. The processor also delivers the scoring parameter to the next processor in the array for use in generating a similar scoring parameter for another pair of elements. The electronic circuit determines which processor and alignment of the sequences produce the scoring parameter with the highest value.

Breaking the computational barriers of pairwise genome comparison.

PubMed

Torreno, Oscar; Trelles, Oswaldo

2015-08-11

Conventional pairwise sequence comparison software algorithms are being used to process much larger datasets than they were originally designed for. This can result in processing bottlenecks that limit software capabilities or prevent full use of the available hardware resources. Overcoming the barriers that limit the efficient computational analysis of large biological sequence datasets by retrofitting existing algorithms or by creating new applications represents a major challenge for the bioinformatics community. We have developed C libraries for pairwise sequence comparison within diverse architectures, ranging from commodity systems to high performance and cloud computing environments. Exhaustive tests were performed using different datasets of closely- and distantly-related sequences that span from small viral genomes to large mammalian chromosomes. The tests demonstrated that our solution is capable of generating high quality results with a linear-time response and controlled memory consumption, being comparable or faster than the current state-of-the-art methods. We have addressed the problem of pairwise and all-versus-all comparison of large sequences in general, greatly increasing the limits on input data size. The approach described here is based on a modular out-of-core strategy that uses secondary storage to avoid reaching memory limits during the identification of High-scoring Segment Pairs (HSPs) between the sequences under comparison. Software engineering concepts were applied to avoid intermediate result re-calculation, to minimise the performance impact of input/output (I/O) operations and to modularise the process, thus enhancing application flexibility and extendibility. Our computationally-efficient approach allows tasks such as the massive comparison of complete genomes, evolutionary event detection, the identification of conserved synteny blocks and inter-genome distance calculations to be performed more effectively.

Late cataractogenesis in primates and lagomorphs after exposure to particulate radiations

NASA Technical Reports Server (NTRS)

Cox, A. B.; Lee, A. C.; Williams, G. R.; Lett, J. T.

1992-01-01

Results are presented from a study in which regular examinations of cataractogenic development were conducted since 1987 in monkeys that were exposed in 1969, at the age of about 2 years, to low doses of 'mixed-energy' protons (10 and 110 MeV). The results of comparisons with age-matched controls showed that the cataractogenic patterns observed in the exposed monkeys are consistent with those observed in other groups of monkeys that were exposed at similar ages in 1964 and 1965 to protons of different energies (Lett et al., 1986, 1988, 1989, and 1991). Comparisons were also made among recent results from different groups of primates and from New Zealand white rabbits that were exposed when young to Fe-56 and were monitored continuously thereafter.

The 20th anniversary of SN1987A

NASA Astrophysics Data System (ADS)

Suzuki, A.

2008-07-01

Observation of a neutrino burst from the supernova, SN1987A opened a new window of observational astronomy by neutrinos. And the history showed that the SN1987A neutrino burst observation was the vanguard of successive discoveries of neutrino properties by Super-Kamiokande, SNO, K2K, KamLAND and so on. On the occasion of the SN1987A 20th anniversary, the backstage story up to the discovery of the SN1987A neutrino bursts is summarized, tracing the Kamiokande log-note and including the IMB, LSD and Baksan data.

Biannual water-resources review, White Sands Missile Range, New Mexico, 1986 and 1987

USGS Publications Warehouse

Myers, Robert G.; Sharp, Steven C.

1989-01-01

Hydrologic data were collected at White Sands Missile Range, New Mexico in 1986 and 1987. The total groundwater withdrawal in 1986 was 565,462,500 gal and in 1987 it was 620,492,000 gal. The total groundwater withdrawal was 110,971,300 gal less in 1986 than in 1985, but 55,029,500 gal more in 1987 than in 1986. Water samples from five Post Headquarters water supply wells were collected for chemical analysis in 1986. In 1987, water samples were collected from four test wells in the Post Headquarters area for analysis of selected volatile organic compounds. Twenty-eight water samples from wells were collected for analysis of specific conductance in 1986 and 1987. (USGS)

Complete Genome Sequence of an Isolate of Bluetongue Virus Serotype 2, Demonstrating Circulation of a Western Topotype in Southern India

PubMed Central

Maan, Narender S.; Maan, Sushila; Guimera, Marc; Pullinger, Gillian; Singh, Karam Pal; Nomikou, Kyriaki; Belaganahalli, Manjunatha N.

2012-01-01

Bluetongue virus serotype 2 (IND2003/02) was isolated in Tiruneveli City, Tamil Nadu State, India, and is stored in the Orbivirus Reference Collection at the Institute for Animal Health, Pirbright, United Kingdom. The entire genome of this isolate was sequenced, showing that it is composed of a total of 19,203 bp (all 10 genome segments). This is the first report of the entire genome sequence of a western strain of BTV-2 isolated in India, indicating that this virus has been introduced and is circulating in the region. These data will aid in the development of diagnostics and molecular epidemiology studies of BTV-2 in the subcontinent. PMID:22492927

Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437T)

PubMed Central

Mavromatis, Konstantinos; Stackebrandt, Erko; Munk, Christine; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Huntemann, Marcel; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Rohde, Manfred; Gronow, Sabine; Göker, Markus; Detter, John C.; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans-Peter; Woyke, Tanja

2013-01-01

Alistipes finegoldii Rautio et al. 2003 is one of five species of Alistipes with a validly published name: family Rikenellaceae, order Bacteroidetes, class Bacteroidia, phylum Bacteroidetes. This rod-shaped and strictly anaerobic organism has been isolated mostly from human tissues. Here we describe the features of the type strain of this species, together with the complete genome sequence, and annotation. A. finegoldii is the first member of the genus Alistipes for which the complete genome sequence of its type strain is now available. The 3,734,239 bp long single replicon genome with its 3,302 protein-coding and 68 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. PMID:23961309

Complete genome sequence of Sulfurimonas autotrophica type strain (OK10T)

PubMed Central

Sikorski, Johannes; Munk, Christine; Lapidus, Alla; Ngatchou Djao, Olivier Duplex; Lucas, Susan; Glavina Del Rio, Tijana; Nolan, Matt; Tice, Hope; Han, Cliff; Cheng, Jan-Fang; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Sims, David; Meincke, Linda; Brettin, Thomas; Detter, John C.; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Rohde, Manfred; Lang, Elke; Spring, Stefan; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans-Peter

2010-01-01

Sulfurimonas autotrophica Inagaki et al. 2003 is the type species of the genus Sulfurimonas. This genus is of interest because of its significant contribution to the global sulfur cycle as it oxidizes sulfur compounds to sulfate and by its apparent habitation of deep-sea hydrothermal and marine sulfidic environments as potential ecological niche. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the second complete genome sequence of the genus Sulfurimonas and the 15th genome in the family Helicobacteraceae. The 2,153,198 bp long genome with its 2,165 protein-coding and 55 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. PMID:21304749

Structural genomics: keeping up with expanding knowledge of the protein universe.

PubMed

Grabowski, Marek; Joachimiak, Andrzej; Otwinowski, Zbyszek; Minor, Wladek

2007-06-01

Structural characterization of the protein universe is the main mission of Structural Genomics (SG) programs. However, progress in gene sequencing technology, set in motion in the 1990s, has resulted in rapid expansion of protein sequence space--a twelvefold increase in the past seven years. For the SG field, this creates new challenges and necessitates a re-assessment of its strategies. Nevertheless, despite the growth of sequence space, at present nearly half of the content of the Swiss-Prot database and over 40% of Pfam protein families can be structurally modeled based on structures determined so far, with SG projects making an increasingly significant contribution. The SG contribution of new Pfam structures nearly doubled from 27.2% in 2003 to 51.6% in 2006.

