WASP7 BENTHIC ALGAE - MODEL THEORY AND USER'S GUIDE

EPA Science Inventory

The standard WASP7 eutrophication module includes nitrogen and phosphorus cycling, dissolved oxygen-organic matter interactions, and phytoplankton kinetics. In many shallow streams and rivers, however, the attached algae (benthic algae, or periphyton, attached to submerged substr...

Oyster reef restoration in the Northern Gulf of Mexico: effect of artificial substrate and sge on nekton and benthic macroinvertebrate assemblage use

USGS Publications Warehouse

Brown, Laura A.; Furlong, Jessica N.; Brown, Kenneth M.; LaPeyre, Megan K.

2013-01-01

In the northern Gulf of Mexico (GOM), reefs built by eastern oysters, Crassostrea virginica, provide critical habitat within shallow estuaries, and recent efforts have focused on restoring reefs to benefit nekton and benthic macroinvertebrates. We compared nekton and benthic macroinvertebrate assemblages at historic, newly created (<5years) and old (>6years) shell and rock substrate reefs. Using crab traps, gill-nets, otter trawls, cast nets, and benthic macroinvertebrate collectors, 20 shallow reefs (<5m) in the northern GOM were sampled throughout the summer of 2011. We compared nekton and benthic assemblage abundance, diversity and composition across reef types. Except for benthic macroinvertebrate abundance, which was significantly higher on old rock reefs as compared to historic reefs, all reefs were similar to historic reefs, suggesting created reefs provide similar support of nekton and benthic assemblages as historic reefs. To determine refuge value of oyster structure for benthic macroinvertebrates compared to bare bottom, we tested preferences of juvenile crabs across depth and refuge complexity in the presence and absence of adult blue crabs (Callinectes sapidus). Juveniles were more likely to use deep water with predators present only when provided oyster structure. Provision of structural material to support and sustain development of benthic and mobile reef communities may be the most important factor in determining reef value to these assemblages, with biophysical characteristics related to reef location influencing assemblage patterns in areas with structure; if so, appropriately locating created reefs is critical.

Benthic Habitat Mapping by Combining Lyzenga’s Optical Model and Relative Water Depth Model in Lintea Island, Southeast Sulawesi

NASA Astrophysics Data System (ADS)

Hafizt, M.; Manessa, M. D. M.; Adi, N. S.; Prayudha, B.

2017-12-01

Benthic habitat mapping using satellite data is one challenging task for practitioners and academician as benthic objects are covered by light-attenuating water column obscuring object discrimination. One common method to reduce this water-column effect is by using depth-invariant index (DII) image. However, the application of the correction in shallow coastal areas is challenging as a dark object such as seagrass could have a very low pixel value, preventing its reliable identification and classification. This limitation can be solved by specifically applying a classification process to areas with different water depth levels. The water depth level can be extracted from satellite imagery using Relative Water Depth Index (RWDI). This study proposed a new approach to improve the mapping accuracy, particularly for benthic dark objects by combining the DII of Lyzenga’s water column correction method and the RWDI of Stumpt’s method. This research was conducted in Lintea Island which has a high variation of benthic cover using Sentinel-2A imagery. To assess the effectiveness of the proposed new approach for benthic habitat mapping two different classification procedures are implemented. The first procedure is the commonly applied method in benthic habitat mapping where DII image is used as input data to all coastal area for image classification process regardless of depth variation. The second procedure is the proposed new approach where its initial step begins with the separation of the study area into shallow and deep waters using the RWDI image. Shallow area was then classified using the sunglint-corrected image as input data and the deep area was classified using DII image as input data. The final classification maps of those two areas were merged as a single benthic habitat map. A confusion matrix was then applied to evaluate the mapping accuracy of the final map. The result shows that the new proposed mapping approach can be used to map all benthic objects in all depth ranges and shows a better accuracy compared to that of classification map produced using only with DII.

Benthic Food Webs of the Chukchi and Beaufort Seas: Relative Importance of Ultimate Carbon Sources in a Changing Climate

NASA Astrophysics Data System (ADS)

Dunton, K. H.; Schonberg, S. V.; Mctigue, N.; Bucolo, P. A.; Connelly, T. L.; McClelland, J. W.

2014-12-01

Changes in sea-ice cover, coastal erosion, and freshwater run-off have the potential to greatly influence carbon assimilation pathways and affect trophic structure in benthic communities across the western Arctic. In the Chukchi Sea, variations in the duration and timing of ice cover affect the delivery of ice algae to a relatively shallow (40-50 m) shelf benthos. Although ice algae are known as an important spring carbon subsidy for marine benthic fauna, ice algal contributions may also help initiate productivity of an active microphytobenthos. Recent studies provide clear evidence that the microphytobenthos are photosynthetically active, and have sufficient light and nutrients for in situ growth. The assimilation of benthic diatoms from both sources may explain the 13C enrichment observed in benthic primary consumers throughout the northern Chukchi. On the eastern Beaufort Sea coast, shallow (2-4 m) estuarine lagoon systems receive massive subsidies of terrestrial carbon that is assimilated by a benthic fauna of significant importance to upper trophic level species, but again, distinct 13C enrichment in benthic primary consumers suggests the existence of an uncharacterized food source. Since ice algae are absent, we believe the 13C enrichment in benthic fauna is caused by the assimilation of benthic microalgae, as reflected in seasonally high benthic chlorophyll in spring under replete light and nutrient conditions. Our observations suggest that changes in ice cover, on both temporal and spatial scales, are likely to have significant effects on the magnitude and timing of organic matter delivery to both shelf and nearshore systems, and that locally produced organic matter may become an increasingly important carbon subsidy that affects trophic assimilation and secondary ecosystem productivity.

Photosynthesis as a Possible Source of Gas Bubbles in Shallow Sandy Coastal Sediments

DTIC Science & Technology

2011-09-30

bubbles can be formed when photosynthesis by benthic microalgae causes pore water to become supersaturated with oxygen. OBJECTIVES The next...reflectivity. We also collected sediment samples from the upper few mm of sand to identify the dominant taxa of benthic microalgae present. After...Graduate School of Oceanography / University of Rhode Island (GSO/URI) to identify the benthic microalgae in the samples. Following the untimely death of

Paleolimnological records of nitrogen deposition in shallow, high-elevation lakes of Grand Teton National Park, Wyoming, USA

USGS Publications Warehouse

Spaulding, Sarah A.; Otu, Megan K.; Wolfe, Alexander P.; Baron, Jill S.

2015-01-01

Reactive nitrogen (Nr) from anthropogenic sources has been altering ecosystem function in lakes of the Rocky Mountains, other regions of western North America, and the Arctic over recent decades. The response of biota in shallow lakes to atmospheric deposition of Nr, however, has not been considered. Benthic algae are dominant in shallow, high-elevation lakes and are less sensitive to nutrient inputs than planktonic algae. Because the benthos is typically more nutrient rich than the water column, shallow lakes are not expected to show evidence of anthropogenic Nr. In this study, we assessed sedimentary evidence for regional Nr deposition, sediment chronology, and the nature of algal community response in five shallow, high-elevation lakes in Grand Teton National Park (GRTE). Over 140 diatom taxa were identified from the sediments, with a relatively high species richness of taxa characteristic of oligotrophic conditions. The diatom assemblages were dominated by benthic taxa, especially motile taxa. The GRTE lakes demonstrate assemblage-wide shifts in diatoms, including 1) synchronous and significant assemblage changes centered on ~1960 AD; 2) pre-1960 assemblages differed significantly from post-1960 assemblages; 3) pre-1960 diatom assemblages fluctuated randomly, whereas post- 1960 assemblages showed directional change; 4) changes in δ15N signatures were correlated with diatom community composition. These results demonstrate recent changes in shallow high18 elevation lakes that are most correlated with anthropogenic Nr. It is also possible, however, that the combined effect of Nr deposition and warming is accelerating species shifts in benthic diatoms. While uncertainties remain about the potential synergy of Nr deposition and warming, this study adds shallow lakes to the growing list of impacted high-elevation localities in western North America.

BENTHIC PRODUCTION AS THE BASE FOR FOOD WEBS IN ALASKAN ARCTIC LAKES

EPA Science Inventory

Plankton are traditionally viewed as the basis for limnetic food webs, with zooplankton acting as an energy gateway between phytoplanktonic primary producers and fish. Often, benthic production is considered to be important primarily to the benthos and in shallow systems, such as...

The role of dispersal mode and habitat specialization for metacommunity structure of shallow beach invertebrates.

PubMed

Rodil, Iván F; Lucena-Moya, Paloma; Jokinen, Henri; Ollus, Victoria; Wennhage, Håkan; Villnäs, Anna; Norkko, Alf

2017-01-01

Metacommunity ecology recognizes the interplay between local and regional patterns in contributing to spatial variation in community structure. In aquatic systems, the relative importance of such patterns depends mainly on the potential connectivity of the specific system. Thus, connectivity is expected to increase in relation to the degree of water movement, and to depend on the specific traits of the study organism. We examined the role of environmental and spatial factors in structuring benthic communities from a highly connected shallow beach network using a metacommunity approach. Both factors contributed to a varying degree to the structure of the local communities suggesting that environmental filters and dispersal-related mechanisms played key roles in determining abundance patterns. We categorized benthic taxa according to their dispersal mode (passive vs. active) and habitat specialization (generalist vs. specialist) to understand the relative importance of environment and dispersal related processes for shallow beach metacommunities. Passive dispersers were predicted by a combination of environmental and spatial factors, whereas active dispersers were not spatially structured and responded only to local environmental factors. Generalists were predicted primarily by spatial factors, while specialists were only predicted by local environmental factors. The results suggest that the role of the spatial component in metacommunity organization is greater in open coastal waters, such as shallow beaches, compared to less-connected environmentally controlled aquatic systems. Our results also reveal a strong environmental role in structuring the benthic metacommunity of shallow beaches. Specifically, we highlight the sensitivity of shallow beach macrofauna to environmental factors related to eutrophication proxies.

The role of dispersal mode and habitat specialization for metacommunity structure of shallow beach invertebrates

PubMed Central

Lucena-Moya, Paloma; Jokinen, Henri; Ollus, Victoria; Wennhage, Håkan; Villnäs, Anna; Norkko, Alf

2017-01-01

Metacommunity ecology recognizes the interplay between local and regional patterns in contributing to spatial variation in community structure. In aquatic systems, the relative importance of such patterns depends mainly on the potential connectivity of the specific system. Thus, connectivity is expected to increase in relation to the degree of water movement, and to depend on the specific traits of the study organism. We examined the role of environmental and spatial factors in structuring benthic communities from a highly connected shallow beach network using a metacommunity approach. Both factors contributed to a varying degree to the structure of the local communities suggesting that environmental filters and dispersal-related mechanisms played key roles in determining abundance patterns. We categorized benthic taxa according to their dispersal mode (passive vs. active) and habitat specialization (generalist vs. specialist) to understand the relative importance of environment and dispersal related processes for shallow beach metacommunities. Passive dispersers were predicted by a combination of environmental and spatial factors, whereas active dispersers were not spatially structured and responded only to local environmental factors. Generalists were predicted primarily by spatial factors, while specialists were only predicted by local environmental factors. The results suggest that the role of the spatial component in metacommunity organization is greater in open coastal waters, such as shallow beaches, compared to less-connected environmentally controlled aquatic systems. Our results also reveal a strong environmental role in structuring the benthic metacommunity of shallow beaches. Specifically, we highlight the sensitivity of shallow beach macrofauna to environmental factors related to eutrophication proxies. PMID:28196112

Benthic habitat and fish assemblage structure from shallow to mesophotic depths in a storm-impacted marine protected area

NASA Astrophysics Data System (ADS)

Abesamis, Rene A.; Langlois, Tim; Birt, Matthew; Thillainath, Emma; Bucol, Abner A.; Arceo, Hazel O.; Russ, Garry R.

2018-03-01

Baseline ecological studies of mesophotic coral ecosystems are lacking in the equatorial Indo-West Pacific region where coral reefs are highly threatened by anthropogenic and climate-induced disturbances. Here, we used baited remote underwater video to describe benthic habitat and fish assemblage structure from 10 to 80 m depth at Apo Island, a well-managed marine protected area in the Philippines. We conducted surveys 2 yr after two storms (in 2011 and 2012) caused severe damage to shallow coral communities within the no-take marine reserve (NTMR) of Apo Island, which led to declines in fish populations that had built up over three decades. We found that hard coral cover was restricted to < 40 m deep in the storm-impacted NTMR and a nearby fished area not impacted by storms. Benthic cover at mesophotic depths (> 30 m) was dominated by sand/rubble and rock (dead coral) with low cover of soft corals, sponges and macroalgae. Storm damage appeared to have reached the deepest limit of the fringing reef (40 m) and reduced variability in benthic structure within the NTMR. Species richness and/or abundance of most trophic groups of fish declined with increasing depth regardless of storm damage. There were differences in taxonomic and trophic structure and degree of targeting by fisheries between shallow and mesophotic fish assemblages. Threatened shark species and a fish species previously unreported in the Philippines were recorded at mesophotic depths. Our findings provide a first glimpse of the benthic and fish assemblage structure of Philippine coral reef ecosystems across a wide depth gradient. This work also underscores how a combination of limited coral reef development at mesophotic depths close to shallow reefs and severe habitat loss caused by storms would result in minimal depth refuge for reef fish populations.

Carbon cycling in a high-arctic marine ecosystem - Young Sound, NE Greenland

NASA Astrophysics Data System (ADS)

Rysgaard, Søren; Nielsen, Torkel Gissel

2006-10-01

Young Sound is a deep-sill fjord in NE Greenland (74°N). Sea ice usually begins to form in late September and gains a thickness of ∼1.5 m topped with 0-40 cm of snow before breaking up in mid-July the following year. Primary production starts in spring when sea ice algae begin to flourish at the ice-water interface. Most biomass accumulation occurs in the lower parts of the sea ice, but sea ice algae are observed throughout the sea ice matrix. However, sea ice algal primary production in the fjord is low and often contributes only a few percent of the annual phytoplankton production. Following the break-up of ice, the immediate increase in light penetration to the water column causes a steep increase in pelagic primary production. Usually, the bloom lasts until August-September when nutrients begin to limit production in surface waters and sea ice starts to form. The grazer community, dominated by copepods, soon takes advantage of the increased phytoplankton production, and on an annual basis their carbon demand (7-11 g C m -2) is similar to phytoplankton production (6-10 g C m -2). Furthermore, the carbon demand of pelagic bacteria amounts to 7-12 g C m -2 yr -1. Thus, the carbon demand of the heterotrophic plankton is approximately twice the estimated pelagic primary production, illustrating the importance of advected carbon from the Greenland Sea and from land in fuelling the ecosystem. In the shallow parts of the fjord (<40 m) benthic primary producers dominate primary production. As a minimum estimate, a total of 41 g C m -2 yr -1 is fixed by primary production, of which phytoplankton contributes 15%, sea ice algae <1%, benthic macrophytes 62% and benthic microphytes 22%. A high and diverse benthic infauna dominated by polychaetes and bivalves exists in these shallow-water sediments (<40 m), which are colonized by benthic primary producers and in direct contact with the pelagic phytoplankton bloom. The annual benthic mineralization is 32 g C m -2 yr -1 of which megafauna accounts for 17%. In deeper waters benthic mineralization is 40% lower than in shallow waters and megafauna, primarily brittle stars, accounts for 27% of the benthic mineralization. The carbon that escapes degradation is permanently accumulated in the sediment, and for the locality investigated a rate of 7 g C m -2 yr -1 was determined. A group of walruses (up to 50 adult males) feed in the area in shallow waters (<40 m) during the short, productive, ice-free period, and they have been shown to be able to consume <3% of the standing stock of bivalves ( Hiatella arctica, Mya truncata and Serripes Groenlandicus), or half of the annual bivalve somatic production. Feeding at greater depths is negligible in comparison with their feeding in the bivalve-rich shallow waters.

Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

NASA Astrophysics Data System (ADS)

Stief, P.

2013-12-01

Invertebrate animals that live at the bottom of aquatic ecosystems (i.e., benthic macrofauna) are important mediators between nutrients in the water column and microbes in the benthos. The presence of benthic macrofauna stimulates microbial nutrient dynamics through different types of animal-microbe interactions, which potentially affect the trophic status of aquatic ecosystems. This review contrasts three types of animal-microbe interactions in the benthos of aquatic ecosystems: (i) ecosystem engineering, (ii) grazing, and (iii) symbiosis. Their specific contributions to the turnover of fixed nitrogen (mainly nitrate and ammonium) and the emission of the greenhouse gas nitrous oxide are evaluated. Published data indicate that ecosystem engineering by sediment-burrowing macrofauna stimulates benthic nitrification and denitrification, which together allows fixed nitrogen removal. However, the release of ammonium from sediments is enhanced more strongly than the sedimentary uptake of nitrate. Ecosystem engineering by reef-building macrofauna increases nitrogen retention and ammonium concentrations in shallow aquatic ecosystems, but allows organic nitrogen removal through harvesting. Grazing by macrofauna on benthic microbes apparently has small or neutral effects on nitrogen cycling. Animal-microbe symbioses provide abundant and distinct benthic compartments for a multitude of nitrogen-cycle pathways. Recent studies reveal that ecosystem engineering, grazing, and symbioses of benthic macrofauna significantly enhance nitrous oxide emission from shallow aquatic ecosystems. The beneficial effect of benthic macrofauna on fixed nitrogen removal through coupled nitrification-denitrification can thus be offset by the concurrent release of (i) ammonium that stimulates aquatic primary production and (ii) nitrous oxide that contributes to global warming. Overall, benthic macrofauna intensifies the coupling between benthos, pelagial, and atmosphere through enhanced turnover and transport of nitrogen.

Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

NASA Astrophysics Data System (ADS)

Stief, P.

2013-07-01

Invertebrate animals that live at the bottom of aquatic ecosystems (i.e., benthic macrofauna) are important mediators between nutrients in the water column and microbes in the benthos. The presence of benthic macrofauna stimulates microbial nutrient dynamics through different types of animal-microbe interactions, which potentially affect the trophic status of aquatic ecosystems. This review contrasts three types of animal-microbe interactions in the benthos of aquatic ecosystems: (i) ecosystem engineering, (ii) grazing, and (iii) symbiosis. Their specific contributions to the turnover of fixed nitrogen (mainly nitrate and ammonium) and the emission of the greenhouse gas nitrous oxide are evaluated. Published data indicate that ecosystem engineering by sediment-burrowing macrofauna stimulates benthic nitrification and denitrification, which together allows fixed nitrogen removal. However, the release of ammonium from sediments often is enhanced even more than the sedimentary uptake of nitrate. Ecosystem engineering by reef-building macrofauna increases nitrogen retention and ammonium concentrations in shallow aquatic ecosystems, but allows organic nitrogen removal through harvesting. Grazing by macrofauna on benthic microbes apparently has small or neutral effects on nitrogen cycling. Animal-microbe symbioses provide abundant and distinct benthic compartments for a multitude of nitrogen-cycle pathways. Recent studies revealed that ecosystem engineering, grazing, and symbioses of benthic macrofauna significantly enhance nitrous oxide emission from shallow aquatic ecosystems. The beneficial effect of benthic macrofauna on fixed nitrogen removal through coupled nitrification-denitrification can thus be offset by the concurrent release of (i) ammonium that stimulates aquatic primary production and (ii) nitrous oxide that contributes to global warming. Overall, benthic macrofauna intensifies the coupling between benthos, pelagial, and atmosphere through enhanced turnover and transport of nitrogen.

Are mesophotic coral ecosystems distinct communities and can they serve as refugia for shallow reefs?

NASA Astrophysics Data System (ADS)

Semmler, Robert F.; Hoot, Whitney C.; Reaka, Marjorie L.

2017-06-01

We analyzed an extensive dataset of over 9000 benthic and suprabenthic species found throughout the Gulf of Mexico (GoMx) to assess whether mesophotic coral ecosystems represent distinct assemblages and evaluate their potential to serve as refugia for shallow reef communities. We assessed community structure of the overall benthic community from 0 to 300 m via non-metric multidimensional scaling (NMDS) of species presence across depth bands. We used the Jaccard index of similarity to calculate the proportion of shared species between adjacent depth bands, measure species turnover with depth, and assess taxonomic overlap between shallow reefs versus progressively deeper depth bands. NMDS ordinations showed that the traditionally defined mesophotic range (30-150 m) as a whole is not a distinct community. In contrast, taxonomically distinct communities, determined by hierarchical clustering, were found at 0-70, 60-120, 110-200, and 190-300 m. Clustering highlighted an important separation in the benthic community at 60 m, which was especially important for actinopterygian fishes. Species turnover between adjacent depths decreased with depth for all taxa combined and individual taxa, with peaks at 60, 90-120, and 190-200 m. Fishes showed lower turnover from shallow to upper mesophotic depths (0-50 m) than all taxa combined, a substantial peak at 60 m, followed by a precipitous and continued decline in turnover thereafter. Taxonomic overlap between shallow (0-20 m) and progressively deeper zones declined steadily with depth in all taxa and individual taxa, suggesting that mid- and lower mesophotic habitats have less (but not inconsequential) potential to serve as refugia (60-150 m, 15-25% overlap with shallow habitats) than upper mesophotic zones (30-60 m, 30-45% overlap with shallow habitats) for all taxa combined. We conclude that the traditional mesophotic zone is home to three ecological communities in the GoMx, one that is confluent with shallow reefs, a distinct mesophotic assemblage spanning 60-120 m, and a third that extends onto the outer continental shelf.

The functional significance of the spinose keel structure of benthic foraminifera: inferences from Miliolina cristata Millett, 1898 (Miliolida) from northeast Romania

NASA Astrophysics Data System (ADS)

Dumitriţa Dumitriu, Simina; Dubicka, Zofia; Ionesi, Viorel

2018-01-01

The paper presents Miocene (lower Sarmatian) benthic foraminifera from the FH3P1 Rădăuţi Core section from the northwestern part of the Moldavian Platform, Romania. Based on foraminiferal assemblages we infer sediments were deposited in shallow-water, including marine-marginal environments, of varying salinities from brackish to normal marine with some short and rather small sea-level changes. Moreover, we describe for the first time in the Moldavian Platform a very rare species, Miliolina cristata Millett, which presents a characteristic spinose keel. Based on a detailed study of the test morphology and its variability, observed in picked material as well as in thin sections, we discuss some palaeoecological aspects of these foraminifera. M. cristata probably does not constitute a distinctive species, but it is more probable that some miliolid taxa developed such an exoskeletal feature in response to new environmental conditions, such as more turbulent water. Accordingly, our study would support the thesis that one of the functions of the benthic foraminiferal spines is to stabilize foraminiferal tests found in sandy substrates from high-energy environments.

Preliminary results from a shallow water benthic grazing study

USGS Publications Warehouse

Jones, N.L.; Monismith, Stephen G.; Thompson, Janet K.

2005-01-01

Despite great improvements in our knowledge on the effects of benthic grazers on seston concentrations in water columns, the effects of different hydrodynamic conditions on grazing rates has not been formulated. This makes it difficult to assess the system-wide effect of the benthic ecosystem on phytoplankton concentrations. Furthermore, it affects our ability to predict the potential success of a benthic species, such as the invasive clams Corbicula fluminea and Potamocorbula amurensis. This paper presents the preliminary results of a control volume approach to elucidate the effect of different hydrodynamic conditions on the grazing rates of Corbicula fluminea.

An Ecological Tipping Point Defined by Shallow Marine Foraminifera in the latest Paleocene

NASA Astrophysics Data System (ADS)

Robinson, M. M.; Spivey, W.

2016-12-01

The Paleocene-Eocene Thermal Maximum (PETM) is recognized in marine sediments by a carbonate dissolution zone, the extinction or turnover of benthic taxa, and a radiation of planktic excursion taxa, all accompanied by a rapid-onset, negative carbon isotope excursion (CIE). We present foraminiferal evidence from shallow marine sediments in southeastern Maryland, USA, where accumulation rates are high, for a minor ocean acidification event in the latest Paleocene that coincides with a relatively small (-2‰) CIE. This pre-onset excursion (POE) precedes the larger (-4‰) PETM CIE onset and dissolution event. During the POE, the benthic assemblage is reconfigured toward agglutinated species in order to adapt to increased acidity, and the planktic assemblage begins to speciate due to perturbed mixed layer conditions. The benthic assemblage returns to normal, without interruption, as the POE recovers, but planktic excursion taxa continue to appear in very low numbers. This is contrasted to the major ocean acidification event associated with the PETM CIE onset that results in a zone of complete dissolution followed by distinctive benthic and planktic foraminiferal assemblages. Our microfossil evidence documents a biotic response to bottom water and mixed layer perturbations that illustrates how coastal ecosystems react to both moderate and severe ocean acidification events, bracketing the ecological tipping point of shallow marine ecosystems. The POE, roughly half the magnitude of the CIE onset, provides insight into the nature of the initial effects of climate perturbation as well as an example of one that is fully recoverable. It is here that research aimed to better understand the long-term effects and reversibility of modern deteriorating oceanic conditions should focus. This study provides an initial metric by which to measure modern ecosystem disturbances and will help to define the tipping point for the shallow marine environment.

