Publishing datasets with eSciDoc and panMetaDocs

NASA Astrophysics Data System (ADS)

Ulbricht, D.; Klump, J.; Bertelmann, R.

2012-04-01

Currently serveral research institutions worldwide undertake considerable efforts to have their scientific datasets published and to syndicate them to data portals as extensively described objects identified by a persistent identifier. This is done to foster the reuse of data, to make scientific work more transparent, and to create a citable entity that can be referenced unambigously in written publications. GFZ Potsdam established a publishing workflow for file based research datasets. Key software components are an eSciDoc infrastructure [1] and multiple instances of the data curation tool panMetaDocs [2]. The eSciDoc repository holds data objects and their associated metadata in container objects, called eSciDoc items. A key metadata element in this context is the publication status of the referenced data set. PanMetaDocs, which is based on PanMetaWorks [3], is a PHP based web application that allows to describe data with any XML-based metadata schema. The metadata fields can be filled with static or dynamic content to reduce the number of fields that require manual entries to a minimum and make use of contextual information in a project setting. Access rights can be applied to set visibility of datasets to other project members and allow collaboration on and notifying about datasets (RSS) and interaction with the internal messaging system, that was inherited from panMetaWorks. When a dataset is to be published, panMetaDocs allows to change the publication status of the eSciDoc item from status "private" to "submitted" and prepare the dataset for verification by an external reviewer. After quality checks, the item publication status can be changed to "published". This makes the data and metadata available through the internet worldwide. PanMetaDocs is developed as an eSciDoc application. It is an easy to use graphical user interface to eSciDoc items, their data and metadata. It is also an application supporting a DOI publication agent during the process of publishing scientific datasets as electronic data supplements to research papers. Publication of research manuscripts has an already well established workflow that shares junctures with other processes and involves several parties in the process of dataset publication. Activities of the author, the reviewer, the print publisher and the data publisher have to be coordinated into a common data publication workflow. The case of data publication at GFZ Potsdam displays some specifics, e.g. the DOIDB webservice. The DOIDB is a proxy service at GFZ for the DataCite [4] DOI registration and its metadata store. DOIDB provides a local summary of the dataset DOIs registered through GFZ as a publication agent. An additional use case for the DOIDB is its function to enrich the datacite metadata with additional custom attributes, like a geographic reference in a DIF record. These attributes are at the moment not available in the datacite metadata schema but would be valuable elements for the compilation of data catalogues in the earth sciences and for dissemination of catalogue data via OAI-PMH. [1] http://www.escidoc.org , eSciDoc, FIZ Karlruhe, Germany [2] http://panmetadocs.sf.net , panMetaDocs, GFZ Potsdam, Germany [3] http://metaworks.pangaea.de , panMetaWorks, Dr. R. Huber, MARUM, Univ. Bremen, Germany [4] http://www.datacite.org

San Mateo County's Server Information Program (S.I.P.): A Community-Based Alcohol Server Training Program.

ERIC Educational Resources Information Center

de Miranda, John

The field of alcohol server awareness and training has grown dramatically in the past several years and the idea of training servers to reduce alcohol problems has become a central fixture in the current alcohol policy debate. The San Mateo County, California Server Information Program (SIP) is a community-based prevention strategy designed to…

Sustainable brooder for supporting local chicken in North Sumatera Province, Indonesia

NASA Astrophysics Data System (ADS)

Ginting, N.; Hidayat, R.

2018-02-01

Demand for local chicken has lasted for ages in Sumatera Utara Province, Indonesia. Demand is higher than supply because local chicken has low productivity which caused by several factors, for example heater or brooder for day old chicken (DOC). People who live in villages where mostly local chicken are raised have difficulty in serving brooder as electricity is expensive. In Biological Laboratory, Animal Production Programme Study, University of Sumatera Utara, a study has been conducted from August until November 2016. The objective of this study is to investigate sustainable brooder for local chicken. A study of 300 local DOC with designs: T1) local DOC + electric lamp brooder, T2) local DOC + biogas lamp brooder, T3) local DOC + propane lamp brooder has conducted. The key parameters measured were temperature stability, DOC spread, body weight gain, and mortality. Designs T1, T2 and T3 were almost equal in temperature stability, DOC spread, body weight gain and mortality while T2 was superior as it was environmentally friendly. A recommendation for local people to use biogas brooder instead of electric or LPG brooder.

A distributed, graphical user interface based, computer control system for atomic physics experiments

NASA Astrophysics Data System (ADS)

Keshet, Aviv; Ketterle, Wolfgang

2013-01-01

Atomic physics experiments often require a complex sequence of precisely timed computer controlled events. This paper describes a distributed graphical user interface-based control system designed with such experiments in mind, which makes use of off-the-shelf output hardware from National Instruments. The software makes use of a client-server separation between a user interface for sequence design and a set of output hardware servers. Output hardware servers are designed to use standard National Instruments output cards, but the client-server nature should allow this to be extended to other output hardware. Output sequences running on multiple servers and output cards can be synchronized using a shared clock. By using a field programmable gate array-generated variable frequency clock, redundant buffers can be dramatically shortened, and a time resolution of 100 ns achieved over effectively arbitrary sequence lengths.

A distributed, graphical user interface based, computer control system for atomic physics experiments.

PubMed

Keshet, Aviv; Ketterle, Wolfgang

2013-01-01

Atomic physics experiments often require a complex sequence of precisely timed computer controlled events. This paper describes a distributed graphical user interface-based control system designed with such experiments in mind, which makes use of off-the-shelf output hardware from National Instruments. The software makes use of a client-server separation between a user interface for sequence design and a set of output hardware servers. Output hardware servers are designed to use standard National Instruments output cards, but the client-server nature should allow this to be extended to other output hardware. Output sequences running on multiple servers and output cards can be synchronized using a shared clock. By using a field programmable gate array-generated variable frequency clock, redundant buffers can be dramatically shortened, and a time resolution of 100 ns achieved over effectively arbitrary sequence lengths.

Geospatial Authentication

NASA Technical Reports Server (NTRS)

Lyle, Stacey D.

2009-01-01

A software package that has been designed to allow authentication for determining if the rover(s) is/are within a set of boundaries or a specific area to access critical geospatial information by using GPS signal structures as a means to authenticate mobile devices into a network wirelessly and in real-time has been developed. The advantage lies in that the system only allows those with designated geospatial boundaries or areas into the server. The Geospatial Authentication software has two parts Server and Client. The server software is a virtual private network (VPN) developed in Linux operating system using Perl programming language. The server can be a stand-alone VPN server or can be combined with other applications and services. The client software is a GUI Windows CE software, or Mobile Graphical Software, that allows users to authenticate into a network. The purpose of the client software is to pass the needed satellite information to the server for authentication.

Design and implementation of streaming media server cluster based on FFMpeg.

PubMed

Zhao, Hong; Zhou, Chun-long; Jin, Bao-zhao

2015-01-01

Poor performance and network congestion are commonly observed in the streaming media single server system. This paper proposes a scheme to construct a streaming media server cluster system based on FFMpeg. In this scheme, different users are distributed to different servers according to their locations and the balance among servers is maintained by the dynamic load-balancing algorithm based on active feedback. Furthermore, a service redirection algorithm is proposed to improve the transmission efficiency of streaming media data. The experiment results show that the server cluster system has significantly alleviated the network congestion and improved the performance in comparison with the single server system.

Design and Implementation of Streaming Media Server Cluster Based on FFMpeg

PubMed Central

Zhao, Hong; Zhou, Chun-long; Jin, Bao-zhao

2015-01-01

Poor performance and network congestion are commonly observed in the streaming media single server system. This paper proposes a scheme to construct a streaming media server cluster system based on FFMpeg. In this scheme, different users are distributed to different servers according to their locations and the balance among servers is maintained by the dynamic load-balancing algorithm based on active feedback. Furthermore, a service redirection algorithm is proposed to improve the transmission efficiency of streaming media data. The experiment results show that the server cluster system has significantly alleviated the network congestion and improved the performance in comparison with the single server system. PMID:25734187

CDC WONDER: a cooperative processing architecture for public health.

PubMed Central

Friede, A; Rosen, D H; Reid, J A

1994-01-01

CDC WONDER is an information management architecture designed for public health. It provides access to information and communications without the user's needing to know the location of data or communication pathways and mechanisms. CDC WONDER users have access to extractions from some 40 databases; electronic mail (e-mail); and surveillance data processing. System components include the Remote Client, the Communications Server, the Queue Managers, and Data Servers and Process Servers. The Remote Client software resides in the user's machine; other components are at the Centers for Disease Control and Prevention (CDC). The Remote Client, the Communications Server, and the Applications Server provide access to the information and functions in the Data Servers and Process Servers. The system architecture is based on cooperative processing, and components are coupled via pure message passing, using several protocols. This architecture allows flexibility in the choice of hardware and software. One system limitation is that final results from some subsystems are obtained slowly. Although designed for public health, CDC WONDER could be useful for other disciplines that need flexible, integrated information exchange. PMID:7719813

iScreen: world's first cloud-computing web server for virtual screening and de novo drug design based on TCM database@Taiwan

NASA Astrophysics Data System (ADS)

Tsai, Tsung-Ying; Chang, Kai-Wei; Chen, Calvin Yu-Chian

2011-06-01

The rapidly advancing researches on traditional Chinese medicine (TCM) have greatly intrigued pharmaceutical industries worldwide. To take initiative in the next generation of drug development, we constructed a cloud-computing system for TCM intelligent screening system (iScreen) based on TCM Database@Taiwan. iScreen is compacted web server for TCM docking and followed by customized de novo drug design. We further implemented a protein preparation tool that both extract protein of interest from a raw input file and estimate the size of ligand bind site. In addition, iScreen is designed in user-friendly graphic interface for users who have less experience with the command line systems. For customized docking, multiple docking services, including standard, in-water, pH environment, and flexible docking modes are implemented. Users can download first 200 TCM compounds of best docking results. For TCM de novo drug design, iScreen provides multiple molecular descriptors for a user's interest. iScreen is the world's first web server that employs world's largest TCM database for virtual screening and de novo drug design. We believe our web server can lead TCM research to a new era of drug development. The TCM docking and screening server is available at http://iScreen.cmu.edu.tw/.

iScreen: world's first cloud-computing web server for virtual screening and de novo drug design based on TCM database@Taiwan.

PubMed

Tsai, Tsung-Ying; Chang, Kai-Wei; Chen, Calvin Yu-Chian

2011-06-01

The rapidly advancing researches on traditional Chinese medicine (TCM) have greatly intrigued pharmaceutical industries worldwide. To take initiative in the next generation of drug development, we constructed a cloud-computing system for TCM intelligent screening system (iScreen) based on TCM Database@Taiwan. iScreen is compacted web server for TCM docking and followed by customized de novo drug design. We further implemented a protein preparation tool that both extract protein of interest from a raw input file and estimate the size of ligand bind site. In addition, iScreen is designed in user-friendly graphic interface for users who have less experience with the command line systems. For customized docking, multiple docking services, including standard, in-water, pH environment, and flexible docking modes are implemented. Users can download first 200 TCM compounds of best docking results. For TCM de novo drug design, iScreen provides multiple molecular descriptors for a user's interest. iScreen is the world's first web server that employs world's largest TCM database for virtual screening and de novo drug design. We believe our web server can lead TCM research to a new era of drug development. The TCM docking and screening server is available at http://iScreen.cmu.edu.tw/.

RNAiFold: a web server for RNA inverse folding and molecular design.

PubMed

Garcia-Martin, Juan Antonio; Clote, Peter; Dotu, Ivan

2013-07-01

Synthetic biology and nanotechnology are poised to make revolutionary contributions to the 21st century. In this article, we describe a new web server to support in silico RNA molecular design. Given an input target RNA secondary structure, together with optional constraints, such as requiring GC-content to lie within a certain range, requiring the number of strong (GC), weak (AU) and wobble (GU) base pairs to lie in a certain range, the RNAiFold web server determines one or more RNA sequences, whose minimum free-energy secondary structure is the target structure. RNAiFold provides access to two servers: RNA-CPdesign, which applies constraint programming, and RNA-LNSdesign, which applies the large neighborhood search heuristic; hence, it is suitable for larger input structures. Both servers can also solve the RNA inverse hybridization problem, i.e. given a representation of the desired hybridization structure, RNAiFold returns two sequences, whose minimum free-energy hybridization is the input target structure. The web server is publicly accessible at http://bioinformatics.bc.edu/clotelab/RNAiFold, which provides access to two specialized servers: RNA-CPdesign and RNA-LNSdesign. Source code for the underlying algorithms, implemented in COMET and supported on linux, can be downloaded at the server website.

Designing Secure Library Networks.

ERIC Educational Resources Information Center

Breeding, Michael

1997-01-01

Focuses on designing a library network to maximize security. Discusses UNIX and file servers; connectivity to campus, corporate networks and the Internet; separation of staff from public servers; controlling traffic; the threat of network sniffers; hubs that eliminate eavesdropping; dividing the network into subnets; Switched Ethernet;…

The cost of noise reduction for departure and arrival operations of commercial tilt rotor aircraft

NASA Technical Reports Server (NTRS)

Faulkner, H. B.; Swan, W. M.

1976-01-01

The relationship between direct operating cost (DOC) and noise annoyance due to a departure and an arrival operation was developed for commercial tilt rotor aircraft. This was accomplished by generating a series of tilt rotor aircraft designs to meet various noise goals at minimum DOC. These vehicles ranged across the spectrum of possible noise levels from completely unconstrained to the quietest vehicles that could be designed within the study ground rules. Optimization parameters were varied to find the minimum DOC. This basic variation was then extended to different aircraft sizes and technology time frames.

Advances in the Control System for a High Precision Dissolved Organic Carbon Analyzer

NASA Astrophysics Data System (ADS)

Liao, M.; Stubbins, A.; Haidekker, M.

2017-12-01

Dissolved organic carbon (DOC) is a master variable in aquatic ecosystems. DOC in the ocean is one of the largest carbon stores on earth. Studies of the dynamics of DOC in the ocean and other low DOC systems (e.g. groundwater) are hindered by the lack of high precision (sub-micromolar) analytical techniques. Results are presented from efforts to construct and optimize a flow-through, wet chemical DOC analyzer. This study focused on the design, integration and optimization of high precision components and control systems required for such a system (mass flow controller, syringe pumps, gas extraction, reactor chamber with controlled UV and temperature). Results of the approaches developed are presented.

Designing communication and remote controlling of virtual instrument network system

NASA Astrophysics Data System (ADS)

Lei, Lin; Wang, Houjun; Zhou, Xue; Zhou, Wenjian

2005-01-01

In this paper, a virtual instrument network through the LAN and finally remote control of virtual instruments is realized based on virtual instrument and LabWindows/CVI software platform. The virtual instrument network system is made up of three subsystems. There are server subsystem, telnet client subsystem and local instrument control subsystem. This paper introduced virtual instrument network structure in detail based on LabWindows. Application procedure design of virtual instrument network communication, the Client/the programming mode of the server, remote PC and server communication far realizing, the control power of the workstation is transmitted, server program and so on essential technical were introduced. And virtual instruments network may connect to entire Internet on. Above-mentioned technology, through measuring the application in the electronic measurement virtual instrument network that is already built up, has verified the actual using value of the technology. Experiment and application validate that this design is resultful.

A full XML-based approach to creating hypermedia learning modules in web-based environments: application to a pathology course.

PubMed

Staccini, Pascal; Dufour, Jean -Charles; Joubert, Michel; Michiels, Jean -François; Fieschi, Marius

2003-01-01

Nowadays, web-based learning services are a key topic in the pedagogical and learning strategies of universities. While organisational and teaching requirements of the learning environment are being evaluated, technical specifications are emerging, enabling educators to build advanced "units of learning". Changes, however, take a long time and cost-effective solutions have to be found to involve our institutions in such actions. In this paper, we present a model of the components of a course. We detail the method followed to implement this model in hypermedia modules with a viewer that can be played on line or from a CD-ROM. The XML technology has been used to implement all the data structures and a client-side architecture has been designed to build a course viewer. Standards of description of content (such as Dublin Core and DocBook) have been integrated into the data structures. This tool has been populated with data from a pathology course and supports other medical contents. The choice of the architecture and the usefulness of the programming tools are discussed. The means of migrating towards a server-side application are presented.

Designing a Relational Database for the Basic School; Schools Command Web Enabled Officer and Enlisted Database (Sword)

DTIC Science & Technology

2002-06-01

Student memo for personnel MCLLS . . . . . . . . . . . . . . 75 i. Migrate data to SQL Server...The Web Server is on the same server as the SWORD database in the current version. 4: results set 5: dynamic HTML page 6: dynamic HTML page 3: SQL ...still be supported by Access. SQL Server would be a more viable tool for a fully developed application based on the number of potential users and

Design and Delivery of Multiple Server-Side Computer Languages Course

ERIC Educational Resources Information Center

Wang, Shouhong; Wang, Hai

2011-01-01

Given the emergence of service-oriented architecture, IS students need to be knowledgeable of multiple server-side computer programming languages to be able to meet the needs of the job market. This paper outlines the pedagogy of an innovative course of multiple server-side computer languages for the undergraduate IS majors. The paper discusses…

Designing indonesian teacher engagement index (itei) applications based on android

NASA Astrophysics Data System (ADS)

Manalu, S. R.; Sasmoko; Permai, S. D.; Widhoyoko, S. A.; Indrianti, Y.

2018-03-01

Teachers who have a good level of engagement will be able to produce students who engage and excel. Level of national teachers’ engagement needs to be a reference to the level of educational success and equity of national education. The spread of geographically inaccessible Indonesian teachers is a barrier to these measurements. ITEI Android application developed by analysing the geographical problem, so that each teacher can participate wherever they are. The ITEI app is designed by implementing Android on the client side and load balancer on the server side. Android ITEI will feature a number of questions questionnaire to teachers. Meanwhile, the load balancer will distribute the answers to each server for processing. Load Balancer ensures fast data processing and minimize server failure. The results of the processing on the server will be sent back to Android in the form of profiling themselves ITEI teachers. While the data obtained and stored in the server can be used to measure the level of national teachers’ engagement. The result of this research is the design of ITEI application ready to be implemented in order to support the data collection process of teacher national engagement level.

The cost of noise reduction in commercial tilt rotor aircraft

NASA Technical Reports Server (NTRS)

Faulkner, H. B.

1974-01-01

The relationship between direct operating cost (DOC) and departure noise annoyance was developed for commercial tilt rotor aircraft. This was accomplished by generating a series of tilt rotor aircraft designs to meet various noise goals at minimum DOC. These vehicles were spaced across the spectrum of possible noise levels from completely unconstrained to the quietest vehicle that could be designed within the study ground rules. A group of optimization parameters were varied to find the minimum DOC while other inputs were held constant and some external constraints were met. This basic variation was then extended to different aircraft sizes and technology time frames. It was concluded that reducing noise annoyance by designing for lower rotor tip speeds is a very promising avenue for future research and development. It appears that the cost of halving the annoyance compared to an unconstrained design is insignificant and the cost of halving the annoyance again is small.

Application of advanced high speed turboprop technology to future civil short-haul transport aircraft design

NASA Technical Reports Server (NTRS)

Conlon, J. A.; Bowles, J. V.

1978-01-01

With an overall goal of defining the needs and requirements for short-haul transport aircraft research and development, the objective of this paper is to determine the performance and noise impact of short-haul transport aircraft designed with an advanced turboprop propulsion system. This propulsion system features high-speed propellers that have more blades and reduced diameters. Aircraft are designed for short and medium field lengths; mission block fuel and direct operating costs (DOC) are used as performance measures. The propeller diameter was optimized to minimize DOC. Two methods are employed to estimate the weight of the acoustic treatment needed to reduce interior noise to an acceptable level. Results show decreasing gross weight, block fuel, DOC, engine size, and optimum propfan diameter with increasing field length. The choice of acoustic treatment method has a significant effect on the aircraft design.

INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.

PubMed

Busch, Anke; Backofen, Rolf

2007-07-01

INFO-RNA is a new web server for designing RNA sequences that fold into a user given secondary structure. Furthermore, constraints on the sequence can be specified, e.g. one can restrict sequence positions to a fixed nucleotide or to a set of nucleotides. Moreover, the user can allow violations of the constraints at some positions, which can be advantageous in complicated cases. The INFO-RNA web server allows biologists to design RNA sequences in an automatic manner. It is clearly and intuitively arranged and easy to use. The procedure is fast, as most applications are completed within seconds and it proceeds better and faster than other existing tools. The INFO-RNA web server is freely available at http://www.bioinf.uni-freiburg.de/Software/INFO-RNA/

INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints

PubMed Central

Busch, Anke; Backofen, Rolf

2007-01-01

INFO-RNA is a new web server for designing RNA sequences that fold into a user given secondary structure. Furthermore, constraints on the sequence can be specified, e.g. one can restrict sequence positions to a fixed nucleotide or to a set of nucleotides. Moreover, the user can allow violations of the constraints at some positions, which can be advantageous in complicated cases. The INFO-RNA web server allows biologists to design RNA sequences in an automatic manner. It is clearly and intuitively arranged and easy to use. The procedure is fast, as most applications are completed within seconds and it proceeds better and faster than other existing tools. The INFO-RNA web server is freely available at http://www.bioinf.uni-freiburg.de/Software/INFO-RNA/ PMID:17452349

A Web Terminology Server Using UMLS for the Description of Medical Procedures

PubMed Central

Burgun, Anita; Denier, Patrick; Bodenreider, Olivier; Botti, Geneviève; Delamarre, Denis; Pouliquen, Bruno; Oberlin, Philippe; Lévéque, Jean M.; Lukacs, Bertrand; Kohler, François; Fieschi, Marius; Le Beux, Pierre

1997-01-01

Abstract The Model for Assistance in the Orientation of a User within Coding Systems (MAOUSSC) project has been designed to provide a representation for medical and surgical procedures that allows several applications to be developed from several viewpoints. It is based on a conceptual model, a controlled set of terms, and Web server development. The design includes the UMLS knowledge sources associated with additional knowledge about medico-surgical procedures. The model was implemented using a relational database. The authors developed a complete interface for the Web presentation, with the intermediary layer being written in PERL. The server has been used for the representation of medico-surgical procedures that occur in the discharge summaries of the national survey of hospital activities that is performed by the French Health Statistics Agency in order to produce inpatient profiles. The authors describe the current status of the MAOUSSC server and discuss their interest in using such a server to assist in the coordination of terminology tasks and in the sharing of controlled terminologies. PMID:9292841

The DICOM-based radiation therapy information system

NASA Astrophysics Data System (ADS)

Law, Maria Y. Y.; Chan, Lawrence W. C.; Zhang, Xiaoyan; Zhang, Jianguo

2004-04-01

Similar to DICOM for PACS (Picture Archiving and Communication System), standards for radiotherapy (RT) information have been ratified with seven DICOM-RT objects and their IODs (Information Object Definitions), which are more than just images. This presentation describes how a DICOM-based RT Information System Server can be built based on the PACS technology and its data model for a web-based distribution. Methods: The RT information System consists of a Modality Simulator, a data format translator, a RT Gateway, the DICOM RT Server, and the Web-based Application Server. The DICOM RT Server was designed based on a PACS data model and was connected to a Web application Server for distribution of the RT information including therapeutic plans, structures, dose distribution, images and records. Various DICOM RT objects of the patient transmitted to the RT Server were routed to the Web Application Server where the contents of the DICOM RT objects were decoded and mapped to the corresponding location of the RT data model for display in the specially-designed Graphic User Interface. The non-DICOM objects were first rendered to DICOM RT Objects in the translator before they were sent to the RT Server. Results: Ten clinical cases have been collected from different hopsitals for evaluation of the DICOM-based RT Information System. They were successfully routed through the data flow and displayed in the client workstation of the RT information System. Conclusion: Using the DICOM-RT standards, integration of RT data from different vendors is possible.

An exploration of the potential impact of the designated driver campaign on bartenders' willingness to over-serve.

PubMed

Reiling, Denise M; Nusbaumer, Michael R

2007-12-01

Much has been written about the impact of the presence of a designated driver on patrons' consumption, but heretofore, its impact on the behaviour of the server has been virtually ignored. The goal of this paper, then, was to explore the potential impact of the presence of a designated driver on alcoholic beverage servers' self-reported willingness to knowingly serve an already intoxicated customer. chi(2) analysis of survey data collected from 938 licensed servers, in the state of Indiana, USA, was performed. Approximately 43% of the bartenders surveyed reported that they either would be or might be willing to over-serve an already intoxicated customer. Of those who answered the follow-up question as to under what conditions they would be willing to over-serve, almost 80% reported that they would do so if the patron were accompanied by a designated driver. The statistical significance of the relationship between these two variables (.000) raises the question of whether the Designated Driver Campaign has the latent function of enabling some servers to neutralize their responsibility for over-serving by disregarding other types of intoxication-related harm.

Interfacing a high performance disk array file server to a Gigabit LAN

NASA Technical Reports Server (NTRS)

Seshan, Srinivasan; Katz, Randy H.

1993-01-01

Our previous prototype, RAID-1, identified several bottlenecks in typical file server architectures. The most important bottleneck was the lack of a high-bandwidth path between disk, memory, and the network. Workstation servers, such as the Sun-4/280, have very slow access to peripherals on busses far from the CPU. For the RAID-2 system, we addressed this problem by designing a crossbar interconnect, Xbus board, that provides a 40MB/s path between disk, memory, and the network interfaces. However, this interconnect does not provide the system CPU with low latency access to control the various interfaces. To provide a high data rate to clients on the network, we were forced to carefully and efficiently design the network software. A block diagram of the system hardware architecture is given. In the following subsections, we describe pieces of the RAID-2 file server hardware that had a significant impact on the design of the network interface.

[Design and implementation of medical instrument standard information retrieval system based on APS.NET].

PubMed

Yu, Kaijun

2010-07-01

This paper Analys the design goals of Medical Instrumentation standard information retrieval system. Based on the B /S structure,we established a medical instrumentation standard retrieval system with ASP.NET C # programming language, IIS f Web server, SQL Server 2000 database, in the. NET environment. The paper also Introduces the system structure, retrieval system modules, system development environment and detailed design of the system.

Secure Server Login by Using Third Party and Chaotic System

NASA Astrophysics Data System (ADS)

Abdulatif, Firas A.; zuhiar, Maan

2018-05-01

Server is popular among all companies and it used by most of them but due to the security threat on the server make this companies are concerned when using it so that in this paper we will design a secure system based on one time password and third parity authentication (smart phone). The proposed system make security to the login process of server by using one time password to authenticate person how have permission to login and third parity device (smart phone) as other level of security.

Data warehousing with Oracle

NASA Astrophysics Data System (ADS)

Shahzad, Muhammad A.

1999-02-01

With the emergence of data warehousing, Decision support systems have evolved to its best. At the core of these warehousing systems lies a good database management system. Database server, used for data warehousing, is responsible for providing robust data management, scalability, high performance query processing and integration with other servers. Oracle being the initiator in warehousing servers, provides a wide range of features for facilitating data warehousing. This paper is designed to review the features of data warehousing - conceptualizing the concept of data warehousing and, lastly, features of Oracle servers for implementing a data warehouse.

Client - server programs analysis in the EPOCA environment

NASA Astrophysics Data System (ADS)

Donatelli, Susanna; Mazzocca, Nicola; Russo, Stefano

1996-09-01

Client - server processing is a popular paradigm for distributed computing. In the development of client - server programs, the designer has first to ensure that the implementation behaves correctly, in particular that it is deadlock free. Second, he has to guarantee that the program meets predefined performance requirements. This paper addresses the issues in the analysis of client - server programs in EPOCA. EPOCA is a computer-aided software engeneering (CASE) support system that allows the automated construction and analysis of generalized stochastic Petri net (GSPN) models of concurrent applications. The paper describes, on the basis of a realistic case study, how client - server systems are modelled in EPOCA, and the kind of qualitative and quantitative analysis supported by its tools.

Challenges in the Development and Evolution of Secure Open Architecture Command and Control Systems (Briefing Charts)

DTIC Science & Technology

2013-06-01

widgets for an OA system Design-time architecture: Browser, email, widget, DB, OS Go ogle Instance architecture: Chrome, Gmail, Google...provides functionally similar components or applications compatible with an OA system design Firefox Browser, WP, calendar Opera Instance...architecture: Firefox , AbiWord, Evolution, Fedora GPL Ab1Word Google Docs Instance ardlitecture: Fire fox, OR Google cal., Google Docs, Fedora

Design for an integrated discipline operations control center for Space Station Freedom

NASA Technical Reports Server (NTRS)

Haines, Richard F.

1993-01-01

This paper presents selected features of a human factors oriented plan for a Space Station Freedom (SSF) ground Discipline Operations Center (DOC) that is integrated with other work areas used by multidisciplinary life scientists. This combined facility is referred to as an integrated DOC or IDOC. This plan is based upon the assumption that there will be a constantly changing array of specialized equipment and procedures used by life sciences principal investigators (PI) on the ground which must be linked to SSF through various DOC systems. Other sites will also be able to communicate with SSF (Anon., 1992). It is also assumed that cost reduction will be a major design consideration and that one integrated structure will be less expensive to build and operate than two separate ones. Since both the DOC personnel and PIs will need to communicate with the flight crew aboard SSF, the general interconnect architecture of the PIs' communication linkage is considered here. Key human factor design elements of this plan include: a candidate facility layout which accommodates three (3), multipurpose, rapidly reconfigurable work areas (suites) and consequent user traffic flow considerations, a multimedia telecommunications support capability, functional (human) traffic flow, optimized internal illumination and acoustics requirements, selected volumetric and safety requirements, and other architectural design parameters.

Development and process evaluation of a Web-based responsible beverage service training program.

PubMed

Danaher, Brian G; Dresser, Jack; Shaw, Tracy; Severson, Herbert H; Tyler, Milagra S; Maxwell, Elisabeth D; Christiansen, Steve M

2012-09-22

Responsible beverage service (RBS) training designed to improve the appropriate service of alcohol in commercial establishments is typically delivered in workshops. Recently, Web-based RBS training programs have emerged. This report describes the formative development and subsequent design of an innovative Web-delivered RBS program, and evaluation of the impact of the program on servers' knowledge, attitudes, and self-efficacy. Formative procedures using focus groups and usability testing were used to develop a Web-based RBS training program. Professional alcohol servers (N = 112) who worked as servers and/or mangers in alcohol service settings were recruited to participate. A pre-post assessment design was used to assess changes associated with using the program. Participants who used the program showed significant improvements in their RBS knowledge, attitudes, and self-efficacy. Although the current study did not directly observe and determine impact of the intervention on server behaviors, it demonstrated that the development process incorporating input from a multidisciplinary team in conjunction with feedback from end-users resulted in creation of a Web-based RBS program that was well-received by servers and that changed relevant knowledge, attitudes, and self-efficacy. The results also help to establish a needed evidence base in support of the use of online RBS training, which has been afforded little research attention.

Assessment of potential climate change impacts on peatland dissolved organic carbon release and drinking water treatment from laboratory experiments.

PubMed

Tang, R; Clark, J M; Bond, T; Graham, N; Hughes, D; Freeman, C

2013-02-01

Catchments draining peat soils provide the majority of drinking water in the UK. Over the past decades, concentrations of dissolved organic carbon (DOC) have increased in surface waters. Residual DOC can cause harmful carcinogenic disinfection by-products to form during water treatment processes. Increased frequency and severity of droughts combined with and increased temperatures expected as the climate changes, have potentials to change water quality. We used a novel approach to investigate links between climate change, DOC release and subsequent effects on drinking water treatment. We designed a climate manipulation experiment to simulate projected climate changes and monitored releases from peat soil and litter, then simulated coagulation used in water treatment. We showed that the 'drought' simulation was the dominant factor altering DOC release and affected the ability to remove DOC. Our results imply that future short-term drought events could have a greater impact than increased temperature on DOC treatability. Copyright © 2012 Elsevier Ltd. All rights reserved.

16 CFR 803.10 - Running of time.

Code of Federal Regulations, 2011 CFR

2011-01-01

... effected to the server maintained by the FTC for the purpose of receiving electronic filings. (iii) For... server or the date on which delivery of the attachments is effected to the designated offices as provided...

Southern California Seismic Network: New Design and Implementation of Redundant and Reliable Real-time Data Acquisition Systems

NASA Astrophysics Data System (ADS)

Saleh, T.; Rico, H.; Solanki, K.; Hauksson, E.; Friberg, P.

2005-12-01

The Southern California Seismic Network (SCSN) handles more than 2500 high-data rate channels from more than 380 seismic stations distributed across southern California. These data are imported real-time from dataloggers, earthworm hubs, and partner networks. The SCSN also exports data to eight different partner networks. Both the imported and exported data are critical for emergency response and scientific research. Previous data acquisition systems were complex and difficult to operate, because they grew in an ad hoc fashion to meet the increasing needs for distributing real-time waveform data. To maximize reliability and redundancy, we apply best practices methods from computer science for implementing the software and hardware configurations for import, export, and acquisition of real-time seismic data. Our approach makes use of failover software designs, methods for dividing labor diligently amongst the network nodes, and state of the art networking redundancy technologies. To facilitate maintenance and daily operations we seek to provide some separation between major functions such as data import, export, acquisition, archiving, real-time processing, and alarming. As an example, we make waveform import and export functions independent by operating them on separate servers. Similarly, two independent servers provide waveform export, allowing data recipients to implement their own redundancy. The data import is handled differently by using one primary server and a live backup server. These data import servers, run fail-over software that allows automatic role switching in case of failure from primary to shadow. Similar to the classic earthworm design, all the acquired waveform data are broadcast onto a private network, which allows multiple machines to acquire and process the data. As we separate data import and export away from acquisition, we are also working on new approaches to separate real-time processing and rapid reliable archiving of real-time data. Further, improved network security is an integral part of the new design. Redundant firewalls will provide secure data imports, exports, and acquisition as well as DMZ zones for web servers and other publicly available servers. We will present the detailed design of this new configuration that is currently being implemented by the SCSN at Caltech. The design principals are general enough to be of use to most regional seismic networks.

Thirty Meter Telescope (TMT) Narrow Field Infrared Adaptive Optics System (NFIRAOS) real-time controller preliminary architecture

NASA Astrophysics Data System (ADS)

Kerley, Dan; Smith, Malcolm; Dunn, Jennifer; Herriot, Glen; Véran, Jean-Pierre; Boyer, Corinne; Ellerbroek, Brent; Gilles, Luc; Wang, Lianqi

2016-08-01

The Narrow Field Infrared Adaptive Optics System (NFIRAOS) is the first light Adaptive Optics (AO) system for the Thirty Meter Telescope (TMT). A critical component of NFIRAOS is the Real-Time Controller (RTC) subsystem which provides real-time wavefront correction by processing wavefront information to compute Deformable Mirror (DM) and Tip/Tilt Stage (TTS) commands. The National Research Council of Canada - Herzberg (NRC-H), in conjunction with TMT, has developed a preliminary design for the NFIRAOS RTC. The preliminary architecture for the RTC is comprised of several Linux-based servers. These servers are assigned various roles including: the High-Order Processing (HOP) servers, the Wavefront Corrector Controller (WCC) server, the Telemetry Engineering Display (TED) server, the Persistent Telemetry Storage (PTS) server, and additional testing and spare servers. There are up to six HOP servers that accept high-order wavefront pixels, and perform parallelized pixel processing and wavefront reconstruction to produce wavefront corrector error vectors. The WCC server performs low-order mode processing, and synchronizes and aggregates the high-order wavefront corrector error vectors from the HOP servers to generate wavefront corrector commands. The Telemetry Engineering Display (TED) server is the RTC interface to TMT and other subsystems. The TED server receives all external commands and dispatches them to the rest of the RTC servers and is responsible for aggregating several offloading and telemetry values that are reported to other subsystems within NFIRAOS and TMT. The TED server also provides the engineering GUIs and real-time displays. The Persistent Telemetry Storage (PTS) server contains fault tolerant data storage that receives and stores telemetry data, including data for Point-Spread Function Reconstruction (PSFR).

Rapid HIS, RIS, PACS Integration Using Graphical CASE Tools

NASA Astrophysics Data System (ADS)

Taira, Ricky K.; Breant, Claudine M.; Stepczyk, Frank M.; Kho, Hwa T.; Valentino, Daniel J.; Tashima, Gregory H.; Materna, Anthony T.

1994-05-01

We describe the clinical requirements of the integrated federation of databases and present our client-mediator-server design. The main body of the paper describes five important aspects of integrating information systems: (1) global schema design, (2) establishing sessions with remote database servers, (3) development of schema translators, (4) integration of global system triggers, and (5) development of job workflow scripts.

Requirements for a network storage service

NASA Technical Reports Server (NTRS)

Kelly, Suzanne M.; Haynes, Rena A.

1991-01-01

Sandia National Laboratories provides a high performance classified computer network as a core capability in support of its mission of nuclear weapons design and engineering, physical sciences research, and energy research and development. The network, locally known as the Internal Secure Network (ISN), comprises multiple distributed local area networks (LAN's) residing in New Mexico and California. The TCP/IP protocol suite is used for inter-node communications. Scientific workstations and mid-range computers, running UNIX-based operating systems, compose most LAN's. One LAN, operated by the Sandia Corporate Computing Computing Directorate, is a general purpose resource providing a supercomputer and a file server to the entire ISN. The current file server on the supercomputer LAN is an implementation of the Common File Server (CFS). Subsequent to the design of the ISN, Sandia reviewed its mass storage requirements and chose to enter into a competitive procurement to replace the existing file server with one more adaptable to a UNIX/TCP/IP environment. The requirements study for the network was the starting point for the requirements study for the new file server. The file server is called the Network Storage Service (NSS) and its requirements are described. An application or functional description of the NSS is given. The final section adds performance, capacity, and access constraints to the requirements.

An ECG storage and retrieval system embedded in client server HIS utilizing object-oriented DB.

PubMed

Wang, C; Ohe, K; Sakurai, T; Nagase, T; Kaihara, S

1996-02-01

In the University of Tokyo Hospital, the improved client server HIS has been applied to clinical practice and physicians can order prescription, laboratory examination, ECG examination and radiographic examination, etc. directly by themselves and read results of these examinations, except medical signal waves, schema and image, on UNIX workstations. Recently, we designed and developed an ECG storage and retrieval system embedded in the client server HIS utilizing object-oriented database to take the first step in dealing with digitized signal, schema and image data and show waves, graphics, and images directly to physicians by the client server HIS. The system was developed based on object-oriented analysis and design, and implemented with object-oriented database management system (OODMS) and C++ programming language. In this paper, we describe the ECG data model, functions of the storage and retrieval system, features of user interface and the result of its implementation in the HIS.

Method for a dummy CD mirror server based on NAS

NASA Astrophysics Data System (ADS)

Tang, Muna; Pei, Jing

2002-09-01

With the development of computer network, information sharing is becoming the necessity in human life. The rapid development of CD-ROM and CD-ROM driver techniques makes it possible to issue large database online. After comparing many designs of dummy CD mirror database, which are the embodiment of a main product in CD-ROM database now and in near future, we proposed and realized a new PC based scheme. Our system has the following merits, such as, supporting all kinds of CD format; supporting many network protocol; the independence of mirror network server and the main server; low price, super large capacity, without the need of any special hardware. Preliminarily experiments have verified the validity of the proposed scheme. Encouraged by the promising application future, we are now preparing to put it into market. This paper discusses the design and implement of the CD-ROM server detailedly.

MODBUS APPLICATION AT JEFFERSON LAB

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, Jianxun; Seaton, Chad; Philip, Sarin

Modbus is a client/server communication model. In our applications, the embedded Ethernet device XPort is designed as the server and a SoftIOC running EPICS Modbus is the client. The SoftIOC builds a Modbus request from parameter contained in a demand that is sent by the EPICS application to the Modbus Client interface. On reception of the Modbus request, the Modbus server activates a local action to read, write, or achieve some other action. So, the main Modbus server functions are to wait for a Modbus request on 502 TCP port, treat this request, and then build a Modbus response.

Development of a Mobile User Interface for Image-based Dietary Assessment.

PubMed

Kim, Sungye; Schap, Tusarebecca; Bosch, Marc; Maciejewski, Ross; Delp, Edward J; Ebert, David S; Boushey, Carol J

2010-12-31

In this paper, we present a mobile user interface for image-based dietary assessment. The mobile user interface provides a front end to a client-server image recognition and portion estimation software. In the client-server configuration, the user interactively records a series of food images using a built-in camera on the mobile device. Images are sent from the mobile device to the server, and the calorie content of the meal is estimated. In this paper, we describe and discuss the design and development of our mobile user interface features. We discuss the design concepts, through initial ideas and implementations. For each concept, we discuss qualitative user feedback from participants using the mobile client application. We then discuss future designs, including work on design considerations for the mobile application to allow the user to interactively correct errors in the automatic processing while reducing the user burden associated with classical pen-and-paper dietary records.

FireProt: web server for automated design of thermostable proteins

PubMed Central

Musil, Milos; Stourac, Jan; Brezovsky, Jan; Prokop, Zbynek; Zendulka, Jaroslav; Martinek, Tomas

2017-01-01

Abstract There is a continuous interest in increasing proteins stability to enhance their usability in numerous biomedical and biotechnological applications. A number of in silico tools for the prediction of the effect of mutations on protein stability have been developed recently. However, only single-point mutations with a small effect on protein stability are typically predicted with the existing tools and have to be followed by laborious protein expression, purification, and characterization. Here, we present FireProt, a web server for the automated design of multiple-point thermostable mutant proteins that combines structural and evolutionary information in its calculation core. FireProt utilizes sixteen tools and three protein engineering strategies for making reliable protein designs. The server is complemented with interactive, easy-to-use interface that allows users to directly analyze and optionally modify designed thermostable mutants. FireProt is freely available at http://loschmidt.chemi.muni.cz/fireprot. PMID:28449074

Degrees of connectivity: Systems model for upstream risk assessment and mitigation.

PubMed

Gambatese, John; AlOmari, Kasim

2016-08-01

There is growing recognition that in order to further improve safety performance, attention needs to be given beyond the immediate working conditions and worker actions. A systems approach to construction safety enables considering: multiple project elements simultaneously; connections between different elements; and all system elements affected by safety risk. This paper describes recent and current research to conceptualize a typical building project in terms of connections between workers, activities, and design elements, and to verify and analyze impacts of the design and worker interactions on worker safety. Prior research provides the basis for a network tying the design elements, construction activities, and work crews on a typical building project together along with the extent of interaction between each of the system elements in terms of safety. In conjunction with this systems approach, the researchers propose a concept for viewing and managing construction safety through four different types of connections, or "degrees of connectivity," between the different workers, activities, and design elements in the system. The degrees of connectivity are defined as: interacting with the design element during its construction (DoC #1); interacting with the design element in its final form to attach another component to it (DoC #2) or by working in the vicinity of it (DoC #3); and indirectly interacting with the design element through another worker (DoC #4). To support and verify the presence of the concept in practice, the researchers conducted a survey of construction personnel. The survey results confirm that the four different degrees of connectivity are present and felt during construction operations, and indicate that attention should be given to all design elements, activities, and workers to which a worker is "connected". According to the survey respondents, DoC's #1 and #2 are recognized as the most widely present on construction sites. Eighty percent of the respondents believe that the design element has a moderate or greater impact on worker safety while it is being constructed. These initial research steps provide the starting point for continuing study that aims to develop and demonstrate the degrees of connectivity concept linking workers and design elements, with the goal of understanding how to design a project and work operations in order to improve safety during construction. Copyright © 2015 Elsevier Ltd. All rights reserved.

Sirocco Storage Server v. pre-alpha 0.1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Curry, Matthew L.; Danielson, Geoffrey; Ward, H. Lee

Sirocco is a parallel storage system under development, designed for write-intensive workloads on large-scale HPC platforms. It implements a keyvalue object store on top of a set of loosely federated storage servers that cooperate to ensure data integrity and performance. It includes support for a range of different types of storage transactions. This software release constitutes a conformant storage server, along with the client-side libraries to access the storage over a network.

Comparing Server Energy Use and Efficiency Using Small Sample Sizes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Coles, Henry C.; Qin, Yong; Price, Phillip N.

This report documents a demonstration that compared the energy consumption and efficiency of a limited sample size of server-type IT equipment from different manufacturers by measuring power at the server power supply power cords. The results are specific to the equipment and methods used. However, it is hoped that those responsible for IT equipment selection can used the methods described to choose models that optimize energy use efficiency. The demonstration was conducted in a data center at Lawrence Berkeley National Laboratory in Berkeley, California. It was performed with five servers of similar mechanical and electronic specifications; three from Intel andmore » one each from Dell and Supermicro. Server IT equipment is constructed using commodity components, server manufacturer-designed assemblies, and control systems. Server compute efficiency is constrained by the commodity component specifications and integration requirements. The design freedom, outside of the commodity component constraints, provides room for the manufacturer to offer a product with competitive efficiency that meets market needs at a compelling price. A goal of the demonstration was to compare and quantify the server efficiency for three different brands. The efficiency is defined as the average compute rate (computations per unit of time) divided by the average energy consumption rate. The research team used an industry standard benchmark software package to provide a repeatable software load to obtain the compute rate and provide a variety of power consumption levels. Energy use when the servers were in an idle state (not providing computing work) were also measured. At high server compute loads, all brands, using the same key components (processors and memory), had similar results; therefore, from these results, it could not be concluded that one brand is more efficient than the other brands. The test results show that the power consumption variability caused by the key components as a group is similar to all other components as a group. However, some differences were observed. The Supermicro server used 27 percent more power at idle compared to the other brands. The Intel server had a power supply control feature called cold redundancy, and the data suggest that cold redundancy can provide energy savings at low power levels. Test and evaluation methods that might be used by others having limited resources for IT equipment evaluation are explained in the report.« less

Requirements for a network storage service

NASA Technical Reports Server (NTRS)

Kelly, Suzanne M.; Haynes, Rena A.

1992-01-01

Sandia National Laboratories provides a high performance classified computer network as a core capability in support of its mission of nuclear weapons design and engineering, physical sciences research, and energy research and development. The network, locally known as the Internal Secure Network (ISN), was designed in 1989 and comprises multiple distributed local area networks (LAN's) residing in Albuquerque, New Mexico and Livermore, California. The TCP/IP protocol suite is used for inner-node communications. Scientific workstations and mid-range computers, running UNIX-based operating systems, compose most LAN's. One LAN, operated by the Sandia Corporate Computing Directorate, is a general purpose resource providing a supercomputer and a file server to the entire ISN. The current file server on the supercomputer LAN is an implementation of the Common File System (CFS) developed by Los Alamos National Laboratory. Subsequent to the design of the ISN, Sandia reviewed its mass storage requirements and chose to enter into a competitive procurement to replace the existing file server with one more adaptable to a UNIX/TCP/IP environment. The requirements study for the network was the starting point for the requirements study for the new file server. The file server is called the Network Storage Services (NSS) and is requirements are described in this paper. The next section gives an application or functional description of the NSS. The final section adds performance, capacity, and access constraints to the requirements.

The Design and Implementation of a Low Cost and High Security Smart Home System Based on Wi-Fi and SSL Technologies

NASA Astrophysics Data System (ADS)

Xu, Chong-Yao; Zheng, Xin; Xiong, Xiao-Ming

2017-02-01

With the development of Internet of Things (IoT) and the popularity of intelligent mobile terminals, smart home system has come into people’s vision. However, due to the high cost, complex installation and inconvenience, as well as network security issues, smart home system has not been popularized. In this paper, combined with Wi-Fi technology, Android system, cloud server and SSL security protocol, a new set of smart home system is designed, with low cost, easy operation, high security and stability. The system consists of Wi-Fi smart node (WSN), Android client and cloud server. In order to reduce system cost and complexity of the installation, each Wi-Fi transceiver, appliance control logic and data conversion in the WSN is setup by a single chip. In addition, all the data of the WSN can be uploaded to the server through the home router, without having to transit through the gateway. All the appliance status information and environmental information are preserved in the cloud server. Furthermore, to ensure the security of information, the Secure Sockets Layer (SSL) protocol is used in the WSN communication with the server. What’s more, to improve the comfort and simplify the operation, Android client is designed with room pattern to control home appliances more realistic, and more convenient.

The Stanford MediaServer Project: strategies for building a flexible digital media platform to support biomedical education and research.

PubMed Central

Durack, Jeremy C.; Chao, Chih-Chien; Stevenson, Derek; Andriole, Katherine P.; Dev, Parvati

2002-01-01

Medical media collections are growing at a pace that exceeds the value they currently provide as research and educational resources. To address this issue, the Stanford MediaServer was designed to promote innovative multimedia-based application development. The nucleus of the MediaServer platform is a digital media database strategically designed to meet the information needs of many biomedical disciplines. Key features include an intuitive web-based interface for collaboratively populating the media database, flexible creation of media collections for diverse and specialized purposes, and the ability to construct a variety of end-user applications from the same database to support biomedical education and research. PMID:12463820

The Stanford MediaServer Project: strategies for building a flexible digital media platform to support biomedical education and research.

PubMed

Durack, Jeremy C; Chao, Chih-Chien; Stevenson, Derek; Andriole, Katherine P; Dev, Parvati

2002-01-01

Medical media collections are growing at a pace that exceeds the value they currently provide as research and educational resources. To address this issue, the Stanford MediaServer was designed to promote innovative multimedia-based application development. The nucleus of the MediaServer platform is a digital media database strategically designed to meet the information needs of many biomedical disciplines. Key features include an intuitive web-based interface for collaboratively populating the media database, flexible creation of media collections for diverse and specialized purposes, and the ability to construct a variety of end-user applications from the same database to support biomedical education and research.

An efficient biometric and password-based remote user authentication using smart card for Telecare Medical Information Systems in multi-server environment.

PubMed

Maitra, Tanmoy; Giri, Debasis

2014-12-01

The medical organizations have introduced Telecare Medical Information System (TMIS) to provide a reliable facility by which a patient who is unable to go to a doctor in critical or urgent period, can communicate to a doctor through a medical server via internet from home. An authentication mechanism is needed in TMIS to hide the secret information of both parties, namely a server and a patient. Recent research includes patient's biometric information as well as password to design a remote user authentication scheme that enhances the security level. In a single server environment, one server is responsible for providing services to all the authorized remote patients. However, the problem arises if a patient wishes to access several branch servers, he/she needs to register to the branch servers individually. In 2014, Chuang and Chen proposed an remote user authentication scheme for multi-server environment. In this paper, we have shown that in their scheme, an non-register adversary can successfully logged-in into the system as a valid patient. To resist the weaknesses, we have proposed an authentication scheme for TMIS in multi-server environment where the patients can register to a root telecare server called registration center (RC) in one time to get services from all the telecare branch servers through their registered smart card. Security analysis and comparison shows that our proposed scheme provides better security with low computational and communication cost.

Informatics in radiology (infoRAD): A complete continuous-availability PACS archive server.

PubMed

Liu, Brent J; Huang, H K; Cao, Fei; Zhou, Michael Z; Zhang, Jianguo; Mogel, Greg

2004-01-01

The operational reliability of the picture archiving and communication system (PACS) server in a filmless hospital environment is always a major concern because server failure could cripple the entire PACS operation. A simple, low-cost, continuous-availability (CA) PACS archive server was designed and developed. The server makes use of a triple modular redundancy (TMR) system with a simple majority voting logic that automatically identifies a faulty module and removes it from service. The remaining two modules continue normal operation with no adverse effects on data flow or system performance. In addition, the server is integrated with two external mass storage devices for short- and long-term storage. Evaluation and testing of the server were conducted with laboratory experiments in which hardware failures were simulated to observe recovery time and the resumption of normal data flow. The server provides maximum uptime (99.999%) for end users while ensuring the transactional integrity of all clinical PACS data. Hardware failure has only minimal impact on performance, with no interruption of clinical data flow or loss of data. As hospital PACS become more widespread, the need for CA PACS solutions will increase. A TMR CA PACS archive server can reliably help achieve CA in this setting. Copyright RSNA, 2004

Evaluating the impacts of landscape positions and nitrogen fertilizer rates on dissolved organic carbon on switchgrass land seeded on marginally yielding cropland.

PubMed

Lai, Liming; Kumar, Sandeep; Mbonimpa, Eric G; Hong, Chang Oh; Owens, Vance N; Neupane, Ram P

2016-04-15

Dissolved organic carbon (DOC) through leaching into the soils is another mechanism of net C loss. It plays an important role in impacting the environment and impacted by soil and crop management practices. However, little is known about the impacts of landscape positions and nitrogen (N) fertilizer rates on DOC leaching in switchgrass (Panicum virgatum L.). This experimental design included three N fertilizer rates [0 (low); 56 (medium); 112 (high) kg N ha(-1)] and three landscape positions (shoulder, backslope and footslope). Daily average DOC contents at backslope were significantly lower than that at shoulder and footslope. The DOC contents from the plots that received medium N rate were also significantly lower than the plots that received low N rates. The interactions of landscape and N rates on DOC contents were different in every year from 2009 to 2014, however, no significant consistent trend of DOC contents was observed over time. Annual average DOC contents from the plots managed with low N rate were higher than those with high N rate. These contents at the footslope were higher than that at the shoulder position. Data show that there is a moderate positive relationship between the total average DOC contents and the total average switchgrass biomass yields. Overall, the DOC contents from leachate in the switchgrass land were significantly influenced by landscape positions and N rates. The N fertilization reduced DOC leaching contents in switchgrass field. The switchgrass could retain soil and environment sustainability to some extent. These findings will assist in understanding the mechanism of changes in DOC contents with various parameters in the natural environment and crop management systems. However, use of long-term data might help to better assess the effects of above factors on DOC leaching contents and loss in the switchgrass field in the future. Copyright © 2016 Elsevier Ltd. All rights reserved.

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.

PubMed

Bonnet, Eric; He, Ying; Billiau, Kenny; Van de Peer, Yves

2010-06-15

We present a new web server called TAPIR, designed for the prediction of plant microRNA targets. The server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA-target duplexes. Furthermore, the precise option allows the prediction of target mimics, which are characterized by a miRNA-target duplex having a large loop, making them undetectable by traditional tools. The TAPIR web server can be accessed at: http://bioinformatics.psb.ugent.be/webtools/tapir. Supplementary data are available at Bioinformatics online.

ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures.

PubMed

Chang, Darby Tien-Hau; Chen, Chien-Yu; Chung, Wen-Chin; Oyang, Yen-Jen; Juan, Hsueh-Fen; Huang, Hsuan-Cheng

2004-07-01

Analysis of protein-ligand interactions is a fundamental issue in drug design. As the detailed and accurate analysis of protein-ligand interactions involves calculation of binding free energy based on thermodynamics and even quantum mechanics, which is highly expensive in terms of computing time, conformational and structural analysis of proteins and ligands has been widely employed as a screening process in computer-aided drug design. In this paper, a web server called ProteMiner-SSM designed for efficient analysis of similar protein tertiary substructures is presented. In one experiment reported in this paper, the web server has been exploited to obtain some clues about a biochemical hypothesis. The main distinction in the software design of the web server is the filtering process incorporated to expedite the analysis. The filtering process extracts the residues located in the caves of the protein tertiary structure for analysis and operates with O(nlogn) time complexity, where n is the number of residues in the protein. In comparison, the alpha-hull algorithm, which is a widely used algorithm in computer graphics for identifying those instances that are on the contour of a three-dimensional object, features O(n2) time complexity. Experimental results show that the filtering process presented in this paper is able to speed up the analysis by a factor ranging from 3.15 to 9.37 times. The ProteMiner-SSM web server can be found at http://proteminer.csie.ntu.edu.tw/. There is a mirror site at http://p4.sbl.bc.sinica.edu.tw/proteminer/.

Designing and Implementation of River Classification Assistant Management System

NASA Astrophysics Data System (ADS)

Zhao, Yinjun; Jiang, Wenyuan; Yang, Rujun; Yang, Nan; Liu, Haiyan

2018-03-01

In an earlier publication, we proposed a new Decision Classifier (DCF) for Chinese river classification based on their structures. To expand, enhance and promote the application of the DCF, we build a computer system to support river classification named River Classification Assistant Management System. Based on ArcEngine and ArcServer platform, this system implements many functions such as data management, extraction of river network, river classification, and results publication under combining Client / Server with Browser / Server framework.

Addressing the expected survival benefit for clinical trial design in metastatic castration-resistant prostate cancer: Sensitivity analysis of randomized trials.

PubMed

Massari, Francesco; Modena, Alessandra; Ciccarese, Chiara; Pilotto, Sara; Maines, Francesca; Bracarda, Sergio; Sperduti, Isabella; Giannarelli, Diana; Carlini, Paolo; Santini, Daniele; Tortora, Giampaolo; Porta, Camillo; Bria, Emilio

2016-02-01

We performed a sensitivity analysis, cumulating all randomized clinical trials (RCTs) in which patients with metastatic castration-resistant prostate cancer (mCRPC) received systemic therapy, to evaluate if the comparison of RCTs may drive to biased survival estimations. An overall survival (OS) significant difference according to therapeutic strategy was more likely be determined in RCTs evaluating hormonal drugs versus those studies testing immunotherapy, chemotherapy or other strategies. With regard to control arm, an OS significant effect was found for placebo-controlled trials versus studies comparing experimental treatment with active therapies. Finally, regarding to docetaxel (DOC) timing, the OS benefit was more likely to be proved in Post-DOC setting in comparison with DOC and Pre-DOC. These data suggest that clinical trial design should take into account new benchmarks such as the type of treatment strategy, the choice of the comparator and the phase of the disease in relation to the administration of standard chemotherapy. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

75 FR 47609 - U.S. Customs and Border Protection; Notice of Issuance of Final Determination Concerning a...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-06

... Denver, Colorado. Communication Manager is designed to run on a variety of Linux-based media servers.... Some servers are in the form of blades. These are cards (similar to printed circuit cards with...

Greenland Ice Sheet exports labile organic carbon to the Arctic oceans

NASA Astrophysics Data System (ADS)

Lawson, E. C.; Wadham, J. L.; Tranter, M.; Stibal, M.; Lis, G. P.; Butler, C. E. H.; Laybourn-Parry, J.; Nienow, P.; Chandler, D.; Dewsbury, P.

2013-12-01

Runoff from small glacier systems contains dissolved organic carbon (DOC), rich in protein-like, low molecular weight (LMW) compounds, designating glaciers as an important source of bioavailable carbon for downstream heterotrophic activity. Fluxes of DOC and particulate organic carbon (POC) exported from large Greenland catchments, however, remain unquantified, despite the Greenland Ice Sheet (GrIS) being the largest source of global glacial runoff (ca. 400 km3 yr-1). We report high and episodic fluxes of POC and DOC from a large (1200 km2) GrIS catchment during contrasting melt seasons. POC dominates organic carbon (OC) export (70-89% on average), is sourced from the ice sheet bed and contains a significant bioreactive component (9% carbohydrates). A major source for the "bioavailable" (free carbohydrates) LMW-DOC fraction is microbial activity on the ice sheet surface, with some further addition of LMW-DOC to meltwaters by biogeochemical processes at the ice sheet bed. The bioavailability of the exported DOC (30-58%) to downstream marine microorganisms is similar to that reported from other glacial watersheds. Annual fluxes of DOC and free carbohydrates during two melt seasons were similar, despite the ~ 2 fold difference in runoff fluxes, suggesting production-limited DOC sources. POC fluxes were also insensitive to an increase in seasonal runoff volumes, indicating supply-limitation of suspended sediment in runoff. Scaled to the GrIS, the combined DOC and POC fluxes (0.13-0.17 Tg C yr-1 DOC, 0.36-1.52 Tg C yr-1 mean POC) are of a similar order of magnitude to a large Arctic river system, and hence represent an important OC source to the North Atlantic, Greenland and Labrador Seas.

In Situ Stoichiometry in a Large River: Continuous Measurement of Doc, NO3 and PO4 in the Sacramento River

NASA Astrophysics Data System (ADS)

Downing, B. D.; Pellerin, B. A.; Bergamaschi, B. A.; Saraceno, J.

2011-12-01

Studying controls on geochemical processes in rivers and streams is difficult because concentration and composition often changes rapidly in response to physical and biological forcings. Understanding biogeochemical dynamics in rivers will improve current understanding of the role of watershed sources to carbon cycling, river and stream ecology, and loads to estuaries and oceans. Continuous measurements of dissolved organic carbon (DOC), nitrate (NO3-) and soluble reactive phosphate (SRP) concentrations are now possible, along with some information about DOC composition. In situ sensors designed to measure these constituents provide high frequency, real-time data that can elucidate hydrologic and biogeochemical controls which are difficult to detect using more traditional sampling approaches. Here we present a coupled approach, using in situ optical instrumentation with discharge measurements to provide quantitative estimates of constituent loads to investigate C, NO3- and SRP sources and processing in the Sacramento River, CA, USA. Continuous measurement of DOC concentration was conducted by use of a miniature in situ fluorometer (Turner Designs Cyclops) designed to measure chromophoric dissolved organic matter fluorescence (FDOM) over the course of an entire year. Nitrate was measured concurrently using a Satlantic SUNA and phosphate was measured using a WETLabs model Cycle-P instrument for a two week period in July 2011. Continuous measurement from these instruments paired with continuous measurement of physical water quality variables such as temperature, pH, specific conductance, dissolved oxygen, and turbidity, were used to investigate physical and chemical dynamics of DOC, NO3-, SRP over varying time scales. Deploying these instruments at pre-existing USGS discharge gages allowed for calculation of instantaneous and integrated constituent fluxes, as well as filling in gaps in our understanding biogeochemical processes and transport. Results from the study show that diurnal, event driven and seasonal changes are key to calculating accurate watershed fluxes and detecting transient sources of DOC, NO3- and SRP.

MOD Tool (Microwave Optics Design Tool)

NASA Technical Reports Server (NTRS)

Katz, Daniel S.; Borgioli, Andrea; Cwik, Tom; Fu, Chuigang; Imbriale, William A.; Jamnejad, Vahraz; Springer, Paul L.

1999-01-01

The Jet Propulsion Laboratory (JPL) is currently designing and building a number of instruments that operate in the microwave and millimeter-wave bands. These include MIRO (Microwave Instrument for the Rosetta Orbiter), MLS (Microwave Limb Sounder), and IMAS (Integrated Multispectral Atmospheric Sounder). These instruments must be designed and built to meet key design criteria (e.g., beamwidth, gain, pointing) obtained from the scientific goals for the instrument. These criteria are frequently functions of the operating environment (both thermal and mechanical). To design and build instruments which meet these criteria, it is essential to be able to model the instrument in its environments. Currently, a number of modeling tools exist. Commonly used tools at JPL include: FEMAP (meshing), NASTRAN (structural modeling), TRASYS and SINDA (thermal modeling), MACOS/IMOS (optical modeling), and POPO (physical optics modeling). Each of these tools is used by an analyst, who models the instrument in one discipline. The analyst then provides the results of this modeling to another analyst, who continues the overall modeling in another discipline. There is a large reengineering task in place at JPL to automate and speed-up the structural and thermal modeling disciplines, which does not include MOD Tool. The focus of MOD Tool (and of this paper) is in the fields unique to microwave and millimeter-wave instrument design. These include initial design and analysis of the instrument without thermal or structural loads, the automation of the transfer of this design to a high-end CAD tool, and the analysis of the structurally deformed instrument (due to structural and/or thermal loads). MOD Tool is a distributed tool, with a database of design information residing on a server, physical optics analysis being performed on a variety of supercomputer platforms, and a graphical user interface (GUI) residing on the user's desktop computer. The MOD Tool client is being developed using Tcl/Tk, which allows the user to work on a choice of platforms (PC, Mac, or Unix) after downloading the Tcl/Tk binary, which is readily available on the web. The MOD Tool server is written using Expect, and it resides on a Sun workstation. Client/server communications are performed over a socket, where upon a connection from a client to the server, the server spawns a child which is be dedicated to communicating with that client. The server communicates with other machines, such as supercomputers using Expect with the username and password being provided by the user on the client.

WEB-server for search of a periodicity in amino acid and nucleotide sequences

NASA Astrophysics Data System (ADS)

E Frenkel, F.; Skryabin, K. G.; Korotkov, E. V.

2017-12-01

A new web server (http://victoria.biengi.ac.ru/splinter/login.php) was designed and developed to search for periodicity in nucleotide and amino acid sequences. The web server operation is based upon a new mathematical method of searching for multiple alignments, which is founded on the position weight matrices optimization, as well as on implementation of the two-dimensional dynamic programming. This approach allows the construction of multiple alignments of the indistinctly similar amino acid and nucleotide sequences that accumulated more than 1.5 substitutions per a single amino acid or a nucleotide without performing the sequences paired comparisons. The article examines the principles of the web server operation and two examples of studying amino acid and nucleotide sequences, as well as information that could be obtained using the web server.

Remote gaming on resource-constrained devices

NASA Astrophysics Data System (ADS)

Reza, Waazim; Kalva, Hari; Kaufman, Richard

2010-08-01

Games have become important applications on mobile devices. A mobile gaming approach known as remote gaming is being developed to support games on low cost mobile devices. In the remote gaming approach, the responsibility of rendering a game and advancing the game play is put on remote servers instead of the resource constrained mobile devices. The games rendered on the servers are encoded as video and streamed to mobile devices. Mobile devices gather user input and stream the commands back to the servers to advance game play. With this solution, mobile devices with video playback and network connectivity can become game consoles. In this paper we present the design and development of such a system and evaluate the performance and design considerations to maximize the end user gaming experience.

Development of a Mobile User Interface for Image-based Dietary Assessment

PubMed Central

Kim, SungYe; Schap, TusaRebecca; Bosch, Marc; Maciejewski, Ross; Delp, Edward J.; Ebert, David S.; Boushey, Carol J.

2011-01-01

In this paper, we present a mobile user interface for image-based dietary assessment. The mobile user interface provides a front end to a client-server image recognition and portion estimation software. In the client-server configuration, the user interactively records a series of food images using a built-in camera on the mobile device. Images are sent from the mobile device to the server, and the calorie content of the meal is estimated. In this paper, we describe and discuss the design and development of our mobile user interface features. We discuss the design concepts, through initial ideas and implementations. For each concept, we discuss qualitative user feedback from participants using the mobile client application. We then discuss future designs, including work on design considerations for the mobile application to allow the user to interactively correct errors in the automatic processing while reducing the user burden associated with classical pen-and-paper dietary records. PMID:24455755

Development of a Personal Digital Assistant (PDA) based client/server NICU patient data and charting system.

PubMed

Carroll, A E; Saluja, S; Tarczy-Hornoch, P

2001-01-01

Personal Digital Assistants (PDAs) offer clinicians the ability to enter and manage critical information at the point of care. Although PDAs have always been designed to be intuitive and easy to use, recent advances in technology have made them even more accessible. The ability to link data on a PDA (client) to a central database (server) allows for near-unlimited potential in developing point of care applications and systems for patient data management. Although many stand-alone systems exist for PDAs, none are designed to work in an integrated client/server environment. This paper describes the design, software and hardware selection, and preliminary testing of a PDA based patient data and charting system for use in the University of Washington Neonatal Intensive Care Unit (NICU). This system will be the subject of a subsequent study to determine its impact on patient outcomes and clinician efficiency.

A mobile water analysis laboratory for the study of stream nutrient and DOC dynamics

NASA Astrophysics Data System (ADS)

Echevarria Roman, Y.; Pullin, M. J.; Schwingle, R.; Gabrielsen, P. J.

2013-12-01

The dynamics of nutrient and dissolved organic carbon (DOC) quantity and composition in streams vary with season and in response to hydrologic events. Periodic grab sampling can capture some of this variation, but has also been shown to miss high flow events. Sampling during winter, during thunderstorms, and at night is difficult and sometimes hazardous. For these reasons, we have developed a mobile laboratory that autonomously determines pH, Eh, conductivity, dissolved oxygen, turbidity, nitrate, phosphate, DOC, DIC, as well as DOC fluorescence and absorbance continuously on a minutes timescale. The laboratory includes a Labview operated computer system that allows remote control and interaction with pumps, pressure, temperature, and flow sensors as well as the analytical instruments. Climate control allows for operation in winter. The design and operation of this laboratory will be presented. We will also discuss example data showing diurnal changes and responses to hydrologic events in DOC quantity and quality in the East Fork of the Jemez River, New Mexico.

Designing a Dynamic Data Driven Application System for Estimating Real-Time Load of DOC in a River

NASA Astrophysics Data System (ADS)

Ouyang, Y.; None

2011-12-01

Understanding the dynamics of naturally occurring dissolved organic carbon (DOC) in a river is central to estimating surface water quality, aquatic carbon cycling, and climate change. Currently, determination of DOC in surface water is primarily accomplished by manually collecting samples for laboratory analysis, which requires at least 24 hours. In other words, no effort has been devoted to monitoring real-time variations of DOC in a river due to the lack of suitable and/or cost-effective wireless sensors. However, when considering human health, carbon footprints, and effects of urbanization, industry, and agriculture on water resource supply, timely DOC information may be critical. We have developed here a new paradigm, a dynamic data driven application system (DDDAS), for estimating the real-time load of DOC into a river. This DDDAS consisted of the following four components: (1) a Visual Basic (VB) program for downloading US Geological Survey real-time chlorophyll and discharge data; (2) a STELLA model for evaluating real-time DOC load based on the relationship between chlorophyll a, DOC, and river discharge; (3) a batch file for linking the VB program and STELLA model; and (4) a Microsoft Windows Scheduled Tasks wizard for executing the model and displaying output on a computer screen at selected times. Results show that the real-time load of DOC into the St. Johns River basin near Satsuma, Putnam County, Florida, USA varied over a range from -13,143 to 29,248 kg/h at the selected site in Florida, USA. The negative loads occurred because of the back flow in the estuarine reach of the river. The cumulative load of DOC in the river for the selected site at the end of the simulation (178 hours) was about 1.2 tons. Our results support the utility of the DDDAS developed in this study for estimating the real-time variations of DOC in river ecosystems.

Dynamics of dissolved organic carbon (DOC) through stormwater basins designed for groundwater recharge in urban area: Assessment of retention efficiency.

PubMed

Mermillod-Blondin, Florian; Simon, Laurent; Maazouzi, Chafik; Foulquier, Arnaud; Delolme, Cécile; Marmonier, Pierre

2015-09-15

Managed aquifer recharge (MAR) has been developed in many countries to limit the risk of urban flooding and compensate for reduced groundwater recharge in urban areas. The environmental performances of MAR systems like infiltration basins depend on the efficiency of soil and vadose zone to retain stormwater-derived contaminants. However, these performances need to be finely evaluated for stormwater-derived dissolved organic matter (DOM) that can affect groundwater quality. Therefore, this study examined the performance of MAR systems to process DOM during its transfer from infiltration basins to an urban aquifer. DOM characteristics (fluorescent spectroscopic properties, biodegradable and refractory fractions of dissolved organic carbon -DOC-, consumption by micro-organisms during incubation in slow filtration sediment columns) were measured in stormwater during its transfer through three infiltration basins during a stormwater event. DOC concentrations sharply decreased from surface to the aquifer for the three MAR sites. This pattern was largely due to the retention of biodegradable DOC which was more than 75% for the three MAR sites, whereas the retention of refractory DOC was more variable and globally less important (from 18% to 61% depending on MAR site). Slow filtration column experiments also showed that DOC retention during stormwater infiltration through soil and vadose zone was mainly due to aerobic microbial consumption of the biodegradable fraction of DOC. In parallel, measurements of DOM characteristics from groundwaters influenced or not by MAR demonstrated that stormwater infiltration increased DOC quantity without affecting its quality (% of biodegradable DOC and relative aromatic carbon content -estimated by SUVA254-). The present study demonstrated that processes occurring in soil and vadose zone of MAR sites were enough efficient to limit DOC fluxes to the aquifer. Nevertheless, the enrichments of DOC concentrations measured in groundwater below infiltration basins need to be considered in future studies to especially assess their impact on groundwater quality. Copyright © 2015 Elsevier Ltd. All rights reserved.