Reaction schemes visualized in network form: the syntheses of strychnine as an example.

PubMed

Proudfoot, John R

2013-05-24

Representation of synthesis sequences in a network form provides an effective method for the comparison of multiple reaction schemes and an opportunity to emphasize features such as reaction scale that are often relegated to experimental sections. An example of data formatting that allows construction of network maps in Cytoscape is presented, along with maps that illustrate the comparison of multiple reaction sequences, comparison of scaffold changes within sequences, and consolidation to highlight common key intermediates used across sequences. The 17 different synthetic routes reported for strychnine are used as an example basis set. The reaction maps presented required a significant data extraction and curation, and a standardized tabular format for reporting reaction information, if applied in a consistent way, could allow the automated combination of reaction information across different sources.

The Latest SORCE Solar Spectral Irradiance Data Release: Inter-Comparison and a First Look at TSIS SIM Measurement.

NASA Astrophysics Data System (ADS)

Beland, S.; Sandoval, L.; Vanier, B.; Elliott, J.; Harder, J. W.; Snow, M. A.; Woods, T. N.; Richard, E. C.; Pilewskie, P.

2017-12-01

The Spectral Irradiance Monitor (SIM), the SOLar STellar Irradiance Comparison Experiment (SOLSTICE), and the XUV Photometer System (XPS) instruments on board the Solar Radiation and Climate Experiment (SORCE) mission have been taking daily Solar spectral irradiance (SSI) measurements since April 2003. We present the latest data releases from these instruments, describing the improvements in the new datasets and the trends measured during Solar cycles 23 and 24. An inter-comparison of the SSI over the overlapping wavelengths for SIM and SOLSTICE is presented as well as, if the data is available, a comparison with the first light measurements from TSIS-SIM.

Pathology Observed on Cone Beam Computed Tomographic Scans: A Comparison of Prevalence and Type of Incidental Findings for Child/Adolescents and Adults

DTIC Science & Technology

2013-04-13

the radiation passed through the subject. For conventional CT, this value is called a Hounsfield unit (HU), named in the honor of Godfrey Hounsfield ...concretions and tonsilloliths. Otolaryngol Clin North Am. 1987 May;20(2):305-9. 39. Reeves TE, Mah P, McDavid WD. Deriving Hounsfield units using grey...study are those of the authors and do not reflect the official policy of the United States Air Force, the Department of Defense, or the United States

The Post-Award Costs of Contracting Out: The U.S. Navy’s Implementation of OMB Circular A-76

DTIC Science & Technology

1988-06-01

Commercial Activities (CA) Program Update, 6 April 1987. 4. Horngren , C.T. and Foster, G., Cost Accounting : A Managerial Emphasis, 6th Ed., Prentice-Hall... COSTS OF CONTRACTING OUT: THE U.S. NAVY’S IMPLEMENTATION OF OMB CIRCULAR A-76 12 PERSONAL AUTHOR( S ) Cole. Nancy S . and Cnlp Charla P 13a TYPE OF...of contracting out and identifies those costs that are either underestimated or not accounted for in the cost comparison process. Research was

CARE 3 User's Workshop

NASA Technical Reports Server (NTRS)

1988-01-01

A user's workshop for CARE 3, a reliability assessment tool designed and developed especially for the evaluation of high reliability fault tolerant digital systems, was held at NASA Langley Research Center on October 6 to 7, 1987. The main purpose of the workshop was to assess the evolutionary status of CARE 3. The activities of the workshop are documented and papers are included by user's of CARE 3 and NASA. Features and limitations of CARE 3 and comparisons to other tools are presented. The conclusions to a workshop questionaire are also discussed.

The Stability of Double Jaw Surgery: A Comparison of Rigid Fixation versus Skeletal Wire Fixation

DTIC Science & Technology

1988-08-01

intermaxillary fixation from four to six weeks to one to three days and an improved ability to place the condyle in a passive position in the glenoid fossa...versus -1.6) and the horizontal projection of B Pt. (-2.5 mm versus - 1.0 mm). No statistical analysis was performed due to the small number of patients...AV%5 ~ ’*%*~ I~ ~ ~’~ ~S ’, 160 Carlotti, Albert E., and Schendel, Stephen A. 1987. "An Analysis of Factors Influencing Stability of Surgical

Comparison of particulate lead levels for different ammunition types used with the M16 rifle. Final report, July 1987-June 1988

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoke, S.H.; Beard, A.S.; Brueggemann, E.E.

1988-07-01

Airborne lead generated during firing of conventional ammunition has lead to health concerns at indoor firing ranges. This study compares the relative amounts of airborne lead produced by the M16 rifle firing the M193 standard M16 5.56-mm conventional ammunition, the M862 5.56-mm plastic training ammunition, and the conventional caliber .22 rifle cartridge. Both breech and breech-plus-muzzle lead emissions were determined for each type of ammunition.

Alignment-free Transcriptomic and Metatranscriptomic Comparison Using Sequencing Signatures with Variable Length Markov Chains.

PubMed

Liao, Weinan; Ren, Jie; Wang, Kun; Wang, Shun; Zeng, Feng; Wang, Ying; Sun, Fengzhu

2016-11-23

The comparison between microbial sequencing data is critical to understand the dynamics of microbial communities. The alignment-based tools analyzing metagenomic datasets require reference sequences and read alignments. The available alignment-free dissimilarity approaches model the background sequences with Fixed Order Markov Chain (FOMC) yielding promising results for the comparison of microbial communities. However, in FOMC, the number of parameters grows exponentially with the increase of the order of Markov Chain (MC). Under a fixed high order of MC, the parameters might not be accurately estimated owing to the limitation of sequencing depth. In our study, we investigate an alternative to FOMC to model background sequences with the data-driven Variable Length Markov Chain (VLMC) in metatranscriptomic data. The VLMC originally designed for long sequences was extended to apply to high-throughput sequencing reads and the strategies to estimate the corresponding parameters were developed. The flexible number of parameters in VLMC avoids estimating the vast number of parameters of high-order MC under limited sequencing depth. Different from the manual selection in FOMC, VLMC determines the MC order adaptively. Several beta diversity measures based on VLMC were applied to compare the bacterial RNA-Seq and metatranscriptomic datasets. Experiments show that VLMC outperforms FOMC to model the background sequences in transcriptomic and metatranscriptomic samples. A software pipeline is available at https://d2vlmc.codeplex.com.

Comparison and quantitative verification of mapping algorithms for whole genome bisulfite sequencing

USDA-ARS?s Scientific Manuscript database

Coupling bisulfite conversion with next-generation sequencing (Bisulfite-seq) enables genome-wide measurement of DNA methylation, but poses unique challenges for mapping. However, despite a proliferation of Bisulfite-seq mapping tools, no systematic comparison of their genomic coverage and quantitat...

The Differential Expression of Calcitonin Gene Related Peptide, alpha CGRP mRNA, Choline Acetyltransferase, and Low Affinity Nerve Growth Factor Receptor in Cranial Motoneurons After Hypoglossal Nerve Injury During Postnatal Development

DTIC Science & Technology

1996-08-21

maintenance. Since the classic neurotrophic effects ofNGF are not observed when it is bound to the low affinity receptor and since the high affmity type...is not present in motoneurons after injury this may explain why the classic NGF response is not observed (Wood et aI., 1990) and suggests that perhaps...Heumann et aI., 1987; Meyer et aI., 1992; Funakoshi et aI., 1993; Friedman et aI., 1995a). This sequencing ofneurotrophic changes may be related to the

[Hygiene in endoscopy in clinic and practice 2013 in comparison with 2003--structure and process quality].