Recovery of Carbonate Ecosystems Following the End-Triassic Mass Extinction: Insights from Mercury Anomalies and Their Relationship to the Central Atlantic Magmatic Province

NASA Astrophysics Data System (ADS)

Corsetti, F. A.; Thibodeau, A. M.; Ritterbush, K. A.; West, A. J.; Yager, J. A.; Ibarra, Y.; Bottjer, D. J.; Berelson, W.; Bergquist, B. A.

2015-12-01

Recent high-resolution age dating demonstrates that the end-Triassic mass extinction overlapped with the eruption of the Central Atlantic Magmatic Province (CAMP), and the release of CO2 and other volatiles to the atmosphere has been implicated in the extinction. Given the potentially massive release of CO2, ocean acidification is commonly considered a factor in the extinction and the collapse of shallow marine carbonate ecosystems. However, the timing of global marine biotic recovery versus the CAMP eruptions is more uncertain. Here, we use Hg concentrations and Hg/TOC ratios as indicators of CAMP volcanism in continental shelf sediments, the primary archive of faunal data. In Triassic-Jurassic strata, Muller Canyon, Nevada, Hg and Hg/TOC levels are low prior to the extinction, rise sharply in the extinction interval, peak just prior to the appearance of the first Jurassic ammonite, and remain above background in association with a depauperate (low diversity) earliest Jurassic fauna. The return of Hg to pre-extinction levels is associated with a significant pelagic and benthic faunal recovery. We conclude that significant biotic recovery did not begin until CAMP eruptions ceased. Furthermore, the initial benthic recovery in the Muller Canyon section involves the expansion of a siliceous sponge-dominated ecosystem across shallow marine environments, a feature now known from other sections around the world (e.g., Peru, Morocco, Austria, etc.). Carbonate dominated benthic ecosystems (heralded by the return of abundant corals and other skeletal carbonates) did not recover for ~1 million years following the last eruption of CAMP, longer than the typical duration considered for ocean acidification events, implying other factors may have played a role in carbonate ecosystem dynamics after the extinction.

Shallow water benthic imaging and substrate characterization using recreational-grade sidescan-sonar

USGS Publications Warehouse

Buscombe, Daniel D.

2017-01-01

In recent years, lightweight, inexpensive, vessel-mounted ‘recreational grade’ sonar systems have rapidly grown in popularity among aquatic scientists, for swath imaging of benthic substrates. To promote an ongoing ‘democratization’ of acoustical imaging of shallow water environments, methods to carry out geometric and radiometric correction and georectification of sonar echograms are presented, based on simplified models for sonar-target geometry and acoustic backscattering and attenuation in shallow water. Procedures are described for automated removal of the acoustic shadows, identification of bed-water interface for situations when the water is too turbid or turbulent for reliable depth echosounding, and for automated bed substrate classification based on singlebeam full-waveform analysis. These methods are encoded in an open-source and freely-available software package, which should further facilitate use of recreational-grade sidescan sonar, in a fully automated and objective manner. The sequential correction, mapping, and analysis steps are demonstrated using a data set from a shallow freshwater environment.

Diversity and Distribution of Prokaryotes within a Shallow-Water Pockmark Field.

PubMed

Giovannelli, Donato; d'Errico, Giuseppe; Fiorentino, Federica; Fattorini, Daniele; Regoli, Francesco; Angeletti, Lorenzo; Bakran-Petricioli, Tatjana; Vetriani, Costantino; Yücel, Mustafa; Taviani, Marco; Manini, Elena

2016-01-01

Pockmarks are crater-like depression on the seafloor associated with hydrocarbon ascent through muddy sediments in continental shelves around the world. In this study, we examine the diversity and distribution of benthic microbial communities at shallow-water pockmarks adjacent to the Middle Adriatic Ridge. We integrate microbial diversity data with characterization of local hydrocarbons concentrations and sediment geochemistry. Our results suggest these pockmarks are enriched in sedimentary hydrocarbons, and host a microbial community dominated by Bacteria, even in deeper sediment layers. Pockmark sediments showed higher prokaryotic abundance and biomass than surrounding sediments, potentially due to the increased availability of organic matter and higher concentrations of hydrocarbons linked to pockmark activity. Prokaryotic diversity analyses showed that the microbial communities of these shallow-water pockmarks are unique, and comprised phylotypes associated with the cycling of sulfur and nitrate compounds, as well as numerous know hydrocarbon degraders. Altogether, this study suggests that shallow-water pockmark habitats enhance the diversity of the benthic prokaryotic biosphere by providing specialized environmental niches.

Quantifying benthic nitrogen fluxes in Puget Sound, Washington: a review of available data

USGS Publications Warehouse

Sheibley, Richard W.; Paulson, Anthony J.

2014-01-01

Understanding benthic fluxes is important for understanding the fate of materials that settle to the Puget Sound, Washington, seafloor, as well as the impact these fluxes have on the chemical composition and biogeochemical cycles of marine waters. Existing approaches used to measure benthic nitrogen flux in Puget Sound and elsewhere were reviewed and summarized, and factors for considering each approach were evaluated. Factors for selecting an appropriate approach for gathering information about benthic flux include: availability of resources, objectives of projects, and determination of which processes each approach measures. An extensive search of literature was undertaken to summarize known benthic nitrogen fluxes in Puget Sound. A total of 138 individual flux chamber measurements and 38 sets of diffusive fluxes were compiled for this study. Of the diffusive fluxes, 35 new datasets were located, and new flux calculations are presented in this report. About 65 new diffusive flux calculations are provided across all nitrogen species (nitrate, NO3-; nitrite, NO2-; ammonium, NH4+). Data analysis of this newly compiled benthic flux dataset showed that fluxes beneath deep (greater than 50 meters) water tended to be lower than those beneath shallow (less than 50 meters) water. Additionally, variability in flux at the shallow depths was greater, possibly indicating a more dynamic interaction between the benthic and pelagic environments. The overall range of bottom temperatures from studies in the Puget Sound area were small (5–16 degrees Celsius), and only NH4+ flux showed any pattern with temperature. For NH4+, flux values and variability increased at greater than about 12 degrees Celsius. Collection of additional study site metadata about environmental factors (bottom temperature, depth, sediment porosity, sediment type, and sediment organic matter) will help with development of a broader regional understanding benthic nitrogen flux in the Puget Sound.

A new 0.9 Ma oxygen isotope stratigraphy for a shallow-water sedimentary transect across three IODP 317 sites in the Canterbury Bight of southwest Pacific Ocean

NASA Astrophysics Data System (ADS)

Ding, Xuan; Wu, YingYing

2016-04-01

Sedimentary records in shallow-water environment provide unique opportunity to further our understanding on the regional relative sea level changes in relation to global climate change. Here we present a new 0.9 Ma oxygen isotope stratigraphy for a shallow-water sedimentary transect across three IODP 317 sites in the Canterbury Bight of southwest Pacific Ocean. The three sites are located on the eastern margin of the South Island of New Zealand, including a continental slope site, IODP317-U1352 and two continental shelf sites, IODP317-U1354 and IODP317-U1351. We first generated high resolution benthic foraminifers (Nonionella flemingi) δ18O records for the three sites and a planktonic (Globigerina bulloides) record for the U1352B. An initial chronological framework for the benthic δ18O record of the U1352B was constructed using 8 accelerator mass spectrometry (AMS) radiocarbon dates and 4 biostratigraphic events. Then a refined age model was established by correlating the U1352B benthic δ18O record with the EDC δD record on the AICC2012 time-scale, and the LR04 benthic δ18O stack. Although the U1354B and U1351B have lower sedimentation rates, their benthic δ18O records correlate well with that of U1352B. In order to ensure the accuracy of the chronostratigraphic framework established, we also analyzed the characteristics of sedimentary grain size and the planktonic and benthic δ18O values. In accord with the adjacent sites, the results show that the melt of Southern Alps glaciers due to the warming climate during MIS 11 and 5.5 led to the increased fresh water delivery, with massive terrigenous deposit; and the warm SST during the MIS7 is related with the STF migration, which led to strong current activity, with coarser grain size. Meanwhile, records of benthic δ18O, sedimentation rate and content of >63μm coarse fraction of site U1352 all indicate the MIS 20 was indeed a colder interval compared to subsequent glacial times.

Changes in benthic ecosystems and ocean circulation in the Southeast Atlantic across Eocene Thermal Maximum 2

NASA Astrophysics Data System (ADS)

Jennions, S. M.; Thomas, E.; Schmidt, D. N.; Lunt, D.; Ridgwell, A.

2015-08-01

Eocene Thermal Maximum 2 (ETM2) occurred 1.8 Myr after the Paleocene-Eocene Thermal Maximum (PETM) and, like the PETM, was characterized by a negative carbon isotope excursion and warming. We combined benthic foraminiferal and sedimentological records for Southeast Atlantic Sites 1263 (1500 m paleodepth) and 1262 (3600 m paleodepth) to show that benthic foraminiferal diversity and accumulation rates declined more precipitously and severely at the shallower site during peak ETM2. As the sites are in close proximity, differences in surface productivity cannot have caused this differential effect. Instead, we infer that changes in ocean circulation across ETM2 may have produced more pronounced warming at intermediate depths (Site 1263). The effects of warming include increased metabolic rates, a decrease in effective food supply and increased deoxygenation, thus potentially explaining the more severe benthic impacts at Site 1263. In response, bioturbation may have decreased more at Site 1263 than at Site 1262, differentially affecting bulk carbonate records. We use a sediment-enabled Earth system model to test whether a reduction in bioturbation and/or the likely reduced carbonate saturation of more poorly ventilated waters can explain the more extreme excursion in bulk δ13C and sharper transition in wt % CaCO3 at Site 1263. We find that both enhanced acidification and reduced bioturbation during the ETM2 peak are needed to account for the observed features. Our combined ecological and modeling analysis illustrates the potential role of ocean circulation changes in amplifying local environmental changes and driving temporary, but drastic, loss of benthic biodiversity and abundance.

The Roles of Sea-Ice, Light and Sedimentation in Structuring Shallow Antarctic Benthic Communities

PubMed Central

Clark, Graeme F.; Stark, Jonathan S.; Palmer, Anne S.; Riddle, Martin J.; Johnston, Emma L.

2017-01-01

On polar coasts, seasonal sea-ice duration strongly influences shallow marine environments by affecting environmental conditions, such as light, sedimentation, and physical disturbance. Sea-ice dynamics are changing in response to climate, but there is limited understanding of how this might affect shallow marine environments and benthos. Here we present a unique set of physical and biological data from a single region of Antarctic coast, and use it to gain insights into factors shaping polar benthic communities. At sites encompassing a gradient of sea-ice duration, we measured temporal and spatial variation in light and sedimentation and hard-substrate communities at different depths and substrate orientations. Biological trends were highly correlated with sea-ice duration, and appear to be driven by opposing gradients in light and sedimentation. As sea-ice duration decreased, there was increased light and reduced sedimentation, and concurrent shifts in community structure from invertebrate to algal dominance. Trends were strongest on shallower, horizontal surfaces, which are most exposed to light and sedimentation. Depth and substrate orientation appear to mediate exposure of benthos to these factors, thereby tempering effects of sea-ice and increasing biological heterogeneity. However, while light and sedimentation both varied spatially with sea-ice, their dynamics differed temporally. Light was sensitive to the site-specific date of sea-ice breakout, whereas sedimentation fluctuated at a regional scale coincident with the summer phytoplankton bloom. Sea-ice duration is clearly the overarching force structuring these shallow Antarctic benthic communities, but direct effects are imposed via light and sedimentation, and mediated by habitat characteristics. PMID:28076438

The Roles of Sea-Ice, Light and Sedimentation in Structuring Shallow Antarctic Benthic Communities.

PubMed

Clark, Graeme F; Stark, Jonathan S; Palmer, Anne S; Riddle, Martin J; Johnston, Emma L

2017-01-01

On polar coasts, seasonal sea-ice duration strongly influences shallow marine environments by affecting environmental conditions, such as light, sedimentation, and physical disturbance. Sea-ice dynamics are changing in response to climate, but there is limited understanding of how this might affect shallow marine environments and benthos. Here we present a unique set of physical and biological data from a single region of Antarctic coast, and use it to gain insights into factors shaping polar benthic communities. At sites encompassing a gradient of sea-ice duration, we measured temporal and spatial variation in light and sedimentation and hard-substrate communities at different depths and substrate orientations. Biological trends were highly correlated with sea-ice duration, and appear to be driven by opposing gradients in light and sedimentation. As sea-ice duration decreased, there was increased light and reduced sedimentation, and concurrent shifts in community structure from invertebrate to algal dominance. Trends were strongest on shallower, horizontal surfaces, which are most exposed to light and sedimentation. Depth and substrate orientation appear to mediate exposure of benthos to these factors, thereby tempering effects of sea-ice and increasing biological heterogeneity. However, while light and sedimentation both varied spatially with sea-ice, their dynamics differed temporally. Light was sensitive to the site-specific date of sea-ice breakout, whereas sedimentation fluctuated at a regional scale coincident with the summer phytoplankton bloom. Sea-ice duration is clearly the overarching force structuring these shallow Antarctic benthic communities, but direct effects are imposed via light and sedimentation, and mediated by habitat characteristics.

Conventional and technical diving surveys reveal elevated biomass and differing fish community composition from shallow and upper mesophotic zones of a remote United States coral reef.

PubMed

Muñoz, Roldan C; Buckel, Christine A; Whitfield, Paula E; Viehman, Shay; Clark, Randy; Taylor, J Christopher; Degan, Brian P; Hickerson, Emma L

2017-01-01

The world's coral reefs appear to be in a global decline, yet most previous research on coral reefs has taken place at depths shallower than 30 m. Mesophotic coral ecosystem (depths deeper than ~30 m) studies have revealed extensive, productive habitats and rich communities. Despite recent advances, mesophotic coral ecosystems remain understudied due to challenges with sampling at deeper depths. The few previous studies of mesophotic coral ecosystems have shown variation across locations in depth-specific species composition and assemblage shifts, potentially a response to differences in habitat or light availability/water clarity. This study utilized scuba to examine fish and benthic communities from shallow and upper mesophotic (to 45 m) zones of Flower Garden Banks National Marine Sanctuary (FGBNMS, 28°0'N; 93°50'W) from 2010-2012. Dominant planktivores were ubiquitous in shallow and upper mesophotic habitats, and comparisons with previous shallow research suggest this community distribution has persisted for over 30 years. Planktivores were abundant in shallow low-relief habitats on the periphery of the coral reef, and some of these sites that contained habitat transitioning from high to low relief supported high biomass of benthic predators. These peripheral sites at FGBNMS may be important for the trophic transfer of oceanic energy to the benthic coral reef. Distinct differences between upper mesophotic and shallow communities were also observed. These included greater overall fish (as well as apex predator) biomass in the upper mesophotic, differences in apex predator community composition between depth zones, and greater percent cover of algae, rubble, sand, and sponges in the upper mesophotic. Greater fish biomass in the upper mesophotic and similar fish community composition between depth zones provide preliminary support that upper mesophotic habitats at FGBNMS have the capacity to serve as refugia for the shallow-water reefs. Diving surveys of the upper mesophotic and shallow-water coral reef have revealed valuable information concerning the reef fish community in the northern Gulf of Mexico, with implications for the conservation of apex predators, oceanic coral reefs, and the future management of FGBNMS.

Conventional and technical diving surveys reveal elevated biomass and differing fish community composition from shallow and upper mesophotic zones of a remote United States coral reef

PubMed Central

Buckel, Christine A.; Whitfield, Paula E.; Viehman, Shay; Clark, Randy; Taylor, J. Christopher; Degan, Brian P.; Hickerson, Emma L.

2017-01-01

The world’s coral reefs appear to be in a global decline, yet most previous research on coral reefs has taken place at depths shallower than 30 m. Mesophotic coral ecosystem (depths deeper than ~30 m) studies have revealed extensive, productive habitats and rich communities. Despite recent advances, mesophotic coral ecosystems remain understudied due to challenges with sampling at deeper depths. The few previous studies of mesophotic coral ecosystems have shown variation across locations in depth-specific species composition and assemblage shifts, potentially a response to differences in habitat or light availability/water clarity. This study utilized scuba to examine fish and benthic communities from shallow and upper mesophotic (to 45 m) zones of Flower Garden Banks National Marine Sanctuary (FGBNMS, 28°0ʹN; 93°50ʹW) from 2010–2012. Dominant planktivores were ubiquitous in shallow and upper mesophotic habitats, and comparisons with previous shallow research suggest this community distribution has persisted for over 30 years. Planktivores were abundant in shallow low-relief habitats on the periphery of the coral reef, and some of these sites that contained habitat transitioning from high to low relief supported high biomass of benthic predators. These peripheral sites at FGBNMS may be important for the trophic transfer of oceanic energy to the benthic coral reef. Distinct differences between upper mesophotic and shallow communities were also observed. These included greater overall fish (as well as apex predator) biomass in the upper mesophotic, differences in apex predator community composition between depth zones, and greater percent cover of algae, rubble, sand, and sponges in the upper mesophotic. Greater fish biomass in the upper mesophotic and similar fish community composition between depth zones provide preliminary support that upper mesophotic habitats at FGBNMS have the capacity to serve as refugia for the shallow-water reefs. Diving surveys of the upper mesophotic and shallow-water coral reef have revealed valuable information concerning the reef fish community in the northern Gulf of Mexico, with implications for the conservation of apex predators, oceanic coral reefs, and the future management of FGBNMS. PMID:29161314

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

Seagrass communities are a major feature of shallow marine areas throughout the world. The marine spermatophyte, Thalassia testudinum Konig, is the dominant seagrass in southeast Florida and the Florida Gulf coast. The trophic interaction between the fishes and the macrobenthic and cryptic fauna found in the area was examined. Based on digestive tract analysis, the principal interaction between the primary consumers of the study area and the higher trophic level predators was via the polychaetes and peracaridean crustaceans. The mollusks which contributed significantly to the benthic biomass were not a preferred food for the animals frequenting the study site. Themore » maximum biomass in any benthic and cryptic samples was 3.35 g dry/m/sup 2/. The majority of the fishes captured were foragers over a wide area. The main residents were the syngnathids and the goldspotted killifish, Floridichthys carpio. It was felt that the predator population was limited by the small stock of polychaetes and peracaridean crustaceans which had a maximum biomass in any one sample equivalent to 1.40 g dry/m/sup 2/.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brook, I.M.

Seagrass communities are a major feature of shallow marine areas throughout the world. The marine spermatophyte Thalassia testudinum is the dominant seagrass in southeast Florida and the Florida Gulf coast. The trophic interaction between the fishes and the macrobenthic and cryptic fauna found in the area was examined. Based on digestive tract analysis, the principal interaction between the primary consumers of the study area and the higher trophic level predators was via the polychaetes and peracaridean crustaceans. The mollusks which contributed significantly to the benthic biomass were not a preferred food for the animals frequenting the study site. The maximummore » mollusk biomass in any benthic and cryptic sample was 2.31 g dry/m/sup 2/. It was felt that the predator population was limited by the small stock of polychaetes and peracaridean crustaceans which had a maximum biomass in any one sample equivalent to 1.74 g dry/m/sup 2/. The majority of the fishes captured were foragers over a wide area. The main residents were the syngnathids and the gold-spotted killifish, Floridichthys carpio.« less

Microbes mediate carbon and nitrogen retention in shallow photic sediments

NASA Astrophysics Data System (ADS)

Hardison, A.; Anderson, I.; Canuel, E. A.; Tobias, C.; Veuger, B.

2009-12-01

Sediments in shallow coastal bays are sites of intense biogeochemical cycling facilitated by a complex microbial consortium. Unlike deeper coastal environments, much of the benthos is illuminated by sunlight in these bays. As a result, benthic autotrophs such as benthic microalgae (BMA) and macroalgae play an integral role in nutrient cycling. Investigating pathways of carbon (C) and nitrogen (N) flow through individual compartments within the sediment microbial community has previously proved challenging due to methodological difficulties. However, it is now possible using stable isotopes and microbial biomarkers such as fatty acids and amino acids to track C and N flow through individual microbial pools. We investigated the uptake and retention of C and N by bacteria and BMA in a shallow subtidal system. Using bulk and compound specific isotopic analysis, we traced the pathways of dissolved inorganic 13C and 15N under various treatments: 1) in ambient light or dark, 2) from porewater or water column sources, and 3) in the presence or absence of bloom forming nuisance macroalgae. Excess 13C and 15N in THAAs and excess 13C in total PLFAs showed a strong dependence on light. Enrichment of these pools represents uptake by the microbial community, which can include both autotrophic and heterotrophic components. Higher excess 13C in benthic microalgal fatty acids (C20, C22 PUFAs) provides evidence that benthic microalgae were fixing 13C. Aditionally, the ratio of excess 13C in branched fatty acids to microbial fatty acids (BAR) and excess 13C and 15N in D-Ala to L-Ala (D/L-Ala) were low, suggesting dominance by benthic microalgae over bacteria to total label incorporation. Our results support uptake and retention of C and N by the sediment microbial community and indicate a tight coupling between BMA and bacteria in shallow illuminated systems. This uptake is diminished in the presence of macroalgae, likely due to shading and/or nutrient competition. Therefore, macroalgae reduce the retention of C and N within surface sediments, diminishing the role of the microbial community in nutrient cycling processes.

Evaluation of seabed mapping methods for fine-scale classification of extremely shallow benthic habitats - Application to the Venice Lagoon, Italy

NASA Astrophysics Data System (ADS)

Montereale Gavazzi, G.; Madricardo, F.; Janowski, L.; Kruss, A.; Blondel, P.; Sigovini, M.; Foglini, F.

2016-03-01

Recent technological developments of multibeam echosounder systems (MBES) allow mapping of benthic habitats with unprecedented detail. MBES can now be employed in extremely shallow waters, challenging data acquisition (as these instruments were often designed for deeper waters) and data interpretation (honed on datasets with resolution sometimes orders of magnitude lower). With extremely high-resolution bathymetry and co-located backscatter data, it is now possible to map the spatial distribution of fine scale benthic habitats, even identifying the acoustic signatures of single sponges. In this context, it is necessary to understand which of the commonly used segmentation methods is best suited to account for such level of detail. At the same time, new sampling protocols for precisely geo-referenced ground truth data need to be developed to validate the benthic environmental classification. This study focuses on a dataset collected in a shallow (2-10 m deep) tidal channel of the Lagoon of Venice, Italy. Using 0.05-m and 0.2-m raster grids, we compared a range of classifications, both pixel-based and object-based approaches, including manual, Maximum Likelihood Classifier, Jenks Optimization clustering, textural analysis and Object Based Image Analysis. Through a comprehensive and accurately geo-referenced ground truth dataset, we were able to identify five different classes of the substrate composition, including sponges, mixed submerged aquatic vegetation, mixed detritic bottom (fine and coarse) and unconsolidated bare sediment. We computed estimates of accuracy (namely Overall, User, Producer Accuracies and the Kappa statistic) by cross tabulating predicted and reference instances. Overall, pixel based segmentations produced the highest accuracies and the accuracy assessment is strongly dependent on the number of classes chosen for the thematic output. Tidal channels in the Venice Lagoon are extremely important in terms of habitats and sediment distribution, particularly within the context of the new tidal barrier being built. However, they had remained largely unexplored until now, because of the surveying challenges. The application of this remote sensing approach, combined with targeted sampling, opens a new perspective in the monitoring of benthic habitats in view of a knowledge-based management of natural resources in shallow coastal areas.

Trace fossils and substrates of the terminal Proterozoic–Cambrian transition: Implications for the record of early bilaterians and sediment mixing

PubMed Central

Droser, Mary L.; Jensen, Sören; Gehling, James G.