Organic carbon export from the Greenland Ice Sheet: sources, sinks and downstream fluxes

NASA Astrophysics Data System (ADS)

Wadham, J. L.; Lawson, E.; Tranter, M.; Stibal, M.; Telling, J.; Lis, G. P.; Nienow, P. W.; Anesio, A. M.; Butler, C. E.

2012-12-01

Runoff from small glacier systems has been shown to contain dissolved organic carbon (DOC) rich in low molecular weight (LMW), and hence more labile forms, designating glaciers as an important source of carbon for downstream heterotrophic activity. Here we assess glacier surfaces as potential sources of labile DOC to downstream ecosystems, presenting data from a wide range of glacier systems to determine sources and sinks of DOC in glacial and proglacial systems. We subsequently focus upon the Greenland Ice Sheet (GrIS) which is the largest source of glacial runoff at present (400 km3 yr-1), with predicted increases in future decades. We report high fluxes of particulate organic carbon (POC), DOC and LMW labile fractions from a large GrIS catchment during two contrasting melt seasons. POC dominates OC export, is sourced from the ice sheet bed and contains a significant bioreactive component (~10% carbohydrates). The LMW-DOC "labile" fraction derives almost entirely from microbial activity on the ice sheet surface, which is supported by data from glacier systems also presented here. Annual fluxes of DOC, POC and labile components were lower in 2010 than 2009, despite a ~2 fold increase in runoff fluxes in 2010, suggesting production-limited DOC/POC sources. Scaled to the entire ice sheet, combined DOC and POC fluxes are of a similar order of magnitude to other large Arctic river systems and may represent an important source of organic carbon to the North Atlantic, Greenland and Labrador Seas.

VizPrimer: a web server for visualized PCR primer design based on known gene structure.

PubMed

Zhou, Yang; Qu, Wubin; Lu, Yiming; Zhang, Yanchun; Wang, Xiaolei; Zhao, Dongsheng; Yang, Yi; Zhang, Chenggang

2011-12-15

The visualization of gene structure plays an important role in polymerase chain reaction (PCR) primer design, especially for eukaryotic genes with a number of splice variants that users need to distinguish between via PCR. Here, we describe a visualized web server for primer design named VizPrimer. It utilizes the new information technology (IT) tools, HTML5 to display gene structure and JavaScript to interact with the users. In VizPrimer, the users can focus their attention on the gene structure and primer design strategy, without wasting time calculating the exon positions of splice variants or manually configuring complicated parameters. In addition, VizPrimer is also suitable for the design of PCR primers for amplifying open reading frames and detecting single nucleotide polymorphisms (SNPs). VizPrimer is freely available at http://biocompute.bmi.ac.cn/CZlab/VizPrimer/. The web server supported browsers: Chrome (≥5.0), Firefox (≥3.0), Safari (≥4.0) and Opera (≥10.0). zhangcg@bmi.ac.cn; yangyi528@vip.sina.com.

Resolving dual binding conformations of cellulosome cohesin-dockerin complexes using single-molecule force spectroscopy.

PubMed

Jobst, Markus A; Milles, Lukas F; Schoeler, Constantin; Ott, Wolfgang; Fried, Daniel B; Bayer, Edward A; Gaub, Hermann E; Nash, Michael A

2015-10-31

Receptor-ligand pairs are ordinarily thought to interact through a lock and key mechanism, where a unique molecular conformation is formed upon binding. Contrary to this paradigm, cellulosomal cohesin-dockerin (Coh-Doc) pairs are believed to interact through redundant dual binding modes consisting of two distinct conformations. Here, we combined site-directed mutagenesis and single-molecule force spectroscopy (SMFS) to study the unbinding of Coh:Doc complexes under force. We designed Doc mutations to knock out each binding mode, and compared their single-molecule unfolding patterns as they were dissociated from Coh using an atomic force microscope (AFM) cantilever. Although average bulk measurements were unable to resolve the differences in Doc binding modes due to the similarity of the interactions, with a single-molecule method we were able to discriminate the two modes based on distinct differences in their mechanical properties. We conclude that under native conditions wild-type Doc from Clostridium thermocellum exocellulase Cel48S populates both binding modes with similar probabilities. Given the vast number of Doc domains with predicted dual binding modes across multiple bacterial species, our approach opens up new possibilities for understanding assembly and catalytic properties of a broad range of multi-enzyme complexes.

Development and field test of a responsible alcohol service program. Volume 2, Server education program materials

DOT National Transportation Integrated Search

1987-05-01

This report describes a program of server education designed to foster the responsible service of alcohol in bars, restaurants, and other on-sale establishments. The program is administered in two phases. The first phase, three hours in length, is in...

Designing a scalable video-on-demand server with data sharing

NASA Astrophysics Data System (ADS)

Lim, Hyeran; Du, David H.

2000-12-01

As current disk space and transfer speed increase, the bandwidth between a server and its disks has become critical for video-on-demand (VOD) services. Our VOD server consists of several hosts sharing data on disks through a ring-based network. Data sharing provided by the spatial-reuse ring network between servers and disks not only increases the utilization towards full bandwidth but also improves the availability of videos. Striping and replication methods are introduced in order to improve the efficiency of our VOD server system as well as the availability of videos. We consider tow kinds of resources of a VOD server system. Given a representative access profile, our intention is to propose an algorithm to find an initial condition, place videos on disks in the system successfully. If any copy of a video cannot be placed due to lack of resources, more servers/disks are added. When all videos are place on the disks by our algorithm, the final configuration is determined with indicator of how tolerable it is against the fluctuation in demand of videos. Considering it is a NP-hard problem, our algorithm generates the final configuration with O(M log M) at best, where M is the number of movies.

Designing a scalable video-on-demand server with data sharing

NASA Astrophysics Data System (ADS)

Lim, Hyeran; Du, David H. C.

2001-01-01

As current disk space and transfer speed increase, the bandwidth between a server and its disks has become critical for video-on-demand (VOD) services. Our VOD server consists of several hosts sharing data on disks through a ring-based network. Data sharing provided by the spatial-reuse ring network between servers and disks not only increases the utilization towards full bandwidth but also improves the availability of videos. Striping and replication methods are introduced in order to improve the efficiency of our VOD server system as well as the availability of videos. We consider tow kinds of resources of a VOD server system. Given a representative access profile, our intention is to propose an algorithm to find an initial condition, place videos on disks in the system successfully. If any copy of a video cannot be placed due to lack of resources, more servers/disks are added. When all videos are place on the disks by our algorithm, the final configuration is determined with indicator of how tolerable it is against the fluctuation in demand of videos. Considering it is a NP-hard problem, our algorithm generates the final configuration with O(M log M) at best, where M is the number of movies.

Zebra: A striped network file system

NASA Technical Reports Server (NTRS)

Hartman, John H.; Ousterhout, John K.

1992-01-01

The design of Zebra, a striped network file system, is presented. Zebra applies ideas from log-structured file system (LFS) and RAID research to network file systems, resulting in a network file system that has scalable performance, uses its servers efficiently even when its applications are using small files, and provides high availability. Zebra stripes file data across multiple servers, so that the file transfer rate is not limited by the performance of a single server. High availability is achieved by maintaining parity information for the file system. If a server fails its contents can be reconstructed using the contents of the remaining servers and the parity information. Zebra differs from existing striped file systems in the way it stripes file data: Zebra does not stripe on a per-file basis; instead it stripes the stream of bytes written by each client. Clients write to the servers in units called stripe fragments, which are analogous to segments in an LFS. Stripe fragments contain file blocks that were written recently, without regard to which file they belong. This method of striping has numerous advantages over per-file striping, including increased server efficiency, efficient parity computation, and elimination of parity update.

MCTBI: a web server for predicting metal ion effects in RNA structures.

PubMed

Sun, Li-Zhen; Zhang, Jing-Xiang; Chen, Shi-Jie

2017-08-01

Metal ions play critical roles in RNA structure and function. However, web servers and software packages for predicting ion effects in RNA structures are notably scarce. Furthermore, the existing web servers and software packages mainly neglect ion correlation and fluctuation effects, which are potentially important for RNAs. We here report a new web server, the MCTBI server (http://rna.physics.missouri.edu/MCTBI), for the prediction of ion effects for RNA structures. This server is based on the recently developed MCTBI, a model that can account for ion correlation and fluctuation effects for nucleic acid structures and can provide improved predictions for the effects of metal ions, especially for multivalent ions such as Mg 2+ effects, as shown by extensive theory-experiment test results. The MCTBI web server predicts metal ion binding fractions, the most probable bound ion distribution, the electrostatic free energy of the system, and the free energy components. The results provide mechanistic insights into the role of metal ions in RNA structure formation and folding stability, which is important for understanding RNA functions and the rational design of RNA structures. © 2017 Sun et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.

Greenland Ice Sheet exports labile organic carbon to the Arctic oceans

NASA Astrophysics Data System (ADS)

Lawson, E. C.; Wadham, J. L.; Tranter, M.; Stibal, M.; Lis, G. P.; Butler, C. E. H.; Laybourn-Parry, J.; Nienow, P.; Chandler, D.; Dewsbury, P.

2014-07-01

Runoff from small glacier systems contains dissolved organic carbon (DOC) rich in protein-like, low molecular weight (LMW) compounds, designating glaciers as an important source of bioavailable carbon for downstream heterotrophic activity. Fluxes of DOC and particulate organic carbon (POC) exported from large Greenland catchments, however, remain unquantified, despite the Greenland Ice Sheet (GrIS) being the largest source of global glacial runoff (ca. 400 km3 yr-1). We report high and episodic fluxes of POC and DOC from a large (>600 km2) GrIS catchment during contrasting melt seasons. POC dominates organic carbon (OC) export (70-89% on average), is sourced from the ice sheet bed, and contains a significant bioreactive component (9% carbohydrates). A major source of the "bioavailable" (free carbohydrate) LMW-DOC fraction is microbial activity on the ice sheet surface, with some further addition of LMW-DOC to meltwaters by biogeochemical processes at the ice sheet bed. The bioavailability of the exported DOC (26-53%) to downstream marine microorganisms is similar to that reported from other glacial watersheds. Annual fluxes of DOC and free carbohydrates during two melt seasons were similar, despite the approximately two-fold difference in runoff fluxes, suggesting production-limited DOC sources. POC fluxes were also insensitive to an increase in seasonal runoff volumes, indicating a supply limitation in suspended sediment in runoff. Scaled to the GrIS, the combined DOC (0.13-0.17 Tg C yr-1 (±13%)) and POC fluxes (mean = 0.36-1.52 Tg C yr-1 (±14%)) are of a similar order of magnitude to a large Arctic river system, and hence may represent an important OC source to the near-coastal North Atlantic, Greenland and Labrador seas.

Digital optical computer II

NASA Astrophysics Data System (ADS)

Guilfoyle, Peter S.; Stone, Richard V.

1991-12-01

OptiComp is currently completing a 32-bit, fully programmable digital optical computer (DOC II) that is designed to operate in a UNIX environment running RISC microcode. OptiComp's DOC II architecture is focused toward parallel microcode implementation where data is input in a dual rail format. By exploiting the physical principals inherent to optics (speed and low power consumption), an architectural balance of optical interconnects and software code efficiency can be achieved including high fan-in and fan-out. OptiComp's DOC II program is jointly sponsored by the Office of Naval Research (ONR), the Strategic Defense Initiative Office (SDIO), NASA space station group and Rome Laboratory (USAF). This paper not only describes the motivational basis behind DOC II but also provides an optical overview and architectural summary of the device that allows the emulation of any digital instruction set.

DICOM-compliant PACS with CD-based image archival

NASA Astrophysics Data System (ADS)

Cox, Robert D.; Henri, Christopher J.; Rubin, Richard K.; Bret, Patrice M.

1998-07-01

This paper describes the design and implementation of a low- cost PACS conforming to the DICOM 3.0 standard. The goal was to provide an efficient image archival and management solution on a heterogeneous hospital network as a basis for filmless radiology. The system follows a distributed, client/server model and was implemented at a fraction of the cost of a commercial PACS. It provides reliable archiving on recordable CD and allows access to digital images throughout the hospital and on the Internet. Dedicated servers have been designed for short-term storage, CD-based archival, data retrieval and remote data access or teleradiology. The short-term storage devices provide DICOM storage and query/retrieve services to scanners and workstations and approximately twelve weeks of 'on-line' image data. The CD-based archival and data retrieval processes are fully automated with the exception of CD loading and unloading. The system employs lossless compression on both short- and long-term storage devices. All servers communicate via the DICOM protocol in conjunction with both local and 'master' SQL-patient databases. Records are transferred from the local to the master database independently, ensuring that storage devices will still function if the master database server cannot be reached. The system features rules-based work-flow management and WWW servers to provide multi-platform remote data access. The WWW server system is distributed on the storage, retrieval and teleradiology servers allowing viewing of locally stored image data directly in a WWW browser without the need for data transfer to a central WWW server. An independent system monitors disk usage, processes, network and CPU load on each server and reports errors to the image management team via email. The PACS was implemented using a combination of off-the-shelf hardware, freely available software and applications developed in-house. The system has enabled filmless operation in CT, MR and ultrasound within the radiology department and throughout the hospital. The use of WWW technology has enabled the development of an intuitive we- based teleradiology and image management solution that provides complete access to image data.

Supramolecular Chitosan Micro-Platelets Synergistically Enhance Anti-Candida albicans Activity of Amphotericin B Using an Immunocompetent Murine Model.

PubMed

Grisin, Tiphany; Bories, Christian; Bombardi, Martina; Loiseau, Philippe M; Rouffiac, Valérie; Solgadi, Audrey; Mallet, Jean-Maurice; Ponchel, Gilles; Bouchemal, Kawthar

2017-05-01

The aim of this work is to design new chitosan conjugates able to self-organize in aqueous solution in the form of micrometer-size platelets. When mixed with amphotericin B deoxycholate (AmB-DOC), micro-platelets act as a drug booster allowing further improvement in AmB-DOC anti-Candida albicans activity. Micro-platelets were obtained by mixing oleoyl chitosan and α-cyclodextrin in water. The formulation is specifically-engineered for mucosal application by dispersing chitosan micro-platelets into thermosensitive pluronic ® F127 20 wt% hydrogel. The formulation completely cured C. albicans vaginal infection in mice and had a superior activity in comparison with AmB-DOC without addition of chitosan micro-platelets. In vitro studies showed that the platelets significantly enhance AmB-DOC antifungal activity since the IC 50 and the MIC 90 decrease 4.5 and 4.8-times. Calculation of fractional inhibitory concentration index (FICI = 0.198) showed that chitosan micro-platelets act in a synergistic way with AmB-DOC against C. albicans. No synergy is found between spherical nanoparticles composed poly(isobutylcyanoacrylate)/chitosan and AmB-DOC. These results demonstrate for the first time the ability of flattened chitosan micro-platelets to have synergistic activity with AmB-DOC against C. albicans candidiasis and highlight the importance of rheological and mucoadhesive behaviors of hydrogels in the efficacy of the treatment.

Design of Accelerator Online Simulator Server Using Structured Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shen, Guobao; /Brookhaven; Chu, Chungming

2012-07-06

Model based control plays an important role for a modern accelerator during beam commissioning, beam study, and even daily operation. With a realistic model, beam behaviour can be predicted and therefore effectively controlled. The approach used by most current high level application environments is to use a built-in simulation engine and feed a realistic model into that simulation engine. Instead of this traditional monolithic structure, a new approach using a client-server architecture is under development. An on-line simulator server is accessed via network accessible structured data. With this approach, a user can easily access multiple simulation codes. This paper describesmore » the design, implementation, and current status of PVData, which defines the structured data, and PVAccess, which provides network access to the structured data.« less

Impact of malicious servers over trust and reputation models in wireless sensor networks

NASA Astrophysics Data System (ADS)

Verma, Vinod Kumar; Singh, Surinder; Pathak, N. P.

2016-03-01

This article deals with the impact of malicious servers over different trust and reputation models in wireless sensor networks. First, we analysed the five trust and reputation models, namely BTRM-WSN, Eigen trust, peer trust, power trust, linguistic fuzzy trust model. Further, we proposed wireless sensor network design for optimisation of these models. Finally, influence of malicious servers on the behaviour of above mentioned trust and reputation models is discussed. Statistical analysis has been carried out to prove the validity of our proposal.

Using a terminology server and consumer search phrases to help patients find physicians with particular expertise.

PubMed

Cole, Curtis L; Kanter, Andrew S; Cummens, Michael; Vostinar, Sean; Naeymi-Rad, Frank

2004-01-01

To design and implement a real world application using a terminology server to assist patients and physicians who use common language search terms to find specialist physicians with a particular clinical expertise. Terminology servers have been developed to help users encoding of information using complicated structured vocabulary during data entry tasks, such as recording clinical information. We describe a methodology using Personal Health Terminology trade mark and a SNOMED CT-based hierarchical concept server. Construction of a pilot mediated-search engine to assist users who use vernacular speech in querying data which is more technical than vernacular. This approach, which combines theoretical and practical requirements, provides a useful example of concept-based searching for physician referrals.

Implementation experience of a patient monitoring solution based on end-to-end standards.

PubMed

Martinez, I; Fernandez, J; Galarraga, M; Serrano, L; de Toledo, P; Escayola, J; Jimenez-Fernandez, S; Led, S; Martinez-Espronceda, M; Garcia, J

2007-01-01

This paper presents a proof-of-concept design of a patient monitoring solution for Intensive Care Unit (ICU). It is end-to-end standards-based, using ISO/IEEE 11073 (X73) in the bedside environment and EN13606 to communicate the information to an Electronic Healthcare Record (EHR) server. At the bedside end a plug-and-play sensor network is implemented, which communicates with a gateway that collects the medical information and sends it to a monitoring server. At this point the server transforms the data frame into an EN13606 extract, to be stored on the EHR server. The presented system has been tested in a laboratory environment to demonstrate the feasibility of this end-to-end standards-based solution.

A Magnetic Petrology Database for Satellite Magnetic Anomaly Interpretations

NASA Astrophysics Data System (ADS)

Nazarova, K.; Wasilewski, P.; Didenko, A.; Genshaft, Y.; Pashkevich, I.

2002-05-01

A Magnetic Petrology Database (MPDB) is now being compiled at NASA/Goddard Space Flight Center in cooperation with Russian and Ukrainian Institutions. The purpose of this database is to provide the geomagnetic community with a comprehensive and user-friendly method of accessing magnetic petrology data via Internet for more realistic interpretation of satellite magnetic anomalies. Magnetic Petrology Data had been accumulated in NASA/Goddard Space Flight Center, United Institute of Physics of the Earth (Russia) and Institute of Geophysics (Ukraine) over several decades and now consists of many thousands of records of data in our archives. The MPDB was, and continues to be in big demand especially since recent launching in near Earth orbit of the mini-constellation of three satellites - Oersted (in 1999), Champ (in 2000), and SAC-C (in 2000) which will provide lithospheric magnetic maps with better spatial and amplitude resolution (about 1 nT). The MPDB is focused on lower crustal and upper mantle rocks and will include data on mantle xenoliths, serpentinized ultramafic rocks, granulites, iron quartzites and rocks from Archean-Proterozoic metamorphic sequences from all around the world. A substantial amount of data is coming from the area of unique Kursk Magnetic Anomaly and Kola Deep Borehole (which recovered 12 km of continental crust). A prototype MPDB can be found on the Geodynamics Branch web server of Goddard Space Flight Center at http://core2.gsfc.nasa.gov/terr_mag/magnpetr.html. The MPDB employs a searchable relational design and consists of 7 interrelated tables. The schema of database is shown at http://core2.gsfc.nasa.gov/terr_mag/doc.html. MySQL database server was utilized to implement MPDB. The SQL (Structured Query Language) is used to query the database. To present the results of queries on WEB and for WEB programming we utilized PHP scripting language and CGI scripts. The prototype MPDB is designed to search database by major satellite magnetic anomaly, tectonic structure, geographical location, rock type, magnetic properties, chemistry and reference, see http://core2.gsfc.nasa.gov/terr_mag/query1.html. The output of database is HTML structured table, text file, and downloadable file. This database will be very useful for studies of lithospheric satellite magnetic anomalies on the Earth and other terrestrial planets.

Simulated climate change impact on summer dissolved organic carbon release from peat and surface vegetation: implications for drinking water treatment.

PubMed

Ritson, Jonathan P; Bell, Michael; Graham, Nigel J D; Templeton, Michael R; Brazier, Richard E; Verhoef, Anne; Freeman, Chris; Clark, Joanna M

2014-12-15

Uncertainty regarding changes in dissolved organic carbon (DOC) quantity and quality has created interest in managing peatlands for their ecosystem services such as drinking water provision. The evidence base for such interventions is, however, sometimes contradictory. We performed a laboratory climate manipulation using a factorial design on two dominant peatland vegetation types (Calluna vulgaris and Sphagnum Spp.) and a peat soil collected from a drinking water catchment in Exmoor National Park, UK. Temperature and rainfall were set to represent baseline and future conditions under the UKCP09 2080s high emissions scenario for July and August. DOC leachate then underwent standard water treatment of coagulation/flocculation before chlorination. C. vulgaris leached more DOC than Sphagnum Spp. (7.17 versus 3.00 mg g(-1)) with higher specific ultraviolet (SUVA) values and a greater sensitivity to climate, leaching more DOC under simulated future conditions. The peat soil leached less DOC (0.37 mg g(-1)) than the vegetation and was less sensitive to climate. Differences in coagulation removal efficiency between the DOC sources appears to be driven by relative solubilisation of protein-like DOC, observed through the fluorescence peak C/T. Post-coagulation only differences between vegetation types were detected for the regulated disinfection by-products (DBPs), suggesting climate change influence at this scale can be removed via coagulation. Our results suggest current biodiversity restoration programmes to encourage Sphagnum Spp. will result in lower DOC concentrations and SUVA values, particularly with warmer and drier summers. Copyright © 2014 Elsevier Ltd. All rights reserved.

The Emerging Diabetes Online Community

PubMed Central

Hilliard, Marisa E.; Sparling, Kerri M.; Hitchcock, Jeff; Oser, Tamara K.; Hood, Korey K.

2015-01-01

Abstract: Background Diabetes self-management is complex and demanding, and isolation and burnout are common experiences. The Internet provides opportunities for people with diabetes to connect with one another to address these challenges. The aims of this paper are to introduce readers to the platforms on which Diabetes Online Community (DOC) participants interact, to discuss reasons for and risks associated with diabetes-related online activity, and to review research related to the potential impact of DOC participation on diabetes outcomes. Methods Research and online content related to diabetes online activity is reviewed, and DOC writing excerpts are used to illustrate key themes. Guidelines for meaningful participation in DOC activities for people with diabetes, families, health care providers, and industry are provided. Results Common themes around DOC participation include peer support, advocacy, self-expression, seeking and sharing diabetes information, improving approaches to diabetes data management, and humor. Potential risks include access to misinformation and threats to individuals’ privacy, though there are limited data on negative outcomes resulting from such activities. Likewise, few data are available regarding the impact of DOC involvement on glycemic outcomes, but initial research suggests a positive impact on emotional experiences, attitudes toward diabetes, and engagement in diabetes management behaviors. Conclusion The range of DOC participants, activities, and platforms is growing rapidly. The Internet provides opportunities to strengthen communication and support among individuals with diabetes, their families, health care providers, the health care industry, policy makers, and the general public. Research is needed to investigate the impact of DOC participation on self-management, quality of life, and glycemic control, and to design and evaluate strategies to maximize its positive impact. PMID:25901500

The emerging diabetes online community.

PubMed

Hilliard, Marisa E; Sparling, Kerri M; Hitchcock, Jeff; Oser, Tamara K; Hood, Korey K

2015-01-01

Diabetes self-management is complex and demanding, and isolation and burnout are common experiences. The Internet provides opportunities for people with diabetes to connect with one another to address these challenges. The aims of this paper are to introduce readers to the platforms on which Diabetes Online Community (DOC) participants interact, to discuss reasons for and risks associated with diabetes-related online activity, and to review research related to the potential impact of DOC participation on diabetes outcomes. Research and online content related to diabetes online activity is reviewed, and DOC writing excerpts are used to illustrate key themes. Guidelines for meaningful participation in DOC activities for people with diabetes, families, health care providers, and industry are provided. Common themes around DOC participation include peer support, advocacy, self-expression, seeking and sharing diabetes information, improving approaches to diabetes data management, and humor. Potential risks include access to misinformation and threats to individuals' privacy, though there are limited data on negative outcomes resulting from such activities. Likewise, few data are available regarding the impact of DOC involvement on glycemic outcomes, but initial research suggests a positive impact on emotional experiences, attitudes toward diabetes, and engagement in diabetes management behaviors. The range of DOC participants, activities, and platforms is growing rapidly. The Internet provides opportunities to strengthen communication and support among individuals with diabetes, their families, health care providers, the health care industry, policy makers, and the general public. Research is needed to investigate the impact of DOC participation on self-management, quality of life, and glycemic control, and to design and evaluate strategies to maximize its positive impact.

Intellectual Production Supervision Perform based on RFID Smart Electricity Meter

NASA Astrophysics Data System (ADS)

Chen, Xiangqun; Huang, Rui; Shen, Liman; chen, Hao; Xiong, Dezhi; Xiao, Xiangqi; Liu, Mouhai; Xu, Renheng

2018-03-01

This topic develops the RFID intelligent electricity meter production supervision project management system. The system is designed for energy meter production supervision in the management of the project schedule, quality and cost information management requirements in RFID intelligent power, and provide quantitative information more comprehensive, timely and accurate for supervision engineer and project manager management decisions, and to provide technical information for the product manufacturing stage file. From the angle of scheme analysis, design, implementation and test, the system development of production supervision project management system for RFID smart meter project is discussed. Focus on the development of the system, combined with the main business application and management mode at this stage, focuses on the energy meter to monitor progress information, quality information and cost based information on RFID intelligent power management function. The paper introduces the design scheme of the system, the overall client / server architecture, client oriented graphical user interface universal, complete the supervision of project management and interactive transaction information display, the server system of realizing the main program. The system is programmed with C# language and.NET operating environment, and the client and server platforms use Windows operating system, and the database server software uses Oracle. The overall platform supports mainstream information and standards and has good scalability.

IPG Job Manager v2.0 Design Documentation

NASA Technical Reports Server (NTRS)

Hu, Chaumin

2003-01-01

This viewgraph presentation provides a high-level design of the IPG Job Manager, and satisfies its Master Requirement Specification v2.0 Revision 1.0, 01/29/2003. The presentation includes a Software Architecture/Functional Overview with the following: Job Model; Job Manager Client/Server Architecture; Job Manager Client (Job Manager Client Class Diagram and Job Manager Client Activity Diagram); Job Manager Server (Job Manager Client Class Diagram and Job Manager Client Activity Diagram); Development Environment; Project Plan; Requirement Traceability.

Computational Prediction of the Immunomodulatory Potential of RNA Sequences.

PubMed

Nagpal, Gandharva; Chaudhary, Kumardeep; Dhanda, Sandeep Kumar; Raghava, Gajendra Pal Singh

2017-01-01

Advances in the knowledge of various roles played by non-coding RNAs have stimulated the application of RNA molecules as therapeutics. Among these molecules, miRNA, siRNA, and CRISPR-Cas9 associated gRNA have been identified as the most potent RNA molecule classes with diverse therapeutic applications. One of the major limitations of RNA-based therapeutics is immunotoxicity of RNA molecules as it may induce the innate immune system. In contrast, RNA molecules that are potent immunostimulators are strong candidates for use in vaccine adjuvants. Thus, it is important to understand the immunotoxic or immunostimulatory potential of these RNA molecules. The experimental techniques for determining immunostimulatory potential of siRNAs are time- and resource-consuming. To overcome this limitation, recently our group has developed a web-based server "imRNA" for predicting the immunomodulatory potential of RNA sequences. This server integrates a number of modules that allow users to perform various tasks including (1) generation of RNA analogs with reduced immunotoxicity, (2) identification of highly immunostimulatory regions in RNA sequence, and (3) virtual screening. This server may also assist users in the identification of minimum mutations required in a given RNA sequence to minimize its immunomodulatory potential that is required for designing RNA-based therapeutics. Besides, the server can be used for designing RNA-based vaccine adjuvants as it may assist users in the identification of mutations required for increasing immunomodulatory potential of a given RNA sequence. In summary, this chapter describes major applications of the "imRNA" server in designing RNA-based therapeutics and vaccine adjuvants (http://www.imtech.res.in/raghava/imrna/).

Implementing a Dynamic Database-Driven Course Using LAMP

ERIC Educational Resources Information Center

Laverty, Joseph Packy; Wood, David; Turchek, John

2011-01-01

This paper documents the formulation of a database driven open source architecture web development course. The design of a web-based curriculum faces many challenges: a) relative emphasis of client and server-side technologies, b) choice of a server-side language, and c) the cost and efficient delivery of a dynamic web development, database-driven…

Abnormal Web Usage Control by Proxy Strategies.

ERIC Educational Resources Information Center

Yu, Hsiang-Fu; Tseng, Li-Ming

2002-01-01

Approaches to designing a proxy server with Web usage control and to making the proxy server effective on local area networks are proposed to prevent abnormal Web access and to prioritize Web usage. A system is implemented to demonstrate the approaches. The implementation reveals that the proposed approaches are effective, such that the abnormal…

Understanding Customer Dissatisfaction with Underutilized Distributed File Servers

NASA Technical Reports Server (NTRS)

Riedel, Erik; Gibson, Garth

1996-01-01

An important trend in the design of storage subsystems is a move toward direct network attachment. Network-attached storage offers the opportunity to off-load distributed file system functionality from dedicated file server machines and execute many requests directly at the storage devices. For this strategy to lead to better performance, as perceived by users, the response time of distributed operations must improve. In this paper we analyze measurements of an Andrew file system (AFS) server that we recently upgraded in an effort to improve client performance in our laboratory. While the original server's overall utilization was only about 3%, we show how burst loads were sufficiently intense to lead to period of poor response time significant enough to trigger customer dissatisfaction. In particular, we show how, after adjusting for network load and traffic to non-project servers, 50% of the variation in client response time was explained by variation in server central processing unit (CPU) use. That is, clients saw long response times in large part because the server was often over-utilized when it was used at all. Using these measures, we see that off-loading file server work in a network-attached storage architecture has to potential to benefit user response time. Computational power in such a system scales directly with storage capacity, so the slowdown during burst period should be reduced.

The HydroServer Platform for Sharing Hydrologic Data

NASA Astrophysics Data System (ADS)

Tarboton, D. G.; Horsburgh, J. S.; Schreuders, K.; Maidment, D. R.; Zaslavsky, I.; Valentine, D. W.

2010-12-01

The CUAHSI Hydrologic Information System (HIS) is an internet based system that supports sharing of hydrologic data. HIS consists of databases connected using the Internet through Web services, as well as software for data discovery, access, and publication. The HIS system architecture is comprised of servers for publishing and sharing data, a centralized catalog to support cross server data discovery and a desktop client to access and analyze data. This paper focuses on HydroServer, the component developed for sharing and publishing space-time hydrologic datasets. A HydroServer is a computer server that contains a collection of databases, web services, tools, and software applications that allow data producers to store, publish, and manage the data from an experimental watershed or project site. HydroServer is designed to permit publication of data as part of a distributed national/international system, while still locally managing access to the data. We describe the HydroServer architecture and software stack, including tools for managing and publishing time series data for fixed point monitoring sites as well as spatially distributed, GIS datasets that describe a particular study area, watershed, or region. HydroServer adopts a standards based approach to data publication, relying on accepted and emerging standards for data storage and transfer. CUAHSI developed HydroServer code is free with community code development managed through the codeplex open source code repository and development system. There is some reliance on widely used commercial software for general purpose and standard data publication capability. The sharing of data in a common format is one way to stimulate interdisciplinary research and collaboration. It is anticipated that the growing, distributed network of HydroServers will facilitate cross-site comparisons and large scale studies that synthesize information from diverse settings, making the network as a whole greater than the sum of its parts in advancing hydrologic research. Details of the CUAHSI HIS can be found at http://his.cuahsi.org, and HydroServer codeplex site http://hydroserver.codeplex.com.

Optics Program Simplifies Analysis and Design

NASA Technical Reports Server (NTRS)

2007-01-01

Engineers at Goddard Space Flight Center partnered with software experts at Mide Technology Corporation, of Medford, Massachusetts, through a Small Business Innovation Research (SBIR) contract to design the Disturbance-Optics-Controls-Structures (DOCS) Toolbox, a software suite for performing integrated modeling for multidisciplinary analysis and design. The DOCS Toolbox integrates various discipline models into a coupled process math model that can then predict system performance as a function of subsystem design parameters. The system can be optimized for performance; design parameters can be traded; parameter uncertainties can be propagated through the math model to develop error bounds on system predictions; and the model can be updated, based on component, subsystem, or system level data. The Toolbox also allows the definition of process parameters as explicit functions of the coupled model and includes a number of functions that analyze the coupled system model and provide for redesign. The product is being sold commercially by Nightsky Systems Inc., of Raleigh, North Carolina, a spinoff company that was formed by Mide specifically to market the DOCS Toolbox. Commercial applications include use by any contractors developing large space-based optical systems, including Lockheed Martin Corporation, The Boeing Company, and Northrup Grumman Corporation, as well as companies providing technical audit services, like General Dynamics Corporation

Experimental whole-lake dissolved organic carbon increase alters fish diet and density but not growth or productivity

USGS Publications Warehouse

Koizumi, Shuntaro; Craig, Nicola; Zwart, Jacob A.; Kelly, Patrick T.; Ziegler, Jacob P.; Weidel, Brian C.; Jones, Stuart E.; Solomon, Christopher T.

2018-01-01

Negative relationships between dissolved organic carbon (DOC) concentration and fish productivity have been reported from correlative studies across lakes, but to date there have not been experimental tests of these relationships. We increased the DOC concentration in a lake by 3.4 mg L-1, using a before-after control-impact (BACI) design, to quantify the effects on the productivity and population structure of Largemouth Bass (Micropterus salmoides). Greater DOC reduced the volume of the epilimnion, the preferred habitat of Largemouth Bass, resulting in increased bass density. The likelihood that adult bass had empty diets decreased despite this increase in bass density; diet composition also changed. There was no apparent change in bass growth or condition. Overall, there was no net change in Largemouth Bass productivity. However, changes in YOY and juvenile recruitment and feeding success suggest the possibility that future effects could occur. Our results are the first to examine the effects of an increase in DOC on fish productivity through a five-year temporal lens, which demonstrates that the relationship between DOC and fish productivity is multi-dimensional and complex.

Designing a dynamic data driven application system for estimating real-time load of dissolved organic carbon in a river

Treesearch

Ying Ouyang

2012-01-01

Understanding the dynamics of naturally occurring dissolved organic carbon (DOC) in a river is central to estimating surface water quality, aquatic carbon cycling, and global climate change. Currently, determination of the DOC in surface water is primarily accomplished by manually collecting samples for laboratory analysis, which requires at least 24 h. In other words...

Nationwide SIP Telephony Network Design to Prevent Congestion Caused by Disaster

NASA Astrophysics Data System (ADS)

Satoh, Daisuke; Ashitagawa, Kyoko

We present a session initiation protocol (SIP) network design for a voice-over-IP network to prevent congestion caused by people calling friends and family after a disaster. The design increases the capacity of SIP servers in a network by using all of the SIP servers equally. It takes advantage of the fact that equipment for voice data packets is different from equipment for signaling packets in SIP networks. Furthermore, the design achieves simple routing on the basis of telephone numbers. We evaluated the performance of our design in preventing congestion through simulation. We showed that the proposed design has roughly 20 times more capacity, which is 57 times the normal load, than the conventional design if a disaster were to occur in Niigata Prefecture struck by the Chuetsu earthquake in 2004.

Progress in the Development of Direct Osmotic Concentration Wastewater Recovery Process for Advanced Life Support Systems

NASA Technical Reports Server (NTRS)

Cath, Tzahi Y.; Adams, Dean V.; Childress, Amy; Gormly, Sherwin; Flynn, Michael

2005-01-01

Direct osmotic concentration (DOC) has been identified as a high potential technology for recycling of wastewater to drinking water in advanced life support (ALS) systems. As a result the DOC process has been selected for a NASA Rapid Technology Development Team (RTDT) effort. The existing prototype system has been developed to a Technology Readiness Level (TRL) 3. The current project focuses on advancing the development of this technology from TRL 3 to TRL 6 (appropriate for human rated testing). A new prototype of a DOC system is been designed and fabricated that addresses the deficiencies encountered during the testing of the original system and allowing the new prototype to achieve TRL 6. Background information is provided about the technologies investigated and their capabilities, results from preliminary tests, and the milestones plan and activities for the RTDT program intended to develop a second generation prototype of the DOC system.

Resolving dual binding conformations of cellulosome cohesin-dockerin complexes using single-molecule force spectroscopy

PubMed Central

Jobst, Markus A; Milles, Lukas F; Schoeler, Constantin; Ott, Wolfgang; Fried, Daniel B; Bayer, Edward A; Gaub, Hermann E; Nash, Michael A

2015-01-01

Receptor-ligand pairs are ordinarily thought to interact through a lock and key mechanism, where a unique molecular conformation is formed upon binding. Contrary to this paradigm, cellulosomal cohesin-dockerin (Coh-Doc) pairs are believed to interact through redundant dual binding modes consisting of two distinct conformations. Here, we combined site-directed mutagenesis and single-molecule force spectroscopy (SMFS) to study the unbinding of Coh:Doc complexes under force. We designed Doc mutations to knock out each binding mode, and compared their single-molecule unfolding patterns as they were dissociated from Coh using an atomic force microscope (AFM) cantilever. Although average bulk measurements were unable to resolve the differences in Doc binding modes due to the similarity of the interactions, with a single-molecule method we were able to discriminate the two modes based on distinct differences in their mechanical properties. We conclude that under native conditions wild-type Doc from Clostridium thermocellum exocellulase Cel48S populates both binding modes with similar probabilities. Given the vast number of Doc domains with predicteddual binding modes across multiple bacterial species, our approach opens up newpossibilities for understanding assembly and catalytic properties of a broadrange of multi-enzyme complexes. DOI: http://dx.doi.org/10.7554/eLife.10319.001 PMID:26519733

Yahoo! Compute Coop (YCC). A Next-Generation Passive Cooling Design for Data Centers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Robison, AD; Page, Christina; Lytle, Bob

The purpose of the Yahoo! Compute Coop (YCC) project is to research, design, build and implement a greenfield "efficient data factory" and to specifically demonstrate that the YCC concept is feasible for large facilities housing tens of thousands of heat-producing computing servers. The project scope for the Yahoo! Compute Coop technology includes: - Analyzing and implementing ways in which to drastically decrease energy consumption and waste output. - Analyzing the laws of thermodynamics and implementing naturally occurring environmental effects in order to maximize the "free-cooling" for large data center facilities. "Free cooling" is the direct usage of outside air tomore » cool the servers vs. traditional "mechanical cooling" which is supplied by chillers or other Dx units. - Redesigning and simplifying building materials and methods. - Shortening and simplifying build-to-operate schedules while at the same time reducing initial build and operating costs. Selected for its favorable climate, the greenfield project site is located in Lockport, NY. Construction on the 9.0 MW critical load data center facility began in May 2009, with the fully operational facility deployed in September 2010. The relatively low initial build cost, compatibility with current server and network models, and the efficient use of power and water are all key features that make it a highly compatible and globally implementable design innovation for the data center industry. Yahoo! Compute Coop technology is designed to achieve 99.98% uptime availability. This integrated building design allows for free cooling 99% of the year via the building's unique shape and orientation, as well as server physical configuration.« less

Assessment of Risk Communication about Undercooked Hamburgers by Restaurant Servers.

PubMed

Thomas, Ellen M; Binder, Andrew R; McLAUGHLIN, Anne; Jaykus, Lee-Ann; Hanson, Dana; Powell, Douglas; Chapman, Benjamin

2016-12-01

According to the U.S. Food and Drug Administration 2013 Model Food Code, it is the duty of a food establishment to disclose and remind consumers of risk when ordering undercooked food such as ground beef. The purpose of this study was to explore actual risk communication behaviors of food establishment servers. Secret shoppers visited 265 restaurants in seven geographic locations across the United States, ordered medium rare burgers, and collected and coded risk information from chain and independent restaurant menus and from server responses. The majority of servers reported an unreliable method of doneness (77%) or other incorrect information (66%) related to burger doneness and safety. These results indicate major gaps in server knowledge and risk communication, and the current risk communication language in the Model Food Code does not sufficiently fill these gaps. The question is "should servers even be acting as risk communicators?" There are numerous challenges associated with this practice, including high turnover rates, limited education, and the high stress environment based on pleasing a customer. If servers are designated as risk communicators, food establishment staff should be adequately trained and provided with consumer advisory messages that are accurate, audience appropriate, and delivered in a professional manner so that customers can make informed food safety decisions.

The design of a petabyte archive and distribution system for the NASA ECS project

NASA Technical Reports Server (NTRS)

Caulk, Parris M.

1994-01-01

The NASA EOS Data and Information System (EOSDIS) Core System (ECS) will contain one of the largest data management systems ever built - the ECS Science and Data Processing System (SDPS). SDPS is designed to support long term Global Change Research by acquiring, producing, and storing earth science data, and by providing efficient means for accessing and manipulating that data. The first two releases of SDPS, Release A and Release B, will be operational in 1997 and 1998, respectively. Release B will be deployed at eight Distributed Active Archiving Centers (DAAC's). Individual DAAC's will archive different collections of earth science data, and will vary in archive capacity. The storage and management of these data collections is the responsibility of the SDPS Data Server subsystem. It is anticipated that by the year 2001, the Data Server subsystem at the Goddard DAAC must support a near-line data storage capacity of one petabyte. The development of SDPS is a system integration effort in which COTS products will be used in favor of custom components in very possible way. Some software and hardware capabilities required to meet ECS data volume and storage management requirements beyond 1999 are not yet supported by available COTS products. The ECS project will not undertake major custom development efforts to provide these capabilities. Instead, SDPS and its Data Server subsystem are designed to support initial implementations with current products, and provide an evolutionary framework that facilitates the introduction of advanced COTS products as they become available. This paper provides a high-level description of the Data Server subsystem design from a COTS integration standpoint, and discussed some of the major issues driving the design. The paper focuses on features of the design that will make the system scalable and adaptable to changing technologies.

Using NetCloak to develop server-side Web-based experiments without writing CGI programs.

PubMed

Wolfe, Christopher R; Reyna, Valerie F

2002-05-01

Server-side experiments use the Web server, rather than the participant's browser, to handle tasks such as random assignment, eliminating inconsistencies with JAVA and other client-side applications. Heretofore, experimenters wishing to create server-side experiments have had to write programs to create common gateway interface (CGI) scripts in programming languages such as Perl and C++. NetCloak uses simple, HTML-like commands to create CGIs. We used NetCloak to implement an experiment on probability estimation. Measurements of time on task and participants' IP addresses assisted quality control. Without prior training, in less than 1 month, we were able to use NetCloak to design and create a Web-based experiment and to help graduate students create three Web-based experiments of their own.

The Raid distributed database system

NASA Technical Reports Server (NTRS)

Bhargava, Bharat; Riedl, John

1989-01-01

Raid, a robust and adaptable distributed database system for transaction processing (TP), is described. Raid is a message-passing system, with server processes on each site to manage concurrent processing, consistent replicated copies during site failures, and atomic distributed commitment. A high-level layered communications package provides a clean location-independent interface between servers. The latest design of the package delivers messages via shared memory in a configuration with several servers linked into a single process. Raid provides the infrastructure to investigate various methods for supporting reliable distributed TP. Measurements on TP and server CPU time are presented, along with data from experiments on communications software, consistent replicated copy control during site failures, and concurrent distributed checkpointing. A software tool for evaluating the implementation of TP algorithms in an operating-system kernel is proposed.

PEM public key certificate cache server

NASA Astrophysics Data System (ADS)

Cheung, T.

1993-12-01

Privacy Enhanced Mail (PEM) provides privacy enhancement services to users of Internet electronic mail. Confidentiality, authentication, message integrity, and non-repudiation of origin are provided by applying cryptographic measures to messages transferred between end systems by the Message Transfer System. PEM supports both symmetric and asymmetric key distribution. However, the prevalent implementation uses a public key certificate-based strategy, modeled after the X.509 directory authentication framework. This scheme provides an infrastructure compatible with X.509. According to RFC 1422, public key certificates can be stored in directory servers, transmitted via non-secure message exchanges, or distributed via other means. Directory services provide a specialized distributed database for OSI applications. The directory contains information about objects and then provides structured mechanisms for accessing that information. Since directory services are not widely available now, a good approach is to manage certificates in a centralized certificate server. This document describes the detailed design of a centralized certificate cache serve. This server manages a cache of certificates and a cache of Certificate Revocation Lists (CRL's) for PEM applications. PEMapplications contact the server to obtain/store certificates and CRL's. The server software is programmed in C and ELROS. To use this server, ISODE has to be configured and installed properly. The ISODE library 'libisode.a' has to be linked together with this library because ELROS uses the transport layer functions provided by 'libisode.a.' The X.500 DAP library that is included with the ELROS distribution has to be linked in also, since the server uses the DAP library functions to communicate with directory servers.

Volume serving and media management in a networked, distributed client/server environment

NASA Technical Reports Server (NTRS)

Herring, Ralph H.; Tefend, Linda L.

1993-01-01

The E-Systems Modular Automated Storage System (EMASS) is a family of hierarchical mass storage systems providing complete storage/'file space' management. The EMASS volume server provides the flexibility to work with different clients (file servers), different platforms, and different archives with a 'mix and match' capability. The EMASS design considers all file management programs as clients of the volume server system. System storage capacities are tailored to customer needs ranging from small data centers to large central libraries serving multiple users simultaneously. All EMASS hardware is commercial off the shelf (COTS), selected to provide the performance and reliability needed in current and future mass storage solutions. All interfaces use standard commercial protocols and networks suitable to service multiple hosts. EMASS is designed to efficiently store and retrieve in excess of 10,000 terabytes of data. Current clients include CRAY's YMP Model E based Data Migration Facility (DMF), IBM's RS/6000 based Unitree, and CONVEX based EMASS File Server software. The VolSer software provides the capability to accept client or graphical user interface (GUI) commands from the operator's console and translate them to the commands needed to control any configured archive. The VolSer system offers advanced features to enhance media handling and particularly media mounting such as: automated media migration, preferred media placement, drive load leveling, registered MediaClass groupings, and drive pooling.

A Semantics-Based Information Distribution Framework for Large Web-Based Course Forum System

ERIC Educational Resources Information Center

Chim, Hung; Deng, Xiaotie

2008-01-01

We propose a novel data distribution framework for developing a large Web-based course forum system. In the distributed architectural design, each forum server is fully equipped with the ability to support some course forums independently. The forum servers collaborating with each other constitute the whole forum system. Therefore, the workload of…

Development of a Web-Enabled Learning Platform for Geospatial Laboratories: Improving the Undergraduate Learning Experience

ERIC Educational Resources Information Center

Mui, Amy B.; Nelson, Sarah; Huang, Bruce; He, Yuhong; Wilson, Kathi

2015-01-01

This paper describes a web-enabled learning platform providing remote access to geospatial software that extends the learning experience outside of the laboratory setting. The platform was piloted in two undergraduate courses, and includes a software server, a data server, and remote student users. The platform was designed to improve the quality…

PRISMA-MAR: An Architecture Model for Data Visualization in Augmented Reality Mobile Devices

ERIC Educational Resources Information Center

Gomes Costa, Mauro Alexandre Folha; Serique Meiguins, Bianchi; Carneiro, Nikolas S.; Gonçalves Meiguins, Aruanda Simões

2013-01-01

This paper proposes an extension to mobile augmented reality (MAR) environments--the addition of data charts to the more usual text, image and video components. To this purpose, we have designed a client-server architecture including the main necessary modules and services to provide an Information Visualization MAR experience. The server side…

Security enhanced anonymous multiserver authenticated key agreement scheme using smart cards and biometrics.

PubMed

Choi, Younsung; Nam, Junghyun; Lee, Donghoon; Kim, Jiye; Jung, Jaewook; Won, Dongho

2014-01-01

An anonymous user authentication scheme allows a user, who wants to access a remote application server, to achieve mutual authentication and session key establishment with the server in an anonymous manner. To enhance the security of such authentication schemes, recent researches combined user's biometrics with a password. However, these authentication schemes are designed for single server environment. So when a user wants to access different application servers, the user has to register many times. To solve this problem, Chuang and Chen proposed an anonymous multiserver authenticated key agreement scheme using smart cards together with passwords and biometrics. Chuang and Chen claimed that their scheme not only supports multiple servers but also achieves various security requirements. However, we show that this scheme is vulnerable to a masquerade attack, a smart card attack, a user impersonation attack, and a DoS attack and does not achieve perfect forward secrecy. We also propose a security enhanced anonymous multiserver authenticated key agreement scheme which addresses all the weaknesses identified in Chuang and Chen's scheme.

An Improvement of Robust Biometrics-Based Authentication and Key Agreement Scheme for Multi-Server Environments Using Smart Cards.

PubMed

Moon, Jongho; Choi, Younsung; Jung, Jaewook; Won, Dongho

2015-01-01

In multi-server environments, user authentication is a very important issue because it provides the authorization that enables users to access their data and services; furthermore, remote user authentication schemes for multi-server environments have solved the problem that has arisen from user's management of different identities and passwords. For this reason, numerous user authentication schemes that are designed for multi-server environments have been proposed over recent years. In 2015, Lu et al. improved upon Mishra et al.'s scheme, claiming that their remote user authentication scheme is more secure and practical; however, we found that Lu et al.'s scheme is still insecure and incorrect. In this paper, we demonstrate that Lu et al.'s scheme is vulnerable to outsider attack and user impersonation attack, and we propose a new biometrics-based scheme for authentication and key agreement that can be used in multi-server environments; then, we show that our proposed scheme is more secure and supports the required security properties.

A group communication approach for mobile computing mobile channel: An ISIS tool for mobile services

NASA Astrophysics Data System (ADS)

Cho, Kenjiro; Birman, Kenneth P.

1994-05-01

This paper examines group communication as an infrastructure to support mobility of users, and presents a simple scheme to support user mobility by means of switching a control point between replicated servers. We describe the design and implementation of a set of tools, called Mobile Channel, for use with the ISIS system. Mobile Channel is based on a combination of the two replication schemes: the primary-backup approach and the state machine approach. Mobile Channel implements a reliable one-to-many FIFO channel, in which a mobile client sees a single reliable server; servers, acting as a state machine, see multicast messages from clients. Migrations of mobile clients are handled as an intentional primary switch, and hand-offs or server failures are completely masked to mobile clients. To achieve high performance, servers are replicated at a sliding-window level. Our scheme provides a simple abstraction of migration, eliminates complicated hand-off protocols, provides fault-tolerance and is implemented within the existing group communication mechanism.

Design and evaluation of web-based image transmission and display with different protocols

NASA Astrophysics Data System (ADS)

Tan, Bin; Chen, Kuangyi; Zheng, Xichuan; Zhang, Jianguo

2011-03-01

There are many Web-based image accessing technologies used in medical imaging area, such as component-based (ActiveX Control) thick client Web display, Zerofootprint thin client Web viewer (or called server side processing Web viewer), Flash Rich Internet Application(RIA) ,or HTML5 based Web display. Different Web display methods have different peformance in different network environment. In this presenation, we give an evaluation on two developed Web based image display systems. The first one is used for thin client Web display. It works between a PACS Web server with WADO interface and thin client. The PACS Web server provides JPEG format images to HTML pages. The second one is for thick client Web display. It works between a PACS Web server with WADO interface and thick client running in browsers containing ActiveX control, Flash RIA program or HTML5 scripts. The PACS Web server provides native DICOM format images or JPIP stream for theses clients.

SAbPred: a structure-based antibody prediction server

PubMed Central

Dunbar, James; Krawczyk, Konrad; Leem, Jinwoo; Marks, Claire; Nowak, Jaroslaw; Regep, Cristian; Georges, Guy; Kelm, Sebastian; Popovic, Bojana; Deane, Charlotte M.

2016-01-01

SAbPred is a server that makes predictions of the properties of antibodies focusing on their structures. Antibody informatics tools can help improve our understanding of immune responses to disease and aid in the design and engineering of therapeutic molecules. SAbPred is a single platform containing multiple applications which can: number and align sequences; automatically generate antibody variable fragment homology models; annotate such models with estimated accuracy alongside sequence and structural properties including potential developability issues; predict paratope residues; and predict epitope patches on protein antigens. The server is available at http://opig.stats.ox.ac.uk/webapps/sabpred. PMID:27131379

A visualization environment for supercomputing-based applications in computational mechanics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pavlakos, C.J.; Schoof, L.A.; Mareda, J.F.

1993-06-01

In this paper, we characterize a visualization environment that has been designed and prototyped for a large community of scientists and engineers, with an emphasis in superconducting-based computational mechanics. The proposed environment makes use of a visualization server concept to provide effective, interactive visualization to the user`s desktop. Benefits of using the visualization server approach are discussed. Some thoughts regarding desirable features for visualization server hardware architectures are also addressed. A brief discussion of the software environment is included. The paper concludes by summarizing certain observations which we have made regarding the implementation of such visualization environments.

Implications of the degree of controllability of controlled plants in the sense of LQR optimal control

NASA Astrophysics Data System (ADS)

Xia, Yaping; Yin, Minghui; Zou, Yun

2018-01-01

In this paper, the relationship between the degree of controllability (DOC) of controlled plants and the corresponding quadratic optimal performance index in LQR control is investigated for the electro-hydraulic synchronising servo control systems and wind turbine systems, respectively. It is shown that for these two types of systems, the higher the DOC of a controlled plant is, the better the quadratic optimal performance index is. It implies that in some LQR controller designs, the measure of the DOC of a controlled plant can be used as an index for the optimisation of adjustable plant parameters, by which the plant can be controlled more effectively.

incaRNAfbinv: a web server for the fragment-based design of RNA sequences

PubMed Central

Drory Retwitzer, Matan; Reinharz, Vladimir; Ponty, Yann; Waldispühl, Jérôme; Barash, Danny

2016-01-01

Abstract In recent years, new methods for computational RNA design have been developed and applied to various problems in synthetic biology and nanotechnology. Lately, there is considerable interest in incorporating essential biological information when solving the inverse RNA folding problem. Correspondingly, RNAfbinv aims at including biologically meaningful constraints and is the only program to-date that performs a fragment-based design of RNA sequences. In doing so it allows the design of sequences that do not necessarily exactly fold into the target, as long as the overall coarse-grained tree graph shape is preserved. Augmented by the weighted sampling algorithm of incaRNAtion, our web server called incaRNAfbinv implements the method devised in RNAfbinv and offers an interactive environment for the inverse folding of RNA using a fragment-based design approach. It takes as input: a target RNA secondary structure; optional sequence and motif constraints; optional target minimum free energy, neutrality and GC content. In addition to the design of synthetic regulatory sequences, it can be used as a pre-processing step for the detection of novel natural occurring RNAs. The two complementary methodologies RNAfbinv and incaRNAtion are merged together and fully implemented in our web server incaRNAfbinv, available at http://www.cs.bgu.ac.il/incaRNAfbinv. PMID:27185893

Exploring the Impact of Online Peer-Editing Using Google Docs on EFL Learners' Academic Writing Skills: A Mixed Methods Study

ERIC Educational Resources Information Center

Ebadi, Saman; Rahimi, Masoud

2017-01-01

This article reports the results of a sequential explanatory mixed-methods approach to explore the impact of online peer-editing using Google Docs and peer-editing in a face-to-face classroom on EFL learners' academic writing skills. As the study adopted a quasi-experimental design, two intact classes, each with ten EFL learners, attending an…

WMT: The CSDMS Web Modeling Tool

NASA Astrophysics Data System (ADS)

Piper, M.; Hutton, E. W. H.; Overeem, I.; Syvitski, J. P.

2015-12-01

The Community Surface Dynamics Modeling System (CSDMS) has a mission to enable model use and development for research in earth surface processes. CSDMS strives to expand the use of quantitative modeling techniques, promotes best practices in coding, and advocates for the use of open-source software. To streamline and standardize access to models, CSDMS has developed the Web Modeling Tool (WMT), a RESTful web application with a client-side graphical interface and a server-side database and API that allows users to build coupled surface dynamics models in a web browser on a personal computer or a mobile device, and run them in a high-performance computing (HPC) environment. With WMT, users can: Design a model from a set of components Edit component parameters Save models to a web-accessible server Share saved models with the community Submit runs to an HPC system Download simulation results The WMT client is an Ajax application written in Java with GWT, which allows developers to employ object-oriented design principles and development tools such as Ant, Eclipse and JUnit. For deployment on the web, the GWT compiler translates Java code to optimized and obfuscated JavaScript. The WMT client is supported on Firefox, Chrome, Safari, and Internet Explorer. The WMT server, written in Python and SQLite, is a layered system, with each layer exposing a web service API: wmt-db: database of component, model, and simulation metadata and output wmt-api: configure and connect components wmt-exe: launch simulations on remote execution servers The database server provides, as JSON-encoded messages, the metadata for users to couple model components, including descriptions of component exchange items, uses and provides ports, and input parameters. Execution servers are network-accessible computational resources, ranging from HPC systems to desktop computers, containing the CSDMS software stack for running a simulation. Once a simulation completes, its output, in NetCDF, is packaged and uploaded to a data server where it is stored and from which a user can download it as a single compressed archive file.

Development, Deployment, and Cost Effectiveness of a Self-Administered Stereo Non Mydriatic Automated Retinal Camera (SNARC) Containing Automated Retinal Lesion (ARL) Detection Using Adaptive Optics

DTIC Science & Technology

2010-10-01

Requirements Application Server  BEA Weblogic Express 9.2 or higher  Java v5Apache Struts v2  Hibernate v2  C3PO  SQL*Net client / JDBC Database Server...designed for the desktop o An HTML and JavaScript browser-based front end designed for mobile Smartphones - A Java -based framework utilizing Apache...Technology Requirements The recommended technologies are as follows: Technology Use Requirements Java Application Provides the backend application

Rapid Response of Hydrological Loss of DOC to Water Table Drawdown and Warming in Zoige Peatland: Results from a Mesocosm Experiment

PubMed Central

Lou, Xue-Dong; Zhai, Sheng-Qiang; Kang, Bing; Hu, Ya-Lin; Hu, Li-Le

2014-01-01

A large portion of the global carbon pool is stored in peatlands, which are sensitive to a changing environment conditions. The hydrological loss of dissolved organic carbon (DOC) is believed to play a key role in determining the carbon balance in peatlands. Zoige peatland, the largest peat store in China, is experiencing climatic warming and drying as well as experiencing severe artificial drainage. Using a fully crossed factorial design, we experimentally manipulated temperature and controlled the water tables in large mesocosms containing intact peat monoliths. Specifically, we determined the impact of warming and water table position on the hydrological loss of DOC, the exported amounts, concentrations and qualities of DOC, and the discharge volume in Zoige peatland. Our results revealed that of the water table position had a greater impact on DOC export than the warming treatment, which showed no interactive effects with the water table treatment. Both DOC concentration and discharge volume were significantly increased when water table drawdown, while only the DOC concentration was significantly promoted by warming treatment. Annual DOC export was increased by 69% and 102% when the water table, controlled at 0 cm, was experimentally lowered by −10 cm and −20 cm. Increases in colored and aromatic constituents of DOC (measured by Abs254 nm, SUVA254 nm, Abs400 nm, and SUVA400 nm) were observed under the lower water tables and at the higher peat temperature. Our results provide an indication of the potential impacts of climatic change and anthropogenic drainage on the carbon cycle and/or water storage in a peatland and simultaneously imply the likelihood of potential damage to downstream ecosystems. Furthermore, our results highlight the need for local protection and sustainable development, as well as suggest that more research is required to better understand the impacts of climatic change and artificial disturbances on peatland degradation. PMID:25369065

Potential vulnerability of southeast Alaskan wetland soil carbon stocks to climate warming

NASA Astrophysics Data System (ADS)

Fellman, J.; D'Amore, D. V.; Hood, E. W.

2015-12-01

Carbon cycling along the high latitude coastal margins of Alaska is poorly understood relative to boreal and arctic ecosystems. The perhumid coastal temperate rainforest (PCTR) of southeast Alaska has some of the densest carbon stocks (>300 Mg C ha-1) in the world but the fate of these stocks with continued warming will balance on the poorly constrained rates of carbon accumulation and loss. We quantified the rate of dissolved organic carbon (DOC) and carbon dioxide (CO2) production from four different wetland types (rich fen, poor fen, forested wetland and cedar wetland) using controlled laboratory incubations of surface (10 cm) and subsurface (25 cm) soils incubated at 8 ºC and 15 ºC for 37 weeks. This design allowed us to determine the potential vulnerability of wetland soil carbon stocks to climate warming and partition organic matter mineralization into DOC and CO2 fluxes and its controls (e.g., wetland type and temperature). Furthermore, we used fluorescence characterization of DOC and laboratory bioassays to assess how climate warming may impact the quality and bioavailability of DOC delivered to fluvial systems. Soil depth and temperature strongly influenced carbon loss in all four wetland types with the greatest CO2 fluxes observed in the rich fen and greatest DOC fluxes observed in the poor fen. Of the fluxes, CO2 was the most sensitive to incubation temperature but DOC showed more variation with wetland type. Fluxes of DOC and CO2 were positively correlated only during the last few months of the incubation suggesting strong biotic control of DOC production developed as soil organic matter decomposition progressed. Moreover, bioavailable DOC and protein-like fluorescence were greatest in the initial soil extractions but dramatically decreased over the length of the incubations. Our findings suggest that soil organic matter decomposition will increase as the PCTR continues to warm, but this response will also will vary with wetland type.

Rapid response of hydrological loss of DOC to water table drawdown and warming in Zoige peatland: results from a mesocosm experiment.

PubMed

Lou, Xue-Dong; Zhai, Sheng-Qiang; Kang, Bing; Hu, Ya-Lin; Hu, Li-Le

2014-01-01

A large portion of the global carbon pool is stored in peatlands, which are sensitive to a changing environment conditions. The hydrological loss of dissolved organic carbon (DOC) is believed to play a key role in determining the carbon balance in peatlands. Zoige peatland, the largest peat store in China, is experiencing climatic warming and drying as well as experiencing severe artificial drainage. Using a fully crossed factorial design, we experimentally manipulated temperature and controlled the water tables in large mesocosms containing intact peat monoliths. Specifically, we determined the impact of warming and water table position on the hydrological loss of DOC, the exported amounts, concentrations and qualities of DOC, and the discharge volume in Zoige peatland. Our results revealed that of the water table position had a greater impact on DOC export than the warming treatment, which showed no interactive effects with the water table treatment. Both DOC concentration and discharge volume were significantly increased when water table drawdown, while only the DOC concentration was significantly promoted by warming treatment. Annual DOC export was increased by 69% and 102% when the water table, controlled at 0 cm, was experimentally lowered by -10 cm and -20 cm. Increases in colored and aromatic constituents of DOC (measured by Abs(254 nm), SUVA(254 nm), Abs(400 nm), and SUVA(400 nm)) were observed under the lower water tables and at the higher peat temperature. Our results provide an indication of the potential impacts of climatic change and anthropogenic drainage on the carbon cycle and/or water storage in a peatland and simultaneously imply the likelihood of potential damage to downstream ecosystems. Furthermore, our results highlight the need for local protection and sustainable development, as well as suggest that more research is required to better understand the impacts of climatic change and artificial disturbances on peatland degradation.

Development and process evaluation of a web-based responsible beverage service training program

PubMed Central

2012-01-01

Background Responsible beverage service (RBS) training designed to improve the appropriate service of alcohol in commercial establishments is typically delivered in workshops. Recently, Web-based RBS training programs have emerged. This report describes the formative development and subsequent design of an innovative Web-delivered RBS program, and evaluation of the impact of the program on servers’ knowledge, attitudes, and self-efficacy. Methods Formative procedures using focus groups and usability testing were used to develop a Web-based RBS training program. Professional alcohol servers (N = 112) who worked as servers and/or mangers in alcohol service settings were recruited to participate. A pre-post assessment design was used to assess changes associated with using the program. Results Participants who used the program showed significant improvements in their RBS knowledge, attitudes, and self-efficacy. Conclusions Although the current study did not directly observe and determine impact of the intervention on server behaviors, it demonstrated that the development process incorporating input from a multidisciplinary team in conjunction with feedback from end-users resulted in creation of a Web-based RBS program that was well-received by servers and that changed relevant knowledge, attitudes, and self-efficacy. The results also help to establish a needed evidence base in support of the use of online RBS training, which has been afforded little research attention. PMID:22999419

Design of a Golf Swing Injury Detection and Evaluation open service platform with Ontology-oriented clustering case-based reasoning mechanism.

PubMed

Ku, Hao-Hsiang

2015-01-01

Nowadays, people can easily use a smartphone to get wanted information and requested services. Hence, this study designs and proposes a Golf Swing Injury Detection and Evaluation open service platform with Ontology-oritened clustering case-based reasoning mechanism, which is called GoSIDE, based on Arduino and Open Service Gateway initative (OSGi). GoSIDE is a three-tier architecture, which is composed of Mobile Users, Application Servers and a Cloud-based Digital Convergence Server. A mobile user is with a smartphone and Kinect sensors to detect the user's Golf swing actions and to interact with iDTV. An application server is with Intelligent Golf Swing Posture Analysis Model (iGoSPAM) to check a user's Golf swing actions and to alter this user when he is with error actions. Cloud-based Digital Convergence Server is with Ontology-oriented Clustering Case-based Reasoning (CBR) for Quality of Experiences (OCC4QoE), which is designed to provide QoE services by QoE-based Ontology strategies, rules and events for this user. Furthermore, GoSIDE will automatically trigger OCC4QoE and deliver popular rules for a new user. Experiment results illustrate that GoSIDE can provide appropriate detections for Golfers. Finally, GoSIDE can be a reference model for researchers and engineers.

Experiment Management System for the SND Detector

NASA Astrophysics Data System (ADS)

Pugachev, K.

2017-10-01

We present a new experiment management system for the SND detector at the VEPP-2000 collider (Novosibirsk). An important part to report about is access to experimental databases (configuration, conditions and metadata). The system is designed in client-server architecture. User interaction comes true using web-interface. The server side includes several logical layers: user interface templates; template variables description and initialization; implementation details. The templates are meant to involve as less IT knowledge as possible. Experiment configuration, conditions and metadata are stored in a database. To implement the server side Node.js, a modern JavaScript framework, has been chosen. A new template engine having an interesting feature is designed. A part of the system is put into production. It includes templates dealing with showing and editing first level trigger configuration and equipment configuration and also showing experiment metadata and experiment conditions data index.

New web technologies for astronomy

NASA Astrophysics Data System (ADS)

Sprimont, P.-G.; Ricci, D.; Nicastro, L.

2014-12-01

Thanks to the new HTML5 capabilities and the huge improvements of the JavaScript language, it is now possible to design very complex and interactive web user interfaces. On top of that, the once monolithic and file-server oriented web servers are evolving into easily programmable server applications capable to cope with the complex interactions made possible by the new generation of browsers. We believe that the whole community of amateur and professionals astronomers can benefit from the potential of these new technologies. New web interfaces can be designed to provide the user with a large deal of much more intuitive and interactive tools. Accessing astronomical data archives, schedule, control and monitor observatories, and in particular robotic telescopes, supervising data reduction pipelines, all are capabilities that can now be implemented in a JavaScript web application. In this paper we describe the Sadira package we are implementing exactly to this aim.

On the Design of a Comprehensive Authorisation Framework for Service Oriented Architecture (SOA)

DTIC Science & Technology

2013-07-01

Authentication Server AZM Authorisation Manager AZS Authorisation Server BP Business Process BPAA Business Process Authorisation Architecture BPAD Business...Internet Protocol Security JAAS Java Authentication and Authorisation Service MAC Mandatory Access Control RBAC Role Based Access Control RCA Regional...the authentication process, make authorisation decisions using application specific access control functions that results in the practice of

A Two-Tiered Model for Analyzing Library Web Site Usage Statistics, Part 1: Web Server Logs.

ERIC Educational Resources Information Center

Cohen, Laura B.

2003-01-01

Proposes a two-tiered model for analyzing web site usage statistics for academic libraries: one tier for library administrators that analyzes measures indicating library use, and a second tier for web site managers that analyzes measures aiding in server maintenance and site design. Discusses the technology of web site usage statistics, and…

Design and implementation of a distributed large-scale spatial database system based on J2EE

NASA Astrophysics Data System (ADS)

Gong, Jianya; Chen, Nengcheng; Zhu, Xinyan; Zhang, Xia

2003-03-01

With the increasing maturity of distributed object technology, CORBA, .NET and EJB are universally used in traditional IT field. However, theories and practices of distributed spatial database need farther improvement in virtue of contradictions between large scale spatial data and limited network bandwidth or between transitory session and long transaction processing. Differences and trends among of CORBA, .NET and EJB are discussed in details, afterwards the concept, architecture and characteristic of distributed large-scale seamless spatial database system based on J2EE is provided, which contains GIS client application, web server, GIS application server and spatial data server. Moreover the design and implementation of components of GIS client application based on JavaBeans, the GIS engine based on servlet, the GIS Application server based on GIS enterprise JavaBeans(contains session bean and entity bean) are explained.Besides, the experiments of relation of spatial data and response time under different conditions are conducted, which proves that distributed spatial database system based on J2EE can be used to manage, distribute and share large scale spatial data on Internet. Lastly, a distributed large-scale seamless image database based on Internet is presented.

TCRmodel: high resolution modeling of T cell receptors from sequence.

PubMed

Gowthaman, Ragul; Pierce, Brian G

2018-05-22

T cell receptors (TCRs), along with antibodies, are responsible for specific antigen recognition in the adaptive immune response, and millions of unique TCRs are estimated to be present in each individual. Understanding the structural basis of TCR targeting has implications in vaccine design, autoimmunity, as well as T cell therapies for cancer. Given advances in deep sequencing leading to immune repertoire-level TCR sequence data, fast and accurate modeling methods are needed to elucidate shared and unique 3D structural features of these molecules which lead to their antigen targeting and cross-reactivity. We developed a new algorithm in the program Rosetta to model TCRs from sequence, and implemented this functionality in a web server, TCRmodel. This web server provides an easy to use interface, and models are generated quickly that users can investigate in the browser and download. Benchmarking of this method using a set of nonredundant recently released TCR crystal structures shows that models are accurate and compare favorably to models from another available modeling method. This server enables the community to obtain insights into TCRs of interest, and can be combined with methods to model and design TCR recognition of antigens. The TCRmodel server is available at: http://tcrmodel.ibbr.umd.edu/.

A dictionary server for supplying context sensitive medical knowledge.

PubMed

Ruan, W; Bürkle, T; Dudeck, J

2000-01-01

The Giessen Data Dictionary Server (GDDS), developed at Giessen University Hospital, integrates clinical systems with on-line, context sensitive medical knowledge to help with making medical decisions. By "context" we mean the clinical information that is being presented at the moment the information need is occurring. The dictionary server makes use of a semantic network supported by a medical data dictionary to link terms from clinical applications to their proper information sources. It has been designed to analyze the network structure itself instead of knowing the layout of the semantic net in advance. This enables us to map appropriate information sources to various clinical applications, such as nursing documentation, drug prescription and cancer follow up systems. This paper describes the function of the dictionary server and shows how the knowledge stored in the semantic network is used in the dictionary service.

Can "patient keeper" help in-patients?