PubMed

Jager, E; Hausemann, A; Hofmann, H; Otto, U; Heudorf, U

2014-12-01

Endoscopy is an important part of modern medical diagnostics and therapy. The invasive procedures are however associated with a risk to transmit infections. Against this background the KRINKO has published the "Hygienic requirements for the reprocessing of flexible endoscopes and endoscopic accessories" in 2002 and has updated these recommendations in 2012. In 2003 and 2013 all gastroenterological facilities in Frankfurt am Main using flexible endoscopes were monitored for compliance with the recommendations. The inspections were performed after prior notice by a staff member of the health authority using a checklist which had been developed on the basis of the current KRINKO recommendations. In both years all institutions performing endoscopic procedures were visited: 2003 15 hospitals and 23 practices; 2013 14 clinics and 10 practices. In 2013 (data for 2003 in brackets) 100 % (93 %) of the hospitals and 60 % (22 %) of practices reprocessed their endoscopes by automated methods. The appropriate reprocessing and filling of water bottles for rinsing the scope channels with sterile water and the sterilisation of accessories were satisfactorily performed in 2003 and 2013 by all hospitals. However in 2013 only 90 % (2003: 74 %) of the practices correctly reprocessed water bottles and 80 % (52 %) used sterile water for filling the bottle. In 2013 100 % (2003: 57 %) of the practices correctly sterilised accessory instruments, while 2 practices used disposable, i. e., single-use materials. In 2013 all institutions performed microbiological tests according to KRINKO recommendations, while in 2003 all hospitals but only 43 % of the practices could present such tests. While the gastroenterological departments of Frankfurt hospitals already complied with the KRINKO recommendations in 2003, the inspection of several practices in 2003 had revealed considerable shortcomings in the implementation of these recommendations. Subsequently the practices have improved their hygiene management. © Georg Thieme Verlag KG Stuttgart · New York.

Use of sediment quality guidelines and related tools for the asssessment of contaminated sediments: Executive summary sooklet of a SETAC Pellston Workshop

USGS Publications Warehouse

Wenning, R. J.; Ingersoll, Christopher G.

2002-01-01

This publication summarizes the results of a Pellston Workshop sponsored by the Society of Environmental Toxicology and Chemistry (SETAC), held 17-22 August 2002 in Fairmont, Montana, USA. The full technical proceedings of the workshop will be published separately by SET AC in 2003. Previous SETAC workshops have focused on sediment ecological risk assessment (ERA) (Dickson et al. 1987; Ingersoll et al. 1997) and porewater toxicity testing (Carr and Nipper 2003). Another recent workshop addressed the application of weight-of-evidence (WOE) methods in ERA (Burton et al. 2002). These previous workshops focused on how, when, and why ERAs are needed in sediment assessments. However, more focused discussion among scientists, environmental regulators, and environmental managers is now needed to build on this previous work. Specifically, additional guidance is needed on procedures that can be used to integrate the information derived from multiple chemical and biological lines of evidence (LOE). These LOE, which are developed through the application of different assessment tools, often include the use of chemically based sediment quality guidelines (SQGs) to evaluate sediment contamination and to help practitioners in sediment assessment and management formulate risk management decisions. This workshop focused on evaluation of the scientific foundations supporting different chemically based numeric SQGs and methods to improve the integration of SQGs into different sediment quality assessment frameworks that include information derived from multiple chemical and biological LOE.

Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection.

PubMed

Ghouila, Amel; Florent, Isabelle; Guerfali, Fatma Zahra; Terrapon, Nicolas; Laouini, Dhafer; Yahia, Sadok Ben; Gascuel, Olivier; Bréhélin, Laurent

2014-01-01

Identification of protein domains is a key step for understanding protein function. Hidden Markov Models (HMMs) have proved to be a powerful tool for this task. The Pfam database notably provides a large collection of HMMs which are widely used for the annotation of proteins in sequenced organisms. This is done via sequence/HMM comparisons. However, this approach may lack sensitivity when searching for domains in divergent species. Recently, methods for HMM/HMM comparisons have been proposed and proved to be more sensitive than sequence/HMM approaches in certain cases. However, these approaches are usually not used for protein domain discovery at a genome scale, and the benefit that could be expected from their utilization for this problem has not been investigated. Using proteins of P. falciparum and L. major as examples, we investigate the extent to which HMM/HMM comparisons can identify new domain occurrences not already identified by sequence/HMM approaches. We show that although HMM/HMM comparisons are much more sensitive than sequence/HMM comparisons, they are not sufficiently accurate to be used as a standalone complement of sequence/HMM approaches at the genome scale. Hence, we propose to use domain co-occurrence--the general domain tendency to preferentially appear along with some favorite domains in the proteins--to improve the accuracy of the approach. We show that the combination of HMM/HMM comparisons and co-occurrence domain detection boosts protein annotations. At an estimated False Discovery Rate of 5%, it revealed 901 and 1098 new domains in Plasmodium and Leishmania proteins, respectively. Manual inspection of part of these predictions shows that it contains several domain families that were missing in the two organisms. All new domain occurrences have been integrated in the EuPathDomains database, along with the GO annotations that can be deduced.

Identification of Divergent Protein Domains by Combining HMM-HMM Comparisons and Co-Occurrence Detection

PubMed Central

Ghouila, Amel; Florent, Isabelle; Guerfali, Fatma Zahra; Terrapon, Nicolas; Laouini, Dhafer; Yahia, Sadok Ben; Gascuel, Olivier; Bréhélin, Laurent

2014-01-01

Identification of protein domains is a key step for understanding protein function. Hidden Markov Models (HMMs) have proved to be a powerful tool for this task. The Pfam database notably provides a large collection of HMMs which are widely used for the annotation of proteins in sequenced organisms. This is done via sequence/HMM comparisons. However, this approach may lack sensitivity when searching for domains in divergent species. Recently, methods for HMM/HMM comparisons have been proposed and proved to be more sensitive than sequence/HMM approaches in certain cases. However, these approaches are usually not used for protein domain discovery at a genome scale, and the benefit that could be expected from their utilization for this problem has not been investigated. Using proteins of P. falciparum and L. major as examples, we investigate the extent to which HMM/HMM comparisons can identify new domain occurrences not already identified by sequence/HMM approaches. We show that although HMM/HMM comparisons are much more sensitive than sequence/HMM comparisons, they are not sufficiently accurate to be used as a standalone complement of sequence/HMM approaches at the genome scale. Hence, we propose to use domain co-occurrence — the general domain tendency to preferentially appear along with some favorite domains in the proteins — to improve the accuracy of the approach. We show that the combination of HMM/HMM comparisons and co-occurrence domain detection boosts protein annotations. At an estimated False Discovery Rate of 5%, it revealed 901 and 1098 new domains in Plasmodium and Leishmania proteins, respectively. Manual inspection of part of these predictions shows that it contains several domain families that were missing in the two organisms. All new domain occurrences have been integrated in the EuPathDomains database, along with the GO annotations that can be deduced. PMID:24901648

Progressive structure-based alignment of homologous proteins: Adopting sequence comparison strategies.

PubMed

Joseph, Agnel Praveen; Srinivasan, Narayanaswamy; de Brevern, Alexandre G

2012-09-01

Comparison of multiple protein structures has a broad range of applications in the analysis of protein structure, function and evolution. Multiple structure alignment tools (MSTAs) are necessary to obtain a simultaneous comparison of a family of related folds. In this study, we have developed a method for multiple structure comparison largely based on sequence alignment techniques. A widely used Structural Alphabet named Protein Blocks (PBs) was used to transform the information on 3D protein backbone conformation as a 1D sequence string. A progressive alignment strategy similar to CLUSTALW was adopted for multiple PB sequence alignment (mulPBA). Highly similar stretches identified by the pairwise alignments are given higher weights during the alignment. The residue equivalences from PB based alignments are used to obtain a three dimensional fit of the structures followed by an iterative refinement of the structural superposition. Systematic comparisons using benchmark datasets of MSTAs underlines that the alignment quality is better than MULTIPROT, MUSTANG and the alignments in HOMSTRAD, in more than 85% of the cases. Comparison with other rigid-body and flexible MSTAs also indicate that mulPBA alignments are superior to most of the rigid-body MSTAs and highly comparable to the flexible alignment methods. Copyright © 2012 Elsevier Masson SAS. All rights reserved.