2002-01-01

The trace fossil record is important in determining the timing of the appearance of bilaterian animals. A conservative estimate puts this time at ≈555 million years ago. The preservational potential of traces made close to the sediment–water interface is crucial to detecting early benthic activity. Our studies on earliest Cambrian sediments suggest that shallow tiers were preserved to a greater extent than typical for most of the Phanerozoic, which can be attributed both directly and indirectly to the low levels of sediment mixing. The low levels of sediment mixing meant that thin event beds were preserved. The shallow depth of sediment mixing also meant that muddy sediments were firm close to the sediment–water interface, increasing the likelihood of recording shallow-tier trace fossils in muddy sediments. Overall, trace fossils can provide a sound record of the onset of bilaterian benthic activity. PMID:12271130

Herbivorous snails can increase water clarity by stimulating growth of benthic algae.

PubMed

Zhang, Xiufeng; Taylor, William D; Rudstam, Lars G

2017-11-01

Eutrophication in shallow lakes is characterized by a switch from benthic to pelagic dominance of primary productivity that leads to turbid water, while benthification is characterized by a shift in primary production from the pelagic zone to the benthos associated with clear water. A 12-week mesocosm experiment tested the hypothesis that the herbivorous snail Bellamya aeruginosa stimulates the growth of pelagic algae through grazing on benthic algae and through accelerating nutrient release from sediment. A tube-microcosm experiment using 32 P-PO 4 as a tracer tested the effects of the snails on the release of sediment phosphorus (P). The mesocosm experiment recorded greater total nitrogen (TN) concentrations and a higher ratio of TN:TP in the overlying water, and a higher light intensity and biomass of benthic algae as measured by chlorophyll a (Chl a) in the snail treatment than in the control. Concentrations of total phosphorus (TP), total suspended solids (TSSs), and inorganic suspended solids (ISSs) in the overlying water were lower in the snail treatment than in the control, though no significant difference in Chl a of pelagic algae between the snail treatment and control was observed. In the microcosm experiment, 32 P activity in the overlying water was higher in the snail treatment than in the control, indicating that snails accelerated P release from the sediment. Our interpretation of these results is that snails enhanced growth of benthic algae and thereby improved water clarity despite grazing on the benthic algae and enhancing P release from the sediment. The rehabilitation of native snail populations may therefore enhance the recovery of eutrophic shallow lakes to a clear water state by stimulating growth of benthic algae.

Thirty-Three Years of Ocean Benthic Warming Along the U.S. Northeast Continental Shelf and Slope: Patterns, Drivers, and Ecological Consequences

NASA Astrophysics Data System (ADS)

Kavanaugh, Maria T.; Rheuban, Jennie E.; Luis, Kelly M. A.; Doney, Scott C.

2017-12-01

The U.S. Northeast Continental Shelf is experiencing rapid warming, with potentially profound consequences to marine ecosystems. While satellites document multiple scales of spatial and temporal variability on the surface, our understanding of the status, trends, and drivers of the benthic environmental change remains limited. We interpolated sparse benthic temperature data along the New England Shelf and upper Slope using a seasonally dynamic, regionally specific multiple linear regression model that merged in situ and remote sensing data. The statistical model predicted nearly 90% of the variability of the data, resulting in a synoptic time series spanning over three decades from 1982 to 2014. Benthic temperatures increased throughout the domain, including in the Gulf of Maine. Rates of benthic warming ranged from 0.1 to 0.4°C per decade, with fastest rates occurring in shallow, nearshore regions and on Georges Bank, the latter exceeding rates observed in the surface. Rates of benthic warming were up to 1.6 times faster in winter than the rest of the year in many regions, with important implications for disease occurrence and energetics of overwintering species. Drivers of warming varied over the domain. In southern New England and the mid-Atlantic shallow Shelf regions, benthic warming was tightly coupled to changes in SST, whereas both regional and basin-scale changes in ocean circulation affect temperatures in the Gulf of Maine, the Continental Shelf, and Georges Banks. These results highlight data gaps, the current feasibility of prediction from remotely sensed variables, and the need for improved understanding on how climate may affect seasonally specific ecological processes.

Thirty-Three Years of Ocean Benthic Warming Along the U.S. Northeast Continental Shelf and Slope: Patterns, Drivers, and Ecological Consequences.

PubMed

Kavanaugh, Maria T; Rheuban, Jennie E; Luis, Kelly M A; Doney, Scott C

2017-12-01

The U.S. Northeast Continental Shelf is experiencing rapid warming, with potentially profound consequences to marine ecosystems. While satellites document multiple scales of spatial and temporal variability on the surface, our understanding of the status, trends, and drivers of the benthic environmental change remains limited. We interpolated sparse benthic temperature data along the New England Shelf and upper Slope using a seasonally dynamic, regionally specific multiple linear regression model that merged in situ and remote sensing data. The statistical model predicted nearly 90% of the variability of the data, resulting in a synoptic time series spanning over three decades from 1982 to 2014. Benthic temperatures increased throughout the domain, including in the Gulf of Maine. Rates of benthic warming ranged from 0.1 to 0.4°C per decade, with fastest rates occurring in shallow, nearshore regions and on Georges Bank, the latter exceeding rates observed in the surface. Rates of benthic warming were up to 1.6 times faster in winter than the rest of the year in many regions, with important implications for disease occurrence and energetics of overwintering species. Drivers of warming varied over the domain. In southern New England and the mid-Atlantic shallow Shelf regions, benthic warming was tightly coupled to changes in SST, whereas both regional and basin-scale changes in ocean circulation affect temperatures in the Gulf of Maine, the Continental Shelf, and Georges Banks. These results highlight data gaps, the current feasibility of prediction from remotely sensed variables, and the need for improved understanding on how climate may affect seasonally specific ecological processes.

Benthic fluxes of oxygen and inorganic nutrients in the archipelago of Gulf of Finland, Baltic Sea - Effects of sediment resuspension measured in situ

NASA Astrophysics Data System (ADS)

Niemistö, Juha; Kononets, Mikhail; Ekeroth, Nils; Tallberg, Petra; Tengberg, Anders; Hall, Per O. J.

2018-05-01

Benthic fluxes of oxygen and dissolved inorganic nutrients; phosphate (DIP), ammonium (NH4), nitrate + nitrite (NOx), and silicate (DSi); and the effects of resuspension on these were studied in situ with the Göteborg benthic landers in the Gulf of Finland archipelago, Baltic Sea. The benthic fluxes were examined at two shallow stations at depths of 7 m and 20 m in May and August 2014. Resuspension altered benthic fluxes of oxygen and nutrients in most of the experiments in August, but not in May, which was mainly due to weaker resuspension treatments in spring. Additionally, the benthic nutrient regeneration rates were higher and redox conditions lower in August when the water was warmer. In August, resuspension increased the benthic oxygen uptake by 33-35%, which was, in addition to stronger resuspension treatment, attributed to higher amounts of dissolved reduced substances in the sediment pore water in comparison to conditions in May. Adsorption onto newly formed iron oxyhydroxides could explain the uptake of DIP by the sediment at the 20 m station and the lowering of the DSi efflux by 31% at the 7 m station during resuspension in August. In addition, resuspension promoted nitrification, as indicated by increased NOx fluxes at both stations (by 30% and 27% at the 7 m and 20 m station, respectively) and a lowered NH4 flux (by 48%) at the 7 m station. Predicted increases in the magnitude and frequency of resuspension will thus markedly affect the transport of phosphorus and silicon and the cycling of nitrogen in the shallow areas of the Gulf of Finland.

Differences in biological traits composition of benthic assemblages between unimpacted habitats.

PubMed

Bolam, S G; Garcia, C; Eggleton, J; Kenny, A J; Buhl-Mortensen, L; Gonzalez-Mirelis, G; van Kooten, T; Dinesen, G; Hansen, J; Hiddink, J G; Sciberras, M; Smith, C; Papadopoulou, N; Gumus, A; Van Hoey, G; Eigaard, O R; Bastardie, F; Rijnsdorp, A D

2017-05-01

There is an implicit requirement under contemporary policy drivers to understand the characteristics of benthic communities under anthropogenically-unimpacted scenarios. We used a trait-based approach on a large dataset from across the European shelf to determine how functional characteristics of unimpacted benthic assemblages vary between different sedimentary habitats. Assemblages in deep, muddy environments unaffected by anthropogenic disturbance show increased proportions of downward conveyors and surface deposit-feeders, while burrowing, diffusive mixing, scavenging and predation traits assume greater numerical proportions in shallower habitats. Deep, coarser sediments are numerically more dominated by sessile, upward conveyors and suspension feeders. In contrast, unimpacted assemblages of coarse sediments in shallower regions are proportionally dominated by the diffusive mixers, burrowers, scavengers and predators. Finally, assemblages of gravelly sediments exhibit a relatively greater numerical dominance of non-bioturbators and asexual reproducers. These findings may be used to form the basis of ranking habitats along a functional sensitivity gradient. Crown Copyright © 2017. Published by Elsevier Ltd. All rights reserved.

Effect of abalone farming on seawater movement and benthic foraminiferal assemblage of Zostera marina in the inner bay of Wando, South Korea.

PubMed

Lee, Yeon Gyu; Choi, Yang Ho; Jeong, Da Un; Lee, Jung Sick; Kim, Yong Wan; Park, Jung Jun; Choi, Jae Ung

2016-08-15

Tidal current survey as well as geochemical and benthic foraminiferal analyses of sediment cores were conducted in an abalone farm and a Zostera bed to understand the degree to which the abalone farm facilities installed along a channel in a shallow sea affect the benthic environment and ecology. In the abalone farm, Ammonia beccarii-Pseudoparrella naraensis-Elphidium somaense-Rosalina globularis-Trochammina hadai and P. naraensis-E. somaense-A. beccarii-T. hadai assemblages appeared owing to an increase in the total nitrogen content from the biodeposits. The Zostera bed consisted of A. beccarii-P. naraensis-Buccella frigida-T. hadai assemblage owing to the gradual expansion of a brackish shallow-water environment by the rapidly decreasing current speed, and it may have flourished. Moreover, the total sulfur, Zn, Cr, and Cu contents in the sediments decreased remarkably more than those of the pre-abalone farming did, caused by the vigorous activity of Zostera marina physiology. Copyright © 2016 Elsevier Ltd. All rights reserved.

Mass extinctions in the deep sea

NASA Technical Reports Server (NTRS)

Thomas, E.

1988-01-01

The character of mass extinctions can be assessed by studying extinction patterns of organisms, the fabric of the extinction, and assessing the environmental niche and mode of life of survivors. Deep-sea benthic foraminifera have been listed as little affected by the Cretaceous-Tertiary (K-T) mass extinction, but very few quantitative data are available. New data on deep-sea Late Maestrichtian-Eocene benthic foraminifera from Maud Rise (Antractica) indicate that about 10 percent of the species living at depths of 2000 to 2500 m had last appearances within 1 my of the Cretaceous-Tertiary (K-T) boundary, versus about 25 percent of species at 1000 to 1500 m. Many survivors from the Cretaceous became extinct in a period of global deep-sea benthic foraminiferal extinction at the end of the Paleocene, a time otherwise marked by very few extinctions. Preliminary conclusions suggest that the deep oceanic environment is essentially decoupled from the shallow marine and terrestrial environment, and that even major disturbances of one of these will not greatly affect the other. This gives deep-sea benthic faunas a good opportunity to recolonize shallow environments from greater depths and vice versa after massive extinctions. The decoupling means that data on deep-sea benthic boundary was caused by the environmental effects of asteriod impact or excessive volcanism. The benthic foraminiferal data strongly suggest, however, that the environmental results were strongest at the Earth's surface, and that there was no major disturbance of the deep ocean; this pattern might result both from excessive volcanism and from an impact on land.

Iceberg killing fields limit huge potential for benthic blue carbon in Antarctic shallows.

PubMed

Barnes, David K A

2017-07-01

Climate-forced ice losses are increasing potential for iceberg-seabed collisions, termed ice scour. At Ryder Bay, West Antarctic Peninsula (WAP) sea ice, oceanography, phytoplankton and encrusting zoobenthos have been monitored since 1998. In 2003, grids of seabed markers, covering 225 m 2 , were established, surveyed and replaced annually to measure ice scour frequency. Disturbance history has been recorded for each m 2 of seabed monitored at 5-25 m for ~13 years. Encrusting fauna, collected from impacted and nonimpacted metres each year, show coincident benthos responses in growth, mortality and mass of benthic immobilized carbon. Encrusting benthic growth was mainly determined by microalgal bloom duration; each day, nanophytoplankton exceeded 200 μg L -1 produced ~0.05 mm radial growth of bryozoans, and sea temperature >0 °C added 0.002 mm day -1 . Mortality and persistence of growth, as benthic carbon immobilization, were mainly influenced by ice scour. Nearly 30% of monitored seabed was hit each year, and just 7% of shallows were not hit. Hits in deeper water were more deadly, but less frequent, so mortality decreased with depth. Five-year recovery time doubled benthic carbon stocks. Scour-driven mortality varied annually, with two-thirds of all monitored fauna killed in a single year (2009). Reduced fast ice after 2006 ramped iceberg scouring, killing half the encrusting benthos each year in following years. Ice scour coupled with low phytoplankton biomass drove a phase shift to high mortality and depressed zoobenthic immobilized carbon stocks, which has persevered for 10 years since. Stocks of immobilized benthic carbon averaged nearly 15 g m -2 . WAP ice scouring may be recycling 80 000 tonnes of carbon yr -1 . Without scouring, such carbon would remain immobilized and the 2.3% of shelf which are shallows could be as productive as all the remaining continental shelf. The region's future, when glaciers reach grounding lines and iceberg production diminishes, is as a major global sink of carbon storage. © 2016 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

History of benthic research in the English Channel: From general patterns of communities to habitat mosaic description

NASA Astrophysics Data System (ADS)

Dauvin, Jean-Claude

2015-06-01

Benthic studies in the English Channel (EC), a shallow megatidal and epicontinental sea, began in the 1960s and 1970s with the work of teams led by Norman Holme (UK) and Louis Cabioch (F). During this period, benthic sampling was mainly qualitative, i.e. using a device such as the 'Rallier du Baty' dredge in the case of the French team and a modified anchor dredge in the case of the British team. Studies were focused on acquiring knowledge of the main distributions of benthic communities and species. Surveys on the scale of the whole EC led to the recognition of general features and two main patterns were identified: 1) the role of hydrodynamics on the spatial distribution of sediment, benthic species and communities; 2) the presence of a west-east climatic gradient of faunal impoverishment. Benthic studies in the 1980s-1990s were focused on the beginning of the implementation of long-term survey at a limited number of sites to identify seasonal and multi-annual changes. In the first decade of the 2000s, the implementation of the European Water Framework Directive and the Marine Strategy Framework Directive to define the Ecological Quality Status of marine environments increased the need to acquire better information of the structure and functioning of benthic communities, since benthic species and habitats were recognised as good indicators of human pressure on marine ecosystems. Faced with the increase of human maritime activities, the appearance of invasive species and the need to preserve sensitive marine habitats, benthic studies have been focused on developing a 'toolkit' to help in the decision-making and planning for both sound governance and sustainable management of marine resources and human activities in the English Channel. Multidisciplinary approaches were used to differentiate habitats in a more precise detail. Both indirect (side-scan sonar, ROV) and direct (grab sampling with benthos identification and grain-size analyses) approaches were used and combined to allow the description of benthic habitats using numerous descriptors. These approaches were mainly applied on a local scale, leading to the identification of habitat mosaics mainly in coarse sands, gravels and pebbly areas which cover 80% of the EC seabed. They also allowed the enrichment of the EUNIS habitat classification for infralittoral and circalittoral zones taking into account the scale of observations of benthic habitats. Moreover, several recommendations for future benthic studies are proposed within a HABITAT approach.

Benthic-planktonic coupling, regime shifts, and whole-lake primary production in shallow lakes.

PubMed

Genkai-Kato, Motomi; Vadeboncoeur, Yvonne; Liboriussen, Lone; Jeppesen, Erik

2012-03-01

Alternative stable states in shallow lakes are typically characterized by submerged macrophyte (clear-water state) or phytoplankton (turbid state) dominance. However, a clear-water state may occur in eutrophic lakes even when macrophytes are absent. To test whether sediment algae could cause a regime shift in the absence of macrophytes, we developed a model of benthic (periphyton) and planktonic (phytoplankton) primary production using parameters derived from a shallow macrophyte-free lake that shifted from a turbid to a clear-water state following fish removal (biomanipulation). The model includes a negative feedback effect of periphyton on phosphorus (P) release from sediments. This in turn induces a positive feedback between phytoplankton production and P release. Scenarios incorporating a gradient of external P loading rates revealed that (1) periphyton and phytoplankton both contributed substantially to whole-lake production over a broad range of external P loading in a clear-water state; (2) during the clear-water state, the loss of benthic production was gradually replaced by phytoplankton production, leaving whole-lake production largely unchanged; (3) the responses of lakes to biomanipulation and increased external P loading were both dependent on lake morphometry; and (4) the capacity of periphyton to buffer the effects of increased external P loading and maintain a clear-water state was highly sensitive to relationships between light availability at the sediment surface and the of P release. Our model suggests a mechanism for the persistence of alternative states in shallow macrophyte-free lakes and demonstrates that regime shifts may trigger profound changes in ecosystem structure and function.

Tropical species at the northern limit of their range: composition and distribution in Bermuda's benthic habitats in relation to depth and light availability.

PubMed

Manuel, Sarah A; Coates, Kathryn A; Kenworthy, W Judson; Fourqurean, James W

2013-08-01

Surveys were undertaken on the shallow Bermuda marine platform between 2006 and 2008 to provide a baseline of the distribution, condition and environmental characteristics of benthic communities. Bermuda is located in temperate latitudes but coral reefs, tropical seagrasses and calcareous green algae are common in the shallow waters of the platform. The dominant organisms of these communities are all living at or near their northern latitudinal range limits in the Atlantic Ocean. Among the major benthic autotrophs surveyed, seagrasses were most restricted by light availability. We found that the relatively slow-growing and long-lived seagrass Thalassia testudinum is restricted to habitats with much higher light availability than in the tropical locations where this species is commonly found. In contrast, the faster growing tropical seagrasses in Bermuda, Syringodium filiforme, Halodule sp. and Halophila decipiens, had similar ecological compensation depths (ECD) as in tropical locations. Increasing sea surface temperatures, concomitant with global climate change, may either drive or allow the poleward extensions of the ranges of such tropical species. However, due to latitudinal light limitations at least one abundant and common tropical autotroph, T. testudinum, is able to occupy only shallower depths at the more temperate latitudes of Bermuda. We hypothesize that the poleward shift of seagrass species ranges would be accompanied by restrictions to even shallower depths of T. testudinum and by very different seagrass community structures than in tropical locations. Copyright © 2013 Elsevier Ltd. All rights reserved.

Processes Affecting the Variability of Fluorescence Signals from Benthic Targets in Shallow Waters

DTIC Science & Technology

1998-09-30

analysis of zooxanthellae isolated from coral samples. We examined fluorescence lifetimes from benthic targets using femtosecond laser based Single...a temporal resolution 5 ps. The laser set-up was employed for laboratory studies of fluorescence lifetimes from model targets such as zooxanthellae ...seagrasses. Over 200 measurements on isolated zooxanthellae were conducted with a bench-top FRR fluorometer and Phase Shift Fluorometer. During the CoBOP-98

Trophic segregation of a fish assemblage along lateral depth gradients in a subtropical coastal lagoon revealed by stable isotope analyses.

PubMed

Mont'Alverne, R; Pereyra, P E R; Garcia, A M

2016-07-01

Stable isotopes were used to evaluate the hypothesis that fish assemblages occurring in shallow and deep areas of a large coastal lagoon are structured in partially segregated trophic modules with consumers showing contrasting reliance on benthic or pelagic food sources. The results revealed that fishes in deep areas were mainly dependent on particulate organic matter in the sediment (SOM), whereas emergent macrophytes were as important as SOM to fish consumers in shallow areas. Conceptual trophic diagrams depicting relationships among basal food sources and consumers in different regions of the lagoon highlighted the greater use of multiple basal food sources by more feeding mode functional guilds in shallow water compared with the use of predominantly benthic resources (SOM) in deep areas. The findings appear to corroborate the initial hypothesis and offer complementary perspectives in understanding the role of spatial ecology in structuring coastal ecosystem function and productivity. © 2016 The Fisheries Society of the British Isles.

Effects of Streambank Fencing of Near-Stream Pasture Land on a Small Watershed in Lancaster County, Pennsylvania

USGS Publications Warehouse

Galeone, Daniel G.; Low, Dennis J.; Brightbill, Robin A.

2006-01-01

This study indicated that a small buffer width along a stream in pasture land can have a positive influence on surface-water quality, benthic macroinvertebrates, and near-stream shallow ground-water quality. Overland runoff processes that move suspended sediment to the stream were controlled (or reduced) to some extent by the vegetative buffer established. Results indicated streambank fencing resulted in decreases in N-species, total-P, and suspended-sediment concentrations and yields at the outlet of the treatment basin relative to untreated sites; however, dissolved-P concentrations and yields increased. These results indicate that nutrient management, in conjunction with streambank fencing, is important in helping to control nutrient loadings to streams in this agricultural setting. An upstream site (T-2) in the treatment basin showed post-treatment reductions in suspended-sediment yields and increases in N and P yields. The different results for these treated sites indicates the effects of streambank fencing should be studied at as large a scale as possible because field-scale influences on water quality as drainage area decreases can mute the effects of fencing. Benthic-macroinvertebrate data indicated streambank fencing had a positive influence on benthic macroinvertebrates and their habitat. More improvement was detected at the outlet of the treatment basin than the upstream sites. Probably the most important biological metric, taxa richness, indicated a greater number of benthic-macroinvertebrate taxa at treated relative to control sites after fencing. Results indicated fencing improved shallow ground-water quality (for the well nest in a stream-gaining area), as noted by decreased concentrations of N species and fecal-streptococcus counts. This improvement only occurred at the well nest where the stream was gaining water from the shallow ground-water system.

Shallow water processes govern system-wide phytoplankton bloom dynamics: A modeling study

USGS Publications Warehouse

Lucas, L.V.; Koseff, Jeffrey R.; Monismith, Stephen G.; Thompson, J.K.

2009-01-01

A pseudo-two-dimensional numerical model of estuarine phytoplankton growth and consumption, vertical turbulent mixing, and idealized cross-estuary transport was developed and applied to South San Francisco Bay. This estuary has two bathymetrically distinct habitat types (deep channel, shallow shoal) and associated differences in local net rates of phytoplankton growth and consumption, as well as differences in the water column's tendency to stratify. Because many physical and biological time scales relevant to algal population dynamics decrease with decreasing depth, process rates can be especially fast in the shallow water. We used the model to explore the potential significance of hydrodynamic connectivity between a channel and shoal and whether lateral transport can allow physical or biological processes (e.g. stratification, benthic grazing, light attenuation) in one sub-region to control phytoplankton biomass and bloom development in the adjacent sub-region. Model results for South San Francisco Bay suggest that lateral transport from a productive shoal can result in phytoplankton biomass accumulation in an adjacent deep, unproductive channel. The model further suggests that turbidity and benthic grazing in the shoal can control the occurrence of a bloom system-wide; whereas, turbidity, benthic grazing, and vertical density stratification in the channel are likely to only control local bloom occurrence or modify system-wide bloom magnitude. Measurements from a related field program are generally consistent with model-derived conclusions. ?? 2008 Elsevier B.V.

Palaeobathymetric Interpretations using Foraminiferal Data from the North-west Continental Shelf off Western Australia, IODP Expedition 356

NASA Astrophysics Data System (ADS)

Mamo, B. L.; Renema, W.; Auer, G.; Groeneveld, J.; Gallagher, S. J.; Fulthorpe, C.; Bogus, K.; Expedition 356 Scientists, I.

2016-12-01

In 2015, Integrated Ocean Discovery Program Expedition 356 drilled along the passive margin off the West Australian coast to investigate the history of the Indonesian Throughflow (ITF) and its integral role in the development of global thermohaline circulation and climate. Throughout the expedition, a suite of foraminiferal analyses were employed to assess stratigraphy and benthic environments. Planktic foraminifera were primarily used for biostratigraphy and an incredibly diverse benthic fauna ( 260 species) yielded information regarding palaeobathymetric settings and variable conditions at the sediment-water interface. Benthic foraminiferal biofacies are particularly sensitive to changes in environmental conditions and have rapid turnover making them ideal proxies for monitoring physical and chemical changes in marine environments. When these data are combined with a multi-proxy approach incorporating lithostratigraphic and other microfossil data, a robust understanding of past environments can be realised. Stretching from the Northern Carnarvon Basin north to the Roebuck Basin, several distinct biofacies were isolated at sites U1461-U1464 that reveal an array of marine settings and events that span from the Miocene through to the Pleistocene. These features include water depths ranging from Miocene shallows (including larger benthic foraminifera) to Pliocene bathyal depths ( 1000 m), the occurrence of key indicator species for both the Leeuwin Current and the West Pacific Warm Pool (Asterorotalia and Pseudorotalia), and episodes of downslope sediment transport. Here we present the main isolated biofacies, their associated lithofacies and their implications for reconstructing fluctuating sea-level, thermohaline circulation and sediment transport in a changing marine landscape.