PubMed

Al-Hinnawi, M F

2009-06-01

The aim of this paper is to present our "Patient Keeper" application, which is a client-server medical application. "Patient Keeper" is designed to run on a mobile phone for the client application and on a PC for the server application using J2ME and JAVA2, respectively. This application can help doctors during visits to their patients in hospitals. The client application allows doctors to store on their mobile phones the results of their diagnoses and findings such as temperature, blood pressure, medications, analysis, etc., and send this information to the server via short message service (SMS) for storage in a database. The server can also respond to any request from the client and send the result via Bluetooth, infrared, or over the air. Experimental results showed a significant improvement of the healthcare delivery and reduction for in-patient stay.

A Hyporheic Mesocosm Experiment: Influence of Quantity and Quality of stream-source DOC on Rates of Hyporheic Metabolism

NASA Astrophysics Data System (ADS)

Serchan, S. P.; Wondzell, S. M.; Haggerty, R.; Pennington, R.; Feris, K. P.; Sanfilippo, A. R.; Reeder, W. J.; Tonina, D.

2016-12-01

Hyporheic zone biogeochemical processes can influence stream water chemistry. Some estimates show that 50-90% stream water CO2 is produced in the hyporheic zone through heterotrophic metabolism of organic matter, usually supplied from the stream as dissolved organic carbon (DOC). Preliminary results from our well network at the HJ Andrews WS1, indicate that dissolved inorganic carbon (DIC) is 1.5-2 times higher in the hyporheic zone than in stream water. Conversely, DOC (mg/L) is 1.5 times higher in stream water than in the hyporheic zone throughout the year. Overall, the hyporheic zone appears to be a net source of DIC. However, the increase in DIC along hyporheic flow paths is approximately 10-times greater than the loss of DOC, suggesting that metabolism of buried particulate organic carbon (POC) is a major source of organic carbon for microbial metabolism. However, we cannot completely rule out alternative sources of DIC, especially those originating in the overlying riparian soil, because hyporheic processes are difficult to isolate in well networks. To study hyporheic zone biogeochemical processes, particularly the transformation of organic carbon to inorganic carbon species, we designed and built six replicate 2-m long hyporheic mesocosms in which we are conducting DOC amendment experiments. We examine the role of DOC quality and quantity on hyporheic respiration by injecting labile (acetate) and refractory (fulvic acid) organic carbon and comparing rates of O2 consumption, DOC loss, and DIC gains against a control. We expect that stream source DOC is limiting in this small headwater stream, forcing hyporheic metabolism to rely on buried POC. However, the long burial time of POC suggests it is likely of low quality so that supplying labile DOC in stream water should shift hyporheic metabolism away from POC rather than increase the overall rate of metabolism. Future experiments will examine natural sources of DOC (stream periphyton, leaf, and soil humic horizon leachates), the breakdown of wood buried in the hyporheic zone, and the role of temperature and nutrients in controlling the rate at which buried POC is metabolized.

Design and development of a mobile system for supporting emergency triage.

PubMed

Michalowski, W; Slowinski, R; Wilk, S; Farion, K J; Pike, J; Rubin, S

2005-01-01

Our objective was to design and develop a mobile clinical decision support system for emergency triage of different acute pain presentations. The system should interact with existing hospital information systems, run on mobile computing devices (handheld computers) and be suitable for operation in weak-connectivity conditions (with unstable connections between mobile clients and a server). The MET (Mobile Emergency Triage) system was designed following an extended client-server architecture. The client component, responsible for triage decision support, is built as a knowledge-based system, with domain ontology separated from generic problem solving methods and used for the automatic creation of a user interface. The MET system is well suited for operation in the Emergency Department of a hospital. The system's external interactions are managed by the server, while the MET clients, running on handheld computers are used by clinicians for collecting clinical data and supporting triage at the bedside. The functionality of the MET client is distributed into specialized modules, responsible for triaging specific types of acute pain presentations. The modules are stored on the server, and on request they can be transferred and executed on the mobile clients. The modular design provides for easy extension of the system's functionality. A clinical trial of the MET system validated the appropriateness of the system's design, and proved the usefulness and acceptance of the system in clinical practice. The MET system captures the necessary hospital data, allows for entry of patient information, and provides triage support. By operating on handheld computers, it fits into the regular emergency department workflow without introducing any hindrances or disruptions. It supports triage anytime and anywhere, directly at the point of care, and also can be used as an electronic patient chart, facilitating structured data collection.

Built-In Diagnostics (BID) Of Equipment/Systems

NASA Technical Reports Server (NTRS)

Granieri, Michael N.; Giordano, John P.; Nolan, Mary E.

1995-01-01

Diagnostician(TM)-on-Chip (DOC) technology identifies faults and commands systems reconfiguration. Smart microcontrollers operating in conjunction with other system-control circuits, command self-correcting system/equipment actions in real time. DOC microcontroller generates commands for associated built-in test equipment to stimulate unit of equipment diagnosed, collects and processes response data obtained by built-in test equipment, and performs diagnostic reasoning on response data, using diagnostic knowledge base derived from design data.

CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction.

PubMed

Xu, Youjun; Wang, Shiwei; Hu, Qiwan; Gao, Shuaishi; Ma, Xiaomin; Zhang, Weilin; Shen, Yihang; Chen, Fangjin; Lai, Luhua; Pei, Jianfeng

2018-05-10

CavityPlus is a web server that offers protein cavity detection and various functional analyses. Using protein three-dimensional structural information as the input, CavityPlus applies CAVITY to detect potential binding sites on the surface of a given protein structure and rank them based on ligandability and druggability scores. These potential binding sites can be further analysed using three submodules, CavPharmer, CorrSite, and CovCys. CavPharmer uses a receptor-based pharmacophore modelling program, Pocket, to automatically extract pharmacophore features within cavities. CorrSite identifies potential allosteric ligand-binding sites based on motion correlation analyses between cavities. CovCys automatically detects druggable cysteine residues, which is especially useful to identify novel binding sites for designing covalent allosteric ligands. Overall, CavityPlus provides an integrated platform for analysing comprehensive properties of protein binding cavities. Such analyses are useful for many aspects of drug design and discovery, including target selection and identification, virtual screening, de novo drug design, and allosteric and covalent-binding drug design. The CavityPlus web server is freely available at http://repharma.pku.edu.cn/cavityplus or http://www.pkumdl.cn/cavityplus.

Design of information systems for population data collection based on client-server at Bagolo village

NASA Astrophysics Data System (ADS)

Nugraha, Ucu

2017-06-01

Village is the level under the sub-district level in the governmental system in a region where the information system of population data service is majority provided in a manual system. However, such systems frequently lead to invalid data in addition to the available data that does not correspond to the facts as the impact of frequent errors in the process of data collection related to population including the data of the elderly and the process of data transfer. Similarly, the data correspondences such as death certificate, birth certificate, a certificate of domicile change, and so forth, have their own problems. Data archives are frequently non-systematic because they are not organized properly or not stored in a database. Nevertheless, information service system for population census at this level can assist government agencies, especially in the management of population census at the village level. A designed system can make the process of a population census easier. It is initiated by the submission of population letter by each citizen who comes to the village administrative office. Population census information system based on client-server at Bagolo Village was designed in effective and non-complicated workflow and interface design. By using the client-server as the basis, the data will be stored centrally on the server, so it can reduce data duplication and data loss. Therefore, when the local governments require data information related to the population data of a village, they can obtain it easily without the need to collect the data directly at the respective village.

Distributed control system for demand response by servers

NASA Astrophysics Data System (ADS)

Hall, Joseph Edward

Within the broad topical designation of smart grid, research in demand response, or demand-side management, focuses on investigating possibilities for electrically powered devices to adapt their power consumption patterns to better match generation and more efficiently integrate intermittent renewable energy sources, especially wind. Devices such as battery chargers, heating and cooling systems, and computers can be controlled to change the time, duration, and magnitude of their power consumption while still meeting workload constraints such as deadlines and rate of throughput. This thesis presents a system by which a computer server, or multiple servers in a data center, can estimate the power imbalance on the electrical grid and use that information to dynamically change the power consumption as a service to the grid. Implementation on a testbed demonstrates the system with a hypothetical but realistic usage case scenario of an online video streaming service in which there are workloads with deadlines (high-priority) and workloads without deadlines (low-priority). The testbed is implemented with real servers, estimates the power imbalance from the grid frequency with real-time measurements of the live outlet, and uses a distributed, real-time algorithm to dynamically adjust the power consumption of the servers based on the frequency estimate and the throughput of video transcoder workloads. Analysis of the system explains and justifies multiple design choices, compares the significance of the system in relation to similar publications in the literature, and explores the potential impact of the system.

An accountability server for health care information systems.

PubMed

Kowalski, S

1994-02-01

The paper starts off by first briefly discussing the necessary ethical, legal and administrative/management controls that are required before the mechanisms of accountability controls can be implemented in automated clinical patient record systems. After these social aspects are discussed the technical aspects of the ALS are outlined. The security concepts of the ECMA framework are reviewed and used to explain the technical design of the ALS. A walk-through of the server in a typical patient record transaction is used to explain the operations of the server. The paper concludes with a general discussion of the usefulness of accountability mechanisms in making security in health care information work in practice.

An Improvement of Robust Biometrics-Based Authentication and Key Agreement Scheme for Multi-Server Environments Using Smart Cards

PubMed Central

Moon, Jongho; Choi, Younsung; Jung, Jaewook; Won, Dongho

2015-01-01

In multi-server environments, user authentication is a very important issue because it provides the authorization that enables users to access their data and services; furthermore, remote user authentication schemes for multi-server environments have solved the problem that has arisen from user’s management of different identities and passwords. For this reason, numerous user authentication schemes that are designed for multi-server environments have been proposed over recent years. In 2015, Lu et al. improved upon Mishra et al.’s scheme, claiming that their remote user authentication scheme is more secure and practical; however, we found that Lu et al.’s scheme is still insecure and incorrect. In this paper, we demonstrate that Lu et al.’s scheme is vulnerable to outsider attack and user impersonation attack, and we propose a new biometrics-based scheme for authentication and key agreement that can be used in multi-server environments; then, we show that our proposed scheme is more secure and supports the required security properties. PMID:26709702

Security Enhanced Anonymous Multiserver Authenticated Key Agreement Scheme Using Smart Cards and Biometrics

PubMed Central

Choi, Younsung; Nam, Junghyun; Lee, Donghoon; Kim, Jiye; Jung, Jaewook; Won, Dongho

2014-01-01

An anonymous user authentication scheme allows a user, who wants to access a remote application server, to achieve mutual authentication and session key establishment with the server in an anonymous manner. To enhance the security of such authentication schemes, recent researches combined user's biometrics with a password. However, these authentication schemes are designed for single server environment. So when a user wants to access different application servers, the user has to register many times. To solve this problem, Chuang and Chen proposed an anonymous multiserver authenticated key agreement scheme using smart cards together with passwords and biometrics. Chuang and Chen claimed that their scheme not only supports multiple servers but also achieves various security requirements. However, we show that this scheme is vulnerable to a masquerade attack, a smart card attack, a user impersonation attack, and a DoS attack and does not achieve perfect forward secrecy. We also propose a security enhanced anonymous multiserver authenticated key agreement scheme which addresses all the weaknesses identified in Chuang and Chen's scheme. PMID:25276847

A Design of a Network Model to the Electric Power Trading System Using Web Services

NASA Astrophysics Data System (ADS)

Maruo, Tomoaki; Matsumoto, Keinosuke; Mori, Naoki; Kitayama, Masashi; Izumi, Yoshio

Web services are regarded as a new application paradigm in the world of the Internet. On the other hand, many business models of a power trading system has been proposed to aim at load reduction by consumers cooperating with electric power suppliers in an electric power market. Then, we propose a network model of power trading system using Web service in this paper. The adaptability of Web services to power trading system was checked in the prototype of our network model and we got good results for it. Each server provides functions as a SOAP server, and it is coupled loosely with each other through SOAP. Storing SOAP message in HTTP packet can establish the penetration communication way that is not conscious of a firewall. Switching of a dynamic server is possible by means of rewriting the server point information on WSDL at the time of obstacle generating.

A dictionary server for supplying context sensitive medical knowledge.

PubMed Central

Ruan, W.; Bürkle, T.; Dudeck, J.

2000-01-01

The Giessen Data Dictionary Server (GDDS), developed at Giessen University Hospital, integrates clinical systems with on-line, context sensitive medical knowledge to help with making medical decisions. By "context" we mean the clinical information that is being presented at the moment the information need is occurring. The dictionary server makes use of a semantic network supported by a medical data dictionary to link terms from clinical applications to their proper information sources. It has been designed to analyze the network structure itself instead of knowing the layout of the semantic net in advance. This enables us to map appropriate information sources to various clinical applications, such as nursing documentation, drug prescription and cancer follow up systems. This paper describes the function of the dictionary server and shows how the knowledge stored in the semantic network is used in the dictionary service. PMID:11079978

76 FR 14647 - Sabine National Forest Resource Advisory Committee Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-17

... E. Taylor, Jr., Designated Federal Officer, Sabine National Forest, 5050 State Hwy. 21 E., Hemphill.... William E. Taylor, Jr., Designated Federal Officer, Sabine National Forest RAC. [FR Doc. 2011-5927 Filed 3...

PlanetServer: Innovative approaches for the online analysis of hyperspectral satellite data from Mars

NASA Astrophysics Data System (ADS)

Oosthoek, J. H. P.; Flahaut, J.; Rossi, A. P.; Baumann, P.; Misev, D.; Campalani, P.; Unnithan, V.

2014-06-01

PlanetServer is a WebGIS system, currently under development, enabling the online analysis of Compact Reconnaissance Imaging Spectrometer (CRISM) hyperspectral data from Mars. It is part of the EarthServer project which builds infrastructure for online access and analysis of huge Earth Science datasets. Core functionality consists of the rasdaman Array Database Management System (DBMS) for storage, and the Open Geospatial Consortium (OGC) Web Coverage Processing Service (WCPS) for data querying. Various WCPS queries have been designed to access spatial and spectral subsets of the CRISM data. The client WebGIS, consisting mainly of the OpenLayers javascript library, uses these queries to enable online spatial and spectral analysis. Currently the PlanetServer demonstration consists of two CRISM Full Resolution Target (FRT) observations, surrounding the NASA Curiosity rover landing site. A detailed analysis of one of these observations is performed in the Case Study section. The current PlanetServer functionality is described step by step, and is tested by focusing on detecting mineralogical evidence described in earlier Gale crater studies. Both the PlanetServer methodology and its possible use for mineralogical studies will be further discussed. Future work includes batch ingestion of CRISM data and further development of the WebGIS and analysis tools.

Using Continuous In-situ Measurement of Fluorescence to Reveal Hot Spots and Hot Moments of Dissolved Organic Matter Dynamics in a Forested Watershed

NASA Astrophysics Data System (ADS)

Ryan, K. A.; Hosen, J. D.; Raymond, P. A.; Stubbins, A.; Shanley, J. B.

2017-12-01

River systems serve as net carbon exporters from land to the ocean, fueling downstream aquatic ecosystem food webs. Fluorescence signatures of aquatic organic matter can be used as a proxy for dissolved organic carbon (DOC) concentration and can characterize DOC composition, reactivity, and source to improve our understanding of ecological processes. In-situ measurement of fluorescence using fifteen-minute interval data logging allows greater temporal resolution than laboratory studies. However, in-situ data must be corrected for interferences from temperature, absorbance and turbidity changes occurring in the field. We installed multiparameter water quality sondes (Eureka Mantas) and in-situ fluorometers (Turner Designs Cyclops) at sites nested within streams and riparian zones in the Sleepers River Research Watershed in Vermont in 2017. We coupled these measurements with simultaneous intensive field sampling campaigns and laboratory analysis of DOC and fluorescence Excitation-Emission Matrices. The data loggers from the nested sites recorded fluorescence peaks responding to discharge events and tracked changes in fluorescence occurring from upstream to downstream sites. Laboratory results confirm a nonlinear, hysteretic relationship between discharge and DOC where peak DOC lags peak discharge. This hysteresis is predicted to be controlled by multiple flow paths and DOC sources (i.e. groundwater, overland flow). We conclude that continuous in-situ records of river water fluorescence can be used to inform ecological processes and test new hypotheses concerning dissolved organic matter dynamics in watersheds.

An analysis of fuel conserving operational procedures and design modifications for bomber/transport aircraft. Volume I. Executive summary. Final report, 7 June 1976-7 July 1978

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aggarwal, R.

1978-07-01

Various proposed improvements in the design and operational procedures for bomber/transport aircraft are evaluated. The evaluation is performed in terms of the estimated savings in fuel consumption and in Direct Operating Cost (DOC). As an aid in the evaluation of design modifications, graphs of fuel and DOC savings as a function of the design parameters are developed. These graphs are based on actual mission trajectory data rather than some type trajectory profile. The actual mission data is presented in terms of histograms which provide statistical information concerning altitude, air speed, take-off weight, landing weights, and mission time. Separate analyses aremore » performed on the following aircraft: the B-52G, the B-52H, the KC-135, the C-141, the C-130, and the C-5A.« less

An analysis of fuel conserving operational procedures and design modifications for bomber/transport aircraft. volume ii. Final report, 7 June 1976-7 July 1978

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aggarwal, R.K.

1978-07-01

Various proposed improvements in the design and operational procedures for bomber/transport aircraft are evaluated. The evaluation is performed in terms of the estimated savings in fuel consumption and in Direct Operating Cost (DOC). As an aid in the evaluation of design modifications, graphs of fuel and DOC savings as a function of the design parameters are developed. These graphs are based on actual mission trajectory data rather than some typical trajectory profile. The actual mission data is presented in terms of histograms which provide statistical information concerning altitude, air speed, take-off weight, landing weight, and mission time. Separate analyses aremore » performed on the following aircraft: the B-52G, the B-52H, the KC-135, the C-141, the C-130, and the C-5A. (Author)« less

Design and Analysis of a Model Reconfigurable Cyber-Exercise Laboratory (RCEL) for Information Assurance Education

DTIC Science & Technology

2004-03-01

with MySQL . This choice was made because MySQL is open source. Any significant database engine such as Oracle or MS- SQL or even MS Access can be used...10 Figure 6. The DoD vs . Commercial Life Cycle...necessarily be interested in SCADA network security 13. MySQL (Database server) – This station represents a typical data server for a web page

System Design for Navy Occupational Standards Development

DTIC Science & Technology

2014-07-01

including, Mr. Thomas Crain, Deputy Director, Workforce Classifications Department, LCDR Juan Carrasco, Michele Jackson, and Johnny Powell. David...and Carrasco, Juan ; Navy Job Analysis Management Project Description, NAVMAC, January 2010. 34  Lists of validated tasks, sorted by Functional...34 runat="server"> <div> <rsweb:ReportViewer ID="ReportViewerSample" runat="server" Font -Names="Verdana" Font -Size=Ŝpt

Defense in Depth Added to Malicious Activities Simulation Tools (MAST)

DTIC Science & Technology

2015-09-01

cipher suites. The TLS Handshake is a combination of three components: handshake, change cipher spec, and alert. 41 (1) The Handshake ( Hello ) The...TLS Handshake, specifically the “ Hello ” portion, is designed to negotiate session parameters (cipher suite). The client informs the server of the...protocols and standards that it supports and then the server selects the highest common protocols and standards. Specifically, the Client Hello message

The PARIGA server for real time filtering and analysis of reciprocal BLAST results.

PubMed

Orsini, Massimiliano; Carcangiu, Simone; Cuccuru, Gianmauro; Uva, Paolo; Tramontano, Anna

2013-01-01

BLAST-based similarity searches are commonly used in several applications involving both nucleotide and protein sequences. These applications span from simple tasks such as mapping sequences over a database to more complex procedures as clustering or annotation processes. When the amount of analysed data increases, manual inspection of BLAST results become a tedious procedure. Tools for parsing or filtering BLAST results for different purposes are then required. We describe here PARIGA (http://resources.bioinformatica.crs4.it/pariga/), a server that enables users to perform all-against-all BLAST searches on two sets of sequences selected by the user. Moreover, since it stores the two BLAST output in a python-serialized-objects database, results can be filtered according to several parameters in real-time fashion, without re-running the process and avoiding additional programming efforts. Results can be interrogated by the user using logical operations, for example to retrieve cases where two queries match same targets, or when sequences from the two datasets are reciprocal best hits, or when a query matches a target in multiple regions. The Pariga web server is designed to be a helpful tool for managing the results of sequence similarity searches. The design and implementation of the server renders all operations very fast and easy to use.

SDS: A Framework for Scientific Data Services

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dong, Bin; Byna, Surendra; Wu, Kesheng

2013-10-31

Large-scale scientific applications typically write their data to parallel file systems with organizations designed to achieve fast write speeds. Analysis tasks frequently read the data in a pattern that is different from the write pattern, and therefore experience poor I/O performance. In this paper, we introduce a prototype framework for bridging the performance gap between write and read stages of data access from parallel file systems. We call this framework Scientific Data Services, or SDS for short. This initial implementation of SDS focuses on reorganizing previously written files into data layouts that benefit read patterns, and transparently directs read callsmore » to the reorganized data. SDS follows a client-server architecture. The SDS Server manages partial or full replicas of reorganized datasets and serves SDS Clients' requests for data. The current version of the SDS client library supports HDF5 programming interface for reading data. The client library intercepts HDF5 calls and transparently redirects them to the reorganized data. The SDS client library also provides a querying interface for reading part of the data based on user-specified selective criteria. We describe the design and implementation of the SDS client-server architecture, and evaluate the response time of the SDS Server and the performance benefits of SDS.« less

Using NVMe Gen3 PCIe SSD Cards in High-density Servers for High-performance Big Data Transfer Over Multiple Network Channels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fang, Chin

This Technical Note describes how the Zettar team came up with a data transfer cluster design that convincingly proved the feasibility of using high-density servers for high-performance Big Data transfers. It then outlines the tests, operations, and observations that address a potential over-heating concern regarding the use of Non-Volatile Memory Host Controller Interface Specification (NVMHCI aka NVM Express or NVMe) Gen 3 PCIe SSD cards in high-density servers. Finally, it points out the possibility of developing a new generation of high-performance Science DMZ data transfer system for the data-intensive research community and commercial enterprises.

An object-oriented design for automated navigation of semantic networks inside a medical data dictionary.

PubMed

Ruan, W; Bürkle, T; Dudeck, J

2000-01-01

In this paper we present a data dictionary server for the automated navigation of information sources. The underlying knowledge is represented within a medical data dictionary. The mapping between medical terms and information sources is based on a semantic network. The key aspect of implementing the dictionary server is how to represent the semantic network in a way that is easier to navigate and to operate, i.e. how to abstract the semantic network and to represent it in memory for various operations. This paper describes an object-oriented design based on Java that represents the semantic network in terms of a group of objects. A node and its relationships to its neighbors are encapsulated in one object. Based on such a representation model, several operations have been implemented. They comprise the extraction of parts of the semantic network which can be reached from a given node as well as finding all paths between a start node and a predefined destination node. This solution is independent of any given layout of the semantic structure. Therefore the module, called Giessen Data Dictionary Server can act independent of a specific clinical information system. The dictionary server will be used to present clinical information, e.g. treatment guidelines or drug information sources to the clinician in an appropriate working context. The server is invoked from clinical documentation applications which contain an infobutton. Automated navigation will guide the user to all the information relevant to her/his topic, which is currently available inside our closed clinical network.

Flexible software architecture for user-interface and machine control in laboratory automation.

PubMed

Arutunian, E B; Meldrum, D R; Friedman, N A; Moody, S E

1998-10-01

We describe a modular, layered software architecture for automated laboratory instruments. The design consists of a sophisticated user interface, a machine controller and multiple individual hardware subsystems, each interacting through a client-server architecture built entirely on top of open Internet standards. In our implementation, the user-interface components are built as Java applets that are downloaded from a server integrated into the machine controller. The user-interface client can thereby provide laboratory personnel with a familiar environment for experiment design through a standard World Wide Web browser. Data management and security are seamlessly integrated at the machine-controller layer using QNX, a real-time operating system. This layer also controls hardware subsystems through a second client-server interface. This architecture has proven flexible and relatively easy to implement and allows users to operate laboratory automation instruments remotely through an Internet connection. The software architecture was implemented and demonstrated on the Acapella, an automated fluid-sample-processing system that is under development at the University of Washington.

Design and implementation of a cloud based lithography illumination pupil processing application

NASA Astrophysics Data System (ADS)

Zhang, Youbao; Ma, Xinghua; Zhu, Jing; Zhang, Fang; Huang, Huijie

2017-02-01

Pupil parameters are important parameters to evaluate the quality of lithography illumination system. In this paper, a cloud based full-featured pupil processing application is implemented. A web browser is used for the UI (User Interface), the websocket protocol and JSON format are used for the communication between the client and the server, and the computing part is implemented in the server side, where the application integrated a variety of high quality professional libraries, such as image processing libraries libvips and ImageMagic, automatic reporting system latex, etc., to support the program. The cloud based framework takes advantage of server's superior computing power and rich software collections, and the program could run anywhere there is a modern browser due to its web UI design. Compared to the traditional way of software operation model: purchased, licensed, shipped, downloaded, installed, maintained, and upgraded, the new cloud based approach, which is no installation, easy to use and maintenance, opens up a new way. Cloud based application probably is the future of the software development.

EarthServer - 3D Visualization on the Web

NASA Astrophysics Data System (ADS)

Wagner, Sebastian; Herzig, Pasquale; Bockholt, Ulrich; Jung, Yvonne; Behr, Johannes

2013-04-01

EarthServer (www.earthserver.eu), funded by the European Commission under its Seventh Framework Program, is a project to enable the management, access and exploration of massive, multi-dimensional datasets using Open GeoSpatial Consortium (OGC) query and processing language standards like WCS 2.0 and WCPS. To this end, a server/client architecture designed to handle Petabyte/Exabyte volumes of multi-dimensional data is being developed and deployed. As an important part of the EarthServer project, six Lighthouse Applications, major scientific data exploitation initiatives, are being established to make cross-domain, Earth Sciences related data repositories available in an open and unified manner, as service endpoints based on solutions and infrastructure developed within the project. Clients technology developed and deployed in EarthServer ranges from mobile and web clients to immersive virtual reality systems, all designed to interact with a physically and logically distributed server infrastructure using exclusively OGC standards. In this contribution, we would like to present our work on a web-based 3D visualization and interaction client for Earth Sciences data using only technology found in standard web browsers without requiring the user to install plugins or addons. Additionally, we are able to run the earth data visualization client on a wide range of different platforms with very different soft- and hardware requirements such as smart phones (e.g. iOS, Android), different desktop systems etc. High-quality, hardware-accelerated visualization of 3D and 4D content in standard web browsers can be realized now and we believe it will become more and more common to use this fast, lightweight and ubiquitous platform to provide insights into big datasets without requiring the user to set up a specialized client first. With that in mind, we will also point out some of the limitations we encountered using current web technologies. Underlying the EarthServer web client and on top of HTML5, WebGL and JavaScript we have developed the X3DOM framework (www.x3dom.org), which makes possible to embed declarative X3D scenegraphs, an ISO standard XML-based file format for representing 3D computer graphics, directly within HTML, thus enabling developers to rapidly design 3D content that blends seamlessly into HTML interfaces using Javascript. This approach (commonly referred to as a polyfill layer) is used to mimic native web browser support for declarative 3D content and is an important component in our web client architecture.

An Array Library for Microsoft SQL Server with Astrophysical Applications

NASA Astrophysics Data System (ADS)

Dobos, L.; Szalay, A. S.; Blakeley, J.; Falck, B.; Budavári, T.; Csabai, I.

2012-09-01

Today's scientific simulations produce output on the 10-100 TB scale. This unprecedented amount of data requires data handling techniques that are beyond what is used for ordinary files. Relational database systems have been successfully used to store and process scientific data, but the new requirements constantly generate new challenges. Moving terabytes of data among servers on a timely basis is a tough problem, even with the newest high-throughput networks. Thus, moving the computations as close to the data as possible and minimizing the client-server overhead are absolutely necessary. At least data subsetting and preprocessing have to be done inside the server process. Out of the box commercial database systems perform very well in scientific applications from the prospective of data storage optimization, data retrieval, and memory management but lack basic functionality like handling scientific data structures or enabling advanced math inside the database server. The most important gap in Microsoft SQL Server is the lack of a native array data type. Fortunately, the technology exists to extend the database server with custom-written code that enables us to address these problems. We present the prototype of a custom-built extension to Microsoft SQL Server that adds array handling functionality to the database system. With our Array Library, fix-sized arrays of all basic numeric data types can be created and manipulated efficiently. Also, the library is designed to be able to be seamlessly integrated with the most common math libraries, such as BLAS, LAPACK, FFTW, etc. With the help of these libraries, complex operations, such as matrix inversions or Fourier transformations, can be done on-the-fly, from SQL code, inside the database server process. We are currently testing the prototype with two different scientific data sets: The Indra cosmological simulation will use it to store particle and density data from N-body simulations, and the Milky Way Laboratory project will use it to store galaxy simulation data.

14 CFR 23.753 - Main float design.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 14 Aeronautics and Space 1 2010-01-01 2010-01-01 false Main float design. 23.753 Section 23.753... STANDARDS: NORMAL, UTILITY, ACROBATIC, AND COMMUTER CATEGORY AIRPLANES Design and Construction Floats and Hulls § 23.753 Main float design. Each seaplane main float must meet the requirements of § 23.521. [Doc...

AsteriX: a Web server to automatically extract ligand coordinates from figures in PDF articles.

PubMed

Lounnas, V; Vriend, G

2012-02-27

Coordinates describing the chemical structures of small molecules that are potential ligands for pharmaceutical targets are used at many stages of the drug design process. The coordinates of the vast majority of ligands can be obtained from either publicly accessible or commercial databases. However, interesting ligands sometimes are only available from the scientific literature, in which case their coordinates need to be reconstructed manually--a process that consists of a series of time-consuming steps. We present a Web server that helps reconstruct the three-dimensional (3D) coordinates of ligands for which a two-dimensional (2D) picture is available in a PDF file. The software, called AsteriX, analyses every picture contained in the PDF file and attempts to determine automatically whether or not it contains ligands. Areas in pictures that may contain molecular structures are processed to extract connectivity and atom type information that allow coordinates to be subsequently reconstructed. The AsteriX Web server was tested on a series of articles containing a large diversity in graphical representations. In total, 88% of 3249 ligand structures present in the test set were identified as chemical diagrams. Of these, about half were interpreted correctly as 3D structures, and a further one-third required only minor manual corrections. It is principally impossible to always correctly reconstruct 3D coordinates from pictures because there are many different protocols for drawing a 2D image of a ligand, but more importantly a wide variety of semantic annotations are possible. The AsteriX Web server therefore includes facilities that allow the users to augment partial or partially correct 3D reconstructions. All 3D reconstructions are submitted, checked, and corrected by the users domain at the server and are freely available for everybody. The coordinates of the reconstructed ligands are made available in a series of formats commonly used in drug design research. The AsteriX Web server is freely available at http://swift.cmbi.ru.nl/bitmapb/.

The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families.

PubMed

Suplatov, Dmitry; Sharapova, Yana; Timonina, Daria; Kopylov, Kirill; Švedas, Vytas

2018-04-01

The visualCMAT web-server was designed to assist experimental research in the fields of protein/enzyme biochemistry, protein engineering, and drug discovery by providing an intuitive and easy-to-use interface to the analysis of correlated mutations/co-evolving residues. Sequence and structural information describing homologous proteins are used to predict correlated substitutions by the Mutual information-based CMAT approach, classify them into spatially close co-evolving pairs, which either form a direct physical contact or interact with the same ligand (e.g. a substrate or a crystallographic water molecule), and long-range correlations, annotate and rank binding sites on the protein surface by the presence of statistically significant co-evolving positions. The results of the visualCMAT are organized for a convenient visual analysis and can be downloaded to a local computer as a content-rich all-in-one PyMol session file with multiple layers of annotation corresponding to bioinformatic, statistical and structural analyses of the predicted co-evolution, or further studied online using the built-in interactive analysis tools. The online interactivity is implemented in HTML5 and therefore neither plugins nor Java are required. The visualCMAT web-server is integrated with the Mustguseal web-server capable of constructing large structure-guided sequence alignments of protein families and superfamilies using all available information about their structures and sequences in public databases. The visualCMAT web-server can be used to understand the relationship between structure and function in proteins, implemented at selecting hotspots and compensatory mutations for rational design and directed evolution experiments to produce novel enzymes with improved properties, and employed at studying the mechanism of selective ligand's binding and allosteric communication between topologically independent sites in protein structures. The web-server is freely available at https://biokinet.belozersky.msu.ru/visualcmat and there are no login requirements.

Graphic Server: A real time system for displaying and monitoring telemetry data of several satellites

NASA Technical Reports Server (NTRS)

Douard, Stephane

1994-01-01

Known as a Graphic Server, the system presented was designed for the control ground segment of the Telecom 2 satellites. It is a tool used to dynamically display telemetry data within graphic pages, also known as views. The views are created off-line through various utilities and then, on the operator's request, displayed and animated in real time as data is received. The system was designed as an independent component, and is installed in different Telecom 2 operational control centers. It enables operators to monitor changes in the platform and satellite payloads in real time. It has been in operation since December 1991.

Web design and development for centralize area radiation monitoring system in Malaysian Nuclear Agency

NASA Astrophysics Data System (ADS)

Ibrahim, Maslina Mohd; Yussup, Nolida; Haris, Mohd Fauzi; Soh @ Shaari, Syirrazie Che; Azman, Azraf; Razalim, Faizal Azrin B. Abdul; Yapp, Raymond; Hasim, Harzawardi; Aslan, Mohd Dzul Aiman

2017-01-01

One of the applications for radiation detector is area monitoring which is crucial for safety especially at a place where radiation source is involved. An environmental radiation monitoring system is a professional system that combines flexibility and ease of use for data collection and monitoring. Nowadays, with the growth of technology, devices and equipment can be connected to the network and Internet to enable online data acquisition. This technology enables data from the area monitoring devices to be transmitted to any place and location directly and faster. In Nuclear Malaysia, area radiation monitor devices are located at several selective locations such as laboratories and radiation facility. This system utilizes an Ethernet as a communication media for data acquisition of the area radiation levels from radiation detectors and stores the data at a server for recording and analysis. This paper discusses on the design and development of website that enable all user in Nuclear Malaysia to access and monitor the radiation level for each radiation detectors at real time online. The web design also included a query feature for history data from various locations online. The communication between the server's software and web server is discussed in detail in this paper.

R.E.D. Server: a web service for deriving RESP and ESP charges and building force field libraries for new molecules and molecular fragments.

PubMed

Vanquelef, Enguerran; Simon, Sabrina; Marquant, Gaelle; Garcia, Elodie; Klimerak, Geoffroy; Delepine, Jean Charles; Cieplak, Piotr; Dupradeau, François-Yves

2011-07-01

R.E.D. Server is a unique, open web service, designed to derive non-polarizable RESP and ESP charges and to build force field libraries for new molecules/molecular fragments. It provides to computational biologists the means to derive rigorously molecular electrostatic potential-based charges embedded in force field libraries that are ready to be used in force field development, charge validation and molecular dynamics simulations. R.E.D. Server interfaces quantum mechanics programs, the RESP program and the latest version of the R.E.D. tools. A two step approach has been developed. The first one consists of preparing P2N file(s) to rigorously define key elements such as atom names, topology and chemical equivalencing needed when building a force field library. Then, P2N files are used to derive RESP or ESP charges embedded in force field libraries in the Tripos mol2 format. In complex cases an entire set of force field libraries or force field topology database is generated. Other features developed in R.E.D. Server include help services, a demonstration, tutorials, frequently asked questions, Jmol-based tools useful to construct PDB input files and parse R.E.D. Server outputs as well as a graphical queuing system allowing any user to check the status of R.E.D. Server jobs.

Design of SIP transformation server for efficient media negotiation

NASA Astrophysics Data System (ADS)

Pack, Sangheon; Paik, Eun Kyoung; Choi, Yanghee

2001-07-01

Voice over IP (VoIP) is one of the advanced services supported by the next generation mobile communication. VoIP should support various media formats and terminals existing together. This heterogeneous environment may prevent diverse users from establishing VoIP sessions among them. To solve the problem an efficient media negotiation mechanism is required. In this paper, we propose the efficient media negotiation architecture using the transformation server and the Intelligent Location Server (ILS). The transformation server is an extended Session Initiation Protocol (SIP) proxy server. It can modify an unacceptable session INVITE message into an acceptable one using the ILS. The ILS is a directory server based on the Lightweight Directory Access Protocol (LDAP) that keeps userí*s location information and available media information. The proposed architecture can eliminate an unnecessary response and re-INVITE messages of the standard SIP architecture. It takes only 1.5 round trip times to negotiate two different media types while the standard media negotiation mechanism takes 2.5 round trip times. The extra processing time in message handling is negligible in comparison to the reduced round trip time. The experimental results show that the session setup time in the proposed architecture is less than the setup time in the standard SIP. These results verify that the proposed media negotiation mechanism is more efficient in solving diversity problems.

Vfold: a web server for RNA structure and folding thermodynamics prediction.

PubMed

Xu, Xiaojun; Zhao, Peinan; Chen, Shi-Jie

2014-01-01

The ever increasing discovery of non-coding RNAs leads to unprecedented demand for the accurate modeling of RNA folding, including the predictions of two-dimensional (base pair) and three-dimensional all-atom structures and folding stabilities. Accurate modeling of RNA structure and stability has far-reaching impact on our understanding of RNA functions in human health and our ability to design RNA-based therapeutic strategies. The Vfold server offers a web interface to predict (a) RNA two-dimensional structure from the nucleotide sequence, (b) three-dimensional structure from the two-dimensional structure and the sequence, and (c) folding thermodynamics (heat capacity melting curve) from the sequence. To predict the two-dimensional structure (base pairs), the server generates an ensemble of structures, including loop structures with the different intra-loop mismatches, and evaluates the free energies using the experimental parameters for the base stacks and the loop entropy parameters given by a coarse-grained RNA folding model (the Vfold model) for the loops. To predict the three-dimensional structure, the server assembles the motif scaffolds using structure templates extracted from the known PDB structures and refines the structure using all-atom energy minimization. The Vfold-based web server provides a user friendly tool for the prediction of RNA structure and stability. The web server and the source codes are freely accessible for public use at "http://rna.physics.missouri.edu".

Software for Building Models of 3D Objects via the Internet

NASA Technical Reports Server (NTRS)

Schramer, Tim; Jensen, Jeff

2003-01-01

The Virtual EDF Builder (where EDF signifies Electronic Development Fixture) is a computer program that facilitates the use of the Internet for building and displaying digital models of three-dimensional (3D) objects that ordinarily comprise assemblies of solid models created previously by use of computer-aided-design (CAD) programs. The Virtual EDF Builder resides on a Unix-based server computer. It is used in conjunction with a commercially available Web-based plug-in viewer program that runs on a client computer. The Virtual EDF Builder acts as a translator between the viewer program and a database stored on the server. The translation function includes the provision of uniform resource locator (URL) links to other Web-based computer systems and databases. The Virtual EDF builder can be used in two ways: (1) If the client computer is Unix-based, then it can assemble a model locally; the computational load is transferred from the server to the client computer. (2) Alternatively, the server can be made to build the model, in which case the server bears the computational load and the results are downloaded to the client computer or workstation upon completion.

SMPBS: Web server for computing biomolecular electrostatics using finite element solvers of size modified Poisson-Boltzmann equation.

PubMed

Xie, Yang; Ying, Jinyong; Xie, Dexuan

2017-03-30

SMPBS (Size Modified Poisson-Boltzmann Solvers) is a web server for computing biomolecular electrostatics using finite element solvers of the size modified Poisson-Boltzmann equation (SMPBE). SMPBE not only reflects ionic size effects but also includes the classic Poisson-Boltzmann equation (PBE) as a special case. Thus, its web server is expected to have a broader range of applications than a PBE web server. SMPBS is designed with a dynamic, mobile-friendly user interface, and features easily accessible help text, asynchronous data submission, and an interactive, hardware-accelerated molecular visualization viewer based on the 3Dmol.js library. In particular, the viewer allows computed electrostatics to be directly mapped onto an irregular triangular mesh of a molecular surface. Due to this functionality and the fast SMPBE finite element solvers, the web server is very efficient in the calculation and visualization of electrostatics. In addition, SMPBE is reconstructed using a new objective electrostatic free energy, clearly showing that the electrostatics and ionic concentrations predicted by SMPBE are optimal in the sense of minimizing the objective electrostatic free energy. SMPBS is available at the URL: smpbs.math.uwm.edu © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

A Virtual Research Environment for a Secondary Ion Mass Spectrometer (SIMS)

NASA Astrophysics Data System (ADS)

Wiedenbeck, M.; Schäfer, L.; Klump, J.; Galkin, A.

2013-12-01

Overview: This poster describes the development of a Virtual Research Environment for the Secondary Ion Mass Spectrometer (SIMS) at GFZ Potsdam. Background: Secondary Ion Mass Spectrometers (SIMS) are extremely sensitive instruments for analyzing the surfaces of solid and thin film samples. These instruments are rare, expensive and experienced operators are very highly sought after. As such, measurement time is a precious commodity, until now only accessible to small numbers of researchers. The challenge: The Virtual SIMS Project aims to set up a Virtual Research Environment for the operation of the CAMECA IMS 1280-HR instrument at the GFZ Potsdam. The objective of the VRE is to provide SIMS access not only to researchers locally present in Potsdam but also to scientists working with SIMS cooperation partners in e.g., South Africa, Brazil or India. The requirements: The system should address the complete spectrum of laboratory procedures - from online application for measurement time, to remote access for data acquisition to data archiving for the subsequent publication and for future reuse. The approach: The targeted Virtual SIMS Environment will consist of a: 1. Web Server running the Virtual SIMS website providing general information about the project, lab access proposal forms and calendar for the timing of project related tasks. 2. LIMS Server, responsible for scheduling procedures, data management and, if applicable, accounting and billing. 3. Remote SIMS Tool, devoted to the operation of the experiment within a remote control environment. 4. Publishing System, which supports the publication of results in cooperation with the GFZ Library services. 5. Training Simulator, which offers the opportunity to rehearse experiments and to prepare for possible events such as a power outages or interruptions to broadband services. First results: The SIMS Virtual Research Environment will be mainly based on open source software, the only exception being the CAMECA IMS 1280-HR SIMS operating under LabView. The Publishing System will be based on eSciDoc, which is already successfully used by the GFZ scientific library. For the LIMS Server we are currently testing various options. The challenge, however, is the successful integration of all the various components and, where necessary, the definition of useful interfaces between the modules.

Parallel Algorithms for Monte Carlo Particle Transport Simulation on Exascale Computing Architectures

NASA Astrophysics Data System (ADS)

Romano, Paul Kollath

Monte Carlo particle transport methods are being considered as a viable option for high-fidelity simulation of nuclear reactors. While Monte Carlo methods offer several potential advantages over deterministic methods, there are a number of algorithmic shortcomings that would prevent their immediate adoption for full-core analyses. In this thesis, algorithms are proposed both to ameliorate the degradation in parallel efficiency typically observed for large numbers of processors and to offer a means of decomposing large tally data that will be needed for reactor analysis. A nearest-neighbor fission bank algorithm was proposed and subsequently implemented in the OpenMC Monte Carlo code. A theoretical analysis of the communication pattern shows that the expected cost is O( N ) whereas traditional fission bank algorithms are O(N) at best. The algorithm was tested on two supercomputers, the Intrepid Blue Gene/P and the Titan Cray XK7, and demonstrated nearly linear parallel scaling up to 163,840 processor cores on a full-core benchmark problem. An algorithm for reducing network communication arising from tally reduction was analyzed and implemented in OpenMC. The proposed algorithm groups only particle histories on a single processor into batches for tally purposes---in doing so it prevents all network communication for tallies until the very end of the simulation. The algorithm was tested, again on a full-core benchmark, and shown to reduce network communication substantially. A model was developed to predict the impact of load imbalances on the performance of domain decomposed simulations. The analysis demonstrated that load imbalances in domain decomposed simulations arise from two distinct phenomena: non-uniform particle densities and non-uniform spatial leakage. The dominant performance penalty for domain decomposition was shown to come from these physical effects rather than insufficient network bandwidth or high latency. The model predictions were verified with measured data from simulations in OpenMC on a full-core benchmark problem. Finally, a novel algorithm for decomposing large tally data was proposed, analyzed, and implemented/tested in OpenMC. The algorithm relies on disjoint sets of compute processes and tally servers. The analysis showed that for a range of parameters relevant to LWR analysis, the tally server algorithm should perform with minimal overhead. Tests were performed on Intrepid and Titan and demonstrated that the algorithm did indeed perform well over a wide range of parameters. (Copies available exclusively from MIT Libraries, libraries.mit.edu/docs - docs mit.edu)

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

PubMed Central

Conchúir, Shane Ó.; Der, Bryan S.; Drew, Kevin; Kuroda, Daisuke; Xu, Jianqing; Weitzner, Brian D.; Renfrew, P. Douglas; Sripakdeevong, Parin; Borgo, Benjamin; Havranek, James J.; Kuhlman, Brian; Kortemme, Tanja; Bonneau, Richard; Gray, Jeffrey J.; Das, Rhiju

2013-01-01

The Rosetta molecular modeling software package provides experimentally tested and rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, nucleic acids, and a growing number of non-natural polymers. Despite its free availability to academic users and improving documentation, use of Rosetta has largely remained confined to developers and their immediate collaborators due to the code’s difficulty of use, the requirement for large computational resources, and the unavailability of servers for most of the Rosetta applications. Here, we present a unified web framework for Rosetta applications called ROSIE (Rosetta Online Server that Includes Everyone). ROSIE provides (a) a common user interface for Rosetta protocols, (b) a stable application programming interface for developers to add additional protocols, (c) a flexible back-end to allow leveraging of computer cluster resources shared by RosettaCommons member institutions, and (d) centralized administration by the RosettaCommons to ensure continuous maintenance. This paper describes the ROSIE server infrastructure, a step-by-step ‘serverification’ protocol for use by Rosetta developers, and the deployment of the first nine ROSIE applications by six separate developer teams: Docking, RNA de novo, ERRASER, Antibody, Sequence Tolerance, Supercharge, Beta peptide design, NCBB design, and VIP redesign. As illustrated by the number and diversity of these applications, ROSIE offers a general and speedy paradigm for serverification of Rosetta applications that incurs negligible cost to developers and lowers barriers to Rosetta use for the broader biological community. ROSIE is available at http://rosie.rosettacommons.org. PMID:23717507

Efficient monitoring of CRAB jobs at CMS

NASA Astrophysics Data System (ADS)

Silva, J. M. D.; Balcas, J.; Belforte, S.; Ciangottini, D.; Mascheroni, M.; Rupeika, E. A.; Ivanov, T. T.; Hernandez, J. M.; Vaandering, E.

2017-10-01

CRAB is a tool used for distributed analysis of CMS data. Users can submit sets of jobs with similar requirements (tasks) with a single request. CRAB uses a client-server architecture, where a lightweight client, a server, and ancillary services work together and are maintained by CMS operators at CERN. As with most complex software, good monitoring tools are crucial for efficient use and longterm maintainability. This work gives an overview of the monitoring tools developed to ensure the CRAB server and infrastructure are functional, help operators debug user problems, and minimize overhead and operating cost. This work also illustrates the design choices and gives a report on our experience with the tools we developed and the external ones we used.

Next Generation Multimedia Distributed Data Base Systems

NASA Technical Reports Server (NTRS)

Pendleton, Stuart E.

1997-01-01

The paradigm of client/server computing is changing. The model of a server running a monolithic application and supporting clients at the desktop is giving way to a different model that blurs the line between client and server. We are on the verge of plunging into the next generation of computing technology--distributed object-oriented computing. This is not only a change in requirements but a change in opportunities, and requires a new way of thinking for Information System (IS) developers. The information system demands caused by global competition are requiring even more access to decision making tools. Simply, object-oriented technology has been developed to supersede the current design process of information systems which is not capable of handling next generation multimedia.

Efficient Monitoring of CRAB Jobs at CMS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Silva, J. M.D.; Balcas, J.; Belforte, S.

CRAB is a tool used for distributed analysis of CMS data. Users can submit sets of jobs with similar requirements (tasks) with a single request. CRAB uses a client-server architecture, where a lightweight client, a server, and ancillary services work together and are maintained by CMS operators at CERN. As with most complex software, good monitoring tools are crucial for efficient use and longterm maintainability. This work gives an overview of the monitoring tools developed to ensure the CRAB server and infrastructure are functional, help operators debug user problems, and minimize overhead and operating cost. This work also illustrates themore » design choices and gives a report on our experience with the tools we developed and the external ones we used.« less

Clustalnet: the joining of Clustal and CORBA.

PubMed

Campagne, F

2000-07-01

Performing sequence alignment operations from a different program than the original sequence alignment code, and/or through a network connection, is often required. Interactive alignment editors and large-scale biological data analysis are common examples where such a flexibility is important. Interoperability between the alignment engine and the client should be obtained regardless of the architectures and programming languages of the server and client. Clustalnet, a Clustal alignment CORBA server is described, which was developed on the basis of Clustalw. This server brings the robustness of the algorithms and implementations of Clustal to a new level of reuse. A Clustalnet server object can be accessed from a program, transparently through the network. We present interfaces to perform the alignment operations and to control these operations via immutable contexts. The interfaces that select the contexts do not depend on the nature of the operation to be performed, making the design modular. The IDL interfaces presented here are not specific to Clustal and can be implemented on top of different sequence alignment algorithm implementations.

Preliminary Results on Design and Implementation of a Solar Radiation Monitoring System

PubMed Central

Balan, Mugur C.; Damian, Mihai; Jäntschi, Lorentz

2008-01-01

The paper presents a solar radiation monitoring system, using two scientific pyranometers and an on-line computer home-made data acquisition system. The first pyranometer measures the global solar radiation and the other one, which is shaded, measure the diffuse radiation. The values of total and diffuse solar radiation are continuously stored into a database on a server. Original software was created for data acquisition and interrogation of the created system. The server application acquires the data from pyranometers and stores it into a database with a baud rate of one record at 50 seconds. The client-server application queries the database and provides descriptive statistics. A web interface allow to any user to define the including criteria and to obtain the results. In terms of results, the system is able to provide direct, diffuse and total radiation intensities as time series. Our client-server application computes also derivate heats. The ability of the system to evaluate the local solar energy potential is highlighted. PMID:27879746

Integrating RFID technique to design mobile handheld inventory management system

NASA Astrophysics Data System (ADS)

Huang, Yo-Ping; Yen, Wei; Chen, Shih-Chung

2008-04-01

An RFID-based mobile handheld inventory management system is proposed in this paper. Differing from the manual inventory management method, the proposed system works on the personal digital assistant (PDA) with an RFID reader. The system identifies electronic tags on the properties and checks the property information in the back-end database server through a ubiquitous wireless network. The system also provides a set of functions to manage the back-end inventory database and assigns different levels of access privilege according to various user categories. In the back-end database server, to prevent improper or illegal accesses, the server not only stores the inventory database and user privilege information, but also keeps track of the user activities in the server including the login and logout time and location, the records of database accessing, and every modification of the tables. Some experimental results are presented to verify the applicability of the integrated RFID-based mobile handheld inventory management system.

Pathview Web: user friendly pathway visualization and data integration

PubMed Central

Pant, Gaurav; Bhavnasi, Yeshvant K.; Blanchard, Steven G.; Brouwer, Cory

2017-01-01

Abstract Pathway analysis is widely used in omics studies. Pathway-based data integration and visualization is a critical component of the analysis. To address this need, we recently developed a novel R package called Pathview. Pathview maps, integrates and renders a large variety of biological data onto molecular pathway graphs. Here we developed the Pathview Web server, as to make pathway visualization and data integration accessible to all scientists, including those without the special computing skills or resources. Pathview Web features an intuitive graphical web interface and a user centered design. The server not only expands the core functions of Pathview, but also provides many useful features not available in the offline R package. Importantly, the server presents a comprehensive workflow for both regular and integrated pathway analysis of multiple omics data. In addition, the server also provides a RESTful API for programmatic access and conveniently integration in third-party software or workflows. Pathview Web is openly and freely accessible at https://pathview.uncc.edu/. PMID:28482075

Vcs.js - Visualization Control System for the Web

NASA Astrophysics Data System (ADS)

Chaudhary, A.; Lipsa, D.; Doutriaux, C.; Beezley, J. D.; Williams, D. N.; Fries, S.; Harris, M. B.

2016-12-01

VCS is a general purpose visualization library, optimized for climate data, which is part of the UV-CDAT system. It provides a Python API for drawing 2D plots such as lineplots, scatter plots, Taylor diagrams, data colored by scalar values, vector glyphs, isocontours and map projections. VCS is based on the VTK library. Vcs.js is the corresponding JavaScript API, designed to be as close as possible to the original VCS Python API and to provide similar functionality for the Web. Vcs.js includes additional functionality when compared with VCS. This additional API is used to introspect data files available on the server and variables available in a data file. Vcs.js can display plots in the browser window. It always works with a server that reads a data file, extracts variables from the file and subsets the data. From this point, two alternate paths are possible. First the system can render the data on the server using VCS producing an image which is send to the browser to be displayed. This path works for for all plot types and produces a reference image identical with the images produced by VCS. This path uses the VTK-Web library. As an optimization, usable in certain conditions, a second path is possible. Data is packed, and sent to the browser which uses a JavaScript plotting library, such as plotly, to display the data. Plots that work well in the browser are line-plots, scatter-plots for any data and many other plot types for small data and supported grid types. As web technology matures, more plots could be supported for rendering in the browser. Rendering can be done either on the client or on the server and we expect that the best place to render will change depending on the available web technology, data transfer costs, server management costs and value provided to users. We intend to provide a flexible solution that allows for both client and server side rendering and a meaningful way to choose between the two. We provide a web-based user interface called vCdat which uses Vcs.js as its visualization library. Our paper will discuss the principles guiding our design choices for Vcs.js, present our design in detail and show a sample usage of the library.

Changes in the character of DOC in streams during storms in two Midwestern watersheds with contrasting land uses

USGS Publications Warehouse

Vidon, P.; Wagner, L.E.; Soyeux, E.

2008-01-01

Dissolved organic carbon (DOC) dynamics in streams is important, yet few studies focus on DOC dynamics in Midwestern streams during storms. In this study, stream DOC dynamics during storms in two Midwestern watersheds with contrasting land uses, the change in character of stream DOC during storms, and the usability of DOC as a hydrologic tracer in artificially drained landscapes of the Midwest are investigated. Major cation/DOC concentrations, and DOC specific UV absorbance (SUVA) and fluorescence index (FI) were monitored at 2-4 h intervals during three spring storms. Although DOC is less aromatic in the mixed land use watershed than in the agricultural watershed, land use has little impact on stream DOC concentration during storms. For both watersheds, DOC concentration follows discharge, and SUVA and FI values indicate an increase in stream DOC aromaticity and lignin content during storms. The comparison of DOC/major cation flushing dynamics indicates that DOC is mainly exported via overland flow/macropore flow. In both watersheds, the increase in DOC concentration in the streams during storms corresponds to a shift in the source of DOC from DOC originating from mineral soil layers of the soil profile at baseflow, to DOC originating from surficial soil layers richer in aromatic substances and lignin during storms. Results also suggest that DOC, SUVA and FI could be used as hydrologic tracers in artificially drained landscapes of the Midwest. These results underscore the importance of sampling streams for DOC during high flow periods in order to understand the fate of DOC in streams. ?? 2008 Springer Science+Business Media B.V.

psRNATarget: a plant small RNA target analysis server

PubMed Central

Dai, Xinbin; Zhao, Patrick Xuechun

2011-01-01

Plant endogenous non-coding short small RNAs (20–24 nt), including microRNAs (miRNAs) and a subset of small interfering RNAs (ta-siRNAs), play important role in gene expression regulatory networks (GRNs). For example, many transcription factors and development-related genes have been reported as targets of these regulatory small RNAs. Although a number of miRNA target prediction algorithms and programs have been developed, most of them were designed for animal miRNAs which are significantly different from plant miRNAs in the target recognition process. These differences demand the development of separate plant miRNA (and ta-siRNA) target analysis tool(s). We present psRNATarget, a plant small RNA target analysis server, which features two important analysis functions: (i) reverse complementary matching between small RNA and target transcript using a proven scoring schema, and (ii) target-site accessibility evaluation by calculating unpaired energy (UPE) required to ‘open’ secondary structure around small RNA’s target site on mRNA. The psRNATarget incorporates recent discoveries in plant miRNA target recognition, e.g. it distinguishes translational and post-transcriptional inhibition, and it reports the number of small RNA/target site pairs that may affect small RNA binding activity to target transcript. The psRNATarget server is designed for high-throughput analysis of next-generation data with an efficient distributed computing back-end pipeline that runs on a Linux cluster. The server front-end integrates three simplified user-friendly interfaces to accept user-submitted or preloaded small RNAs and transcript sequences; and outputs a comprehensive list of small RNA/target pairs along with the online tools for batch downloading, key word searching and results sorting. The psRNATarget server is freely available at http://plantgrn.noble.org/psRNATarget/. PMID:21622958

The Scientific Uplink and User Support System for SIRTF

NASA Astrophysics Data System (ADS)

Heinrichsen, I.; Chavez, J.; Hartley, B.; Mei, Y.; Potts, S.; Roby, T.; Turek, G.; Valjavec, E.; Wu, X.

The Space Infrared Telescope Facility (SIRTF) is one of NASA's Great Observatory missions, scheduled for launch in 2001. As such its ground segment design is driven by the requirement to provide strong support for the entire astronomical community starting with the call for Legacy Proposals in early 2000. In this contribution, we present the astronomical user interface and the design of the server software that comprises the Scientific Uplink System for SIRTF. The software architecture is split into three major parts: A front-end Java application deployed to the astronomical community providing the capabilities to visualize and edit proposals and the associated lists of observations. This observer toolkit provides templates to define all parameters necessary to carry out the required observations. A specialized version of this software, based on the same overall architecture, is used internal to the SIRTF Science Center to prepare calibration and engineering observations. A Weblogic (TM) based middleware component brokers the transactions with the servers, astronomical image and catalog sources as well as the SIRTF operational databases. Several server systems perform the necessary computations, to obtain resource estimates, target visibilities and to access the instrument models for signal to noise calculations. The same server software is used internally at a later stage to derive the detailed command sequences needed by the SIRTF instruments and spacecraft to execute a given observation.

The Impact of Inherent Instructional Design in Online Courseware.

ERIC Educational Resources Information Center

Harvey, Douglas M.; Lee, Jung

2001-01-01

Examines how the use of server-based courseware development solutions affects the instructional design process when creating online distance education. Highlights include pedagogical, visual interface (e.g., visual metaphor and navigation layout), interaction, and instructional design implications of online courseware. (Contains 54 references.)…

ROMPS critical design review. Volume 2: Robot module design documentation

NASA Technical Reports Server (NTRS)

Dobbs, M. E.

1992-01-01

The robot module design documentation for the Remote Operated Materials Processing in Space (ROMPS) experiment is compiled. This volume presents the following information: robot module modifications; Easylab commands definitions and flowcharts; Easylab program definitions and flowcharts; robot module fault conditions and structure charts; and C-DOC flow structure and cross references.

PanMetaDocs - A tool for collecting and managing the long tail of "small science data"

NASA Astrophysics Data System (ADS)

Klump, J.; Ulbricht, D.

2011-12-01

In the early days of thinking about cyberinfrastructure the focus was on "big science data". Today, the challenge is not anymore to store several terabytes of data, but to manage data objects in a way that facilitates their re-use. Key to re-use by a user as a data consumer is proper documentation of the data. Also, data consumers need discovery metadata to find the data they need and they need descriptive metadata to be able to use the data they retrieved. Thus, data documentation faces the challenge to extensively and completely describe these objects, hold the items easily accessible at a sustainable cost level. However, data curation and documentation do not rank high in the everyday work of a scientist as a data producer. Data producers are often frustrated by being asked to provide metadata on their data over and over again, information that seemed very obvious from the context of their work. A challenge to data archives is the wide variety of metadata schemata in use, which creates a number of maintenance and design challenges of its own. PanMetaDocs addresses these issues by allowing an uploaded files to be described by more than one metadata object. PanMetaDocs, which was developed from PanMetaWorks, is a PHP based web application that allow to describe data with any xml-based metadata schema. Its user interface is browser based and was developed to collect metadata and data in collaborative scientific projects situated at one or more institutions. The metadata fields can be filled with static or dynamic content to reduce the number of fields that require manual entries to a minimum and make use of contextual information in a project setting. In the development of PanMetaDocs the business logic of panMetaWorks is reused, except for the authentication and data management functions of PanMetaWorks, which are delegated to the eSciDoc framework. The eSciDoc repository framework is designed as a service oriented architecture that can be controlled through a REST interface to create version controlled items with metadata records in XML format. PanMetaDocs utilizes the eSciDoc items model to add multiple metadata records that describe uploaded files in different metadata schemata. While datasets are collected and described, shared to collaborate with other scientists and finally published, data objects are transferred from a shared data curation domain into a persistent data curation domain. Through an RSS interface for recent datasets PanMetaWorks allows project members to be informed about data uploaded by other project members. The implementation of the OAI-PMH interface can be used to syndicate data catalogs to research data portals, such as the panFMP data portal framework. Once data objects are uploaded to the eSciDoc infrastructure it is possible to drop the software instance that was used for collecting the data, while the compiled data and metadata are accessible for other authorized applications through the institution's eSciDoc middleware. This approach of "expendable data curation tools" allows for a significant reduction in costs for software maintenance as expensive data capture applications do not need to be maintained indefinitely to ensure long term access to the stored data.

Prototyping a 10 Gigabit-Ethernet Event-Builder for the CTA Camera Server

NASA Astrophysics Data System (ADS)

Hoffmann, Dirk; Houles, Julien

2012-12-01

While the Cherenkov Telescope Array will end its Preperatory Phase in 2012 or 2013 with the publication of a Technical Design Report, our lab has undertaken within the french CTA community the design and prototyping of a Camera-Server, which is a PC architecture based computer, used as a switchboard assigned to each of a hundred telescopes to handle a maximum amount of scientific data recorded by each telescope. Our work aims for a data acquisition hardware and software system for the scientific raw data at optimal speed. We have evaluated the maximum performance that can be obtained by choosing standard (COTS) hardware and software (Linux) in conjunction with a 10 Gb/s switch.

76 FR 68439 - Meeting of the Small Communities Advisory Subcommittee

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-04

... Building, 1201 Constitution Avenue NW., Washington, DC. Topics to be discussed are issues and... submitted electronically to [email protected] or contact Frances Eargle the Designated Federal Officer... 20, 2011. M. Frances Eargle, Designated Federal Officer, Local Government Advisory Committee. [FR Doc...

75 FR 2920 - Designations of Foreign Terrorist Organizations; In the Matter of the Designation of: al-Qa'ida...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-01-19

... INA. This determination shall be published in the Federal Register. December 14, 2009. Hillary Rodham Clinton, Secretary of State, Department of State. [FR Doc. 2010-880 Filed 1-15-10; 8:45 am] BILLING CODE...

Constraining the sources and cycling of dissolved organic carbon in a large oligotrophic lake using radiocarbon analyses

NASA Astrophysics Data System (ADS)

Zigah, Prosper K.; Minor, Elizabeth C.; McNichol, Ann P.; Xu, Li; Werne, Josef P.

2017-07-01

We measured the concentrations and isotopic compositions of solid phase extracted (SPE) dissolved organic carbon (DOC) and high molecular weight (HMW) DOC and their constituent organic components in order to better constrain the sources and cycling of DOC in a large oligotrophic lacustrine system (Lake Superior, North America). SPE DOC constituted a significant proportion (41-71%) of the lake DOC relative to HMW DOC (10-13%). Substantial contribution of 14C-depleted components to both SPE DOC (Δ14C = 25-43‰) and HMW DOC (Δ14C = 22-32‰) was evident during spring mixing, and depressed their radiocarbon values relative to the lake dissolved inorganic carbon (DIC; Δ14C ∼ 59‰). There was preferential removal of 14C-depleted (older) and thermally recalcitrant components from HMW DOC and SPE DOC in the summer. Contemporary photoautotrophic addition to HMW DOC was observed during summer stratification in contrast to SPE DOC, which decreased in concentration during stratification. Serial thermal oxidation radiocarbon analysis revealed a diversity of sources (both contemporary and older) within the SPE DOC, and also showed distinct components within the HMW DOC. The thermally labile components of HMW DOC were 14C-enriched and are attributed to heteropolysaccharides (HPS), peptides/amide and amino sugars (AMS) relative to the thermally recalcitrant components reflecting the presence of older material, perhaps carboxylic-rich alicyclic molecules (CRAM). The solvent extractable lipid-like fraction of HMW DOC was very 14C-depleted (as old as 1270-2320 14C years) relative to the carbohydrate-like and protein-like substances isolated by acid hydrolysis of HMW DOC. Our data constrain relative influences of contemporary DOC and old DOC, and DOC cycling in a modern freshwater ecosystem.

Technology insertion of a COTS RAID server as an image buffer in the image chain of the Defense Mapping Agency's Digital Production System

NASA Astrophysics Data System (ADS)

Mehring, James W.; Thomas, Scott D.

1995-11-01

The Data Services Segment of the Defense Mapping Agency's Digital Production System provides a digital archive of imagery source data for use by DMA's cartographic user's. This system was developed in the mid-1980's and is currently undergoing modernization. This paper addresses the modernization of the imagery buffer function that was performed by custom hardware in the baseline system and is being replaced by a RAID Server based on commercial off the shelf (COTS) hardware. The paper briefly describes the baseline DMA image system and the modernization program, that is currently under way. Throughput benchmark measurements were made to make design configuration decisions for a commercial off the shelf (COTS) RAID Server to perform as system image buffer. The test program began with performance measurements of the RAID read and write operations between the RAID arrays and the server CPU for RAID levels 0, 5 and 0+1. Interface throughput measurements were made for the HiPPI interface between the RAID Server and the image archive and processing system as well as the client side interface between a custom interface board that provides the interface between the internal bus of the RAID Server and the Input- Output Processor (IOP) external wideband network currently in place in the DMA system to service client workstations. End to end measurements were taken from the HiPPI interface through the RAID write and read operations to the IOP output interface.

Towards the Goal of Modular Climate Data Services: An Overview of NCPP Applications and Software

NASA Astrophysics Data System (ADS)

Koziol, B. W.; Cinquini, L.; Treshansky, A.; Murphy, S.; DeLuca, C.

2013-12-01

In August 2013, the National Climate Predictions and Projections Platform (NCPP) organized a workshop focusing on the quantitative evaluation of downscaled climate data products (QED-2013). The QED-2013 workshop focused on real-world application problems drawn from several sectors (e.g. hydrology, ecology, environmental health, agriculture), and required that downscaled downscaled data products be dynamically accessed, generated, manipulated, annotated, and evaluated. The cyberinfrastructure elements that were integrated to support the workshop included (1) a wiki-based project hosting environment (Earth System CoG) with an interface to data services provided by an Earth System Grid Federation (ESGF) data node; (2) metadata tools provided by the Earth System Documentation (ES-DOC) collaboration; and (3) a Python-based library OpenClimateGIS (OCGIS) for subsetting and converting NetCDF-based climate data to GIS and tabular formats. Collectively, this toolset represents a first deployment of a 'ClimateTranslator' that enables users to access, interpret, and apply climate information at local and regional scales. This presentation will provide an overview of these components above, how they were used in the workshop, and discussion of current and potential integration. The long-term strategy for this software stack is to offer the suite of services described on a customizable, per-project basis. Additional detail on the three components is below. (1) Earth System CoG is a web-based collaboration environment that integrates data discovery and access services with tools for supporting governance and the organization of information. QED-2013 utilized these capabilities to share with workshop participants a suite of downscaled datasets, associated images derived from those datasets, and metadata files describing the downscaling techniques involved. The collaboration side of CoG was used for workshop organization, discussion, and results. (2) The ES-DOC Questionnaire, Viewer, and Comparator are web-based tools for the creation and use of model and experiment documentation. Workshop participants used the Questionnaire to generate metadata on regional downscaling models and statistical downscaling methods, and the Viewer to display the results. A prototype Comparator was available to compare properties across dynamically downscaled models. (3) OCGIS is a Python (v2.7) package designed for geospatial manipulation, subsetting, computation, and translation of Climate and Forecasting (CF)-compliant climate datasets - either stored in local NetCDF files, or files served through THREDDS data servers.

Managing Attribute—Value Clinical Trials Data Using the ACT/DB Client—Server Database System

PubMed Central

Nadkarni, Prakash M.; Brandt, Cynthia; Frawley, Sandra; Sayward, Frederick G.; Einbinder, Robin; Zelterman, Daniel; Schacter, Lee; Miller, Perry L.

1998-01-01

ACT/DB is a client—server database application for storing clinical trials and outcomes data, which is currently undergoing initial pilot use. It stores most of its data in entity—attribute—value form. Such data are segregated according to data type to allow indexing by value when possible, and binary large object data are managed in the same way as other data. ACT/DB lets an investigator design a study rapidly by defining the parameters (or attributes) that are to be gathered, as well as their logical grouping for purposes of display and data entry. ACT/DB generates customizable data entry. The data can be viewed through several standard reports as well as exported as text to external analysis programs. ACT/DB is designed to encourage reuse of parameters across multiple studies and has facilities for dictionary search and maintenance. It uses a Microsoft Access client running on Windows 95 machines, which communicates with an Oracle server running on a UNIX platform. ACT/DB is being used to manage the data for seven studies in its initial deployment. PMID:9524347

Reusing Migration to Simply and Efficiently Implement Multi-Server Operations in Transparently Scalable Storage Systems

DTIC Science & Technology

2010-05-01

support multi-server operations, demonstrating the feasibility of the approach. Fourth, it evaluates the prototype to show that performance is reasonable ...architects make many such trade- offs in the course of designing a system. If the architect’s goal is the best possible performance at any cost, then...needs to be transferred, and the unit is reasonably sized (a directory or a small number of directories), the transfer latency can also be small

Experiences with DCE: the pro7 communication server based on OSF-DCE functionality.

PubMed

Schulte, M; Lordieck, W

1997-01-01

The pro7-communication server is a new approach to manage communication between different applications on different hardware platforms in a hospital environment. The most important features are the use of OSF/DCE for realising remote procedure calls between different platforms, the use of an SQL-92 compatible relational database and the design of a new software development tool (called protocol definition language compiler) for describing the interface of a new application, which is to integrate in a hospital environment.

Government Information Locator Service (GILS). Draft report to the Information Infrastructure Task Force

NASA Technical Reports Server (NTRS)

1994-01-01

This is a draft report on the Government Information Locator Service (GILS) to the National Information Infrastructure (NII) task force. GILS is designed to take advantage of internetworking technology known as client-server architecture which allows information to be distributed among multiple independent information servers. Two appendices are provided -- (1) A glossary of related terminology and (2) extracts from a draft GILS profile for the use of the American National Standard Information Retrieval Application Service Definition and Protocol Specification for Library Applications.

An application of queueing theory to the design of channel requirements for special purpose communications satellites. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Hein, G. F.

1974-01-01

Special purpose satellites are very cost sensitive to the number of broadcast channels, usually will have Poisson arrivals, fairly low utilization (less than 35%), and a very high availability requirement. To solve the problem of determining the effects of limiting C the number of channels, the Poisson arrival, infinite server queueing model will be modified to describe the many server case. The model is predicated on the reproductive property of the Poisson distribution.