Radioactive decay of the late-time light curves of GRB-SNe

NASA Astrophysics Data System (ADS)

Misra, Kuntal; Fruchte, Andrew Steven

2018-04-01

We present the late-time Hubble Space Telescope observations of two GRB associated supernovae, GRB 030329/SN 2003dh and XRF 060218/SN 2006aj. Using the multi-color data upto ˜ 320 days after the burst, we constrain the late-time decay nature of these supernovae. The decay rates of SN 2003dh are steeper than SN 2006aj. A comparison with two other GRB supernovae, GRB 980425/SN 1998bw and the supernova associated with XRF 020903, shows that the decay rates of SN 2003dh are similar to XRF 020903 and those of SN 2006aj are similar to SN 1998bw. The late-time decay rates are steeper than the 56Co?56Fe radioactive decay rate (0.0098 mag day-1) indicating that there is some leakage of gamma-rays.

Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human

PubMed Central

Song, Huai-Dong; Tu, Chang-Chun; Zhang, Guo-Wei; Wang, Sheng-Yue; Zheng, Kui; Lei, Lian-Cheng; Chen, Qiu-Xia; Gao, Yu-Wei; Zhou, Hui-Qiong; Xiang, Hua; Zheng, Hua-Jun; Chern, Shur-Wern Wang; Cheng, Feng; Pan, Chun-Ming; Xuan, Hua; Chen, Sai-Juan; Luo, Hui-Ming; Zhou, Duan-Hua; Liu, Yu-Fei; He, Jian-Feng; Qin, Peng-Zhe; Li, Ling-Hui; Ren, Yu-Qi; Liang, Wen-Jia; Yu, Ye-Dong; Anderson, Larry; Wang, Ming; Xu, Rui-Heng; Wu, Xin-Wei; Zheng, Huan-Ying; Chen, Jin-Ding; Liang, Guodong; Gao, Yang; Liao, Ming; Fang, Ling; Jiang, Li-Yun; Li, Hui; Chen, Fang; Di, Biao; He, Li-Juan; Lin, Jin-Yan; Tong, Suxiang; Kong, Xiangang; Du, Lin; Hao, Pei; Tang, Hua; Bernini, Andrea; Yu, Xiao-Jing; Spiga, Ottavia; Guo, Zong-Ming; Pan, Hai-Yan; He, Wei-Zhong; Manuguerra, Jean-Claude; Fontanet, Arnaud; Danchin, Antoine; Niccolai, Neri; Li, Yi-Xue; Wu, Chung-I; Zhao, Guo-Ping

2005-01-01

The genomic sequences of severe acute respiratory syndrome coronaviruses from human and palm civet of the 2003/2004 outbreak in the city of Guangzhou, China, were nearly identical. Phylogenetic analysis suggested an independent viral invasion from animal to human in this new episode. Combining all existing data but excluding singletons, we identified 202 single-nucleotide variations. Among them, 17 are polymorphic in palm civets only. The ratio of nonsynonymous/synonymous nucleotide substitution in palm civets collected 1 yr apart from different geographic locations is very high, suggesting a rapid evolving process of viral proteins in civet as well, much like their adaptation in the human host in the early 2002–2003 epidemic. Major genetic variations in some critical genes, particularly the Spike gene, seemed essential for the transition from animal-to-human transmission to human-to-human transmission, which eventually caused the first severe acute respiratory syndrome outbreak of 2002/2003. PMID:15695582

Molecular Epidemiology of Influenza A/H3N2 Viruses Circulating in Mexico from 2003 to 2012

PubMed Central

Escalera-Zamudio, Marina; Nelson, Martha I.; Cobián Güemes, Ana Georgina; López-Martínez, Irma; Cruz-Ortiz, Natividad; Iguala-Vidales, Miguel; García, Elvia Rodríguez; Barrera-Badillo, Gisela; Díaz-Quiñonez, Jose Alberto; López, Susana; Arias, Carlos F.; Isa, Pavel

2014-01-01

In this work, nineteen influenza A/H3N2 viruses isolated in Mexico between 2003 and 2012 were studied. Our findings show that different human A/H3N2 viral lineages co-circulate within a same season and can also persist locally in between different influenza seasons, increasing the chance for genetic reassortment events. A novel minor cluster was also identified, named here as Korea, that circulated worldwide during 2003. Frequently, phylogenetic characterization did not correlate with the determined antigenic identity, supporting the need for the use of molecular evolutionary tools additionally to antigenic data for the surveillance and characterization of viral diversity during each flu season. This work represents the first long-term molecular epidemiology study of influenza A/H3N2 viruses in Mexico based on the complete genomic sequences and contributes to the monitoring of evolutionary trends of A/H3N2 influenza viruses within North and Central America. PMID:25075517

BLAST and FASTA similarity searching for multiple sequence alignment.

PubMed

Pearson, William R

2014-01-01

BLAST, FASTA, and other similarity searching programs seek to identify homologous proteins and DNA sequences based on excess sequence similarity. If two sequences share much more similarity than expected by chance, the simplest explanation for the excess similarity is common ancestry-homology. The most effective similarity searches compare protein sequences, rather than DNA sequences, for sequences that encode proteins, and use expectation values, rather than percent identity, to infer homology. The BLAST and FASTA packages of sequence comparison programs provide programs for comparing protein and DNA sequences to protein databases (the most sensitive searches). Protein and translated-DNA comparisons to protein databases routinely allow evolutionary look back times from 1 to 2 billion years; DNA:DNA searches are 5-10-fold less sensitive. BLAST and FASTA can be run on popular web sites, but can also be downloaded and installed on local computers. With local installation, target databases can be customized for the sequence data being characterized. With today's very large protein databases, search sensitivity can also be improved by searching smaller comprehensive databases, for example, a complete protein set from an evolutionarily neighboring model organism. By default, BLAST and FASTA use scoring strategies target for distant evolutionary relationships; for comparisons involving short domains or queries, or searches that seek relatively close homologs (e.g. mouse-human), shallower scoring matrices will be more effective. Both BLAST and FASTA provide very accurate statistical estimates, which can be used to reliably identify protein sequences that diverged more than 2 billion years ago.

Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data.

PubMed

Krøigård, Anne Bruun; Thomassen, Mads; Lænkholm, Anne-Vibeke; Kruse, Torben A; Larsen, Martin Jakob

2016-01-01

Next generation sequencing is extensively applied to catalogue somatic mutations in cancer, in research settings and increasingly in clinical settings for molecular diagnostics, guiding therapy decisions. Somatic variant callers perform paired comparisons of sequencing data from cancer tissue and matched normal tissue in order to detect somatic mutations. The advent of many new somatic variant callers creates a need for comparison and validation of the tools, as no de facto standard for detection of somatic mutations exists and only limited comparisons have been reported. We have performed a comprehensive evaluation using exome sequencing and targeted deep sequencing data of paired tumor-normal samples from five breast cancer patients to evaluate the performance of nine publicly available somatic variant callers: EBCall, Mutect, Seurat, Shimmer, Indelocator, Somatic Sniper, Strelka, VarScan 2 and Virmid for the detection of single nucleotide mutations and small deletions and insertions. We report a large variation in the number of calls from the nine somatic variant callers on the same sequencing data and highly variable agreement. Sequencing depth had markedly diverse impact on individual callers, as for some callers, increased sequencing depth highly improved sensitivity. For SNV calling, we report EBCall, Mutect, Virmid and Strelka to be the most reliable somatic variant callers for both exome sequencing and targeted deep sequencing. For indel calling, EBCall is superior due to high sensitivity and robustness to changes in sequencing depths.

Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data

PubMed Central

Krøigård, Anne Bruun; Thomassen, Mads; Lænkholm, Anne-Vibeke; Kruse, Torben A.; Larsen, Martin Jakob

2016-01-01

Next generation sequencing is extensively applied to catalogue somatic mutations in cancer, in research settings and increasingly in clinical settings for molecular diagnostics, guiding therapy decisions. Somatic variant callers perform paired comparisons of sequencing data from cancer tissue and matched normal tissue in order to detect somatic mutations. The advent of many new somatic variant callers creates a need for comparison and validation of the tools, as no de facto standard for detection of somatic mutations exists and only limited comparisons have been reported. We have performed a comprehensive evaluation using exome sequencing and targeted deep sequencing data of paired tumor-normal samples from five breast cancer patients to evaluate the performance of nine publicly available somatic variant callers: EBCall, Mutect, Seurat, Shimmer, Indelocator, Somatic Sniper, Strelka, VarScan 2 and Virmid for the detection of single nucleotide mutations and small deletions and insertions. We report a large variation in the number of calls from the nine somatic variant callers on the same sequencing data and highly variable agreement. Sequencing depth had markedly diverse impact on individual callers, as for some callers, increased sequencing depth highly improved sensitivity. For SNV calling, we report EBCall, Mutect, Virmid and Strelka to be the most reliable somatic variant callers for both exome sequencing and targeted deep sequencing. For indel calling, EBCall is superior due to high sensitivity and robustness to changes in sequencing depths. PMID:27002637

Persistence of Mycoplasma hyopneumoniae sequence types in spite of a control program for enzootic pneumonia in pigs.

PubMed

Overesch, Gudrun; Kuhnert, Peter

2017-09-15

Enzootic pneumonia (EP) in pigs caused by Mycoplasma (M.) hyopneumoniae has successfully been combatted in Switzerland. A control program was fully implemented in 2004 which is based on total depopulation strategies of affected fattening farms as well as partial depopulation on breeding farms. Thereby, the number of cases has dropped drastically from more than 200 in 2003 to two cases in 2013. Currently monitoring is done based on clinical observation and subsequent diagnostic of coughing pigs. Moreover, in case of more than 10% gross pathological lesions per slaughter batch laboratory confirmation for EP is compulsory. Despite these strict measures it was not possible to eliminate M. hyopneumoniae from Swiss pig production. In fact, during the last few years the number of EP cases has slightly increased. Therefore, genotyping of the involved M. hyopneumoniae strains was conducted in order to elucidate possible sources and routes of infection. All available and typeable samples from totally 22 cases during the period 2014-2016 were investigated by extended multilocus sequence typing (MLST). A total of 16 cases, including eight from 2014, five from 2015 and three from 2016 could thereby be included in the study. MLST revealed that the majority of cases in 2014/2015 were due to two major spread scenarios, i.e. two M. hyopneumoniae sequence types, each scenario involving six individual production farms in five to six different Cantons (states), respectively. Moreover, by comparison of archived sequences some sequence types were observed over ten years demonstrating their persistence over a long time and the possible partial failure of elimination measures in Switzerland. Insufficient sanitation on affected farms and subsequent animal transport of symptomless infected pigs could lead to recurrent cases. Wild boar harbor identical strains found with EP but solid data are missing to assign a role as reservoir to this wild animal. Implementing a monitoring scheme for M. hyopneumoniae in wild boar in combination with genotyping of all available samples from domestic pigs could direct responsible authorities to possible gaps and deficiencies of control measures taken for combating enzootic pneumonia. With the newly installed PubMLST database sequence types for M. hyopneumoniae are now available and allow tracing back strains on the international level. Copyright © 2017 Elsevier B.V. All rights reserved.

A 3D sequence-independent representation of the protein data bank.

PubMed

Fischer, D; Tsai, C J; Nussinov, R; Wolfson, H

1995-10-01

Here we address the following questions. How many structurally different entries are there in the Protein Data Bank (PDB)? How do the proteins populate the structural universe? To investigate these questions a structurally non-redundant set of representative entries was selected from the PDB. Construction of such a dataset is not trivial: (i) the considerable size of the PDB requires a large number of comparisons (there were more than 3250 structures of protein chains available in May 1994); (ii) the PDB is highly redundant, containing many structurally similar entries, not necessarily with significant sequence homology, and (iii) there is no clear-cut definition of structural similarity. The latter depend on the criteria and methods used. Here, we analyze structural similarity ignoring protein topology. To date, representative sets have been selected either by hand, by sequence comparison techniques which ignore the three-dimensional (3D) structures of the proteins or by using sequence comparisons followed by linear structural comparison (i.e. the topology, or the sequential order of the chains, is enforced in the structural comparison). Here we describe a 3D sequence-independent automated and efficient method to obtain a representative set of protein molecules from the PDB which contains all unique structures and which is structurally non-redundant. The method has two novel features. The first is the use of strictly structural criteria in the selection process without taking into account the sequence information. To this end we employ a fast structural comparison algorithm which requires on average approximately 2 s per pairwise comparison on a workstation. The second novel feature is the iterative application of a heuristic clustering algorithm that greatly reduces the number of comparisons required. We obtain a representative set of 220 chains with resolution better than 3.0 A, or 268 chains including lower resolution entries, NMR entries and models. The resulting set can serve as a basis for extensive structural classification and studies of 3D recurring motifs and of sequence-structure relationships. The clustering algorithm succeeds in classifying into the same structural family chains with no significant sequence homology, e.g. all the globins in one single group, all the trypsin-like serine proteases in another or all the immunoglobulin-like folds into a third. In addition, unexpected structural similarities of interest have been automatically detected between pairs of chains. A cluster analysis of the representative structures demonstrates the way the "structural universe' is populated.

The very surface states on GaAs(001) surface by means of electronic and optical techniques

NASA Astrophysics Data System (ADS)

Placidi, Ernesto

2004-03-01

Until now, Reflectance-Anisotropy Spectroscopy (RAS) in the visible has been the most used technique to quantify the anisotropy of these surfaces [1]. Low-energy electrons are believed to perturb more than photons and have not been employed to this purpose, despite their shorter penetration depth. In our presentation we show experimental results of High-Resolution Electron-Energy-Loss Spectroscopy (HREELS) applied to investigate the anisotropy of the GaAs(001)-c(4x4) and beta2(2x4) surfaces. We demonstrate the higher surface sensitivity of HREELS compared to RAS. Measurements are performed on high-quality samples grown in situ by Molecular Beam Epitaxy (MBE). The loss spectra taken in the two orthogonal surface directions have different intensities, particularly close to the fundamental gap, where surface like resonances, involving dimers, are observed. We discuss our HREELS and RAS data to identify the source of the anisotropy close to the critical point transitions where surface and bulk like excitations coexist. Our data are in very good agreement with DFT-LDA calculations for loss energies up to 3.5 eV [2]. The exposure of the reconstructed surfaces to molecular oxygen affects strongly the spectral features. [1] D.E.Aspnes, J.P.Harbison, A.A.Studna, L.T.Florez, Phys. Rev. Lett. 59 (1987) 1687; I.Kamiya, D.E.Aspnes, L.T.Florez, and J.T.Harbison, Phys. Rev. B 46 (1992) 15894. [2] A.Balzarotti, F.Arciprete, M.Fanfoni, F.Patella, E. Placidi, G.Onida, R.Del Sole, Surf. Sci. Lett. 524, L71 (2003); A.Balzarotti, E.Placidi, F.Arciprete, M.Fanfoni, F.Patella, Physical Review B, 67 115332 (2003); F.Arciprete, C. Goletti, E. Placidi, M.Fanfoni, F.Patella, P. Chiaradia, C. Hogan and A. Balzarotti, Phys. Rev. B 68 125328 (2003).