Integrating Climate Change Resilience Features into the Incremental Refinement of an Existing Marine Park

PubMed Central

Beckley, Lynnath E.; Kobryn, Halina T.; Lombard, Amanda T.; Radford, Ben; Heyward, Andrew

2016-01-01

Marine protected area (MPA) designs are likely to require iterative refinement as new knowledge is gained. In particular, there is an increasing need to consider the effects of climate change, especially the ability of ecosystems to resist and/or recover from climate-related disturbances, within the MPA planning process. However, there has been limited research addressing the incorporation of climate change resilience into MPA design. This study used Marxan conservation planning software with fine-scale shallow water (<20 m) bathymetry and habitat maps, models of major benthic communities for deeper water, and comprehensive human use information from Ningaloo Marine Park in Western Australia to identify climate change resilience features to integrate into the incremental refinement of the marine park. The study assessed the representation of benthic habitats within the current marine park zones, identified priority areas of high resilience for inclusion within no-take zones and examined if any iterative refinements to the current no-take zones are necessary. Of the 65 habitat classes, 16 did not meet representation targets within the current no-take zones, most of which were in deeper offshore waters. These deeper areas also demonstrated the highest resilience values and, as such, Marxan outputs suggested minor increases to the current no-take zones in the deeper offshore areas. This work demonstrates that inclusion of fine-scale climate change resilience features within the design process for MPAs is feasible, and can be applied to future marine spatial planning practices globally. PMID:27529820

Ecological and evolutionary consequences of benthic community stasis in the very deep sea (>1500 m)

USGS Publications Warehouse

Buzas, Martin A.; Hayek, Lee-Ann C.; Culver, Stephen J.; Hayward, Bruce W.; Osterman, Lisa E.

2014-01-01

An enigma of deep-sea biodiversity research is that the abyss with its low productivity and densities appears to have a biodiversity similar to that of shallower depths. This conceptualization of similarity is based mainly on per-sample estimates (point diversity, within-habitat, or α-diversity). Here, we use a measure of between-sample within-community diversity (β1H) to examine benthic foraminiferal diversity between 333 stations within 49 communties from New Zealand, the South Atlantic, the Gulf of Mexico, the Norwegian Sea, and the Arctic. The communities are grouped into two depth categories: 200–1500 m and >1500 m. β1H diversity exhibits no evidence of regional differences. Instead, higher values at shallower depths are observed worldwide. At depths of >1500 m the average β1H is zero, indicating stasis or no biodiversity gradient. The difference in β1H-diversity explains why, despite species richness often being greater per sample at deeper depths, the total number of species is greater at shallower depths. The greater number of communities and higher rate of evolution resulting in shorter species durations at shallower depths is also consistent with higher β1H values.

Transport of Gas and Solutes in Permeable Estuarine Sediments

DTIC Science & Technology

2010-09-30

inhabited by microphytobenthos and seagrass . 2) To quantify the size range and composition of the gas bubbles in the sediment and the overlying water...characteristics of bubble ebullition in a shallow coastal environment with strong benthic photosynthesis (May 26-28). The goal was to determine the spatial and...each 50 μL air injection. Detection of small bubbles produced by benthic photosynthesis The goal was to assess whether the small bubbles

Photosynthesis as a Possible Source of Gas Bubbles in Shallow Sandy Coastal Sediments

DTIC Science & Technology

2010-09-30

gas bubbles can be formed when photosynthesis by benthic microalgae causes pore water to become supersaturated with oxygen. OBJECTIVES The...acoustic reflectivity. We also collected sediment samples from the upper few mm of sand to identify the dominant taxa of benthic microalgae present... microalgae in the samples. Following the untimely death of Dr. D.V. Holliday, the remaining team members are sharing the responsibility of analyzing data and

A comparison of measures of riverbed form for evaluating distributions of benthic fishes

USGS Publications Warehouse

Wildhaber, Mark L.; Lamberson, Peter J.; Galat, David L.

2003-01-01

A method to quantitatively characterize the bed forms of a large river and a preliminary test of the relationship between bed-form characteristics and catch per unit area of benthic fishes is presented. We used analog paper recordings of bathymetric data from the Missouri River and fish data collected from 1996 to 1998 at both the segment (???101-102-km) and macrohabitat (???10-1-100-km) spatial scales. Bed-form traces were transformed to digital data with image analysis software. The slope, mean residual, and SD of the residuals of the regression of depth versus distance along the bottom, as well as mean depth, were estimated for each trace. These four metrics were compared with sinuosity, fractal dimension, critical scale, and maximum mean angle for the same traces. Mean depth and sinuosity differed among segments and macrohabitats. Fractal-based measures of the relative depth of bottom troughs (critical scale) and smoothness (maximum mean angle) differed among segments. Statistics-based measures of the relative depth of bottom troughs (mean residual) and smoothness (SD of the residuals) differed among macrohabitats. Sites with shovelnose sturgeon Scaphirhynchus platorynchus were shallower and smoother than sites without shovelnose sturgeon. When compared with sites without sicklefin chub Macrhybopsis meeki, sites with sicklefin chub were shallower, had shallower troughs, and sloped more out of the flow of the river. Sites with sturgeon chub M. gelida were shallower, had shallower troughs, and were smoother than sites without sturgeon chub. Sites with and without channel catfish Ictalurus punctatus did not differ for any bed-form variables measured. Nonzero shovelnose sturgeon density increased with depth, whereas nonzero sturgeon chub density decreased with depth. Indices of bed-form structure demonstrated potential for describing the distribution and abundance of Missouri River benthic fishes. The observed fish patterns, though limited, provide valuable direction for future research into the habitat preferences of these fishes.

Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA: Implications for net ecosystem metabolism

USGS Publications Warehouse

Caffrey, J.M.; Cloern, J.E.; Grenz, C.

1998-01-01

We present results of an intensive sampling program designed to measure weekly changes in ecosystem respiration (oxygen consumption in the water column and sediments) around the 1996 spring bloom in South San Francisco Bay, California, USA. Measurements were made at a shallow site (2 m, where mean photic depth was 60% of the water column height) and a deep site (15 m, mean photic depth was only 20% of the water column). We also estimated phytoplankton primary production weekly at both sites to develop estimates of net oxygen flux as the sum of pelagic production (PP), pelagic respiration (PR) and benthic respiration (BR). Over the 14 wk period from February 5 to May 14, PP ranged from 2 to 210, PR from 9 to 289, and BR from 0.1 to 48 mmol O2 m-2 d-1, illustrating large variability of estuarine oxygen fluxes at the weekly time scale. Pelagic production exceeded total respiration at the shallow site, but not at the deep site, demonstrating that the shallow domains are net autotrophic but the deep domains are net heterotrophic, even during the period of the spring bloom. If we take into account the potential primary production by benthic microalgae, the estuary as a whole is net autotrophic during spring, net heterotrophic during the nonbloom seasons, and has a balanced net metabolism over a full annual period. The seasonal shift from net autotrophy to heterotrophy during the transition from spring to summer was accompanied by a large shift from dominance by pelagic respiration to dominance by benthic respiration. This suggests that changes in net ecosystem metabolism can reflect changes in the pathways of energy flow in shallow coastal ecosystems.

A transgressive Santonian-Campanian boundary sequence revisited - High resolution planktonic and benthic foraminifera stratigraphy of the Schattau section, Northern Calcareous Alps.

NASA Astrophysics Data System (ADS)

Wolfgring, Erik; Wagreich, Michael; Summesberger, Herbert; Kroh, Andreas

2016-04-01

The Schattau section is part of the Austrian Gosau Group, Northern Calcareous Alps. We record a Santonian to early Campanian transgressive sequence. Previous investigations already provide a biostratigraphic framework; a multidisciplinary study to reveal the local stratigraphy and palaeoenvironmental properties: Planktonic foraminifera, calcareous nannoplankton, ammonite, echinoid and crinoid biostratigraphy data suggest a Santonian to earliest Campanian age for this section (see Wagreich et al., 2009). This work aims at a high resolution assessment of foraminiferal assemblages recorded from a time interval that has undergone significant palaeoenvironmental changes. The Santonian Hochmoos Formation, with the Sandkalkbank Member representing it's topmost subunit, is overlain by the Santonian to Campanian Bibereck Formation. While The Hochmoos Formation records a shallowing succession that finds the Sandkalkbank Member (representing very shallow conditions, sometimes sub aerial exposure) at its top. The overlying Bibereck Formation records a distinct deepening trend displaying increasingly marine, neritic to outer neritic conditions. The stratigraphically older subunits of the Schattau sections are characterised by abundant larger benthic foraminifera (Nummofallotia cretacea), miliolid foraminifera (Quinqueloculina spp, Spiroloculina fassistomata) as well as rotaliid foraminifera (Hoeglundia spp., Gavellina spp.). The Sandkalkbank member marks the end of the shallow water sequence recorded from foraminifera assemblages at the Schattau section. Up section communities are characterised by increasing share of planktonic foraminifera. Biostratigraphic marker fossils like Dicarinella asymetrica and Sigalia sp. (decoratissima?) were identified and indicate a Santonian age for the Bibereck Formation. The appearance of Globotruncanita elevata and disappearance of D. asymetrica and Sigalia sp. Suggests an early Campanian age for the topmost part of the Schattau section. Tubular and bi- and triserial agglutinated foraminifera (e.g. Ammobaculites spp., Dorothia spp., Gaudryina spp., Tritaxia spp.) as well as spiral calcareous benthic foraminifera (Gavellinella spp., Lenticulina spp.) are recorded in the younger deposits at the Schattau section (in the Bibereck Formation). Developments in benthic foraminiferal taxa do not only seem to provide valuable information on palaeoenvironmental properties. The succession of certain benthic taxa (e.g.. Gavellinella spp.) provides valuable data on local benthic foraminiferal biostratigraphy which is particularly valuable if environmental factors inhibit the occurrence of planktonic foraminiferal markers. References: Wagreich, M., Summesberger, H., Kroh, A., 2010. Late Santonian bioevents in the Schattau section, Gosau Group of Austria - implications for the Santonian - Campanian boundary stratigraphy. Cretaceous Research, 31, 2, 181-191

Application of an eddy correlation system for the estimation of oxygen benthic fluxes in coastal permeable sediments impacted by submarine groundwater discharge

NASA Astrophysics Data System (ADS)

Donis, D.; Janssen, F.; Böttcher, M.; McGinnis, D.; Holtappels, M.; Wenzhöfer, F.

2012-04-01

Measurements of solute exchange across the sediment-water interface are crucial for marine environment monitoring. This interface has fundamental filter functions for the mass exchange between the seafloor and the water column. Being a non-invasive technique, the eddy correlation method, is probably the most accurate measurement for benthic fluxes. It does not interfere with local hydrodynamics and integrates over large areas, showing considerable advantages compared to traditional methods, i.e., microprofiles and benthic chambers. One of the most important exchange processes across the sediment-water interface is flux of oxygen, which is a predominant control factor for the biogeochemical activity in the sediment, carbon processing and the composition of benthic communities. The eddy correlation method performs simultaneous recordings of vertical velocities and oxygen concentrations at a specific distance to the seafloor and is becoming a standard method for resolving dissolved oxygen fluxes in aquatic systems. However, data treatment and interpretation, especially in shallow environments, is still challenging. One major concern in eddy correlation studies of coastal environments is how to consider surface wave motions that can dominate the turbulence range and that may bias flux calculations. A critical part of the data treatment thus is the removal of wave biases from the vertical velocity component, by separating the wave frequency oscillations (due to a tilted or miss-aligned sensor) from those containing meaningful flux contributions. Here we present in situ benthic oxygen exchange rates as determined by an eddy correlation system (ECS) and simultaneously deployed stirred benthic chambers. The study was carried out in a coastal ecosystem of the southern Baltic Sea that was impacted by low salinity groundwater discharge (Hel peninsula, Poland). Oxygen fluxes determined with ECS compared well with results from benthic chambers. Flux data and seepage rates are discussed in the context of groundwater and their importance for benthic biogeochemical processes in shallow sandy sediments. This work was supported by 7th framework EU ITN-project SENSEnet and BONUS+ project AMBER.

Influence of environmental properties on macrobenthos in the northwest Indian shelf.

PubMed

Jayaraj, K A; Jayalakshmi, K V; Saraladevi, K

2007-04-01

The paper deals with the standing stock of macrobenthic infauna and associated environmental factors influencing the benthic community in the shelf region of the northwest Indian coast. The data were collected onboard FORV Sagar Sampada during the winter monsoon (January-February, 2003) to understand the community structure and the factors influencing the benthic distribution. The environmental parameters, sediment characteristics and macrobenthic infauna were collected at 26 stations distributed in the depths between 30 and 200 m extending from Mormugao to Porbander. Total benthic abundance was high in lower depths (50-75 m), and low values noticed at 30 m depth contour was peculiar. Polychaetes were the dominant group and were more abundant in shallow and middle depths with moderate organic matter, clay and relatively high dissolved oxygen. On the other hand crustaceans and molluscs were more abundant in deeper areas having sandy sediment and low temperature. High richness and diversity of whole benthic groups observed in deeper depths counter balanced the opposite trend shown by polychaete species. Generally benthos preferred medium grain sized texture with low organic matter and high organic matter had an adverse effect especially on filter feeders. Deposit feeding polychaetes dominated in shallow depths while carnivore species in the middle depths. Ecologically, benthos were controlled by a combination of factors such as temperature, salinity, dissolved oxygen, sand and organic matter and no single factor could be considered as an ecological master factor.

Middle Miocene benthic foraminifera from the Al Khums area, northwestern Libya

NASA Astrophysics Data System (ADS)

El Baz, Sherif M.; Al Furjany, Ahmed

2018-02-01

The present study deals with the benthic foraminifera from three sections cropping out in the Al Khums area, northwestern Libya. Lithostratigraphically, these outcrops belong to the Al Khums Formation, which is locally subdivided into two informal members: An Naggazah and Ras Al Mannubiyah. Detailed investigation of the foraminiferal content led to the recognition of 27 species belonging to 16 genera and 13 families. The absence of index planktonic foraminifera does not enable the recognition of any planktonic biozone within the Al Khums Formation. The presence of the larger benthic foraminifera Borelis melo melo enables the assignment of a Middle Miocene age to this rock unit. The studied sections characterized by the common occurrence of benthic foraminiferal species living in a shallow neritic environment. This conclusion is corroborated by the co-occurrence of large oysters, corals and algae.

[Ichthyofauna associated to a shallow reef in Morrocoy National Park, Venezuela].

PubMed

López-Ordaz, A; Rodríguez-Quintal, J G

2010-10-01

Ichthyofauna associated to a shallow reef in Morrocoy National Park, Venezuela. Morrocoy National Park is one of the most studied coastal marine environments in Venezuela; however, efforts have been concentrated in south zone. In this study we select a shallow reef located in the north zone, characterized the benthic community and the structure of the fish community was studied using visual censuses. The benthic community was dominated by dead coral covered by algae (31%) and the live coral coverage was 12%. A total of 65 fish species belonging to 24 families were recorded, being Pomacentridae (43%), Scaridae (19%) and Haemulidae (15%) the most abundant families. Significant differences in the fish species abundances were found along the depth gradient, which could be related to the habitat characteristics, nevertheless herbivorous species dominance was evident at all depth strata. There seems to be a trend towards greater richness and density in the south zone reefs, and these differences may be related to the presence of extensive seagrass meadows and mangrove forests in that area or to differences in the recruitment patterns.

Coral Reefs at the Northernmost Tip of Borneo: An Assessment of Scleractinian Species Richness Patterns and Benthic Reef Assemblages

PubMed Central

Waheed, Zarinah; van Mil, Harald G. J.; Syed Hussein, Muhammad Ali; Jumin, Robecca; Golam Ahad, Bobita; Hoeksema, Bert W.

2015-01-01

The coral reefs at the northernmost tip of Sabah, Borneo will be established under a marine protected area: the Tun Mustapha Park (TMP) by the end of 2015. This area is a passage where the Sulu Sea meets the South China Sea and it is situated at the border of the area of maximum marine biodiversity, the Coral Triangle. The TMP includes fringing and patch reefs established on a relatively shallow sea floor. Surveys were carried out to examine features of the coral reefs in terms of scleractinian species richness, and benthic reef assemblages following the Reef Check substrate categories, with emphasis on hard coral cover. Variation in scleractinian diversity was based on the species composition of coral families Fungiidae (n = 39), Agariciidae (n = 30) and Euphylliidae (n = 15). The number of coral species was highest at reefs with a larger depth gradient i.e. at the periphery of the study area and in the deep South Banggi Channel. Average live hard coral cover across the sites was 49%. Only 7% of the examined reefs had > 75% hard coral cover, while the majority of the reef sites were rated fair (51%) and good (38%). Sites with low coral cover and high rubble fragments are evidence of blast fishing, although the observed damage appeared old. Depth was a dominant factor in influencing the coral species composition and benthic reef communities in the TMP. Besides filling in the information gaps regarding species richness and benthic cover for reef areas that were previously without any data, the results of this study together with information that is already available on the coral reefs of TMP will be used to make informed decisions on zoning plans for conservation priorities in the proposed park. PMID:26719987

Coral Reefs at the Northernmost Tip of Borneo: An Assessment of Scleractinian Species Richness Patterns and Benthic Reef Assemblages.

PubMed

Waheed, Zarinah; van Mil, Harald G J; Syed Hussein, Muhammad Ali; Jumin, Robecca; Golam Ahad, Bobita; Hoeksema, Bert W

2015-01-01

The coral reefs at the northernmost tip of Sabah, Borneo will be established under a marine protected area: the Tun Mustapha Park (TMP) by the end of 2015. This area is a passage where the Sulu Sea meets the South China Sea and it is situated at the border of the area of maximum marine biodiversity, the Coral Triangle. The TMP includes fringing and patch reefs established on a relatively shallow sea floor. Surveys were carried out to examine features of the coral reefs in terms of scleractinian species richness, and benthic reef assemblages following the Reef Check substrate categories, with emphasis on hard coral cover. Variation in scleractinian diversity was based on the species composition of coral families Fungiidae (n = 39), Agariciidae (n = 30) and Euphylliidae (n = 15). The number of coral species was highest at reefs with a larger depth gradient i.e. at the periphery of the study area and in the deep South Banggi Channel. Average live hard coral cover across the sites was 49%. Only 7% of the examined reefs had > 75% hard coral cover, while the majority of the reef sites were rated fair (51%) and good (38%). Sites with low coral cover and high rubble fragments are evidence of blast fishing, although the observed damage appeared old. Depth was a dominant factor in influencing the coral species composition and benthic reef communities in the TMP. Besides filling in the information gaps regarding species richness and benthic cover for reef areas that were previously without any data, the results of this study together with information that is already available on the coral reefs of TMP will be used to make informed decisions on zoning plans for conservation priorities in the proposed park.

Diel Variability in Seawater pH Relates to Calcification and Benthic Community Structure on Coral Reefs

PubMed Central

Martz, Todd R.; Brainard, Russell E.

2012-01-01

Community structure and assembly are determined in part by environmental heterogeneity. While reef-building corals respond negatively to warming (i.e. bleaching events) and ocean acidification (OA), the extent of present-day natural variability in pH on shallow reefs and ecological consequences for benthic assemblages is unknown. We documented high resolution temporal patterns in temperature and pH from three reefs in the central Pacific and examined how these data relate to community development and net accretion rates of early successional benthic organisms. These reefs experienced substantial diel fluctuations in temperature (0.78°C) and pH (>0.2) similar to the magnitude of ‘warming’ and ‘acidification’ expected over the next century. Where daily pH within the benthic boundary layer failed to exceed pelagic climatological seasonal lows, net accretion was slower and fleshy, non-calcifying benthic organisms dominated space. Thus, key aspects of coral reef ecosystem structure and function are presently related to natural diurnal variability in pH. PMID:22952785

Benthic foraminiferal paleoecology and depositional patterns during the Albian at DSDP Site 327 (Falkland Plateau)

NASA Astrophysics Data System (ADS)

Lopes, Fernando M.; Koutsoukos, Eduardo A. M.; Kochhann, Karlos G. D.; Savian, Jairo F.; Fauth, Gerson

2017-10-01

The present paleoenvironmental study uses a spectrum of analytical methods, such as benthic foraminiferal assemblages, total organic carbon (TOC), calcium carbonate (CaCO3) contents and magnetic susceptibility (MS), to monitor variations in primary productivity, bottom-water oxygenation and depositional patterns within the Albian interval recovered at DSDP Site 327, Hole A, Falkland Plateau. Thirty-three benthic foraminiferal species were identified in the studied section and, based on the abundances of morphogroups (epifaunal and shallow infaunal), two distinct associations were identified. Stratigraphic intervals dominated by the epifaunal morphogroup can be interpreted as indicative of bottom-waters with low-oxygen content. However, these decreases in oxygenation were not vigorous enough to establish a dominance of deep-infaunal morphotypes, as supported by the low TOC values. Intervals dominated by the shallow infaunal morphogroup were interpreted as subjected to moderate to high nutrient flux to the ocean floor. These intervals are associated with high MS values and low CaCO3 content, suggesting that dissolution processes, rather than increased primary productivity, controlled CaCO3 accumulation in the studied section. Furthermore, faunal analysis points to deposition in an outer neritic to upper bathyal paleoenvironment.

Mobile fishing gear reduces benthic megafaunal production on Georges Bank

USGS Publications Warehouse

Hermsen, J.M.; Collie, J.S.; Valentine, P.C.

2003-01-01

This study addresses the effect of mobile fishing gear disturbance on benthic megafaunal production on the gravel pavement of northern Georges Bank. From 1994 to 2000, we sampled benthic megafauna with a 1 m Naturalists' dredge at shallow (47 to 62 m) and deep (80 to 90 m) sites. The cessation of fishing in large areas of Georges Bank in January 1995 allowed us to monitor changes in production at a previously disturbed site. Production at a shallow disturbed site varied little over the sampling period (32 to 57 kcal m-2 yr-1) and was markedly lower than production at the nearby recovering site, where production increased from 17 kcal m-2yr -1 in 1994 before the closure to 215 kcal m-2 yr -1 in 2000. Atlantic sea scallops Placopecten magellanicus and green sea urchins Strongylocentrotus droebachiensis dominated production at the recovering site. The community production:biomass ratio decreased over time at the recovering site as the sea scallop population matured. At the deep sites, production remained significantly higher at undisturbed sites (174 to 256 kcal m-2 yr-1) than at disturbed sites (30 to 52 kcal m -2 yr-1). The soft-bodied tube-building polychaete Thelepus cincinnatus dominated production at the undisturbed site, while hard-shelled bivalve molluscs Astarte spp. and P. magellanicus were prevalent at the disturbed site. Mobile fishing gear disturbance has a conspicuous effect on benthic megafaunal production in this hard-bottom habitat. Cessation of mobile fishing has resulted in a marked increase in benthic megafaunal production. These findings should help fishery managers to gauge the costs and benefits of management tools such as area closures and low-impact fishing gears.

Large-scale patterns of benthic marine communities in the Brazilian Province.

PubMed

Aued, Anaide W; Smith, Franz; Quimbayo, Juan P; Cândido, Davi V; Longo, Guilherme O; Ferreira, Carlos E L; Witman, Jon D; Floeter, Sergio R; Segal, Bárbara

2018-01-01

As marine ecosystems are influenced by global and regional processes, standardized information on community structure has become crucial for assessing broad-scale responses to natural and anthropogenic disturbances. Extensive biogeographic provinces, such as the Brazilian Province in the southwest Atlantic, present numerous theoretical and methodological challenges for understanding community patterns on a macroecological scale. In particular, the Brazilian Province is composed of a complex system of heterogeneous reefs and a few offshore islands, with contrasting histories and geophysical-chemical environments. Despite the large extent of the Brazilian Province (almost 8,000 kilometers), most studies of shallow benthic communities are qualitative surveys and/or have been geographically restricted. We quantified community structure of shallow reef habitats from 0° to 27°S latitude using a standard photographic quadrat technique. Percent cover data indicated that benthic communities of Brazilian reefs were dominated by algal turfs and frondose macroalgae, with low percent cover of reef-building corals. Community composition differed significantly among localities, mostly because of their macroalgal abundance, despite reef type or geographic region, with no evident latitudinal pattern. Benthic diversity was lower in the tropics, contrary to the general latitudinal diversity gradient pattern. Richness peaked at mid-latitudes, between 20°S to 23°S, where it was ~3.5-fold higher than localities with the lowest richness. This study provides the first large-scale description of benthic communities along the southwestern Atlantic, providing a baseline for macroecological comparisons and evaluation of future impacts. Moreover, the new understanding of richness distribution along Brazilian reefs will contribute to conservation planning efforts, such as management strategies and the spatial prioritization for the creation of new marine protected areas.