Phase 1 IWAR Test Results

DTIC Science & Technology

2010-01-01

Symantec Server Antivirus 1 1 1 1 2 7 8 8 Service Passwords 0 10 4 4 4 10 5 5 Banner Needs 0 0 0 0 0 0 0 0 Unauthorized Software 0 1 0 1 4 1 4 1... software needed to manage and operate systems in the testing rooms. Systems in the testing rooms were made to resemble shipboard Navy systems as closely...i.e., work- station and server software , routing and switching, operating systems, and so forth). This training was also designed to provide

General Framework for Animal Food Safety Traceability Using GS1 and RFID

NASA Astrophysics Data System (ADS)

Cao, Weizhu; Zheng, Limin; Zhu, Hong; Wu, Ping

GS1 is global traceability standard, which is composed by the encoding system (EAN/UCC, EPC), the data carriers identified automatically (bar codes, RFID), electronic data interchange standards (EDI, XML). RFID is a non-contact, multi-objective automatic identification technique. Tracing of source food, standardization of RFID tags, sharing of dynamic data are problems to solve urgently for recent traceability systems. The paper designed general framework for animal food safety traceability using GS1 and RFID. This framework uses RFID tags encoding with EPCglobal tag data standards. Each information server has access tier, business tier and resource tier. These servers are heterogeneous and distributed, providing user access interfaces by SOAP or HTTP protocols. For sharing dynamic data, discovery service and object name service are used to locate dynamic distributed information servers.

Multimedia data repository for the World Wide Web

NASA Astrophysics Data System (ADS)

Chen, Ken; Lu, Dajin; Xu, Duanyi

1998-08-01

This paper introduces the design and implementation of a Multimedia Data Repository served as a multimedia information system, which provides users a Web accessible, platform independent interface to query, browse, and retrieve multimedia data such as images, graphics, audio, video from a large multimedia data repository. By integrating the multimedia DBMS, in which the textual information and samples of the multimedia data is organized and stored, and Web server together into the Microsoft ActiveX Server Framework, users can access the DBMS and query the information by simply using a Web browser at the client-side. The original multimedia data can then be located and transmitted through the Internet from the tertiary storage device, a 400 CDROM optical jukebox at the server-side, to the client-side for further use.

AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures

PubMed Central

Zambrano, Rafael; Jamroz, Michal; Szczasiuk, Agata; Pujols, Jordi; Kmiecik, Sebastian; Ventura, Salvador

2015-01-01

Protein aggregation underlies an increasing number of disorders and constitutes a major bottleneck in the development of therapeutic proteins. Our present understanding on the molecular determinants of protein aggregation has crystalized in a series of predictive algorithms to identify aggregation-prone sites. A majority of these methods rely only on sequence. Therefore, they find difficulties to predict the aggregation properties of folded globular proteins, where aggregation-prone sites are often not contiguous in sequence or buried inside the native structure. The AGGRESCAN3D (A3D) server overcomes these limitations by taking into account the protein structure and the experimental aggregation propensity scale from the well-established AGGRESCAN method. Using the A3D server, the identified aggregation-prone residues can be virtually mutated to design variants with increased solubility, or to test the impact of pathogenic mutations. Additionally, A3D server enables to take into account the dynamic fluctuations of protein structure in solution, which may influence aggregation propensity. This is possible in A3D Dynamic Mode that exploits the CABS-flex approach for the fast simulations of flexibility of globular proteins. The A3D server can be accessed at http://biocomp.chem.uw.edu.pl/A3D/. PMID:25883144

75 FR 13145 - SOUTH DAKOTA Disaster #SD-00027

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-18

... PINE RIDGE RESERVATION and ROSEBUD RESERVATION that lie within the designated counties. The Interest... and 59008) Roger B. Garland, Acting Associate Administrator for Disaster Assistance. [FR Doc. 2010...

[Design of an anesthesia and micro-environment information management system in mobile operating room].

PubMed

Wang, Xianwen; Liu, Zhiguo; Zhang, Wenchang; Wu, Qingfu; Tan, Shulin

2013-08-01

We have designed a mobile operating room information management system. The system is composed of a client and a server. A client, consisting of a PC, medical equipments, PLC and sensors, provides the acquisition and processing of anesthesia and micro-environment data. A server is a powerful computer that stores the data of the system. The client gathers the medical device data by using the C/S mode, and analyzes the obtained HL7 messages through the class library call. The client collects the micro-environment information with PLC, and finishes the data reading with the OPC technology. Experiment results showed that the designed system could manage the patient anesthesia and micro-environment information well, and improve the efficiency of the doctors' works and the digital level of the mobile operating room.

Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly.

PubMed

Genee, Hans Jasper; Bonde, Mads Tvillinggaard; Bagger, Frederik Otzen; Jespersen, Jakob Berg; Sommer, Morten O A; Wernersson, Rasmus; Olsen, Lars Rønn

2015-03-20

USER cloning is a fast and versatile method for engineering of plasmid DNA. We have developed a user friendly Web server tool that automates the design of optimal PCR primers for several distinct USER cloning-based applications. Our Web server, named AMUSER (Automated DNA Modifications with USER cloning), facilitates DNA assembly and introduction of virtually any type of site-directed mutagenesis by designing optimal PCR primers for the desired genetic changes. To demonstrate the utility, we designed primers for a simultaneous two-position site-directed mutagenesis of green fluorescent protein (GFP) to yellow fluorescent protein (YFP), which in a single step reaction resulted in a 94% cloning efficiency. AMUSER also supports degenerate nucleotide primers, single insert combinatorial assembly, and flexible parameters for PCR amplification. AMUSER is freely available online at http://www.cbs.dtu.dk/services/AMUSER/.

The designing and implementation of PE teaching information resource database based on broadband network

NASA Astrophysics Data System (ADS)

Wang, Jian

2017-01-01

In order to change traditional PE teaching mode and realize the interconnection, interworking and sharing of PE teaching resources, a distance PE teaching platform based on broadband network is designed and PE teaching information resource database is set up. The designing of PE teaching information resource database takes Windows NT 4/2000Server as operating system platform, Microsoft SQL Server 7.0 as RDBMS, and takes NAS technology for data storage and flow technology for video service. The analysis of system designing and implementation shows that the dynamic PE teaching information resource sharing platform based on Web Service can realize loose coupling collaboration, realize dynamic integration and active integration and has good integration, openness and encapsulation. The distance PE teaching platform based on Web Service and the design scheme of PE teaching information resource database can effectively solve and realize the interconnection, interworking and sharing of PE teaching resources and adapt to the informatization development demands of PE teaching.

How appetizing is the dissolved organic matter (DOM) trees lose during rainfall?

NASA Astrophysics Data System (ADS)

Howard, D.; Van Stan, J. T., II; Whitetree, A.; Zhu, L.; Stubbins, A.

2017-12-01

Dissolved organic carbon (DOC) is the chemical backbone of dissolved organic matter (DOM), which is important because it drives many processes in soils and waterways. Current DOC work has paid little attention to interactions between rain and plant canopies, where rainfall is partitioned into throughfall and stemflow. Even less DOC research has investigated the effect of arboreal epiphytes on throughfall and stemflow DOC. The purpose of this study is twofold: (1) assess the degree and timing of DOC consumption by microbial communities (biolability) in throughfall and stemflow, and (2) determine whether the presence of arboreal epiphytes in the canopy affect DOC biolability. Biolability of stemflow and throughfall DOC from Juniperus virginiana (cedar) was determined by incubating samples for 14 days. Throughfall and stemflow DOC was highly biolabile with DOC concentrations decreasing by 30-60%. Throughfall DOC was more biolabile than stemflow DOC. DOC in both throughfall and stemflow from epiphyte-covered cedars was less biolabile than DOC from trees without epiphytes. The high biolability of tree-derived DOC indicates that its supply provides carbon substrates to the microbial community at the forest floor, in soils and the rhizosphere. Epiphytes appear to be important in determining the biolability of DOC and therefore the size of this carbon subsidy to the soil ecosystem.

Risk Assessment of the Naval Postgraduate School Gigabit Network

DTIC Science & Technology

2004-09-01

Management Server (1) • Ras Server (1) • Remedy Server (1) • Samba Server(2) • SQL Servers (3) • Web Servers (3) • WINS Server (1) • Library...Server Bob Sharp INCA Windows 2000 Advanced Server NPGS Landesk SQL 2000 Alan Pires eagle Microsoft Windows 2000 Advanced Server EWS NPGS Landesk...Advanced Server Special Projects NPGS SQL Alan Pires MC01BDB Microsoft Windows 2000 Advanced Server Special Projects NPGS SQL 2000 Alan Pires

"One-Stop Shopping" for Ocean Remote-Sensing and Model Data

NASA Technical Reports Server (NTRS)

Li, P. Peggy; Vu, Quoc; Chao, Yi; Li, Zhi-Jin; Choi, Jei-Kook

2006-01-01

OurOcean Portal 2.0 (http:// ourocean.jpl.nasa.gov) is a software system designed to enable users to easily gain access to ocean observation data, both remote-sensing and in-situ, configure and run an Ocean Model with observation data assimilated on a remote computer, and visualize both the observation data and the model outputs. At present, the observation data and models focus on the California coastal regions and Prince William Sound in Alaska. This system can be used to perform both real-time and retrospective analyses of remote-sensing data and model outputs. OurOcean Portal 2.0 incorporates state-of-the-art information technologies (IT) such as MySQL database, Java Web Server (Apache/Tomcat), Live Access Server (LAS), interactive graphics with Java Applet at the Client site and MatLab/GMT at the server site, and distributed computing. OurOcean currently serves over 20 real-time or historical ocean data products. The data are served in pre-generated plots or their native data format. For some of the datasets, users can choose different plotting parameters and produce customized graphics. OurOcean also serves 3D Ocean Model outputs generated by ROMS (Regional Ocean Model System) using LAS. The Live Access Server (LAS) software, developed by the Pacific Marine Environmental Laboratory (PMEL) of the National Oceanic and Atmospheric Administration (NOAA), is a configurable Web-server program designed to provide flexible access to geo-referenced scientific data. The model output can be views as plots in horizontal slices, depth profiles or time sequences, or can be downloaded as raw data in different data formats, such as NetCDF, ASCII, Binary, etc. The interactive visualization is provided by graphic software, Ferret, also developed by PMEL. In addition, OurOcean allows users with minimal computing resources to configure and run an Ocean Model with data assimilation on a remote computer. Users may select the forcing input, the data to be assimilated, the simulation period, and the output variables and submit the model to run on a backend parallel computer. When the run is complete, the output will be added to the LAS server for

RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.

PubMed

Li, Ying; Shi, Xiaohu; Liang, Yanchun; Xie, Juan; Zhang, Yu; Ma, Qin

2017-01-21

RNAs have been found to carry diverse functionalities in nature. Inferring the similarity between two given RNAs is a fundamental step to understand and interpret their functional relationship. The majority of functional RNAs show conserved secondary structures, rather than sequence conservation. Those algorithms relying on sequence-based features usually have limitations in their prediction performance. Hence, integrating RNA structure features is very critical for RNA analysis. Existing algorithms mainly fall into two categories: alignment-based and alignment-free. The alignment-free algorithms of RNA comparison usually have lower time complexity than alignment-based algorithms. An alignment-free RNA comparison algorithm was proposed, in which novel numerical representations RNA-TVcurve (triple vector curve representation) of RNA sequence and corresponding secondary structure features are provided. Then a multi-scale similarity score of two given RNAs was designed based on wavelet decomposition of their numerical representation. In support of RNA mutation and phylogenetic analysis, a web server (RNA-TVcurve) was designed based on this alignment-free RNA comparison algorithm. It provides three functional modules: 1) visualization of numerical representation of RNA secondary structure; 2) detection of single-point mutation based on secondary structure; and 3) comparison of pairwise and multiple RNA secondary structures. The inputs of the web server require RNA primary sequences, while corresponding secondary structures are optional. For the primary sequences alone, the web server can compute the secondary structures using free energy minimization algorithm in terms of RNAfold tool from Vienna RNA package. RNA-TVcurve is the first integrated web server, based on an alignment-free method, to deliver a suite of RNA analysis functions, including visualization, mutation analysis and multiple RNAs structure comparison. The comparison results with two popular RNA comparison tools, RNApdist and RNAdistance, showcased that RNA-TVcurve can efficiently capture subtle relationships among RNAs for mutation detection and non-coding RNA classification. All the relevant results were shown in an intuitive graphical manner, and can be freely downloaded from this server. RNA-TVcurve, along with test examples and detailed documents, are available at: http://ml.jlu.edu.cn/tvcurve/ .

Rewarding and reinforcing effects of 4-chloro-2,5-dimethoxyamphetamine and AH-7921 in rodents.

PubMed

Cha, Hye Jin; Jeon, Seo Young; Jang, Hwa Jin; Shin, Jisoon; Kim, Young-Hoon; Suh, Soo Kyung

2018-05-29

New psychoactive substances (NPSs), i.e., newly designed substances with chemical residues that are slightly different from those of known psychoactive substances, have been emerging since the late 2000s, and social problems related to the use of these substances are increasing globally. Two such NPSs are 4-chloro-2,5-dimethoxyamphetamine (DOC), a psychedelic substance that is structurally related to amphetamine, and AH-7921, an opioid analgesic that is used for recreational purposes and has a potency similar to that of morphine. Currently, scientific evidence for the dependence liability or toxicity of NPSs is lacking. Therefore, in this study, we performed animal behavioral tests to evaluate the dependence liability of DOC and AH-7921. The rewarding and reinforcing effects of DOC and AH-7921 were evaluated using the conditioned place preference (CPP) paradigm in mice and the self-administration (SA) procedure in rats. Both DOC and AH-7921 increased the preference for the drug-paired compartment in the CPP test at a dose of 0.3 mg/kg and increased the number of responses to the active lever in the SA test at 0.01 mg/(kg·infusion). Collectively, the data suggest that DOC and AH-7921 may have both rewarding and reinforcing effects. Further studies are needed to confirm the reinforcing effects in broader dose ranges with various schedules. Copyright © 2018 Elsevier B.V. All rights reserved.

Embedded controller for GEM detector readout system

NASA Astrophysics Data System (ADS)

Zabołotny, Wojciech M.; Byszuk, Adrian; Chernyshova, Maryna; Cieszewski, Radosław; Czarski, Tomasz; Dominik, Wojciech; Jakubowska, Katarzyna L.; Kasprowicz, Grzegorz; Poźniak, Krzysztof; Rzadkiewicz, Jacek; Scholz, Marek

2013-10-01

This paper describes the embedded controller used for the multichannel readout system for the GEM detector. The controller is based on the embedded Mini ITX mainboard, running the GNU/Linux operating system. The controller offers two interfaces to communicate with the FPGA based readout system. FPGA configuration and diagnostics is controlled via low speed USB based interface, while high-speed setup of the readout parameters and reception of the measured data is handled by the PCI Express (PCIe) interface. Hardware access is synchronized by the dedicated server written in C. Multiple clients may connect to this server via TCP/IP network, and different priority is assigned to individual clients. Specialized protocols have been implemented both for low level access on register level and for high level access with transfer of structured data with "msgpack" protocol. High level functionalities have been split between multiple TCP/IP servers for parallel operation. Status of the system may be checked, and basic maintenance may be performed via web interface, while the expert access is possible via SSH server. System was designed with reliability and flexibility in mind.

Pathview Web: user friendly pathway visualization and data integration.

PubMed

Luo, Weijun; Pant, Gaurav; Bhavnasi, Yeshvant K; Blanchard, Steven G; Brouwer, Cory

2017-07-03

Pathway analysis is widely used in omics studies. Pathway-based data integration and visualization is a critical component of the analysis. To address this need, we recently developed a novel R package called Pathview. Pathview maps, integrates and renders a large variety of biological data onto molecular pathway graphs. Here we developed the Pathview Web server, as to make pathway visualization and data integration accessible to all scientists, including those without the special computing skills or resources. Pathview Web features an intuitive graphical web interface and a user centered design. The server not only expands the core functions of Pathview, but also provides many useful features not available in the offline R package. Importantly, the server presents a comprehensive workflow for both regular and integrated pathway analysis of multiple omics data. In addition, the server also provides a RESTful API for programmatic access and conveniently integration in third-party software or workflows. Pathview Web is openly and freely accessible at https://pathview.uncc.edu/. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

On delay adjustment for dynamic load balancing in distributed virtual environments.

PubMed

Deng, Yunhua; Lau, Rynson W H

2012-04-01

Distributed virtual environments (DVEs) are becoming very popular in recent years, due to the rapid growing of applications, such as massive multiplayer online games (MMOGs). As the number of concurrent users increases, scalability becomes one of the major challenges in designing an interactive DVE system. One solution to address this scalability problem is to adopt a multi-server architecture. While some methods focus on the quality of partitioning the load among the servers, others focus on the efficiency of the partitioning process itself. However, all these methods neglect the effect of network delay among the servers on the accuracy of the load balancing solutions. As we show in this paper, the change in the load of the servers due to network delay would affect the performance of the load balancing algorithm. In this work, we conduct a formal analysis of this problem and discuss two efficient delay adjustment schemes to address the problem. Our experimental results show that our proposed schemes can significantly improve the performance of the load balancing algorithm with neglectable computation overhead.

The National Institutes of Health Clinical Center Digital Imaging Network, Picture Archival and Communication System, and Radiology Information System.

PubMed

Goldszal, A F; Brown, G K; McDonald, H J; Vucich, J J; Staab, E V

2001-06-01

In this work, we describe the digital imaging network (DIN), picture archival and communication system (PACS), and radiology information system (RIS) currently being implemented at the Clinical Center, National Institutes of Health (NIH). These systems are presently in clinical operation. The DIN is a redundant meshed network designed to address gigabit density and expected high bandwidth requirements for image transfer and server aggregation. The PACS projected workload is 5.0 TB of new imaging data per year. Its architecture consists of a central, high-throughput Digital Imaging and Communications in Medicine (DICOM) data repository and distributed redundant array of inexpensive disks (RAID) servers employing fiber-channel technology for immediate delivery of imaging data. On demand distribution of images and reports to clinicians and researchers is accomplished via a clustered web server. The RIS follows a client-server model and provides tools to order exams, schedule resources, retrieve and review results, and generate management reports. The RIS-hospital information system (HIS) interfaces include admissions, discharges, and transfers (ATDs)/demographics, orders, appointment notifications, doctors update, and results.

Model of load balancing using reliable algorithm with multi-agent system

NASA Astrophysics Data System (ADS)

Afriansyah, M. F.; Somantri, M.; Riyadi, M. A.

2017-04-01

Massive technology development is linear with the growth of internet users which increase network traffic activity. It also increases load of the system. The usage of reliable algorithm and mobile agent in distributed load balancing is a viable solution to handle the load issue on a large-scale system. Mobile agent works to collect resource information and can migrate according to given task. We propose reliable load balancing algorithm using least time first byte (LFB) combined with information from the mobile agent. In system overview, the methodology consisted of defining identification system, specification requirements, network topology and design system infrastructure. The simulation method for simulated system was using 1800 request for 10 s from the user to the server and taking the data for analysis. Software simulation was based on Apache Jmeter by observing response time and reliability of each server and then compared it with existing method. Results of performed simulation show that the LFB method with mobile agent can perform load balancing with efficient systems to all backend server without bottleneck, low risk of server overload, and reliable.

Internet Distribution of Spacecraft Telemetry Data

NASA Technical Reports Server (NTRS)

Specht, Ted; Noble, David

2006-01-01

Remote Access Multi-mission Processing and Analysis Ground Environment (RAMPAGE) is a Java-language server computer program that enables near-real-time display of spacecraft telemetry data on any authorized client computer that has access to the Internet and is equipped with Web-browser software. In addition to providing a variety of displays of the latest available telemetry data, RAMPAGE can deliver notification of an alarm by electronic mail. Subscribers can then use RAMPAGE displays to determine the state of the spacecraft and formulate a response to the alarm, if necessary. A user can query spacecraft mission data in either binary or comma-separated-value format by use of a Web form or a Practical Extraction and Reporting Language (PERL) script to automate the query process. RAMPAGE runs on Linux and Solaris server computers in the Ground Data System (GDS) of NASA's Jet Propulsion Laboratory and includes components designed specifically to make it compatible with legacy GDS software. The client/server architecture of RAMPAGE and the use of the Java programming language make it possible to utilize a variety of competitive server and client computers, thereby also helping to minimize costs.

Diagnosis of Processes Controlling Dissolved Organic Carbon (DOC) Export in a Subarctic Region by a Dynamic Ecosystem Model

NASA Astrophysics Data System (ADS)

Tang, J.

2015-12-01

Permafrost thawing in high latitudes allows more soil organic carbon (SOC) to become hydrologically accessible. This can increase dissolved organic carbon (DOC) exports and carbon release to the atmosphere as CO2 and CH4, with a positive feedback to regional and global climate warming. However, this portion of carbon loss through DOC export is often neglected in ecosystem models. In this paper, we incorporate a set of DOC-related processes (DOC production, mineralization, diffusion, sorption-desorption and leaching) into an Arctic-enabled version of the dynamic ecosystem model LPJ-GUESS (LPJ-GUESS WHyMe) to mechanistically model the DOC export, and to link this flux to other ecosystem processes. The extended LPJ-GUESS WHyMe with these DOC processes is applied to the Stordalen catchment in northern Sweden. The relative importance of different DOC-related processes for mineral and peatland soils for this region have been explored at both monthly and annual scales based on a detailed variance-based Sobol sensitivity analysis. For mineral soils, the annual DOC export is dominated by DOC fluxes in snowmelt seasons and the peak in spring is related to the runoff passing through top organic rich layers. Two processes, DOC sorption-desorption and production, are found to contribute most to the annual variance in DOC export. For peatland soils, the DOC export during snowmelt seasons is constrained by frozen soils and the processes of DOC production and mineralization, determining the magnitudes of DOC desorption in snowmelt seasons as well as DOC sorption in the rest of months, play the most important role in annual variances of DOC export. Generally, the seasonality of DOC fluxes is closely correlated with runoff seasonality in this region. The current implementation has demonstrated that DOC-related processes in the framework of LPJ-GUESS WHyMe are at an appropriate level of complexity to represent the main mechanism of DOC dynamics in soils. The quantified contributions from different processes on DOC export dynamics could be further linked to the climate change, vegetation composition change and permafrost thawing in this region.

Access Control of Web- and Java-Based Applications

NASA Technical Reports Server (NTRS)

Tso, Kam S.; Pajevski, Michael J.

2013-01-01

Cybersecurity has become a great concern as threats of service interruption, unauthorized access, stealing and altering of information, and spreading of viruses have become more prevalent and serious. Application layer access control of applications is a critical component in the overall security solution that also includes encryption, firewalls, virtual private networks, antivirus, and intrusion detection. An access control solution, based on an open-source access manager augmented with custom software components, was developed to provide protection to both Web-based and Javabased client and server applications. The DISA Security Service (DISA-SS) provides common access control capabilities for AMMOS software applications through a set of application programming interfaces (APIs) and network- accessible security services for authentication, single sign-on, authorization checking, and authorization policy management. The OpenAM access management technology designed for Web applications can be extended to meet the needs of Java thick clients and stand alone servers that are commonly used in the JPL AMMOS environment. The DISA-SS reusable components have greatly reduced the effort for each AMMOS subsystem to develop its own access control strategy. The novelty of this work is that it leverages an open-source access management product that was designed for Webbased applications to provide access control for Java thick clients and Java standalone servers. Thick clients and standalone servers are still commonly used in businesses and government, especially for applications that require rich graphical user interfaces and high-performance visualization that cannot be met by thin clients running on Web browsers

77 FR 59629 - Statutorily Mandated Designation of Difficult Development Areas for 2013

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-28

... Economist, Economic Development and Public Finance Division, Office of Policy Development and Research... evaluative list of metropolitan zip codes that would be designated Small Area DDAs using this methodology and... Research. [FR Doc. 2012-23900 Filed 9-27-12; 8:45 am] BILLING CODE 4210-67-P ...

75 FR 34657 - Energy Efficiency and Sustainable Design Standards for New Federal Buildings

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-18

... Efficiency and Sustainable Design Standards for New Federal Buildings AGENCY: Office of Energy Efficiency and....S. Department of Energy, Office of Energy Efficiency and Renewable Energy, Federal Energy Management... June 11, 2010. Cathy Zoi, Assistant Secretary, Energy Efficiency and Renewable Energy. [FR Doc. 2010...

Dissolved organic carbon in Alaskan boreal forest: Sources, chemical characteristics, and biodegradability

USGS Publications Warehouse

Wickland, K.P.; Neff, J.C.; Aiken, G.R.

2007-01-01

The fate of terrestrially-derived dissolved organic carbon (DOC) is important to carbon (C) cycling in both terrestrial and aquatic environments, and recent evidence suggests that climate warming is influencing DOC dynamics in northern ecosystems. To understand what determines the fate of terrestrial DOC, it is essential to quantify the chemical nature and potential biodegradability of this DOC. We examined DOC chemical characteristics and biodegradability collected from soil pore waters and dominant vegetation species in four boreal black spruce forest sites in Alaska spanning a range of hydrologic regimes and permafrost extents (Well Drained, Moderately Well Drained, Poorly Drained, and Thermokarst Wetlands). DOC chemistry was characterized using fractionation, UV-Vis absorbance, and fluorescence measurements. Potential biodegradability was assessed by incubating the samples and measuring CO2 production over 1 month. Soil pore water DOC from all sites was dominated by hydrophobic acids and was highly aromatic, whereas the chemical composition of vegetation leachate DOC varied significantly with species. There was no seasonal variability in soil pore water DOC chemical characteristics or biodegradability; however, DOC collected from the Poorly Drained site was significantly less biodegradable than DOC from the other three sites (6% loss vs. 13-15% loss). The biodegradability of vegetation-derived DOC ranged from 10 to 90% loss, and was strongly correlated with hydrophilic DOC content. Vegetation such as Sphagnum moss and feathermosses yielded DOC that was quickly metabolized and respired. In contrast, the DOC leached from vegetation such as black spruce was moderately recalcitrant. Changes in DOC chemical characteristics that occurred during microbial metabolism of DOC were quantified using fractionation and fluorescence. The chemical characteristics and biodegradability of DOC in soil pore waters were most similar to the moderately recalcitrant vegetation leachates, and to the microbially altered DOC from all vegetation leachates. ?? 2007 Springer Science+Business Media, LLC.

The Value of Web Log Data in Use-based Design and Testing.

ERIC Educational Resources Information Center

Burton, Mary C.; Walther, Joseph B.

2001-01-01

Suggests Web-based logs contain useful empirical data with which World Wide Web designers and design theorists can assess usability and effectiveness of design choices. Enumerates identification of types of Web server logs, client logs, types and uses of log data, and issues associated with the validity of these data. Presents an approach to…

DataSync - sharing data via filesystem

NASA Astrophysics Data System (ADS)

Ulbricht, Damian; Klump, Jens

2014-05-01

Usually research work is a cycle of to hypothesize, to collect data, to corroborate the hypothesis, and finally to publish the results. In this sequence there are possibilities to base the own work on the work of others. Maybe there are candidates of physical samples listed in the IGSN-Registry and there is no need to go on excursion to acquire physical samples. Hopefully the DataCite catalogue lists already metadata of datasets that meet the constraints of the hypothesis and that are now open for reappraisal. After all, working with the measured data to corroborate the hypothesis involves new methods, and proven methods as well as different software tools. A cohort of intermediate data is created that can be shared with colleagues to discuss the research progress and receive a first evaluation. In consequence, the intermediate data should be versioned to easily get back to valid intermediate data, when you notice you get on the wrong track. Things are different for project managers. They want to know what is currently done, what has been done, and what is the last valid data, if somebody has to continue the work. To make life of members of small science projects easier we developed Datasync [1] as a software for sharing and versioning data. Datasync is designed to synchronize directory trees between different computers of a research team over the internet. The software is developed as JAVA application and watches a local directory tree for changes that are replicated as eSciDoc-objects into an eSciDoc-infrastructure [2] using the eSciDoc REST API. Modifications to the local filesystem automatically create a new version of an eSciDoc-object inside the eSciDoc-infrastructure. This way individual folders can be shared between team members while project managers can get a general idea of current status by synchronizing whole project inventories. Additionally XML metadata from separate files can be managed together with data files inside the eSciDoc-objects. While Datasync's major task is to distribute directory trees, we complement its functionality with the PHP-based application panMetaDocs [3]. panMetaDocs is the successor to panMetaWorks [4] and inherits most of its functionality. Through an internet browser PanMetaDocs provides a web-based overview of the datasets inside the eSciDoc-infrastructure. The software allows to upload further data, to add and edit metadata using the metadata editor, and it disseminates metadata through various channels. In addition, previous versions of a file can be downloaded and access rights can be defined on files and folders to control visibility of files for users of both panMetaDocs and Datasync. panMetaDocs serves as a publication agent for datasets and it serves as a registration agent for dataset DOIs. The application stack presented here allows sharing, versioning, and central storage of data from the very beginning of project activities by using the file synchronization service Datasync. The web-application panMetaDocs complements the functionality of DataSync by providing a dataset publication agent and other tools to handle administrative tasks on the data. [1] http://github.com/ulbricht/datasync [2] http://github.com/escidoc [3] http://panmetadocs.sf.net [4] http://metaworks.pangaea.de

The design of the automated control system for warehouse equipment under radio-electronic manufacturing

NASA Astrophysics Data System (ADS)

Kapulin, D. V.; Chemidov, I. V.; Kazantsev, M. A.

2017-01-01

In the paper, the aspects of design, development and implementation of the automated control system for warehousing under the manufacturing process of the radio-electronic enterprise JSC «Radiosvyaz» are discussed. The architecture of the automated control system for warehousing proposed in the paper consists of a server which is connected to the physically separated information networks: the network with a database server, which stores information about the orders for picking, and the network with the automated storage and retrieval system. This principle allows implementing the requirements for differentiation of access, ensuring the information safety and security requirements. Also, the efficiency of the developed automated solutions in terms of optimizing the warehouse’s logistic characteristics is researched.

Development of intelligent instruments with embedded HTTP servers for control and data acquisition in a cryogenic setup--The hardware, firmware, and software implementation.

PubMed

Antony, Joby; Mathuria, D S; Datta, T S; Maity, Tanmoy

2015-12-01

The power of Ethernet for control and automation technology is being largely understood by the automation industry in recent times. Ethernet with HTTP (Hypertext Transfer Protocol) is one of the most widely accepted communication standards today. Ethernet is best known for being able to control through internet from anywhere in the globe. The Ethernet interface with built-in on-chip embedded servers ensures global connections for crate-less model of control and data acquisition systems which have several advantages over traditional crate-based control architectures for slow applications. This architecture will completely eliminate the use of any extra PLC (Programmable Logic Controller) or similar control hardware in any automation network as the control functions are firmware coded inside intelligent meters itself. Here, we describe the indigenously built project of a cryogenic control system built for linear accelerator at Inter University Accelerator Centre, known as "CADS," which stands for "Complete Automation of Distribution System." CADS deals with complete hardware, firmware, and software implementation of the automated linac cryogenic distribution system using many Ethernet based embedded cryogenic instruments developed in-house. Each instrument works as an intelligent meter called device-server which has the control functions and control loops built inside the firmware itself. Dedicated meters with built-in servers were designed out of ARM (Acorn RISC (Reduced Instruction Set Computer) Machine) and ATMEL processors and COTS (Commercially Off-the-Shelf) SMD (Surface Mount Devices) components, with analog sensor front-end and a digital back-end web server implementing remote procedure call over HTTP for digital control and readout functions. At present, 24 instruments which run 58 embedded servers inside, each specific to a particular type of sensor-actuator combination for closed loop operations, are now deployed and distributed across control LAN (Local Area Network). A group of six categories of such instruments have been identified for all cryogenic applications required for linac operation which were designed to build this medium-scale cryogenic automation setup. These devices have special features like remote rebooters, daughter boards for PIDs (Proportional Integral Derivative), etc., to operate them remotely in radiation areas and also have emergency switches by which each device can be taken to emergency mode temporarily. Finally, all the data are monitored, logged, controlled, and analyzed online at a central control room which has a user-friendly control interface developed using LabVIEW(®). This paper discusses the overall hardware, firmware, software design, and implementation for the cryogenics setup.

Development of intelligent instruments with embedded HTTP servers for control and data acquisition in a cryogenic setup—The hardware, firmware, and software implementation

NASA Astrophysics Data System (ADS)

Antony, Joby; Mathuria, D. S.; Datta, T. S.; Maity, Tanmoy

2015-12-01

The power of Ethernet for control and automation technology is being largely understood by the automation industry in recent times. Ethernet with HTTP (Hypertext Transfer Protocol) is one of the most widely accepted communication standards today. Ethernet is best known for being able to control through internet from anywhere in the globe. The Ethernet interface with built-in on-chip embedded servers ensures global connections for crate-less model of control and data acquisition systems which have several advantages over traditional crate-based control architectures for slow applications. This architecture will completely eliminate the use of any extra PLC (Programmable Logic Controller) or similar control hardware in any automation network as the control functions are firmware coded inside intelligent meters itself. Here, we describe the indigenously built project of a cryogenic control system built for linear accelerator at Inter University Accelerator Centre, known as "CADS," which stands for "Complete Automation of Distribution System." CADS deals with complete hardware, firmware, and software implementation of the automated linac cryogenic distribution system using many Ethernet based embedded cryogenic instruments developed in-house. Each instrument works as an intelligent meter called device-server which has the control functions and control loops built inside the firmware itself. Dedicated meters with built-in servers were designed out of ARM (Acorn RISC (Reduced Instruction Set Computer) Machine) and ATMEL processors and COTS (Commercially Off-the-Shelf) SMD (Surface Mount Devices) components, with analog sensor front-end and a digital back-end web server implementing remote procedure call over HTTP for digital control and readout functions. At present, 24 instruments which run 58 embedded servers inside, each specific to a particular type of sensor-actuator combination for closed loop operations, are now deployed and distributed across control LAN (Local Area Network). A group of six categories of such instruments have been identified for all cryogenic applications required for linac operation which were designed to build this medium-scale cryogenic automation setup. These devices have special features like remote rebooters, daughter boards for PIDs (Proportional Integral Derivative), etc., to operate them remotely in radiation areas and also have emergency switches by which each device can be taken to emergency mode temporarily. Finally, all the data are monitored, logged, controlled, and analyzed online at a central control room which has a user-friendly control interface developed using LabVIEW®. This paper discusses the overall hardware, firmware, software design, and implementation for the cryogenics setup.

Development of intelligent instruments with embedded HTTP servers for control and data acquisition in a cryogenic setup—The hardware, firmware, and software implementation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Antony, Joby; Mathuria, D. S.; Datta, T. S.

The power of Ethernet for control and automation technology is being largely understood by the automation industry in recent times. Ethernet with HTTP (Hypertext Transfer Protocol) is one of the most widely accepted communication standards today. Ethernet is best known for being able to control through internet from anywhere in the globe. The Ethernet interface with built-in on-chip embedded servers ensures global connections for crate-less model of control and data acquisition systems which have several advantages over traditional crate-based control architectures for slow applications. This architecture will completely eliminate the use of any extra PLC (Programmable Logic Controller) or similarmore » control hardware in any automation network as the control functions are firmware coded inside intelligent meters itself. Here, we describe the indigenously built project of a cryogenic control system built for linear accelerator at Inter University Accelerator Centre, known as “CADS,” which stands for “Complete Automation of Distribution System.” CADS deals with complete hardware, firmware, and software implementation of the automated linac cryogenic distribution system using many Ethernet based embedded cryogenic instruments developed in-house. Each instrument works as an intelligent meter called device-server which has the control functions and control loops built inside the firmware itself. Dedicated meters with built-in servers were designed out of ARM (Acorn RISC (Reduced Instruction Set Computer) Machine) and ATMEL processors and COTS (Commercially Off-the-Shelf) SMD (Surface Mount Devices) components, with analog sensor front-end and a digital back-end web server implementing remote procedure call over HTTP for digital control and readout functions. At present, 24 instruments which run 58 embedded servers inside, each specific to a particular type of sensor-actuator combination for closed loop operations, are now deployed and distributed across control LAN (Local Area Network). A group of six categories of such instruments have been identified for all cryogenic applications required for linac operation which were designed to build this medium-scale cryogenic automation setup. These devices have special features like remote rebooters, daughter boards for PIDs (Proportional Integral Derivative), etc., to operate them remotely in radiation areas and also have emergency switches by which each device can be taken to emergency mode temporarily. Finally, all the data are monitored, logged, controlled, and analyzed online at a central control room which has a user-friendly control interface developed using LabVIEW{sup ®}. This paper discusses the overall hardware, firmware, software design, and implementation for the cryogenics setup.« less

Dissolved organic carbon and its potential predictors in eutrophic lakes.

PubMed

Toming, Kaire; Kutser, Tiit; Tuvikene, Lea; Viik, Malle; Nõges, Tiina

2016-10-01

Understanding of the true role of lakes in the global carbon cycle requires reliable estimates of dissolved organic carbon (DOC) and there is a strong need to develop remote sensing methods for mapping lake carbon content at larger regional and global scales. Part of DOC is optically inactive. Therefore, lake DOC content cannot be mapped directly. The objectives of the current study were to estimate the relationships of DOC and other water and environmental variables in order to find the best proxy for remote sensing mapping of lake DOC. The Boosted Regression Trees approach was used to clarify in which relative proportions different water and environmental variables determine DOC. In a studied large and shallow eutrophic lake the concentrations of DOC and coloured dissolved organic matter (CDOM) were rather high while the seasonal and interannual variability of DOC concentrations was small. The relationships between DOC and other water and environmental variables varied seasonally and interannually and it was challenging to find proxies for describing seasonal cycle of DOC. Chlorophyll a (Chl a), total suspended matter and Secchi depth were correlated with DOC and therefore are possible proxies for remote sensing of seasonal changes of DOC in ice free period, while for long term interannual changes transparency-related variables are relevant as DOC proxies. CDOM did not appear to be a good predictor of the seasonality of DOC concentration in Lake Võrtsjärv since the CDOM-DOC coupling varied seasonally. However, combining the data from Võrtsjärv with the published data from six other eutrophic lakes in the world showed that CDOM was the most powerful predictor of DOC and can be used in remote sensing of DOC concentrations in eutrophic lakes. Copyright © 2016 Elsevier Ltd. All rights reserved.

Soil-solution partitioning of DOC in acid organic soils: Results from a UK field acidification and alkalization experiment

NASA Astrophysics Data System (ADS)

Oulehle, Filip; Jones, Timothy; Burden, Annette; Evans, Chris

2013-04-01

Dissolved organic carbon (DOC) is an important component of the global carbon (C) cycle and has profound impacts on water chemistry and metabolism in lakes and rivers. Reported increases of DOC concentration in surface waters across Europe and Northern America have been attributed to several drivers; from changing climate and land-use to eutrophication and declining acid deposition. The last of these suggests that acidic deposition suppressed the solubility of DOC, and that this historic suppression is now being reversed by reducing emissions of acidifying pollutants. We studied a set of four parallel acidification and alkalization experiments in organic rich soils which, after three years of manipulation, have shown clear soil solution DOC responses to acidity change. We tested whether these DOC concentration changes were related to changes in the acid/base properties of DOC. Based on laboratory determination of DOC site density (S.D. = amount of carboxylic groups per milligram DOC) and charge density (C.D. = organic acid anion concentration per milligram DOC) we found that the change in DOC soil-solution partitioning was tightly related to the change in degree of dissociation (α = C.D./S.D. ratio) of organic acids (R2=0.74, p<0.01). Carbon turnover in soil organic matter (SOM), determined by soil respiration and β-D-glucosidase enzyme activity measurements, also appears to have some impact on DOC leaching, via constraints on the actual supply of available DOC from SOM; when the turnover rate of C in SOM is low, the effect of α on DOC leaching is reduced. Thus, differences in the magnitude of DOC changes seen across different environments might be explained by interactions between physicochemical restrictions of DOC soil-solution partitioning, and SOM carbon turnover effects on DOC supply.

Effect of Photochemical Transformation on Dissolved Organic Carbon Concentration and Bioavailability from Watersheds with Varying Landcover

NASA Astrophysics Data System (ADS)

Vermilyea, A.; Sanders, A.; Vazquez, E.

2017-12-01

The transformation of freshwater dissolved organic carbon (DOC) can have important implications for water quality, aquatic ecosystem health, and our climate. DOC is an important nutrient for heterotrophic microorganisms near the base of the aquatic food chain and the extent of conversion of DOC to CO2 is a critical piece of the global carbon cycle. Photochemical pathways have the potential to transform recalcitrant DOC into more labile forms that can then be converted to smaller DOC molecules and eventually be completely mineralized to CO2. This may lead to a DOC pool with different bioavailability depending on the structural composition of the original DOC pool and the mechanistic pathways undergone during transformation. This study aimed to measure the changes in DOC concentration and bioavailability due solely to photochemical processes in three watersheds of northern Vermont, USA that have varied land cover, land use (LCLU) attributes. Our hypothesis was that photochemical transformations will lead to (1) an overall loss of DOC due to mineralization to CO2 and (2) a relative increase in the bioavailable fraction of DOC. Additionally, the influence of LCLU and base flow versus storm flow on both mineralization rates and changes in DOC bioavailability was investigated. Irradiation of filtered samples in quartz vessels under sunlight led to small changes in DOC concentration over time, but significant changes in DOC bioavailability. In general, fluorescence excitation-emission matrices (EEMs) showed a shift from an initially more humic-like DOC pool, to a more protein-like (bioavailable) DOC pool. Specific UV index (SUVA) along with bioavailable DOC (BDOC) incubations were also used to characterize DOC and its bioavailability. There were only small differences in the DOC transformation that took place among sites, possibly due to only small differences in the initial bioavailability and fluorescent properties between water samples. Photochemical transformation appears to play an important role in the transformation of a more recalcitrant (humic) pool of DOC into a more bioavailable DOC pool that can then be utilized by aquatic heterotrophs and ultimately be converted to CO2.

Understanding DOC Mobilization Dynamics Through High Frequency Measurements in a Headwater Catchment

NASA Astrophysics Data System (ADS)

Werner, B.; Musolff, A.; Lechtenfeld, O.; de Rooij, G. H.; Fleckenstein, J. H.

2017-12-01

Increasing dissolved organic carbon (DOC) exports from headwater catchments impact the quality of downstream waters and pose challenges to water supply. The importance of riparian zones for DOC export from catchments in humid, temperate climates has generally been acknowledged, but the hydrological controls and biogeochemical factors that govern mobilization of DOC from riparian zones remain elusive. By analyzing high-frequency time series of UV-VIS based water quality we therefore aim at a better understanding on temporal dynamics of DOC mobilization and exports. In a first step a one year high frequency (15 minutes) data set from a headwater catchment in the Harz Mountains (Germany) was systematically analyzed for event-based patterns in DOC concentrations. Here, a simplistic linear model was generated to explain DOC concentration level and variability in the stream. Furthermore, spectral (e.g. slopes and SUVA254) and molecular (FT-ICR-MS) characterization of DOC was used to fingerprint in-stream DOC during events. Continuous DOC concentrations were best predicted (R², NSE = 0.53) by instantaneous discharge (Q) and antecede wetness conditions of the last 30 days (AWC30 = Precip.30/PET30) as well as mean air temperature (Tmean30) and mean discharge (Qmean30) of the preceding 30 days. Analyses of 36 events revealed seasonal trends for the slope, intercept and R² of linear log(DOC)-log(Q) regressions that can be best explained by the mean air temperature of the preceding 15 days. Continuously available optical DOC quality parameters SUVA254 and spectral slope (275 nm - 295 nm) systematically changed with shifts in discharge and in DOC concentration. This is underlined by selected FT-ICR-MS measurements indicating higher DOC aromaticity and oxygen content at high flow conditions. The change of DOC quality parameters during events indicate a shift in the activated source zones: DOC with a different quality was mobilized during high flow conditions when higher groundwater levels connected formerly disconnected DOC source zones to the stream. We conclude that the high concentration variability of DOC can be explained by a few controlling variables only. These variables can be linked to event-based DOC source activation and more seasonal controls of DOC production.

An architecture for real-time vision processing

NASA Technical Reports Server (NTRS)

Chien, Chiun-Hong

1994-01-01

To study the feasibility of developing an architecture for real time vision processing, a task queue server and parallel algorithms for two vision operations were designed and implemented on an i860-based Mercury Computing System 860VS array processor. The proposed architecture treats each vision function as a task or set of tasks which may be recursively divided into subtasks and processed by multiple processors coordinated by a task queue server accessible by all processors. Each idle processor subsequently fetches a task and associated data from the task queue server for processing and posts the result to shared memory for later use. Load balancing can be carried out within the processing system without the requirement for a centralized controller. The author concludes that real time vision processing cannot be achieved without both sequential and parallel vision algorithms and a good parallel vision architecture.

AtlasCBS: a web server to map and explore chemico-biological space

NASA Astrophysics Data System (ADS)

Cortés-Cabrera, Álvaro; Morreale, Antonio; Gago, Federico; Abad-Zapatero, Celerino

2012-09-01

New approaches are needed that can help decrease the unsustainable failure in small-molecule drug discovery. Ligand Efficiency Indices (LEI) are making a great impact on early-stage compound selection and prioritization. Given a target-ligand database with chemical structures and associated biological affinities/activities for a target, the AtlasCBS server generates two-dimensional, dynamical representations of its contents in terms of LEI. These variables allow an effective decoupling of the chemical (angular) and biological (radial) components. BindingDB, PDBBind and ChEMBL databases are currently implemented. Proprietary datasets can also be uploaded and compared. The utility of this atlas-like representation in the future of drug design is highlighted with some examples. The web server can be accessed at http://ub.cbm.uam.es/atlascbs and https://www.ebi.ac.uk/chembl/atlascbs.

Robust biometrics based authentication and key agreement scheme for multi-server environments using smart cards.

PubMed

Lu, Yanrong; Li, Lixiang; Yang, Xing; Yang, Yixian

2015-01-01

Biometrics authenticated schemes using smart cards have attracted much attention in multi-server environments. Several schemes of this type where proposed in the past. However, many of them were found to have some design flaws. This paper concentrates on the security weaknesses of the three-factor authentication scheme by Mishra et al. After careful analysis, we find their scheme does not really resist replay attack while failing to provide an efficient password change phase. We further propose an improvement of Mishra et al.'s scheme with the purpose of preventing the security threats of their scheme. We demonstrate the proposed scheme is given to strong authentication against several attacks including attacks shown in the original scheme. In addition, we compare the performance and functionality with other multi-server authenticated key schemes.

Robust Biometrics Based Authentication and Key Agreement Scheme for Multi-Server Environments Using Smart Cards

PubMed Central

Lu, Yanrong; Li, Lixiang; Yang, Xing; Yang, Yixian

2015-01-01

Biometrics authenticated schemes using smart cards have attracted much attention in multi-server environments. Several schemes of this type where proposed in the past. However, many of them were found to have some design flaws. This paper concentrates on the security weaknesses of the three-factor authentication scheme by Mishra et al. After careful analysis, we find their scheme does not really resist replay attack while failing to provide an efficient password change phase. We further propose an improvement of Mishra et al.’s scheme with the purpose of preventing the security threats of their scheme. We demonstrate the proposed scheme is given to strong authentication against several attacks including attacks shown in the original scheme. In addition, we compare the performance and functionality with other multi-server authenticated key schemes. PMID:25978373

AtlasCBS: a web server to map and explore chemico-biological space.

PubMed

Cortés-Cabrera, Alvaro; Morreale, Antonio; Gago, Federico; Abad-Zapatero, Celerino

2012-09-01

New approaches are needed that can help decrease the unsustainable failure in small-molecule drug discovery. Ligand Efficiency Indices (LEI) are making a great impact on early-stage compound selection and prioritization. Given a target-ligand database with chemical structures and associated biological affinities/activities for a target, the AtlasCBS server generates two-dimensional, dynamical representations of its contents in terms of LEI. These variables allow an effective decoupling of the chemical (angular) and biological (radial) components. BindingDB, PDBBind and ChEMBL databases are currently implemented. Proprietary datasets can also be uploaded and compared. The utility of this atlas-like representation in the future of drug design is highlighted with some examples. The web server can be accessed at http://ub.cbm.uam.es/atlascbs and https://www.ebi.ac.uk/chembl/atlascbs.

14 CFR 29.735 - Brakes.

Code of Federal Regulations, 2012 CFR

2012-01-01

... STANDARDS: TRANSPORT CATEGORY ROTORCRAFT Design and Construction Landing Gear § 29.735 Brakes. For... dry, smooth pavement. [Doc. No. 5084, 29 FR 16150, Dec. 3, 1964, as amended by Amdt. 29-24, 49 FR...

14 CFR 29.735 - Brakes.

Code of Federal Regulations, 2011 CFR

2011-01-01

... STANDARDS: TRANSPORT CATEGORY ROTORCRAFT Design and Construction Landing Gear § 29.735 Brakes. For... dry, smooth pavement. [Doc. No. 5084, 29 FR 16150, Dec. 3, 1964, as amended by Amdt. 29-24, 49 FR...

14 CFR 29.735 - Brakes.

Code of Federal Regulations, 2013 CFR

2013-01-01

... STANDARDS: TRANSPORT CATEGORY ROTORCRAFT Design and Construction Landing Gear § 29.735 Brakes. For... dry, smooth pavement. [Doc. No. 5084, 29 FR 16150, Dec. 3, 1964, as amended by Amdt. 29-24, 49 FR...

14 CFR 29.735 - Brakes.

Code of Federal Regulations, 2010 CFR

2010-01-01

... STANDARDS: TRANSPORT CATEGORY ROTORCRAFT Design and Construction Landing Gear § 29.735 Brakes. For... dry, smooth pavement. [Doc. No. 5084, 29 FR 16150, Dec. 3, 1964, as amended by Amdt. 29-24, 49 FR...

14 CFR 29.735 - Brakes.

Code of Federal Regulations, 2014 CFR

2014-01-01

... STANDARDS: TRANSPORT CATEGORY ROTORCRAFT Design and Construction Landing Gear § 29.735 Brakes. For... dry, smooth pavement. [Doc. No. 5084, 29 FR 16150, Dec. 3, 1964, as amended by Amdt. 29-24, 49 FR...

The Comparison of Different Heterotrophic Bacteria on the Decomposition of DOC molecule

NASA Astrophysics Data System (ADS)

Xie, R.; Zheng, Q.; Jiao, N.

2016-02-01

Marine dissolved organic carbon (DOC) pool is one of the largest reservoirs of organic carbon on Earth. Heterotrophic bacteria are the primary biotic force regulating the fate of marine DOC. Comparison of genomic data, microbes belonging to different clades have diverse DOC molecule utilization genes. That's give us a hint that different microbial groups may have their own pattern to decompose DOC, biosynthesize diverse DOC molecule and contribute to the in situ DOC reservoirs in the ocean. The interaction between marine microbes and DOC molecule is hotspots in current research. We will choose some important microbial groups (e.g., Roseobacter, Altermonas, Halomonas, SAR11 and CFB) to identify their contribution to environmental DOC pool and their specific recalcitrant DOC component using ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS). Combined with the composition of hydrolases, lyases and ligases in their genomes, we try to establish a linkage between the specific DOC composition and microbial genetic information. Future more the environmental metagenomic data would help us understand the relationship between the endemic DOC composition and microbial communities in the environment.

Enhancing UCSF Chimera through web services

PubMed Central

Huang, Conrad C.; Meng, Elaine C.; Morris, John H.; Pettersen, Eric F.; Ferrin, Thomas E.

2014-01-01

Integrating access to web services with desktop applications allows for an expanded set of application features, including performing computationally intensive tasks and convenient searches of databases. We describe how we have enhanced UCSF Chimera (http://www.rbvi.ucsf.edu/chimera/), a program for the interactive visualization and analysis of molecular structures and related data, through the addition of several web services (http://www.rbvi.ucsf.edu/chimera/docs/webservices.html). By streamlining access to web services, including the entire job submission, monitoring and retrieval process, Chimera makes it simpler for users to focus on their science projects rather than data manipulation. Chimera uses Opal, a toolkit for wrapping scientific applications as web services, to provide scalable and transparent access to several popular software packages. We illustrate Chimera's use of web services with an example workflow that interleaves use of these services with interactive manipulation of molecular sequences and structures, and we provide an example Python program to demonstrate how easily Opal-based web services can be accessed from within an application. Web server availability: http://webservices.rbvi.ucsf.edu/opal2/dashboard?command=serviceList. PMID:24861624

76 FR 4254 - Irish Potatoes Grown in Certain Designated Counties in Idaho, and Malheur County, Oregon...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-01-25

... Service 7 CFR Part 945 [Doc. No. AMS-FV-10-0109; FV11-945-1] Irish Potatoes Grown in Certain Designated... among eligible producers of Irish potatoes in certain designated counties in Idaho, and Malheur County... Irish potatoes grown in the production area. DATES: The referendum will be conducted from March 5 to...

76 FR 35997 - Onions Grown in Certain Designated Counties in Idaho, and Malheur County, OR; Modification of...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-21

... Service 7 CFR Part 958 [Doc. No. AMS-FV-11-0025; FV11-958-1 PR] Onions Grown in Certain Designated... handling regulation for onions handled under the Idaho-Eastern Oregon onion marketing order. The marketing order regulates the handling of onions grown in designated counties in Idaho, and Malheur County, Oregon...

Stable and radiocarbon isotopic composition of dissolved organic matter in the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Walker, B. D.; Druffel, E. R. M.; Kolasinski, J.; Roberts, B. J.; Xu, X.; Rosenheim, B. E.

2017-08-01

Dissolved organic carbon (DOC) is of primary importance to marine ecosystems and the global carbon cycle. Stable carbon (δ13C) and radiocarbon (Δ14C) isotopic measurements are powerful tools for evaluating DOC sources and cycling. However, the isotopic signature of DOC in the Gulf of Mexico (GOM) remains almost completely unknown. Here we present the first DOC Δ14C and δ13C depth profiles from the GOM. Our results suggest the Mississippi River exports large amounts of DOC with an anthropogenic "bomb" Δ14C signature. Riverine DOC is removed and recycled offshore, and some marine production of DOC is observed in the river plume. Offshore profiles show that DOC has higher Δ14C than its Caribbean feed waters, indicative of a modern deep DOC source in the GOM basin. Finally, high DOC with negative δ13C and Δ14C values were observed near the Macondo Wellhead, suggesting a transformation of Deepwater Horizon hydrocarbons into a persistent population of DOC.

Degradation potentials of dissolved organic carbon (DOC) from thawed permafrost peat

PubMed Central

Panneer Selvam, Balathandayuthabani; Lapierre, Jean-François; Guillemette, Francois; Voigt, Carolina; Lamprecht, Richard E.; Biasi, Christina; Christensen, Torben R.; Martikainen, Pertti J.; Berggren, Martin

2017-01-01

Global warming can substantially affect the export of dissolved organic carbon (DOC) from peat-permafrost to aquatic systems. The direct degradability of such peat-derived DOC, however, is poorly constrained because previous permafrost thaw studies have mainly addressed mineral soil catchments or DOC pools that have already been processed in surface waters. We incubated peat cores from a palsa mire to compare an active layer and an experimentally thawed permafrost layer with regard to DOC composition and degradation potentials of pore water DOC. Our results show that DOC from the thawed permafrost layer had high initial degradation potentials compared with DOC from the active layer. In fact, the DOC that showed the highest bio- and photo-degradability, respectively, originated in the thawed permafrost layer. Our study sheds new light on the DOC composition of peat-permafrost directly upon thaw and suggests that past estimates of carbon-dioxide emissions from thawed peat permafrost may be biased as they have overlooked the initial mineralization potential of the exported DOC. PMID:28378792

14 CFR 27.735 - Brakes.

Code of Federal Regulations, 2011 CFR

2011-01-01

... STANDARDS: NORMAL CATEGORY ROTORCRAFT Design and Construction Landing Gear § 27.735 Brakes. For rotorcraft... dry, smooth pavement. [Doc. No. 5074, 29 FR 15695, Nov. 24, 1964, as amended by Amdt. 27-21, 49 FR...

14 CFR 27.735 - Brakes.

Code of Federal Regulations, 2012 CFR

2012-01-01

... STANDARDS: NORMAL CATEGORY ROTORCRAFT Design and Construction Landing Gear § 27.735 Brakes. For rotorcraft... dry, smooth pavement. [Doc. No. 5074, 29 FR 15695, Nov. 24, 1964, as amended by Amdt. 27-21, 49 FR...

14 CFR 27.735 - Brakes.

Code of Federal Regulations, 2013 CFR

2013-01-01

... STANDARDS: NORMAL CATEGORY ROTORCRAFT Design and Construction Landing Gear § 27.735 Brakes. For rotorcraft... dry, smooth pavement. [Doc. No. 5074, 29 FR 15695, Nov. 24, 1964, as amended by Amdt. 27-21, 49 FR...

14 CFR 27.735 - Brakes.

Code of Federal Regulations, 2010 CFR

2010-01-01

... STANDARDS: NORMAL CATEGORY ROTORCRAFT Design and Construction Landing Gear § 27.735 Brakes. For rotorcraft... dry, smooth pavement. [Doc. No. 5074, 29 FR 15695, Nov. 24, 1964, as amended by Amdt. 27-21, 49 FR...

14 CFR 27.735 - Brakes.

Code of Federal Regulations, 2014 CFR

2014-01-01

... STANDARDS: NORMAL CATEGORY ROTORCRAFT Design and Construction Landing Gear § 27.735 Brakes. For rotorcraft... dry, smooth pavement. [Doc. No. 5074, 29 FR 15695, Nov. 24, 1964, as amended by Amdt. 27-21, 49 FR...

GLobal Integrated Design Environment (GLIDE): A Concurrent Engineering Application

NASA Technical Reports Server (NTRS)

McGuire, Melissa L.; Kunkel, Matthew R.; Smith, David A.

2010-01-01

The GLobal Integrated Design Environment (GLIDE) is a client-server software application purpose-built to mitigate issues associated with real time data sharing in concurrent engineering environments and to facilitate discipline-to-discipline interaction between multiple engineers and researchers. GLIDE is implemented in multiple programming languages utilizing standardized web protocols to enable secure parameter data sharing between engineers and researchers across the Internet in closed and/or widely distributed working environments. A well defined, HyperText Transfer Protocol (HTTP) based Application Programming Interface (API) to the GLIDE client/server environment enables users to interact with GLIDE, and each other, within common and familiar tools. One such common tool, Microsoft Excel (Microsoft Corporation), paired with its add-in API for GLIDE, is discussed in this paper. The top-level examples given demonstrate how this interface improves the efficiency of the design process of a concurrent engineering study while reducing potential errors associated with manually sharing information between study participants.

The UMLS Knowledge Source Server: an experience in Web 2.0 technologies.

PubMed

Thorn, Karen E; Bangalore, Anantha K; Browne, Allen C

2007-10-11

The UMLS Knowledge Source Server (UMLSKS), developed at the National Library of Medicine (NLM), makes the knowledge sources of the Unified Medical Language System (UMLS) available to the research community over the Internet. In 2003, the UMLSKS was redesigned utilizing state-of-the-art technologies available at that time. That design offered a significant improvement over the prior version but presented a set of technology-dependent issues that limited its functionality and usability. Four areas of desired improvement were identified: software interfaces, web interface content, system maintenance/deployment, and user authentication. By employing next generation web technologies, newer authentication paradigms and further refinements in modular design methods, these areas could be addressed and corrected to meet the ever increasing needs of UMLSKS developers. In this paper we detail the issues present with the existing system and describe the new system's design using new technologies considered entrants in the Web 2.0 development era.

Bhageerath-H: A homology/ab initio hybrid server for predicting tertiary structures of monomeric soluble proteins

PubMed Central

2014-01-01

Background The advent of human genome sequencing project has led to a spurt in the number of protein sequences in the databanks. Success of structure based drug discovery severely hinges on the availability of structures. Despite significant progresses in the area of experimental protein structure determination, the sequence-structure gap is continually widening. Data driven homology based computational methods have proved successful in predicting tertiary structures for sequences sharing medium to high sequence similarities. With dwindling similarities of query sequences, advanced homology/ ab initio hybrid approaches are being explored to solve structure prediction problem. Here we describe Bhageerath-H, a homology/ ab initio hybrid software/server for predicting protein tertiary structures with advancing drug design attempts as one of the goals. Results Bhageerath-H web-server was validated on 75 CASP10 targets which showed TM-scores ≥0.5 in 91% of the cases and Cα RMSDs ≤5Å from the native in 58% of the targets, which is well above the CASP10 water mark. Comparison with some leading servers demonstrated the uniqueness of the hybrid methodology in effectively sampling conformational space, scoring best decoys and refining low resolution models to high and medium resolution. Conclusion Bhageerath-H methodology is web enabled for the scientific community as a freely accessible web server. The methodology is fielded in the on-going CASP11 experiment. PMID:25521245

Implementation of Medical Information Exchange System Based on EHR Standard

PubMed Central

Han, Soon Hwa; Kim, Sang Guk; Jeong, Jun Yong; Lee, Bi Na; Choi, Myeong Seon; Kim, Il Kon; Park, Woo Sung; Ha, Kyooseob; Cho, Eunyoung; Kim, Yoon; Bae, Jae Bong

2010-01-01

Objectives To develop effective ways of sharing patients' medical information, we developed a new medical information exchange system (MIES) based on a registry server, which enabled us to exchange different types of data generated by various systems. Methods To assure that patient's medical information can be effectively exchanged under different system environments, we adopted the standardized data transfer methods and terminologies suggested by the Center for Interoperable Electronic Healthcare Record (CIEHR) of Korea in order to guarantee interoperability. Regarding information security, MIES followed the security guidelines suggested by the CIEHR of Korea. This study aimed to develop essential security systems for the implementation of online services, such as encryption of communication, server security, database security, protection against hacking, contents, and network security. Results The registry server managed information exchange as well as the registration information of the clinical document architecture (CDA) documents, and the CDA Transfer Server was used to locate and transmit the proper CDA document from the relevant repository. The CDA viewer showed the CDA documents via connection with the information systems of related hospitals. Conclusions This research chooses transfer items and defines document standards that follow CDA standards, such that exchange of CDA documents between different systems became possible through ebXML. The proposed MIES was designed as an independent central registry server model in order to guarantee the essential security of patients' medical information. PMID:21818447

State dependent arrival in bulk retrial queueing system with immediate Bernoulli feedback, multiple vacations and threshold

NASA Astrophysics Data System (ADS)

Niranjan, S. P.; Chandrasekaran, V. M.; Indhira, K.

2017-11-01

The objective of this paper is to analyse state dependent arrival in bulk retrial queueing system with immediate Bernoulli feedback, multiple vacations, threshold and constant retrial policy. Primary customers are arriving into the system in bulk with different arrival rates λ a and λ b . If arriving customers find the server is busy then the entire batch will join to orbit. Customer from orbit request service one by one with constant retrial rate γ. On the other hand if an arrival of customers finds the server is idle then customers will be served in batches according to general bulk service rule. After service completion, customers may request service again with probability δ as feedback or leave from the system with probability 1 - δ. In the service completion epoch, if the orbit size is zero then the server leaves for multiple vacations. The server continues the vacation until the orbit size reaches the value ‘N’ (N > b). At the vacation completion, if the orbit size is ‘N’ then the server becomes ready to provide service for customers from the main pool or from the orbit. For the designed queueing model, probability generating function of the queue size at an arbitrary time will be obtained by using supplementary variable technique. Various performance measures will be derived with suitable numerical illustrations.

AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures.

PubMed

Zambrano, Rafael; Jamroz, Michal; Szczasiuk, Agata; Pujols, Jordi; Kmiecik, Sebastian; Ventura, Salvador

2015-07-01

Protein aggregation underlies an increasing number of disorders and constitutes a major bottleneck in the development of therapeutic proteins. Our present understanding on the molecular determinants of protein aggregation has crystalized in a series of predictive algorithms to identify aggregation-prone sites. A majority of these methods rely only on sequence. Therefore, they find difficulties to predict the aggregation properties of folded globular proteins, where aggregation-prone sites are often not contiguous in sequence or buried inside the native structure. The AGGRESCAN3D (A3D) server overcomes these limitations by taking into account the protein structure and the experimental aggregation propensity scale from the well-established AGGRESCAN method. Using the A3D server, the identified aggregation-prone residues can be virtually mutated to design variants with increased solubility, or to test the impact of pathogenic mutations. Additionally, A3D server enables to take into account the dynamic fluctuations of protein structure in solution, which may influence aggregation propensity. This is possible in A3D Dynamic Mode that exploits the CABS-flex approach for the fast simulations of flexibility of globular proteins. The A3D server can be accessed at http://biocomp.chem.uw.edu.pl/A3D/. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

Implementation of Medical Information Exchange System Based on EHR Standard.

PubMed

Han, Soon Hwa; Lee, Min Ho; Kim, Sang Guk; Jeong, Jun Yong; Lee, Bi Na; Choi, Myeong Seon; Kim, Il Kon; Park, Woo Sung; Ha, Kyooseob; Cho, Eunyoung; Kim, Yoon; Bae, Jae Bong

2010-12-01

To develop effective ways of sharing patients' medical information, we developed a new medical information exchange system (MIES) based on a registry server, which enabled us to exchange different types of data generated by various systems. To assure that patient's medical information can be effectively exchanged under different system environments, we adopted the standardized data transfer methods and terminologies suggested by the Center for Interoperable Electronic Healthcare Record (CIEHR) of Korea in order to guarantee interoperability. Regarding information security, MIES followed the security guidelines suggested by the CIEHR of Korea. This study aimed to develop essential security systems for the implementation of online services, such as encryption of communication, server security, database security, protection against hacking, contents, and network security. The registry server managed information exchange as well as the registration information of the clinical document architecture (CDA) documents, and the CDA Transfer Server was used to locate and transmit the proper CDA document from the relevant repository. The CDA viewer showed the CDA documents via connection with the information systems of related hospitals. This research chooses transfer items and defines document standards that follow CDA standards, such that exchange of CDA documents between different systems became possible through ebXML. The proposed MIES was designed as an independent central registry server model in order to guarantee the essential security of patients' medical information.

Distributed software framework and continuous integration in hydroinformatics systems

NASA Astrophysics Data System (ADS)

Zhou, Jianzhong; Zhang, Wei; Xie, Mengfei; Lu, Chengwei; Chen, Xiao

2017-08-01

When encountering multiple and complicated models, multisource structured and unstructured data, complex requirements analysis, the platform design and integration of hydroinformatics systems become a challenge. To properly solve these problems, we describe a distributed software framework and it’s continuous integration process in hydroinformatics systems. This distributed framework mainly consists of server cluster for models, distributed database, GIS (Geographic Information System) servers, master node and clients. Based on it, a GIS - based decision support system for joint regulating of water quantity and water quality of group lakes in Wuhan China is established.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, Mathew; Bowen, Brian; Coles, Dwight

The Middleware Automated Deployment Utilities consists the these three components: MAD: Utility designed to automate the deployment of java applications to multiple java application servers. The product contains a front end web utility and backend deployment scripts. MAR: Web front end to maintain and update the components inside database. MWR-Encrypt: Web utility to convert a text string to an encrypted string that is used by the Oracle Weblogic application server. The encryption is done using the built in functions if the Oracle Weblogic product and is mainly used to create an encrypted version of a database password.

Field-analysis of potable water quality and ozone efficiency in ozone-assisted biological filtration systems for surface water treatment.

PubMed

Zanacic, Enisa; Stavrinides, John; McMartin, Dena W

2016-11-01

Potable water treatment in small communities is challenging due to a complexity of factors starting with generally poor raw water sources, a smaller tax and consumption base that limit capital and operating funds, and culminating in what is typically a less sophisticated and robust water treatment plant for production and delivery of safe, high quality potable water. The design and optimization of modular ozone-assisted biological filtration systems can address some of these challenges. In surface water treatment, the removal of organic matter (e.g., dissolved organic carbon - DOC), inorganic nutrients and other exposure-related contaminants (e.g., turbidity and dissolved solids) from the raw water source is essential. Thus, a combination of chemical and biological oxidation processes can produce an effective and efficient water treatment plant design that is also affordable and robust. To that end, the ozone-assisted biological filtration water treatment plants in two communities were evaluated to determine the efficacy of oxidation and contaminant removal processes. The results of testing for in-field system performance indicate that plant performance is particularly negatively impacted by high alkalinity, high organics loading, and turbidity. Both bicarbonate and carbonate alkalinity were observed to impede ozone contact and interaction with DOC, resulting in lower than anticipated DOC oxidation efficiency and bioavailability. The ozone dosage at both water treatment plants must be calculated on a more routine basis to better reflect both the raw water DOC concentration and presence of alkalinities to ensure maximized organics oxidation and minimization of trihalomethanes production. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Carbon Isotope Composition as an Indicator of DOC Sources to a Stream During Events in a Temperate Forested Catchment

NASA Astrophysics Data System (ADS)

Doctor, D. H.; Sebestyen, S. D.; Aiken, G. R.; Shanley, J. B.; Kendall, C.; Boyer, E. W.

2006-12-01

Increased DOC flux in streams and rivers is commonly observed during high runoff regimes, however DOC concentrations alone do not provide information about multiple sources or pathways of DOC to streams. In an effort to gain this information, we measured DOC concentrations and stable carbon isotope composition (δ13C-DOC) on samples collected at high-frequency during events at Sleepers River Research Watershed in Vermont, USA. During snowmelt and storm events, peaks in stream DOC concentration (up to 10.5 mg/L) were coincident with peaks in flow. Stream water δ13C-DOC measurements ranged between -23.7‰ and - 28.9‰ and indicated changing sources of DOC during events; the highest δ13C-DOC values occurred consistently at the lowest flows, and the lowest δ13C-DOC values occurred with peaks in discharge. Water samples collected from shallow wells and stacked soil lysimeters showed the highest DOC concentrations in the most shallow (<0.5 m) lysimeter waters, and the lowest concentrations in the deeper (>1.5 m) well waters. Wells and lysimeters exhibited a range of δ13C-DOC values similar to those observed in the stream; however, samples collected from shallow horizons at nested wells and lysimeters consistently showed lower δ13C-DOC values than those from greater depths. Maple leaf litter collected from across the watershed provided an end-member of fresh organic material, with average δ13C composition of -31.3±0.7‰ (n=57), which is lower than the lowest measured DOC values in any of the stream, well, or lysimeter waters. A subset of stream waters were fractionated onto XAD4 and XAD8 resins; the hydrophobic acid fraction (XAD8) had consistently lower δ13C values than the transphilic acid fraction (XAD4), and both of these were lower than those of the bulk DOC. Samples with lower δ13C-DOC values also exhibited higher SUVA-254 values, i.e. greater aromaticity. Thus, lower δ13C-DOC values are interpreted as an indicator of relatively "fresh", more aromatic and more biologically labile material while higher δ13C-DOC values indicate relatively more degraded material. Since lower δ13C-DOC values were observed in the shallowest well and lysimeter waters and in stream water during periods of highest DOC flux, we surmise that fresh DOC is mobilized to the stream along relatively shallow flowpaths during high flows, and that a second source of more degraded DOC supplies background concentrations to the stream at lower flows.

The D3 Middleware Architecture

NASA Technical Reports Server (NTRS)

Walton, Joan; Filman, Robert E.; Korsmeyer, David J.; Lee, Diana D.; Mak, Ron; Patel, Tarang

2002-01-01

DARWIN is a NASA developed, Internet-based system for enabling aerospace researchers to securely and remotely access and collaborate on the analysis of aerospace vehicle design data, primarily the results of wind-tunnel testing and numeric (e.g., computational fluid-dynamics) model executions. DARWIN captures, stores and indexes data; manages derived knowledge (such as visualizations across multiple datasets); and provides an environment for designers to collaborate in the analysis of test results. DARWIN is an interesting application because it supports high-volumes of data. integrates multiple modalities of data display (e.g., images and data visualizations), and provides non-trivial access control mechanisms. DARWIN enables collaboration by allowing not only sharing visualizations of data, but also commentary about and views of data. Here we provide an overview of the architecture of D3, the third generation of DARWIN. Earlier versions of DARWIN were characterized by browser-based interfaces and a hodge-podge of server technologies: CGI scripts, applets, PERL, and so forth. But browsers proved difficult to control, and a proliferation of computational mechanisms proved inefficient and difficult to maintain. D3 substitutes a pure-Java approach for that medley: A Java client communicates (though RMI over HTTPS) with a Java-based application server. Code on the server accesses information from JDBC databases, distributed LDAP security services, and a collaborative information system. D3 is a three tier-architecture, but unlike 'E-commerce' applications, the data usage pattern suggests different strategies than traditional Enterprise Java Beans - we need to move volumes of related data together, considerable processing happens on the client, and the 'business logic' on the server-side is primarily data integration and collaboration. With D3, we are extending DARWIN to handle other data domains and to be a distributed system, where a single login allows a user transparent access to test results from multiple servers and authority domains.