Sequence comparison alignment-free approach based on suffix tree and L-words frequency.

PubMed

Soares, Inês; Goios, Ana; Amorim, António

2012-01-01

The vast majority of methods available for sequence comparison rely on a first sequence alignment step, which requires a number of assumptions on evolutionary history and is sometimes very difficult or impossible to perform due to the abundance of gaps (insertions/deletions). In such cases, an alternative alignment-free method would prove valuable. Our method starts by a computation of a generalized suffix tree of all sequences, which is completed in linear time. Using this tree, the frequency of all possible words with a preset length L-L-words--in each sequence is rapidly calculated. Based on the L-words frequency profile of each sequence, a pairwise standard Euclidean distance is then computed producing a symmetric genetic distance matrix, which can be used to generate a neighbor joining dendrogram or a multidimensional scaling graph. We present an improvement to word counting alignment-free approaches for sequence comparison, by determining a single optimal word length and combining suffix tree structures to the word counting tasks. Our approach is, thus, a fast and simple application that proved to be efficient and powerful when applied to mitochondrial genomes. The algorithm was implemented in Python language and is freely available on the web.

Using the Self-Select Paradigm to Delineate the Nature of Speech Motor Programming

ERIC Educational Resources Information Center

Wright, David L.; Robin, Don A.; Rhee, Jooyhun; Vaculin, Amber; Jacks, Adam; Guenther, Frank H.; Fox, Peter T.

2009-01-01

Purpose: The authors examined the involvement of 2 speech motor programming processes identified by S. T. Klapp (1995, 2003) during the articulation of utterances differing in syllable and sequence complexity. According to S. T. Klapp, 1 process, INT, resolves the demands of the programmed unit, whereas a second process, SEQ, oversees the serial…

The North Carolina Social Studies Standard Course of Study, Effective 2003-2004 School Year.

ERIC Educational Resources Information Center

North Carolina State Dept. of Public Instruction, Raleigh.

The primary purpose of the social studies is to help young people, as future culturally diverse, democratic citizens in an interdependent world, develop the ability to make informed and reasoned decisions for the public good as citizens. Underlying this scope and sequence is the principle that neither gender, economic status, nor cultural…

Rapid Acquisition in Concurrent Chains: Evidence for a Decision Model

ERIC Educational Resources Information Center

Grace, Randolph C.; McLean, Anthony P.

2006-01-01

Pigeons' choice in concurrent chains can adapt to rapidly changing contingencies. Grace, Bragason, and McLean (2003) found that relative initial-link response rate was sensitive to the immediacy ratio in the current session when one of the terminal-link fixed-interval schedules was changed daily according to a pseudorandom binary sequence (e.g.,…

Education and Training for American Competitiveness. Hearings before the Committee on Education and Labor, House of Representatives, One Hundredth Congress, First Session on H.R. 5, School Improvement Act of 1987; and H.R. 90 Education and Training for American Competitiveness Act of 1987 (February 10, 11, 18, 25; March 4, 11, and 12, 1987).

ERIC Educational Resources Information Center

Congress of the U.S., Washington, DC. House Committee on Education and Labor.

This congressional report contains testimony pertinent to the passage of the School Improvement Act of 1987 and the Education and Training for American Competitiveness Act of 1987. Testimony by representatives of the following agencies and organizations is included in the report: New York University; the United Steelworkers of America; the…

Biodegradation of Hydrocarbons as a Remediation Method for Petroleum Contaminants in the Environment or as a Treatment Method for Petroleum Wastes (A Review and Analysis of Recent Field Study Literature)

DTIC Science & Technology

1989-12-01

vitality and propaqation. I1-C-2. Shelford’s Law of Tolerance Atlas and Bartha ( Atlas and Bartha , 1987) interpret this law to state: the abundance of...structure will eventually be released as carbon dioxide ( Atlas and Bartha , 1987; Grubbs and Molnaa,. 1988; Lee, 1989; Stover, 1989) Aerobic heterotrophs... Atlas and Bartha (1987) 37 .A-I established between inflow and effluent once the tank is filled ( Atlas and Bartha , 1987; Thomas et al., 1987a

Prevalence of Intimate Partner Violence, Stalking, and Sexual Violence Among Active Duty Women and Wives of Active Duty Men - Comparisons with Women in the U.S. General Population, 2010

DTIC Science & Technology

2013-03-01

sleeping quarters) (e.g., Sadler, Booth , Cook, & Doebbeling, 2003; Sadler, Booth , Cook, Torner, & Doebbeling, 2001) and the physical and mental health...index.php/research. Sadler, A. G., Booth , B. M., Cook, B. L., & Doebbeling, B. N. (2003). Factors associated with women’s risk of rape in the military...environment. American Journal of Industrial Medicine, 43(3), 262-273. Sadler, A. G., Booth , B. M., Cook, B. L., Torner, J. C., & Doebbeling, B.N. (2001

Funding of US biomedical research, 2003-2008.

PubMed

Dorsey, E Ray; de Roulet, Jason; Thompson, Joel P; Reminick, Jason I; Thai, Ashley; White-Stellato, Zachary; Beck, Christopher A; George, Benjamin P; Moses, Hamilton

2010-01-13

With the exception of the American Recovery and Reinvestment Act, funding support for biomedical research in the United States has slowed after a decade of doubling. However, the extent and scope of slowing are largely unknown. To quantify funding of biomedical research in the United States from 2003 to 2008. Publicly available data were used to quantify funding from government (federal, state, and local), private, and industry sources. Regression models were used to compare financial trends between 1994-2003 and 2003-2007. The numbers of new drug and device approvals by the US Food and Drug Administration over the same period were also evaluated. Funding and growth rates by source; numbers of US Food and Drug Administration approvals. Biomedical research funding increased from $75.5 billion in 2003 to $101.1 billion in 2007. In 2008, funding from the National Institutes of Health and industry totaled $88.8 billion. In 2007, funding from these sources, adjusted for inflation, was $90.2 billion. Adjusted for inflation, funding from 2003 to 2007 increased by 14%, for a compound annual growth rate of 3.4%. By comparison, funding from 1994 to 2003 increased at an annual rate of 7.8% (P < .001). In 2007, industry (58%) was the largest funder, followed by the federal government (33%). Modest increase in funding was not accompanied by an increase in approvals for drugs or devices. In 2007, the United States spent an estimated 4.5% of its total health expenditures on biomedical research and 0.1% on health services research. After a decade of doubling, the rate of increase in biomedical research funding slowed from 2003 to 2007, and after adjustment for inflation, the absolute level of funding from the National Institutes of Health and industry appears to have decreased by 2% in 2008.

ProteinWorldDB: querying radical pairwise alignments among protein sets from complete genomes.