Large-scale patterns of benthic marine communities in the Brazilian Province

PubMed Central

Smith, Franz; Quimbayo, Juan P.; Cândido, Davi V.; Longo, Guilherme O.; Ferreira, Carlos E. L.; Witman, Jon D.; Floeter, Sergio R.; Segal, Bárbara

2018-01-01

As marine ecosystems are influenced by global and regional processes, standardized information on community structure has become crucial for assessing broad-scale responses to natural and anthropogenic disturbances. Extensive biogeographic provinces, such as the Brazilian Province in the southwest Atlantic, present numerous theoretical and methodological challenges for understanding community patterns on a macroecological scale. In particular, the Brazilian Province is composed of a complex system of heterogeneous reefs and a few offshore islands, with contrasting histories and geophysical-chemical environments. Despite the large extent of the Brazilian Province (almost 8,000 kilometers), most studies of shallow benthic communities are qualitative surveys and/or have been geographically restricted. We quantified community structure of shallow reef habitats from 0° to 27°S latitude using a standard photographic quadrat technique. Percent cover data indicated that benthic communities of Brazilian reefs were dominated by algal turfs and frondose macroalgae, with low percent cover of reef-building corals. Community composition differed significantly among localities, mostly because of their macroalgal abundance, despite reef type or geographic region, with no evident latitudinal pattern. Benthic diversity was lower in the tropics, contrary to the general latitudinal diversity gradient pattern. Richness peaked at mid-latitudes, between 20°S to 23°S, where it was ~3.5-fold higher than localities with the lowest richness. This study provides the first large-scale description of benthic communities along the southwestern Atlantic, providing a baseline for macroecological comparisons and evaluation of future impacts. Moreover, the new understanding of richness distribution along Brazilian reefs will contribute to conservation planning efforts, such as management strategies and the spatial prioritization for the creation of new marine protected areas. PMID:29883496

Benthic Macroinvertebrate Assemblages and Environmental Correlates in Springs of the Ridge and Valley Province

EPA Science Inventory

Springs are unique features in the landscape that provide important habitat for benthic invertebrates, yet there are few studies characterizing the distribution of benthic macro invertebrates in springs. Benthic macroinvertebrate and water quality data were collected at 35 spring...

Nitrogen and organic carbon cycling processes in tidal marshes and shallow estuarine habitats

NASA Astrophysics Data System (ADS)

Bergamaschi, B. A.; Downing, B. D.; Pellerin, B. A.; Kraus, T. E. C.; Fleck, J.; Fujii, R.

2016-02-01

Tidal wetlands and shallow water habitats can be sites of high aquatic productivity, and they have the potential of exchanging this newly produced organic carbon with adjacent deeper habitats. Indeed, export of organic carbon from wetlands and shallow water habitats to pelagic food webs is one of the primary ecosystem functions targeted in tidal wetland restorations. Alternatively, wetlands and shallow water habitats can function as retention areas for nutrients due to the nutrient demand of emergent macrophytes and denitrification in anoxic zones. They can also remove phytoplankton and non-algal particles from the aquatic food webs because the shallower waters can result in higher rates of benthic grazing and higher settling due to lower water velocities. We conducted studies in wetland and channel sites in the San Francisco estuary (USA) to investigate the dynamics of nutrients and carbon production at a variety of temporal scales. We collected continuous time series of nutrients, oxygen, chlorophyll and pH in conjunction with continuous acoustic measurement of water velocity and discharge to provide mass controls and used simple biogeochemical models to assess rates. We found a high degree of temporal variability in individual systems, corresponding to, for example, changes in nutrient supply, water level, light level, wind, wind direction, and other physical factors. There was also large variability among the different systems, probably due to differences in flows and geomorphic features. We compare the aquatic productivity of theses environments and speculate as to the formative elements of each. Our findings demonstrate the complex interaction between physical, chemical, and biological factors that determine the type of production and degree of export from tidal wetlands and shallow water habitats, suggesting that a clearer picture of these processes is important for guiding future large scale restoration efforts.

Modelling temporal and spatial dynamics of benthic fauna in North-West-European shelf seas

NASA Astrophysics Data System (ADS)

Lessin, Gennadi; Bruggeman, Jorn; Artioli, Yuri; Butenschön, Momme; Blackford, Jerry

2017-04-01

Benthic zones of shallow shelf seas receive high amounts of organic material. Physical processes such as resuspension, as well as complex transformations mediated by diverse faunal and microbial communities, define fate of this material, which can be returned to the water column, reworked within sediments or ultimately buried. In recent years, numerical models of various complexity and serving different goals have been developed and applied in order to better understand and predict dynamics of benthic processes. ERSEM includes explicit parameterisations of several groups of benthic biota, which makes it particularly applicable for studies of benthic biodiversity, biological interactions within sediments and benthic-pelagic coupling. To assess model skill in reproducing temporal (inter-annual and seasonal) dynamics of major benthic macrofaunal groups, 1D model simulation results were compared with data from the Western Channel Observatory (WCO) benthic survey. The benthic model was forced with organic matter deposition rates inferred from observed phytoplankton abundance and model parameters were subsequently recalibrated. Based on model results and WCO data comparison, deposit-feeders exert clear seasonal variability, while for suspension-feeders inter-annual variability is more pronounced. Spatial distribution of benthic fauna was investigated using results of a full-scale NEMO-ERSEM hindcast simulation of the North-West European Shelf Seas area, covering the period of 1981-2014. Results suggest close relationship between spatial distribution of biomass of benthic faunal functional groups in relation to bathymetry, hydrodynamic conditions and organic matter supply. Our work highlights that it is feasible to construct, implement and validate models that explicitly include functional groups of benthic macrofauna. Moreover, the modelling approach delivers detailed information on benthic biogeochemistry and food-web at spatial and temporal scales that are unavailable through other sources but highly relevant to marine management, planning and policy.

Variation of telencephalon morphology of the threespine stickleback (Gasterosteus aculeatus) in relation to inferred ecology.

PubMed

Park, Peter J; Bell, M A

2010-06-01

We tested the hypothesis that increased telencephalon size has evolved in threespine stickleback fish (Gasterosteus aculeatus) from structurally complex habitats using field-caught samples from one sea-run (ancestral) and 18 ecologically diverse freshwater (descendant) populations. Freshwater habitats ranged from shallow, structurally complex lakes with benthic-foraging stickleback (benthics), to deeper, structurally simple lakes in which stickleback depend more heavily on plankton for prey (generalists). Contrary to our expectations, benthics had smaller telencephala than generalists, but the shape of the telencephalon of the sea-run and benthic populations were more convex laterally. Convex telencephalon shape may indicate enlargement of the dorsolateral region, which is homologous with the tetrapod hippocampus. Telencephalon morphology is also sexually dimorphic, with larger, less convex telencephala in males. Freshwater stickleback from structurally complex habitats have retained the ancestral telencephalon morphology, but populations that feed more in open habitats on plankton have evolved larger, laterally concave telencephala.

Microbenthic community structure and trophic status of sediments in the Mar Piccolo of Taranto (Mediterranean, Ionian Sea).

PubMed

Rubino, F; Cibic, T; Belmonte, M; Rogelja, M

2016-07-01

This study aimed to assess the benthic ecosystem trophic status in a heavily polluted marine area and the response of the microbenthic community to multiple and diffuse anthropogenic impacts, integrating information coming from the active and resting (plankton's cysts) components of microbenthos. Two sampling campaigns were carried out in the period 2013-2014 and four sampling sites at different levels of industrial contamination were chosen within the first and second inlet of the Mar Piccolo of Taranto. The chemical contamination affected to a higher extent the active microbenthos than the resting one. In the central part of the first inlet, characterised by more marine features, thrives a very rich and biodiverse microbenthic community. In contrast, at the polluted site near the military navy arsenal, extremely low densities (9576 ± 1732 cells cm(-3)) were observed for active microbenthos, but not for the resting community. Here, the high level of contamination selected for tychopelagic diatom species, i.e., thriving just above the surface sediments, while the other life forms died or moved away. Following the adoption of a 10 μm mesh, for the first time, resting spores produced by small diatoms of the genus Chaetoceros were found. Our results further indicate that although the Mar Piccolo is very shallow, the benthic system is scarcely productive, likely as a consequence of the accumulated contaminants in the surface sediments that probably interfere with the proper functioning of the benthic ecosystem.

Macrobenthic patterns at the shallow marine waters in the caldera of the active volcano of Deception Island, Antarctica

NASA Astrophysics Data System (ADS)

Angulo-Preckler, Carlos; Figuerola, Blanca; Núñez-Pons, Laura; Moles, Juan; Martín-Martín, Rafael; Rull-Lluch, Jordi; Gómez-Garreta, Amelia; Avila, Conxita

2018-04-01

Deception Island is an active volcano located at the southern end of the South Shetland Archipelago, in the Antarctic Ocean. After the last eruption in 1970, benthic recolonization took place within the bay, with echinoderms being the dominant epifauna (e.g., the ophiuroid Ophionotus victoriae, the echinoid Sterechinus neumayeri and the sea star Odontaster validus), together with dense infaunal communities (mostly composed by oligochaetes, polychaetes, and bivalves). Here, we aim to describe the actual status of the marine benthic ecosystems inhabiting the shallow subtidal areas of this volcanic island. Benthic species were qualitatively scored as presence versus absence, considering the different sampling effort between localities done over the years. A total of 139 species of macroorganisms, belonging to 16 phyla were found, including fauna and flora, increasing the species richness values previously reported in all sites surveyed within the volcano caldera. Moreover, a dramatic increase in biodiversity was found towards the entrance of the bay. We suggest, however, that recolonization from external waters may not be the only reason for this pattern. In fact, sediment flux rates and substrate instability are common disturbances within the bay, probably being among the major factors determining benthic community assemblages. These processes probably favour deposit feeding communities at the innermost locations of the bay. This study provides a remarkably increased and updated species inventory from previous reports, altogether with a description of the main communities inhabiting the bay and the abiotic factors regulating this, mainly the bottom type.

Summit-to-sea mapping and change detection using satellite imagery: tools for conservation and management of coral reefs.

PubMed

Shapiro, A C; Rohmann, S O

2005-05-01

Continuous summit-to-sea maps showing both land features and shallow-water coral reefs have been completed in Puerto Rico and the U.S. Virgin Islands, using circa 2000 Landsat 7 Enhanced Thematic Mapper (ETM+) Imagery. Continuous land/sea terrain was mapped by merging Digital Elevation Models (DEM) with satellite-derived bathymetry. Benthic habitat characterizations were created by unsupervised classifications of Landsat imagery clustered using field data, and produced maps with an estimated overall accuracy of>75% (Tau coefficient >0.65). These were merged with Geocover-LC (land use/land cover) data to create continuous land/ sea cover maps. Image pairs from different dates were analyzed using Principle Components Analysis (PCA) in order to detect areas of change in the marine environment over two different time intervals: 2000 to 2001, and 1991 to 2003. This activity demonstrates the capabilities of Landsat imagery to produce continuous summit-to-sea maps, as well as detect certain changes in the shallow-water marine environment, providing a valuable tool for efficient coastal zone monitoring and effective management and conservation.

Effects of pulse and press drying disturbance on benthic stream communities

USGS Publications Warehouse

Lynch, Dustin T.; Magoulick, Daniel D.

2016-01-01

Natural disturbance is an integral component of most ecosystems and occurs in 3 different forms: pulse, press, and ramp. In lotic ecosystems, seasonal drought is a major form of disturbance, particularly in intermittent headwater streams, which often are reduced to pools that serve as refuges for biota. We used simulated intermittent stream pools to compare the effects of control, pulse, and press drying on growth and survival in 3 fish species (Lepomis megalotis, Campostoma anomalum, and Etheostoma spectabile) commonly found together in drought-prone streams in the Ozark Highlands, USA. We also compared effects on benthic community structure, including periphyton and chironomid density and sediment in deep (permanently watered) and shallow (intermittently dewatered) habitat. Only one species, L. megalotis, showed a significant reduction in length and mass growth in press drying compared with control treatments. Drying and type of drying had no effect on survival of any fish species. Drying and type of drying had strong overall effects on periphyton growth in shallow habitats, where ash-free dry mass decreased and the autotrophic index (the ratio of chlorophyll a to total biomass) increased significantly in drying relative to control and in press relative to pulse treatments. Drying negatively affected sediment accumulation in shallow habitat and chironomid density in deep habitat. Drying in intermittent streams has species-dependent effects on fish growth and benthic structure, and pulse and press drying differ in their effects on periphyton in these systems. These effects may have important consequences in seasonally drying streams as anthropogenic influence on stream drying increases.

Deep divers in shallow seas: Southern elephant seals on the Patagonian shelf

NASA Astrophysics Data System (ADS)

Campagna, Claudio; Piola, Alberto R.; Marin, Maria Rosa; Lewis, Mirtha; Zajaczkovski, Uriel; Fernández, Teresita

2007-10-01

Elephant seals are wide-ranging, pelagic, deep-diving (average of 400-600 m) predators that typically travel to open waters and continental shelf edges thousands of kilometers from their land breeding colonies. We report a less common pattern of foraging in the shallow waters of a continental shelf. Southern elephant seals, Mirounga leonina, that breed at Península Valdés (Argentina), face an extended (˜1,000,000 km 2; 400-700 km-wide, depending on track), shallow (<150 m) and seasonally productive plateau, the Patagonian shelf. Adults of both sexes usually cross it in rapid transit to other potential foraging grounds on the shelf edge or in the Argentine Basin, but 2-4 year-old juveniles spread over the plateau and spent months in shallow waters. This behavior was recorded for 9 seals (5 males and 4 females) of 23 satellite-tracked juveniles (springs of 2004 and 2005) and for 2 subadult males studied in previous seasons. Trips included travel trajectories and time spent in areas where swim speed decreased, suggesting foraging. Preferred locations of juvenile females were in the proximity of the shelf break, where stratified waters had relatively high phytoplankton concentrations, but young and subadult males used the relatively cold (7-8 °C), low-salinity (˜33.3) mid-shelf waters, with depths of 105-120 m and a poorly stratified water column. Three of the latter seals, instrumented with time-depth recorders, showed dives compatible with benthic feeding and no diel pattern of depths distribution. Regions of the mid-shelf were used in different seasons and were associated with low chlorophyll- a concentration at the time of the visit, suggesting that surface productivity does not overlap with putative quality habitat for benthic foragers. Benthic diving on the shallow mid-shelf would be a resource partitioning strategy advantageous for young males prior to greater energetic demands of a high growth rate and a large body size. Later in life, the more predictable, bathymetry-forced, shelf-break front may offer the food resources that explain the uninterrupted increase of this population over several decades.

Long-lived groupers require structurally stable reefs in the face of repeated climate change disturbances

NASA Astrophysics Data System (ADS)

Karkarey, R.; Kelkar, N.; Lobo, A. Savio; Alcoverro, T.; Arthur, R.

2014-06-01

Benthic recovery from climate-related disturbances does not always warrant a commensurate functional recovery for reef-associated fish communities. Here, we examine the distribution of benthic groupers (family Serranidae) in coral reef communities from the Lakshadweep archipelago (Arabian Sea) in response to structural complexity and long-term habitat stability. These coral reefs that have been subject to two major El Niño Southern Oscillation-related coral bleaching events in the last decades (1998 and 2010). First, we employ a long-term (12-yr) benthic-monitoring dataset to track habitat structural stability at twelve reef sites in the archipelago. Structural stability of reefs was strongly driven by exposure to monsoon storms and depth, which made deeper and more sheltered reefs on the eastern aspect more stable than the more exposed (western) and shallower reefs. We surveyed groupers (species richness, abundance, biomass) in 60 sites across the entire archipelago, representing both exposures and depths. Sites were selected along a gradient of structural complexity from very low to high. Grouper biomass appeared to vary with habitat stability with significant differences between depth and exposure; sheltered deep reefs had a higher grouper biomass than either sheltered shallow or exposed (deep and shallow) reefs. Species richness and abundance showed similar (though not significant) trends. More interestingly, average grouper biomass increased exponentially with structural complexity, but only at the sheltered deep (high stability) sites, despite the availability of recovered structure at exposed deep and shallow sites (lower-stability sites). This trend was especially pronounced for long-lived groupers (life span >10 yrs). These results suggest that long-lived groupers may prefer temporally stable reefs, independent of the local availability of habitat structure. In reefs subject to repeated disturbances, the presence of structurally stable reefs may be critical as refuges for functionally important, long-lived species like groupers.

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore.

PubMed

Guest, J R; Tun, K; Low, J; Vergés, A; Marzinelli, E M; Campbell, A H; Bauman, A G; Feary, D A; Chou, L M; Steinberg, P D

2016-11-08

Coral cover on reefs is declining globally due to coastal development, overfishing and climate change. Reefs isolated from direct human influence can recover from natural acute disturbances, but little is known about long term recovery of reefs experiencing chronic human disturbances. Here we investigate responses to acute bleaching disturbances on turbid reefs off Singapore, at two depths over a period of 27 years. Coral cover declined and there were marked changes in coral and benthic community structure during the first decade of monitoring at both depths. At shallower reef crest sites (3-4 m), benthic community structure recovered towards pre-disturbance states within a decade. In contrast, there was a net decline in coral cover and continuing shifts in community structure at deeper reef slope sites (6-7 m). There was no evidence of phase shifts to macroalgal dominance but coral habitats at deeper sites were replaced by unstable substrata such as fine sediments and rubble. The persistence of coral dominance at chronically disturbed shallow sites is likely due to an abundance of coral taxa which are tolerant to environmental stress. In addition, high turbidity may interact antagonistically with other disturbances to reduce the impact of thermal stress and limit macroalgal growth rates.

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore

PubMed Central

Guest, J. R.; Tun, K.; Low, J.; Vergés, A.; Marzinelli, E. M.; Campbell, A. H.; Bauman, A. G.; Feary, D. A.; Chou, L. M.; Steinberg, P. D.

2016-01-01

Coral cover on reefs is declining globally due to coastal development, overfishing and climate change. Reefs isolated from direct human influence can recover from natural acute disturbances, but little is known about long term recovery of reefs experiencing chronic human disturbances. Here we investigate responses to acute bleaching disturbances on turbid reefs off Singapore, at two depths over a period of 27 years. Coral cover declined and there were marked changes in coral and benthic community structure during the first decade of monitoring at both depths. At shallower reef crest sites (3–4 m), benthic community structure recovered towards pre-disturbance states within a decade. In contrast, there was a net decline in coral cover and continuing shifts in community structure at deeper reef slope sites (6–7 m). There was no evidence of phase shifts to macroalgal dominance but coral habitats at deeper sites were replaced by unstable substrata such as fine sediments and rubble. The persistence of coral dominance at chronically disturbed shallow sites is likely due to an abundance of coral taxa which are tolerant to environmental stress. In addition, high turbidity may interact antagonistically with other disturbances to reduce the impact of thermal stress and limit macroalgal growth rates. PMID:27824083

Disturbance of Shallow Marine Soft-Bottom Environments and Megabenthos Assemblages by a Huge Tsunami Induced by the 2011 M9.0 Tohoku-Oki Earthquake

PubMed Central

Seike, Koji; Shirai, Kotaro; Kogure, Yukihisa

2013-01-01

Huge tsunami waves associated with megathrust earthquakes have a severe impact on shallow marine ecosystems. We investigated the impact of a tsunami generated by the 2011 M9.0 Tohoku-Oki earthquake on the seafloor and large benthic animals in muddy and sandy ria coasts (Otsuchi and Funakoshi bays) in northeastern Japan. We conducted underwater field surveys using scuba equipment in water depths of <20 m before the tsunami (September 2010) and after the tsunami (September 2011 and September 2012). During the study period, episodic changes in topography and grain-size composition occurred on the seafloor of the study area. Megabenthos sampling revealed a distinct pattern of distribution succession for each benthic species. For example, the protobranch bivalve Yoldia notabilis (Bivalvia: Nuculanidae) and the heterodont bivalve Felaniella usta (Bivalvia: Ungulinidae) disappeared after the tsunami event, whereas the distribution of the venus clam Gomphina melanaegis (Bivalvia: Veneridae) remained unchanged. In addition, the patterns of succession for a single species, such as the giant button top shell Umbonium costatum (Gastropoda: Trochidae) and the heart urchin Echinocardium cordatum (Echinoidea: Loveniidae), varied between the two bays studied. Our data also show that reestablishment of some benthic animal populations began within 18 months of the tsunami disturbance. PMID:23762365

Disturbance of shallow marine soft-bottom environments and megabenthos assemblages by a huge tsunami induced by the 2011 M9.0 Tohoku-Oki earthquake.

PubMed

Seike, Koji; Shirai, Kotaro; Kogure, Yukihisa

2013-01-01

Huge tsunami waves associated with megathrust earthquakes have a severe impact on shallow marine ecosystems. We investigated the impact of a tsunami generated by the 2011 M9.0 Tohoku-Oki earthquake on the seafloor and large benthic animals in muddy and sandy ria coasts (Otsuchi and Funakoshi bays) in northeastern Japan. We conducted underwater field surveys using scuba equipment in water depths of <20 m before the tsunami (September 2010) and after the tsunami (September 2011 and September 2012). During the study period, episodic changes in topography and grain-size composition occurred on the seafloor of the study area. Megabenthos sampling revealed a distinct pattern of distribution succession for each benthic species. For example, the protobranch bivalve Yoldia notabilis (Bivalvia: Nuculanidae) and the heterodont bivalve Felaniella usta (Bivalvia: Ungulinidae) disappeared after the tsunami event, whereas the distribution of the venus clam Gomphina melanaegis (Bivalvia: Veneridae) remained unchanged. In addition, the patterns of succession for a single species, such as the giant button top shell Umbonium costatum (Gastropoda: Trochidae) and the heart urchin Echinocardium cordatum (Echinoidea: Loveniidae), varied between the two bays studied. Our data also show that reestablishment of some benthic animal populations began within 18 months of the tsunami disturbance.

Linking Environmental Forcing and Trophic Supply to Benthic Communities in the Vercelli Seamount Area (Tyrrhenian Sea)

PubMed Central

Covazzi Harriague, Anabella; Bavestrello, Giorgio; Bo, Marzia; Borghini, Mireno; Castellano, Michela; Majorana, Margherita; Massa, Francesco; Montella, Alessandro; Povero, Paolo; Misic, Cristina

2014-01-01

Seamounts and their influence on the surrounding environment are currently being extensively debated but, surprisingly, scant information is available for the Mediterranean area. Furthermore, although the deep Tyrrhenian Sea is characterised by a complex bottom morphology and peculiar hydrodynamic features, which would suggest a variable influence on the benthic domain, few studies have been carried out there, especially for soft-bottom macrofaunal assemblages. In order to fill this gap, the structure of the meio-and macrofaunal assemblages of the Vercelli Seamount and the surrounding deep area (northern Tyrrhenian Sea – western Mediterranean) were studied in relation to environmental features. Sediment was collected with a box-corer from the seamount summit and flanks and at two far-field sites in spring 2009, in order to analyse the metazoan communities, the sediment texture and the sedimentary organic matter. At the summit station, the heterogeneity of the habitat, the shallowness of the site and the higher trophic supply (water column phytopigments and macroalgal detritus, for instance) supported a very rich macrofaunal community, with high abundance, biomass and diversity. In fact, its trophic features resembled those observed in coastal environments next to seagrass meadows. At the flank and far-field stations, sediment heterogeneity and depth especially influenced the meiofaunal distribution. From a trophic point of view, the low content of the valuable sedimentary proteins that was found confirmed the general oligotrophy of the Tyrrhenian Sea, and exerted a limiting influence on the abundance and biomass of the assemblages. In this scenario, the rather refractory sedimentary carbohydrates became a food source for metazoans, which increased their abundance and biomass at the stations where the hydrolytic-enzyme-mediated turnover of carbohydrates was faster, highlighting high lability. PMID:25343621

A Semianalytical Ocean Color Inversion Algorithm with Explicit Water Column Depth and Substrate Reflectance Parameterization

NASA Technical Reports Server (NTRS)

Mckinna, Lachlan I. W.; Werdell, P. Jeremy; Fearns, Peter R. C.; Weeks, Scarla J.; Reichstetter, Martina; Franz, Bryan A.; Shea, Donald M.; Feldman, Gene C.