A WebGIS-based system for analyzing and visualizing air quality data for Shanghai Municipality

NASA Astrophysics Data System (ADS)

Wang, Manyi; Liu, Chaoshun; Gao, Wei

2014-10-01

An online visual analytical system based on Java Web and WebGIS for air quality data for Shanghai Municipality was designed and implemented to quantitatively analyze and qualitatively visualize air quality data. By analyzing the architecture of WebGIS and Java Web, we firstly designed the overall scheme for system architecture, then put forward the software and hardware environment and also determined the main function modules for the system. The visual system was ultimately established with the DIV + CSS layout method combined with JSP, JavaScript, and some other computer programming languages based on the Java programming environment. Moreover, Struts, Spring, and Hibernate frameworks (SSH) were integrated in the system for the purpose of easy maintenance and expansion. To provide mapping service and spatial analysis functions, we selected ArcGIS for Server as the GIS server. We also used Oracle database and ESRI file geodatabase to store spatial data and non-spatial data in order to ensure the data security. In addition, the response data from the Web server are resampled to implement rapid visualization through the browser. The experimental successes indicate that this system can quickly respond to user's requests, and efficiently return the accurate processing results.

Construction of a multimedia application on public network

NASA Astrophysics Data System (ADS)

Liu, Jang; Wang, Chwan-Huei; Tseng, Ming-Yu; Hsiao, Sun-Lang; Luo, Wen-Hen; Tseng, Yung-Mean; Hung, Feng-Yue

1994-04-01

This paper describes our perception of current developments in networking, telecommunication and technology of multimedia. As such, we have taken a constructive view. From this standpoint, we devised a client server architecture that veils servers from their customers. It adheres to our conviction that network and location independence for serve access is a future trend. We have constructed an on-line KARAOKE on an existing CVS (Chinese Videotex System) to test the workability of this architecture and it works well. We are working on a prototype multimedia service network which is a miniature client server structure of our proposal. A specially designed protocol is described. Through this protocol, an one-to-many connection can be set up and to provide for multimedia applications, new connections can be established within a basic connection. So continuous media may have their own connections without being interrupted by other media, at least from the view of an application. We have advanced a constructive view which is not a framework itself. But it is tantamount to a framework, in building systems as assembly of methods, technics, designs, and ideas. This is what a framework does with more flexibility and availability.

The relationship between soil heterotrophic activity, soil dissolved organic carbon (DOC) leachate, and catchment-scale DOC export in headwater catchments

USGS Publications Warehouse

Brooks, P.D.; McKnight, Diane M.; Bencala, K.E.

1999-01-01

Dissolved organic carbon (DOC) from terrestrial sources forms the major component of the annual carbon budget in many headwater streams. In high-elevation catchments in the Rocky Mountains, DOC originates in the upper soil horizons and is flushed to the stream primarily during spring snowmelt. To identify controls on the size of the mobile soil DOC pool available to be transported during the annual melt event, we measured soil DOC production across a range of vegetation communities and soil types together with catchment DOC export in paired watersheds in Summit County, Colorado. Both surface water DOC concentrations and watershed DOC export were lower in areas where pyrite weathering resulted in lower soil pH. Similarly, the amount of DOC leached from organic soils was significantly smaller (p < 0.01) at sites having low soil pH. Scaling point source measurements of DOC production and leaching to the two basins and assuming only vegetated areas contribute to DOC production, we calculated that the amount of mobile DOC available to be leached to surface water during melt was 20.3 g C m−2 in the circumneutral basin and 17.8 g C m−2 in the catchment characterized by pyrite weathering. The significant (r2=0.91 and p < 0.05), linear relationship between over-winter CO2 flux and the amount of DOC leached from upper soil horizons during snowmelt suggests that the mechanism for the difference in production of mobile DOC was heterotrophic processing of soil carbon in snow-covered soil. Furthermore, this strong relationship between over-winter heterotrophic activity and the size of the mobile DOC pool present in a range of soil and vegetation types provides a likely mechanism for explaining the interannual variability of DOC export observed in high-elevation catchments.

Dissolved organic carbon in runoff and tile-drain water under corn and forage fertilized with hog manure.

PubMed

Royer, Isabelle; Angers, Denis A; Chantigny, Martin H; Simard, Régis R; Cluis, Daniel

2007-01-01

Dissolved organic carbon (DOC) export from soils can play a significant role in soil C cycling and in nutrient and pollutant transport. However, information about DOC losses from agricultural soils as influenced by management practices is scarce. We compared the effects of mineral fertilizer (MF) and liquid hog manure (LHM) applications on the concentration and molecular size of DOC released in runoff and tile-drain water under corn (Zea mays L.) and forage cropping systems. Runoff and tile-drain water samples were collected during a 2-mo period (October to December 1998) and DOC concentration was measured. Characterization of DOC was performed by tangential ultrafiltration with nominal cut-offs at 3 and 100 kDa. Mean concentration of DOC in runoff water (12.7 mg DOC L(-1)) was higher than in tile-drain water (6.5 mg DOC L(-1)). Incorporation of corn residues increased the DOC concentration by 6- to 17-fold in surface runoff, but this effect was short-lived. In runoff water, the relative size of the DOC molecules increased when corn residues and LHM were applied probably due to partial microbial breakdown of these organic materials and to a faster decomposition or preferential adsorption of the small molecules. The DOC concentration in tile-drain water was slightly higher under forage (7.5 mg DOC L(-1)) than under corn (5.4 mg DOC L(-1)) even though the application rates of LHM were higher in corn plots. We suggest that preferential flow facilitated the migration of DOC to tile drains in forage plots. In conclusion, incorporation of corn residues and LHM increased the concentration of DOC and the relative size of the molecules in surface runoff water, whereas DOC in tile-drain water was mostly influenced by the cropping system with relatively more DOC and larger molecules under forage than corn.

Chemical and carbon isotopic composition of dissolved organic carbon in a regional confined methanogenic aquifer

USGS Publications Warehouse

Aravena, R.; Wassenaar, L.I.; Spiker, E. C.

2004-01-01

This study demonstrates the advantage of a combined use of chemical and isotopic tools to understand the dissolved organic carbon (DOC) cycle in a regional confined methanogenic aquifer. DOC concentration and carbon isotopic data demonstrate that the soil zone is a primary carbon source of groundwater DOC in areas close to recharge zones. An in-situ DOC source linked to organic rich sediments present in the aquifer matrix is controlling the DOC pool in the central part of the groundwater flow system. DOC fractions, 13C-NMR on fulvic acids and 14C data on DOC and CH4 support the hypothesis that the in-situ DOC source is a terrestrial organic matter and discard the Ordovician bedrock as a source of DOC. ?? 2004 Taylor and Francis Ltd.

Federal Emergency Management Information System (FEMIS) system administration guide, version 1.4.5

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arp, J.A.; Burnett, R.A.; Carter, R.J.

The Federal Emergency Management Information Systems (FEMIS) is an emergency management planning and response tool that was developed by the Pacific Northwest National Laboratory (PNNL) under the direction of the US Army Chemical Biological Defense Command. The FEMIS System Administration Guide provides information necessary for the system administrator to maintain the FEMIS system. The FEMIS system is designed for a single Chemical Stockpile Emergency Preparedness Program (CSEPP) site that has multiple Emergency Operations Centers (EOCs). Each EOC has personal computers (PCs) that emergency planners and operations personnel use to do their jobs. These PCs are connected via a local areamore » network (LAN) to servers that provide EOC-wide services. Each EOC is interconnected to other EOCs via a Wide Area Network (WAN). Thus, FEMIS is an integrated software product that resides on client/server computer architecture. The main body of FEMIS software, referred to as the FEMIS Application Software, resides on the PC client(s) and is directly accessible to emergency management personnel. The remainder of the FEMIS software, referred to as the FEMIS Support Software, resides on the UNIX server. The Support Software provides the communication, data distribution, and notification functionality necessary to operate FEMIS in a networked, client/server environment. The UNIX server provides an Oracle relational database management system (RDBMS) services, ARC/INFO GIS (optional) capabilities, and basic file management services. PNNL developed utilities that reside on the server include the Notification Service, the Command Service that executes the evacuation model, and AutoRecovery. To operate FEMIS, the Application Software must have access to a site specific FEMIS emergency management database. Data that pertains to an individual EOC`s jurisdiction is stored on the EOC`s local server. Information that needs to be accessible to all EOCs is automatically distributed by the FEMIS database to the other EOCs at the site.« less

Designing of peptides with desired half-life in intestine-like environment.

PubMed

Sharma, Arun; Singla, Deepak; Rashid, Mamoon; Raghava, Gajendra Pal Singh

2014-08-20

In past, a number of peptides have been reported to possess highly diverse properties ranging from cell penetrating, tumor homing, anticancer, anti-hypertensive, antiviral to antimicrobials. Owing to their excellent specificity, low-toxicity, rich chemical diversity and availability from natural sources, FDA has successfully approved a number of peptide-based drugs and several are in various stages of drug development. Though peptides are proven good drug candidates, their usage is still hindered mainly because of their high susceptibility towards proteases degradation. We have developed an in silico method to predict the half-life of peptides in intestine-like environment and to design better peptides having optimized physicochemical properties and half-life. In this study, we have used 10mer (HL10) and 16mer (HL16) peptides dataset to develop prediction models for peptide half-life in intestine-like environment. First, SVM based models were developed on HL10 dataset which achieved maximum correlation R/R2 of 0.57/0.32, 0.68/0.46, and 0.69/0.47 using amino acid, dipeptide and tripeptide composition, respectively. Secondly, models developed on HL16 dataset showed maximum R/R2 of 0.91/0.82, 0.90/0.39, and 0.90/0.31 using amino acid, dipeptide and tripeptide composition, respectively. Furthermore, models that were developed on selected features, achieved a correlation (R) of 0.70 and 0.98 on HL10 and HL16 dataset, respectively. Preliminary analysis suggests the role of charged residue and amino acid size in peptide half-life/stability. Based on above models, we have developed a web server named HLP (Half Life Prediction), for predicting and designing peptides with desired half-life. The web server provides three facilities; i) half-life prediction, ii) physicochemical properties calculation and iii) designing mutant peptides. In summary, this study describes a web server 'HLP' that has been developed for assisting scientific community for predicting intestinal half-life of peptides and to design mutant peptides with better half-life and physicochemical properties. HLP models were trained using a dataset of peptides whose half-lives have been determined experimentally in crude intestinal proteases preparation. Thus, HLP server will help in designing peptides possessing the potential to be administered via oral route (http://www.imtech.res.in/raghava/hlp/).

Changes in Pore Water Quality After Peatland Restoration: Assessment of a Large-Scale, Replicated Before-After-Control-Impact Study in Finland

NASA Astrophysics Data System (ADS)

Menberu, Meseret Walle; Marttila, Hannu; Tahvanainen, Teemu; Kotiaho, Janne S.; Hokkanen, Reijo; Kløve, Bjørn; Ronkanen, Anna-Kaisa

2017-10-01

Drainage is known to affect peatland natural hydrology and water quality, but peatland restoration is considered to ameliorate peatland degradation. Using a replicated BACIPS (Before-After-Control-Impact Paired Series) design, we investigated 24 peatlands, all drained for forestry and subsequently restored, and 19 pristine control boreal peatlands with high temporal and spatial resolution data on hydroclimate and pore water quality. In drained conditions, total nitrogen (Ntot), total phosphorus (Ptot), and dissolved organic carbon (DOC) in pore water were several-fold higher than observed at pristine control sites, highlighting the impacts of long-term drainage on pore water quality. In general, pore water DOC and Ntot decreased after restoration measures but still remained significantly higher than at pristine control sites, indicating long time lags in restoration effects. Different peatland classes and trophic levels (vegetation gradient) responded differently to restoration, primarily due to altered hydrology and varying acidity levels. Sites that were hydrologically overrestored (inundated) showed higher Ptot, Ntot, and DOC than well-restored or insufficiently restored sites, indicating the need to optimize natural-like hydrological regimes when restoring peatlands drained for forestry. Rich fens (median pH 6.2-6.6) showed lower pore water Ptot, Ntot, and DOC than intermediate and poor peats (pH 4.0-4.6) both before and after restoration. Nutrients and DOC in pore water increased in the first year postrestoration but decreased thereafter. The most important variables related to pore water quality were trophic level, peatland class, water table level, and soil and air temperature.

Beyond satisfaction: using the Dynamics of Care assessment to better understand patients' experiences in care.

PubMed

Rapkin, Bruce; Weiss, Elisa; Chhabra, Rosy; Ryniker, Laura; Patel, Shilpa; Carness, Jason; Adsuar, Roberto; Kahalas, Wendy; Delemarter, Carol; Feldman, Ira; Delorenzo, Judy; Tanner, Ellen

2008-03-10

Patient perceptions of and satisfaction with care have become important indicators of the quality of services and the relationship of services to treatment outcomes. However, assessment of these indicators continues to be plagued by measurement problems, particularly the lack of variance in satisfaction data. In this article, we present a new approach to better capture patient perceptions of experiences in care, the Dynamics of Care (DoC) assessment. It is an in-depth approach to defining and assessing patients' perspectives at different junctures in care, including their decisions about whether and where to seek care, the barriers encountered, and the treatments and services received. The purpose of this article is to describe, validate, and discuss the benefits and limitations of the DoC, which was administered as part of a longitudinal study to evaluate the New York State HIV Special Needs Plan (SNP), a Medicaid managed care model for people living with HIV/AIDS. Data are from 426 study respondents across two time points. The results demonstrate the validity and value of the DoC. Help seeking decisions and satisfaction with care appear to be situation-specific, rather than person-specific. However, barriers to care appear to be more cross-situational for respondents, and may be associated with clients' living situations or care arrangements. Inventories in this assessment that were designed to identify potential deterrents to help seeking and difficulties encountered in care demonstrated clear principal component structures, and helped to explain satisfaction with care. The problem resolution index was found to be independent from satisfaction with care and the data were more normally distributed. DoC data were also associated with subsequent utilization and change in quality of life. The DoC was designed to be a flexible, integrated measure to determine individuals' salient service needs, help seeking and experiences in care. One of the many strengths of the assessment is its focus on specific problems in context, thus providing a more sensitive and informative way to understand processes in care from the patient's perspective. This approach can be used to direct new programs and resources to the patients and situations that require them.

Assessing contribution of DOC from sediments to a drinking-water reservoir using optical profiling

USGS Publications Warehouse

Downing, Bryan D.; Bergamaschi, Brian A.; Evans, David G.; Boss, Emmanuel

2008-01-01

Understanding the sources of dissolved organic carbon (DOC) in drinking-water reservoirs is an important management issue because DOC may form disinfection by-products, interfere with disinfection, or increase treatment costs. DOC may be derived from a host of sources-algal production of DOC in the reservoir, marginal production of DOC from mucks and vascular plants at the margins, and sediments in the reservoir. The purpose of this study was to assess if release of DOC from reservoir sediments containing ferric chloride coagulant was a significant source of DOC to the reservoir. We examined the source-specific contributions of DOC using a profiling system to measure the in situ distribution of optical properties of absorption and fluorescence at various locations in the reservoir. Vertical optical profiles were coupled with discrete water samples measured in the laboratory for DOC concentration and optical properties: absorption spectra and excitation emission matrix spectra (EEMs). Modeling the in situ optical data permitted estimation of the bulk DOC profile in the reservoir as well as separation into source-specific contributions. Analysis of the source-specific profiles and their associated optical characteristics indicated that the sedimentary source of DOC to the reservoir is significant and that this DOC is labile in the reservoir. We conclude that optical profiling is a useful technique for understanding complex biogeochemical processes in a reservoir.

Health information technology: use it well, or don't! Findings from the use of a decision support system for breast cancer management.

PubMed

Bouaud, Jacques; Blaszka-Jaulerry, Brigitte; Zelek, Laurent; Spano, Jean-Philippe; Lefranc, Jean-Pierre; Cojean-Zelek, Isabelle; Durieux, Axel; Tournigand, Christophe; Rousseau, Alexandra; Séroussi, Brigitte

2014-01-01

The potential of health information technology is hampered by new types of errors which impact is not totally assessed. OncoDoc2 is a decision support system designed to support treatment decisions of multidisciplinary meetings (MDMs) for breast cancer patients. We evaluated how the way the system was used had an impact on MDM decision compliance with clinical practice guidelines. We distinguished "correct navigations" (N+), "incorrect navigations" (N-), and "missing navigations" (N0), according to the quality of data entry when using OncoDoc2. We collected 557 MDM decisions from three hospitals of Paris area (France) where OncoDoc2 was routinely used. We observed 33.9% N+, 36.8% N-, and 29.3% N0. The compliance rate was significantly different according to the quality of navigations, 94.2%, 80.0%, and 90.2% for N+, N-, and N0 respectively. Surprinsingly, it was better not to use the system (N0) than to use it improperly (N-).

[Design and Implementation of a Mobile Operating Room Information Management System Based on Electronic Medical Record].

PubMed

Liu, Baozhen; Liu, Zhiguo; Wang, Xianwen

2015-06-01

A mobile operating room information management system with electronic medical record (EMR) is designed to improve work efficiency and to enhance the patient information sharing. In the operating room, this system acquires the information from various medical devices through the Client/Server (C/S) pattern, and automatically generates XML-based EMR. Outside the operating room, this system provides information access service by using the Browser/Server (B/S) pattern. Software test shows that this system can correctly collect medical information from equipment and clearly display the real-time waveform. By achieving surgery records with higher quality and sharing the information among mobile medical units, this system can effectively reduce doctors' workload and promote the information construction of the field hospital.

Prokaryotic Contig Annotation Pipeline Server: Web Application for a Prokaryotic Genome Annotation Pipeline Based on the Shiny App Package.

PubMed

Park, Byeonghyeok; Baek, Min-Jeong; Min, Byoungnam; Choi, In-Geol

2017-09-01

Genome annotation is a primary step in genomic research. To establish a light and portable prokaryotic genome annotation pipeline for use in individual laboratories, we developed a Shiny app package designated as "P-CAPS" (Prokaryotic Contig Annotation Pipeline Server). The package is composed of R and Python scripts that integrate publicly available annotation programs into a server application. P-CAPS is not only a browser-based interactive application but also a distributable Shiny app package that can be installed on any personal computer. The final annotation is provided in various standard formats and is summarized in an R markdown document. Annotation can be visualized and examined with a public genome browser. A benchmark test showed that the annotation quality and completeness of P-CAPS were reliable and compatible with those of currently available public pipelines.

The design and implementation of web mining in web sites security

NASA Astrophysics Data System (ADS)

Li, Jian; Zhang, Guo-Yin; Gu, Guo-Chang; Li, Jian-Li

2003-06-01

The backdoor or information leak of Web servers can be detected by using Web Mining techniques on some abnormal Web log and Web application log data. The security of Web servers can be enhanced and the damage of illegal access can be avoided. Firstly, the system for discovering the patterns of information leakages in CGI scripts from Web log data was proposed. Secondly, those patterns for system administrators to modify their codes and enhance their Web site security were provided. The following aspects were described: one is to combine web application log with web log to extract more information, so web data mining could be used to mine web log for discovering the information that firewall and Information Detection System cannot find. Another approach is to propose an operation module of web site to enhance Web site security. In cluster server session, Density-Based Clustering technique is used to reduce resource cost and obtain better efficiency.

Dissolved Organic Carbon in the Yukon, Tanana and Porcupine Rivers, Alaska

NASA Astrophysics Data System (ADS)

Aiken, G. R.; Striegl, R. G.; Wickland, K. P.; Dornblaser, M. M.; Raymond, P. A.

2006-12-01

The spatial and temporal variability of dissolved organic carbon (DOC) in the Yukon River (YR) and two major tributaries, the Porcupine River (PR), a black water river draining a watershed almost entirely underlain by permafrost, and the Tanana River (TR), a glacial dominated river, are being studied to better define processes controlling DOC in these systems. Five-year seasonal averages indicate DOC concentrations follow the discharge hydrograph, with highest daily and seasonal flux occurring during spring in YR and PR and during summer-autumn in TR. Largest DOC concentrations and specific UV absorption (SUVA) values, a measure of aromatic carbon content of the DOC and an indicator of DOC source, occurred at all locations during spring snowmelt. Lowest DOC concentration and SUVA occurred during low-flow in winter due to greatly reduced contributions of soil organic matter and to relatively greater influences of ground water. While all sites had comparable DOC concentration during winter, DOC concentration was greatest at PR during spring and summer-autumn, whereas TR had the lowest average DOC and SUVA values. Within the YR, average DOC concentration and SUVA values in spring and summer-autumn increase downriver due to contributions from organic carbon rich tributaries, such as PR, that increase in number and significance as the river flows through Alaska. Most the DOC in each system was comprised of hydrophobic organic acids (HPOA) derived from terrestrial vegetation. During winter, the hydrophilic fraction, determined to be the most biodegradable, was a larger percentage of the DOC than during spring-autumn. During spring, HPOA concentration and SUVA increased significantly at all sites, suggesting that most DOC in spring is derived from terrestrial organic matter that was frozen on the land surface over winter. During spring-autumn, PR had the largest concentration of HPOA and TR had the least. Like DOC concentration, HPOA concentration and SUVA increased down river. 14C-DOC values correspond to radiocarbon ages of modern (PR), 282 (TR), and 328 (YR) yrs B.P, indicating the presence of some aged DOC in YR and TR. Comparison of the chemical character of DOC from sites along the YR suggests that most DOC is transported from its source to the Bering Sea with little within river chemical or biological alteration, a result supported by laboratory biodegradation experiments.

Relationship between the colored dissolved organic matter and dissolved organic carbon and the application on remote sensing in East China Sea

NASA Astrophysics Data System (ADS)

Qiong, Liu; Pan, Delu; Huang, Haiqing; Lu, Jianxin; Zhu, Qiankun

2011-11-01

A cruise was conducted in the East China Sea (ECS) in autumn 2010 to collect Dissolved Organic Carbon (DOC) and Colored Dissolved Organic Matter (CDOM) samples. The distribution of DOC mainly controlled by the hydrography since the relationship between DOC and salinity was significant in both East China Sea. The biological activity had a significant influence on the concentration of DOC with a close correlation between DOC and Chl a. The absorption coefficient of CDOM (a355) decreased with the salinity increasing in the shelf of East China Sea (R2=0.9045). CDOM and DOC were significantly correlated in ECS where DOC distribution was dominated largely by the Changjiang diluted water. Based on the relationship of CDOM and DOC, we estimated the DOC concentration of the surface in ECS from satellite-derived CDOM images. Some deviations induced by the biological effect and related marine DOC accumulations were discussed.

Overview of a simple model describing variation of dissolved organic carbon in an upland catchment

USGS Publications Warehouse

Boyer, Elizabeth W.; Hornberger, George M.; Bencala, Kenneth E.; McKnight, Diane M.

1996-01-01

Hydrological mechanisms controlling the variation of dissolved organic carbon (DOC) were investigated in the Deer Creek catchment located near Montezuma, CO. Patterns of DOC in streamflow suggested that increased flows through the upper soil horizon during snowmelt are responsible for flushing this DOC-enriched interstitial water to the streams. We examined possible hydrological mechanisms to explain the observed variability of DOC in Deer Creek by first simulating the hydrological response of the catchment using TOPMODEL and then routing the predicted flows through a simple model that accounted for temporal changes in DOC. Conceptually the DOC model can be taken to represent a terrestrial (soil) reservoir in which DOC builds up during low flow periods and is flushed out when infiltrating meltwaters cause the water table to rise into this “reservoir”. Concentrations of DOC measured in the upper soil and in streamflow were compared to model simulations. The simulated DOC response provides a reasonable reproduction of the observed dynamics of DOC in the stream at Deer Creek.

A simple tool for neuroimaging data sharing

PubMed Central

Haselgrove, Christian; Poline, Jean-Baptiste; Kennedy, David N.

2014-01-01

Data sharing is becoming increasingly common, but despite encouragement and facilitation by funding agencies, journals, and some research efforts, most neuroimaging data acquired today is still not shared due to political, financial, social, and technical barriers to sharing data that remain. In particular, technical solutions are few for researchers that are not a part of larger efforts with dedicated sharing infrastructures, and social barriers such as the time commitment required to share can keep data from becoming publicly available. We present a system for sharing neuroimaging data, designed to be simple to use and to provide benefit to the data provider. The system consists of a server at the International Neuroinformatics Coordinating Facility (INCF) and user tools for uploading data to the server. The primary design principle for the user tools is ease of use: the user identifies a directory containing Digital Imaging and Communications in Medicine (DICOM) data, provides their INCF Portal authentication, and provides identifiers for the subject and imaging session. The user tool anonymizes the data and sends it to the server. The server then runs quality control routines on the data, and the data and the quality control reports are made public. The user retains control of the data and may change the sharing policy as they need. The result is that in a few minutes of the user’s time, DICOM data can be anonymized and made publicly available, and an initial quality control assessment can be performed on the data. The system is currently functional, and user tools and access to the public image database are available at http://xnat.incf.org/. PMID:24904398

Decentralized session initiation protocol solution in ad hoc networks

NASA Astrophysics Data System (ADS)

Han, Lu; Jin, Zhigang; Shu, Yantai; Dong, Linfang

2006-10-01

With the fast development of ad hoc networks, SIP has attracted more and more attention in multimedia service. This paper proposes a new architecture to provide SIP service for ad hoc users, although there is no centralized SIP server deployed. In this solution, we provide the SIP service by the introduction of two nodes: Designated SIP Server (DS) and its Backup Server (BDS). The nodes of ad hoc network designate DS and BDS when they join the session nodes set and when some pre-defined events occur. A new sip message type called REGISTRAR is presented so nodes can send others REGISTRAR message to declare they want to be DS. According to the IP information taken in the message, an algorithm works like the election of DR and BDR in OSPF protocol is used to vote DS and BDS SIP servers. Naturally, the DS will be replaced by BDS when the DS is down for predicable or unpredictable reasons. To facilitate this, the DS should register to the BDS and transfer a backup of the SIP users' database. Considering the possibility DS or BDS may abruptly go down, a special policy is given. When there is no DS and BDS, a new election procedure is triggered just like the startup phase. The paper also describes how SIP works normally in the decentralized model as well as the evaluation of its performance. All sessions based on SIP in ad hoc such as DS voting have been tested in the real experiments within a 500m*500m square area where about 30 random nodes are placed.

Expitope: a web server for epitope expression.

PubMed

Haase, Kerstin; Raffegerst, Silke; Schendel, Dolores J; Frishman, Dmitrij

2015-06-01

Adoptive T cell therapies based on introduction of new T cell receptors (TCRs) into patient recipient T cells is a promising new treatment for various kinds of cancers. A major challenge, however, is the choice of target antigens. If an engineered TCR can cross-react with self-antigens in healthy tissue, the side-effects can be devastating. We present the first web server for assessing epitope sharing when designing new potential lead targets. We enable the users to find all known proteins containing their peptide of interest. The web server returns not only exact matches, but also approximate ones, allowing a number of mismatches of the users choice. For the identified candidate proteins the expression values in various healthy tissues, representing all vital human organs, are extracted from RNA Sequencing (RNA-Seq) data as well as from some cancer tissues as control. All results are returned to the user sorted by a score, which is calculated using well-established methods and tools for immunological predictions. It depends on the probability that the epitope is created by proteasomal cleavage and its affinities to the transporter associated with antigen processing and the major histocompatibility complex class I alleles. With this framework, we hope to provide a helpful tool to exclude potential cross-reactivity in the early stage of TCR selection for use in design of adoptive T cell immunotherapy. The Expitope web server can be accessed via http://webclu.bio.wzw.tum.de/expitope. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Assessment of risk for asthma initiation and cancer and heart disease deaths among patrons and servers due to secondhand smoke exposure in restaurants and bars

PubMed Central

Liu, Ruiling; Bohac, David L; Gundel, Lara A; Hewett, Martha J; Apte, Michael G; Hammond, S Katharine

2014-01-01

Background Despite efforts to reduce exposure to secondhand smoke (SHS), only 5% of the world's population enjoy smoke-free restaurants and bars. Methods Lifetime excess risk (LER) of cancer death, ischaemic heart disease (IHD) death and asthma initiation among non-smoking restaurant and bar servers and patrons in Minnesota and the US were estimated using weighted field measurements of SHS constituents in Minnesota, existing data on tobacco use and multiple dose-response models. Results A continuous approach estimated a LER of lung cancer death (LCD) of 18×10−6(95% CI 13 to 23×10−6) for patrons visiting only designated non-smoking sections, 80×10−6(95% CI 66 to 95×10−6) for patrons visiting only smoking venues/sections and 802×10−6(95% CI 658 to 936×10−6) for servers in smoking-permitted venues. An attributable-risk (exposed/non-exposed) approach estimated a similar LER of LCD, a LER of IHD death about 10−2 for non-smokers with average SHS exposure from all sources and a LER of asthma initiation about 5% for servers with SHS exposure at work only. These risks correspond to 214 LCDs and 3001 IHD deaths among the general non-smoking population and 1420 new asthma cases among non-smoking servers in the US each year due to SHS exposure in restaurants and bars alone. Conclusions Health risks for patrons and servers from SHS exposure in restaurants and bars alone are well above the acceptable level. Restaurants and bars should be a priority for governments’ effort to create smoke-free environments and should not be exempt from smoking bans. PMID:23407112

Photochemical alteration of organic carbon draining permafrost soils shifts microbial metabolic pathways and stimulates respiration.

PubMed

Ward, Collin P; Nalven, Sarah G; Crump, Byron C; Kling, George W; Cory, Rose M

2017-10-03

In sunlit waters, photochemical alteration of dissolved organic carbon (DOC) impacts the microbial respiration of DOC to CO 2 . This coupled photochemical and biological degradation of DOC is especially critical for carbon budgets in the Arctic, where thawing permafrost soils increase opportunities for DOC oxidation to CO 2 in surface waters, thereby reinforcing global warming. Here we show how and why sunlight exposure impacts microbial respiration of DOC draining permafrost soils. Sunlight significantly increases or decreases microbial respiration of DOC depending on whether photo-alteration produces or removes molecules that native microbial communities used prior to light exposure. Using high-resolution chemical and microbial approaches, we show that rates of DOC processing by microbes are likely governed by a combination of the abundance and lability of DOC exported from land to water and produced by photochemical processes, and the capacity and timescale that microbial communities have to adapt to metabolize photo-altered DOC.The role of dissolved organic carbon (DOC) photo-alteration in the microbial respiration of DOC to CO 2 is unclear. Here, the authors show that the impact of this mechanism depends on whether photo-alteration of DOC produces or removes molecules used by native microbial communities prior to light exposure.

Naval Research Laboratory Ecological -- Photochemical -- Bio-optical--Numerical Experiment (Neptune) Version 1: A Portable, Flexible Modeling Environment Designed to Resolve Time-dependent Feedbacks Between Upper Ocean Ecology, Photochemistry, and Optics

DTIC Science & Technology

2007-02-21

dependent upon the carbon gross growth efficiency ( GGE ) and the C:N:P ratio of the organic substrate. This calculation and its structural...product of the temperature adjusted maximum gross carbon assimilation rate, the carbon gross growth efficiency ( GGE ), and the uptake kinetics for DOC...substrate: max T 4 [ ]( ) [ ]Cb b DOCg g GGE n DOC ⎛ ⎞ = ⎜ ⎟+⎝ ⎠ (21) and ( )( 30)max T m30 m30min[ , ]Kt Tb b bg g g e −= (22) To

Photooxidation and Microbial Processing of Ancient and Modern Dissolved Organic Carbon in the Kolyma River, Siberia.

NASA Astrophysics Data System (ADS)

Behnke, M. I.; Mann, P. J.; Schade, J. D.; Spawn, S.; Zimov, N.

2015-12-01

Permafrost soils in northern high latitudes store large quantities of organic carbon that have remained frozen for thousands of years. As global temperatures increase, permafrost deposits have begun to thaw, releasing previously stored ancient carbon to streams and rivers in the form of dissolved organic carbon (DOC). Newly mobilized DOC is then subjected to processing by photooxidation and microbial metabolism. Permafrost-derived DOC is highly bioavailable directly upon release relative to modern DOC derived from plants and surface active layer soils. Our objectives were to assess the interaction of photodegradation and microbial processing, and to quantify any light priming effect on the microbial consumption of both ancient and modern sourced DOC pools. We exposed sterilized mixtures of ancient and modern DOC to ambient sunlight for six days, and then inoculated mixtures (0, 1, 10, 25, 50 & 100% ancient DOC) with microbes from both modern and ancient water sources. After inoculation, samples were incubated in the dark for five days. We measured biological oxygen demand, changes in absorbance, and DOC concentrations to quantify microbial consumption of DOC and identify shifts in DOC composition and biolability. We found evidence of photobleaching during irradiation (decreasing S275-295, increasing slope ratio, and decreasing SUVA254). Once inoculated, mixtures with more ancient DOC showed initially increased microbial respiration compared to mixtures with primarily modern DOC. During the first 24 hours, the light-exposed mixture with 50% ancient DOC showed 47.6% more oxygen consumption than did the dark 50% mixture, while the purely modern DOC showed 11.5% greater oxygen consumption after light exposure. After 5 days, the modern light priming was comparable to the 50% mixture (31.2% compared to 20.5%, respectively). Our results indicate that natural photoexposure of both modern and newly released DOC increases microbial processing rates over non photo-exposed DOC.

PELE web server: atomistic study of biomolecular systems at your fingertips.

PubMed

Madadkar-Sobhani, Armin; Guallar, Victor

2013-07-01

PELE, Protein Energy Landscape Exploration, our novel technology based on protein structure prediction algorithms and a Monte Carlo sampling, is capable of modelling the all-atom protein-ligand dynamical interactions in an efficient and fast manner, with two orders of magnitude reduced computational cost when compared with traditional molecular dynamics techniques. PELE's heuristic approach generates trial moves based on protein and ligand perturbations followed by side chain sampling and global/local minimization. The collection of accepted steps forms a stochastic trajectory. Furthermore, several processors may be run in parallel towards a collective goal or defining several independent trajectories; the whole procedure has been parallelized using the Message Passing Interface. Here, we introduce the PELE web server, designed to make the whole process of running simulations easier and more practical by minimizing input file demand, providing user-friendly interface and producing abstract outputs (e.g. interactive graphs and tables). The web server has been implemented in C++ using Wt (http://www.webtoolkit.eu) and MySQL (http://www.mysql.com). The PELE web server, accessible at http://pele.bsc.es, is free and open to all users with no login requirement.

Development of a web geoservices platform for School of Environmental Sciences, Mahatma Gandhi University, Kerala, India

NASA Astrophysics Data System (ADS)

Satheendran, S.; John, C. M.; Fasalul, F. K.; Aanisa, K. M.

2014-11-01

Web geoservices is the obvious graduation of Geographic Information System in a distributed environment through a simple browser. It enables organizations to share domain-specific rich and dynamic spatial information over the web. The present study attempted to design and develop a web enabled GIS application for the School of Environmental Sciences, Mahatma Gandhi University, Kottayam, Kerala, India to publish various geographical databases to the public through its website. The development of this project is based upon the open source tools and techniques. The output portal site is platform independent. The premier webgis frame work `Geomoose' is utilized. Apache server is used as the Web Server and the UMN Map Server is used as the map server for this project. It provides various customised tools to query the geographical database in different ways and search for various facilities in the geographical area like banks, attractive places, hospitals, hotels etc. The portal site was tested with the output geographical database of 2 projects of the School such as 1) the Tourism Information System for the Malabar region of Kerala State consisting of 5 northern districts 2) the geoenvironmental appraisal of the Athirappilly Hydroelectric Project covering the entire Chalakkudy river basin.

Quality of service policy control in virtual private networks

NASA Astrophysics Data System (ADS)

Yu, Yiqing; Wang, Hongbin; Zhou, Zhi; Zhou, Dongru

2004-04-01

This paper studies the QoS of VPN in an environment where the public network prices connection-oriented services based on source, destination and grade of service, and advertises these prices to its VPN customers (users). As different QoS technologies can produce different QoS, there are according different traffic classification rules and priority rules. The internet service provider (ISP) may need to build complex mechanisms separately for each node. In order to reduce the burden of network configuration, we need to design policy control technologies. We considers mainly directory server, policy server, policy manager and policy enforcers. Policy decision point (PDP) decide its control according to policy rules. In network, policy enforce point (PEP) decide its network controlled unit. For InterServ and DiffServ, we will adopt different policy control methods as following: (1) In InterServ, traffic uses resource reservation protocol (RSVP) to guarantee the network resource. (2) In DiffServ, policy server controls the DiffServ code points and per hop behavior (PHB), its PDP distributes information to each network node. Policy server will function as following: information searching; decision mechanism; decision delivering; auto-configuration. In order to prove the effectiveness of QoS policy control, we make the corrective simulation.

Removal of terrestrial DOC in aquatic ecosystems of a temperate river network

USGS Publications Warehouse

Wollheim, W.M.; Stewart, R. J.; Aiken, George R.; Butler, Kenna D.; Morse, Nathaniel B.; Salisbury, J.

2015-01-01

Surface waters play a potentially important role in the global carbon balance. Dissolved organic carbon (DOC) fluxes are a major transfer of terrestrial carbon to river systems, and the fate of DOC in aquatic systems is poorly constrained. We used a unique combination of spatially distributed sampling of three DOC fractions throughout a river network and modeling to quantify the net removal of terrestrial DOC during a summer base flow period. We found that aquatic reactivity of terrestrial DOC leading to net loss is low, closer to conservative chloride than to reactive nitrogen. Net removal occurred mainly from the hydrophobic organic acid fraction, while hydrophilic and transphilic acids showed no net change, indicating that partitioning of bulk DOC into different fractions is critical for understanding terrestrial DOC removal. These findings suggest that river systems may have only a modest ability to alter the amounts of terrestrial DOC delivered to coastal zones.

Long-term decomposition of DOC from experimental diatom blooms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fry, B.; Hopkinson, C.S. Jr.; Nolin, A.

1996-09-01

Decomposition of {sup 13}C-labeled dissolved organic carbon (DOC) produced in two marine diatom blooms was followed for 2.5 yr with large volume (20 liter) incubations performed in the dark. The {sup 13}C tracer was used to partition decomposition dynamics of the fresh diatom-derived DOC and the turnover of background DOC from Woods Hole Harbor. DOC from Woods Hole harbor proved largely refractory, with DOC concentrations falling from 122 to {approximately} 100 {mu}M C in 2.5 yr. DOC from the diatom blooms was more labile, but was also incompletely mineralized, with 25-35% remaining after 2.5 yr. Neither nutrients nor labile carbonmore » (dextrose) added at 1.5 yr significantly stimulated DOC mineralization. The experiments indicate that DOC produced in short-term blooms can be surprisingly resistant to microbial attack. 21 refs., 1 fig., 1 tab.« less

Acid-induced changes in DOC quality in an experimental whole-lake manipulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Donahue, W.F.; Schindler, D.W.; Page, S.J.

1998-10-01

Fluorescence analyses of archived water samples were used to typify dissolved organic carbon (DOC) quality in experimentally acidified lakes and reference lakes at the Experimental Lakes Area, in northwestern Ontario. Carbon-specific DOC fluorescence (CSF) during peak acidification was 40--50% of that for a high-DOC reference lake and similar to a low-DOC reference lake. Reference lakes showed similar but smaller decreases in CSF during several years of prolonged drought in the late 1980s. During the 1990s, recovery from acidification resulted in increased CSF, whereas reference lakes remained unchanged during the same time period. In addition to causing decreased [DOC], acidification causesmore » changes in fluorescence-peak geometry that indicate a switch in DOC quality from allochthonous to autochthonous-like during acidification. The acid-induced change in DOC quality was likely due to increased chemical oxidation or precipitation of the UV-absorbent aromatic portions of allochthonous DOC molecules, leaving more UV-transparent aliphatic chains. The change in the nature of DOC following acidification and drought may have an important role in physical, biological, and chemical processes within these lakes. With recovery from acidification, DOC quality has also recovered.« less

Response Characteristics of Dissolved Organic Carbon Flushing in a Subarctic Alpine Catchment

NASA Astrophysics Data System (ADS)

Carey, S. K.

2002-12-01

Dissolved organic carbon (DOC) is an important part of ecosystem-scale carbon balances and in the transport of contaminants as it interacts with other dissolved substances including trace metals. It also can be used as a surrogate hydrological tracer in permafrost regions as near-surface waters are often DOC enriched due to the presence of thick organic soils. In a small subarctic alpine catchment within the Wolf Creek Research Basin, Yukon, Canada, DOC was studied in the summer of 2001 and spring of 2002 to determine the role frost (both permanent and seasonal), snowmelt and summer storms on DOC flushing. Peak DOC concentrations occurred during the snowmelt period, approximately one week prior to peak discharge. However, peak discharge took place several weeks after snow on south facing exposures had melted. Within the hillslopes, DOC concentrations were three to five times greater in wells underlain with permafrost compared with seasonal frost. Groundwater DOC concentrations declined during snowmelt, yet remained at levels above the streamflow. After peaking, streamflow DOC concentrations declined exponentially suggesting a simple flushing mechanism, however there did not appear to be a relation between DOC and topographic position. Following melt, permafrost underlain slopes had near-surface water tables and retained elevated levels of DOC, whereas slopes without permafrost had rapidly declining water tables at upslope locations with low DOC concentrations at all positions except near-stream riparian zones. The influence of summer rainstorms on DOC was monitored on three occasions. In each case DOC peaked on the ascending limb of the runoff hydrograph and declined exponentially on the receding limb and hysteretic behavior occurred between discharge and DOC during all events. Patterns of DOC within the hillslopes and streams suggest that runoff from permafrost-underlain slopes control DOC flushing within the stream during both snowmelt and summer periods. This flushing mechanism conforms with conceptual models of runoff generation in discontinuous permafrost catchments whereby water tables within permafrost-underlain slopes rise into porous organic-layers, whereupon DOC is leached into the water and rapidly conveyed to the stream.

Does wildfire cause cascading effects on aquatic C cycling? A study of soil, well and lake DOC composition and bio/photolability

NASA Astrophysics Data System (ADS)

Olefeldt, D.; Turetsky, M. R.; Devito, K. J.; Blodau, C.

2012-12-01

In May 2011 a wildfire broke out north of Utikuma Lake in central Alberta, Canada, which eventually burned an area of ~880 km2. Wildfire alters soil properties, potentially altering the chemical composition of terrestrial DOC that reaches downstream aquatic environments. In order to study the potential effects of wildfire on lake carbon cycling, we sampled and incubated DOC from soil samples (n=52), wells (n=35) and lakes (n=32) from within and outside the recent fire perimeter. We incubated the DOC samples under both dark and UV conditions to assess both bio- and photolability, and followed DOC composition throughout the incubations by measuring DOC absorbing and fluorescing properties. A strong effect of wildfire was found among DOC samples leached from surface peatland and upland soils - with fire yielding increased DOC aromaticity associated with decreased biodegradability but also increased photolability. Parallel factor analysis of fluorescence matrices revealed distinct regions that were associated with DOC leached from charred soils, potentially linked to their lower biodegradability. Dark and UV conditions gave rise to very different trajectories of changes to DOC composition throughout incubations, with preferential losses of non-aromatic DOC under dark conditions and aromatic DOC under UV conditions. The DOC composition index that was found to best predict both DOC bio- and photolability was specific UV absorbance, which is also a very simple and quick index to measure. For lakes, we found that the primary influences on DOC composition and bio-/photolability was linked to lake size and hydrogeological setting (whether located on a lacustrine clay plain or in a moraine/outwash region) that controls groundwater influence and the hydrological connectivity to adjacent peatlands. Further analysis of well and lake water incubations will be used to detect whether wildfire can be detected to have a subtle secondary effect on DOC composition and lability or if the potential for cascading effects on lake C cycling due to altered soil DOC sources remain unrealized in the study region.

Hardware Assisted Stealthy Diversity (CHECKMATE)

DTIC Science & Technology

2013-09-01

applicable across multiple architectures. Figure 29 shows an example an attack against an interpreted environment with a Java executable. CHECKMATE can...Architectures ARM PPCx86 Java VM Java VMJava VM Java Executable Attack APPROVED FOR PUBLIC RELEASE; DISTRIBUTION UNLIMITED 33 a user executes “/usr/bin/wget...Server 1 - Administration Server 2 – Database ( mySQL ) Server 3 – Web server (Mongoose) Server 4 – File server (SSH) Server 5 – Email server

14 CFR 16.17 - Computation of time.

Code of Federal Regulations, 2014 CFR

2014-01-01

... applicable statute. (a) The date of an act, event, or default, after which a designated time period begins to... certified mail, 5 days shall be added to the prescribed period. [Doc. No. 27783, 61 FR 54004, October 16...

75 FR 54297 - Tri-County Advisory Committee Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2010-09-07

.... ADDRESSES: The meeting will be held at the USDA building located 1002 Hollenback Road, Deer Lodge, Montana.... Dated: August 24, 2010. David R. Myers, Designated Federal Official. [FR Doc. 2010-22113 Filed 9-3-10; 8...

Propulsion Study for Small Transport Aircraft Technology (STAT)

NASA Technical Reports Server (NTRS)

Gill, J. C.; Earle, R. V.; Staton, D. V.; Stolp, P. C.; Huelster, D. S.; Zolezzi, B. A.

1980-01-01

Propulsion requirements were determined for 0.5 and 0.7 Mach aircraft. Sensitivity studies were conducted on both these aircraft to determine parametrically the influence of propulsion characteristics on aircraft size and direct operating cost (DOC). Candidate technology elements and design features were identified and parametric studies conducted to select the STAT advanced engine cycle. Trade off studies were conducted to determine those advanced technologies and design features that would offer a reduction in DOC for operation of the STAT engines. These features were incorporated in the two STAT engines. A benefit assessment was conducted comparing the STAT engines to current technology engines of the same power and to 1985 derivatives of the current technology engines. Research and development programs were recommended as part of an overall technology development plan to ensure that full commercial development of the STAT engines could be initiated in 1988.

The Four Levels of Web Site Development Expertise.

ERIC Educational Resources Information Center

Ingram, Albert L.

2000-01-01

Discusses the design of Web pages and sites and proposes a four-level model of Web development expertise that can serve as a curriculum overview or as a plan for an individual's professional development. Highlights include page design, media use, client-side processing, server-side processing, and site structure. (LRW)

Conducting and Supporting a Goal-Based Scenario Learning Environment.

ERIC Educational Resources Information Center

Montgomery, Joel; And Others

1994-01-01

Discussion of goal-based scenario (GBS) learning environments focuses on a training module designed to prepare consultants with new skills in managing clients, designing user-friendly graphical computer interfaces, and working in a client/server computing environment. Transforming the environment from teaching focused to learning focused is…

The Air Force Academy Instructor Workstation (IWS): I. Design and Implementation.

ERIC Educational Resources Information Center

Gist, Thomas E.; And Others

1989-01-01

Discusses the design and implementation of a computer-controlled instructor workstation (IWS), including a videodisc player, that was developed at the Air Force Academy. System capabilities for lesson presentation, administrative functions, an authoring system, and a file server for courseware maintenance are explained. (seven references) (LRW)

Designing a Virtual-Reality-Based, Gamelike Math Learning Environment

ERIC Educational Resources Information Center

Xu, Xinhao; Ke, Fengfeng

2016-01-01

This exploratory study examined the design issues related to a virtual-reality-based, gamelike learning environment (VRGLE) developed via OpenSimulator, an open-source virtual reality server. The researchers collected qualitative data to examine the VRGLE's usability, playability, and content integration for math learning. They found it important…

DOE Office of Scientific and Technical Information (OSTI.GOV)

The system is developed to collect, process, store and present the information provided by the radio frequency identification (RFID) devices. The system contains three parts, the application software, the database and the web page. The application software manages multiple RFID devices, such as readers and portals, simultaneously. It communicates with the devices through application programming interface (API) provided by the device vendor. The application software converts data collected by the RFID readers and portals to readable information. It is capable of encrypting data using 256 bits advanced encryption standard (AES). The application software has a graphical user interface (GUI). Themore » GUI mimics the configurations of the nucler material storage sites or transport vehicles. The GUI gives the user and system administrator an intuitive way to read the information and/or configure the devices. The application software is capable of sending the information to a remote, dedicated and secured web and database server. Two captured screen samples, one for storage and transport, are attached. The database is constructed to handle a large number of RFID tag readers and portals. A SQL server is employed for this purpose. An XML script is used to update the database once the information is sent from the application software. The design of the web page imitates the design of the application software. The web page retrieves data from the database and presents it in different panels. The user needs a user name combined with a password to access the web page. The web page is capable of sending e-mail and text messages based on preset criteria, such as when alarm thresholds are excceeded. A captured screen sample is attached. The application software is designed to be installed on a local computer. The local computer is directly connected to the RFID devices and can be controlled locally or remotely. There are multiple local computers managing different sites or transport vehicles. The control from remote sites and information transmitted to a central database server is through secured internet. The information stored in the central databaser server is shown on the web page. The users can view the web page on the internet. A dedicated and secured web and database server (https) is used to provide information security.« less

Dynamics, chemical properties and bioavailability of DOC in an early successional catchment

NASA Astrophysics Data System (ADS)

Risse-Buhl, U.; Hagedorn, F.; Dümig, A.; Gessner, M. O.; Schaaf, W.; Nii-Annang, S.; Gerull, L.; Mutz, M.

2013-07-01

The dynamics of dissolved organic carbon (DOC) have been intensively studied in mature ecosystems, but little is known about DOC dynamics and the significance of DOC as a substrate for microbial activity in early-successional catchments. We determined the concentration, chemical composition, source, radiocarbon age, and bioavailability of DOC along the hydrological flow path from soil solution to a downstream pond in a recently constructed catchment (Chicken Creek Catchment, Germany). Soil solution, upwelling ground water, stream water, subsurface water in an alluvial fan, and pond water all had high DOC concentrations (averages: 6.0-11.6 mg DOC L-1), despite small carbon stocks in both vegetation and soil of the catchment. Solid-state CPMAS 13C NMR of DOC in upwelling ground water revealed a higher proportion of aromatic compounds (32%) and a lower proportion of carbohydrates (33%) than in pond water (18% and 45%, respectively). The average 14C age of DOC in upwelling ground water was 2600 to 2900 yr, while organic matter of the Quaternary substrate of the catchment had a 14C age of 3000 to 16 000 yr. Both the 14C age data and 13C NMR spectra suggest that DOC partly derived from organic matter of the Quaternary substrate (about 40 to 90% of the C in the DOC), indicating that both recent and old C of the DOC can support microbial activity during early ecosystem succession. However, in a 70 day incubation experiment, only about 11% of the total DOC was found to be bioavailable. This proportion was irrespective of the water type. Origin of the microbial communities within the catchment (enriched from soil, stream sediment or pond water) also had only a marginal effect on overall DOC utilization.

Association of dissolved mercury with dissolved organic carbon in U.S. rivers and streams: The role of watershed soil organic carbon

NASA Astrophysics Data System (ADS)

Stoken, Olivia M.; Riscassi, Ami L.; Scanlon, Todd M.

2016-04-01

Streams and rivers are important pathways for the export of atmospherically deposited mercury (Hg) from watersheds. Dissolved Hg (HgD) is strongly associated with dissolved organic carbon (DOC) in stream water, but the ratio of HgD to DOC is highly variable between watersheds. In this study, the HgD:DOC ratios from 19 watersheds were evaluated with respect to Hg wet deposition and watershed soil organic carbon (SOC) content. On a subset of sites where data were available, DOC quality measured by specific ultra violet absorbance at 254 nm, was considered as an additional factor that may influence HgD:DOC . No significant relationship was found between Hg wet deposition and HgD:DOC, but SOC content (g m-2) was able to explain 81% of the variance in the HgD:DOC ratio (ng mg-1) following the form: HgD:DOC=17.8*SOC-0.41. The inclusion of DOC quality as a secondary predictor variable explained only an additional 1% of the variance. A mathematical framework to interpret the observed power-law relationship between HgD:DOC and SOC suggests Hg supply limitation for adsorption to soils with relatively large carbon pools. With SOC as a primary factor controlling the association of HgD with DOC, SOC data sets may be utilized to predict stream HgD:DOC ratios on a more geographically widespread basis. In watersheds where DOC data are available, estimates of HgD may be readily obtained. Future Hg emissions policies must consider soil-mediated processes that affect the transport of Hg and DOC from terrestrial watersheds to streams for accurate predictions of water quality impacts.

Drivers of inverse DOC-nitrate loss patterns in forest soils and streams

NASA Astrophysics Data System (ADS)

Goodale, C. L.

2013-12-01

Nitrate loss from forested catchments varies greatly across sites and over time, with few reliable correlates. One of the few recurring patterns, however, is the negative nonlinear relationship that occurs regularly between surface water nitrate and dissolved organic carbon (DOC) concentrations: that is, nitrate declines sharply as DOC concentrations increase, and high nitrate levels occur only at low DOC concentrations. Several hypotheses have been proposed to explain this pattern, but its cause has remained speculative. It is likely to be driven by C- or N-limitation of biological processes such as assimilation or denitrification, but the identity of which biological process or the main landscape position of their activity are not known. We examined whether DOC and nitrate are both driven by soil C content, at scales of both soil blocks and across catchments, by measuring soil, soil extract, and surface water chemistry across nine catchments selected from long-term monitoring networks in the Catskill and Adirondack Mountains. We measured soil C and N status and solution nitrate, DOC, bioavailable DOC (bDOC), and isotopic composition (13C-DOC, 15N- and 18O-NO3) to examine whether variation in stocks of soil C partly controls DOC and nitrate loss from forested catchments in New York State. These measurements showed that surface soil C and C:N ratio together determine soil production of DOC and nitrate, reflecting assimilative demand for N by heterotrophic microbes. Yet, they also show that these processes do not produce the inverse DOC-NO3 curve observed at the catchment scale. Rather, catchment-scale DOC-nitrate patterns are more likely to be governed by the balance between excess nitrate production and its bDOC-mediated loss to denitrification.

Contrasting dissolved organic carbon dynamics at two forested catchments interpreted from high-frequency optical sensor measurements

NASA Astrophysics Data System (ADS)

Saraceno, J.; Shanley, J. B.

2015-12-01

Stream dissolved organic carbon (DOC) concentrations can change rapidly during high-flow events. The timing and magnitude of these changes relative to the event hydrograph can yield insights about possible DOC sources its flow paths to the stream. In situ fluorescent dissolved organic matter (FDOM) sensors that generate high-frequency observations enable detailed examination of high-flow DOC- discharge hysteresis. In this presentation, we interpret high-flow DOC dynamics at two of the five U.S. Geological Survey (USGS) Water, Energy, and Biogeochemical Budgets (WEBB) sites - Panola Mountain, Georgia and Sleepers River, Vermont. Based on laboratory analyses of weekly and event grab samples, both USGS WEBB sites had a similar DOC ranges: from ~1 milligrams per liter (mg/L) at base flow to ~11-15 mg/L during the largest events. A curvilinear relationship between DOC and FDOM (corrected for temperature and turbidity interferences) was used to model a continuous time series of DOC. At the Sleepers River site, DOC showed a seasonal pattern of increasing DOC response; from fairly subdued during spring snowmelt, to a maximum during autumn leaf-fall. The DOC response to discharge showed a consistent clockwise hysteresis (DOC peak, lagged discharge peak). At the Panola Mountain site, maximum event DOC response was lower during wet conditions in the winter and spring. Hysteresis was less expressed at Panola Mountain relative to Sleepers River and displayed both clockwise and counterclockwise patterns, which were dependent on antecedent moisture conditions. The greater synchrony of DOC and discharge peaks at Panola Mountain suggests that DOC sources are closer to the stream and (or) move to the stream more quickly, than at Sleepers River.

78 FR 28147 - Grapes Grown in Designated Area of Southeastern California; Increased Assessment Rate

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-14

... Service 7 CFR Part 925 [Doc. No. AMS-FV-13-0005; FV13-925-1 PR] Grapes Grown in Designated Area of... California Desert Grape Administrative Committee (Committee) for the 2013 and subsequent fiscal periods from $0.0150 to $0.0165 per 18-pound lug of grapes handled. The Committee locally administers the...

78 FR 5162 - Designation of a Nonessential Experimental Population of Central Valley Spring-Run Chinook Salmon...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-01-24

... Director, Office of Protected Resources, National Marine Fisheries Service. [FR Doc. 2013-01343 Filed 1-23.... SUMMARY: On January 16, 2013, we, NMFS, published a proposed rule to designate a nonessential experimental... January 29, 2013, at the Fresno Metropolitan Flood Control District, Board Meeting Room, 5469 E. Olive...

76 FR 68460 - Designation of a Class of Employees for Addition to the Special Exposure Cohort

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-04

... designate a class of employees from the Ames Laboratory at Iowa State University as an addition to the... contractors and subcontractors who worked in any area of the Ames Laboratory at Iowa State University [email protected] . John Howard, Director, National Institute for Occupational Safety and Health. [FR Doc. 2011...

75 FR 44967 - Designation of a Class of Employees for Addition to the Special Exposure Cohort

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-30

...: HHS gives notice of a decision to designate a class of employees from the University of Rochester... University of Rochester Atomic Energy Project in Rochester, New York, from September 1, 1943 through [email protected] . John Howard, Director, National Institute for Occupational Safety and Health. [FR Doc. 2010...

Diel fluctuations of viscosity-driven riparian inflow affect streamflow DOC concentration

NASA Astrophysics Data System (ADS)

Schwab, Michael P.; Klaus, Julian; Pfister, Laurent; Weiler, Markus

2018-04-01

Diel fluctuations of stream water DOC concentrations are generally explained by a complex interplay of different instream processes. We measured the light absorption spectrum of water and DOC concentrations in situ and with high frequency by means of a UV-Vis spectrometer during 18 months at the outlet of a forested headwater catchment in Luxembourg (0.45 km2). We generally observed diel DOC fluctuations with a maximum in the afternoon during days that were not affected by rainfall-runoff events. We identified an increased inflow of terrestrial DOC to the stream in the afternoon, causing the DOC maxima in the stream. The terrestrial origin of the DOC was derived from the SUVA-254 (specific UV absorbance at 254 nm) index, which is a good indicator for the aromaticity of DOC. In the studied catchment, the most likely process that can explain the diel DOC input variations towards the stream is the so-called viscosity effect. The water temperature in the upper parts of the saturated riparian zone is increasing during the day, leading to a lower viscosity and therefore a higher hydraulic conductivity. Consequently, more water from areas that are rich in terrestrial DOC passes through the saturated riparian zone and contributes to streamflow in the afternoon. We believe that not only diel instream processes, but also viscosity-driven diel fluctuations of terrestrial DOC input should be considered to explain diel DOC patterns in streams.

Organic Carbon Mobilisation Mechanisms: Evidence from Globally Distributed Stalagmite Records

NASA Astrophysics Data System (ADS)

Baldini, J. U. L.; Fairchild, I. J.; Wynn, P.; Bourdin, C.; Muller, W.; Hartland, A.; Perrette, Y.; Worrall, F.; Bartlett, R.

2017-12-01

Identifying the cause of widespread increases in surface water dissolved organic carbon (DOC) concentrations in recent years is the subject of a contentious debate. Although DOC trends may partially reflect climate change, in many catchments they may also result from increased soil carbon solubility associated with decreases in acid rain due to lower atmospheric sulphur emissions. However, the lack of long-term DOC records hampers constraining climate's role in modulating DOC trends versus that of recovery from acidification. Here we help clarify the causes of recent DOC increases by using a combination of laboratory soil experiments and new stalagmite geochemical data. Laboratory experiments with soils sampled from above several key caves simulate the effect of acidity, temperature, and soil microbial processes on DOC release. These experiments are used to inform records of DOC encoded within several stalagmites from currently acidified, previously acidified, and unacidified sites, and which collectively yield insights into the timing of DOC change in the past. These records of stalagmite DOC concentration and composition are discussed within the context of the ongoing debate regarding the mechanism responsible for DOC release.

An Efficient and Practical Smart Card Based Anonymity Preserving User Authentication Scheme for TMIS using Elliptic Curve Cryptography.

PubMed

Amin, Ruhul; Islam, S K Hafizul; Biswas, G P; Khan, Muhammad Khurram; Kumar, Neeraj

2015-11-01

In the last few years, numerous remote user authentication and session key agreement schemes have been put forwarded for Telecare Medical Information System, where the patient and medical server exchange medical information using Internet. We have found that most of the schemes are not usable for practical applications due to known security weaknesses. It is also worth to note that unrestricted number of patients login to the single medical server across the globe. Therefore, the computation and maintenance overhead would be high and the server may fail to provide services. In this article, we have designed a medical system architecture and a standard mutual authentication scheme for single medical server, where the patient can securely exchange medical data with the doctor(s) via trusted central medical server over any insecure network. We then explored the security of the scheme with its resilience to attacks. Moreover, we formally validated the proposed scheme through the simulation using Automated Validation of Internet Security Schemes and Applications software whose outcomes confirm that the scheme is protected against active and passive attacks. The performance comparison demonstrated that the proposed scheme has lower communication cost than the existing schemes in literature. In addition, the computation cost of the proposed scheme is nearly equal to the exiting schemes. The proposed scheme not only efficient in terms of different security attacks, but it also provides an efficient login, mutual authentication, session key agreement and verification and password update phases along with password recovery.

Design and Analysis of an Enhanced Patient-Server Mutual Authentication Protocol for Telecare Medical Information System.

PubMed

Amin, Ruhul; Islam, S K Hafizul; Biswas, G P; Khan, Muhammad Khurram; Obaidat, Mohammad S

2015-11-01

In order to access remote medical server, generally the patients utilize smart card to login to the server. It has been observed that most of the user (patient) authentication protocols suffer from smart card stolen attack that means the attacker can mount several common attacks after extracting smart card information. Recently, Lu et al.'s proposes a session key agreement protocol between the patient and remote medical server and claims that the same protocol is secure against relevant security attacks. However, this paper presents several security attacks on Lu et al.'s protocol such as identity trace attack, new smart card issue attack, patient impersonation attack and medical server impersonation attack. In order to fix the mentioned security pitfalls including smart card stolen attack, this paper proposes an efficient remote mutual authentication protocol using smart card. We have then simulated the proposed protocol using widely-accepted AVISPA simulation tool whose results make certain that the same protocol is secure against active and passive attacks including replay and man-in-the-middle attacks. Moreover, the rigorous security analysis proves that the proposed protocol provides strong security protection on the relevant security attacks including smart card stolen attack. We compare the proposed scheme with several related schemes in terms of computation cost and communication cost as well as security functionalities. It has been observed that the proposed scheme is comparatively better than related existing schemes.

A Comparison Between Publish-and-Subscribe and Client-Server Models in Distributed Control System Networks

NASA Technical Reports Server (NTRS)

Boulanger, Richard P., Jr.; Kwauk, Xian-Min; Stagnaro, Mike; Kliss, Mark (Technical Monitor)

1998-01-01

The BIO-Plex control system requires real-time, flexible, and reliable data delivery. There is no simple "off-the-shelf 'solution. However, several commercial packages will be evaluated using a testbed at ARC for publish- and-subscribe and client-server communication architectures. Point-to-point communication architecture is not suitable for real-time BIO-Plex control system. Client-server architecture provides more flexible data delivery. However, it does not provide direct communication among nodes on the network. Publish-and-subscribe implementation allows direct information exchange among nodes on the net, providing the best time-critical communication. In this work Network Data Delivery Service (NDDS) from Real-Time Innovations, Inc. ARTIE will be used to implement publish-and subscribe architecture. It offers update guarantees and deadlines for real-time data delivery. Bridgestone, a data acquisition and control software package from National Instruments, will be tested for client-server arrangement. A microwave incinerator located at ARC will be instrumented with a fieldbus network of control devices. BridgeVIEW will be used to implement an enterprise server. An enterprise network consisting of several nodes at ARC and a WAN connecting ARC and RISC will then be setup to evaluate proposed control system architectures. Several network configurations will be evaluated for fault tolerance, quality of service, reliability and efficiency. Data acquired from these network evaluation tests will then be used to determine preliminary design criteria for the BIO-Plex distributed control system.

BEAM web server: a tool for structural RNA motif discovery.

PubMed

Pietrosanto, Marco; Adinolfi, Marta; Casula, Riccardo; Ausiello, Gabriele; Ferrè, Fabrizio; Helmer-Citterich, Manuela

2018-03-15

RNA structural motif finding is a relevant problem that becomes computationally hard when working on high-throughput data (e.g. eCLIP, PAR-CLIP), often represented by thousands of RNA molecules. Currently, the BEAM server is the only web tool capable to handle tens of thousands of RNA in input with a motif discovery procedure that is only limited by the current secondary structure prediction accuracies. The recently developed method BEAM (BEAr Motifs finder) can analyze tens of thousands of RNA molecules and identify RNA secondary structure motifs associated to a measure of their statistical significance. BEAM is extremely fast thanks to the BEAR encoding that transforms each RNA secondary structure in a string of characters. BEAM also exploits the evolutionary knowledge contained in a substitution matrix of secondary structure elements, extracted from the RFAM database of families of homologous RNAs. The BEAM web server has been designed to streamline data pre-processing by automatically handling folding and encoding of RNA sequences, giving users a choice for the preferred folding program. The server provides an intuitive and informative results page with the list of secondary structure motifs identified, the logo of each motif, its significance, graphic representation and information about its position in the RNA molecules sharing it. The web server is freely available at http://beam.uniroma2.it/ and it is implemented in NodeJS and Python with all major browsers supported. marco.pietrosanto@uniroma2.it. Supplementary data are available at Bioinformatics online.

SFESA: a web server for pairwise alignment refinement by secondary structure shifts.

PubMed

Tong, Jing; Pei, Jimin; Grishin, Nick V

2015-09-03

Protein sequence alignment is essential for a variety of tasks such as homology modeling and active site prediction. Alignment errors remain the main cause of low-quality structure models. A bioinformatics tool to refine alignments is needed to make protein alignments more accurate. We developed the SFESA web server to refine pairwise protein sequence alignments. Compared to the previous version of SFESA, which required a set of 3D coordinates for a protein, the new server will search a sequence database for the closest homolog with an available 3D structure to be used as a template. For each alignment block defined by secondary structure elements in the template, SFESA evaluates alignment variants generated by local shifts and selects the best-scoring alignment variant. A scoring function that combines the sequence score of profile-profile comparison and the structure score of template-derived contact energy is used for evaluation of alignments. PROMALS pairwise alignments refined by SFESA are more accurate than those produced by current advanced alignment methods such as HHpred and CNFpred. In addition, SFESA also improves alignments generated by other software. SFESA is a web-based tool for alignment refinement, designed for researchers to compute, refine, and evaluate pairwise alignments with a combined sequence and structure scoring of alignment blocks. To our knowledge, the SFESA web server is the only tool that refines alignments by evaluating local shifts of secondary structure elements. The SFESA web server is available at http://prodata.swmed.edu/sfesa.

An ontology-based telemedicine tasks management system architecture.

PubMed

Nageba, Ebrahim; Fayn, Jocelyne; Rubel, Paul

2008-01-01

The recent developments in ambient intelligence and ubiquitous computing offer new opportunities for the design of advanced Telemedicine systems providing high quality services, anywhere, anytime. In this paper we present an approach for building an ontology-based task-driven telemedicine system. The architecture is composed of a task management server, a communication server and a knowledge base for enabling decision makings taking account of different telemedical concepts such as actors, resources, services and the Electronic Health Record. The final objective is to provide an intelligent management of the different types of available human, material and communication resources.

TRSkit: A Simple Digital Library Toolkit

NASA Technical Reports Server (NTRS)

Nelson, Michael L.; Esler, Sandra L.

1997-01-01

This paper introduces TRSkit, a simple and effective toolkit for building digital libraries on the World Wide Web. The toolkit was developed for the creation of the Langley Technical Report Server and the NASA Technical Report Server, but is applicable to most simple distribution paradigms. TRSkit contains a handful of freely available software components designed to be run under the UNIX operating system and served via the World Wide Web. The intended customer is the person that must continuously and synchronously distribute anywhere from 100 - 100,000's of information units and does not have extensive resources to devote to the problem.

Distribution characteristics of dissolved organic carbon in annular wetland soil-water solutions through soil profiles in the Sanjiang Plain, northeast China.

PubMed

Xi, Min; Lu, Xian-Guo; Li, Yue; Kong, Fan-Long

2007-01-01

Overwhelming evidence reveals that concentrations of dissolved organic carbon (DOC) have increased in streams which brings negative environmental impacts. DOC in stream flow is mainly originated from soil-water solutions of watershed. Wetlands prove to be the most sensitive areas as an important DOC reserve between terrestrial and fluvial biogeosystems. This reported study was focused on the distribution characteristics and the controlling factors of DOC in soil-water solutions of annular wetland, i.e., a dishing wetland and a forest wetland together, in the Sanjiang Plain, Northeast China. The results indicate that DOC concentrations in soil-water solutions decreased and then increased with increasing soil depth in the annular wetland. In the upper soil layers of 0-10 cm and 10-20 cm, DOC concentrations in soil-water solutions linearly increased from edge to center of the annular wetland (R2 = 0.3122 and R2 = 0.443). The distribution variations were intimately linked to DOC production and utilization and DOC transport processes in annular wetland soil-water solutions. The concentrations of total organic carbon (TOC), total carbon (TC) and Fe(II), DOC mobility and continuous vertical and lateral flow affected the distribution variations of DOC in soil-water solutions. The correlation coefficients between DOC concentrations and TOC, TC and Fe(II) were 0.974, 0.813 and 0.753 respectively. These distribution characteristics suggested a systematic response of the distribution variations of DOC in annular wetland soil-water solutions to the geometry of closed depressions on a scale of small catchments. However, the DOC in soil pore water of the annular wetland may be the potential source of DOC to stream flow on watershed scale. These observations also implied the fragmentation of wetland landscape could bring the spatial-temporal variations of DOC distribution and exports, which would bring negative environmental impacts in watersheds of the Sanjiang Plain.

Process Inference from High Frequency Temporal Variations in Dissolved Organic Carbon (DOC) Dynamics Across Nested Spatial Scales

NASA Astrophysics Data System (ADS)

Tunaley, C.; Tetzlaff, D.; Lessels, J. S.; Soulsby, C.

2014-12-01

In order to understand aquatic ecosystem functioning it is critical to understand the processes that control the spatial and temporal variations in DOC. DOC concentrations are highly dynamic, however, our understanding at short, high frequency timescales is still limited. Optical sensors which act as a proxy for DOC provide the opportunity to investigate near-continuous DOC variations in order to understand the hydrological and biogeochemical processes that control concentrations at short temporal scales. Here we present inferred 15 minute stream water DOC data for a 12 month period at three nested scales (1km2, 3km2 and 31km2) for the Bruntland Burn, a headwater catchment in NE Scotland. High frequency data were measured using FDOM and CDOM probes which work by measuring the fluorescent component and coloured component, respectively, of DOC when exposed to ultraviolet light. Both FDOM and CDOM were strongly correlated (r2 >0.8) with DOC allowing high frequency estimations. Results show the close coupling of DOC with discharge throughout the sampling period at all three spatial scales. However, analysis at the event scale highlights anticlockwise hysteresis relationships between DOC and discharge due to the delay in DOC being flushed from the increasingly large areas of peaty soils as saturation zones expand and increase hydrological connectivity. Lag times vary between events dependent on antecedent conditions. During a 10 year drought period in late summer 2013 it was apparent that very small changes in discharge on a 15 minute timescale result in high increases in DOC. This suggests transport limitation during this period where DOC builds up in the soil and is not flushed regularly, therefore any subsequent increase in discharge results in large DOC peaks. The high frequency sensors also reveal diurnal variability during summer months related to the photo-oxidation, evaporative and biological influences of DOC during the day. This relationship is less significant during the winter months.