PubMed

Otto, Thomas Dan; Catanho, Marcos; Tristão, Cristian; Bezerra, Márcia; Fernandes, Renan Mathias; Elias, Guilherme Steinberger; Scaglia, Alexandre Capeletto; Bovermann, Bill; Berstis, Viktors; Lifschitz, Sergio; de Miranda, Antonio Basílio; Degrave, Wim

2010-03-01

Many analyses in modern biological research are based on comparisons between biological sequences, resulting in functional, evolutionary and structural inferences. When large numbers of sequences are compared, heuristics are often used resulting in a certain lack of accuracy. In order to improve and validate results of such comparisons, we have performed radical all-against-all comparisons of 4 million protein sequences belonging to the RefSeq database, using an implementation of the Smith-Waterman algorithm. This extremely intensive computational approach was made possible with the help of World Community Grid, through the Genome Comparison Project. The resulting database, ProteinWorldDB, which contains coordinates of pairwise protein alignments and their respective scores, is now made available. Users can download, compare and analyze the results, filtered by genomes, protein functions or clusters. ProteinWorldDB is integrated with annotations derived from Swiss-Prot, Pfam, KEGG, NCBI Taxonomy database and gene ontology. The database is a unique and valuable asset, representing a major effort to create a reliable and consistent dataset of cross-comparisons of the whole protein content encoded in hundreds of completely sequenced genomes using a rigorous dynamic programming approach. The database can be accessed through http://proteinworlddb.org

A PRESTO-SENSE sequence with alternating partial-Fourier encoding for rapid susceptibility-weighted 3D MRI time series.

PubMed

Klarhöfer, Markus; Dilharreguy, Bixente; van Gelderen, Peter; Moonen, Chrit T W

2003-10-01

A 3D sequence for dynamic susceptibility imaging is proposed which combines echo-shifting principles (such as PRESTO), sensitivity encoding (SENSE), and partial-Fourier acquisition. The method uses a moderate SENSE factor of 2 and takes advantage of an alternating partial k-space acquisition in the "slow" phase encode direction allowing an iterative reconstruction using high-resolution phase estimates. Offering an isotropic spatial resolution of 4 x 4 x 4 mm(3), the novel sequence covers the whole brain including parts of the cerebellum in 0.5 sec. Its temporal signal stability is comparable to that of a full-Fourier, full-FOV EPI sequence having the same dynamic scan time but much less brain coverage. Initial functional MRI experiments showed consistent activation in the motor cortex with an average signal change slightly less than that of EPI. Copyright 2003 Wiley-Liss, Inc.

Recognition by Linear Combination of Models

DTIC Science & Technology

1989-08-01

to the model (or to the viewed object) prior to, or during the matching stage. Such an approach is used in [Chien & Aggarwal 1987 , Faugeras & Hebert...1986, Fishler & Bolles 1981, Huttenlocher & Ullman 1987 , Lowe 1985, Thompson & Mundy 1987 , Ullman 1986]. Key problems that arise in any alignment...cludes 3-D rotation, translation and scaling, followed by an orthographic projection. The 1 transformation is determined as in [Huttenlocher & Ullman 1987

Rates and fluxes of centennial-scale carbon storage in the fine-grained sediments from the central South Yellow Sea and Min-Zhe belt, East China Sea

NASA Astrophysics Data System (ADS)

Wang, Jianghai; Xiao, Xi; Zhou, Qianzhi; Xu, Xiaoming; Zhang, Chenxi; Liu, Jinzhong; Yuan, Dongliang

2018-01-01

The global carbon cycle has played a key role in mitigating global warming and climate change. Long-term natural and anthropogenic processes influence the composition, sources, burial rates, and fluxes of carbon in sediments on the continental shelf of China. In this study, the rates, fluxes, and amounts of carbon storage at the centennial scale were estimated and demonstrated using the case study of three fine-grained sediment cores from the central South Yellow Sea area (SYSA) and Min-Zhe belt (MZB), East China Sea. Based on the high-resolution temporal sequences of total carbon (TC) and total organic carbon (TOC) contents, we reconstructed the annual variations of historical marine carbon storage, and explored the influence of terrestrial and marine sources on carbon burial at the centennial scale. The estimated TC storage over 100 years was 1.18×108 t in the SYSA and 1.45×109 t in the MZB. The corrected TOC storage fluxes at the centennial scale ranged from 17 to 28 t/(km2·a)in the SYSA and from 56 to 148 t/(km2·a) in the MZB. The decrease of terrestrial materials and the increase of marine primary production suggest that the TOC buried in the sediments in the SYSA and MZB was mainly derived from the marine autogenetic source. In the MZB, two depletion events occurred in TC and TOC storage from 1985 to 1987 and 2003 to 2006, which were coeval with the water impoundment in the Gezhouba and Three Gorges dams, respectively. The high-resolution records of the carbon storage rates and fluxes in the SYSA and MZB reflect the synchronous responses to human activities and provide an important reference for assessing the carbon sequestration capacity of the marginal seas of China.

Ovum pick up and in vitro production in the bovine after use in several generations: a 2005 status.

PubMed

van Wagtendonk-de Leeuw, A M

2006-03-15

The first In Vitro Produced (IVP) calf was born in 1981 and the non-surgical Ovum Pick Up (OPU) technique for the bovine was adapted from the human in 1987. Since then, considerable research has been aimed at improving both technologies in the bovine. Both OPU and IVP can now be seen as mature technologies. It can be estimated that more than 200,000 IVP calves have been born world wide to date, and when the two technologies are combined they are capable of producing over 50 calves per donor cow per year, albeit with a large variation between donors. Not many new breakthroughs are expected for OPU. For IVP however, automation and miniaturization as well as a greater understanding of the embryo through the application of gene based technologies such as micro-arrays, may provide an in vitro environment that is more in vivo-like than traditional micro drop/well systems. This improved environment should result in higher embryo developmental rates as well as improved quality and welfare of subsequent offspring. The application of OPU/IVP has progressed from treating infertile high genetic multiple ovulation and embryo transfer (MOET) cows in commercial situations to enhancing breeding scheme designs. With the bovine genome being rapidly sequenced and bovine genes for traits of economic interest becoming available in the coming years, OPU/IVP will prove invaluable in rapidly multiplying rare genes or Quantitative Trait Loci (QTL) of high value. In due course, it is anticipated that Marker Assisted Selection or Gene Assisted Selection (MAS/GAS) schemes will be more widely implemented. In addition, OPU, and particularly IVP, provide the basis for more advanced technologies such as cloning and transgenics. This paper is dedicated to celebrate and recognize the significant contributions made by Theo Kruip (1939-2003) to the wide area of bovine OPU and IVP.

The LANL hemorrhagic fever virus database, a new platform for analyzing biothreat viruses.

PubMed

Kuiken, Carla; Thurmond, Jim; Dimitrijevic, Mira; Yoon, Hyejin

2012-01-01

Hemorrhagic fever viruses (HFVs) are a diverse set of over 80 viral species, found in 10 different genera comprising five different families: arena-, bunya-, flavi-, filo- and togaviridae. All these viruses are highly variable and evolve rapidly, making them elusive targets for the immune system and for vaccine and drug design. About 55,000 HFV sequences exist in the public domain today. A central website that provides annotated sequences and analysis tools will be helpful to HFV researchers worldwide. The HFV sequence database collects and stores sequence data and provides a user-friendly search interface and a large number of sequence analysis tools, following the model of the highly regarded and widely used Los Alamos HIV database [Kuiken, C., B. Korber, and R.W. Shafer, HIV sequence databases. AIDS Rev, 2003. 5: p. 52-61]. The database uses an algorithm that aligns each sequence to a species-wide reference sequence. The NCBI RefSeq database [Sayers et al. (2011) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 39, D38-D51.] is used for this; if a reference sequence is not available, a Blast search finds the best candidate. Using this method, sequences in each genus can be retrieved pre-aligned. The HFV website can be accessed via http://hfv.lanl.gov.

[Study on the genetic difference of SEO type Hantaviruses].