2015-01-01

A semianalytical ocean color inversion algorithm was developed for improving retrievals of inherent optical properties (IOPs) in optically shallow waters. In clear, geometrically shallow waters, light reflected off the seafloor can contribute to the water-leaving radiance signal. This can have a confounding effect on ocean color algorithms developed for optically deep waters, leading to an overestimation of IOPs. The algorithm described here, the Shallow Water Inversion Model (SWIM), uses pre-existing knowledge of bathymetry and benthic substrate brightness to account for optically shallow effects. SWIM was incorporated into the NASA Ocean Biology Processing Group's L2GEN code and tested in waters of the Great Barrier Reef, Australia, using the Moderate Resolution Imaging Spectroradiometer (MODIS) Aqua time series (2002-2013). SWIM-derived values of the total non-water absorption coefficient at 443 nm, at(443), the particulate backscattering coefficient at 443 nm, bbp(443), and the diffuse attenuation coefficient at 488 nm, Kd(488), were compared with values derived using the Generalized Inherent Optical Properties algorithm (GIOP) and the Quasi-Analytical Algorithm (QAA). The results indicated that in clear, optically shallow waters SWIM-derived values of at(443), bbp(443), and Kd(443) were realistically lower than values derived using GIOP and QAA, in agreement with radiative transfer modeling. This signified that the benthic reflectance correction was performing as expected. However, in more optically complex waters, SWIM had difficulty converging to a solution, a likely consequence of internal IOP parameterizations. Whilst a comprehensive study of the SWIM algorithm's behavior was conducted, further work is needed to validate the algorithm using in situ data.

Late Oligocene-Early Miocene larger benthic foraminifera from the mixed siliciclastic-carbonate and reefal strata of Kharabeh Sanji stratigraphic section, NW Iran

NASA Astrophysics Data System (ADS)

Hosseinzadeh, R.

2012-04-01

The marine Oligo-Miocene sediments of the Qom Formation at Kharabeh Sanji section west Uromieh consisting of mixed siliciclastic-carbonates changing to reefal strata were studied in detail to establish a high resolution biostratigraphic zonal scheme. Contineous distribution of larger benthic foraminifera (mainly miogypsinids) allowed us to correlate the identified taxa with the shallow benthic zonation (SBZ) already introduced for European sequences and to ascribe detailed age to the study section based on the determined biozones. The identified fauna include the genera Miogypsinodes, Miogypsina, Neorotalia, Nephrolepidina, Eulepidina and Spiroclypeus. The foraminifereal assemblage resemble to the fauna described from European basins characterizing the SBZ 23 to SBZ 25 zones representing a time interval from the Late Chattian to Burdigalian.

Maestrichtian benthic foraminifers from Ocean Point, North Slope, Alaska ( USA).

USGS Publications Warehouse

McDougall, K.

1987-01-01

Previous studies of fauna and flora from Ocean Point, Alaska, have suggested ages ranging from Campanian to early Eocene and that these assemblages are either highly endemic or commonplace. I demonstrate that the moderately abundant benthic foraminifers constitute early Maestrichtian boreal assemblages common to Canada and northern Europe. Paleoenvironmental analysis indicates that deposition took place in outer neritic settings (50 to 150m). The Ocean Point benthic foraminiferal assemblages contain species that migrated from the US Gulf Coast, North American Interior and Europe during the Campanian, and from Europe during the Maestrichtian. These faunal affinities suggest that seaways connected the Arctic to the North American Interior and Atlantic during the Campanian and that a shallow seaway connected the Arctic to the Atlantic during the early Maestrichtian. - from Author

Latest Paleocene benthic extinction event on the southern Tethyan shelf (Egypt): Foraminiferal stable isotopic (δ13C, δ18O) records

NASA Astrophysics Data System (ADS)

Schmitz, B.; Speijer, R. P.; Aubry, M.-P.

1996-04-01

The dramatic global extinction of 35% 50% of benthic foraminifera species in the deep sea in the latest Paleocene and associated negative excursions in δ13C and δ18O may be related to spreading of warm, saline bottom water from subtropical Tethyan shallow regions over the sea floor worldwide. Our study of neritic sections in Egypt shows that in the southern shallow Tethys, a prominent long-term change in bottom-water chemistry, sedimentation, and benthic foraminifera fauna was initiated at the time when the deep-sea benthic extinction event (BEE) took place. Bottom-water δ13C values on the Tethyan shelf show a sudden 3.0‰ negative shift at this event; however, contrary to the deep sea, in which the δ13C excursion was of short duration, Tethyan δ13C values did not fully return to preboundary values, but remained depressed by ˜1.5‰ for at least 1 m.y. The δ13C values at the Egyptian shelf during the BEE are much lower than would be expected if this was a source region for global deep water. The δ18O values indicate no significant change in bottom-water salinity or temperature at the BEE. The long-lasting environmental changes that began on the Egyptian shelf at the BEE may be related to, for example, gateway reorganization along the Tethyan seaway. Paleogeographic changes possibly also triggered a change in the loci of global deep-water formation; however, these loci must be sought in another part of the Tethys.

Geological and biological heterogeneity of the Aleutian margin (1965-4822 m)

NASA Astrophysics Data System (ADS)

Rathburn, A. E.; Levin, L. A.; Tryon, M.; Gieskes, J. M.; Martin, J. B.; Pérez, M. E.; Fodrie, F. J.; Neira, C.; Fryer, G. J.; Mendoza, G.; McMillan, P. A.; Kluesner, J.; Adamic, J.; Ziebis, W.

2009-01-01

Geological, biological and biogeochemical characterization of the previously unexplored margin off Unimak Island, Alaska between 1965 and 4822 m water depth was conducted to examine: (1) the geological processes that shaped the margin, (2) the linkages between depth, geomorphology and environmental disturbance in structuring benthic communities of varying size classes and (3) the existence, composition and nutritional sources of methane seep biota on this margin. The study area was mapped and sampled using multibeam sonar, a remotely operated vehicle (ROV) and a towed camera system. Our results provide the first characterization of the Aleutian margin mid and lower slope benthic communities (microbiota, foraminifera, macrofauna and megafauna), recognizing diverse habitats in a variety of settings. Our investigations also revealed that the geologic feature known as the “Ugamak Slide” is not a slide at all, and could not have resulted from a large 1946 earthquake. However, sediment disturbance appears to be a pervasive feature of this margin. We speculate that the deep-sea occurrence of high densities of Elphidium, typically a shallow-water foraminiferan, results from the influence of sediment redeposition from shallower habitats. Strong representation of cumacean, amphipod and tanaid crustaceans among the Unimak macrofauna may also reflect sediment instability. Although some faunal abundances decline with depth, habitat heterogeneity and disturbance generated by canyons and methane seepage appear to influence abundances of biota in ways that supercede any clear depth gradient in organic matter input. Measures of sediment organic matter and pigment content as well as C and N isotopic signatures were highly heterogeneous, although the availability of organic matter and the abundance of microorganisms in the upper sediment (1-5 cm) were positively correlated. We report the first methane seep on the Aleutian slope in the Unimak region (3263-3285 m), comprised of clam bed, pogonophoran field and carbonate habitats. Seep foraminiferal assemblages were dominated by agglutinated taxa, except for habitats above the seafloor on pogonophoran tubes. Numerous infaunal taxa in clam bed and pogonophoran field sediments and deep-sea “reef” cnidarians (e.g., corals and hydroids) residing on rocks near seepage sites exhibited light organic δ 13C signatures indicative of chemosynthetic nutritional sources. The extensive geological, biogeochemical and biological heterogeneity as well as disturbance features observed on the Aleutian slope provide an attractive explanation for the exceptionally high biodiversity characteristic of the world’s continental margins.

Along-Track Reef Imaging System (ATRIS)

USGS Publications Warehouse

Brock, John; Zawada, Dave

2006-01-01

"Along-Track Reef Imaging System (ATRIS)" describes the U.S. Geological Survey's Along-Track Reef Imaging System, a boat-based sensor package for rapidly mapping shallow water benthic environments. ATRIS acquires high resolution, color digital images that are accurately geo-located in real-time.

BENTHOS AS THE BASIS FOR ARCTIC FOOD WEBS

EPA Science Inventory

Plankton have traditionally been viewed as the basis for limnetic food webs, with zooplankton acting as a gateway for energy passing between phytoplanktonic primary producers and fish. Often, benthic production is considered to be important primarily in shallow systems or as a su...

Influence of variable water depth and turbidity on microalgae production in a shallow estuarine lake system - A modelling study

NASA Astrophysics Data System (ADS)

Tirok, Katrin; Scharler, Ursula M.

2014-06-01

Strongly varying water levels and turbidities are typical characteristics of the large shallow estuarine lake system of St. Lucia, one of the largest on the African continent. This theoretical study investigated the combined effects of variable water depth and turbidity on seasonal pelagic and benthic microalgae production using a mathematical model, in order to ascertain productivity levels during variable and extreme conditions. Simulated pelagic and benthic net production varied between 0.3 and 180 g C m-2 year-1 and 0 and 220 g C m-2 year-1, respectively, dependent on depth, turbidity, and variability in turbidity. Although not surprising production and biomass decreased with increasing turbidity and depth. A high variability in turbidity, i.e. an alteration of calm and windy days, could reduce or enhance the seasonal pelagic and benthic production by more than 30% compared to a low variability. The day-to-day variability in wind-induced turbidity therefore influences production in the long term. On the other hand, varying water depth within a year did not significantly influence the seasonal production for turbidities representative of Lake St. Lucia. Reduced lake area and volume as observed during dry periods in Lake St. Lucia did not reduce primary production of the entire system since desiccation resulted in lower water depth and thus increased light availability. This agrees with field observations suggesting little light limitation and high areal microalgal biomass during a period with below average rainfall (2005-2011). Thus, microalgae potentially fulfil their function in the lake food-web even under extreme drought conditions. We believe that these results are of general interest to shallow aquatic ecosystems that are sensitive to drought periods due to either human or natural causes.

Extinction and recolonization of maritime Antarctica in the limpet Nacella concinna (Strebel, 1908) during the last glacial cycle: toward a model of Quaternary biogeography in shallow Antarctic invertebrates.

PubMed

González-Wevar, C A; Saucède, T; Morley, S A; Chown, S L; Poulin, E

2013-10-01

Quaternary glaciations in Antarctica drastically modified geographical ranges and population sizes of marine benthic invertebrates and thus affected the amount and distribution of intraspecific genetic variation. Here, we present new genetic information in the Antarctic limpet Nacella concinna, a dominant Antarctic benthic species along shallow ice-free rocky ecosystems. We examined the patterns of genetic diversity and structure in this broadcast spawner along maritime Antarctica and from the peri-Antarctic island of South Georgia. Genetic analyses showed that N. concinna represents a single panmictic unit in maritime Antarctic. Low levels of genetic diversity characterized this population; its median-joining haplotype network revealed a typical star-like topology with a short genealogy and a dominant haplotype broadly distributed. As previously reported with nuclear markers, we detected significant genetic differentiation between South Georgia Island and maritime Antarctica populations. Higher levels of genetic diversity, a more expanded genealogy and the presence of more private haplotypes support the hypothesis of glacial persistence in this peri-Antarctic island. Bayesian Skyline plot and mismatch distribution analyses recognized an older demographic history in South Georgia. Approximate Bayesian computations did not support the persistence of N. concinna along maritime Antarctica during the last glacial period, but indicated the resilience of the species in peri-Antarctic refugia (South Georgia Island). We proposed a model of Quaternary Biogeography for Antarctic marine benthic invertebrates with shallow and narrow bathymetric ranges including (i) extinction of maritime Antarctic populations during glacial periods; (ii) persistence of populations in peri-Antarctic refugia; and (iii) recolonization of maritime Antarctica following the deglaciation process. © 2013 John Wiley & Sons Ltd.

Functioning of a Shallow-Water Sediment System during Experimental Warming and Nutrient Enrichment

PubMed Central

Alsterberg, Christian; Sundbäck, Kristina; Hulth, Stefan

2012-01-01

Effects of warming and nutrient enrichment on intact unvegetated shallow-water sediment were investigated for 5 weeks in the autumn under simulated natural field conditions, with a main focus on trophic state and benthic nitrogen cycling. In a flow-through system, sediment was exposed to either seawater at ambient temperature or seawater heated 4°C above ambient, with either natural or nutrient enriched water. Sediment–water fluxes of oxygen and inorganic nutrients, nitrogen mineralization, and denitrification were measured. Warming resulted in an earlier shift to net heterotrophy due to increased community respiration; primary production was not affected by temperature but (slightly) by nutrient enrichment. The heterotrophic state was, however, not further strengthened by warming, but was rather weakened, probably because increased mineralization induced a shortage of labile organic matter. Climate-related warming of seawater during autumn could therefore, in contrast to previous predictions, induce shorter but more intensive heterotrophic periods in shallow-water sediments, followed by longer autotrophic periods. Increased nitrogen mineralization and subsequent effluxes of ammonium during warming suggested a preferential response of organisms driving nitrogen mineralization when compared to sinks of ammonium such as nitrification and algal assimilation. Warming and nutrient enrichment resulted in non-additive effects on nitrogen mineralization and denitrification (synergism), as well as on benthic fluxes of phosphate (antagonism). The mode of interaction appears to be related to the trophic level of the organisms that are the main drivers of the affected processes. Despite the weak response of benthic microalgae to both warming and nutrient enrichment, the assimilation of nitrogen by microalgae was similar in magnitude to rates of nitrogen mineralization. This implies a sustained filter function and retention capacity of nutrients by the sediment. PMID:23240032

The Southern Ocean Benthic Fauna and Climate Change: A Historical Perspective

NASA Astrophysics Data System (ADS)

Clarke, Andrew; Crame, J. Alistair

1992-11-01

Environmental change is the norm and it is likely that, particularly on the geological timescale, the temperature regime experienced by marine organisms has never been stable. These temperature changes vary in timescale from daily, through seasonal variations, to long-term environmental change over tens of millions of years. Whereas physiological work can give information on how individual organisms may react phenotypically to short-term change, the way benthic communities react to long-term change can only be studied from the fossil record. The present benthic marine fauna of the Southern Ocean is rich and diverse, consisting of a mixture of taxa with differing evolutionary histories and biogeographical affinities, suggesting that at no time in the Cenozoic did continental ice sheets extend sufficiently to eradicate all shallow-water faunas around Antarctica at the same time. Nevertheless, certain features do suggest the operation of vicariant processes, and climatic cycles affecting distributional ranges and ice-sheet extension may both have enhanced speciation processes. The overall cooling of southern high-latitude seas since the mid-Eocene has been neither smooth nor steady. Intermittent periods of global warming and the influence of Milankovitch cyclicity is likely to have led to regular pulses of migration in and out of Antarctica. The resultant diversity pump may explain in part the high species richness of some marine taxa in the Southern Ocean. It is difficult to suggest how the existing fauna will react to present global warming. Although it is certain the fauna will change, as all faunas have done throughout evolutionary time, we cannot predict with confidence how it will do so.

Biodiversity of the Deep-Sea Benthic Fauna in the Sangihe-Talaud Region, Indonesia: Observations from the INDEX-SATAL 2010 Expedition

NASA Astrophysics Data System (ADS)

Herrera, S.; Munro, C.; Nganro, N.; Tunnicliffe, V.; Wirasantosa, S.; Sibert, E.; Hammond, S. R.; Bors, E.; Butterfield, D.; Holden, J. F.; Baker, E. T.; Sherrin, J.; Makarim, S.; Troa, R.; Shank, T. M.

2010-12-01

The benthic ecosystems found in the deep-sea promontories of Sangihe Talaud region were explored, between June and August 2010, using the ROV Little Hercules aboard the NOAA ship Okeanos Explorer. The Sangihe-Talaud region is part of the Coral Triangle (CT) an area known for harboring the most biodiverse shallow-water coral reefs in the world. Notwithstanding the significant research efforts that have been undertaken to catalog and protect the biodiversity of the CT prior this expedition, virtually nothing was known about the life inhabiting the deep sea. The high-resolution imagery obtained from the 27 ROV dives revealed remarkably high abundances and diversity of animal species, many of which appear to be novel. On hard bottom substrates, cold-water corals were the dominant sessile macrofauna, in terms of biomass, followed by glass sponges (Hexactinellida) and sea lilies (Crinoidea). The coral taxa observed in this area represent six large orders of cnidarians: antipatharians (black corals), scleractinians (stony corals), zoanthideans (gold corals), alcyonaceans (octocorals), pennatulaceans (sea pens), and anthoathecates (hydrocorals). Most sessile species, independently of their size class or taxonomic affiliation, harbor a wide variety of associated fauna. Brittle stars (Ophiuroidea), squat lobsters (Galatheoidea), shrimp (Caridea), amphipods (Amphipoda), anemones (Actinaria), zanthideans, barnacles (Cirripedia), hydroids (Hydrozoa) and worms (Polychaeta) are the animal groups most commonly found forming these associations. In contrast, soft bottom habitats were dominated by stalked sponges, sea pens, sea cucumbers (Holothuroidea) and brittle stars. Other conspicuous fauna include fish, hermit crabs (Paguridae), urchins (Echinoidea) and octopuses (Cephalopoda). The abundance of habitats generated by the high number of geological and biological features and depth ranges present in the deep coral triangle (e.g., ridges, seamounts, island margins, plains, and rock types), and the complex history of tectonic dynamics of this region are among the likely causes for the high biodiversity found during this mission. Tectonic history and diverse habitats may also be factors that have played a similar role shaping the diversity of shallow water assemblages of the region. Such parallels between the biodiversity of deep and shallow waters will be presented.

BENTHIC-PELAGIC PROCESSES IN PENSACOLA BAY, FL: EFFECTS OF LIGHT ON OXYGEN FLUXES

EPA Science Inventory

Eutrophication caused by excess nutrients can exacerbate hypoxia by increasing bottom water and sediment respiration. However, in shallow sub-tropical estuaries, the euphotic zone often extends below the pycnocline allowing oxygen fluxes in Pensacola Bay, FL, USA. Measurements we...

Selective responses of benthic foraminifera to thermal pollution.

PubMed

Titelboim, Danna; Almogi-Labin, Ahuva; Herut, Barak; Kucera, Michal; Schmidt, Christiane; Hyams-Kaphzan, Orit; Ovadia, Ofer; Abramovich, Sigal

2016-04-15

Persistent thermohaline pollution at a site along the northern coast of Israel, due to power and desalination plants, is used as a natural laboratory to evaluate the effects of rising temperature and salinity levels on benthic foraminifera living in shallow hard-bottom habitats. Biomonitoring of the disturbed area and a control station shows that elevated temperature is a more significant stressor compared to salinity, thus causing a decrease in abundance and richness. Critical temperature thresholds were observed at 30 and 35°C, the latter representing the most thermally tolerant species in the studied area Pararotalia calcariformata, which is the only symbiont-bearing species observed within the core of the heated area. Common species of the shallow hard-bottom habitats including several Lessepsian invaders are almost absent in the most exposed site indicating that excess warming will likely impede the survival of these species that currently benefit from the ongoing warming of the Eastern Mediterranean. Copyright © 2016 Elsevier Ltd. All rights reserved.

Late 20th Century benthic foraminiferal distribution in Central San Francisco Bay, California: Influence of the Trochammina hadai invasion

USGS Publications Warehouse

McGann, Mary L.

2014-01-01

Samples collected from 1965 onward were also compared with those from 1998 to investigate how the distribution of benthic foraminifera in Central Bay has changed over the latter half of the 20th Century, particularly in response to the invasion by Trochammina hadai. In 1998, T. hadai was recovered at 46 of 55 sites in Central Bay, comprising from 0.3 to 97% (mean = 23%) of the foraminiferal fauna. With the species’ affiliation for shallow environments, it is not unexpected that it dominated the fauna of the Shallow Subtidal Biofacies (68-97%, mean = 77%) and was also a significant component of the Intermediate Subtidal Biofacies (7-51%, averaging 28%). In the deeper waters west of Alcatraz Island, the abundance of T. hadai was significantly less (mean = 8%), most likely reflecting allochthonous specimens that were the result of post-mortem transport. A cluster analysis clearly distinguishes pre- and post-invasion biofacies, illustrating how dominant T. hadai has become in Central Bay.

Time scales of change in the San Francisco Bay benthos

USGS Publications Warehouse

Nichols, F.H.; Thompson, J.K.

1985-01-01

Results from multi-year investigations in the San Francisco Bay estuary show that large abundance fluctuations within benthic macroinvertebrate populations reflect both (1) within-year periodicity of reproduction, recruitment, and mortality that is not necessarily coincident with seasonal changes of the environment (e.g., the annual temperature cycle), and (2) aperiodic density changes (often larger than within-year fluctuations) following random perturbations of the environment. Density peaks of the small, short-lived estuarine invertebrates that comprise the vast majority of individuals in the bay's relatively homogeneous benthic community normally occur between spring and autumn depending on the species, in large part a reflection of reproductive periodicity. However, because mild winters permit reproductive activity in some of the common species throughout much of the year, other factors are important to within-year density fluctuations in the community. Seasonally predictable changes in freshwater inflow, wind and tidal mixing, microalgal biomass, and sediment erosion/deposition patterns all contribute to observed seasonal changes in abundance. For example, the commonly observed decline in abundance during winter reflects both short-lived species that die after reproducing and the stress of winter conditions (e.g., inundation by less saline, sediment-laden water and the decline in both planktonic and benthic algal biomass - a direct source of food for the shallow-water benthos). On the other hand, data from several studies suggest that observed 'recruitment' and 'mortality' may in fact be the migration of juveniles and adults to and from study sites. For example, the common amphipod Ampelisca abdita apparently moves from shallow to deep water, or from up-estuary to down-estuary locations, coincident with periods of high river runoff in winter. Growth of individuals within the few studied species populations is also highly seasonal, and appears to be coincident with seasonal increases in the abundance of planktonic and/or benthic microalgae. Two multi-year studies have shown that, in addition to within-year periodicity, major restructuring of the benthic community can occur as a result of anomalous (usually climate-related) perturbations of the benthic habitat. For example, during wet years freshwater-intolerant species disappear from the upper part of the estuary and from shallow areas of the bay. During a two-year drought these same species colonized the extreme upper end of the estuary in large numbers. Other aperiodic perturbations include localized instances of sediment erosion or deposition and algal mat accumulations that greatly depress abundance. Additionally, there is evidence (observations that the clam Macoma balthica establishes large populations only when the amphipod A. abdita is not abundant) that species interactions can contribute greatly to interannual variations. Thus, while community composition may change little over the long term, year-to-year predictability of species abundances is low. ?? 1985 Dr W. Junk Publishers.

Contribution of phytoplankton and benthic microalgae to inner shelf sediments of the north-central Gulf of Mexico

NASA Astrophysics Data System (ADS)

Grippo, M. A.; Fleeger, J. W.; Rabalais, N. N.; Condrey, R.; Carman, K. R.

2010-03-01

Marine sediment may contain both settled phytoplankton and benthic microalgae (BMA). In river-dominated, shallow continental shelf systems, spatial, and temporal heterogeneity in sediment type and water-column characteristics (e.g., turbidity and primary productivity) may promote spatial variation in the relative contribution of these two sources to the sediment organic matter pool available to benthic consumers. Here we use photosynthetic pigment analysis and microscopic examination of sediment microalgae to investigate how the biomass, composition, and degradation state of sediment-associated microalgae vary along the Louisiana (USA) inner shelf, a region strongly influenced by the Mississippi River. Three sandy shoals and surrounding muddy sediments with depths ranging from 4 to 20 m were sampled in April, August, and October 2007. Pigment composition suggested that sediment microalgae were primarily diatoms at all locations. We found no significant differences in sediment chlorophyll a concentrations (8-77 mg m -2) at the shoal and off-shoal stations. Epipelic pennate diatoms (considered indicative of BMA) made up a significantly greater proportion of sediment diatoms at sandy (50-98%) compared to more silty off-shoal stations (16-56%). The percentage of centric diatoms (indicators of settled phytoplankton) in the sediment was highest in August. Sediment total pheopigment concentrations on sandy stations (<20 mg m -2) were significantly lower than concentrations at nearby muddy stations (>40 mg m -2), suggesting differences in sediment microalgal degradation state. These observations suggest that BMA predominate in shallow sandy sediments and that phytodetritus predominates at muddy stations. Our results also suggest that the relative proportion of phytodetritus in the benthos was highest where phytoplankton biomass in the overlying water was greatest, independent of sediment type. The high biomass of BMA found on shoals suggests that benthic primary production on sandy sediments represents a potentially significant local source of sediment microalgal carbon that may be utilized by benthic consumers in continental shelf food webs.