Dynamics, chemical properties and bioavailability of DOC in an early successional catchment

NASA Astrophysics Data System (ADS)

Risse-Buhl, U.; Hagedorn, F.; Dümig, A.; Gessner, M. O.; Schaaf, W.; Nii-Annang, S.; Gerull, L.; Mutz, M.

2013-01-01

The dynamics of dissolved organic carbon (DOC) have been intensively studied in mature ecosystems, but little is known about DOC dynamics and the significance of DOC as a substrate for microbial activity in early-successional catchments. We determined the concentration, chemical composition, source, radiocarbon age, and bioavailability of DOC along the hydrological flow path from soil solution to a downstream pond in a recently constructed catchment (Chicken Creek Catchment, Germany). Soil solution, upwelling ground water, subsurface water in an alluvial fan, and pond water all had high DOC concentrations (averages of 6.0-11.6 mg DOC L-1), despite small carbon stocks in either vegetation or soil of the early-successional catchment. The mean 14C age of DOC in upwelling ground water was 2600 to 2800 yr. Solid-state CPMAS 13C NMR revealed a higher proportion of aromatic compounds (32%) and a lower proportion of carbohydrates (33%) in upwelling ground water than in pond water (18% and 45%, respectively). The 14C age and 13C NMR spectra suggest that DOC was partly mobilized from charred organic matter of the Quaternary substrate. In an experimental 70-days incubation experiment, 20% of the total DOC was found to be bioavailable, irrespective of the water type. Origin of microbial communities (enriched from soil, stream sediment or pond water) had only marginal effects on overall DOC utilization. Overall, these data suggest that the old DOC can support microbial activity during early ecosystem succession to some extent, although the largest fraction is recalcitrant DOC that is exported from the catchment once it has been mobilized.

[Response of mineralization of dissolved organic carbon to soil moisture in paddy and upland soils in hilly red soil region].

PubMed

Chen, Xiang-Bi; Wang, Ai-Hua; Hu, Le-Ning; Huang, Yuan; Li, Yang; He, Xun-Yang; Su, Yi-Rong

2014-03-01

Typical paddy and upland soils were collected from a hilly subtropical red-soil region. 14C-labeled dissolved organic carbon (14C-DOC) was extracted from the paddy and upland soils incorporated with 14C-labeled straw after a 30-day (d) incubation period under simulated field conditions. A 100-d incubation experiment (25 degrees C) with the addition of 14C-DOC to paddy and upland soils was conducted to monitor the dynamics of 14C-DOC mineralization under different soil moisture conditions [45%, 60%, 75%, 90%, and 105% of the field water holding capacity (WHC)]. The results showed that after 100 days, 28.7%-61.4% of the labeled DOC in the two types of soils was mineralized to CO2. The mineralization rates of DOC in the paddy soils were significantly higher than in the upland soils under all soil moisture conditions, owing to the less complex composition of DOC in the paddy soils. The aerobic condition was beneficial for DOC mineralization in both soils, and the anaerobic condition was beneficial for DOC accumulation. The biodegradability and the proportion of the labile fraction of the added DOC increased with the increase of soil moisture (45% -90% WHC). Within 100 days, the labile DOC fraction accounted for 80.5%-91.1% (paddy soil) and 66.3%-72.4% (upland soil) of the cumulative mineralization of DOC, implying that the biodegradation rate of DOC was controlled by the percentage of labile DOC fraction.

Intelligent Virtual Station (IVS)

NASA Technical Reports Server (NTRS)

2002-01-01

The Intelligent Virtual Station (IVS) is enabling the integration of design, training, and operations capabilities into an intelligent virtual station for the International Space Station (ISS). A viewgraph of the IVS Remote Server is presented.

Benthic fluxes of dissolved organic carbon from gas hydrate sediments in the northern South China Sea

PubMed Central

Hung, Chia-Wei; Huang, Kuo-Hao; Shih, Yung-Yen; Lin, Yu-Shih; Chen, Hsin-Hung; Wang, Chau-Chang; Ho, Chuang-Yi; Hung, Chin-Chang; Burdige, David J.

2016-01-01

Hydrocarbon vents have recently been reported to contribute considerable amounts of dissolved organic carbon (DOC) to the oceans. Many such hydrocarbon vents widely exist in the northern South China Sea (NSCS). To investigate if these hydrocarbon vent sites release DOC, we used a real-time video multiple-corer to collect bottom seawater and surface sediments at vent sites. We analyzed concentrations of DOC in these samples and estimated DOC fluxes. Elevated DOC concentrations in the porewaters were found at some sites suggesting that DOC may come from these hydrocarbon vents. Benthic fluxes of DOC from these sediments were 28 to 1264 μmol m−2 d−1 (on average ~321 μmol m−2 d−1) which are several times higher than most DOC fluxes in coastal and continental margin sediments. The results demonstrate that the real-time video multiple-corer can precisely collect samples at vent sites. The estimated benthic DOC flux from the methane venting sites (8.6 × 106 mol y−1), is 24% of the DOC discharge from the Pearl River to the South China Sea, indicating that these sediments make an important contribution to the DOC in deep waters. PMID:27432631

Web-based Loansome Doc, librarians, and end users: results from a survey of the Southeast Region.

PubMed

Paden, S L; Batson, A L; Wallace, R L

2001-07-01

The study examines how Loansome Doc services are implemented and used by libraries in the Southeast Region and describe end users' experiences with and attitudes toward Loansome Doc. 251 active DOCLINE libraries and 867 Loansome Doc users were surveyed. Roughly one half of the libraries offered Loansome Doc services. Of those that did not, most indicated no plans to offer it in the future. The majority had a small number of end users and experienced minimal increases in interlibrary loan activity. Problems were relatively rare. Satisfaction with Loansome Doc was high among all types of libraries. End users were usually physicians or other health care professionals who requested articles for research and patient care. Most learned about Loansome Doc through PubMed or Internet Grateful Med. End users appeared to be largely self-taught or received informal instruction in Loansome Doc. Loansome Doc filled document requests in a timely manner, and end users reported being satisfied with the service. Greater promotion of what Loansome Doc is and how it can benefit libraries can increase the number of participating libraries. While satisfaction of Loansome Doc end users is high, satisfaction could be increased with more help on the PubMed screen, more library training, and faster delivery methods.

Inverse coupling of DOC and nitrate export from soils and streams

NASA Astrophysics Data System (ADS)

Goodale, Christine

2013-04-01

Over the last two decades, nitrate concentrations in surface waters have decreased across the Northeastern United States and parts of northern Europe. Many hypotheses have been proposed to explain this decrease, but the cause remains unclear. One control may be associated with increasing abundance of dissolved organic carbon (DOC), which in turn may be a result of soil recovery from acidification. Compared across catchments, surface water NO3- decreases sharply with increasing DOC concentration. Here, we used measurements of soil and solution nitrate, DOC, and their isotopic composition (13C-DOC, 15N- and 18O-NO3) to test several related hypotheses that changing acidification affects the release of DOC and bio-available DOC (bDOC) from soil, and that variation in stocks of soil C and release of bDOC partly control NO3- export from forested catchments in New York State, USA. We examined whether DOC and NO3- are both driven by soil C processes that produce inverse coupling at the scale of soil cores as well as across catchments, through comparison of soil and surface water chemistry across nine catchments selected from long-term monitoring networks in the Catskill and Adirondack Mountains. In addition, we conducted a series of soil core leaching experiments to examine the role of acidification and recovery in driving the net production of DOC and NO3- from soils. Over 8 months, soil cores were leached biweekly with simulated rainfall solutions of varying pH (3.6 to 7.0) from additions of H2SO4, CaCO3 and NaOH. These experiments did not yield a pH-induced change in DOC quantity, but did show a change in DOC quality, in that acidified cores released more bio-available DOC with less depleted 13C-DOC than cores with experimentally increased pH. All cores leached substantial amounts of nitrate. Together, these lab- and field comparisons are being used to identify the role of soil production and consumption processes in driving cross-watershed differences in DOC and NO3- loss, or whether other factors (e.g., riparian, in-stream or hydrologic processes) likely explain this relationship.

An investigation of size-fractionated organic matter from Lake Superior and a tributary stream using radiocarbon, stable isotopes and NMR

NASA Astrophysics Data System (ADS)

Zigah, Prosper K.; Minor, Elizabeth C.; Abdulla, Hussain A. N.; Werne, Josef P.; Hatcher, Patrick G.

2014-02-01

This study investigated the concentration and isotopic composition of different size fractions of organic matter (OM) in Lake Superior and in one of its many tributary streams and rivers (Amity Creek, Duluth, Minnesota, USA). Structural compositional drivers of the Δ14C of high molecular weight (HMW, >1 kDa) dissolved organic carbon (DOC) in the lake were also evaluated. Low molecular weight (LMW, <1 kDa) DOC was the fraction containing the largest proportion (68-88%) of organic carbon (OC) in the lake. Particulate organic carbon (POC, >0.7 μm) was generally 13C-depleted (-29 ± 1.2‰) relative to “bulk” (<0.7 μm) DOC (-26.4 ± 0.7‰), “init” (<0.2 μm) DOC (-26.6 ± 0.8‰), HMW DOC (-26.9 ± 0.3‰) and LMW DOC (-26.5 ± 0.9‰), and had more variable 14C content (Δ14C of -94‰ to 53‰; 735 years BP to modern) than the other size fractions. Init DOC (Δ14C of 17-59‰), HMW DOC (Δ14C of 23-64‰) and LMW DOC (Δ14C of 16-62‰) all reflected contemporary (modern) radiocarbon signatures. Bulk DOC (Δ14C of -19‰ to 57‰; 90 years BP to modern) had modern radiocarbon values in the offshore sites (Δ14C of 2-57‰) with pre-aged samples (Δ14C of -8‰ to -19‰) seen at the nearshore site. HMW DOM was relatively N-poor (C:N of 12-19) compared to particulate organic matter (POM, C:N of 8-10) revealing either a more diagenetically altered state or contrasting sources. 13C NMR data showed that biochemical composition of HMW DOC in Lake Superior was dominated by carbohydrates (53-65%) with only trace aromatic components (2-4%). Structurally complex components such as heteropolysaccharides (HPS), amide/peptides and amino sugars (AMS) constitute 75-84% of HMW DOC whereas carboxylic-rich alicyclic molecules (CRAM) made up 16-25% of HMW DOC in the lake. Combined HPS and AMS, O-alkyl carbohydrate carbon, and total carbohydrate carbon contents were significantly positively correlated to the Δ14C of HMW DOC suggesting they contribute a contemporary 14C-enriched component to the HMW DOC in the lake. In contrast, CRAM and aliphatic carbons were significantly inversely correlated with Δ14C of HMW DOC implying that these represent 14C-depleted (older) components of HMW DOC in the lake. At Amity Creek, storm events led to larger loads of bulk DOC and POC, which were both 14C-enriched (modern). However, in baseflow conditions 14C-depleted bulk DOC and POC were exported. LMW DOC from the creek was considerably 14C-depleted compared to concurrent HMW DOC.

Transformation of molecular weight distributions of dissolved organic carbon and UV-absorbing compounds at full-scale wastewater-treatment plants.

PubMed

Esparza-Soto, Mario; Fox, Peter; Westerhoff, Paul

2006-03-01

The molecular-weight distribution (MWD) of wastewater dissolved-organic carbon (DOC) was determined in samples from seven full-scale wastewater-treatment plants (WWTPs) that use different biological treatments (air activated sludge [air-AS], pure-oxygen AS [O2-AS], and trickling filters). The research objective was to determine how different biological treatments influenced the MWD of wastewater DOC. Primary sedimentation effluent DOC from most of the WWTPs exhibited a skewed distribution toward the low-molecular-weight fraction (MWF) (40 to 50%, < 0.5 K Daltons [KDa]). The Air-AS effluent DOC exhibited a centrally clustered distribution, with the majority of DOC in the intermediate MWF (0.5 to 3 KDa). The O2-AS effluent DOC exhibited a skewed distribution toward the high MWF (> 3 KDa). The removal of DOC by air- and O2-AS bacteria followed trends predicted by a macromolecule degradation model. Trickling-filter effluent DOC exhibited a skewed distribution toward the high MWF (50% DOC, > 3 KDa).

Predictive models for water sources with high susceptibility for bromine-containing disinfection by-product formation: implications for water treatment.

PubMed

Watson, Kalinda; Farré, Maria José; Birt, James; McGree, James; Knight, Nicole

2015-02-01

This study examines a matrix of synthetic water samples designed to include conditions that favour brominated disinfection by-product (Br-DBP) formation, in order to provide predictive models suitable for high Br-DBP forming waters such as salinity-impacted waters. Br-DBPs are known to be more toxic than their chlorinated analogues, in general, and their formation may be favoured by routine water treatment practices such as coagulation/flocculation under specific conditions; therefore, circumstances surrounding their formation must be understood. The chosen factors were bromide concentration, mineral alkalinity, bromide to dissolved organic carbon (Br/DOC) ratio and Suwannee River natural organic matter concentration. The relationships between these parameters and DBP formation were evaluated by response surface modelling of data generated using a face-centred central composite experimental design. Predictive models for ten brominated and/or chlorinated DBPs are presented, as well as models for total trihalomethanes (tTHMs) and total dihaloacetonitriles (tDHANs), and bromide substitution factors for the THMs and DHANs classes. The relationships described revealed that increasing alkalinity and increasing Br/DOC ratio were associated with increasing bromination of THMs and DHANs, suggesting that DOC lowering treatment methods that do not also remove bromide such as enhanced coagulation may create optimal conditions for Br-DBP formation in waters in which bromide is present.

Network characteristics for server selection in online games

NASA Astrophysics Data System (ADS)

Claypool, Mark

2008-01-01

Online gameplay is impacted by the network characteristics of players connected to the same server. Unfortunately, the network characteristics of online game servers are not well-understood, particularly for groups that wish to play together on the same server. As a step towards a remedy, this paper presents analysis of an extensive set of measurements of game servers on the Internet. Over the course of many months, actual Internet game servers were queried simultaneously by twenty-five emulated game clients, with both servers and clients spread out on the Internet. The data provides statistics on the uptime and populations of game servers over a month long period an an in-depth look at the suitability for game servers for multi-player server selection, concentrating on characteristics critical to playability--latency and fairness. Analysis finds most game servers have latencies suitable for third-person and omnipresent games, such as real-time strategy, sports and role-playing games, providing numerous server choices for game players. However, far fewer game servers have the low latencies required for first-person games, such as shooters or race games. In all cases, groups that wish to play together have a greatly reduced set of servers from which to choose because of inherent unfairness in server latencies and server selection is particularly limited as the group size increases. These results hold across different game types and even across different generations of games. The data should be useful for game developers and network researchers that seek to improve game server selection, whether for single or multiple players.

Humic substances-part 7: the biogeochemistry of dissolved organic carbon and its interactions with climate change.

PubMed

Porcal, Petr; Koprivnjak, Jean-François; Molot, Lewis A; Dillon, Peter J

2009-09-01

Dissolved organic matter, measured as dissolved organic carbon (DOC), is an important component of aquatic ecosystems and of the global carbon cycle. It is known that changes in DOC quality and quantity are likely to have ecological repercussions. This review has four goals: (1) to discuss potential mechanisms responsible for recent changes in aquatic DOC concentrations; (2) to provide a comprehensive overview of the interactions between DOC, nutrients, and trace metals in mainly boreal environments; (3) to explore the impact of climate change on DOC and the subsequent effects on nutrients and trace metals; and (4) to explore the potential impact of DOC cycling on climate change. We review recent research on the mechanisms responsible for recent changes in aquatic DOC concentrations, DOC interactions with trace metals, N, and P, and on the possible impacts of climate change on DOC in mainly boreal lakes. We then speculate on how climate change may affect DOC export and in-lake processing and how these changes might alter nutrient and metal export and processing. Furthermore, the potential impacts of changing DOC cycling patterns on climate change are examined. It has been noted that DOC concentrations in lake and stream waters have increased during the last 30 years across much of Europe and North America. The potential reasons for this increase include increasing atmospheric CO(2) concentration, climate warming, continued N deposition, decreased sulfate deposition, and hydrological changes due to increased precipitation, droughts, and land use changes. Any change in DOC concentrations and properties in lakes and streams will also impact the acid-base chemistry of these waters and, presumably, the biological, chemical, and photochemical reactions taking place. For example, the interaction of trace metals with DOC may be significantly altered by climate change as organically complexed metals such as Cu, Fe, and Al are released during photo-oxidation of DOC. The production and loss of DOC as CO(2) from boreal lakes may also be affected by changing climate. Climate change is unlikely to be uniform spatially with some regions becoming wetter while others become drier. As a result, rates of change in DOC export and concentrations will vary regionally and the changes may be non-linear. Climate change models predict that higher temperatures are likely to occur over most of the boreal forests in North America, Europe, and Asia over the next century. Climate change is also expected to affect the severity and frequency of storm and drought events. Two general climate scenarios emerge with which to examine possible DOC trends: warmer and wetter or warmer and drier. Increasing temperature and hydrological changes (specifically, runoff) are likely to lead to changes in the quality and quantity of DOC export from terrestrial sources to rivers and lakes as well as changes in DOC processing rates in lakes. This will alter the quality and concentrations of DOC and its constituents as well as its interactions with trace metals and the availability of nutrients. In addition, export rates of nutrients and metals will also change in response to changing runoff. Processing of DOC within lakes may impact climate depending on the extent to which DOC is mineralized to dissolved inorganic carbon (DIC) and evaded to the atmosphere or settles as particulate organic carbon (POC) to bottom sediments and thereby remaining in the lake. The partitioning of DOC between sediments and the atmosphere is a function of pH. Decreased DOC concentrations may also limit the burial of sulfate, as FeS, in lake sediments, thereby contributing acidity to the water by increasing the formation of H(2)S. Under a warmer and drier scenario, if lake water levels fall, previously stored organic sediments may be exposed to greater aeration which would lead to greater CO(2) evasion to the atmosphere. The interaction of trace metals with DOC may be significantly altered by climate change. Iron enhances the formation of POC during irradiation of lake water with UV light and therefore may be an important pathway for transfer of allochthonous DOC to the sediments. Therefore, changing Fe/DOC ratios could affect POC formation rates. If climate change results in altered DOC chemistry (e.g., fewer and/or weaker binding sites) more trace metals could be present in their toxic and bioavailable forms. The availability of nutrients may be significantly altered by climate change. Decreased DOC concentrations in lakes may result in increased Fe colloid formation and co-incident loss of adsorbable P from the water column. Climate change expressed as changes in runoff and temperature will likely result in changes in aquatic DOC quality and concentration with concomitant effects on trace metals and nutrients. Changes in the quality and concentration of DOC have implications for acid-base chemistry and for the speciation and bioavailability of certain trace metals and nutrients. Moreover, changes in DOC, metals, and nutrients are likely to drive changes in rates of C evasion and storage in lake sediments. The key controls on allochthonous DOC quality, quantity, and catchment export in response to climate change are still not fully understood. More detailed knowledge of these processes is required so that changes in DOC and its interactions with nutrients and trace metals can be better predicted based on changes caused by changing climate. More studies are needed concerning the effects of trace metals on DOC, the effects of changing DOC quality and quantity on trace metals and nutrients, and how runoff and temperature-related changes in DOC export affect metal and nutrient export to rivers and lakes.

Simultaneous effect of dissolved organic carbon, surfactant, and organic acid on the desorption of pesticides investigated by response surface methodology.

PubMed

Trinh, Ha Thu; Duong, Hanh Thi; Ta, Thao Thi; Van Cao, Hoang; Strobel, Bjarne W; Le, Giang Truong

2017-08-01

Desorption of pesticides (fenobucarb, endosulfan, and dichlorodiphenyltrichloroethane (DDT)) from soil to aqueous solution with the simultaneous presence of dissolved organic carbon (DOC), sodium dodecyl sulfate (SDS), and sodium oxalate (Oxa) was investigated in batch test by applying a full factorial design and the Box-Behnken response surface methodology (RSM). Five concentration levels of DOC (8 to 92 mg L -1 ), SDS (0 to 6.4 critical micelle concentration (CMC)), and Oxa (0 to 0.15 M) were used for the experiments with a rice field topsoil. The results of RSM analysis and analysis of variance (ANOVA) have shown that the experimental data could be well described by quadratic regression equations with determination coefficients (R 2 ) of 0.990, 0.976, and 0.984 for desorption of fenobucarb, endosulfan, and DDT, respectively. The individual effects and interaction of DOC, SDS, and Oxa were evaluated through quadratic regression equations. When the aqueous solution includes 50 mg L -1 DOC, 3.75 CMC SDS, and 0.1 M Oxa, the maximum desorption concentrations of fenobucarb, endosulfan, and DDT were 96, 80, and 75 μg L -1 , respectively. The lowest concentration of SDS, DOC, and Oxa caused the minimum desorption. This point at conditions of concern for flooding water is high content of organic compounds causing potentially high contamination by desorption, and the remarkably lower desorption at organic matter-free conditions. The suspended organic matter is one of the common characteristics of flooding and irrigation water in rice fields, and surfactants from pollution increase the problem with desorption of legacy pesticides in the rice fields.

Performance of granular activated carbon to remove micropollutants from municipal wastewater-A meta-analysis of pilot- and large-scale studies.

PubMed

Benstoem, Frank; Nahrstedt, Andreas; Boehler, Marc; Knopp, Gregor; Montag, David; Siegrist, Hansruedi; Pinnekamp, Johannes

2017-10-01

For reducing organic micropollutants (MP) in municipal wastewater effluents, granular activated carbon (GAC) has been tested in various studies. We did systematic literature research and found 44 studies dealing with the adsorption of MPs (carbamazepine, diclofenac, sulfamethoxazole) from municipal wastewater on GAC in pilot- and large-scale plants. Within our meta-analysis we plot the bed volumes (BV [m 3 water /m 3 GAC ]) until the breakthrough criterion of MP-BV20% was reached, dependent on potential relevant parameters (empty bed contact time EBCT, influent DOC DOC 0 and manufacturing method). Moreover, we performed statistical tests (ANOVAs) to check the results for significance. Single adsorbers operating time differs i.e. by 2500% until breakthrough of diclofenac-BV20% was reached (800-20,000 BV). There was still elimination of the "very well/well" adsorbable MPs such as carbamazepine and diclofenac even when the equilibrium of DOC had already been reached. No strong statistical significance of EBCT and DOC 0 on MP-BV20% could be found due to lack of data and the high heterogeneity of the studies using GAC of different qualities. In further studies, adsorbers should be operated ≫20,000 BV for exact calculation of breakthrough curves, and the following parameters should be recorded: selected MPs; DOC 0; UVA 254 ; EBCT; product name, manufacturing method and raw material of GAC; suspended solids (TSS); backwash interval; backwash program and pressure drop within adsorber. Based on our investigations we generally recommend using reactivated GAC to reduce the environmental impact and to carry out tests on pilot scale to collect reliable data for process design. Copyright © 2017 Elsevier Ltd. All rights reserved.

Dissolved Organic Carbon 14C in Southern Nevada Groundwater and Implications for Groundwater Travel Times

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hershey, Ronald L.; Fereday, Wyall; Thomas, James M

Dissolved inorganic carbon (DIC) carbon-14 ( 14C) ages must be corrected for complex chemical and physical reactions and processes that change the amount of 14C in groundwater as it flows from recharge to downgradient areas. Because of these reactions, DIC 14C can produce unrealistically old ages and long groundwater travel times that may, or may not, agree with travel times estimated by other methods. Dissolved organic carbon (DOC) 14C ages are often younger than DIC 14C ages because there are few chemical reactions or physical processes that change the amount of DOC 14C in groundwater. However, there are several issuesmore » that create uncertainty in DOC 14C groundwater ages including limited knowledge of the initial (A 0) DOC 14C in groundwater recharge and potential changes in DOC composition as water moves through an aquifer. This study examines these issues by quantifying A 0 DOC 14C in recharge areas of southern Nevada groundwater flow systems and by evaluating changes in DOC composition as water flows from recharge areas to downgradient areas. The effect of these processes on DOC 14C groundwater ages is evaluated and DOC and DIC 14C ages are then compared along several southern Nevada groundwater flow paths. Twenty-seven groundwater samples were collected from springs and wells in southern Nevada in upgradient, midgradient, and downgradient locations. DOC 14C for upgradient samples ranged from 96 to 120 percent modern carbon (pmc) with an average of 106 pmc, verifying modern DOC 14C ages in recharge areas, which decreases uncertainty in DOC 14C A 0 values, groundwater ages, and travel times. The HPLC spectra of groundwater along a flow path in the Spring Mountains show the same general pattern indicating that the DOC compound composition does not change along this flow path. Although DOC concentration decreases from recharge-area to downgradient groundwater, the organic compounds are similar, indicating that DOC 14C is unaffected by other processes such as microbial degradation. A small amount of organic carbon was leached from crushed volcanic and carbonate aquifer outcrop rock in rock-leaching experiments. The leached DOC was high in 14C (75 pmc carbonate rocks, 91 pmc volcanic) suggesting that the leached DOC likely came from microbes in the rock samples. The small amount of DOC and high 14C indicates that the amount of old organic carbon in these rocks is low so there should be minimal impact on groundwater DOC 14C ages. Based on the results from this study, DOC 14C ages do not require additional corrections. Several correction models were applied to DIC 14C ages to correct for water-rock reactions along two carbonate and two volcanic flow paths and the corresponding travel times were compare to DOC 14C travel times. The DOC 14C travel times were hundreds to thousands of years shorter than uncorrected and corrected DIC 14C travel times except for the upper section of one carbonate flow path. DOC 14C travel times ranged from 400 to 5,400 years as compared to DIC 14C that ranged from modern to 20,900 years. The DIC 14C ages are greatly influenced by carbonate mineral and gas reactions and other processes such as matrix diffusion, isotope exchange, or adsorption, which are not always adequately accounted for in DIC 14C groundwater age correction models.« less

Variable flushing mechanisms and landscape structure control stream DOC export during snowmelt in a set of nested catchments

Treesearch

Vincent J. Pacific; Kelsey G. Jencso; Brian L. McGlynn

2010-01-01

Stream DOC dynamics during snowmelt have been the focus of much research, and numerous DOC mobilization and delivery mechanisms from riparian and upland areas have been proposed. However, landscape structure controls on DOC export from riparian and upland landscape elements remains poorly understood. We investigated stream and groundwater DOC dynamics across three...

Dissolved Organic Carbon along the Louisiana coast from MODIS and MERIS satellite data

NASA Astrophysics Data System (ADS)

Chaichi Tehrani, N.; D'Sa, E. J.

2012-12-01

Dissolved organic carbon (DOC) plays a critical role in the coastal and ocean carbon cycle. Hence, it is important to monitor and investigate its the distribution and fate in coastal waters. Since DOC cannot be measured directly through satellite remote sensors, chromophoric dissolved organic matter (CDOM) as an optically active fraction of DOC can be used as an alternative proxy to trace DOC concentrations. Here, satellite ocean color data from MODIS, MERIS, and field measurements of CDOM and DOC were used to develop and assess CDOM and DOC ocean color algorithms for coastal waters. To develop a CDOM retrieval algorithm, empirical relationships between CDOM absorption coefficient at 412 nm (aCDOM(412)) and reflectance ratios Rrs(488)/Rrs(555) for MODIS and Rrs(510)/Rrs(560) for MERIS were established. The performance of two CDOM empirical algorithms were evaluated for retrieval of (aCDOM(412)) from MODIS and MERIS in the northern Gulf of Mexico. Further, empirical algorithms were developed to estimate DOC concentration using the relationship between in situ aCDOM(412) and DOC, as well as using the newly developed CDOM empirical algorithms. Accordingly, our results revealed that DOC concentration was strongly correlated to aCDOM (412) for summer and spring-winter periods (r2 = 0.9 for both periods). Then, using the aCDOM(412)-Rrs and the aCDOM(412)-DOC relationships derived from field measurements, a relationship between DOC-Rrs was established for MODIS and MERIS data. The DOC empirical algorithms performed well as indicated by match-up comparisons between satellite estimates and field data (R2=0.52 and 0.58 for MODIS and MERIS for summer period, respectively). These algorithms were then used to examine DOC distribution along the Louisiana coast.

Hydrological controls on DOC  :  nitrate resource stoichiometry in a lowland, agricultural catchment, southern UK

NASA Astrophysics Data System (ADS)

Heppell, Catherine M.; Binley, Andrew; Trimmer, Mark; Darch, Tegan; Jones, Ashley; Malone, Ed; Collins, Adrian L.; Johnes, Penny J.; Freer, Jim E.; Lloyd, Charlotte E. M.

2017-09-01

The role that hydrology plays in governing the interactions between dissolved organic carbon (DOC) and nitrogen in rivers draining lowland, agricultural landscapes is currently poorly understood. In light of the potential changes to the production and delivery of DOC and nitrate to rivers arising from climate change and land use management, there is a pressing need to improve our understanding of hydrological controls on DOC and nitrate dynamics in such catchments. We measured DOC and nitrate concentrations in river water of six reaches of the lowland river Hampshire Avon (Wiltshire, southern UK) in order to quantify the relationship between BFI (BFI) and DOC : nitrate molar ratios across contrasting geologies (Chalk, Greensand, and clay). We found a significant positive relationship between nitrate and BFI (p < 0. 0001), and a significant negative relationship between DOC and BFI (p < 0. 0001), resulting in a non-linear negative correlation between DOC : nitrate molar ratio and BFI. In the Hampshire Avon, headwater reaches which are underlain by clay and characterized by a more flashy hydrological regime are associated with DOC : nitrate ratios > 5 throughout the year, whilst groundwater-dominated reaches underlain by Chalk, with a high BFI have DOC : nitrate ratios in surface waters that are an order of magnitude lower (< 0.5). Our analysis also reveals significant seasonal variations in DOC : nitrate transport and highlights critical periods of nitrate export (e.g. winter in sub-catchments underlain by Chalk and Greensand, and autumn in drained, clay sub-catchments) when DOC : nitrate molar ratios are low, suggesting low potential for in-stream uptake of inorganic forms of nitrogen. Consequently, our study emphasizes the tight relationship between DOC and nitrate availability in agricultural catchments, and further reveals that this relationship is controlled to a great extent by the hydrological setting.

Algorithm Development and Validation for Satellite-Derived Distributions of DOC and CDOM in the US Middle Atlantic Bight

NASA Technical Reports Server (NTRS)

Mannino, Antonio; Russ, Mary E.; Hooker, Stanford B.

2007-01-01

In coastal ocean waters, distributions of dissolved organic carbon (DOC) and chromophoric dissolved organic matter (CDOM) vary seasonally and interannually due to multiple source inputs and removal processes. We conducted several oceanographic cruises within the continental margin of the U.S. Middle Atlantic Bight (MAB) to collect field measurements in order to develop algorithms to retrieve CDOM and DOC from NASA's MODIS-Aqua and SeaWiFS satellite sensors. In order to develop empirical algorithms for CDOM and DOC, we correlated the CDOM absorption coefficient (a(sub cdom)) with in situ radiometry (remote sensing reflectance, Rrs, band ratios) and then correlated DOC to Rrs band ratios through the CDOM to DOC relationships. Our validation analyses demonstrate successful retrieval of DOC and CDOM from coastal ocean waters using the MODIS-Aqua and SeaWiFS satellite sensors with mean absolute percent differences from field measurements of < 9 %for DOC, 20% for a(sub cdom)(355)1,6 % for a(sub cdom)(443), and 12% for the CDOM spectral slope. To our knowledge, the algorithms presented here represent the first validated algorithms for satellite retrieval of a(sub cdom) DOC, and CDOM spectral slope in the coastal ocean. The satellite-derived DOC and a(sub cdom) products demonstrate the seasonal net ecosystem production of DOC and photooxidation of CDOM from spring to fall. With accurate satellite retrievals of CDOM and DOC, we will be able to apply satellite observations to investigate interannual and decadal-scale variability in surface CDOM and DOC within continental margins and monitor impacts of climate change and anthropogenic activities on coastal ecosystems.

BIO-Plex Information System Concept

NASA Technical Reports Server (NTRS)

Jones, Harry; Boulanger, Richard; Arnold, James O. (Technical Monitor)

1999-01-01

This paper describes a suggested design for an integrated information system for the proposed BIO-Plex (Bioregenerative Planetary Life Support Systems Test Complex) at Johnson Space Center (JSC), including distributed control systems, central control, networks, database servers, personal computers and workstations, applications software, and external communications. The system will have an open commercial computing and networking, architecture. The network will provide automatic real-time transfer of information to database server computers which perform data collection and validation. This information system will support integrated, data sharing applications for everything, from system alarms to management summaries. Most existing complex process control systems have information gaps between the different real time subsystems, between these subsystems and central controller, between the central controller and system level planning and analysis application software, and between the system level applications and management overview reporting. An integrated information system is vitally necessary as the basis for the integration of planning, scheduling, modeling, monitoring, and control, which will allow improved monitoring and control based on timely, accurate and complete data. Data describing the system configuration and the real time processes can be collected, checked and reconciled, analyzed and stored in database servers that can be accessed by all applications. The required technology is available. The only opportunity to design a distributed, nonredundant, integrated system is before it is built. Retrofit is extremely difficult and costly.

Advanced Engineering Environment FY09/10 pilot project.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lamph, Jane Ann; Kiba, Grant W.; Pomplun, Alan R.

2010-06-01

The Advanced Engineering Environment (AEE) project identifies emerging engineering environment tools and assesses their value to Sandia National Laboratories and our partners in the Nuclear Security Enterprise (NSE) by testing them in our design environment. This project accomplished several pilot activities, including: the preliminary definition of an engineering bill of materials (BOM) based product structure in the Windchill PDMLink 9.0 application; an evaluation of Mentor Graphics Data Management System (DMS) application for electrical computer-aided design (ECAD) library administration; and implementation and documentation of a Windchill 9.1 application upgrade. The project also supported the migration of legacy data from existing corporatemore » product lifecycle management systems into new classified and unclassified Windchill PDMLink 9.0 systems. The project included two infrastructure modernization efforts: the replacement of two aging AEE development servers for reliable platforms for ongoing AEE project work; and the replacement of four critical application and license servers that support design and engineering work at the Sandia National Laboratories/California site.« less

76 FR 62431 - Notice of Issuance of Final Determination Concerning Certain Ethernet Switches

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-07

... importing 7 Series Ethernet switches assembled in China. The switches are designed to interconnect servers... country of origin of Arista's 7048, 7050, 7100, 7124, and 7500 series (``7 Series'') local area network..., packaged, and prepared for shipping. Arista's EOS TM (Extensible Operating System) software is designed to...

Providing the Persistent Data Storage in a Software Engineering Environment Using Java/COBRA and a DBMS

NASA Technical Reports Server (NTRS)

Dhaliwal, Swarn S.

1997-01-01

An investigation was undertaken to build the software foundation for the WHERE (Web-based Hyper-text Environment for Requirements Engineering) project. The TCM (Toolkit for Conceptual Modeling) was chosen as the foundation software for the WHERE project which aims to provide an environment for facilitating collaboration among geographically distributed people involved in the Requirements Engineering process. The TCM is a collection of diagram and table editors and has been implemented in the C++ programming language. The C++ implementation of the TCM was translated into Java in order to allow the editors to be used for building various functionality of the WHERE project; the WHERE project intends to use the Web as its communication back- bone. One of the limitations of the translated software (TcmJava), which militated against its use in the WHERE project, was persistent data management mechanisms which it inherited from the original TCM; it was designed to be used in standalone applications. Before TcmJava editors could be used as a part of the multi-user, geographically distributed applications of the WHERE project, a persistent storage mechanism must be built which would allow data communication over the Internet, using the capabilities of the Web. An approach involving features of Java, CORBA (Common Object Request Broker), the Web, a middle-ware (Java Relational Binding (JRB)), and a database server was used to build the persistent data management infrastructure for the WHERE project. The developed infrastructure allows a TcmJava editor to be downloaded and run from a network host by using a JDK 1.1 (Java Developer's Kit) compatible Web-browser. The aforementioned editor establishes connection with a server by using the ORB (Object Request Broker) software and stores/retrieves data in/from the server. The server consists of a CORBA object or objects depending upon whether the data is to be made persistent on a single server or multiple servers. The CORBA object providing the persistent data server is implemented using the Java progranu-ning language. It uses the JRB to store/retrieve data in/from a relational database server. The persistent data management system provides transaction and user management facilities which allow multi-user, distributed access to the stored data in a secure manner.

Lessons learned from the implementation of clinical messaging systems.

PubMed

Barnes, Mike

2007-10-11

The Regenstrief Institute has designed and implemented two clinical messaging systems over the past six years, both called DOCS4DOCS. These systems receive HL7 messages from data sources and deliver results to clinicians via the web, fax, or as HL7 directed to an EMR. This paper focuses on some of the lessons we have learned, both good and bad. We discuss important issues in clinical messaging including provider mapping, document delivery and duplicate prevention, creating uniform HL7 outbound feeds, user authentication, the problems of allowing Active-X controls, why automatic printing of documents is not important although a frequently requested feature, and assorted other pearls of wisdom we have acquired.

The Age of Terrestrial Carbon Export and Rainfall Intensity in a Temperate River Headwater System

NASA Astrophysics Data System (ADS)

Tittel, J.; Büttner, O.; Freier, K.; Heiser, A.; Sudbrack, R.; Ollesch, G.

2013-12-01

Riverine dissolved organic carbon (DOC) supports the production of estuaries and coastal ecosystems, constituting one of the most actively recycled pools of the global carbon cycle. A substantial proportion of DOC entering oceans is highly aged, but its origins remain unclear. Significant fluxes of old DOC have never been observed in temperate headwaters where terrestrial imports take place. Here, we studied the radiocarbon age of DOC in three streams draining forested headwater catchments of the river Mulde (Ore Mountains, Germany). We found modern DOC at moderately dry and moderately wet conditions as well as at high discharges during snowmelt. Old groundwater carbon contributed to stream DOC during the summer drought, although the yield was negligible. However, in a four-week summer precipitation event DOC aged at between 160 and 270 years was delivered into the watershed. In one stream, the DOC was modern but depleted in radiocarbon compared to other hydrological conditions. The yield was substantial and corresponded to 20 to 52% of the annual DOC yields in wet and dry years, respectively. Time-integrating samples of a downstream reservoir also revealed modern DOC ages under moderate conditions and old DOC from the rainfall event. Earlier studies suggested that increasing precipitation escalates the contribution of modern DOC from topsoil layers to surface runoff. Our results demonstrate a step change occurring if rainfall intensities increase and become extreme; then the consequences lead to the mobilization of old carbon in exceptionally high concentrations. The runoff/precipitation ratios of rainfall events indicated that during extreme events upland areas of the catchments were hydrologically connected to the stream and upland DOC was activated. Furthermore, the analysis of long-term data suggested that the DOC export in extreme precipitation events added to the annual yield and was not compensated for by lower exports in remaining periods. We conclude that climate change, along with additional processes associated with human activities, channels old soil carbon into more rapidly cycled carbon pools of the hydrosphere.

The influence of dissolved organic carbon on bacterial phosphorus uptake and bacteria-phytoplankton dynamics in two Minnesota lakes

USGS Publications Warehouse

Stets, E.G.; Cotner, J.B.

2008-01-01

The balance of production in any ecosystem is dependent on the flow of limiting nutrients into either the autotrophic or heterotrophic components of the food web. To understand one of the important controls on the flow of inorganic nutrients between phytoplankton and bacterioplankton in lakes, we manipulated dissolved organic carbon (DOC) in two lakes of different trophic status. We hypothesized that labile DOC additions would increase bacterial phosphorus (P) uptake and decrease the response of phytoplankton to nutrient additions. Supplemental nutrients and carbon (C), nitrogen (N, 1.6 ??mol NH4Cl L-1 d-1), P (0.1 ??mol KH 2PO4 L-1 d-1), and DOC (glucose, 15 ??mol C L-1 d-1) were added twice daily to 8-liter experimental units. We tested the effect of added DOC on chlorophyll concentration, bacterial production, biomass, and P uptake using size-fractionated 33P-PO4 uptake. In the oligotrophic lake, DOC additions stimulated bacterial production and increased bacterial biomass-specific P uptake. Bacteria consumed added DOC, and chlorophyll concentrations were significantly lower in carboys receiving DOC additions. In the eutrophic lake, DOC additions had less of a stimulatory effect on bacterial production and biomass-specific P uptake. DOC accumulated over the time period, and there was little evidence for a DOC-induced decrease in phytoplankton biomass. Bacterial growth approached the calculated ??max and yet did not accumulate biomass, indicating significant biomass losses, which may have constrained bacterial DOC consumption. Excess bacterial DOC consumption in oligotrophic lakes may result in greater bacterial P affinity and enhanced nutrient uptake by the heterotrophic compartment of the food web. On the other hand, constraints on bacterial biomass accumulation in eutrophic lakes, from either viral lysis or bacterial grazing, can allow labile DOC to accumulate, thereby negating the effect of excess DOC on the planktonic food web. ?? 2008, by the American Society of Limnology and Oceanography, Inc.

Impact of wetland decline on decreasing dissolved organic carbon concentrations along the Mississippi River continuum

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duan, Shuiwang; He, Yuxiang; Kaushal, Sujay S.

Prior to discharging to the ocean, large rivers constantly receive inputs of dissolved organic carbon (DOC) from tributaries or fringing floodplains and lose DOC via continuous in situ processing along distances that span thousands of kilometers. Current concepts predicting longitudinal changes in DOC mainly focus on in situ processing or exchange with fringing floodplain wetlands, while effects of heterogeneous watershed characteristics are generally ignored. We analyzed results from a 17-year time-series of DOC measurements made at seven sites and three expeditions along the entire Mississippi River main channel with DOC measurements made every 17 km. The results show a clearmore » downstream decrease in DOC concentrations that was consistent throughout the entire study period. Downstream DOC decreases were primarily (~63–71%) a result of constant dilutions by low-DOC tributary water controlled by watershed wetland distribution, while in situ processing played a secondary role. We estimate that from 1780 to 1980 wetland loss due to land-use alterations caused a ca. 58% decrease in in DOC concentrations in the tributaries of the Mississippi River. DOC reductions caused by watershed wetland loss likely impacted the capacity for the river to effectively remove nitrogen via denitrification, which can further exacerbate coastal hypoxia. Lastly, these findings highlight the importance of watershed wetlands in regulating DOC longitudinally along the headland to ocean continuum of major rivers.« less

Impact of wetland decline on decreasing dissolved organic carbon concentrations along the Mississippi River continuum

DOE PAGES

Duan, Shuiwang; He, Yuxiang; Kaushal, Sujay S.; ...

2017-01-09

Prior to discharging to the ocean, large rivers constantly receive inputs of dissolved organic carbon (DOC) from tributaries or fringing floodplains and lose DOC via continuous in situ processing along distances that span thousands of kilometers. Current concepts predicting longitudinal changes in DOC mainly focus on in situ processing or exchange with fringing floodplain wetlands, while effects of heterogeneous watershed characteristics are generally ignored. We analyzed results from a 17-year time-series of DOC measurements made at seven sites and three expeditions along the entire Mississippi River main channel with DOC measurements made every 17 km. The results show a clearmore » downstream decrease in DOC concentrations that was consistent throughout the entire study period. Downstream DOC decreases were primarily (~63–71%) a result of constant dilutions by low-DOC tributary water controlled by watershed wetland distribution, while in situ processing played a secondary role. We estimate that from 1780 to 1980 wetland loss due to land-use alterations caused a ca. 58% decrease in in DOC concentrations in the tributaries of the Mississippi River. DOC reductions caused by watershed wetland loss likely impacted the capacity for the river to effectively remove nitrogen via denitrification, which can further exacerbate coastal hypoxia. Lastly, these findings highlight the importance of watershed wetlands in regulating DOC longitudinally along the headland to ocean continuum of major rivers.« less

Determination of an organic-acid analog of DOC for use in copper toxicity studies on salmonids

DOE Office of Scientific and Technical Information (OSTI.GOV)

MacRae, R.K.; Meyer, J.S.; Hansen, J.A.

1995-12-31

Concentrations of dissolved copper in streams draining mine sites often exceed concentrations shown to cause acute and chronic mortality in salmonids. However, toxicity and impaired behaviors may be modified by dissolved organic carbon (DOC) and other inorganic components present in the site water. The effects of DOC on copper speciation, and thus bioavailability and toxicity, were determined by titrating stream waters with copper, using a cupric ion-specific electrode to detect free copper concentrations. Effects of various competing cations (e.g., Ca{sup +2}, Co{sup +2}) on copper-DOC binding were also evaluated. Titration results were evaluated using Scatchard and non-linear regression analyses tomore » quantify the strength and capacity of copper-DOC binding. Inorganic speciation was determined using the geochemical model MINEQL{sup +}. Results of these titrations indicated the presence of two or three distinct copper binding components in site water DOC. Three commercially available organic acids where then chosen to mimic the binding characteristics of natural DOC. This DOC-analog was used successfully in fish toxicity studies to evaluate the influence of DOC on copper bioavailability. Geochemical models were developed to predict copper speciation in both laboratory test waters and site waters, for any typical combination of water chemistry parameters (pH, alkalinity, [DOC], etc.). A combined interpretation of fish toxicity and modeling results indicate that some DOC-bound copper was bioavailable.« less

77 FR 39184 - Grapes Grown in Designated Area of Southeastern California; Increased Assessment Rate

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-02

... Service 7 CFR Part 925 [Doc. No. AMS-FV-11-0090; FV12-925-1 PR] Grapes Grown in Designated Area of... Grape Administrative Committee (Committee) for the 2012 and subsequent fiscal periods from $0.0125 to $0.0150 per 18- pound lug of grapes handled. The Committee locally administers the marketing order, which...

76 FR 7119 - Grapes Grown in Designated Area of Southeastern California; Increased Assessment Rate

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-09

... Service 7 CFR Part 925 [Doc. No. AMS-FV-10-0104; FV11-925-1 PR] Grapes Grown in Designated Area of... Grape Administrative Committee (Committee) for the 2011 and subsequent fiscal periods from $0.01 to $0.0125 per 18- pound lug of grapes handled. The Committee locally administers the marketing order, which...

Transformations and Fates of Terrigenous Dissolved Organic Matter in River-influenced Ocean Margins

NASA Astrophysics Data System (ADS)

Fichot, Cedric G.

Rivers contribute about 0.25 Pg of terrigenous dissolved organic carbon (tDOC) to the ocean each year. The fate and transformations of this material have important ramifications for the metabolic state of the ocean, air-sea CO2 exchange, and the global carbon cycle. Stable isotopic compositions and terrestrial biomarkers suggest tDOC must be efficiently mineralized in ocean margins. Nonetheless, the extent of tDOC mineralization in these environments remains unknown, as no quantitative estimate is available. The complex interplay of biogeochemical and physical processes in these systems compounded by the limited practicality of chemical proxies (organic biomarkers, isotopic compositions) make the quantification of tDOC mineralization in these dynamic systems particularly challenging. In this dissertation, new optical proxies were developed (Chapters 1 and 2) and facilitated the first quantitative assessment of tDOC mineralization in a dynamic river-influenced ocean margin (Chapter 3) and the monitoring of continental runoff distributions in the coastal ocean using remote sensing (Chapter 4). The optical properties of chromophoric dissolved organic matter (CDOM) were used as optical proxies for dissolved organic carbon concentration ([DOC]) and %tDOC. In both proxies, the CDOM spectral slope coefficient ( S275-295) was exploited for its informative properties on the chemical nature and composition of dissolved organic matter. In the first proxy, a strong relationship between S275-295 and the ratio of CDOM absorption to [DOC] facilitated accurate retrieval (+/- 4%) of [DOC] from CDOM. In the second proxy, the existence of a strong relationship between S275-295 and the DOC-normalized lignin yield facilitated the estimation of the %tDOC from S 275-295. Using the proxies, the tDOC concentration can be retrieved solely from CDOM absorption coefficients (lambda = 275-295 nm) in river-influenced ocean margins. The practicality of optical proxies facilitated the calculation of tDOC mineralization rates on the Louisiana shelf. Seasonal tDOC mass balances for the shelf revealed that between 26% (winter) and 71% (summer) of the mixed layer tDOC is mineralized during its residence on the shelf. Independent approaches further indicated biomineralization accounts for 60% of the tDOC mineralization whereas photomineralization contributes only 8%. The remaining 32% was attributed to the coupled photo-biomineralization. On an annual basis, our results indicated ˜40% of the tDOC discharged by the Mississippi and Atchafalaya rivers to the Louisiana shelf (˜1 Tg tDOC) is mineralized within 2 to 3 months. This extensive mineralization on the shelf is direct evidence ocean margins act as efficient filters of tDOC between the land and ocean. Finally, the amenability of S275-295 to ocean color remote sensing was demonstrated, and facilitates the real-time, synoptic monitoring of tDOC and freshwater runoff in coastal waters. Implementation of this approach provided the first pan-Arctic distributions of tDOC and continental runoff in surface polar waters, and will help understand the manifestations of climate change in this remote region.

Concentrations and characteristics of organic carbon in surface water in Arizona: Influence of urbanization

USGS Publications Warehouse

Westerhoff, P.; Anning, D.

2000-01-01

Dissolved (DOC) and total (TOC) organic carbon concentrations and compositions were studied for several river systems in Arizona, USA. DOC composition was characterized by ultraviolet and visible absorption and fluorescence emission (excitation wavelength of 370 nm) spectra characteristics. Ephemeral sites had the highest DOC concentrations, and unregulated perennial sites had lower concentrations than unregulated intermittent sites, regulated sites, and sites downstream from wastewater-treatment plants (p < 0.05). Reservoir outflows and wastewater-treatment plant effluent were higher in DOC concentration (p < 0.05) and exhibited less variability in concentration than inflows to the reservoirs. Specific ultraviolet absorbance values at 254 nm were typically less than 2 m-1(milligram DOC per liter)-1 and lower than values found in most temperate-region rivers, but specific ultraviolet absorbance values increased during runoff events. Fluorescence measurements indicated that DOC in desert streams typically exhibit characteristics of autochthonous sources; however, DOC in unregulated upland rivers and desert streams experienced sudden shifts from autochthonous to allochthonous sources during runoff events. The urban water system (reservoir systems and wastewater-treatment plants) was found to affect temporal variability in DOC concentration and composition. (C) 2000 Elsevier Science B.V.Dissolved (DOC) and total (TOC) organic carbon concentrations and compositions were studied for several river systems in Arizona, USA. DOC composition was characterized by ultraviolet and visible absorption and fluorescence emission (excitation wavelength of 370 nm) spectra characteristics. Ephemeral sites had the highest DOC concentrations, and unregulated perennial sites had lower concentrations than unregulated intermittent sites, regulated sites, and sites downstream from wastewater-treatment plants (p<0.05). Reservoir outflows and wastewater-treatment plant effluent were higher in DOC concentration (p<0.05) and exhibited less variability in concentration than inflows to the reservoirs. Specific ultraviolet absorbance values at 254 nm were typically less than 2 m-1(milligram DOC per liter)-1 and lower than values found in most temperate-region rivers, but specific ultraviolet absorbance values increased during runoff events. Fluorescence measurements indicated that DOC in desert streams typically exhibit characteristics of autochthonous sources; however, DOC in unregulated upland rivers and desert streams experienced sudden shifts from autochthonous to allochthonous sources during runoff events. The urban water system (reservoir systems and wastewater-treatment plants) was found to affect temporal variability in DOC concentration and composition.The influence of urbanization, becoming increasingly common in arid regions, on dissolved organic carbon (DOC) concentrations in surface water resources was studied. DOC concentration and composition, seasonal watershed runoff events, streamflow variations, water management practices, and urban infrastructure in several Arizona watersheds were monitored. Ephemeral sites had the highest DOC levels, and unregulated perennial sites and lower concentrations than unregulated intermittent sites, regulated sites, and sites downstream from wastewater treatment plants. Reservoir outflows and wastewater treatment plant effluent had higher and less variable DOC concentrations than inflows to reservoirs. UV absorbance values, fluorescence measurements, and other indicators suggest that urban water systems (reservoirs and wastewater treatment plants) affect temporal variability in DOC concentration and composition.

75 FR 39054 - Agency Information Collection Activities: Submission for the Office of Management and Budget (OMB...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-07

... feedback to the industry. These forms are designed to provide the information necessary for engineering... the NRC worldwide Web site: http://www.nrc.gov/public-involve/doc-comment/omb/index.html . The...

75 FR 3197 - Tri-County Advisory Committee Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2010-01-20

..., 2010, from 5 p.m. until 8 p.m. ADDRESSES: The meeting will be held at the USDA building located 1002.... Myers, Designated Federal Official. [FR Doc. 2010-812 Filed 1-19-10; 8:45 am] BILLING CODE 3410-11-M ...

Advanced Subsonic Airplane Design and Economic Studies

NASA Technical Reports Server (NTRS)

Liebeck, Robert H.; Andrastek, Donald A.; Chau, Johnny; Girvin, Raquel; Lyon, Roger; Rawdon, Blaine K.; Scott, Paul W.; Wright, Robert A.

1995-01-01

A study was made to examine the effect of advanced technology engines on the performance of subsonic airplanes and provide a vision of the potential which these advanced engines offered. The year 2005 was selected as the entry-into-service (EIS) date for engine/airframe combination. A set of four airplane classes (passenger and design range combinations) that were envisioned to span the needs for the 2005 EIS period were defined. The airframes for all classes were designed and sized using 2005 EIS advanced technology. Two airplanes were designed and sized for each class: one using current technology (1995) engines to provide a baseline, and one using advanced technology (2005) engines. The resulting engine/airframe combinations were compared and evaluated on the basis on sensitivity to basic engine performance parameters (e.g. SFC and engine weight) as well as DOC+I. The advanced technology engines provided significant reductions in fuel burn, weight, and wing area. Average values were as follows: reduction in fuel burn = 18%, reduction in wing area = 7%, and reduction in TOGW = 9%. Average DOC+I reduction was 3.5% using the pricing model based on payload-range index and 5% using the pricing model based on airframe weight. Noise and emissions were not considered.

Survey Software Evaluation

DTIC Science & Technology

2009-01-01

Oracle 9i, 10g  MySQL  MS SQL Server MS SQL Server Operating System Supported Windows 2003 Server  Windows 2000 Server (32 bit...WebStar (Mac OS X)  SunOne Internet Information Services (IIS) Database Server Supported MS SQL Server  MS SQL Server  Oracle 9i, 10g...challenges of Web-based surveys are: 1) identifying the best Commercial Off the Shelf (COTS) Web-based survey packages to serve the particular

Long-term trends in dissolved iron and DOC concentration linked to nitrate depletion in riparian soils

NASA Astrophysics Data System (ADS)

Musolff, Andreas; Selle, Benny; Fleckenstein, Jan H.; Oosterwoud, Marieke R.; Tittel, Jörg

2016-04-01

The instream concentrations of dissolved organic carbon (DOC) are rising in many catchments of the northern hemisphere. Elevated concentrations of DOC, mainly in the form of colored humic components, increase efforts and costs of drinking water purification. In this study, we evaluated a long-term dataset of 110 catchments draining into German drinking water reservoirs in order to assess sources of DOC and drivers of a potential long-term change. The average DOC concentrations across the wide range of different catchments were found to be well explained by the catchment's topographic wetness index. Higher wetness indices were connected to higher average DOC concentrations, which implies that catchments with shallow topography and pronounced riparian wetlands mobilize more DOC. Overall, 37% of the investigated catchments showed a significant long-term increase in DOC concentrations, while 22% exhibited significant negative trends. Moreover, we found that increasing trends in DOC were positively correlated to trends in dissolved iron concentrations at pH≤6 due to remobilization of DOC previously sorbed to iron minerals. Both, increasing trends in DOC and dissolve iron were found to be connected to decreasing trends and low concentrations of nitrate (below ~6 mg/L). This was especially observed in forested catchments where atmospheric N-depositions were the major source for nitrate availability. In these catchments, we also found long-term increases of phosphate concentrations. Therefore, we argue that dissolved iron, DOC and phosphate were jointly released under iron-reducing conditions when nitrate as a competing electron acceptor was too low in concentrations to prevent the microbial iron reduction. In contrast, we could not explain the observed increasing trends in DOC, iron and phosphate concentrations by the long-term trends of pH, sulfate or precipitation. Altogether this study gives strong evidence that both, source and long-term increases in DOC are primarily controlled by riparian wetland soils within the catchments. Here, the achievement of a long-term reduction in nitrogen deposition may in turn lead to a more pronounced iron reduction and a subsequent release of DOC and other iron-bound substances such as phosphate.

Seasonal variations in production and consumption rates of dissolved organic carbon in an organic-rich coastal sediment

NASA Astrophysics Data System (ADS)

Alperin, M. J.; Albert, D. B.; Martens, C. S.

1994-11-01

Dissolved organic carbon (DOC) concentrations in anoxic marine sediments are controlled by at least three processes: (1) production of nonvolatile dissolved compounds, such as peptides and amino acids, soluble saccharides and fatty acids, via hydrolysis of particulate organic carbon (POC). (2) conversion of these compounds to volatile fatty acids and alcohols by fermentative bacteria. (3) consumption of volatile fatty acids and alcohols by terminal bacteria, such as sulfate reducers and methanogens. We monitored seasonal changes in concentration profiles of total DOC, nonacid-volatile (NAV) DOC and acid-volatile (AV) DOC in anoxic sediment from Cape Lookout Bight, North Carolina, USA, in order to investigate the factors that control seasonal variations in rates of hydrolysis, fermentation, and terminal metabolism. During the winter months, DOC concentrations increased continuously from 0.2 mM in the bottomwater to ~4 mM at a depth of 36 cm in the sediment column. During the summer, a large DOC maximum developed between 5 and 20 cm, with peak concentrations approaching 10 mM. The mid-depth summertime maximum was driven by increases in both NAV- and AV-DOC concentrations. Net NAV-DOC reaction rates were estimated by a diagenetic model applied to NAV-DOC concentration profiles. Depth-integrated production rates of NAV-DOC increased from February through July, suggesting that net rates of POC hydrolysis during this period are controlled by temperature. Net consumption of NAV-DOC during the late summer and early fall suggests reduced gross NAV-DOC production rates, presumably due to a decline in the availability of labile POC. A distinct subsurface peak in AV-DOC concentration developed during the late spring, when the sulfate depletion depth shoaled from 25 to 10 cm. We hypothesize that the AV-DOC maximum results from a decline in consumption by sulfate-reducing bacteria (due to sulfate limitation) and a lag in the development of an active population of methanogenic bacteria. A diagenetic model that incorporates a lag period in the sulfate reducer-methanogen transition successfully simulates the timing, magnitude, depth and shape of the AV-DOC peak.

Controls on dissolved organic carbon quantity and chemical character in temperate rivers of North America

USGS Publications Warehouse

Hanley, Kevin W.; Wollheim, Wilfred M.; Salisbury, Joseph; Huntington, Thomas G.; Aiken, George R.

2013-01-01

Understanding the processes controlling the transfer and chemical composition of dissolved organic carbon (DOC) in freshwater systems is crucial to understanding the carbon cycle and the effects of DOC on water quality. Previous studies have identified watershed-scale controls on bulk DOC flux and concentration among small basins but fewer studies have explored controls among large basins or simultaneously considered the chemical composition of DOC. Because the chemical character of DOC drives riverine biogeochemical processes such as metabolism and photodegradation, accounting for chemical character in watershed-scale studies will improve the way bulk DOC variability in rivers is interpreted. We analyzed DOC quantity and chemical character near the mouths of 17 large North American rivers, primarily between 2008 and 2010, and identified watershed characteristics that controlled variability. We quantified DOC chemical character using both specific ultraviolet absorbance at 254 nm (SUVA254) and XAD-resin fractionation. Mean DOC concentration ranged from 2.1 to 47 mg C L−1 and mean SUVA254 ranged from 1.3 to 4.7 L mg C−1 m−1. We found a significant positive correlation between basin wetland cover and both bulk DOC concentration (R2 = 0.78; p < 0.0001) and SUVA254 (R2 = 0.91; p < 0.0001), while other land use characteristics were not correlated. The strong wetland relationship with bulk DOC concentration is similar to that found by others in small headwater catchments. However, two watersheds with extremely long surface water residence times, the Colorado and St. Lawrence, diverged from this wetland relationship. These results suggest that the role of riverine processes in altering the terrestrial DOC signal at the annual scale was minimal except in river systems with long surface water residence times. However, synoptic DOC sampling of both quantity and character throughout river networks will be needed to more rigorously test this finding. The inclusion of DOC chemical character will be vital to achieving a more complete understanding of bulk DOC dynamics in large river systems.

Energy consumption characteristics of transports using the prop-fan concept

NASA Technical Reports Server (NTRS)

1976-01-01

The fuel saving and economic potentials of the prop-fan high-speed propeller concept were evaluated for twin-engine commercial transport airplanes designed for 3333.6 km range, 180 passengers, and Mach 0.8 cruise. A fuel saving of 9.7% at the design range was estimated for a prop-fan airplane having wing-mounted engines, while a 5.8% saving was estimated for a design having the engines mounted on the aft body. The fuel savings and cost were found to be sensitive to the propeller noise level and to aerodynamic drag effects due to wing-slipstream interaction. Uncertainties in these effects could change the fuel savings as much as + or - 50%. A modest improvement in direct operating cost (DOC) was estimated for the wing-mounted prop-fan at current fuel prices. This improvement could become substantial in the event of further relative increases in the price of oil. The improvement in DOC requires the achievement of the nominal fuel saving and reductions in propeller and gearbox maintenance costs relative to current experience.

Absorption features of chromophoric dissolved organic matter (CDOM) and tracing implication for dissolved organic carbon (DOC) in Changjiang Estuary, China

NASA Astrophysics Data System (ADS)

Zhang, X. Y.; Chen, X.; Deng, H.; Du, Y.; Jin, H. Y.

2013-07-01

Chromophoric dissolved organic matter (CDOM) represents the light absorbing fraction of dissolved organic carbon (DOC). Studies have shown that the optical properties of CDOM can be used to infer the distribution and diffusion characteristics of DOC in the estuary and coastal zone. The inversion of DOC concentrations from remote sensing has been implemented in certain regions. In this study we investigate the potential of tracing DOC from CDOM by the measurement of DOC, absorption spectrum of CDOM, Chla concentration, suspended sediment (SS), and salinity from cruises in different seasons around the Changjiang estuary. Our results show that around the Changjiang estuary the absorption coefficients of CDOM in general have the similar spatial and temporal characteristics as that of DOC, but the strength of the correlation between CDOM and DOC varies locally and seasonally. The input of pollutants from outside the estuary, the bloom of phytoplankton in spring, re-suspension of deposited sediment, and light bleaching all contribute to the local and seasonal variation of the correlation between DOC and CDOM. An inversion model for the determination of DOC from CDOM is established, but the stability of model parameters and its application in different environments need further study. We find that relative to the absorption coefficient of CDOM, the fitted parameters of the absorption spectrum of DOM are better indictors for the composition of DOC. In addition, it is found that the terrestrial input of DOC to Changjiang estuary is a typical two-stage dilution process instead of a linear diffusion process.

Modeling the production, decomposition, and transport of dissolved organic carbon in boreal soils

USGS Publications Warehouse

Fan, Zhaosheng; Neff, Jason C.; Wickland, Kimberly P.

2010-01-01

The movement of dissolved organic carbon (DOC) through boreal ecosystems has drawn increased attention because of its potential impact on the feedback of OC stocks to global environmental change in this region. Few models of boreal DOC exist. Here we present a one-dimensional model with simultaneous production, decomposition, sorption/desorption, and transport of DOC to describe the behavior of DOC in the OC layers above the mineral soils. The field-observed concentration profiles of DOC in two moderately well-drained black spruce forest sites (one with permafrost and one without permafrost), coupled with hourly measured soil temperature and moisture, were used to inversely estimate the unknown parameters associated with the sorption/desorption kinetics using a global optimization strategy. The model, along with the estimated parameters, reasonably reproduces the concentration profiles of DOC and highlights some important potential controls over DOC production and cycling in boreal settings. The values of estimated parameters suggest that humic OC has a larger potential production capacity for DOC than fine OC, and most of the DOC produced from fine OC was associated with instantaneous sorption/desorption whereas most of the DOC produced from humic OC was associated with time-dependent sorption/desorption. The simulated DOC efflux at the bottom of soil OC layers was highly dependent on the component and structure of the OC layers. The DOC efflux was controlled by advection at the site with no humic OC and moist conditions and controlled by diffusion at the site with the presence of humic OC and dry conditions.

Hydrologic and forest management controls on DOC dynamics in the small watersheds of the H.J. Andrews Experimental Forest, OR

NASA Astrophysics Data System (ADS)

Lajtha, K.; Jones, J. A.

2016-12-01

Dissolved organic carbon (DOC) export from hillslopes to streams is an important component of the carbon cycle of a catchment and may be a critical source of energy for the aquatic food web in receiving waters. Using a long-term record of DOC and other dissolved nutrients and elements from paired watersheds from the H.J. Andrews Experimental Forest in Oregon, we explored hydrologic, climatic, and land-use controls on seasonal and inter-annual patterns of DOC flux in a seasonally dry ecosystem. Seasonal patterns of DOC flux demonstrated source limitations to DOC export, with DOC concentrations highest immediately following the first rains after a dry summer, and lowest after winter rains. In contrast, more geochemically-controlled elements showed simple dilution-concentration patterns with no seasonal hysteresis. Inter-annual patterns of DOC flux, however, did not provide evidence of source limitation, with DOC flux within a watershed tightly correlated to total discharge but not temperature. Among watersheds, forest harvest, even over 50 years ago, significantly reduced DOC flux but not fluxes of other elements including N; this response was linked to the loading of coarse woody debris to the forest floor. Chemical fingerprinting of DOC revealed that old-growth watersheds had higher fluxes of DOC characteristic of forest floor organic materials, likely delivered to streams through more surficial preferential flow pathways not subject to microbial alteration, respiration, or sorption losses. Taken together these results suggest that the biogeochemical composition of forested streams reflects both current hydrologic patterns and also processes that occurred many decades ago within the catchment.

Hydrological processes and permafrost regulate magnitude, source and chemical characteristics of dissolved organic carbon export in a peatland catchment of northeastern China

NASA Astrophysics Data System (ADS)

Guo, Yuedong; Song, Changchun; Tan, Wenwen; Wang, Xianwei; Lu, Yongzheng

2018-02-01

Permafrost thawing in peatlands has the potential to alter the catchment export of dissolved organic carbon (DOC), thus influencing the carbon balance and cycling in linked aquatic and ocean ecosystems. Peatlands along the southern margins of the Eurasian permafrost are relatively underexplored despite the considerable risks associated with permafrost degradation due to climate warming. This study examined dynamics of DOC export from a permafrost peatland catchment located in northeastern China during the 2012 to 2014 growing seasons. The estimated annual DOC loads varied greatly between 3211 and 19 022 kg yr-1, with a mean DOC yield of 4.7 g m-2 yr-1. Although the estimated DOC yield was in the lower range compared with other permafrost regions, it was still significant for the net carbon balance in the studied catchment. There were strong linkages between daily discharge and DOC concentrations in both wet and dry years, suggesting a transport-limited process of DOC delivery from the catchment. Discharge explained the majority of both seasonal and interannual variations of DOC concentrations, which made annual discharge a good indicator of total DOC load from the catchment. As indicated by three fluorescence indices, DOC source and chemical characteristics tracked the shift of flow paths during runoff processes closely. Interactions between the flow path and DOC chemical characteristics were greatly influenced by the seasonal thawing of the soil active layer. The deepening of the active layer due to climate warming likely increases the proportion of microbial-originated DOC in baseflow discharge.

On the Use of Ocean Color Remote Sensing to Measure the Transport of Dissolved Organic Carbon by the Mississippi River Plume

NASA Technical Reports Server (NTRS)

DelCastillo, Carlos E.; Miller, Richard L.

2007-01-01

We investigated the use of ocean color remote sensing to measure transport of dissolved organic carbon (DOC) by the Mississippi River to the Gulf of Mexico. From 2000 to 2005 we recorded surface measurements of DOC, colored dissolved organic matter (CDOM), salinity, and water-leaving radiances during five cruises to the Mississippi River Plume. These measurements were used to develop empirical relationships to derive CDOM, DOC, and salinity from monthly composites of SeaWiFS imagery collected from 1998 through 2005. We used river flow data and a two-end-member mixing model to derive DOC concentrations in the river end-member, river flow, and DOC transport using remote sensing data. We compared our remote sensing estimates of river flow and DOC transport with data collected by the United States Geological Survey (USGS) from 1998 through 2005. Our remote sensing estimates of river flow and DOC transport correlated well (r2 0.70) with the USGS data. Our remote sensing estimates and USGS field data showed low variability in DOC concentrations in the river end-member (7-11%), and high seasonal variability in river flow (50%). Therefore, changes in river flow control the variability in DOC transport, indicating that the remote sensing estimate of river flow is the most critical element of our DOC transport measurement. We concluded that it is possible to use this method to estimate DOC transport by other large rivers if there are data on the relationship between CDOM, DOC, and salinity in the river plume.

panMetaDocs, eSciDoc, and DOIDB - an infrastructure for the curation and publication of file-based datasets for 'GFZ Data Services'

NASA Astrophysics Data System (ADS)

Ulbricht, Damian; Elger, Kirsten; Bertelmann, Roland; Klump, Jens

2016-04-01

With the foundation of DataCite in 2009 and the technical infrastructure installed in the last six years it has become very easy to create citable dataset DOIs. Nowadays, dataset DOIs are increasingly accepted and required by journals in reference lists of manuscripts. In addition, DataCite provides usage statistics [1] of assigned DOIs and offers a public search API to make research data count. By linking related information to the data, they become more useful for future generations of scientists. For this purpose, several identifier systems, as ISBN for books, ISSN for journals, DOI for articles or related data, Orcid for authors, and IGSN for physical samples can be attached to DOIs using the DataCite metadata schema [2]. While these are good preconditions to publish data, free and open solutions that help with the curation of data, the publication of research data, and the assignment of DOIs in one software seem to be rare. At GFZ Potsdam we built a modular software stack that is made of several free and open software solutions and we established 'GFZ Data Services'. 'GFZ Data Services' provides storage, a metadata editor for publication and a facility to moderate minted DOIs. All software solutions are connected through web APIs, which makes it possible to reuse and integrate established software. Core component of 'GFZ Data Services' is an eSciDoc [3] middleware that is used as central storage, and has been designed along the OAIS reference model for digital preservation. Thus, data are stored in self-contained packages that are made of binary file-based data and XML-based metadata. The eSciDoc infrastructure provides access control to data and it is able to handle half-open datasets, which is useful in embargo situations when a subset of the research data are released after an adequate period. The data exchange platform panMetaDocs [4] makes use of eSciDoc's REST API to upload file-based data into eSciDoc and uses a metadata editor [5] to annotate the files with metadata. The metadata editor has a user-friendly interface with nominal lists, extensive explanations, and an interactive mapping tool to provide assistance to scientists describing the data. It is possible to deposit metadata templates to fill certain fields with default values. The metadata editor generates metadata in the schemas ISO19139, NASA GCMD DIF, and DataCite and could be extended for other schemas. panMetaDocs is able to mint dataset DOIs through DOIDB, which is our component to moderate dataset DOIs issued through 'GFZ Data Services'. DOIDB accepts metadata in the schemas ISO19139, DIF, and DataCite. In addition, DOIDB provides an OAI-PMH interface to disseminate all deposited metadata to data portals. The presentation of datasets on DOI landing pages is done though XSLT stylesheet transformation of the XML-based metadata. The landing pages have been designed to meet needs of scientists. We are able to render the metadata to different layouts. Furthermore, additional information about datasets and publications is assembled into the webpage by querying public databases on the internet. The work presented here will focus on technical details of the software stack. [1] http://stats.datacite.org [2] http://www.dlib.org/dlib/january11/starr/01starr.html [3] http://www.escidoc.org [4] http://panmetadocs.sf.net [5] http://github.com/ulbricht

Measurement of Energy Performances for General-Structured Servers

NASA Astrophysics Data System (ADS)

Liu, Ren; Chen, Lili; Li, Pengcheng; Liu, Meng; Chen, Haihong

2017-11-01

Energy consumption of servers in data centers increases rapidly along with the wide application of Internet and connected devices. To improve the energy efficiency of servers, voluntary or mandatory energy efficiency programs for servers, including voluntary label program or mandatory energy performance standards have been adopted or being prepared in the US, EU and China. However, the energy performance of servers and testing methods of servers are not well defined. This paper presents matrices to measure the energy performances of general-structured servers. The impacts of various components of servers on their energy performances are also analyzed. Based on a set of normalized workload, the author proposes a standard method for testing energy efficiency of servers. Pilot tests are conducted to assess the energy performance testing methods of servers. The findings of the tests are discussed in the paper.