PubMed

Zhang, X; Zhou, S; Wang, H; Hu, J; Guan, Z; Liu, H

2000-10-01

To understand the genetic type of Hantaviruses and the difference between them caused by rodents in Beijing and to furhter explore the source of the infectious factors. Hantavirus RNA, isolated from lungs of rodents captured in Beijing and positive with Hantavirus antigens with frozen sectioning and Immunofluorescent assay, were reverse-transcribed and amplified with PCR with Hantavirus-specific primers. Five of the PCR amplifications were discovered and sequenced with 300 bp sequence data of M segments (from 2003 - 2302nt according cDNA of seoul 8039 strain). Nucleotide sequence homology showed that they were sequences of SEO-type Hantavirus. Compared with SEO type Hantavirus, the nucleotide sequence homology of these samples was more than 94% while the homology of amonia acid sequence was more than 98%. When compared with HNT type Hantavirus, the homology of nucleotide sequence became less than 72% with the homology of amonia acid sequence less than 81%. Similar to other Hantavirus of SEO type, their nucleotide sequences and deduced amino acid sequences were highly preserved. Phylogenetic tree analysis showed that the five viruses could be divided into at least 4 branches. It was quite likely that there were at least two sub-type SEO viruses with 4 branches that were circulating in Beijing.

Decay of the electron number density in the nitrogen afterglow using a hairpin resonator probe

DOE Office of Scientific and Technical Information (OSTI.GOV)

Siefert, Nicholas S.; Ganguly, Biswa N.; Sands, Brian L.

A hairpin resonator was used to measure the electron number density in the afterglow of a nitrogen glow discharge (p=0.25-0.75 Torr). Electron number densities were measured using a time-dependent approach similar to the approach used by Spencer et al. [J. Phys. D 20, 923 (1987)]. The decay time of the electron number density was used to determine the electron temperature in the afterglow, assuming a loss of electrons via ambipolar diffusion to the walls. The electron temperature in the near afterglow remained between 0.4 and 0.6 eV, depending on pressure. This confirms the work by Guerra et al. [IEEE Trans.more » Plasma. Sci. 31, 542 (2003)], who demonstrated experimentally and numerically that the electron temperature stays significantly above room temperature via superelastic collisions with highly vibrationally excited ground state molecules and metastables, such as A {sup 3}{sigma}{sub u}{sup +}.« less

Alcohol addiction and the attachment system: an empirical study of attachment style, alexithymia, and psychiatric disorders in alcoholic inpatients.

PubMed

De Rick, Ann; Vanheule, Stijn; Verhaeghe, Paul

2009-01-01

This study aims at investigating alcoholic inpatients' attachment system by combining a measurement of adult attachment style (AAQ, Hazan and Shaver, 1987. Journal of Personality and Social Psychology, 52(3): 511-524) and the degree of alexithymia (BVAQ, Bermond and Vorst, 1998. Bermond-Vorst Alexithymia Questionnaire, Unpublished data). Data were collected from 101 patients (71 men, 30 women) admitted to a psychiatric hospital in Belgium for alcohol use-related problems, between September 2003 and December 2004. To investigate the research question, cluster analyses and regression analyses are performed. We found that it makes sense to distinguish three subgroups of alcoholic inpatients with different degrees of impairment of the attachment system. Our results also reveal a pattern of correspondence between the severity of psychiatric symptoms-personality disorder traits (ADP-IV), anxiety (STAI), and depression (BDI-II-Nl)-and the severity of the attachment system's impairment. Limitations of the study and suggestions for further research are highlighted and implications for diagnosis and treatment are discussed.

Unfinished business: the rebirth of the ALPO Lunar Dome Survey

NASA Astrophysics Data System (ADS)

Huddleston, Marvin W.

2004-05-01

The ALPO board of directors approved the revival of the Lunar Dome Survey during their annual board meeting in the summer of 2003. The initial LDS program was conceived by Harry Jamieson in the early 1960's and headed by him when the British Astronomical Assn. (BAA) was invited to join the program, which they did. The joint effort between the ALPO and BAA lunar sections lasted for approximately 14 years, ending officially around 1976 due to a decline in interest. The program was again revived in 1987 under the direction of Jim Phillips and lasted until the mid-1990's. All told, this program has been one of the longest running programs in the history of the Lunar Section of ALPO. The revived program will concentrate on cleaning up the existing catalog, classification and confirmation of the objects contained therein, and analysis of the database created in the process. It is hoped that, as in the past, much of the newly revived Lunar Dome Survey will be an international effort.

IDENTIFICATION OF AVIAN-SPECIFIC FECAL METAGENOMIC SEQUENCES USING GENOME FRAGMENT ENRICHMENTS

EPA Science Inventory

Sequence analysis of microbial genomes has provided biologists the opportunity to compare genetic differences between closely related microorganisms. While random sequencing has also been used to study natural microbial communities, metagenomic comparisons via sequencing analysis...

Health status of air force veterans occupationally exposed to herbicides in Vietnam: I. Physical health

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wolfe, W.H.; Michalek, J.E.; Miner, J.C.

1990-10-10

The Air Force Health Study is a 20-year comprehensive assessment of the health of Air Force veterans of Operation Ranch Hand, the unit responsible for aerial spraying of herbicides in Vietnam. The study compares the health and noncombat mortality of Ranch Hand veterans with a comparison group of Air Force veterans primarily involved with cargo missions in Southeast Asia but who were not exposed to herbicides. This report summarizes the health of these veterans as determined at the third in a series of physical examinations. Nine hundred ninety-five Ranch Hands and 1,299 comparison subjects attended the second follow-up examination inmore » 1987. The two groups were similar in reported health problems, diagnosed skin conditions, and hepatic, cardiovascular, and immune profiles. Ranch Hands have experienced significantly more basal cell carcinomas than comparison subjects. The two groups were not different with respect to melanoma and systemic cancer.« less

Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17.

PubMed

Terpolilli, Jason; Hill, Yvette; Tian, Rui; Howieson, John; Bräu, Lambert; Goodwin, Lynne; Han, James; Liolios, Konstantinos; Huntemann, Marcel; Pati, Amrita; Woyke, Tanja; Mavromatis, Konstantinos; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; Reeve, Wayne

2013-12-20

Ensifer meliloti WSM1022 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Medicago. WSM1022 was isolated in 1987 from a nodule recovered from the roots of the annual Medicago orbicularis growing on the Cyclades Island of Naxos in Greece. WSM1022 is highly effective at fixing nitrogen with M. truncatula and other annual species such as M. tornata and M. littoralis and is also highly effective with the perennial M. sativa (alfalfa or lucerne). In common with other characterized E. meliloti strains, WSM1022 will nodulate but fixes poorly with M. polymorpha and M. sphaerocarpos and does not nodulate M. murex. Here we describe the features of E. meliloti WSM1022, together with genome sequence information and its annotation. The 6,649,661 bp high-quality-draft genome is arranged into 121 scaffolds of 125 contigs containing 6,323 protein-coding genes and 75 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

A COMPARISON OF TWO RAPID BIOLOGICAL ASSESSMENT SAMPLING METHODS FOR MACROINVERTEBRATES

EPA Science Inventory

In 2003, the Office of Research and Developments (ORD's) National Exposure Research Laboratory initiated a collaborative research effort with U.S. EPA Region 3 to conduct a study comparing two rapid biological assessment methods for collecting stream macroinvertebrates. One metho...

Report on Catholic School Leadership: Ten Years Later

ERIC Educational Resources Information Center

Schuttloffel, Merylann J.

2014-01-01

The current follow-up study to data first presented in 2003 and published in "Report on the Future of Catholic School Leadership," provides the comparisons, analysis, commentary, and some reflections and recommendations on the study implications; useful to individual schools and diocesan leaders.