Spatial analyses of benthic habitats to define coral reef ecosystem regions and potential biogeographic boundaries along a latitudinal gradient.

PubMed

Walker, Brian K

2012-01-01

Marine organism diversity typically attenuates latitudinally from tropical to colder climate regimes. Since the distribution of many marine species relates to certain habitats and depth regimes, mapping data provide valuable information in the absence of detailed ecological data that can be used to identify and spatially quantify smaller scale (10 s km) coral reef ecosystem regions and potential physical biogeographic barriers. This study focused on the southeast Florida coast due to a recognized, but understudied, tropical to subtropical biogeographic gradient. GIS spatial analyses were conducted on recent, accurate, shallow-water (0-30 m) benthic habitat maps to identify and quantify specific regions along the coast that were statistically distinct in the number and amount of major benthic habitat types. Habitat type and width were measured for 209 evenly-spaced cross-shelf transects. Evaluation of groupings from a cluster analysis at 75% similarity yielded five distinct regions. The number of benthic habitats and their area, width, distance from shore, distance from each other, and LIDAR depths were calculated in GIS and examined to determine regional statistical differences. The number of benthic habitats decreased with increasing latitude from 9 in the south to 4 in the north and many of the habitat metrics statistically differed between regions. Three potential biogeographic barriers were found at the Boca, Hillsboro, and Biscayne boundaries, where specific shallow-water habitats were absent further north; Middle Reef, Inner Reef, and oceanic seagrass beds respectively. The Bahamas Fault Zone boundary was also noted where changes in coastal morphologies occurred that could relate to subtle ecological changes. The analyses defined regions on a smaller scale more appropriate to regional management decisions, hence strengthening marine conservation planning with an objective, scientific foundation for decision making. They provide a framework for similar regional analyses elsewhere.

Spatial Analyses of Benthic Habitats to Define Coral Reef Ecosystem Regions and Potential Biogeographic Boundaries along a Latitudinal Gradient

PubMed Central

Walker, Brian K.

2012-01-01

Marine organism diversity typically attenuates latitudinally from tropical to colder climate regimes. Since the distribution of many marine species relates to certain habitats and depth regimes, mapping data provide valuable information in the absence of detailed ecological data that can be used to identify and spatially quantify smaller scale (10 s km) coral reef ecosystem regions and potential physical biogeographic barriers. This study focused on the southeast Florida coast due to a recognized, but understudied, tropical to subtropical biogeographic gradient. GIS spatial analyses were conducted on recent, accurate, shallow-water (0–30 m) benthic habitat maps to identify and quantify specific regions along the coast that were statistically distinct in the number and amount of major benthic habitat types. Habitat type and width were measured for 209 evenly-spaced cross-shelf transects. Evaluation of groupings from a cluster analysis at 75% similarity yielded five distinct regions. The number of benthic habitats and their area, width, distance from shore, distance from each other, and LIDAR depths were calculated in GIS and examined to determine regional statistical differences. The number of benthic habitats decreased with increasing latitude from 9 in the south to 4 in the north and many of the habitat metrics statistically differed between regions. Three potential biogeographic barriers were found at the Boca, Hillsboro, and Biscayne boundaries, where specific shallow-water habitats were absent further north; Middle Reef, Inner Reef, and oceanic seagrass beds respectively. The Bahamas Fault Zone boundary was also noted where changes in coastal morphologies occurred that could relate to subtle ecological changes. The analyses defined regions on a smaller scale more appropriate to regional management decisions, hence strengthening marine conservation planning with an objective, scientific foundation for decision making. They provide a framework for similar regional analyses elsewhere. PMID:22276204

Benthic Foraminifers identify the source of displaced sediment from a sediment density flow at 1840 m near the Seafloor Instrument Node of the Monterey Coordinated Canyon Experiment

NASA Astrophysics Data System (ADS)

McGann, M.; Maier, K. L.; Gales, J. A.; Paull, C. K.; Gwiazda, R.; Barry, J.; Carvajal, C.; Clare, M. A.; Cartigny, M.; Chaffey, M. R.; Parsons, D. R.; O'Reilly, T. C.; Rosenberger, K. J.; Wolfson-Schwehr, M.; Simmons, S.; Sumner, E.; Talling, P.; Xu, J.

2017-12-01

Submarine canyons are found along the slopes of most continental margins and turbidity currents are thought to be the primary mechanism responsible for transporting sediment through them to deep-sea fans. The initiation sites of these flows are difficult to locate with any degree of precision from lithology alone. Fortunately, the presence of allochthonous microscopic remains, such as benthic foraminifers, can aid in the identification of the source of the displaced sediments. In Monterey Canyon, offshore California, a Seafloor Instrument Node (SIN) and adjacent mooring in the Coordinated Canyon Experiment indicate that a February 2017 turbidity current reached 1840 m water depth. In April 2017, one push core was obtained on each of four sides of the SIN just outside its frame and six others from 30-100 m away. Each was cut into 1 cm slices, stained with rose Bengal, washed, and analyzed for their microscopic constituents. Material recovered included terrestrial debris (wood, leaves, seeds, highway safety spheres, and volcanic glass) as well as foraminiferal tests. Dead benthic foraminifers from the estuarine (0-10 m), inner shelf (0-50 m), outer shelf (50-150 m), slope break (150 m), upper bathyal (150-500 m), and middle bathyal (500-2000 m) biofacies were present, suggesting a staged progression of sediment downslope from the continental shelf and slope. Living (rose Bengal stained) foraminifers recovered represent estuarine (Ammonia tepida, Elphidium excavatum), inner shelf (Buccella frigida, B. tenerrima, Buliminella elegantissima, Cibicides fletcheri, Nonionella spp., Rotorbinella turbinata), and upper bathyal (Bolivina pacifica, B. spissa, Epistominella exigua, Uvigerina peregrina) species as well as an in-situ middle bathyal biofacies (Bolivina argentea, B. spissa, Buliminella tenuata, Epistominella pacifica, Globobulimina spp., Uvigerina peregrina, U. hispida). The presence of living allochthonous benthic foraminifers from these shallower biofacies suggests the flow that covered portions of the SIN frame and the surrounding area originated in the estuarine to shallow shelf environment. Because the shallow water species were still alive when deposited at 1840 m water depth, the sediment gravity flow was a rapid event that transported sediment down canyon to this deep-marine site.

A model of tephra dispersal from an early Palaeogene shallow submarine Surtseyan-style eruption(s), the Red Bluff Tuff Formation, Chatham Island, New Zealand

NASA Astrophysics Data System (ADS)

Sorrentino, Leonor; Stilwell, Jeffrey D.; Mays, Chris

2014-03-01

The Red Bluff Tuff Formation, an early Palaeogene volcano-sedimentary shallow marine succession from the Chatham Islands (New Zealand), provides a unique framework, in eastern 'Zealandia', to explore tephra dispersal processes associated with ancient small phreatomagmatic explosions (i.e. Surtseyan-style eruptions). Detailed sedimentological mapping, logging and sampling integrated with the results of extensive laboratory analyses (i.e. grain-size, componentry and applied palaeontological methods) elucidated the complex mechanisms of transport and deposition of nine identified resedimented fossiliferous volcaniclastic facies. These facies record the subaqueous reworking and deposition of tephra from the erosion and degradation of a proximal, entirely submerged ancient Surtseyan volcanic edifice (Cone II). South of this volcanic cone, the lowermost distal facies provides significant evidence of deposition as water-supported volcanic- or storm-driven mass flows (e.g. turbidity currents and mud/debris flows) of volcaniclastic and bioclastic debris, whereas the uppermost distal facies exhibit features of tractional sedimentary processes caused by shallow subaqueous currents. Further north, within the proximity of the volcanic edifice, the uppermost facies are represented by an abundant, diverse, large, and well preserved in situ fauna of shallow marine sessile invertebrates (e.g. corals and sponges) that reflect the protracted biotic stabiliszation and rebound following pulsed volcanic events. Over a period of time, these stable and wave-eroded volcanic platforms were inhabited by a flourishing and diversifying marine community of benthic and sessile pioneers (corals, bryozoans, molluscs, brachiopods, barnacles, sponges, foraminifera, etc.). This succession exhibits a vertical progression of sedimentary structures (i.e. density, cohesive and mass flows, and cross-bedding) and our interpretations indicate a shallowing upwards succession. This study reports for the first time mechanisms of degradation of a Surtseyan volcano on Chatham Islands and contributes to a better understanding of complex ancient volcano-sedimentary subaqueous terrains. This model of deposition (i.e. onlapping/overlapping features onto the remains of volcanic edifice(s), a vertical transition of structures from deeper- to shallower-marine environments, disaster faunas and subsequent preferential colonisation of diverse biota, including large in situ sessile invertebrates, on the summit), characterises an extraordinary example to be applied to other ancient subaqueous volcanic environments.

Microphytobenthos and benthic macroalgae determine sediment organic matter composition in shallow photic sediments

NASA Astrophysics Data System (ADS)

Hardison, A. K.; Canuel, E. A.; Anderson, I. C.; Tobias, C. R.; Veuger, B.; Waters, M.

2013-02-01

Benthic macroalgae are a common symptom of eutrophication in shallow coastal bays as a result of increased nutrient loads. Microphytobenthos (MPB) and benthic macroalgae play an important role in system metabolism within shallow coastal bays. However, their independent and interactive influences on sediment organic matter (SOM) are not well understood. We investigated the influence of macroalgae and MPB on SOM quantity and quality in an experimental mesocosm system using bulk and molecular level (total hydrolyzable amino acids, THAA; phospholipid linked fatty acids, PLFA; pigment) analyses. Our experiment used an incomplete factorial design made up of two factors, each with two levels: (1) light (ambient vs. dark) and (2) macroalgae (presence vs. absence of live macroalgae). Over the course of the 42-day experiment, total organic carbon (TOC) and total nitrogen (TN) increased under ambient light by 173 ± 14 and 141 ± 7%, respectively, compared to in the dark (78 ± 29 and 39 ± 22%). THAA comprised a substantial fraction of SOM (∼16% of TOC, 35% of TN) and followed TOC and TN accumulation patterns. Mole percent composition of the THAA pool indicated that SOM was composed of more labile organic material (e.g. L-glutamic acid, phenylalanine) under ambient light conditions while SOM in dark treatments was more degraded, with higher proportions of glycine and D-alanine. PLFA content, which represents viable biomass, made up ∼1% of TOC and contained high levels of algal fatty acids in the light, particularly PLFA derived from diatoms. In the presence of MPB (i.e. light and macroalgae treatments), SOM lability increased, resulting in the observed increases in bacterial PLFA concentrations. Macroalgae, which were added to half of the light treatments, decreased SOM accumulation compared to light treatments without macroalgae, with TOC and TN increasing by only 130 ± 32 and 94 ± 24 %, respectively. This decrease likely resulted from shading by macroalgae, which reduced production of MPB. The presence of macroalgae decreased SOM lability as well, which resulted in diminished buildup of bacterial biomass. By the final day of the experiment, PCA analyses revealed that sediment composition in treatments with macroalgae were more similar to dark treatments and less similar to light treatments without macroalgae. Overall MPB and benthic macroalgae fundamentally altered SOM quality and quantity, which may have notable ecological consequences for shallow-water systems such as increased hypoxia/anoxia, sulfide accumulation, enhanced mineralization and/or stimulated denitrification.

Coupled effects of vertical mixing and benthic grazing on phytoplankton populations in shallow, turbid estuaries

USGS Publications Warehouse

Koseff, Jeffrey R.; Holen, Jacqueline K.; Monismith, Stephen G.; Cloern, James E.

1993-01-01

Coastal ocean waters tend to have very different patterns of phytoplankton biomass variability from the open ocean, and the connections between physical variability and phytoplankton bloom dynamics are less well established for these shallow systems. Predictions of biological responses to physical variability in these environments is inherently difficult because the recurrent seasonal patterns of mixing are complicated by aperiodic fluctuations in river discharge and the high-frequency components of tidal variability. We might expect, then, less predictable and more complex bloom dynamics in these shallow coastal systems compared with the open ocean. Given this complex and dynamic physical environment, can we develop a quantitative framework to define the physical regimes necessary for bloom inception, and can we identify the important mechanisms of physical-biological coupling that lead to the initiation and termination of blooms in estuaries and shallow coastal waters? Numerical modeling provides one approach to address these questions. Here we present results of simulation experiments with a refined version of Cloern's (1991) model in which mixing processes are treated more realistically to reflect the dynamic nature of turbulence generation in estuaries. We investigated several simple models for the turbulent mixing coefficient. We found that the addition of diurnal tidal variation to Cloern's model greatly reduces biomass growth indicating that variations of mixing on the time scale of hours are crucial. Furthermore, we found that for conditions representative of South San Francisco Bay, numerical simulations only allowed for bloom development when the water column was stratified and when minimal mixing was prescribed in the upper layer. Stratification, however, itself is not sufficient to ensure that a bloom will develop: minimal wind stirring is a further prerequisite to bloom development in shallow turbid estuaries with abundant populations of benthic suspension feeders.

Recent benthic foraminifera and sedimentary facies distribution of the Abu Dhabi (United Arab Emirates) coastline

NASA Astrophysics Data System (ADS)

Fiorini, Flavia; Lokier, Stephen W.

2014-05-01

The distribution of benthic foraminifera and sedimentary facies from Recent coastline environments adjacent to the coastline of Abu Dhabi (UAE) was studied in detail with the aim to: 1) provide reliable analogs for understanding and interpreting the depositional environment of ancient shallow-marine sediments from the UAE; 2) assess any modifications in the distribution of benthic environments and sedimentary facies in an area affected by significant anthropogenic activities - particular construction and land reclamation. A total of 100 sea-floor sediment samples were collected in different shallow-marine sedimentary environments (nearshore shelf, beach-front, channels, ooid shoals, lagoon and mangals) close to the coastline of Abu Dhabi Island. Where possible, we revisited the sampling sites used in several studies conducted in the middle of last century (prior to any significant anthropogenic activities) to assess temporal changes in Recent benthic foraminifera and sedimentary facies distribution during the last 50 years. Five foraminiferal assemblages were recognized in the studied area. Species with a porcellaneous test mainly belonging to the genera Quinqueloculina, Triloculina, Spiroloculina, Sigmoilinita are common in all studied areas. Larger benthic foraminifera Peneroplis and Spirolina are particularly abundant in samples collected on seaweed. Hyaline foraminifera mostly belonging to the genera Elphidium, Ammonia, Bolivina and Rosalina are also common together with Miliolidae in the nearshore shelf and beach front. Agglutinated foraminifera (Clavulina, Textularia, Ammobaculites and Reophax) are present in low percentages. The species belonging to the genera Ammobaculites and Reophax are present only in the finest grain samples particularly in lagoons and mangal environments and have not been reported previously in the studied area. The majority of the ooid shoal sediments, the coarser sediments of the beach-front and samples collected in dredged channels do not contain living foraminifera and the dead assemblage is mostly composed of a few specimens of coarse-sized Miliolidae with fragmented or abraded tests, probably transported from nearby environments. While the shallow-water settings of the Abu Dhabi coastline continue to be areas of active carbonate sedimentation, there have been significant changes in facies distributions over the last 50 years. In particular: × The opportunistic genera Ammonia and Elphidium have become more abundant. Reophax and Ammobaculites are reported in the area for the first time. × With anthropogenic activities some environments, such as inner lagoons, are lost whilst other areas show resilience to anthropogenic activities with little change in sedimentary facies distribution and foraminiferal assemblage. × No living foraminifera are found in dredged channels. The detailed analysis of these changes in foraminifera distribution and sedimentary facies allows us to further our understanding of the effects of anthropogenic activities on shallow-marine environments. By so doing, we are better able to distinguish between those changes that result from anthropogenic activities and those that are a result of naturally-occurring environmental perturbations.

Benthic Habitat Mapping Using Multispectral High-Resolution Imagery: Evaluation of Shallow Water Atmospheric Correction Techniques.

PubMed

Eugenio, Francisco; Marcello, Javier; Martin, Javier; Rodríguez-Esparragón, Dionisio

2017-11-16

Remote multispectral data can provide valuable information for monitoring coastal water ecosystems. Specifically, high-resolution satellite-based imaging systems, as WorldView-2 (WV-2), can generate information at spatial scales needed to implement conservation actions for protected littoral zones. However, coastal water-leaving radiance arriving at the space-based sensor is often small as compared to reflected radiance. In this work, complex approaches, which usually use an accurate radiative transfer code to correct the atmospheric effects, such as FLAASH, ATCOR and 6S, have been implemented for high-resolution imagery. They have been assessed in real scenarios using field spectroradiometer data. In this context, the three approaches have achieved excellent results and a slightly superior performance of 6S model-based algorithm has been observed. Finally, for the mapping of benthic habitats in shallow-waters marine protected environments, a relevant application of the proposed atmospheric correction combined with an automatic deglinting procedure is presented. This approach is based on the integration of a linear mixing model of benthic classes within the radiative transfer model of the water. The complete methodology has been applied to selected ecosystems in the Canary Islands (Spain) but the obtained results allow the robust mapping of the spatial distribution and density of seagrass in coastal waters and the analysis of multitemporal variations related to the human activity and climate change in littoral zones.

Benthic Habitat Mapping Using Multispectral High-Resolution Imagery: Evaluation of Shallow Water Atmospheric Correction Techniques

PubMed Central

Eugenio, Francisco; Marcello, Javier; Martin, Javier

2017-01-01

Remote multispectral data can provide valuable information for monitoring coastal water ecosystems. Specifically, high-resolution satellite-based imaging systems, as WorldView-2 (WV-2), can generate information at spatial scales needed to implement conservation actions for protected littoral zones. However, coastal water-leaving radiance arriving at the space-based sensor is often small as compared to reflected radiance. In this work, complex approaches, which usually use an accurate radiative transfer code to correct the atmospheric effects, such as FLAASH, ATCOR and 6S, have been implemented for high-resolution imagery. They have been assessed in real scenarios using field spectroradiometer data. In this context, the three approaches have achieved excellent results and a slightly superior performance of 6S model-based algorithm has been observed. Finally, for the mapping of benthic habitats in shallow-waters marine protected environments, a relevant application of the proposed atmospheric correction combined with an automatic deglinting procedure is presented. This approach is based on the integration of a linear mixing model of benthic classes within the radiative transfer model of the water. The complete methodology has been applied to selected ecosystems in the Canary Islands (Spain) but the obtained results allow the robust mapping of the spatial distribution and density of seagrass in coastal waters and the analysis of multitemporal variations related to the human activity and climate change in littoral zones. PMID:29144444

Inland-coastal water interaction: Remote sensing application for shallow-water quality and algal blooms modeling

NASA Astrophysics Data System (ADS)

Melesse, Assefa; Hajigholizadeh, Mohammad; Blakey, Tara

2017-04-01

In this study, Landsat 8 and Sea-Viewing Wide Field-of-View Sensor (SeaWIFS) sensors were used to model the spatiotemporal changes of four water quality parameters: Landsat 8 (turbidity, chlorophyll-a (chl-a), total phosphate, and total nitrogen) and Sea-Viewing Wide Field-of-View Sensor (SeaWIFS) (algal blooms). The study was conducted in Florda bay, south Florida and model outputs were compared with in-situ observed data. The Landsat 8 based study found that, the predictive models to estimate chl-a and turbidity concentrations, developed through the use of stepwise multiple linear regression (MLR), gave high coefficients of determination in dry season (wet season) (R2 = 0.86(0.66) for chl-a and R2 = 0.84(0.63) for turbidity). Total phosphate and TN were estimated using best-fit multiple linear regression models as a function of Landsat TM and OLI,127 and ground data and showed a high coefficient of determination in dry season (wet season) (R2 = 0.74(0.69) for total phosphate and R2 = 0.82(0.82) for TN). Similarly, the ability of SeaWIFS for chl-a retrieval from optically shallow coastal waters by applying algorithms specific to the pixels' benthic class was evaluated. Benthic class was determined through satellite image-based classification methods. It was found that benthic class based chl-a modeling algorithm was better than the existing regionally-tuned approach. Evaluation of the residuals indicated the potential for further improvement to chl-a estimation through finer characterization of benthic environments. Key words: Landsat, SeaWIFS, water quality, Florida bay, Chl-a, turbidity

Virus-Bacterium Interactions in Water and Sediment of West African Inland Aquatic Systems

PubMed Central

Bettarel, Yvan; Bouvy, Marc; Dumont, Claire; Sime-Ngando, Télesphore

2006-01-01

The ecology of virioplankton in tropical aquatic ecosystems is poorly documented, and in particular, there are no references concerning African continental waters in the literature. In this study, we examined virus-bacterium interactions in the pelagic and benthic zones of seven contrasting shallow inland waters in Senegal, including one hypersaline lake. SYBR Gold-stained samples revealed that in the surface layers of the sites, the numbers of viruses were in the same range as the numbers of viruses reported previously for productive temperate systems. Despite high bacterial production rates, the percentages of visibly infected cells (as determined by transmission electron microscopy) were similar to the lowest percentages (range, 0.3 to 1.1%; mean, 0.5%) found previously at pelagic freshwater or marine sites, presumably because of the local environmental and climatic conditions. Since the percentages of lysogenic bacteria were consistently less than 8% for pelagic and benthic samples, lysogeny did not appear to be a dominant strategy for virus propagation at these sites. In the benthic samples, viruses were highly concentrated, but paradoxically, no bacteria were visibly infected. This suggests that sediment provides good conditions for virus preservation but ironically is an unfavorable environment for proliferation. In addition, given the comparable size distributions of viruses in the water and sediment samples, our results support the paradigm that aquatic viruses are ubiquitous and may have moved between the two compartments of the shallow systems examined. Overall, this study provides additional information about the relevance of viruses in tropical areas and indicates that the intensity of virus-bacterium interactions in benthic habitats may lower than the intensity in the adjacent bodies of water. PMID:16885276

Vertical oxygen minimum zone oscillations since 20 ka in Santa Barbara Basin: A benthic foraminiferal community perspective

NASA Astrophysics Data System (ADS)

Moffitt, Sarah E.; Hill, Tessa M.; Ohkushi, Kenichi; Kennett, James P.; Behl, Richard J.

2014-01-01

we present a history of deoxygenation of upper intermediate waters during the last deglaciation from Santa Barbara Basin (SBB), based on quantitative analyses of benthic foraminiferal assemblages, from a new shallow piston core above basin sill depth (MV0811-15JC, 418 m), and previously described sequences in the deeper basin (MD02-2504, 481 m and MD02-2503, 570 m). We document a 152 m depth transect of benthic foraminiferal assemblages to extract changing community structure (density, diversity, and evenness) and improve paleoenvironmental interpretation of late Quaternary vertical oscillations in the upper boundary of the oxygen minimum zone (OMZ). Close interaction between changes in open margin OMZ and that of the restricted SBB is documented using these quantitative techniques. MV0811-15JC, while being unlaminated, contains strongly hypoxic foraminiferal assemblages (including species Bolivina tumida and Nonionella stella), coeval with preserved sediment laminations in the deeper cores. Last Glacial Maximum (LGM) assemblages across this transect contained oxic fauna and high diversity. At 14.7 ka, glacial termination IA, hypoxic benthic fauna appeared across the transect, recording hypoxic waters (<0.5 ml L-1) < 300 m from the ocean surface. Bølling/Allerød (B/A) assemblages uniquely stand out in the record, exhibited by low density, diversity, and evenness, and taxonomic composition reflecting extreme and stressful hypoxia and methane-rich environments. Younger Dryas assemblages were diverse and composed of oxic fauna, similar to LGM assemblages. Termination IB initiated another deoxygenation shift, followed by OMZ-associated faunal and density patterns. This analysis strengthens the quantitative assessment of oxygen concentrations involved in deglacial OMZ change and reveals the unexpected, remarkable shallowness of OMZ influence during the B/A.