Merlot Design

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahern, S D

2003-06-10

We describe Merlot, a system for delivery of digital imagery over high speed networks. We describe various use cases, the client/server interaction, and the image and network codecs. We also describe some possible applications using Merlot and future work.

THttpServer class in ROOT

NASA Astrophysics Data System (ADS)

Adamczewski-Musch, Joern; Linev, Sergey

2015-12-01

The new THttpServer class in ROOT implements HTTP server for arbitrary ROOT applications. It is based on Civetweb embeddable HTTP server and provides direct access to all objects registered for the server. Objects data could be provided in different formats: binary, XML, GIF/PNG, and JSON. A generic user interface for THttpServer has been implemented with HTML/JavaScript based on JavaScript ROOT development. With any modern web browser one could list, display, and monitor objects available on the server. THttpServer is used in Go4 framework to provide HTTP interface to the online analysis.

Fault-tolerant back-up archive using an ASP model for disaster recovery

NASA Astrophysics Data System (ADS)

Liu, Brent J.; Huang, H. K.; Cao, Fei; Documet, Luis; Sarti, Dennis A.

2002-05-01

A single point of failure in PACS during a disaster scenario is the main archive storage and server. When a major disaster occurs, it is possible to lose an entire hospital's PACS data. Few current PACS archives feature disaster recovery, but the design is limited at best. These drawbacks include the frequency with which the back-up is physically removed to an offsite facility, the operational costs associated to maintain the back-up, the ease-of-use to perform the backup consistently and efficiently, and the ease-of-use to perform the PACS image data recovery. This paper describes a novel approach towards a fault-tolerant solution for disaster recovery of short-term PACS image data using an Application Service Provider model for service. The ASP back-up archive provides instantaneous, automatic backup of acquired PACS image data and instantaneous recovery of stored PACS image data all at a low operational cost. A back-up archive server and RAID storage device is implemented offsite from the main PACS archive location. In the example of this particular hospital, it was determined that at least 2 months worth of PACS image exams were needed for back-up. Clinical data from a hospital PACS is sent to this ASP storage server in parallel to the exams being archived in the main server. A disaster scenario was simulated and the PACS exams were sent from the offsite ASP storage server back to the hospital PACS. Initially, connectivity between the main archive and the ASP storage server is established via a T-1 connection. In the future, other more cost-effective means of connectivity will be researched such as the Internet 2. A disaster scenario was initiated and the disaster recovery process using the ASP back-up archive server was success in repopulating the clinical PACS within a short period of time. The ASP back-up archive was able to recover two months of PACS image data for comparison studies with no complex operational procedures. Furthermore, no image data loss was encountered during the recovery.

Where does boreal stream DOC come from? - Quantifying the contribution from different landscape compartments using stable C isotope ratios.

NASA Astrophysics Data System (ADS)

Brink Bylund, J.; Bastviken, D.; Morth, C.; Laudon, H.; Giesler, R.; Buffam, I.

2007-12-01

Stable carbon isotope (δ13C) ratios are frequently used as a source tracer of e.g. organic matter (OM) produced in terrestrial versus aquatic environments. To our knowledge there has been no previous attempt to quantify the relative contribution of dissolved organic carbon (DOC) from various landscape compartments in catchments of different sizes. Here, we test to what extent δ13C values can be used also to quantify the relative contribution of DOC from wetlands/riparian zones along streams, and off stream forest habitats, respectively. We present data on spatial and temporal variability of DOC concentrations and δ13C-DOC values, during the year of 2005 in Krycklan catchment, a boreal stream network in northern Sweden. Ten stream sites, ranging from order 1 to 4, were monitored in sub catchments with different wetland coverage. Spatial variation of DOC concentration showed a weak but statistically significant relationship with wetland area, with higher concentration with increasing percent of wetland in the drainage area. During base flow the difference in δ13C-DOC values was significantly different between forest (-27.5‰) and wetland (-28.1‰). This spatial pattern disappears during spring peak flow when higher discharge flushing upper soil layer and the riparian zone on DOC in the catchments. A simple mixing model using DOC and δ13C-DOC showed that stream water DOC could be describe as a mixture of DOC coming from forest (deep) groundwater and wetland/riparian zone water. The result indicates that during spring peak flow almost all stream DOC (84-100%) is derived from wetlands and riparian zones. The wetland/riparian water dominates the stream DOC flux at all hydrological events, except for two sites, one forest dominated and one mixed catchment, where the forest groundwater dominated the DOC transport during base flow. Although the total wetland area in Krycklan catchment only represent 8.3%, it contributed, together with riparian zones, to as much as 83% of the yearly DOC transport. This study shows that there is a great potential in using stable carbon isotopes to quantify the relative contribution of DOC from various landscape compartments in catchments. Quantitative patterns are crucial for several reasons. It is for example necessary in predicting the response to global warming which will result in a changed hydrology and shifts in the relative area of the landscape compartments in boreal environments. KEY WORDS carbon isotopes; dissolved organic carbon; streams; boreal; landscape compartments; wetland; groundwater

Direct analysis of δ13C and concentration of dissolved organic carbon (DOC) in environmental samples by TOC-IRMS

NASA Astrophysics Data System (ADS)

Kirkels, Frédérique; Cerli, Chiara; Federherr, Eugen; Kalbitz, Karsten

2014-05-01

Dissolved organic carbon (DOC) plays an important role in carbon cycling in terrestrial and aquatic systems. Stable isotope analysis (delta 13C) of DOC could provide valuable insights in its origin, fluxes and environmental fate. Precise and routine analysis of delta 13C and DOC concentration are therefore highly desirable. A promising, new system has been developed for this purpose, linking a high-temperature combustion TOC analyzer trough an interface with a continuous flow isotope ratio mass spectrometer (Elementar group, Hanau, Germany). This TOC-IRMS system enables simultaneous stable isotope (bulk delta 13C) and concentration analysis of DOC, with high oxidation efficiency by high-temperature combustion for complex mixtures as natural DOC. To give delta 13C analysis by TOC-IRMS the necessary impulse for broad-scale application, we present a detailed evaluation of its analytical performance for realistic and challenging conditions inclusive low DOC concentrations and environmental samples. High precision (standard deviation, SD predominantly < 0.15 permil) and accuracy (R2 = 0.9997, i.e. comparison TOC-IRMS and conventional EA-IRMS) were achieved by TOC-IRMS for a broad diversity of DOC solutions. This precision is comparable or even slightly better than that typically reported for EA-IRMS systems, and improves previous techniques for δ13C analysis of DOC. Simultaneously, very good precision was obtained for DOC concentration measurements. Assessment of natural abundance and slightly 13C enriched DOC, a wide range of concentrations (0.2-150 mgC/L) and injection volumes (0.05-3 ml), demonstrated good analytical performance with negligible memory effects, no concentration/volume effects and a wide linearity. Low DOC concentrations (< 2 mgC/L), were correctly analyzed without any pre-concentration. Moreover, TOC-IRMS was successfully applied to analyze DOC from diverse terrestrial, freshwater and marine environments (SD < 0.23 permil). In summary, the TOC-IRMS performs fast and reliable analysis of DOC concentration and δ13C in aqueous samples, without any pre-concentration/freeze-drying. Flexible usage is highlighted by automated, online analysis, a variable injection volume, high throughput and no extensive maintenance. Sample analysis is simple, using small aliquots and with minimal sample preparation. Further investigations should focus on complex, saline matrices and very low DOC concentrations, to achieve a potential lower limit of 0.2 mgC/L. High-resolution, routine delta 13C analysis of DOC by TOC-IRMS offers opportunities for wide-scale application in terrestrial, freshwater and marine research to elucidate the role of DOC in biogeochemical processes and ecosystem functioning.

Improving the quality of e-commerce web service: what is important for the request scheduling algorithm?

NASA Astrophysics Data System (ADS)

Suchacka, Grazyna

2005-02-01

The paper concerns a new research area that is Quality of Web Service (QoWS). The need for QoWS is motivated by a still growing number of Internet users, by a steady development and diversification of Web services, and especially by popularization of e-commerce applications. The goal of the paper is a critical analysis of the literature concerning scheduling algorithms for e-commerce Web servers. The paper characterizes factors affecting the load of the Web servers and discusses ways of improving their efficiency. Crucial QoWS requirements of the business Web server are identified: serving requests before their individual deadlines, supporting user session integrity, supporting different classes of users and minimizing a number of rejected requests. It is justified that meeting these requirements and implementing them in an admission control (AC) and scheduling algorithm for the business Web server is crucial to the functioning of e-commerce Web sites and revenue generated by them. The paper presents results of the literature analysis and discusses algorithms that implement these important QoWS requirements. The analysis showed that very few algorithms take into consideration the above mentioned factors and that there is a need for designing an algorithm implementing them.

Smart Cards and remote entrusting

NASA Astrophysics Data System (ADS)

Aussel, Jean-Daniel; D'Annoville, Jerome; Castillo, Laurent; Durand, Stephane; Fabre, Thierry; Lu, Karen; Ali, Asad

Smart cards are widely used to provide security in end-to-end communication involving servers and a variety of terminals, including mobile handsets or payment terminals. Sometime, end-to-end server to smart card security is not applicable, and smart cards must communicate directly with an application executing on a terminal, like a personal computer, without communicating with a server. In this case, the smart card must somehow trust the terminal application before performing some secure operation it was designed for. This paper presents a novel method to remotely trust a terminal application from the smart card. For terminals such as personal computers, this method is based on an advanced secure device connected through the USB and consisting of a smart card bundled with flash memory. This device, or USB dongle, can be used in the context of remote untrusting to secure portable applications conveyed in the dongle flash memory. White-box cryptography is used to set the secure channel and a mechanism based on thumbprint is described to provide external authentication when session keys need to be renewed. Although not as secure as end-to-end server to smart card security, remote entrusting with smart cards is easy to deploy for mass-market applications and can provide a reasonable level of security.

Flexible server architecture for resource-optimal presentation of Internet multimedia streams to the client

NASA Astrophysics Data System (ADS)

Boenisch, Holger; Froitzheim, Konrad

1999-12-01

The transfer of live media streams such as video and audio over the Internet is subject to several problems, static and dynamic by nature. Important quality of service (QoS) parameters do not only differ between various receivers depending on their network access, service provider, and nationality, the QoS is also variable in time. Moreover the installed receiver base is heterogeneous with respect to operating system, browser or client software, and browser version. We present a new concept for serving live media streams. It is not longer based on the current one-size-fits all paradigm, where the server offers just one stream. Our compresslet system takes the opposite approach: it builds media streams `to order' and `just in time'. Every client subscribing to a media stream uses a servlet loaded into the media server to generate a tailored data stream for his resources and constraints. The server is designed such that commonly used components for media streams are computed once. The compresslets use these prefabricated components, code additional data if necessary, and construct the data stream based on the dynamic available QoS and other client constraints. A client-specific encoding leads to resource- optimal presentation that is especially useful for the presentation of complex multimedia documents on a variety of output devices.

Alignment-Annotator web server: rendering and annotating sequence alignments.

PubMed

Gille, Christoph; Fähling, Michael; Weyand, Birgit; Wieland, Thomas; Gille, Andreas

2014-07-01

Alignment-Annotator is a novel web service designed to generate interactive views of annotated nucleotide and amino acid sequence alignments (i) de novo and (ii) embedded in other software. All computations are performed at server side. Interactivity is implemented in HTML5, a language native to web browsers. The alignment is initially displayed using default settings and can be modified with the graphical user interfaces. For example, individual sequences can be reordered or deleted using drag and drop, amino acid color code schemes can be applied and annotations can be added. Annotations can be made manually or imported (BioDAS servers, the UniProt, the Catalytic Site Atlas and the PDB). Some edits take immediate effect while others require server interaction and may take a few seconds to execute. The final alignment document can be downloaded as a zip-archive containing the HTML files. Because of the use of HTML the resulting interactive alignment can be viewed on any platform including Windows, Mac OS X, Linux, Android and iOS in any standard web browser. Importantly, no plugins nor Java are required and therefore Alignment-Anotator represents the first interactive browser-based alignment visualization. http://www.bioinformatics.org/strap/aa/ and http://strap.charite.de/aa/. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Alignment-Annotator web server: rendering and annotating sequence alignments

PubMed Central

Gille, Christoph; Fähling, Michael; Weyand, Birgit; Wieland, Thomas; Gille, Andreas

2014-01-01

Alignment-Annotator is a novel web service designed to generate interactive views of annotated nucleotide and amino acid sequence alignments (i) de novo and (ii) embedded in other software. All computations are performed at server side. Interactivity is implemented in HTML5, a language native to web browsers. The alignment is initially displayed using default settings and can be modified with the graphical user interfaces. For example, individual sequences can be reordered or deleted using drag and drop, amino acid color code schemes can be applied and annotations can be added. Annotations can be made manually or imported (BioDAS servers, the UniProt, the Catalytic Site Atlas and the PDB). Some edits take immediate effect while others require server interaction and may take a few seconds to execute. The final alignment document can be downloaded as a zip-archive containing the HTML files. Because of the use of HTML the resulting interactive alignment can be viewed on any platform including Windows, Mac OS X, Linux, Android and iOS in any standard web browser. Importantly, no plugins nor Java are required and therefore Alignment-Anotator represents the first interactive browser-based alignment visualization. Availability: http://www.bioinformatics.org/strap/aa/ and http://strap.charite.de/aa/. PMID:24813445

Federal Emergency Management Information System (FEMIS) System Administration Guide for FEMIS Version 1.4.6

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arp, J.A.; Bower, J.C.; Burnett, R.A.

The Federal Emergency Management Information System (FEMIS) is an emergency management planning and response tool that was developed by the Pacific Northwest National Laboratory (PNNL) under the direction of the U.S. Army Chemical Biological Defense Command. The FEMIS System Administration Guide provides information necessary for the system administrator to maintain the FEMIS system. The FEMIS system is designed for a single Chemical Stockpile Emergency Preparedness Program (CSEPP) site that has multiple Emergency Operations Centers (EOCs). Each EOC has personal computers (PCs) that emergency planners and operations personnel use to do their jobs. These PCs are corrected via a local areamore » network (LAN) to servers that provide EOC-wide services. Each EOC is interconnected to other EOCs via a Wide Area Network (WAN). Thus, FEMIS is an integrated software product that resides on client/server computer architecture. The main body of FEMIS software, referred to as the FEMIS Application Software, resides on the PC client(s) and is directly accessible to emergency management personnel. The remainder of the FEMIS software, referred to as the FEMIS Support Software, resides on the UNIX server. The Support Software provides the communication data distribution and notification functionality necessary to operate FEMIS in a networked, client/server environment.« less

Federal Emergency Management Information System (FEMIS), Installation Guide for FEMIS 1.4.6

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arp, J.A.; Burnett, R.A.; Carter, R.J.

The Federal Emergency Management Information System (FEMIS) is an emergency management planning and response tool that was developed by the Pacific Northwest National Laboratory (PNNL) under the direction of the U.S. Army Chemical Biological Defense Command. The FEMIS System Administration Guide provides information necessary for the system administrator to maintain the FEMIS system. The FEMIS system is designed for a single Chemical Stockpile Emergency Preparedness Program (CSEPP) site that has multiple Emergency Operations Centers (EOCs). Each EOC has personal computers (PCs) that emergency planners and operations personnel use to do their jobs. These PCs are corrected via a local areamore » network (LAN) to servers that provide EOC-wide services. Each EOC is interconnected to other EOCs via a Wide Area Network (WAN). Thus, FEMIS is an integrated software product that resides on client/server computer architecture. The main body of FEMIS software, referred to as the FEMIS Application Software, resides on the PC client(s) and is directly accessible to emergency management personnel. The remainder of the FEMIS software, referred to as the FEMIS Support Software, resides on the UNIX server. The Support Software provides the communication data distribution and notification functionality necessary to operate FEMIS in a networked, client/server environment.« less

Federal Emergency Management Information System (FEMIS) system administration guide. Version 1.4

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arp, J.A.; Burnett, R.A.; Downing, T.R.

The Federal Emergency Management Information System (FEMIS) is an emergency management planning and analysis tool that was developed by the Pacific Northwest National Laboratory (PNNL) under the direction of the US Army Chemical Biological Defense Command. The FEMIS System Administration Guide defines FEMIS hardware and software requirements and gives instructions for installing the FEMIS software package. This document also contains information on the following: software installation for the FEMIS data servers, communication server, mail server, and the emergency management workstations; distribution media loading and FEMIS installation validation and troubleshooting; and system management of FEMIS users, login privileges, and usage. Themore » system administration utilities (tools), available in the FEMIS client software, are described for user accounts and site profile. This document also describes the installation and use of system and database administration utilities that will assist in keeping the FEMIS system running in an operational environment. The FEMIS system is designed for a single Chemical Stockpile Emergency Preparedness Program (CSEPP) site that has multiple Emergency Operations Centers (EOCs). Each EOC has personal computers (PCs) that emergency planners and operations personnel use to do their jobs. These PCs are connected via a local area network (LAN) to servers that provide EOC-wide services. Each EOC is interconnected to other EOCs via telecommunications links.« less

A Browser-Server-Based Tele-audiology System That Supports Multiple Hearing Test Modalities.

PubMed

Yao, Jianchu Jason; Yao, Daoyuan; Givens, Gregg

2015-09-01

Millions of global citizens suffering from hearing disorders have limited or no access to much needed hearing healthcare. Although tele-audiology presents a solution to alleviate this problem, existing remote hearing diagnosis systems support only pure-tone tests, leaving speech and other test procedures unsolved, due to the lack of software and hardware to enable communication required between audiologists and their remote patients. This article presents a comprehensive remote hearing test system that integrates the two most needed hearing test procedures: a pure-tone audiogram and a speech test. This enhanced system is composed of a Web application server, an embedded smart Internet-Bluetooth(®) (Bluetooth SIG, Kirkland, WA) gateway (or console device), and a Bluetooth-enabled audiometer. Several graphical user interfaces and a relational database are hosted on the application server. The console device has been designed to support the tests and auxiliary communication between the local site and the remote site. The study was conducted at an audiology laboratory. Pure-tone audiogram and speech test results from volunteers tested with this tele-audiology system are comparable with results from the traditional face-to-face approach. This browser-server-based comprehensive tele-audiology offers a flexible platform to expand hearing services to traditionally underserved groups.

Federal Emergency Management Information System (FEMIS) Data Management Guide for FEMIS Version 1.4.6

DOE Office of Scientific and Technical Information (OSTI.GOV)

Angel, L.K.; Bower, J.C.; Burnett, R.A.

1999-06-29

The Federal Emergency Management Information System (FEMIS) is an emergency management planning and response tool that was developed by the Pacific Northwest National Laboratory (PNNL) under the direction of the U.S. Army Chemical Biological Defense Command. The FEMIS System Administration Guide provides information necessary for the system administrator to maintain the FEMIS system. The FEMIS system is designed for a single Chemical Stockpile Emergency Preparedness Program (CSEPP) site that has multiple Emergency Operations Centers (EOCs). Each EOC has personal computers (PCs) that emergency planners and operations personnel use to do their jobs. These PCs are corrected via a local areamore » network (LAN) to servers that provide EOC-wide services. Each EOC is interconnected to other EOCs via a Wide Area Network (WAN). Thus, FEMIS is an integrated software product that resides on client/server computer architecture. The main body of FEMIS software, referred to as the FEMIS Application Software, resides on the PC client(s) and is directly accessible to emergency management personnel. The remainder of the FEMIS software, referred to as the FEMIS Support Software, resides on the UNIX server. The Support Software provides the communication data distribution and notification functionality necessary to operate FEMIS in a networked, client/server environment.« less

SCOPE: a web server for practical de novo motif discovery.

PubMed

Carlson, Jonathan M; Chakravarty, Arijit; DeZiel, Charles E; Gross, Robert H

2007-07-01

SCOPE is a novel parameter-free method for the de novo identification of potential regulatory motifs in sets of coordinately regulated genes. The SCOPE algorithm combines the output of three component algorithms, each designed to identify a particular class of motifs. Using an ensemble learning approach, SCOPE identifies the best candidate motifs from its component algorithms. In tests on experimentally determined datasets, SCOPE identified motifs with a significantly higher level of accuracy than a number of other web-based motif finders run with their default parameters. Because SCOPE has no adjustable parameters, the web server has an intuitive interface, requiring only a set of gene names or FASTA sequences and a choice of species. The most significant motifs found by SCOPE are displayed graphically on the main results page with a table containing summary statistics for each motif. Detailed motif information, including the sequence logo, PWM, consensus sequence and specific matching sites can be viewed through a single click on a motif. SCOPE's efficient, parameter-free search strategy has enabled the development of a web server that is readily accessible to the practising biologist while providing results that compare favorably with those of other motif finders. The SCOPE web server is at .

Implementation of an Embedded Web Server Application for Wireless Control of Brain Computer Interface Based Home Environments.

PubMed

Aydın, Eda Akman; Bay, Ömer Faruk; Güler, İnan

2016-01-01

Brain Computer Interface (BCI) based environment control systems could facilitate life of people with neuromuscular diseases, reduces dependence on their caregivers, and improves their quality of life. As well as easy usage, low-cost, and robust system performance, mobility is an important functionality expected from a practical BCI system in real life. In this study, in order to enhance users' mobility, we propose internet based wireless communication between BCI system and home environment. We designed and implemented a prototype of an embedded low-cost, low power, easy to use web server which is employed in internet based wireless control of a BCI based home environment. The embedded web server provides remote access to the environmental control module through BCI and web interfaces. While the proposed system offers to BCI users enhanced mobility, it also provides remote control of the home environment by caregivers as well as the individuals in initial stages of neuromuscular disease. The input of BCI system is P300 potentials. We used Region Based Paradigm (RBP) as stimulus interface. Performance of the BCI system is evaluated on data recorded from 8 non-disabled subjects. The experimental results indicate that the proposed web server enables internet based wireless control of electrical home appliances successfully through BCIs.

Earth System Documentation (ES-DOC) Preparation for CMIP6

NASA Astrophysics Data System (ADS)

Denvil, S.; Murphy, S.; Greenslade, M. A.; Lawrence, B.; Guilyardi, E.; Pascoe, C.; Treshanksy, A.; Elkington, M.; Hibling, E.; Hassell, D.

2015-12-01

During the course of 2015 the Earth System Documentation (ES-DOC) project began its preparations for CMIP6 (Coupled Model Inter-comparison Project 6) by further extending the ES-DOC tooling ecosystem in support of Earth System Model (ESM) documentation creation, search, viewing & comparison. The ES-DOC online questionnaire, the ES-DOC desktop notebook, and the ES-DOC python toolkit will serve as multiple complementary pathways to generating CMIP6 documentation. It is envisaged that institutes will leverage these tools at different points of the CMIP6 lifecycle. Institutes will be particularly interested to know that the documentation burden will be either streamlined or completely automated.As all the tools are tightly integrated with the ES-DOC web-service, institutes can be confident that the latency between documentation creation & publishing will be reduced to a minimum. Published documents will be viewable with the online ES-DOC Viewer (accessible via citable URL's). Model inter-comparison scenarios will be supported using the ES-DOC online Comparator tool. The Comparator is being extended to:• Support comparison of both Model descriptions & Simulation runs;• Greatly streamline the effort involved in compiling official tables.The entire ES-DOC ecosystem is open source and built upon open standards such as the Common Information Model (CIM) (versions 1 and 2).

Plant diversity induces a shift of DOC concentration over time - results from long term and large scale experiment

NASA Astrophysics Data System (ADS)

Lange, Markus; Gleixner, Gerd

2016-04-01

Plant diversity has been demonstrated as a crucial factor for soil organic carbon (SOC) storage. The horizontal SOC formation in turn is strongly impacted by the relative small but consistent flow of dissolved organic carbon (DOC) in soils. In this process, pore water leaches plant material and already stored SOC while simultaneously these leachates are transported downwards. However, there is a big uncertainty about the drivers of DOC flux; in particular about the importance of biological processes. We investigated the impact of plant diversity and other biotic drivers on DOC concentrations and total DOC fluxes (concentration × sampled water amount). In addition, we considered abiotic factors such as weather and soil conditions to assess the relative importance of biotic and abiotic drivers and how their importance changes over time. We used a comprehensive data set, gathered in the frame of the long-term biodiversity experiment "The Jena Experiment". Permanent monitoring started directly after establishment of the field site in 2002 and is still running. This enabled us to trace the impact of plant communities with their increasing establishment over the time on DOC concentration. We found the amount of sampled pore water best explained by rainfall, while it was not related to plant associated variables. Directly after establishing the experimental site, DOC concentrations were highest and then decreasing with time. In the first period of the experiment plant diversity had no or even a slightly negative impact on DOC concentrations. The direction of the plant diversity effect on DOC concentrations changed over time; namely in later phases we observed highest DOC concentrations on plots with high plant diversity. Moreover, DOC concentrations were negatively affected by increased amounts of sampled pore water indicating a dilution effect. Even though this impact was highly significant; its effect size was even less pronounced at later time points. In summary, inter annual differences of total DOC fluxes reflect patterns of sampled soil water, indicating the major driver of total DOC flux is driven by rainfall. In contrast, intra annually the DOC flux reflects the patterns of the DOC concentrations with a strengthening positive impact of plant diversity among time. Our results show that variations of the total DOC fluxes are more affected by the pore water flux than by the differences in DOC concentrations as the magnitude of the pore water flux exceeds the magnitude of concentrations by a factor of 20. This indicates that abiotic conditions set the frame in which biotic properties can drive the DOC flux. However, the biotic drivers are getting more important over time and might outperform the dominating role of the abiotic conditions on the longer term.

Characteristics and Energy Use of Volume Servers in the United States

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fuchs, H.; Shehabi, A.; Ganeshalingam, M.

Servers’ field energy use remains poorly understood, given heterogeneous computing loads, configurable hardware and software, and operation over a wide range of management practices. This paper explores various characteristics of 1- and 2-socket volume servers that affect energy consumption, and quantifies the difference in power demand between higher-performing SPEC and ENERGY STAR servers and our best understanding of a typical server operating today. We first establish general characteristics of the U.S. installed base of volume servers from existing IDC data and the literature, before presenting information on server hardware configurations from data collection events at a major online retail website.more » We then compare cumulative distribution functions of server idle power across three separate datasets and explain the differences between them via examination of the hardware characteristics to which power draw is most sensitive. We find that idle server power demand is significantly higher than ENERGY STAR benchmarks and the industry-released energy use documented in SPEC, and that SPEC server configurations—and likely the associated power-scaling trends—are atypical of volume servers. Next, we examine recent trends in server power draw among high-performing servers across their full load range to consider how representative these trends are of all volume servers before inputting weighted average idle power load values into a recently published model of national server energy use. Finally, we present results from two surveys of IT managers (n=216) and IT vendors (n=178) that illustrate the prevalence of more-efficient equipment and operational practices in server rooms and closets; these findings highlight opportunities to improve the energy efficiency of the U.S. server stock.« less

A Powerful, Cost Effective, Web Based Engineering Solution Supporting Conjunction Detection and Visual Analysis

NASA Astrophysics Data System (ADS)

Novak, Daniel M.; Biamonti, Davide; Gross, Jeremy; Milnes, Martin

2013-08-01

An innovative and visually appealing tool is presented for efficient all-vs-all conjunction analysis on a large catalogue of objects. The conjunction detection uses a nearest neighbour search algorithm, based on spatial binning and identification of pairs of objects in adjacent bins. This results in the fastest all vs all filtering the authors are aware of. The tool is constructed on a server-client architecture, where the server broadcasts to the client the conjunction data and ephemerides, while the client supports the user interface through a modern browser, without plug-in. In order to make the tool flexible and maintainable, Java software technologies were used on the server side, including Spring, Camel, ActiveMQ and CometD. The user interface and visualisation are based on the latest web technologies: HTML5, WebGL, THREE.js. Importance has been given on the ergonomics and visual appeal of the software. In fact certain design concepts have been borrowed from the gaming industry.

Centralized Fabric Management Using Puppet, Git, and GLPI

NASA Astrophysics Data System (ADS)

Smith, Jason A.; De Stefano, John S., Jr.; Fetzko, John; Hollowell, Christopher; Ito, Hironori; Karasawa, Mizuki; Pryor, James; Rao, Tejas; Strecker-Kellogg, William

2012-12-01

Managing the infrastructure of a large and complex data center can be extremely difficult without taking advantage of recent technological advances in administrative automation. Puppet is a seasoned open-source tool that is designed for enterprise class centralized configuration management. At the RHIC and ATLAS Computing Facility (RACF) at Brookhaven National Laboratory, we use Puppet along with Git, GLPI, and some custom scripts as part of our centralized configuration management system. In this paper, we discuss how we use these tools for centralized configuration management of our servers and services, change management requiring authorized approval of production changes, a complete version controlled history of all changes made, separation of production, testing and development systems using puppet environments, semi-automated server inventory using GLPI, and configuration change monitoring and reporting using the Puppet dashboard. We will also discuss scalability and performance results from using these tools on a 2,000+ node cluster and 400+ infrastructure servers with an administrative staff of approximately 25 full-time employees (FTEs).

BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server.

PubMed

Geeleher, Paul; Morris, Dermot; Hinde, John P; Golden, Aaron

2009-06-01

BioconductorBuntu is a custom distribution of Ubuntu Linux that automatically installs a server-side microarray processing environment, providing a user-friendly web-based GUI to many of the tools developed by the Bioconductor Project, accessible locally or across a network. System installation is via booting off a CD image or by using a Debian package provided to upgrade an existing Ubuntu installation. In its current version, several microarray analysis pipelines are supported including oligonucleotide, dual-or single-dye experiments, including post-processing with Gene Set Enrichment Analysis. BioconductorBuntu is designed to be extensible, by server-side integration of further relevant Bioconductor modules as required, facilitated by its straightforward underlying Python-based infrastructure. BioconductorBuntu offers an ideal environment for the development of processing procedures to facilitate the analysis of next-generation sequencing datasets. BioconductorBuntu is available for download under a creative commons license along with additional documentation and a tutorial from (http://bioinf.nuigalway.ie).

Using the Textpresso Site-Specific Recombinases Web server to identify Cre expressing mouse strains and floxed alleles.

PubMed

Condie, Brian G; Urbanski, William M

2014-01-01

Effective tools for searching the biomedical literature are essential for identifying reagents or mouse strains as well as for effective experimental design and informed interpretation of experimental results. We have built the Textpresso Site Specific Recombinases (Textpresso SSR) Web server to enable researchers who use mice to perform in-depth searches of a rapidly growing and complex part of the mouse literature. Our Textpresso Web server provides an interface for searching the full text of most of the peer-reviewed publications that report the characterization or use of mouse strains that express Cre or Flp recombinase. The database also contains most of the publications that describe the characterization or analysis of strains carrying conditional alleles or transgenes that can be inactivated or activated by site-specific recombinases such as Cre or Flp. Textpresso SSR complements the existing online databases that catalog Cre and Flp expression patterns by providing a unique online interface for the in-depth text mining of the site specific recombinase literature.

Interactive Machine Learning at Scale with CHISSL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arendt, Dustin L.; Grace, Emily A.; Volkova, Svitlana

We demonstrate CHISSL, a scalable client-server system for real-time interactive machine learning. Our system is capa- ble of incorporating user feedback incrementally and imme- diately without a structured or pre-defined prediction task. Computation is partitioned between a lightweight web-client and a heavyweight server. The server relies on representation learning and agglomerative clustering to learn a dendrogram, a hierarchical approximation of a representation space. The client uses only this dendrogram to incorporate user feedback into the model via transduction. Distances and predictions for each unlabeled instance are updated incrementally and deter- ministically, with O(n) space and time complexity. Our al- gorithmmore » is implemented in a functional prototype, designed to be easy to use by non-experts. The prototype organizes the large amounts of data into recommendations. This allows the user to interact with actual instances by dragging and drop- ping to provide feedback in an intuitive manner. We applied CHISSL to several domains including cyber, social media, and geo-temporal analysis.« less

Application of wireless networks-peer-to-peer information sharing

NASA Astrophysics Data System (ADS)

ellappan, Vijayan; chaki, suchismita; kumar, avn

2017-11-01

Peer to Peer communications and its applications have gotten to be ordinary construction modelling in the wired network environment. But then, they have not been successfully adjusted with the wireless environment. Unlike the traditional client-server framework, in a P2P framework, each node can play the role of client as well as server simultaneously and exchange data or information with others. We aim to design an application which can adapt to the wireless ad-hoc networks. Peer to Peer communication can help people to share their files (information, image, audio, video and so on) and communicate with each other without relying on a particular network infrastructure or limited data usage. Here there is a central server with the help of which, the peers will have the capability to get the information about the other peers in the network. Indeed, even without the Internet, devices have the potential to allow users to connect and communicate in a special way through short range remote protocols such Wi-Fi.

VoIP attacks detection engine based on neural network

NASA Astrophysics Data System (ADS)

Safarik, Jakub; Slachta, Jiri

2015-05-01

The security is crucial for any system nowadays, especially communications. One of the most successful protocols in the field of communication over IP networks is Session Initiation Protocol. It is an open-source project used by different kinds of applications, both open-source and proprietary. High penetration and text-based principle made SIP number one target in IP telephony infrastructure, so security of SIP server is essential. To keep up with hackers and to detect potential malicious attacks, security administrator needs to monitor and evaluate SIP traffic in the network. But monitoring and following evaluation could easily overwhelm the security administrator in networks, typically in networks with a number of SIP servers, users and logically or geographically separated networks. The proposed solution lies in automatic attack detection systems. The article covers detection of VoIP attacks through a distributed network of nodes. Then the gathered data analyze aggregation server with artificial neural network. Artificial neural network means multilayer perceptron network trained with a set of collected attacks. Attack data could also be preprocessed and verified with a self-organizing map. The source data is detected by distributed network of detection nodes. Each node contains a honeypot application and traffic monitoring mechanism. Aggregation of data from each node creates an input for neural networks. The automatic classification on a centralized server with low false positive detection reduce the cost of attack detection resources. The detection system uses modular design for easy deployment in final infrastructure. The centralized server collects and process detected traffic. It also maintains all detection nodes.

Mobile Assisted Security in Wireless Sensor Networks

DTIC Science & Technology

2015-08-03

server from Google’s DNS, Chromecast and the content server does the 3-way TCP Handshake which is followed by Client Hello and Server Hello TLS messages...utilized TLS v1.2, except NTP servers and google’s DNS server. In the TLS v1.2, after handshake, client and server sends Client Hello and Server Hello ...Messages in order. In Client Hello messages, client offers a list of Cipher Suites that it supports. Each Cipher Suite defines the key exchange algorithm

Hidden cycle of dissolved organic carbon in the deep ocean.

PubMed

Follett, Christopher L; Repeta, Daniel J; Rothman, Daniel H; Xu, Li; Santinelli, Chiara

2014-11-25

Marine dissolved organic carbon (DOC) is a large (660 Pg C) reactive carbon reservoir that mediates the oceanic microbial food web and interacts with climate on both short and long timescales. Carbon isotopic content provides information on the DOC source via δ(13)C and age via Δ(14)C. Bulk isotope measurements suggest a microbially sourced DOC reservoir with two distinct components of differing radiocarbon age. However, such measurements cannot determine internal dynamics and fluxes. Here we analyze serial oxidation experiments to quantify the isotopic diversity of DOC at an oligotrophic site in the central Pacific Ocean. Our results show diversity in both stable and radio isotopes at all depths, confirming DOC cycling hidden within bulk analyses. We confirm the presence of isotopically enriched, modern DOC cocycling with an isotopically depleted older fraction in the upper ocean. However, our results show that up to 30% of the deep DOC reservoir is modern and supported by a 1 Pg/y carbon flux, which is 10 times higher than inferred from bulk isotope measurements. Isotopically depleted material turns over at an apparent time scale of 30,000 y, which is far slower than indicated by bulk isotope measurements. These results are consistent with global DOC measurements and explain both the fluctuations in deep DOC concentration and the anomalous radiocarbon values of DOC in the Southern Ocean. Collectively these results provide an unprecedented view of the ways in which DOC moves through the marine carbon cycle.

Hidden cycle of dissolved organic carbon in the deep ocean

PubMed Central

Follett, Christopher L.; Repeta, Daniel J.; Rothman, Daniel H.; Xu, Li; Santinelli, Chiara

2014-01-01

Marine dissolved organic carbon (DOC) is a large (660 Pg C) reactive carbon reservoir that mediates the oceanic microbial food web and interacts with climate on both short and long timescales. Carbon isotopic content provides information on the DOC source via δ13C and age via Δ14C. Bulk isotope measurements suggest a microbially sourced DOC reservoir with two distinct components of differing radiocarbon age. However, such measurements cannot determine internal dynamics and fluxes. Here we analyze serial oxidation experiments to quantify the isotopic diversity of DOC at an oligotrophic site in the central Pacific Ocean. Our results show diversity in both stable and radio isotopes at all depths, confirming DOC cycling hidden within bulk analyses. We confirm the presence of isotopically enriched, modern DOC cocycling with an isotopically depleted older fraction in the upper ocean. However, our results show that up to 30% of the deep DOC reservoir is modern and supported by a 1 Pg/y carbon flux, which is 10 times higher than inferred from bulk isotope measurements. Isotopically depleted material turns over at an apparent time scale of 30,000 y, which is far slower than indicated by bulk isotope measurements. These results are consistent with global DOC measurements and explain both the fluctuations in deep DOC concentration and the anomalous radiocarbon values of DOC in the Southern Ocean. Collectively these results provide an unprecedented view of the ways in which DOC moves through the marine carbon cycle. PMID:25385632

DspaceOgre 3D Graphics Visualization Tool

NASA Technical Reports Server (NTRS)

Jain, Abhinandan; Myin, Steven; Pomerantz, Marc I.

2011-01-01

This general-purpose 3D graphics visualization C++ tool is designed for visualization of simulation and analysis data for articulated mechanisms. Examples of such systems are vehicles, robotic arms, biomechanics models, and biomolecular structures. DspaceOgre builds upon the open-source Ogre3D graphics visualization library. It provides additional classes to support the management of complex scenes involving multiple viewpoints and different scene groups, and can be used as a remote graphics server. This software provides improved support for adding programs at the graphics processing unit (GPU) level for improved performance. It also improves upon the messaging interface it exposes for use as a visualization server.

Development of a combined isotopic and mass-balance approach to determine dissolved organic carbon sources in eutrophic reservoirs.

PubMed

Pierson-Wickmann, Anne-Catherine; Gruau, Gérard; Jardé, Emilie; Gaury, Nicolas; Brient, Luc; Lengronne, Marion; Crocq, André; Helle, Daniel; Lambert, Thibault

2011-04-01

A combined mass-balance and stable isotope approach was set up to identify and quantify dissolved organic carbon (DOC) sources in a DOC-rich (9mgL(-1)) eutrophic reservoir located in Western France and used for drinking water supply (so-called Rophemel reservoir). The mass-balance approach consisted in measuring the flux of allochthonous DOC on a daily basis, and in comparing it with the effective (measured) DOC concentration of the reservoir. The isotopic approach consisted, for its part, in measuring the carbon isotope ratios (δ(13)C values) of both allochthonous and autochthonous DOC sources, and comparing these values with the δ(13)C values of the reservoir DOC. Results from both approaches were consistent pointing out for a DOC of 100% allochthonous origin. In particular, the δ(13)C values of the DOC recovered in the reservoir (-28.5±0.2‰; n=22) during the algal bloom season (May-September) showed no trace of an autochthonous contribution (δ(13)C in algae=-30.1±0.3‰; n=2) being indistinguishable from the δ(13)C values of allochthonous DOC from inflowing rivers (-28.6±0.1‰; n=8). These results demonstrate that eutrophication is not responsible for the high DOC concentrations observed in the Rophemel reservoir and that limiting eutrophication of this reservoir will not reduce the potential formation of disinfection by-products during water treatment. The methodology developed in this study based on a complementary isotopic and mass-balance approach provides a powerful tool, suitable to identify and quantify DOC sources in eutrophic, DOC-contaminated reservoirs. Copyright © 2010 Elsevier Ltd. All rights reserved.

The influence of reservoirs, climate, land use and hydrologic conditions on loads and chemical quality of dissolved organic carbon in the Colorado River

USGS Publications Warehouse

Miller, Matthew P.

2012-01-01

Longitudinal patterns in dissolved organic carbon (DOC) loads and chemical quality were identified in the Colorado River from the headwaters in the Rocky Mountains to the United States-Mexico border from 1994 to 2011. Watershed- and reach-scale climate, land use, river discharge and hydrologic modification conditions that contribute to patterns in DOC were also identified. Principal components analysis (PCA) identified site-specific precipitation and reach-scale discharge as being correlated with sites in the upper basin, where there were increases in DOC load from the upstream to downstream direction. In the lower basin, where DOC load decreased from upstream to downstream, sites were correlated with site-specific temperature and reach-scale population, urban land use and hydrologic modification. In the reaches containing Lakes Powell and Mead, the two largest reservoirs in the United States, DOC quantity decreased, terrestrially derived aromatic DOC was degraded and/or autochthonous less aromatic DOC was produced. Taken together, these results suggest that longitudinal patterns in the relatively unregulated upper basin are influenced by watershed inputs of water and DOC, whereas DOC patterns in the lower basin are reflective of a balance between watershed contribution of water and DOC to the river and loss of water and DOC due to hydrologic modification and/or biogeochemical processes. These findings suggest that alteration of constituent fluxes in rivers that are highly regulated may overshadow watershed processes that would control fluxes in comparable unregulated rivers. Further, these results provide a foundation for detailed assessments of factors controlling the transport and chemical quality of DOC in the Colorado River.

Insights and issues with simulating terrestrial DOC loading of Arctic river networks

USGS Publications Warehouse

Kicklighter, David W.; Hayes, Daniel J.; McClelland, James W.; Peterson, Bruce J.; McGuire, A. David; Melillo, Jerry M.

2013-01-01

Terrestrial carbon dynamics influence the contribution of dissolved organic carbon (DOC) to river networks in addition to hydrology. In this study, we use a biogeochemical process model to simulate the lateral transfer of DOC from land to the Arctic Ocean via riverine transport. We estimate that, over the 20th century, the pan-Arctic watershed has contributed, on average, 32 Tg C/yr of DOC to river networks emptying into the Arctic Ocean with most of the DOC coming from the extensive area of boreal deciduous needle-leaved forests and forested wetlands in Eurasian watersheds. We also estimate that the rate of terrestrial DOC loading has been increasing by 0.037 Tg C/yr2 over the 20th century primarily as a result of climate-induced increases in water yield. These increases have been offset by decreases in terrestrial DOC loading caused by wildfires. Other environmental factors (CO2 fertilization, ozone pollution, atmospheric nitrogen deposition, timber harvest, agriculture) are estimated to have relatively small effects on terrestrial DOC loading to Arctic rivers. The effects of the various environmental factors on terrestrial carbon dynamics have both offset and enhanced concurrent effects on hydrology to influence terrestrial DOC loading and may be changing the relative importance of terrestrial carbon dynamics on this carbon flux. Improvements in simulating terrestrial DOC loading to pan-Arctic rivers in the future will require better information on the production and consumption of DOC within the soil profile, the transfer of DOC from land to headwater streams, the spatial distribution of precipitation and its temporal trends, carbon dynamics of larch-dominated ecosystems in eastern Siberia, and the role of industrial organic effluents on carbon budgets of rivers in western Russia.

Controls on stream water dissolved mercury in three mid-Appalachian forested headwater catchments

NASA Astrophysics Data System (ADS)

Riscassi, Ami L.; Scanlon, Todd M.

2011-12-01

Determining the controls on dissolved mercury (HgD) transport is necessary to improve estimations of export from unmonitored watersheds and to forecast responses to changes in deposition and other environmental forcings. Stream water HgD and dissolved organic carbon (DOC) were evaluated over a range of discharge conditions in three streams within Shenandoah National Park, VA. Watersheds are distinguished by stream water pH (ranging from neutral to acidic) and soil size fractioning (ranging from clays to sands). At all sites, discharge was a significant but poor predictor of HgD concentrations (r2 from 0.13-0.52). HgD was strongly coupled with DOC at all sites (r2 from 0.74-0.89). UV absorbance at 254 nm (UV254), a proxy for DOC quantity and quality, slightly improved the predictions of HgD. Mean DOC quality differed between streams, with less aromatic DOC mobilized from the more acidic watershed. The site with less aromatic DOC and sandy soils mobilized more Hg to the stream for the same quantity and quality of DOC, likely due to the reduced capacity of the larger-grained soils to retain Hg, leaving a greater fraction associated with the organic matter. A similar amount of 0.54 ng HgD/mg DOC is transported at all sites, suggesting the less aromatic DOC transports less Hg per unit DOC, offsetting the effects of soil type. This research demonstrates that soil composition and DOC quality influence HgDexport. We also provide evidence that soil organic carbon is a primary control on Hg-DOC ratios (0.12-1.4 ng mg-1) observed across the U.S. and Sweden.

SU-D-BRD-02: A Web-Based Image Processing and Plan Evaluation Platform (WIPPEP) for Future Cloud-Based Radiotherapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chai, X; Liu, L; Xing, L

Purpose: Visualization and processing of medical images and radiation treatment plan evaluation have traditionally been constrained to local workstations with limited computation power and ability of data sharing and software update. We present a web-based image processing and planning evaluation platform (WIPPEP) for radiotherapy applications with high efficiency, ubiquitous web access, and real-time data sharing. Methods: This software platform consists of three parts: web server, image server and computation server. Each independent server communicates with each other through HTTP requests. The web server is the key component that provides visualizations and user interface through front-end web browsers and relay informationmore » to the backend to process user requests. The image server serves as a PACS system. The computation server performs the actual image processing and dose calculation. The web server backend is developed using Java Servlets and the frontend is developed using HTML5, Javascript, and jQuery. The image server is based on open source DCME4CHEE PACS system. The computation server can be written in any programming language as long as it can send/receive HTTP requests. Our computation server was implemented in Delphi, Python and PHP, which can process data directly or via a C++ program DLL. Results: This software platform is running on a 32-core CPU server virtually hosting the web server, image server, and computation servers separately. Users can visit our internal website with Chrome browser, select a specific patient, visualize image and RT structures belonging to this patient and perform image segmentation running Delphi computation server and Monte Carlo dose calculation on Python or PHP computation server. Conclusion: We have developed a webbased image processing and plan evaluation platform prototype for radiotherapy. This system has clearly demonstrated the feasibility of performing image processing and plan evaluation platform through a web browser and exhibited potential for future cloud based radiotherapy.« less

CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.

PubMed

Bleda, Marta; Tarraga, Joaquin; de Maria, Alejandro; Salavert, Francisco; Garcia-Alonso, Luz; Celma, Matilde; Martin, Ainoha; Dopazo, Joaquin; Medina, Ignacio

2012-07-01

During the past years, the advances in high-throughput technologies have produced an unprecedented growth in the number and size of repositories and databases storing relevant biological data. Today, there is more biological information than ever but, unfortunately, the current status of many of these repositories is far from being optimal. Some of the most common problems are that the information is spread out in many small databases; frequently there are different standards among repositories and some databases are no longer supported or they contain too specific and unconnected information. In addition, data size is increasingly becoming an obstacle when accessing or storing biological data. All these issues make very difficult to extract and integrate information from different sources, to analyze experiments or to access and query this information in a programmatic way. CellBase provides a solution to the growing necessity of integration by easing the access to biological data. CellBase implements a set of RESTful web services that query a centralized database containing the most relevant biological data sources. The database is hosted in our servers and is regularly updated. CellBase documentation can be found at http://docs.bioinfo.cipf.es/projects/cellbase.

Enhancing UCSF Chimera through web services.

PubMed

Huang, Conrad C; Meng, Elaine C; Morris, John H; Pettersen, Eric F; Ferrin, Thomas E

2014-07-01

Integrating access to web services with desktop applications allows for an expanded set of application features, including performing computationally intensive tasks and convenient searches of databases. We describe how we have enhanced UCSF Chimera (http://www.rbvi.ucsf.edu/chimera/), a program for the interactive visualization and analysis of molecular structures and related data, through the addition of several web services (http://www.rbvi.ucsf.edu/chimera/docs/webservices.html). By streamlining access to web services, including the entire job submission, monitoring and retrieval process, Chimera makes it simpler for users to focus on their science projects rather than data manipulation. Chimera uses Opal, a toolkit for wrapping scientific applications as web services, to provide scalable and transparent access to several popular software packages. We illustrate Chimera's use of web services with an example workflow that interleaves use of these services with interactive manipulation of molecular sequences and structures, and we provide an example Python program to demonstrate how easily Opal-based web services can be accessed from within an application. Web server availability: http://webservices.rbvi.ucsf.edu/opal2/dashboard?command=serviceList. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Qichun; Zhang, Xuesong; Xu, Xingya

Riverine carbon cycling is an important, but insufficiently investigated component of the global carbon cycle. Analyses of environmental controls on riverine carbon cycling are critical for improved understanding of mechanisms regulating carbon processing and storage along the terrestrial-aquatic continuum. Here, we compile and analyze riverine dissolved organic carbon (DOC) concentration data from 1402 United States Geological Survey (USGS) gauge stations to examine the spatial variability and environmental controls of DOC concentrations in the United States (U.S.) surface waters. DOC concentrations exhibit high spatial variability, with an average of 6.42 ± 6.47 mg C/ L (Mean ± Standard Deviation). In general,more » high DOC concentrations occur in the Upper Mississippi River basin and the Southeastern U.S., while low concentrations are mainly distributed in the Western U.S. Single-factor analysis indicates that slope of drainage areas, wetlands, forests, percentage of first-order streams, and instream nutrients (such as nitrogen and phosphorus) pronouncedly influence DOC concentrations, but the explanatory power of each bivariate model is lower than 35%. Analyses based on the general multi-linear regression models suggest DOC concentrations are jointly impacted by multiple factors. Soil properties mainly show positive correlations with DOC concentrations; forest and shrub lands have positive correlations with DOC concentrations, but urban area and croplands demonstrate negative impacts; total instream phosphorus and dam density correlate positively with DOC concentrations. Notably, the relative importance of these environmental controls varies substantially across major U.S. water resource regions. In addition, DOC concentrations and environmental controls also show significant variability from small streams to large rivers, which may be caused by changing carbon sources and removal rates by river orders. In sum, our results reveal that general multi-linear regression analysis of twenty one terrestrial and aquatic environmental factors can partially explain (56%) the DOC concentration variation. In conclusion, this study highlights the complexity of the interactions among these environmental factors in determining DOC concentrations, thus calls for processes-based, non-linear methodologies to constrain uncertainties in riverine DOC cycling.« less

Identification and analysis of low molecular weight dissolved organic carbon in subglacial basal ice ecosystems by ion chromatography

NASA Astrophysics Data System (ADS)

Lawson, E. C.; Wadham, J. L.; Lis, G. P.; Tranter, M.; Pickard, A. E.; Stibal, M.; Dewsbury, P.; Fitzsimons, S.

2015-08-01

Glacial runoff is an important source of dissolved organic carbon (DOC) for downstream heterotrophic activity, despite the low overall DOC concentrations. This is because of the abundance of bioavailable, low molecular weight (LMW) DOC species. However, the provenance and character of LMW-DOC is not fully understood. We investigated the abundance and composition of DOC in subglacial environments via a molecular level DOC analysis of basal ice, which forms by water/sediment freeze-on to the glacier sole. Spectrofluorometry and a novel ion chromatographic method, which has been little utilised in glacial science for LMW-DOC determinations, were employed to identify and quantify the major LMW fractions (free amino acids, carbohydrates and carboxylic acids) in basal ice from four glaciers, each with a different basal debris type. Basal ice from Joyce Glacier (Antarctica) was unique in that 98 % of the LMW-DOC was derived from the extremely diverse FAA pool, comprising 14 FAAs. LMW-DOC concentrations in basal ice were dependent on the bioavailability of the overridden organic carbon (OC), which in turn, was influenced by the type of overridden material. Mean LMW-DOC concentrations in basal ice from Russell Glacier (Greenland), Finsterwalderbreen (Svalbard) and Engabreen (Norway) were low (0-417 nM C), attributed to the relatively refractory nature of the OC in the overridden paleosols and bedrock. In contrast, mean LMW-DOC concentrations were an order of magnitude higher (4430 nM C) in basal ice from Joyce Glacier, a reflection of the high bioavailability of the overridden lacustrine material (>17 % of the sediment OC comprised extractable carbohydrates, a proxy for bioavailable OC). We find that the overridden material may act as a direct (via abiotic leaching) and indirect (via microbial cycling) source of DOC to the subglacial environment and provides a range of LMW-DOC compounds that may stimulate microbial activity in wet sediments in current subglacial environments.

Partial coupling and differential regulation of biologically and photo-chemically labile dissolved organic carbon across boreal aquatic networks

NASA Astrophysics Data System (ADS)

Lapierre, J.-F.; del Giorgio, P. A.

2014-05-01

Despite the rapidly increasing volume of research on the biological and photochemical degradation of DOC in aquatic environments, little is known on the large-scale patterns in biologically and photo-chemically degradable DOC (Bd-DOC and Pd-DOC, respectively) in continental watersheds, and on the links that exist between these two key properties that greatly influence the flow of carbon from continents to oceans. Here we explore the patterns of Bd- and Pd-DOC across hundreds of boreal lakes, rivers and wetlands spanning a large range of system trophy and terrestrial influence, and compared the drivers of these two reactive pools of DOC at the landscape level. Using standardized incubations of natural waters, we found that the concentrations of Bd- and Pd-DOC co-varied across all systems studied but were nevertheless related to different pools of dissolved organic matter (DOM, identified by fluorescence analyses) in ambient waters. A combination of nutrients and protein-like DOM explained nearly half of the variation in Bd-DOC, whereas Pd-DOC was exclusively predicted by DOM optical properties, consistent with the photochemical degradability of specific fluorescent DOM (FDOM) pools that we experimentally determined. The concentrations of colored DOM (CDOM), a proxy of terrestrial influence, almost entirely accounted for the observed relationship between FDOM and the concentrations of both Bd- and Pd-DOC. The concentrations of CDOM and of the putative bio-labile fluorescence component shifted from complete decoupling in clear-water environments to strong coupling in browner streams and wetlands. This suggests a baseline autochthonous Bd-DOC pool fuelled by internal production that is gradually overwhelmed by land-derived Bd-DOC as terrestrial influence increases across landscape gradients. The importance of land as a major source of both biologically and photo-chemically degradable DOC for continental watersheds resulted in a partial coupling of those carbon pools in natural freshwaters, despite fundamental contrasts in terms of their composition and regulation.

Characterization of Greenbeard Genes Involved in Long-Distance Kind Discrimination in a Microbial Eukaryote

PubMed Central

Heller, Jens; Zhao, Jiuhai; Rosenfield, Gabriel; Kowbel, David J.; Gladieux, Pierre; Glass, N. Louise

2016-01-01

Microorganisms are capable of communication and cooperation to perform social activities. Cooperation can be enforced using kind discrimination mechanisms in which individuals preferentially help or punish others, depending on genetic relatedness only at certain loci. In the filamentous fungus Neurospora crassa, genetically identical asexual spores (germlings) communicate and fuse in a highly regulated process, which is associated with fitness benefits during colony establishment. Recognition and chemotropic interactions between isogenic germlings requires oscillation of the mitogen-activated protein kinase (MAPK) signal transduction protein complex (NRC-1, MEK-2, MAK-2, and the scaffold protein HAM-5) to specialized cell fusion structures termed conidial anastomosis tubes. Using a population of 110 wild N. crassa isolates, we investigated germling fusion between genetically unrelated individuals and discovered that chemotropic interactions are regulated by kind discrimination. Distinct communication groups were identified, in which germlings within one communication group interacted at high frequency, while germlings from different communication groups avoided each other. Bulk segregant analysis followed by whole genome resequencing identified three linked genes (doc-1, doc-2, and doc-3), which were associated with communication group phenotype. Alleles at doc-1, doc-2, and doc-3 fell into five haplotypes that showed transspecies polymorphism. Swapping doc-1 and doc-2 alleles from different communication group strains was necessary and sufficient to confer communication group affiliation. During chemotropic interactions, DOC-1 oscillated with MAK-2 to the tips of conidial anastomosis tubes, while DOC-2 was statically localized to the plasma membrane. Our data indicate that doc-1, doc-2, and doc-3 function as “greenbeard” genes, involved in mediating long-distance kind recognition that involves actively searching for one’s own type, resulting in cooperation between non-genealogical relatives. Our findings serve as a basis for investigations into the mechanisms associated with attraction, fusion, and kind recognition in other eukaryotic species. PMID:27077707

Permafrost conditions in peatlands regulate magnitude, timing, and chemical composition of catchment dissolved organic carbon export.

PubMed

Olefeldt, David; Roulet, Nigel T

2014-10-01

Permafrost thaw in peatlands has the potential to alter catchment export of dissolved organic carbon (DOC) and thus influence downstream aquatic C cycling. Subarctic peatlands are often mosaics of different peatland types, where permafrost conditions regulate the hydrological setting of each type. We show that hydrological setting is key to observed differences in magnitude, timing, and chemical composition of DOC export between permafrost and nonpermafrost peatland types, and that these differences influence the export of DOC of larger catchments even when peatlands are minor catchment components. In many aspects, DOC export from a studied peatland permafrost plateau was similar to that of a forested upland catchment. Similarities included low annual export (2-3 g C m(-2) ) dominated by the snow melt period (~70%), and how substantial DOC export following storms required wet antecedent conditions. Conversely, nonpermafrost fens had higher DOC export (7 g C m(-2) ), resulting from sustained hydrological connectivity during summer. Chemical composition of catchment DOC export arose from the mixing of highly aromatic DOC from organic soils from permafrost plateau soil water and upland forest surface horizons with nonaromatic DOC from mineral soil groundwater, but was further modulated by fens. Increasing aromaticity from fen inflow to outlet was substantial and depended on both water residence time and water temperature. The role of fens as catchment biogeochemical hotspots was further emphasized by their capacity for sulfate retention. As a result of fen characteristics, a 4% fen cover in a mixed catchment was responsible for 34% higher DOC export, 50% higher DOC concentrations and ~10% higher DOC aromaticity at the catchment outlet during summer compared to a nonpeatland upland catchment. Expansion of fens due to thaw thus has potential to influence landscape C cycling by increasing fen capacity to act as biogeochemical hotspots, amplifying aquatic C cycling, and increasing catchment DOC export. © 2014 John Wiley & Sons Ltd.

Role of Fire and Landscape Position on Dissolved Organic Carbon Composition and Reactivity in the Yukon-Kuskokwim Delta, Alaska

NASA Astrophysics Data System (ADS)

Bristol, E. M.; Dabrowski, J. S.; Jimmie, J. A.; Peter, D. L.; Holmes, R. M.; Mann, P. J.; Natali, S.; Schade, J. D.

2017-12-01

The Yukon-Kuskokwim Delta in southwest, Alaska is characterized by discontinuous permafrost, which is vulnerable to thaw induced by climate change. Recent fires in the delta have caused dramatic changes in the landscape, likely changing carbon dynamics, and potentially altering dissolved organic carbon (DOC) composition and DOC concentrations in aquatic ecosystems. These changes, in turn, likely affect microbial respiration and hydrologic C export from watersheds in the delta. In this study, we investigated how landscape position and fire history drive changes in DOC composition and reactivity in aquatic ecosystems. We surveyed soil pore waters, ponds, fens, and streams at varying landscape positions in burned and unburned landscapes. We also conducted a laboratory experiment to compare the role of photooxidation, photodegradation, and microbial respiration in altering DOC composition and concentration. Surface waters in burned regions were higher in temperature and inorganic nitrogen concentrations. Higher conductivity in burned areas suggests that fire is deepening the water table, causing water to flow through a more mineral soil horizon. While DOC concentrations did not vary significantly by landscape position or fire history, optical properties of DOC suggest that DOC molecular weight is lower in burned regions and decreases along flow paths. Similarly, our incubation experiment indicated that changes in DOC composition are driven by exposure to light more than bacterial respiration, and that photochemical reactivity declines along flow paths. Percent DOC loss was greatest in waters exposed to both light and bacterial, and percent DOC loss from burned watershed waters was correlated with optical properties. Based on our findings, we predict that the combination of increased surface water temperatures, increased inorganic nitrogen concentrations, and lower molecular weight DOC will increase bacterial respiration of DOC in watersheds burned by wildfire. Further research is needed to better understand the changing hydrology in burned tundra, and the relationship between photooxidation and biological mineralization of DOC.

Temporal changes in photoreactivity of dissolved organic carbon and implications for aquatic carbon fluxes from peatlands

NASA Astrophysics Data System (ADS)

Pickard, Amy E.; Heal, Kate V.; McLeod, Andrew R.; Dinsmore, Kerry J.

2017-04-01

Aquatic systems draining peatland catchments receive a high loading of dissolved organic carbon (DOC) from the surrounding terrestrial environment. Whilst photo-processing is known to be an important process in the transformation of aquatic DOC, the drivers of temporal variability in this pathway are less well understood. In this study, 8 h laboratory irradiation experiments were conducted on water samples collected from two contrasting peatland aquatic systems in Scotland: a peatland stream and a reservoir in a catchment with high percentage peat cover. Samples were collected monthly at both sites from May 2014 to May 2015 and from the stream system during two rainfall events. DOC concentrations, absorbance properties and fluorescence characteristics were measured to investigate characteristics of the photochemically labile fraction of DOC. CO2 and CO produced by irradiation were also measured to determine gaseous photoproduction and intrinsic sample photoreactivity. Significant variation was seen in the photoreactivity of DOC between the two systems, with total irradiation-induced changes typically 2 orders of magnitude greater at the high-DOC stream site. This is attributed to longer water residence times in the reservoir rendering a higher proportion of the DOC recalcitrant to photo-processing. During the experimental irradiation, 7 % of DOC in the stream water samples was photochemically reactive and direct conversion to CO2 accounted for 46 % of the measured DOC loss. Rainfall events were identified as important in replenishing photoreactive material in the stream, with lignin phenol data indicating mobilisation of fresh DOC derived from woody vegetation in the upper catchment. This study shows that peatland catchments produce significant volumes of aromatic DOC and that photoreactivity of this DOC is greatest in headwater streams; however, an improved understanding of water residence times and DOC input-output along the source to sea aquatic pathway is required to determine the fate of peatland carbon.

The Universe Adventure - Teachers

Science.gov Websites

Go Teachers The Universe Adventure provides a variety of supplementary resources to bring cosmology Bangs Activity .doc .rtf List of Relevant California Science Standards .doc .rtf Class Discussion Calendar" Activity .doc .rtf Practice with Orders of Magnitude Activity .doc .rtf Ordering the Events

Influence of natural dissolved organic carbon on the bioavailability of mercury to a freshwater alga

USGS Publications Warehouse

Gorski, P.R.; Armstrong, D.E.; Hurley, J.P.; Krabbenhoft, D.P.

2008-01-01

Bioavailability of mercury (Hg) to Selenastrum capricornutum was assessed in bioassays containing field-collected freshwater of varying dissolved organic carbon (DOC) concentrations. Bioconcentration factor (BCF) was measured using stable isotopes of methylmercury (MeHg) and inorganic Hg(II). BCFs for MeHg in low-DOC lake water were significantly larger than those in mixtures of lake water and high-DOC river water. The BCF for MeHg in rainwater (lowest DOC) was the largest of any treatment. Rainwater and lake water also had larger BCFs for Hg(II) than river water. Moreover, in freshwater collected from several US and Canadian field sites, BCFs for Hg(II) and MeHg were low when DOC concentrations were >5 mg L-1. These results suggest high concentrations of DOC inhibit bioavailability, while low concentrations may provide optimal conditions for algal uptake of Hg. However, variability of BCFs at low DOC indicates that DOC composition or other ligands may determine site-specific bioavailability of Hg.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

PubMed

Stegen, James C; Johnson, Tim; Fredrickson, James K; Wilkins, Michael J; Konopka, Allan E; Nelson, William C; Arntzen, Evan V; Chrisler, William B; Chu, Rosalie K; Fansler, Sarah J; Graham, Emily B; Kennedy, David W; Resch, Charles T; Tfaily, Malak; Zachara, John

2018-02-08

The hyporheic corridor (HC) encompasses the river-groundwater continuum, where the mixing of groundwater (GW) with river water (RW) in the HC can stimulate biogeochemical activity. Here we propose a novel thermodynamic mechanism underlying this phenomenon and reveal broader impacts on dissolved organic carbon (DOC) and microbial ecology. We show that thermodynamically favorable DOC accumulates in GW despite lower DOC concentration, and that RW contains thermodynamically less-favorable DOC, but at higher concentrations. This indicates that GW DOC is protected from microbial oxidation by low total energy within the DOC pool, whereas RW DOC is protected by lower thermodynamic favorability of carbon species. We propose that GW-RW mixing overcomes these protections and stimulates respiration. Mixing models coupled with geophysical and molecular analyses further reveal tipping points in spatiotemporal dynamics of DOC and indicate important hydrology-biochemistry-microbial feedbacks. Previously unrecognized thermodynamic mechanisms regulated by GW-RW mixing may therefore strongly influence biogeochemical and microbial dynamics in riverine ecosystems.

XMM-Newton Remote Interface to Science Analysis Software: First Public Version

NASA Astrophysics Data System (ADS)

Ibarra, A.; Gabriel, C.

2011-07-01

We present the first public beta release of the XMM-Newton Remote Interface to Science Analysis (RISA) software, available through the official XMM-Newton web pages. In a nutshell, RISA is a web based application that encapsulates the XMM-Newton data analysis software. The client identifies observations and creates XMM-Newton workflows. The server processes the client request, creates job templates and sends the jobs to a computer. RISA has been designed to help, at the same time, non-expert and professional XMM-Newton users. Thanks to the predefined threads, non-expert users can easily produce light curves and spectra. And on the other hand, expert user can use the full parameter interface to tune their own analysis. In both cases, the VO compliant client/server design frees the users from having to install any specific software to analyze XMM-Newton data.

Fluvial dissolved organic carbon composition varies spatially and seasonally in a small catchment draining a wind farm and felled forestry.

PubMed

Zheng, Ying; Waldron, Susan; Flowers, Hugh

2018-06-01

Assessing whether land use, from activities such as wind farm construction and tree-felling, impacts on terrestrial C delivery to rivers has focused on quantifying the loss of dissolved organic carbon (DOC), and not the composition changes. Here we explore how land use influences DOC composition by considering fluvial DOC concentration, [DOC], and spectrophotometric composition of a river draining a peat-rich catchment. We find that in this 5.7km 2 catchment differences occur in both the concentration and composition of the DOC in its sub-catchments. This is attributed to differences in how land was used: one tributary (D-WF) drains an area with wind farm construction and forestry in the headwaters, and one tributary (D-FF) drains an area with felled plantation trees. Generally, [DOC] in both streams showed similar seasonal variation, and autumn maxima. However, the felled catchment had greater mean [DOC] than the wind farm catchment. The SUVA 254 and E 4 /E 6 indicated DOC in both streams had similar aromaticity and fulvic:humic acid for most of the time, but SUVA 410 and E 2 /E 4 indicated less DOC humification in the felled catchment. This may be due to young DOC from the breakdown of residual branches and roots, or more humification in soils in the wind farm area. During the dry months, DOC composition showed more spatial variation: the D-WF DOC had smaller SUVA 254 (less total aromatic material) and SUVA 410 (fewer humic substances). The decreased E 2 /E 4 in both streams indicated the total aromatic carbon decreased more than humic substances content. Moreover, the larger E 4 /E 6 for D-WF in summer indicated that the humic substances were richer in fulvic acids than humic acids. Soil disturbance associated with forestry-felling likely contributed to the higher [DOC] and release of less-humified material in D-FF. This research indicates drivers of different DOC concentration and composition can exist even in small catchments. Copyright © 2018 Elsevier B.V. All rights reserved.

Comparing Stream DOC Fluxes from Sensor- and Sample-Based Approaches

NASA Astrophysics Data System (ADS)

Shanley, J. B.; Saraceno, J.; Aulenbach, B. T.; Mast, A.; Clow, D. W.; Hood, K.; Walker, J. F.; Murphy, S. F.; Torres-Sanchez, A.; Aiken, G.; McDowell, W. H.

2015-12-01

DOC transport by streamwater is a significant flux that does not consistently show up in ecosystem carbon budgets. In an effort to quantify stream DOC flux, we analyzed three to four years of high-frequency in situ fluorescing dissolved organic matter (FDOM) concentrations and turbidity measured by optical sensors at the five diverse forested and/or alpine headwater sites of the U.S. Geological Survey (USGS) Water, Energy, and Biogeochemical Budgets (WEBB) program. FDOM serves as a proxy for DOC. We also took discrete samples over a range of hydrologic conditions, using both manual weekly and automated event-based sampling. After compensating FDOM for temperature effects and turbidity interference - which was successful even at the high-turbidity Luquillo, PR site -- we evaluated the DOC-FDOM relation based on discrete sample DOC analyses matched to corrected FDOM at the time of sampling. FDOM was a moderately robust predictor of DOC, with r2 from 0.60 to more than 0.95 among sites. We then formed continuous DOC time series by two independent approaches: (1) DOC predicted from FDOM; and (2) the composite method, based on modeled DOC from regression on stream discharge, season, air temperature, and time, forcing the model to observations and adjusting modeled concentrations between observations by linearly-interpolated model residuals. DOC flux from each approach was then computed directly as concentration times discharge. DOC fluxes based on the sensor approach were consistently greater than the sample-based approach. At Loch Vale, CO (2.5 years) and Panola Mountain GA (1 year), the difference was 5-17%. At Sleepers River, VT (3 years), preliminary differences were greater than 20%. The difference is driven by the highest events, but we are investigating these results further. We will also present comparisons from Luquillo, PR, and Allequash Creek, WI. The higher sensor-based DOC fluxes could result from their accuracy during hysteresis, which is difficult to model. In at least one case the higher sensor-based DOC flux was linked to an unsampled event outside the range of the concentration model. Sensors require upkeep and vigilance with the data, but have the potential to yield more accurate fluxes than sample-based approaches.

Modelling impacts of temperature, and acidifying and eutrophying deposition on DOC trends

NASA Astrophysics Data System (ADS)

Sawicka, Kasia; Rowe, Ed; Evans, Chris; Monteith, Don; Vanguelova, Elena; Wade, Andrew; Clark, Joanna

2017-04-01

Surface water dissolved organic carbon (DOC) concentrations in large parts of the northern hemisphere have risen over the past three decades, raising concern about enhanced contributions of carbon to the atmosphere and seas and oceans. The effect of declining acid deposition has been identified as a key control on DOC trends in soil and surface waters, since pH and ionic strength affect sorption and desorption of DOC. However, since DOC is derived mainly from recently-fixed carbon, and organic matter decomposition rates are considered sensitive to temperature, uncertainty persists regarding the extent to the relative importance of different drivers that affect these upward trends. We ran the dynamic model MADOC (Model of Acidity and Soil Organic Carbon) for a range of UK soils (podzols, gleysols and peatland), for which the time-series were available, to consider the likely relative importance of decreased deposition of sulphate and chloride, accumulation of reactive N, and higher temperatures, on DOC production in different soils. Modelled patterns of DOC change generally agreed favourably with measurements collated over 10-20 years, but differed markedly between sites. While the acidifying effect of sulphur deposition appeared to be the predominant control on the observed soil water DOC trends in all the soils considered other than a blanket peat, the model suggested that over the long term, the effects of nitrogen deposition on N-limited soils may have been sufficient to elevate the DOC recovery trajectory significantly. The second most influential cause of rising DOC in the model simulations was N deposition in ecosystems that are N-limited and respond with stimulated plant growth. Although non-marine chloride deposition made some contribution to acidification and recovery, it was not amongst the main drivers of DOC change. Warming had almost no effect on modelled historic DOC trends, but may prove to be a significant driver of DOC in future via its influence on nutrient availability and productivity. This suggests that current and future DOC concentrations could also exceed preindustrial levels due to the increased productivity of N enriched ecosystems, having important implications for drinking water catchment management and the setting and pursuit of appropriate restoration targets.

Catchment-Scale Sampling Reveals the Consistent Function of the Sediment-Water Interface to Remove Landscape Scale Dissolved Organic Carbon Properties

NASA Astrophysics Data System (ADS)

Lee-Cullin, J. A.; Zarnetske, J. P.; Wiewiora, E.; Ruhala, S.; Hampton, T. B.

2016-12-01

Dissolved organic carbon (DOC) is a critical component to biogeochemical cycling and water quality in surface waters. As DOC moves through stream networks, from headwaters to higher order streams, the sediment-water interface (SWI), where streams and groundwater readily interact, exerts a strong influence on DOC concentrations and compositional characteristics (i.e., molecular properties). Few studies examine SWI patterns at larger spatial scales, instead focusing primarily on site-level studies because sampling in the SWI is methodologically time and labor intensive. It is presently unknown how land use and landcover influence the fate of DOC in the SWI and therefore the function of the SWI on catchment-scale DOC conditions. Here, we performed a catchment-scale, high spatial-resolution SWI sampling campaign to test how landscape pattern DOC signatures are propagated into the stream and groundwater, and to assess the fate of these signatures when DOC travels through the SWI. We sampled across 39 sites composed of first-, second-, and third-order locations in a lowland, third-order catchment composed of diverse landscape units and properties, including wetland, upland forest, and agriculture. At each of these locations, surface water, groundwater, and SWI water were collected, including six discrete depths across the SWI. The major land use and landcover properties were also determined for each of these locations. We developed two simple generalized linear models to identify the landscape properties with greatest explanatory power for DOC conditions - one for stream water and one for groundwater. The correlation between landscape properties and surface water DOC characteristics was stronger than between landscape properties and groundwater DOC characteristics. To test if the DOC properties from surface and groundwater were preserved or removed by the SWI, the resulting best-fit models for each water source were used to predict the DOC conditions across the SWI. The models were unable to predict SWI DOC conditions, indicating that the landscape signature present in both the surface water and groundwater is removed by processes occurring in the SWI. Overall, this suggests that the SWI functions as and effective zone for processing the landscape-derived DOC signatures.

Catchment-Scale Sampling Reveals the Consistent Function of the Sediment-Water Interface to Remove Landscape Scale Dissolved Organic Carbon Properties

NASA Astrophysics Data System (ADS)

Lee-Cullin, J. A.; Zarnetske, J. P.; Wiewiora, E.; Ruhala, S.; Hampton, T. B.

2017-12-01

Dissolved organic carbon (DOC) is a critical component to biogeochemical cycling and water quality in surface waters. As DOC moves through stream networks, from headwaters to higher order streams, the sediment-water interface (SWI), where streams and groundwater readily interact, exerts a strong influence on DOC concentrations and compositional characteristics (i.e., molecular properties). Few studies examine SWI patterns at larger spatial scales, instead focusing primarily on site-level studies because sampling in the SWI is methodologically time and labor intensive. It is presently unknown how land use and landcover influence the fate of DOC in the SWI and therefore the function of the SWI on catchment-scale DOC conditions. Here, we performed a catchment-scale, high spatial-resolution SWI sampling campaign to test how landscape pattern DOC signatures are propagated into the stream and groundwater, and to assess the fate of these signatures when DOC travels through the SWI. We sampled across 39 sites composed of first-, second-, and third-order locations in a lowland, third-order catchment composed of diverse landscape units and properties, including wetland, upland forest, and agriculture. At each of these locations, surface water, groundwater, and SWI water were collected, including six discrete depths across the SWI. The major land use and landcover properties were also determined for each of these locations. We developed two simple generalized linear models to identify the landscape properties with greatest explanatory power for DOC conditions - one for stream water and one for groundwater. The correlation between landscape properties and surface water DOC characteristics was stronger than between landscape properties and groundwater DOC characteristics. To test if the DOC properties from surface and groundwater were preserved or removed by the SWI, the resulting best-fit models for each water source were used to predict the DOC conditions across the SWI. The models were unable to predict SWI DOC conditions, indicating that the landscape signature present in both the surface water and groundwater is removed by processes occurring in the SWI. Overall, this suggests that the SWI functions as and effective zone for processing the landscape-derived DOC signatures.

OPeNDAP Server4: Buidling a High-Performance Server for the DAP by Leveraging Existing Software

NASA Astrophysics Data System (ADS)

Potter, N.; West, P.; Gallagher, J.; Garcia, J.; Fox, P.

2006-12-01

OPeNDAP has been working in conjunction with NCAR/ESSL/HAO to develop a modular, high performance data server that will be the successor to the current OPeNDAP data server. The new server, called Server4, is really two servers: A 'Back-End' data server which reads information from various types of data sources and packages the results in DAP objects; and A 'Front-End' which receives client DAP request and then decides how use features of the Back-End data server to build the correct responses. This architecture can be configured in several interesting ways: The Front- and Back-End components can be run on either the same or different machines, depending on security and performance needs, new Front-End software can be written to support other network data access protocols and local applications can interact directly with the Back-End data server. This new server's Back-End component will use the server infrastructure developed by HAO for use with the Earth System Grid II project. Extensions needed to use it as part of the new OPeNDAP server were minimal. The HAO server was modified so that it loads 'data handlers' at run-time. Each data handler module only needs to satisfy a simple interface which both enabled the existing data handlers written for the old OPeNDAP server to be directly used and also simplifies writing new handlers from scratch. The Back-End server leverages high- performance features developed for the ESG II project, so applications that can interact with it directly can read large volumes of data efficiently. The Front-End module of Server4 uses the Java Servlet system in place of the Common Gateway Interface (CGI) used in the past. New front-end modules can be written to support different network data access protocols, so that same server will ultimately be able to support more than the DAP/2.0 protocol. As an example, we will discuss a SOAP interface that's currently in development. In addition to support for DAP/2.0 and prototypical support for a SOAP interface, the new server includes support for the THREDDS cataloging protocol. THREDDS is tightly integrated into the Front-End of Server4. The Server4 Front-End can make full use of the advanced THREDDS features such as attribute specification and inheritance, custom catalogs which segue into automatically generated catalogs as well as providing a default behavior which requires almost no catalog configuration.

An extensible and lightweight architecture for adaptive server applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gorton, Ian; Liu, Yan; Trivedi, Nihar

2008-07-10

Server applications augmented with behavioral adaptation logic can react to environmental changes, creating self-managing server applications with improved quality of service at runtime. However, developing adaptive server applications is challenging due to the complexity of the underlying server technologies and highly dynamic application environments. This paper presents an architecture framework, the Adaptive Server Framework (ASF), to facilitate the development of adaptive behavior for legacy server applications. ASF provides a clear separation between the implementation of adaptive behavior and the business logic of the server application. This means a server application can be extended with programmable adaptive features through the definitionmore » and implementation of control components defined in ASF. Furthermore, ASF is a lightweight architecture in that it incurs low CPU overhead and memory usage. We demonstrate the effectiveness of ASF through a case study, in which a server application dynamically determines the resolution and quality to scale an image based on the load of the server and network connection speed. The experimental evaluation demonstrates the erformance gains possible by adaptive behavior and the low overhead introduced by ASF.« less

eCX: A Secure Infrastructure for E-Course Delivery.

ERIC Educational Resources Information Center

Yau, Joe C. K; Hui, Lucas C. K.; Cheung, Bruce; Yiu, S. M.

2003-01-01

Presents a mechanism, the Secure e-Course eXchange (eCX) designed to protect learning material from unauthorized dissemination, and shows how this mechanism can be integrated in the operation model of online learning course providers. The design of eCX is flexible to fit two operating models, the Institutional Server Model and the Corporate Server…

Automation of high-frequency sampling of environmental waters for reactive species

NASA Astrophysics Data System (ADS)

Kim, H.; Bishop, J. K.; Wood, T.; Fung, I.; Fong, M.

2011-12-01

Trace metals, particularly iron and manganese, play a critical role in some ecosystems as a limiting factor to determine primary productivity, in geochemistry, especially redox chemistry as important electron donors and acceptors, and in aquatic environments as carriers of contaminant transport. Dynamics of trace metals are closely related to various hydrologic events such as rainfall. Storm flow triggers dramatic changes of both dissolved and particulate trace metals concentrations and affects other important environmental parameters linked to trace metal behavior such as dissolved organic carbon (DOC). To improve our understanding of behaviors of trace metals and underlying processes, water chemistry information must be collected for an adequately long period of time at higher frequency than conventional manual sampling (e.g. weekly, biweekly). In this study, we developed an automated sampling system to document the dynamics of trace metals, focusing on Fe and Mn, and DOC for a multiple-year high-frequency geochemistry time series in a small catchment, called Rivendell located at Angelo Coast Range Reserve, California. We are sampling ground and streamwater using the automated sampling system in daily-frequency and the condition of the site is substantially variable from season to season. The ranges of pH of ground and streamwater are pH 5 - 7 and pH 7.8 - 8.3, respectively. DOC is usually sub-ppm, but during rain events, it increases by an order of magnitude. The automated sampling system focuses on two aspects- 1) a modified design of sampler to improve sample integrity for trace metals and DOC and 2) remote controlling system to update sampling volume and timing according to hydrological conditions. To maintain sample integrity, the developed method employed gravity filtering using large volume syringes (140mL) and syringe filters connected to a set of polypropylene bottles and a borosilicate bottle via Teflon tubing. Without filtration, in a few days, the dissolved concentration of Fe and Mn in the ground and streamwater samples stored in low density polyethylene (LDPE) sample bags decreased by 89% and 97%, respectively. In some cases of groundwater, the concentration of Ca decreased by 25%, due to degassing of CO2. However, DOC of the samples in LDPE bags without filtration increased up to 50% in 2 weeks, suggesting contamination from the bag. Performance of the new design was evaluated using the Fe-Mn-spiked Rivendell samples and environmental water samples collected from 1) Rivendell, 2) the Strawberry Creek located at the University of California, Berkeley campus, and 3) the San Francisco Bay. The samples were filtered using the developed method and stored in room temperature in 2 - 3 weeks without further treatment. The method improved the sample integrity significantly; the average recovery rates of Fe, Mn, DOC, and Ca were 92%, 98%, 90%, and 97%, respectively.

Deoxycholate-Enhanced Shigella Virulence Is Regulated by a Rare π-Helix in the Type Three Secretion System Tip Protein IpaD.

PubMed

Bernard, Abram R; Jessop, T Carson; Kumar, Prashant; Dickenson, Nicholas E

2017-12-12

Type three secretion systems (T3SS) are specialized nanomachines that support infection by injecting bacterial proteins directly into host cells. The Shigella T3SS has uniquely evolved to sense environmental levels of the bile salt deoxycholate (DOC) and upregulate virulence in response to DOC. In this study, we describe a rare i + 5 hydrogen bonding secondary structure element (π-helix) within the type three secretion system tip protein IpaD that plays a critical role in DOC-enhanced virulence. Specifically, engineered mutations within the π-helix altered the pathogen's response to DOC, with one mutant construct in particular exhibiting an unprecedented reduction in virulence following DOC exposure. Fluorescence polarization binding assays showed that these altered DOC responses are not the result of differences in affinity between IpaD and DOC, but rather differences in the DOC-dependent T3SS tip maturation resulting from binding of IpaD to translocator/effector protein IpaB. Together, these findings begin to uncover the complex mechanism of DOC-enhanced Shigella virulence while identifying an uncommon structural element that may provide a much needed target for non-antibiotic treatment of Shigella infection.

Character, quality and bioavailability of Dissolved Organic Carbon (DOC) in a boreal stream network (Invited)

NASA Astrophysics Data System (ADS)

Laudon, H.; Berggren, M.; Agren, A.; Jansson, M.

2010-12-01

The conceptual understanding of the role of terrestrially derived dissolved organic carbon (DOC) in freshwaters has been changing rapidly. While it was once considered mainly a pool of recalcitrant compounds, DOC is now better known for its interactivity and ability to affect both the biogeochemistry and ecology of streams, rivers and lakes. Here we summarize the recent work from the multi-investigatory project conducted in the Krycklan Catchment Study in Sweden with an emphasis on the spatial and temporal variability of the character and bioavailability of DOC. In total, 15 streams and their adjacent soils have been investigated. The streams cover a forest-wetland gradient, spanning from 0% to 69% wetland coverage (hence with a 100% to 31% forest cover). Lower values of the ratio between absorbance measured at 254 nm and 365 nm (A254/A365), in both soil plots and streams, indicated that wetland-derived DOC has a higher average molecular weight than forest DOC. Higher SUVA254 (DOC specific ultraviolet absorption at 254 nm) in wetland runoff indicated more aromatic DOC from wetlands than forests. In accordance, low molecular weight non-aromatic compounds such as free organic acids (OA), amino acids (AA) and carbohydrates (CH) had higher quantities in the forested streams. We have shown that a variety of the OA, AA and CH compounds can be significantly assimilated by bacteria, meeting 15-100% of the bacterial carbon demand and explaining most of the observed variance in bacterial growth efficiency. We can now also show that in small homogenous catchments, the hydrological functioning provides a first order control on the temporal variability of stream water DOC and its quality. As a consequence, streams with heterogeneous catchments undergo a temporal switch in the DOC source. In a typical boreal catchment of 10-20% wetlands, DOC originates predominantly from wetland sources during low flow conditions whereas the major source of DOC originates from forested areas of the catchment during high flow resulting in dramatic shifts in the character and bioavailability of DOC during different flow conditions. By connecting knowledge about the sources and quality of DOC with detailed hydrological process understanding, an improved representation of stream water DOC regulation can be provided. This work also illustrates that the sensitivity of stream water DOC in the boreal landscape ultimately depends on how individual landscape elements are affected, the proportion of these landscape elements and how these changes are propagated downstream.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stegen, James C.; Johnson, Tim; Fredrickson, James K.

The hyporheic corridor (HC) is a critical component of riverine ecosystems that encompasses the river-11 groundwater continuum. The mixing of groundwater (GW) with river water (RW) in the HC can 12 stimulate biogeochemical activity, and here we (i) propose a novel thermodynamic mechanism 13 underlying this phenomenon, and (ii) reveal broader impacts on dissolved organic carbon (DOC) 14 biogeochemistry and microbial ecology. We show that thermodynamically-favorable DOC 15 accumulates in GW despite decreases in DOC concentration along subsurface flow paths, and that RW 16 contains less thermodynamically-favorable DOC, but at higher concentrations. This indicates that DOC 17 in GW ismore » protected from microbial oxidation by low total energy contained within the DOC pool, while 18 RW DOC is protected by lower thermodynamic favorability of carbon species. We propose that GW-19 RW mixing overcomes these protection mechanisms and stimulates respiration. Mixing models 20 coupled with time-lapse electrical resistance tomography revealed that stimulated respiration leads 21 to tipping points in spatiotemporal dynamics of DOC across the HC. Further, shifts in DOC speciation 22 and biochemical pathways were associated with shifts in microbiome composition, highlighting 23 feedbacks among hydrology, DOC biochemistry, and microbial ecology. These results reveal that 24 previously unrecognized thermodynamic-based mechanisms regulated by GW-RW mixing can strongly 25 influence biogeochemical and microbial dynamics in riverine ecosystems.« less

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

DOE PAGES

Stegen, James C.; Johnson, Tim; Fredrickson, James K.; ...

2018-02-08

The hyporheic corridor (HC) is a critical component of riverine ecosystems that encompasses the river-11 groundwater continuum. The mixing of groundwater (GW) with river water (RW) in the HC can 12 stimulate biogeochemical activity, and here we (i) propose a novel thermodynamic mechanism 13 underlying this phenomenon, and (ii) reveal broader impacts on dissolved organic carbon (DOC) 14 biogeochemistry and microbial ecology. We show that thermodynamically-favorable DOC 15 accumulates in GW despite decreases in DOC concentration along subsurface flow paths, and that RW 16 contains less thermodynamically-favorable DOC, but at higher concentrations. This indicates that DOC 17 in GW ismore » protected from microbial oxidation by low total energy contained within the DOC pool, while 18 RW DOC is protected by lower thermodynamic favorability of carbon species. We propose that GW-19 RW mixing overcomes these protection mechanisms and stimulates respiration. Mixing models 20 coupled with time-lapse electrical resistance tomography revealed that stimulated respiration leads 21 to tipping points in spatiotemporal dynamics of DOC across the HC. Further, shifts in DOC speciation 22 and biochemical pathways were associated with shifts in microbiome composition, highlighting 23 feedbacks among hydrology, DOC biochemistry, and microbial ecology. These results reveal that 24 previously unrecognized thermodynamic-based mechanisms regulated by GW-RW mixing can strongly 25 influence biogeochemical and microbial dynamics in riverine ecosystems.« less

Ursodeoxycholic and deoxycholic acids: Differential effects on intestinal Ca(2+) uptake, apoptosis and autophagy of rat intestine.

PubMed

Rodríguez, Valeria A; Rivoira, María A; Pérez, Adriana del V; Marchionatti, Ana M; Tolosa de Talamoni, Nori G

2016-02-01

The aim of this work was to study the effect of sodium deoxycholate (NaDOC) and ursodeoxycholic acid (UDCA) on Ca(2+) uptake by enterocytes and the underlying mechanisms. Rats were divided into four groups: a) controls, b) treated with NaDOC, c) treated with UDCA d) treated with NaDOC and UDCA. Ca(2+) uptake was studied in enterocytes with different degrees of maturation. Apoptosis, autophagy and NO content and iNOS protein expression were evaluated. NaDOC decreased and UDCA increased Ca(2+) uptake only in mature enterocytes. The enhancement of protein expression of Fas, FasL, caspase-8 and caspase-3 activity by NaDOC indicates triggering of the apoptotic extrinsic pathway, which was blocked by UDCA. NO content and iNOS protein expression were enhanced by NaDOC, and avoided by UDCA. The increment of acidic vesicular organelles and LC3 II produced by NaDOC was also prevented by UDCA. In conclusion, the inhibitory effects of NaDOC on intestinal Ca(2+) absorption occur by decreasing the Ca(2+) uptake by mature enterocytes. NaDOC triggers apoptosis and autophagy, in part as a result of nitrosative stress. In contrast, UDCA increases the Ca(2+) uptake by mature enterocytes, and in combination with NaDOC acts as an antiapoptotic and antiautophagic agent normalizing the transcellular Ca(2+) pathway. Copyright © 2015 Elsevier Inc. All rights reserved.

Mineralocorticoid receptor blockade but not steroid withdrawal reverses renal fibrosis in deoxycorticosterone/salt rats.

PubMed

Lam, Emily Y M; Funder, John W; Nikolic-Paterson, David J; Fuller, Peter J; Young, Morag J

2006-07-01

The pathophysiologic effects of nonepithelial mineralocorticoid receptor (MR) activation include vascular inflammation followed by renal and cardiac remodeling in experimental animals. We have recently shown that MR blockade can reverse established cardiac fibrosis and vascular inflammation; the present study explores whether a similar protection is seen in renal tissue. Rats were uninephrectomized and maintained on 0.9% NaCl solution to drink and treated as follows: control, vehicle; deoxycorticosterone (DOC), 20 mg/wk sc for 4 wk and then killed; DOC for 8 wk; DOC for 4 wk and no steroid for wk 5-8; DOC for 8 wk and eplerenone 100 mg/kg.d in the food for wk 5-8. DOC increased renal collagen at 4 and 8 wk; rats given DOC for 4 wk and killed at 8 wk showed levels of fibrosis identical with those killed at 4 wk, whereas rats given DOC for 8 wk plus eplerenone for wk 5-8 were indistinguishable from control. The inflammatory markers ED-1, osteopontin, and cyclooxygenase-2 remained significantly elevated despite the withdrawal of DOC (DOC404), whereas eplerenone restored cyclooxygenase-2 expression (but not that of ED-1 or osteopontin) to control levels. In addition, markers of oxidative stress and TGFbeta were determined. We hypothesize that continuing tubular inflammation and fibrosis despite DOC withdrawal indicates that the renal tissue may reflect MR activation in the context of tissue damage.

Regulation of stream water dissolved organic carbon concentrations ([DOC]) during snowmelt in forest streams; the role of discharge, winter climate and memory effects

NASA Astrophysics Data System (ADS)

Ågren, A.; Haei, M.; Öquist, M.; Buffam, I.; Ottosson-Löfvenius, M.; Kohler, S.; Bishop, K.; Blomkvist, P.; Laudon, H.

2011-12-01

Using 15 year stream records from two forested northern boreal catchments, coupled with soil frost experiments in the riparian zone, we demonstrate the complex inter-annual control on [DOC] and export during snowmelt. Stream [DOC] varied by a factor of 2 during those 15 years with no consistent trend. Based on our long-term analysis, we demonstrate, for the first time, that stream water [DOC] is strongly linked to the climatic conditions during the preceding winter, but that there is also a long-term memory effect in the catchment soils, related to the extent of the previous export from the catchment. Hydrology had a first order control on the inter-annual variation in concentrations, and the length of the winter was more important than the memory effect. By removing the effect of discharge on [DOC], using a conceptual hydrological model, we could detect processes that would otherwise have been overshadowed. A short and intense snowmelt gave higher [DOC] in the stream. During a prolonged snowmelt, one soil layer at the time might have been "flushed" from easily exported DOC, resulting in slightly lower stream [DOC] during such years. We found that longer and colder winters resulted in higher [DOC] during the subsequent snowmelt. A soil frost manipulation experiment in the riparian soils of the study catchment showed that the DOC concentrations in the soil water increased with the duration of the soil frost. A high antecedent DOC export during the preceding summer and autumn resulted in lower concentrations during the following spring, indicating a long-term "memory effect" of the catchment soils. In a nearby stream draining mire, we found a different response to hydrology but similar response to climate and memory effect. The inter-annual variation in snowmelt DOC exports was mostly controlled by the amount of runoff, but the variability in [DOC] also exerted a significant control on the exports, accounting for 15% of the variance in exports. We conclude that winter climatic conditions can play a substantial role in controlling stream [DOC] in ways not previously understood. These findings are especially important for northern latitude regions expected to be most affected by climate change. It's difficult to directly translate this to a future climate change prediction. If warmer winters with less insulating snow cover increase the soil frost, the results from the soil frost manipulation experiment then suggest increasing [DOC] in a future climate. At the same time the statistical analysis of the stream records suggest that a shorter and warmer winter would decrease the [DOC]. Our results do, however, highlight the role of winter climate for regulating DOC in areas with seasonally frozen soils which should be considered when resolving the sensitivity of stream [DOC] to global environmental change.

Impact of hurricanes on the flux of rainwater and Cape Fear River water dissolved organic carbon to Long Bay, southeastern United States

NASA Astrophysics Data System (ADS)

Avery, G. Brooks; Kieber, Robert J.; Willey, Joan D.; Shank, G. Christopher; Whitehead, Robert F.

2004-09-01

The hurricane flux of rain and river water dissolved organic carbon (DOC) to Long Bay located on the southeastern coast of the United States was determined for four hurricanes that made landfall in the Cape Fear region of North Carolina. Riverine flux of DOC following hurricanes Fran (1996) and Floyd (1999) represented one third and one half of the entire annual river flux of DOC to Long Bay, respectively. The majority of this DOC was recalcitrant and not available for biological consumption. The high flux of DOC from hurricane Floyd resulted from extremely high precipitation amounts (in excess of 50 cm) associated with the hurricane and subsequent flooding. High riverine DOC fluxes were observed following hurricane Fran but not hurricanes Bertha (1996) and Bonnie (1998). The westerly path of Fran deposited rain inland along the Cape Fear River watershed, causing high river flow conditions, while Bonnie and Bertha took an eastern path, resulting in a minimal effect to the Cape Fear River flow rates. The rainwater flux of total DOC to Long Bay from the four hurricanes was not as dramatic as that observed for riverine fluxes. However, unlike river water DOC that is refractory, rainwater DOC is highly labile. Rainwater from the four hurricanes in this study deposited 2-5 times the DOC deposited in an average storm. This represented a flux of 3-9% of the entire annual budget of bioavailable DOC to Long Bay being deposited over a 1 or 2 day period, likely spurring short-term secondary productivity following the hurricanes.

Sources, bioavailability, and photoreactivity of dissolved organic carbon in the Sacramento-San Joaquin River Delta

USGS Publications Warehouse

Stepanauskas, R.; Moran, M.A.; Bergamaschi, B.A.; Hollibaugh, J.T.

2005-01-01

We analyzed bioavailability, photoreactivity, fluorescence, and isotopic composition of dissolved organic carbon (DOC) collected at 13 stations in the Sacramento-San Joaquin River Delta during various seasons to estimate the persistence of DOC from diverse shallow water habitat sources. Prospective large-scale wetland restorations in the Delta may change the amount of DOC available to the food web as well as change the quality of Delta water exported for municipal use. Our study indicates that DOC contributed by Delta sources is relatively refractory and likely mostly the dissolved remnants of vascular plant material from degrading soils and tidal marshes rather than phytoplankton production. Therefore, the prospective conversion of agricultural land into submerged, phytoplankton-dominated habitats may reduce the undesired export of DOC from the Delta to municipal users. A median of 10% of Delta DOC was rapidly utilizable by bacterioplankton. A moderate dose of simulated solar radiation (286 W m-2 for 4 h) decreased the DOC bioavailability by an average of 40%, with a larger relative decrease in samples with higher initial DOC bioavailability. Potentially, a DOC-based microbial food web could support ???0.6 ?? 109 g C of protist production in the Delta annually, compared to ???17 ?? 109 g C phytoplankton primary production. Thus, DOC utilization via the microbial food web is unlikely to play an important role in the nutrition of Delta zooplankton and fish, and the possible decrease in DOC concentration due to wetland restoration is unlikely to have a direct effect on Delta fish productivity. ?? Springer 2005.

Intrinsic Controls of Groundwater-Surface Water Dissolved Organic Carbon Quality and Quantity on Hyporheic Carbon Oxidation.

NASA Astrophysics Data System (ADS)

Garayburu-Caruso, V. A.; Stegen, J.; Graham, E.

2017-12-01

Inputs of dissolved organic carbon (DOC) and nutrients from groundwater (GW) and surface water (SW) to the hyporheic zone strongly influence biogeochemical processes. Despite increased research efforts, we still lack a mechanistic understanding of the conditions driving elevated hyporheic metabolism. This work explores hyporheic carbon oxidation from a thermodynamic perspective by evaluating changes in metabolic rates within hyporheic zone sediments in response to changes on DOC concentration and thermodynamic profiles that are characteristic of GW and SW sources. We hypothesize that GW DOC is protected from microbial oxidation due to low concentration and that SW DOC is protected due low thermodynamic favorability. Further, we propose that GW-SW mixing can simultaneously overcome both limitations and stimulate carbon oxidation. Hyporheic sediments from the Hanford site in Richland, WA were exposed to ambient, 2-,5- and 10-fold concentrations of natural DOC from SW and GW sources, separately, and incubated at in-situ temperature. The two DOC sources supply contrasting thermodynamic profiles, with GW providing lower concentration but more thermodynamically favorable DOC and SW higher concentration, more recalcitrant DOC. Across DOC treatments we characterized time series of oxygen concentration, DOC concentration, and pH as well as endpoint measurements of DOC thermodynamics using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS). Our results suggest that hyporheic metabolism of distinct carbon pools (GW or SW) can be limited by concentration or thermodynamic favorability. Our work provides an experimental approach to contribute to mechanistic understanding of freshwater carbon oxidation, and a process-based foundation for the development of watershed-scale hydrobiogeochemical models.

Modeling nonlinear responses of DOC transport in boreal catchments in Sweden

NASA Astrophysics Data System (ADS)

Kasurinen, Ville; Alfredsen, Knut; Ojala, Anne; Pumpanen, Jukka; Weyhenmeyer, Gesa A.; Futter, Martyn N.; Laudon, Hjalmar; Berninger, Frank

2016-07-01

Stream water dissolved organic carbon (DOC) concentrations display high spatial and temporal variation in boreal catchments. Understanding and predicting these patterns is a challenge with great implications for water quality projections and carbon balance estimates. Although several biogeochemical models have been used to estimate stream water DOC dynamics, model biases common during both rain and snow melt-driven events. The parsimonious DOC-model, K-DOC, with 10 calibrated parameters, uses a nonlinear discharge and catchment water storage relationship including soil temperature dependencies of DOC release and consumption. K-DOC was used to estimate the stream water DOC concentrations over 5 years for eighteen nested boreal catchments having total area of 68 km2 (varying from 0.04 to 67.9 km2). The model successfully simulated DOC concentrations during base flow conditions, as well as, hydrological events in catchments dominated by organic and mineral soils reaching NSEs from 0.46 to 0.76. Our semimechanistic model was parsimonious enough to have all parameters estimated using statistical methods. We did not find any clear differences between forest and mire-dominated catchments that could be explained by soil type or tree species composition. However, parameters controlling slow release and consumption of DOC from soil water behaved differently for small headwater catchments (less than 2 km2) than for those that integrate larger areas of different ecosystem types (10-68 km2). Our results emphasize that it is important to account for nonlinear dependencies of both, soil temperature, and catchment water storage, when simulating DOC dynamics of boreal catchments.

Close-Out Report: North Area, Revision 0, LCP Chemicals-Georgia, Brunswick, Georgia

EPA Pesticide Factsheets

December 1997 removal close-out report to document response activities in areas north of B-Street at the LCP Chemicals Superfund Site, GA. Region ID: 04 DocID: 10879193, DocDate: 12-01-1997 Region ID: 04 DocID: 10879193, DocDate: 12-01-1997

78 FR 64257 - Self-Regulatory Organizations; NYSE Arca, Inc.; Notice of Designation of a Longer Period for...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-10-28

... October 15, 2013; Michael J. Simon, Secretary, ISE, dated October 16, 2013; and Harris Bock, Chief... to delegated authority.\\7\\ \\7\\ 17 CFR 200.30-3(a)(31). Kevin M. O'Neill, Deputy Secretary. [FR Doc...

Preliminary appraisal of hydrogen and methane fuel in a Mach 2.7 supersonic transport

NASA Technical Reports Server (NTRS)

Whitlow, J. B., Jr.; Weber, R. J.; Civinskas, K. C.

1972-01-01

The higher heating value of hydrogen relative to JP fuel is estimated to reduce fuel weight by three fold and gross weight by 40 percent for comparable designed airplanes of equal payload and range. Engine design parameters were varied to determine the influence of lower noise goals on gross weight and direct operating cost. At current fuel prices, the DOC of a hydrogen airplane would be much higher than that of a JP airplane. A methane airplane could offer an 8.5-percent lower KOC than JP. But future shortages may escalate the prices of both JP and methane, whereas the price of hydrogen manufactured hydrolytically could be reduced from present levels. If in the future all three fuels are postulated to have equal costs per unit of energy, the DOC for hydrogen could be as much as 20 percent below that for JP on the reference 4000-nautical-mile mission. Longer ranges or lower noise requirements would improve the advantage of hydrogen.

Energy Efficiency in Small Server Rooms: Field Surveys and Findings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cheung, Iris; Greenberg, Steve; Mahdavi, Roozbeh

Fifty-seven percent of US servers are housed in server closets, server rooms, and localized data centers, in what are commonly referred to as small server rooms, which comprise 99percent of all server spaces in the US. While many mid-tier and enterprise-class data centers are owned by large corporations that consider energy efficiency a goal to minimize business operating costs, small server rooms typically are not similarly motivated. They are characterized by decentralized ownership and management and come in many configurations, which creates a unique set of efficiency challenges. To develop energy efficiency strategies for these spaces, we surveyed 30 smallmore » server rooms across eight institutions, and selected four of them for detailed assessments. The four rooms had Power Usage Effectiveness (PUE) values ranging from 1.5 to 2.1. Energy saving opportunities ranged from no- to low-cost measures such as raising cooling set points and better airflow management, to more involved but cost-effective measures including server consolidation and virtualization, and dedicated cooling with economizers. We found that inefficiencies mainly resulted from organizational rather than technical issues. Because of the inherent space and resource limitations, the most effective measure is to operate servers through energy-efficient cloud-based services or well-managed larger data centers, rather than server rooms. Backup power requirement, and IT and cooling efficiency should be evaluated to minimize energy waste in the server space. Utility programs are instrumental in raising awareness and spreading technical knowledge on server operation, and the implementation of energy efficiency measures in small server rooms.« less

Study of the costs and benefits of composite materials in advanced turbofan engines

NASA Technical Reports Server (NTRS)

Steinhagen, C. A.; Stotler, C. L.; Neitzel, R. E.

1974-01-01

Composite component designs were developed for a number of applicable engine parts and functions. The cost and weight of each detail component was determined and its effect on the total engine cost to the aircraft manufacturer was ascertained. The economic benefits of engine or nacelle composite or eutectic turbine alloy substitutions was then calculated. Two time periods of engine certification were considered for this investigation, namely 1979 and 1985. Two methods of applying composites to these engines were employed. The first method just considered replacing an existing metal part with a composite part with no other change to the engine. The other method involved major engine redesign so that more efficient composite designs could be employed. Utilization of polymeric composites wherever payoffs were available indicated that a total improvement in Direct Operating Cost (DOC) of 2.82 to 4.64 percent, depending on the engine considered, could be attained. In addition, the percent fuel saving ranged from 1.91 to 3.53 percent. The advantages of using advanced materials in the turbine are more difficult to quantify but could go as high as an improvement in DOC of 2.33 percent and a fuel savings of 2.62 percent. Typically, based on a fleet of one hundred aircraft, a percent savings in DOC represents a savings of four million dollars per year and a percent of fuel savings equals 23,000 cu m (7,000,000 gallons) per year.

[Interactions of straw, nitrogen fertilizer and bacterivorous nematodes on soil labile carbon and nitrogen and greenhouse gas emissions].

PubMed

Zhang, Teng-Hao; Wang, Nan; Liu, Man-Qiang; Li, Fang-Hui; Zhu, Kang-Li; Li, Hui-Xin; Hu, Feng

2014-11-01

A 3 x 2 factorial design of microcosm experiment was conducted to investigate the interactive effects of straw, nitrogen fertilizer and bacterivorous nematodes on soil microbial biomass carbon (C(mic)) and nitrogen (N(mic)), dissolved organic carbon (DOC) and nitrogen (DON), mineral nitrogen (NH(4+)-N and NO(3-)-N), and greenhouse gas (CO2, N2O and CH4) emissions. Results showed that straw amendment remarkably increased the numbers of bacterivorous nematodes and the contents of Cmic and Nmic, but Cmic and Nmic decreased with the increasing dose of nitrogen fertilization. The effects of bacterivorous nematodes strongly depended on either straw or nitrogen fertilization. The interactions of straw, nitrogen fertilization and bacterivorous nematodes on soil DOC, DON and mineral nitrogen were strong. Straw and nitrogen fertilization increased DOC and mineral nitrogen contents, but their influences on DON depended on the bacterivorous nematodes. The DOC and mineral nitrogen were negatively and positively influenced by the bacterivorous nematodes, re- spectively. Straw significantly promoted CO2 and N2O emissions but inhibited CH4 emission, while interactions between nematodes and nitrogen fertilization on emissions of greenhouse gases were obvious. In the presence of straw, nematodes increased cumulative CO2 emissions with low nitrogen fertilization, but decreased CO2 and N2O emissions with high nitrogen fertilization on the 56th day after incubation. In summary, mechanical understanding the soil ecological process would inevitably needs to consider the roles of soil microfauna.

Predictor - Predictive Reaction Design via Informatics, Computation and Theories of Reactivity

DTIC Science & Technology

2017-10-10

into more complex and valuable molecules, but are limited by: 1. The extensive time it takes to design and optimize a synthesis 2. Multi-step...system. As it is fully compatible to the industry standard SQL, designing a server- based system at a later time will be trivial. Producing a JAVA front...Report: PREDICTOR - Predictive REaction Design via Informatics, Computation and Theories of Reactivity The goal of this program was to create a cyber

Web Application Design Using Server-Side JavaScript

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hampton, J.; Simons, R.

1999-02-01

This document describes the application design philosophy for the Comprehensive Nuclear Test Ban Treaty Research & Development Web Site. This design incorporates object-oriented techniques to produce a flexible and maintainable system of applications that support the web site. These techniques will be discussed at length along with the issues they address. The overall structure of the applications and their relationships with one another will also be described. The current problems and future design changes will be discussed as well.

Cybersecurity, massive data processing, community interaction, and other developments at WWW-based computational X-ray Server

NASA Astrophysics Data System (ADS)

Stepanov, Sergey

2013-03-01

X-Ray Server (x-server.gmca.aps.anl.gov) is a WWW-based computational server for modeling of X-ray diffraction, reflection and scattering data. The modeling software operates directly on the server and can be accessed remotely either from web browsers or from user software. In the later case the server can be deployed as a software library or a data fitting engine. As the server recently surpassed the milestones of 15 years online and 1.5 million calculations, it accumulated a number of technical solutions that are discussed in this paper. The developed approaches to detecting physical model limits and user calculations failures, solutions to spam and firewall problems, ways to involve the community in replenishing databases and methods to teach users automated access to the server programs may be helpful for X-ray researchers interested in using the server or sharing their own software online.

Effect of video server topology on contingency capacity requirements

NASA Astrophysics Data System (ADS)

Kienzle, Martin G.; Dan, Asit; Sitaram, Dinkar; Tetzlaff, William H.

1996-03-01

Video servers need to assign a fixed set of resources to each video stream in order to guarantee on-time delivery of the video data. If a server has insufficient resources to guarantee the delivery, it must reject the stream request rather than slowing down all existing streams. Large scale video servers are being built as clusters of smaller components, so as to be economical, scalable, and highly available. This paper uses a blocking model developed for telephone systems to evaluate video server cluster topologies. The goal is to achieve high utilization of the components and low per-stream cost combined with low blocking probability and high user satisfaction. The analysis shows substantial economies of scale achieved by larger server images. Simple distributed server architectures can result in partitioning of resources with low achievable resource utilization. By comparing achievable resource utilization of partitioned and monolithic servers, we quantify the cost of partitioning. Next, we present an architecture for a distributed server system that avoids resource partitioning and results in highly efficient server clusters. Finally, we show how, in these server clusters, further optimizations can be achieved through caching and batching of video streams.

Effect of diesel oxidation catalysts on the diesel particulate filter regeneration process.

PubMed

Lizarraga, Leonardo; Souentie, Stamatios; Boreave, Antoinette; George, Christian; D'Anna, Barbara; Vernoux, Philippe

2011-12-15

A Diesel Particulate Filter (DPF) regeneration process was investigated during aftertreatment exhaust of a simulated diesel engine under the influence of a Diesel Oxidation Catalyst (DOC). Aerosol mass spectrometry analysis showed that the presence of the DOC decreases the Organic Carbon (OC) fraction adsorbed to soot particles. The activation energy values determined for soot nanoparticles oxidation were 97 ± 5 and 101 ± 8 kJ mol(-1) with and without the DOC, respectively; suggesting that the DOC does not facilitate elementary carbon oxidation. The minimum temperature necessary for DPF regeneration was strongly affected by the presence of the DOC in the aftertreatment. The conversion of NO to NO(2) inside the DOC induced the DPF regeneration process at a lower temperature than O(2) (ΔT = 30 K). Also, it was verified that the OC fraction, which decreases in the presence of the DOC, plays an important role to ignite soot combustion.

CDOM fluorescence as a proxy of DOC concentration in natural waters: a comparison of four contrasting tropical systems.

PubMed

Rochelle-Newall, E; Hulot, F D; Janeau, J L; Merroune, A

2014-01-01

Chromophoric dissolved organic matter (CDOM) fluorescence or absorption is often proposed as a rapid alternative to chemical methods for the estimation of bulk dissolved organic carbon (DOC) concentration in natural waters. However, the robustness of this method across a wide range of systems remains to be shown. We measured CDOM fluorescence and DOC concentration in four tropical freshwater and coastal environments (estuary and coastal, tropical shallow lakes, water from the freshwater lens of two small islands, and soil leachates). We found that although this method can provide an estimation of DOC concentration in sites with low variability in DOC and CDOM sources in systems where the variability of DOC and CDOM sources are high, this method should not be used as it will lead to errors in the estimation of the bulk DOC concentration.

Development of mobile platform integrated with existing electronic medical records.

PubMed

Kim, YoungAh; Kim, Sung Soo; Kang, Simon; Kim, Kyungduk; Kim, Jun

2014-07-01

This paper describes a mobile Electronic Medical Record (EMR) platform designed to manage and utilize the existing EMR and mobile application with optimized resources. We structured the mEMR to reuse services of retrieval and storage in mobile app environments that have already proven to have no problem working with EMRs. A new mobile architecture-based mobile solution was developed in four steps: the construction of a server and its architecture; screen layout and storyboard making; screen user interface design and development; and a pilot test and step-by-step deployment. This mobile architecture consists of two parts, the server-side area and the client-side area. In the server-side area, it performs the roles of service management for EMR and documents and for information exchange. Furthermore, it performs menu allocation depending on user permission and automatic clinical document architecture document conversion. Currently, Severance Hospital operates an iOS-compatible mobile solution based on this mobile architecture and provides stable service without additional resources, dealing with dynamic changes of EMR templates. The proposed mobile solution should go hand in hand with the existing EMR system, and it can be a cost-effective solution if a quality EMR system is operated steadily with this solution. Thus, we expect this example to be shared with hospitals that currently plan to deploy mobile solutions.

Development of Mobile Platform Integrated with Existing Electronic Medical Records

PubMed Central

Kim, YoungAh; Kang, Simon; Kim, Kyungduk; Kim, Jun

2014-01-01

Objectives This paper describes a mobile Electronic Medical Record (EMR) platform designed to manage and utilize the existing EMR and mobile application with optimized resources. Methods We structured the mEMR to reuse services of retrieval and storage in mobile app environments that have already proven to have no problem working with EMRs. A new mobile architecture-based mobile solution was developed in four steps: the construction of a server and its architecture; screen layout and storyboard making; screen user interface design and development; and a pilot test and step-by-step deployment. This mobile architecture consists of two parts, the server-side area and the client-side area. In the server-side area, it performs the roles of service management for EMR and documents and for information exchange. Furthermore, it performs menu allocation depending on user permission and automatic clinical document architecture document conversion. Results Currently, Severance Hospital operates an iOS-compatible mobile solution based on this mobile architecture and provides stable service without additional resources, dealing with dynamic changes of EMR templates. Conclusions The proposed mobile solution should go hand in hand with the existing EMR system, and it can be a cost-effective solution if a quality EMR system is operated steadily with this solution. Thus, we expect this example to be shared with hospitals that currently plan to deploy mobile solutions. PMID:25152837

Google Docs in an Out-of-Class Collaborative Writing Activity

ERIC Educational Resources Information Center

Zhou, Wenyi; Simpson, Elizabeth; Domizi, Denise Pinette

2012-01-01

Google Docs, an online word processing application, is a promising tool for collaborative learning. However, many college instructors and students lack knowledge to effectively use Google Docs to enhance teaching and learning. Goals of this study include (1) assessing the effectiveness of using Google Docs in an out-of-class collaborative writing…

49 CFR 22.57 - Loan reporting requirements.

Code of Federal Regulations, 2012 CFR

2012-10-01

....dot.gov/financial/docs/Loan_Activation_DOT_F_2303-1.pdf. The Participating Lender must also provide....osdbu.dot.gov/financial/docs/Loan_Close-Out_DOT_F_2304-1.pdf. To fulfill this requirement, the....dot.gov/financial/docs/Pending_Loan_DOT_F_2306-1.xls and http://www.osdbu.dot.gov/financial/docs...

49 CFR 22.57 - Loan reporting requirements.

Code of Federal Regulations, 2013 CFR

2013-10-01

....dot.gov/financial/docs/Loan_Activation_DOT_F_2303-1.pdf. The Participating Lender must also provide....osdbu.dot.gov/financial/docs/Loan_Close-Out_DOT_F_2304-1.pdf. To fulfill this requirement, the....dot.gov/financial/docs/Pending_Loan_DOT_F_2306-1.xls and http://www.osdbu.dot.gov/financial/docs...

49 CFR 22.57 - Loan reporting requirements.

Code of Federal Regulations, 2014 CFR

2014-10-01

....dot.gov/financial/docs/Loan_Activation_DOT_F_2303-1.pdf. The Participating Lender must also provide....osdbu.dot.gov/financial/docs/Loan_Close-Out_DOT_F_2304-1.pdf. To fulfill this requirement, the....dot.gov/financial/docs/Pending_Loan_DOT_F_2306-1.xls and http://www.osdbu.dot.gov/financial/docs...

Light absorption properties of colored dissolved organic matter (CDOM) in adjacent waters of the Changjiang Estuary during a flood season: implication for DOC estimation

NASA Astrophysics Data System (ADS)

Liu, Yangyang; Shen, Fang; Li, Xiuzhen

2014-11-01

Light absorption properties of colored dissolved organic matter (CDOM) in adjacent waters of the Changjiang Estuary were investigated during the summer of 2013. CDOM absorption showed a substantial portion of the total absorption and clearly dominant among most investigation stations. It generally decreased from the northwest to the southeast, which controlled by physical mixing of fresh water and seawater as was indicated by a conservative behaviour of CDOM. CDOM absorption sharply increased during phytoplankton blooms. Similarly, dissolved organic carbon (DOC) also peaked during blooms period. However, DOC exhibited a more complex behavior relative to a simple conservative mixing, possibly attributed to multiple origins of DOC. CDOM absorption and DOC co-varied to some degree, implying a potential way of DOC estimation from CDOM absorption. However, more detailed information such as CDOM and DOC composition and more validation data were required to obtain a stable CDOM - DOC pattern. Lastly, empirical algorithms with limited data were developed to retrieve CDOM absorption. Further validation of the algorithms were needed when they were to be commonly applied.

Dissolved organic carbon in the carbon cycle of the Indian Ocean

NASA Astrophysics Data System (ADS)

Hansell, Dennis A.

Dissolved organic carbon (DOC) is one of the least quantified and least understood bioreactive pools of carbon in the Indian Ocean. Data gaps are large, with much of the central Indian Ocean not yet sampled. Here model results depict the surface distribution of DOC, which is interpreted in terms of anticipated net DOC production (13-26 Tmol C a-1), advective transport, and export to the subsurface with overturning circulation. These interpretations are tested against DOC measurements made on sections in the Arabian Sea, across the Agulhas Current, in the central Indian Ocean, and into the Bay of Bengal. The seasonality of net DOC production and consumption is evaluated in the Arabian Sea, where data density is relatively rich. DOC stocks in the upper 150 m of the western Arabian Sea increased by >1.5 mol C m-2 during the NE monsoon and disappeared rapidly during the SW monsoon. Rapid DOC removal may result in part from aggregation of dust and biogenic particles along with stripping of trace metals and DOC, perhaps as transparent exopolymer particles, from the surrounding waters.

Hyperactive external awareness against hypoactive internal awareness in disorders of consciousness using resting-state functional MRI: highlighting the involvement of visuo-motor modulation.

PubMed

He, Jiang-Hong; Yang, Yi; Zhang, Yi; Qiu, Si-You; Zhou, Zhen-Yu; Dang, Yuan-Yuan; Dai, Yi-Wu; Liu, Yi-Jun; Xu, Ru-Xiang

2014-08-01

Resting-state functional MRI (fMRI) has emerged as a valuable tool to characterize the complex states encompassing disorders of consciousness (DOC). Awareness appears to comprise two coexistent, anticorrelated components named the external and internal awareness networks. The present study hypothesizes that DOC interrupts the balance between the internal and external awareness networks. To gain more understanding of this phenomenon, the present study analyzed resting-state fMRI data from 12 patients with DOC versus 12 healthy age-matched controls. The data were explored using independent component analysis and amplitude of low-frequency fluctuation (ALFF) analysis. The results indicated that DOC deactivated midline areas associated with internal awareness. In addition, external awareness was strengthened in DOC because of increased activation in the insula, lingual gyrus, paracentral and supplementary motor area. The activity patterns suggested strengthened external awareness against weakened internal awareness in DOC. In particular, increased activity found in the insula, lingual gyrus, paracentral and supplementary motor area of patients with DOC implied possible involvement of augmented visuo-motor modulation in these patients. DOC is probably related to hyperactive external awareness opposing hypoactive internal awareness. This unique pattern of brain activity may potentially be a prognostic marker for DOC. Copyright © 2014 John Wiley & Sons, Ltd.

Dissolved oxygen as an indicator of bioavailable dissolved organic carbon in groundwater

USGS Publications Warehouse

Chapelle, Francis H.; Bradley, Paul M.; McMahon, Peter B.; Kaiser, Karl; Benner, Ron

2012-01-01

Concentrations of dissolved oxygen (DO) plotted vs. dissolved organic carbon (DOC) in groundwater samples taken from a coastal plain aquifer of South Carolina (SC) showed a statistically significant hyperbolic relationship. In contrast, DO-DOC plots of groundwater samples taken from the eastern San Joaquin Valley of California (CA) showed a random scatter. It was hypothesized that differences in the bioavailability of naturally occurring DOC might contribute to these observations. This hypothesis was examined by comparing nine different biochemical indicators of DOC bioavailability in groundwater sampled from these two systems. Concentrations of DOC, total hydrolysable neutral sugars (THNS), total hydrolysable amino acids (THAA), mole% glycine of THAA, initial bacterial cell counts, bacterial growth rates, and carbon dioxide production/consumption were greater in SC samples relative to CA samples. In contrast, the mole% glucose of THNS and the aromaticity (SUVA254) of DOC was greater in CA samples. Each of these indicator parameters were observed to change with depth in the SC system in a manner consistent with active biodegradation. These results are uniformly consistent with the hypothesis that the bioavailability of DOC is greater in SC relative to CA groundwater samples. This, in turn, suggests that the presence/absence of a hyperbolic DO-DOC relationship may be a qualitative indicator of relative DOC bioavailability in groundwater systems.

The diabetes online community: Older adults supporting self-care through peer health.

PubMed

Litchman, Michelle L; Rothwell, Erin; Edelman, Linda S

2018-03-01

The use of the diabetes online community (DOC) is growing across all age groups. The aim of this exploratory study was to describe why older adults participated in the DOC, and how DOC users interacted with their healthcare providers. Telephone interviews (N=20) were conducted with older adult DOC users (born between 1946 and 1964) living in the United States. Interviews were analyzed using qualitative content analysis adhering to rigor and reproducibility standards. Themes that emerged from the data related to DOC participation included: information to improve self-care, emotional support, belonging to a community, validation of information, cause for concern and interaction with healthcare providers. Participants used the DOC for day to day diabetes management advice and healthcare providers for medical information and care. Participants highly valued the DOC and regarded their participation as a way to increase knowledge to improve self-care and reciprocate emotional support with others for diabetes management. The DOC filled gaps in knowledge and support participants were not able to get elsewhere. The DOC serves as an important source of information and support for individuals with diabetes and may be a cost-effective strategy to augment standard diabetes care. Copyright © 2017 Elsevier B.V. All rights reserved.

Temporal Variability of Stemflow Dissolved Organic Carbon (DOC) Concentrations and Quality from Morphologically Contrasting Deciduous Canopies

NASA Astrophysics Data System (ADS)

van Stan, J. T.; Levia, D. F.; Inamdar, S. P.; Mitchell, M. J.; Mage, S. M.

2010-12-01

Dissolved organic carbon (DOC) inputs from canopy-derived hydrologic fluxes play a significant role in the terrestrial carbon budgets of forested ecosystems. However, no studies known to the authors have examined the variability of both DOC concentrations and quality for stemflow across time scales, nor has any study to date evaluated the effects of canopy structure on stemflow DOC characteristics. This investigation seeks to rectify this knowledge gap by examining the variability of stemflow DOC concentrations and quality across contrasting canopy morphologies and time scales (seasonal, storm and intrastorm). Bulk and intrastorm stemflow samples from a less dense, rough-barked, more plagiophile (Liriodendron tulipifera L. (tulip poplar)) and a denser, thin-barked, more erectophile (Fagus grandifolia Ehrh. (American beech)) canopy were collected and analyzed for DOC quality using metrics derived from UV-vis spectroscopy (E2:E3 ratio, SUVA254, select spectral slope (S), and spectral slope ratios (SR)). Our results suggest that stemflow DOC concentrations and quality change as crown architectural traits enhance or diminish hydrologic retention time within the canopy. The architecture of L. tulipifera canopies likely retards the flow of intercepted water, increasing chemical exchange with bark and foliar surfaces. UV-vis metrics indicated that this increased chemical exchange, particularly with bark surfaces, generally enhanced aromatic hydrocarbon content and increased molecular weight. Because leaf presence influenced DOC quality, stemflow DOC characteristics also varied seasonally in response to canopy condition. At the inter- and intrastorm scale, stemflow DOC concentration and quality varied with meteorological and antecedent canopy conditions. Since recent studies have linked stemflow production to preferential subsurface transport of dissolved chemistries, trends in DOC speciation and fluxes described in this study may impact soil environments within wooded ecosystems.

Geochemistry and Flux of Terrigenous Dissolved Organic Matter to the Arctic Ocean

NASA Astrophysics Data System (ADS)

Spencer, R. G.; Mann, P. J.; Hernes, P. J.; Tank, S. E.; Striegl, R. G.; Dyda, R. Y.; Peterson, B. J.; McClelland, J. W.; Holmes, R. M.

2011-12-01

Rivers draining into the Arctic Ocean exhibit high concentrations of terrigenous dissolved organic carbon (DOC) and recent studies indicate that DOC export is changing due to climatic warming and alteration in permafrost condition. The fate of exported DOC in the Arctic Ocean is of key importance for understanding the regional carbon cycle and remains a point of discussion in the literature. As part of the Arctic Great Rivers Observatory (Arctic-GRO) project, samples were collected for DOC, chromophoric dissolved organic matter (CDOM) and lignin phenols from the Ob', Yenisey, Lena, Kolyma, Mackenzie and Yukon rivers in 2009 - 2010. DOC and lignin concentrations were elevated during the spring freshet and measurements related to DOC composition indicated an increasing contribution from terrestrial vascular plant sources at this time of year (e.g. lignin carbon-normalized yield, CDOM spectral slope, SUVA254, humic-like fluorescence). CDOM absorption was found to correlate strongly with both DOC (r2=0.83) and lignin concentration (r2=0.92) across the major arctic rivers. Utilizing these relationships we modeled loads for DOC and lignin export from high-resolution CDOM measurements (daily across the freshet) to derive improved flux estimates, particularly from the dynamic spring discharge maxima period when the majority of DOC and lignin export occurs. The new load estimates for DOC and lignin are higher than previous evaluations, emphasizing that if these are more representative of current arctic riverine export, terrigenous DOC is transiting through the Arctic Ocean at a faster rate than previously thought. It is apparent that higher resolution sampling of arctic rivers is exceptionally valuable with respect to deriving accurate fluxes and we highlight the potential of CDOM in this role for future studies and the applicability of in-situ CDOM sensors.

Spatial and temporal variability in the amount and source of dissolved organic carbon: Implications for ultraviolet exposure in amphibian habitats

USGS Publications Warehouse

Brooks, P.D.; O'Reilly, C. M.; Diamond, S.A.; Campbell, D.H.; Knapp, R.; Bradford, D.; Corn, P.S.; Hossack, B.; Tonnessen, K.

2005-01-01

The amount, chemical composition, and source of dissolved organic carbon (DOC), together with in situ ultraviolet (UV-B) attenuation, were measured at 1–2 week intervals throughout the summers of 1999, 2000, and 2001 at four sites in Rocky Mountain National Park (Colorado). Eight additional sites, four in Sequoia and Kings Canyon National Park/John Muir Wilderness (California) and four in Glacier National Park (Montana), were sampled during the summer of 2000. Attenuation of UV-B was significantly related to DOC concentrations over the three years in Rocky Mountain (R2 = 0.39, F = 25.71, P < 0.0001) and across all parks in 2000 (R2 = 0.44, F = 38.25, P < 0.0001). The relatively low R2 values, however, reflect significant temporal and spatial variability in the specific attenuation per unit DOC. Fluorescence analysis of the fulvic acid DOC fraction (roughly 600–2,000 Daltons) indicated that the source of DOC significantly affected the attenuation of UV-B. Sites in Sequoia–Kings Canyon were characterized by DOC derived primarily from algal sources and showed much deeper UV-B penetration, whereas sites in Glacier and Rocky Mountain contained a mix of algal and terrestrial DOC-dominated sites, with more terrestrially dominated sites characterized by greater UV-B attenuation per unit DOC. In general, site characteristics that promoted the accumulation of terrestrially derived DOC showed greater attenuation of UV-B per unit DOC; however, catchment vegetation and soil characteristics, precipitation, and local hydrology interacted to make it difficult to predict potential exposure from DOC concentrations.

The role of irrigation runoff and winter rainfall on dissolved organic carbon loads in an agricultural watershed

USGS Publications Warehouse

Oh, Neung-Hwan; Pellerin, Brian A.; Bachand, Philip A.M.; Hernes, Peter J.; Bachand, Sandra M.; Ohara, Noriaki; Kavvas, M. Levent; Bergamaschi, Brian A.; Horwath, William R.

2013-01-01

We investigated the role of land use/land cover and agriculture practices on stream dissolved organic carbon (DOC) dynamics in the Willow Slough watershed (WSW) from 2006 to 2008. The 415 km2watershed in the northern Central Valley, California is covered by 31% of native vegetation and the remaining 69% of agricultural fields (primarily alfalfa, tomatoes, and rice). Stream discharge and weekly DOC concentrations were measured at eight nested subwatersheds to estimate the DOC loads and yields (loads/area) using the USGS developed stream load estimation model, LOADEST. Stream DOC concentrations peaked at 18.9 mg L−1 during summer irrigation in the subwatershed with the highest percentage of agricultural land use, demonstrating the strong influence of agricultural activities on summer DOC dynamics. These high concentrations contributed to DOC yields increasing up to 1.29 g m−2 during the 6 month period of intensive agricultural activity. The high DOC yields from the most agricultural subwatershed during the summer irrigation period was similar throughout the study, suggesting that summer DOC loads from irrigation runoff would not change significantly in the absence of major changes in crops or irrigation practices. In contrast, annual DOC yields varied from 0.89 to 1.68 g m−2 yr−1 for the most agricultural watershed due to differences in winter precipitation. This suggests that variability in the annual DOC yields will be largely determined by the winter precipitation, which can vary significantly from year to year. Changes in precipitation patterns and intensities as well as agricultural practices have potential to considerably alter the DOC dynamics.

Impact of catchment geophysical characteristics and climate on the regional variability of dissolved organic carbon (DOC) in surface water.

PubMed

Cool, Geneviève; Lebel, Alexandre; Sadiq, Rehan; Rodriguez, Manuel J

2014-08-15

Dissolved organic carbon (DOC) is a recognized indicator of natural organic matter (NOM) in surface waters. The aim of this paper is twofold: to evaluate the impact of geophysical characteristics, climate and ecological zones on DOC concentrations in surface waters and, to develop a statistical model to estimate the regional variability of these concentrations. In this study, multilevel statistical analysis was used to achieve three specific objectives: (1) evaluate the influence of climate and geophysical characteristics on DOC concentrations in surface waters; (2) compare the influence of geophysical characteristics and ecological zones on DOC concentrations in surface waters; and (3) develop a model to estimate the most accurate DOC concentrations in surface waters. The case study involved 115 catchments from surface waters in the Province of Quebec, Canada. Results showed that mean temperatures recorded 60 days prior to sampling, total precipitation 10 days prior to sampling and percentages of wetlands, coniferous forests and mixed forests have a significant positive influence on DOC concentrations in surface waters. The catchment mean slope had a significant negative influence on DOC concentrations in surface waters. Water type (lake or river) and deciduous forest variables were not significant. The ecological zones had a significant influence on DOC concentrations. However, geophysical characteristics (wetlands, forests and slope) estimated DOC concentrations more accurately. A model describing the variability of DOC concentrations was developed and can be used, in future research, for estimating DBPs in drinking water as well evaluating the impact of climate change on the quality of surface waters and drinking water. Copyright © 2014 Elsevier B.V. All rights reserved.

Hydrologically transported dissolved organic carbon influences soil respiration in a tropical rainforest

NASA Astrophysics Data System (ADS)

Zhou, Wen-Jun; Lu, Hua-Zheng; Zhang, Yi-Ping; Sha, Li-Qing; Schaefer, Douglas Allen; Song, Qing-Hai; Deng, Yun; Deng, Xiao-Bao

2016-10-01

To better understand the effect of dissolved organic carbon (DOC) transported by hydrological processes (rainfall, throughfall, litter leachate, and surface soil water; 0-20 cm) on soil respiration in tropical rainforests, we detected the DOC flux in rainfall, throughfall, litter leachate, and surface soil water (0-20 cm), compared the seasonality of δ13CDOC in each hydrological process, and δ13C in leaves, litter, and surface soil, and analysed the throughfall, litter leachate, and surface soil water (0-20 cm) effect on soil respiration in a tropical rainforest in Xishuangbanna, south-west China. Results showed that the surface soil intercepted 94.4 ± 1.2 % of the annual litter leachate DOC flux and is a sink for DOC. The throughfall and litter leachate DOC fluxes amounted to 6.81 and 7.23 % of the net ecosystem exchange respectively, indicating that the DOC flux through hydrological processes is an important component of the carbon budget, and may be an important link between hydrological processes and soil respiration in a tropical rainforest. Even the variability in soil respiration is more dependent on the hydrologically transported water than DOC flux insignificantly, soil temperature, and soil-water content (at 0-20 cm). The difference in δ13C between the soil, soil water (at 0-20 cm), throughfall, and litter leachate indicated that DOC is transformed in the surface soil and decreased the sensitivity indices of soil respiration of DOC flux to water flux, which suggests that soil respiration is more sensitive to the DOC flux in hydrological processes, especially the soil-water DOC flux, than to soil temperature or soil moisture.

[Characteristics of dissolved organic carbon release under inundation from typical grass plants in the water-level fluctuation zone of the Three Gorges Reservoir area].

PubMed

Tan, Qiu-Xia; Zhu, Boi; Hua, Ke-Ke

2013-08-01

The water-level fluctuation zone of the Three Gorges Reservoir (TGR) exposes in spring and summer, then, green plants especially herbaceous plants grow vigorously. In the late of September, water-level fluctuation zone of TGR goes to inundation. Meanwhile, annually accumulated biomass of plant will be submerged for decaying, resulting in organism decomposition and release a large amount of dissolved organic carbon (DOC). This may lead to negative impacts on water environment of TGR. The typical herbaceous plants from water-level fluctuation zone were collected and inundated in the laboratory for dynamic measurements of DOC concentration of overlying water. According to the determination, the DOC release rates and fluxes have been calculated. Results showed that the release process of DOC variation fitted in a parabolic curve. The peak DOC concentrations emerge averagely in the 15th day of inundation, indicating that DOC released quickly with organism decay of herbaceous plant. The release process of DOC could be described by the logarithm equation. There are significant differences between the concentration of DOC (the maximum DOC concentration is 486.88 mg x L(-1) +/- 35.97 mg x L(-1) for Centaurea picris, the minimum is 4.18 mg x L(-1) +/- 1.07 mg x L(-1) for Echinochloacrus galli) and the release amount of DOC (the maximum is 50.54 mg x g(-1) for Centaurea picris, the minimum is 6.51 mg x g(-1) for Polygonum hydropiper) due to different characteristics of plants, especially, the values of C/N of herbaceous plants. The cumulative DOC release quantities during the whole inundation period were significantly correlated with plants' C/N values in linear equations.

Physiological protective action of dissolved organic carbon on ion regulation and nitrogenous waste excretion of zebrafish (Danio rerio) exposed to low pH in ion-poor water.

PubMed

Duarte, Rafael M; Wood, Chris M; Val, Adalberto L; Smith, D Scott

2018-06-11

Dissolved organic carbon (DOC) represents a heterogeneous group of naturally-occurring molecules in aquatic environments, and recent studies have evidenced that optically dark DOCs can exert some positive effects on ionoregulatory homeostasis of aquatic organisms in acidic waters. We investigated the effects of Luther Marsh DOC, a dark allochthonous DOC, on ion regulation and N-waste excretion of zebrafish acutely exposed to either neutral or low pH in ion-poor water. In the first experiment, simultaneous exposure to pH 4.0 and DOC greatly attenuated the stimulation of Na + diffusive losses (J out Na ), and prevented the blockade of Na + uptake (J in Na ) seen in zebrafish exposed to pH 4.0 alone, resulting in much smaller disturbances in Na + net losses (J net Na ). DOC also attenuated the stimulation of net Cl - losses (J net Cl ) and ammonia excretion (J net Amm ) during acidic challenge. In the second experiment, zebrafish acclimated to DOC displayed similar regulation of J in Na and J out Na , and, therefore, reduced J net Na at pH 4.0, effects which persisted even when DOC was no longer present. Protective effects of prior acclimation to DOC on J net Cl and J net Amm at pH 4.0 also occurred, but were less marked than those on Na + balance. Urea fluxes were unaffected by the experimental treatments. Overall, these effects were clearly beneficial to the ionoregulatory homeostasis of zebrafish at low pH, and were quite similar to those seen in a recent parallel study using darker DOC from the upper Rio Negro. This suggests that dark allochthonous DOCs share some chemical properties that render fish tolerant to ionoregulatory disturbances during acidic challenge.

Feasibility of the music therapy assessment tool for awareness in disorders of consciousness (MATADOC) for use with pediatric populations.

PubMed

Magee, Wendy L; Ghetti, Claire M; Moyer, Alvin

2015-01-01

Measuring responsiveness to gain accurate diagnosis in populations with disorders of consciousness (DOC) is of central concern because these patients have such complex clinical presentations. Due to the uncertainty of accuracy for both behavioral and neurophysiological measures in DOC, combined assessment approaches are recommended. A number of standardized behavioral measures can be used with adults with DOC with minor to moderate reservations relating to the measures' psychometric properties and clinical applicability. However, no measures have been standardized for use with pediatric DOC populations. When adapting adult measures for children, confounding factors include developmental considerations for language-based items included in all DOC measures. Given the lack of pediatric DOC measures, there is a pressing need for measures that are sensitive to the complex clinical presentations typical of DOC and that can accommodate the developmental levels of pediatric populations. The music therapy assessment tool for awareness in disorders of consciousness (MATADOC) is a music-based measure that has been standardized for adults with DOC. Given its emphasis on non-language based sensory stimuli, it is well-suited to pediatric populations spanning developmental stages. In a pre-pilot exploratory study, we examined the clinical utility of this measure and explored trends for test-retest and inter-rater agreement as well as its performance against external reference standards. In several cases, MATADOC items in the visual and auditory domains produced outcomes suggestive of higher level functioning when compared to outcomes provided by other DOC measures. Preliminary findings suggest that the MATADOC provides a useful protocol and measure for behavioral assessment and clinical treatment planning with pediatric DOC. Further research with a larger sample is warranted to test a version of the MATADOC that is refined to meet developmental needs of pediatric DOC populations.

Does Litter Impart A Detectable Chemical Signal on Soil DOC? DOC Fluorescence Signatures in Soils Undergoing Long-Term Litter Manipulations

NASA Astrophysics Data System (ADS)

Lajtha, K.; Strid, A.; Lee, B. S.

2015-12-01

Soil dissolved organic carbon (DOC) is a small but crucial part of the forest carbon cycle. Characterizing the relationship between organic matter inputs to soil and DOC chemistry is crucial to understanding the ultimate fate of root carbon, fallen wood and needles. Chemical differences in the DOC pool may help to explain whether fractions are sorbed to mineral surfaces and contribute to accumulation of soil organic carbon, respired as CO2, or exported. Soil solution DOC was sampled from the detrital input and removal treatment (DIRT) plots located in the H.J. Andrews Experimental Forest, OR to determine whether detrital inputs impart a detectable signal on DOC in mineral soil. Multiple types of fresh litter extracts, along with lysimeter and soil extracts from DIRT treatment plots were characterized using UV-Vis and fluorescence spectroscopy coupled with the Cory and McKnight (2005) parallel factor analysis (PARAFAC) model. Principal component analysis of 13 unique fluorophores distinguished using PARAFAC show that litter and soil extracts (needles, wood of decomposition Class 1, Class 3 and Class 5, O-horizon, and A-horizon) each have distinct fluorescence signatures. However, while litter-leached DOC chemistry varies by litter type, neither lysimeter-collected DOC or soil extracts show statistically significant differences in fluorescence signatures among treatments, even after 17 years of litter manipulations. The lack of observed differences among DIRT treatments suggests a "Soil Blender" hypothesis whereby both abiotic and biotic mechanisms effectively homogenize organic carbon constituents within the dissolved pool. The results of this work emphasize the ability of sorption and biodegradation to homogenize soil DOC and demonstrate that fluorescence can be an effective fingerprinting technique for soil DOC composition.

Partitioning of fluorotelomer alcohols to octanol and different sources of dissolved organic carbon.

PubMed

Carmosini, Nadia; Lee, Linda S

2008-09-01

Interest in the environmental fate of fluorotelomer alcohols (FTOHs) has spurred efforts to understand their equilibrium partitioning behavior. Experimentally determined partition coefficients for FTOHs between soil/water and air/water have been reported, but direct measurements of partition coefficients for dissolved organic carbon (DOC)/water (K(doc)) and octanol/ water(K(ow)) have been lacking. Here we measured the partitioning of 8:2 and 6:2 FTOH between one or more types of DOC and water using enhanced solubility or dialysis bag techniques, and also quantified K(ow) values for 4:2 to 8:2 FTOH using a batch equilibration method. The range in measured log K(doc) values for 8:2 FTOH using the enhanced solubility technique with DOC derived from two soils, two biosolids, and three reference humic acids is 2.00-3.97 with the lowest values obtained for the biosolids and an average across all other DOC sources (biosolid DOC excluded) of 3.54 +/- 0.29. For 6:2 FTOH and Aldrich humic acid, a log K(doc) value of 1.96 +/- 0.45 was measured using the dialysis technique. These average values are approximately 1 to 2 log units lower than previously indirectly estimated K(doc) values. Overall, the affinity for DOC tends to be slightly lower than that for particulate soil organic carbon. Measured log K(ow) values for 4:2 (3.30 +/- 0.04), 6:2 (4.54 +/- 0.01), and 8:2 FTOH (5.58 +/- 0.06) were in good agreement with previously reported estimates. Using relationships between experimentally measured partition coefficients and C-atom chain length, we estimated K(doc) and K(ow) values for shorter and longer chain FTOHs, respectively, that we were unable to measure experimentally.