Benthic foraminifera at the Cretaceous-Tertiary boundary around the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Alegret, Laia; Molina, Eustoquio; Thomas, Ellen

2001-10-01

Cretaceous-Tertiary (K-T) boundary sections in northeastern Mexico contain marly formations separated by a controversial clastic unit. Benthic foraminifera in seven sections indicate middle and lower bathyal depths of deposition for the marls, with the exception of the upper bathyal northernmost section. Mixed neritic-bathyal faunas were present in the clastic unit, indicating redeposition in the deep basin by mass-wasting processes resulting from the K-T bolide impact in the Gulf of Mexico. Benthic foraminifera in the Mexican sections, and at other deep-sea locations, were not subject to major extinction at the time of impact, but there were temporary changes in assemblage composition. Benthic faunas indicate well- oxygenated bottom waters and mesotrophic conditions during the late Maastrichtian and increased food supply during the latest Maastrichtian. The food supply decreased drastically just after the K-T boundary, possibly because of the collapse of surface productivity. Cretaceous and early Paleogene benthic foraminifera, however, did not exhibit the benthic-pelagic coupling of present-day faunas, as documented by the lack of significant extinction at the K-T collapse of surface productivity. Much of the food supplied to the benthic faunas along this continental margin might have been refractory material transported from land or shallow coastal regions. The decrease in food supply at the K-T boundary might be associated with the processes of mass wasting, which removed surface, food-rich sediment. Benthic faunas show a staggered pattern of faunal recovery in the lowermost Paleogene, consistent with a staged recovery of the vertical organic flux but also with a gradual buildup of organic matter in the sediment.

Benthic foraminiferal faunal and geochemical proxies as tracers for paleoenvironmental and paleoceanographic changes in the western Mediterranean over the last 24 ka

NASA Astrophysics Data System (ADS)

Pérez-Asensio, José N.; Cacho, Isabel; Frigola, Jaime; Pena, Leopoldo D.; Sierro, Francisco J.; Asioli, Alessandra; Kuhlmann, Jannis; Huhn, Katrin

2017-04-01

Paleoenvironmental and paleoceanographic changes in the western Mediterranean are reconstructed for the last 24 ka using a combination of benthic foraminiferal assemblages and geochemical proxies measured on benthic foraminiferal shells (Mg/Ca-deep water temperatures and stable isotopes). The studied materials are sediment cores HER-GC-UB06 and MD95-2043recovered at 946 m and 1841 m, respectively, from the Alboran Sea. At present, both core sites are bathed by the Western Mediterranean Deep Water (WMDW), although UB06 core is close to the boundary with the overlying Levantine Intermediate Water (LIW). Therefore, past variability of both water masses can potentially be recorded by the benthic foraminiferal proxies from the studied sites. Benthic foraminiferal assemblages and geochemical data show fluctuations in bottom-water ventilation, organic matter accumulation and deep-water temperatures related to WMDW and LIW circulation. During the glacial interval, an alternation of events showing better ventilation (higher abundance of Cibicides pachyderma) with lower temperatures and events of warmer deep water temperatures with poorer ventilation (Nonionella iridea assemblage, lower abundance of C. pachyderma) are observed. This variability might reflect stronger WMDW formation during the Last Glacial Maximum (LGM) and Heinrich Stadial 1. During the Bølling-Allerød and Younger Dryas (YD) periods, cold temperatures and the lowest oxygenation rates are recorded coinciding with the highest abundance of deep infaunal taxa on both UB06 and MD95-2043 cores. This interval was coetaneous to the deposition of an Organic Rich Layer in the Alboran Sea. However, a re-ventilation trend started at the end of the YD in the shallower site (UB06 core) whereas low-oxygen conditions prevailed until the end of the early Holocene in the deep site (MD95-2043 core). During the early Holocene a significant deep water temperature increase occurred at the shallower site suggesting the replacement of WMDW by warmer water mass, likely LIW. In the middle Holocene, highly variable bottom-water oxygenation and temperatures are observed showing warmer deep waters with less oxygen content (higher deep and intermediate infaunal abundances). The late Holocene (last 4 ka) was characterized by slightly cooler deep water temperatures and enhanced oxygen levels supporting that WMDW became dominant at the shallower site. These observations reveal that Mediterranean thermohaline system has been highly variable during the studied period supporting its high sensitivity to changing climate conditions. These results open a new insight into the Mediterranean sensitivity to Holocene climate variability.

Geospatial Video Monitoring of Benthic Habitats Using the Shallow-Water Positioning System (SWaPS)

DTIC Science & Technology

2007-01-01

established from the video frames collected using SWaPS. C) Cover contours for the seagrass Thalassia testudinum. A B C surveyed using a spatial grid...distributions of seagrass species within this area are clearly influenced by their tolerance to salinity patterns. Thalassia testudinum, a species

Processes Affecting the Variability of Fluorescence Signals from Benthic Targets in Shallow Waters

DTIC Science & Technology

1999-09-30

isolated green fluorescent proteins from a variety of cnidarians and characterized their spectral signatures and biochemical characteristics. RESULTS...types of GFP-like fluorophores are present in Cnidarians . The first one had the only excitation band centered at ca. 495 nm; the second type had two

Benthic algae compensate for phytoplankton losses in large aquatic ecosystems.

PubMed

Brothers, Soren; Vadeboncoeur, Yvonne; Sibley, Paul

2016-12-01

Anthropogenic activities can induce major trophic shifts in aquatic systems, yet we have an incomplete understanding of the implication of such shifts on ecosystem function and on primary production (PP) in particular. In recent decades, phytoplankton biomass and production in the Laurentian Great Lakes have declined in response to reduced nutrient concentrations and invasive mussels. However, the increases in water clarity associated with declines in phytoplankton may have positive effects on benthic PP at the ecosystem scale. Have these lakes experienced oligotrophication (a reduction of algal production), or simply a shift in autotrophic structure with no net decline in PP? Benthic contributions to ecosystem PP are rarely measured in large aquatic systems, but our calculations based on productivity rates from the Great Lakes indicate that a significant proportion (up to one half, in Lake Huron) of their whole-lake production may be benthic. The large declines (5-45%) in phytoplankton production in the Great Lakes from the 1970s to 2000s may be substantially compensated by benthic PP, which increased by up to 190%. Thus, the autotrophic productive capacity of large aquatic ecosystems may be relatively resilient to shifts in trophic status, due to a redirection of production to the near-shore benthic zone, and large lakes may exhibit shifts in autotrophic structure analogous to the regime shifts seen in shallow lakes. © 2016 John Wiley & Sons Ltd.

Major determinants of the biogeographic pattern of the shallow-sea fauna

NASA Technical Reports Server (NTRS)

Valentine, J. W.; Jablonski, D.

1982-01-01

The benthic shallow-sea is defined as the region of sea floor lying between the supralittoral zone at the shoreline and the impingement of the thermocline separating a warm shallow and variable portion of the water column from rather homogeneous and constant cooler waters beneath. Three types of shallow-sea provinces can be recognized: (1) one-dimensional, linear shelves; (2) two-dimensional shelves; and (3) scattered islands in two-dimensional arrays. Dispersal powers of marine invertebrates vary with developmental mode, and patterns of dispersal, endemism and speciation vary among the different provincial types. Invertebrate developmental modes vary systematically with geography, and presumably are adaptive to environmental conditions. Clades with only a single mode of development tend to be restricted to regions appropriate to that mode, significantly affecting their biogeographic patterns. The consequences of geographic and other environmental changes are reviewed.

Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth.

PubMed

Brown, Alastair; Thatje, Sven

2014-05-01

Bathymetric biodiversity patterns of marine benthic invertebrates and demersal fishes have been identified in the extant fauna of the deep continental margins. Depth zonation is widespread and evident through a transition between shelf and slope fauna from the shelf break to 1000 m, and a transition between slope and abyssal fauna from 2000 to 3000 m; these transitions are characterised by high species turnover. A unimodal pattern of diversity with depth peaks between 1000 and 3000 m, despite the relatively low area represented by these depths. Zonation is thought to result from the colonisation of the deep sea by shallow-water organisms following multiple mass extinction events throughout the Phanerozoic. The effects of low temperature and high pressure act across hierarchical levels of biological organisation and appear sufficient to limit the distributions of such shallow-water species. Hydrostatic pressures of bathyal depths have consistently been identified experimentally as the maximum tolerated by shallow-water and upper bathyal benthic invertebrates at in situ temperatures, and adaptation appears required for passage to deeper water in both benthic invertebrates and demersal fishes. Together, this suggests that a hyperbaric and thermal physiological bottleneck at bathyal depths contributes to bathymetric zonation. The peak of the unimodal diversity-depth pattern typically occurs at these depths even though the area represented by these depths is relatively low. Although it is recognised that, over long evolutionary time scales, shallow-water diversity patterns are driven by speciation, little consideration has been given to the potential implications for species distribution patterns with depth. Molecular and morphological evidence indicates that cool bathyal waters are the primary site of adaptive radiation in the deep sea, and we hypothesise that bathymetric variation in speciation rates could drive the unimodal diversity-depth pattern over time. Thermal effects on metabolic-rate-dependent mutation and on generation times have been proposed to drive differences in speciation rates, which result in modern latitudinal biodiversity patterns over time. Clearly, this thermal mechanism alone cannot explain bathymetric patterns since temperature generally decreases with depth. We hypothesise that demonstrated physiological effects of high hydrostatic pressure and low temperature at bathyal depths, acting on shallow-water taxa invading the deep sea, may invoke a stress-evolution mechanism by increasing mutagenic activity in germ cells, by inactivating canalisation during embryonic or larval development, by releasing hidden variation or mutagenic activity, or by activating or releasing transposable elements in larvae or adults. In this scenario, increased variation at a physiological bottleneck at bathyal depths results in elevated speciation rate. Adaptation that increases tolerance to high hydrostatic pressure and low temperature allows colonisation of abyssal depths and reduces the stress-evolution response, consequently returning speciation of deeper taxa to the background rate. Over time this mechanism could contribute to the unimodal diversity-depth pattern. © 2013 Natural Environment Research Council. Biological Reviews published by John Wiley & Sons Ltd on behalf of Cambridge Philosophical Society.

Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth

PubMed Central

Brown, Alastair; Thatje, Sven

2014-01-01

Bathymetric biodiversity patterns of marine benthic invertebrates and demersal fishes have been identified in the extant fauna of the deep continental margins. Depth zonation is widespread and evident through a transition between shelf and slope fauna from the shelf break to 1000 m, and a transition between slope and abyssal fauna from 2000 to 3000 m; these transitions are characterised by high species turnover. A unimodal pattern of diversity with depth peaks between 1000 and 3000 m, despite the relatively low area represented by these depths. Zonation is thought to result from the colonisation of the deep sea by shallow-water organisms following multiple mass extinction events throughout the Phanerozoic. The effects of low temperature and high pressure act across hierarchical levels of biological organisation and appear sufficient to limit the distributions of such shallow-water species. Hydrostatic pressures of bathyal depths have consistently been identified experimentally as the maximum tolerated by shallow-water and upper bathyal benthic invertebrates at in situ temperatures, and adaptation appears required for passage to deeper water in both benthic invertebrates and demersal fishes. Together, this suggests that a hyperbaric and thermal physiological bottleneck at bathyal depths contributes to bathymetric zonation. The peak of the unimodal diversity–depth pattern typically occurs at these depths even though the area represented by these depths is relatively low. Although it is recognised that, over long evolutionary time scales, shallow-water diversity patterns are driven by speciation, little consideration has been given to the potential implications for species distribution patterns with depth. Molecular and morphological evidence indicates that cool bathyal waters are the primary site of adaptive radiation in the deep sea, and we hypothesise that bathymetric variation in speciation rates could drive the unimodal diversity–depth pattern over time. Thermal effects on metabolic-rate-dependent mutation and on generation times have been proposed to drive differences in speciation rates, which result in modern latitudinal biodiversity patterns over time. Clearly, this thermal mechanism alone cannot explain bathymetric patterns since temperature generally decreases with depth. We hypothesise that demonstrated physiological effects of high hydrostatic pressure and low temperature at bathyal depths, acting on shallow-water taxa invading the deep sea, may invoke a stress–evolution mechanism by increasing mutagenic activity in germ cells, by inactivating canalisation during embryonic or larval development, by releasing hidden variation or mutagenic activity, or by activating or releasing transposable elements in larvae or adults. In this scenario, increased variation at a physiological bottleneck at bathyal depths results in elevated speciation rate. Adaptation that increases tolerance to high hydrostatic pressure and low temperature allows colonisation of abyssal depths and reduces the stress–evolution response, consequently returning speciation of deeper taxa to the background rate. Over time this mechanism could contribute to the unimodal diversity–depth pattern. PMID:24118851

Ocean acidification in the coastal zone from an organism's perspective: multiple system parameters, frequency domains, and habitats.

PubMed

Waldbusser, George G; Salisbury, Joseph E

2014-01-01

Multiple natural and anthropogenic processes alter the carbonate chemistry of the coastal zone in ways that either exacerbate or mitigate ocean acidification effects. Freshwater inputs and multiple acid-base reactions change carbonate chemistry conditions, sometimes synergistically. The shallow nature of these systems results in strong benthic-pelagic coupling, and marine invertebrates at different life history stages rely on both benthic and pelagic habitats. Carbonate chemistry in coastal systems can be highly variable, responding to processes with temporal modes ranging from seconds to centuries. Identifying scales of variability relevant to levels of biological organization requires a fuller characterization of both the frequency and magnitude domains of processes contributing to or reducing acidification in pelagic and benthic habitats. We review the processes that contribute to coastal acidification with attention to timescales of variability and habitats relevant to marine bivalves.

[Benthic fauna associated to a Thalassia testudinum (Hydrocharitaceae) bed in Parque Nacional Morrocoy, Venezuela].

PubMed

Rodríguez, C; Villamizar, E

2000-12-01

The benthic fauna and diel variation in a shallow seagrass bed (Thalassia testudinum) were studied in Playa Mero, Venezuela. Samples of organisms and sediments were taken using PVC cylinders, 5cm in diameter, along a transect perpendicular to the coast. Seagrass cover, shoot density and biomass were estimated. The seagrass cover was homogeneous along the transect. The intermediate zone had the highest number of shoots and of above-ground and rhizome biomass. Composition and abundance of benthic organisms were related with seagrass and sediment characteristics. Sediment organic matter content and organism abundance were highest near the shore Molluscs, polychaetes, oligochaetes and nematodes were the most abundant groups. Species richness was higher in daytime (40 versus 28 at night). Gastropods were the most abundant organisms both at day and night while polychaetes and crustaceans increased during the day, and holoturids were more numerous at night.

Exceptional discovery of a shallow-water hydrothermal site in the SW area of Basiluzzo islet (Aeolian archipelago, South Tyrrhenian Sea): An environment to preserve.

PubMed

Esposito, Valentina; Andaloro, Franco; Canese, Simonepietro; Bortoluzzi, Giovanni; Bo, Marzia; Di Bella, Marcella; Italiano, Francesco; Sabatino, Giuseppe; Battaglia, Pietro; Consoli, Pierpaolo; Giordano, Patrizia; Spagnoli, Federico; La Cono, Violetta; Yakimov, Michail M; Scotti, Gianfranco; Romeo, Teresa

2018-01-01

The geological, biological and geochemical features of a particular field of hydrothermal vents, discovered in the Panarea Volcanic Complex during a research survey carried out in 2015, are described for the first time. The site, located at 70-80 m depth off the South-western coast of the islet of Basiluzzo, was named Smoking Land for the presence of a large number of wide and high active chimneys and was characterized in terms of dissolved benthic fluxes, associated macrofauna and megafauna communities and preliminary mineralogy and geochemistry of chimney structures. On the whole field, a total of 39 chimneys, different in size and shape, were closely observed and described; 14 of them showed emission of low temperature hydrothermal fluids of marine origin characterized by acidified chemical conditions. The CTD and benthic chamber measurements highlighted that the Smoking Land is able to form a sea water bottom layer characterized by variable acidity and high DIC and trace elements concentrations; these characteristics weaken moving away from the chimney mouths. The SEM-EDS analysis of the collected solid samples revealed a chimney structure principally composed by amorphous and low crystalline Fe-oxyhydroxides of hydrothermal origins. The ROV explorations revealed a wide coverage of red algae (Peyssonnelia spp.) colonized by the green algae Flabiella petiolata and by suspension feeders, mainly sponges, but also bryozoans, and tubicolous polychaetes. Although novent-exclusive species were identified, the benthic communities found in association to the chimneys included more taxa than those observed in the surrounding no-vent rocky areas. These first findings evidence a submarine dynamic habitat where geological, chemical and biological processes are intimately connected, making the Smoking Land an important site in terms of marine heritage that should be safeguarded and protected.

Dating the Barremian-Aptian shallow platform deposits at the eastern part of the Kopet Dagh sedimentary basin, NE Iran

NASA Astrophysics Data System (ADS)

Chenarani, Atefeh; Hosseini, Seyedabolfazl; Vahidi Nia, Mohammad

2016-04-01

The Kopet Dagh sedimentary basin covers the northeastern part of Iran, most parts of Turkmenistan and north of Afghanistan which contains several giant gas fields. The extension of this basin in the Iranian part is around 55km2(Afshar Harb, 1994). The Kopet Dagh basin is marked by having very thick sedimentary rocks and lack of volcanic activity. During the Lower Cretaceous, the Tirgan Formation was deposited in a shallow platform setting and lithologically includes in thick-bedded orbitolinid limestones. This study focuses on the biostratigraphy and age determination of these shallow-water deposits using benthic foraminifera and calcareous green algae. In the studied outcrop, the Tirgan Formation has a thickness of 180 m and includes in limestone beds with some marly intervals. It is overlain by the Sarcheshmeh Formation and rests on the Shurijeh Formation. Both contacts are believed to be transitional and lack of discontinuity. A total of 56 thin-sections were used in this study. This study led to determine 28 genera and 14 species of benthic foraminifera along with 13 genera and 5 species of calcareous green algae. Based on the obtained biostratigraphy data, a late Barremian-early Aptian age is suggested for these deposits. We also defined the precise boundary between the Barremian and Aptian which is reported for the first time from this area. Keywords: Barremian-Aptian, Shallow platform, Kopet Dagh, Iran. Reference: Afshar Harb, A., 1994. Geology of Iran: Geology of the Kopet Dagh. Geological survey of Iran, Report No. 11, 275 pp.

The Northern Bering Sea: An Arctic Ecosystem in Change

NASA Astrophysics Data System (ADS)

Grebmeier, J. M.; Cooper, L. W.

2004-12-01

Arctic systems can be rich and diverse habitats for marine life in spite of the extreme cold environment. Benthic faunal populations and associated biogeochemical cycling processes are influenced by sea-ice extent, seawater hydrography (nutrients, salinity, temperature, currents), and water column production. Benthic organisms on the Arctic shelves and margins are long-term integrators of overlying water column processes. Because these organisms have adapted to living at cold extremes, it is reasonable to expect that these communities will be among the most susceptible to climate warming. Recent observations show that Arctic sea ice in the North American Arctic is melting and retreating northward earlier in the season and the timing of these events can have dramatic impacts on the biological system. Changes in overlying primary production, pelagic-benthic coupling, and benthic production and community structure can have cascading effects to higher trophic levels, particularly benthic feeders such as walruses, gray whales, and diving seaducks. Recent indicators of contemporary Arctic change in the northern Bering Sea include seawater warming and reduction in ice extent that coincide with our time-series studies of benthic clam population declines in the shallow northern Bering shelf in the 1990's. In addition, declines in benthic amphipod populations have also likely influenced the movement of feeding gray whales to areas north of Bering Strait during this same time period. Finally a potential consequence of seawater warming and reduced ice extent in the northern Bering Sea could be the northward movement of bottom feeding fish currently in the southern Bering Sea that prey on benthic fauna. This would increase the feeding pressure on the benthic prey base and enhance competition for this food source for benthic-feeding marine mammals and seabirds. This presentation will outline recent biological changes observed in the northern Bering Sea ecosystem as documented in a 20-yr environmental time-series in the Bering Strait region.

Influx of Dissolved Silica in Shallow Marine Environments in the Early Rhaetian (Late Triassic): Implications for Timing of Supercontinental Rifting

NASA Astrophysics Data System (ADS)

Tackett, L.

2017-12-01

The Rhaetian Stage of the Late Triassic terminated with a mass extinction, but the late Norian-early Rhaetian paleoecological and geochemical transitions and their relationship to events leading up to the End-Triassic mass extinction are poorly understood. To address this issue, presented here is a multi-proxy dataset from New York Canyon, Nevada (USA) relating isotope chemostratigraphy (Sr, C, O), shallow marine benthic macrofossils, and microfossils. At this Panthalassan locality the Norian-Rhaetian boundary is characterized by a negative strontium isotope excursion that facilitates correlation with Tethyan deposits. In sedimentary horizons immediately below and above this excursion, siliceous demosponge spicules (desmids) are abundant components of the microfossil populations, and silicification of calcareous microfossils becomes common. In the sedimentary beds marking the main excursion, hexactinellid sponge spicules are abundant. These results indicate a large input of dissolved silica in shallow marine environments, while the negative strontium values are consistent with increased seafloor spreading and hydrothermal vent activity or basalt weathering, either scenario being a plausible silica source for the typically silica-limited sponges that proliferated during this interval. The biosedimentary features observed across the Norian-Rhaetian boundary are similar to those observed in the earliest Jurassic in marine sections around the world following the End-Triassic mass extinction, but no clear biotic turnover is observed across the Norian-Rhaetian boundary in this succession. Thus, biosedimentary shifts across the Norian-Rhaetian boundary may add important geochemical context to the end-Triassic mass extinction event.

Benthic algal production across lake size gradients: interactions among morphometry, nutrients, and light.

PubMed

Vadeboncoeur, Yvonne; Peterson, Garry; Vander Zanden, M Jake; Kalff, Jacob

2008-09-01

Attached algae play a minor role in conceptual and empirical models of lake ecosystem function but paradoxically form the energetic base of food webs that support a wide variety of fishes. To explore the apparent mismatch between perceived limits on contributions of periphyton to whole-lake primary production and its importance to consumers, we modeled the contribution of periphyton to whole-ecosystem primary production across lake size, shape, and nutrient gradients. The distribution of available benthic habitat for periphyton is influenced by the ratio of mean depth to maximum depth (DR = z/ z(max)). We modeled total phytoplankton production from water-column nutrient availability, z, and light. Periphyton production was a function of light-saturated photosynthesis (BPmax) and light availability at depth. The model demonstrated that depth ratio (DR) and light attenuation strongly determined the maximum possible contribution of benthic algae to lake production, and the benthic proportion of whole-lake primary production (BPf) declined with increasing nutrients. Shallow lakes (z < or =5 m) were insensitive to DR and were dominated by either benthic or pelagic primary productivity depending on trophic status. Moderately deep oligotrophic lakes had substantial contributions by benthic primary productivity at low depth ratios and when maximum benthic photosynthesis was moderate or high. Extremely large, deep lakes always had low fractional contributions of benthic primary production. An analysis of the world's largest lakes showed that the shapes of natural lakes shift increasingly toward lower depth ratios with increasing depth, maximizing the potential importance of littoral primary production in large-lake food webs. The repeatedly demonstrated importance of periphyton to lake food webs may reflect the combination of low depth ratios and high light penetration characteristic of large, oligotrophic lakes that in turn lead to substantial contributions of periphyton to autochthonous production.

Admiralty Bay Benthos Diversity—A census of a complex polar ecosystem

NASA Astrophysics Data System (ADS)

Siciński, Jacek; Jażdżewski, Krzysztof; Broyer, Claude De; Presler, Piotr; Ligowski, Ryszard; Nonato, Edmundo F.; Corbisier, Thais N.; Petti, Monica A. V.; Brito, Tania A. S.; Lavrado, Helena P.; BŁażewicz-Paszkowycz, Magdalena; Pabis, Krzysztof; Jażdżewska, Anna; Campos, Lucia S.

2011-03-01

A thorough census of Admiralty Bay benthic biodiversity was completed through the synthesis of data, acquired from more than 30 years of observations. Most of the available records arise from successive Polish and Brazilian Antarctic expeditions organized since 1977 and 1982, respectively, but also include new data from joint collecting efforts during the International Polar Year (2007-2009). Geological and hydrological characteristics of Admiralty Bay and a comprehensive species checklist with detailed data on the distribution and nature of the benthic communities are provided. Approximately 1300 species of benthic organisms (excluding bacteria, fungi and parasites) were recorded from the bay's entire depth range (0-500 m). Generalized classifications and the descriptions of soft-bottom and hard-bottom invertebrate communities are presented. A time-series analysis showed seasonal and interannual changes in the shallow benthic communities, likely to be related to ice formation and ice melt within the bay. As one of the best studied regions in the maritime Antarctic Admiralty Bay represents a legacy site, where continued, systematically integrated data sampling can evaluate the effects of climate change on marine life. Both high species richness and high assemblage diversity of the Admiralty Bay shelf benthic community have been documented against the background of habitat heterogeneity.

Neogene biostratigraphy and paleoenvironments of Enewetak Atoll, equatorial Pacific Ocean

USGS Publications Warehouse

Cronin, T. M.; Bybell, L.M.; Brouwers, E.M.; Gibson, T.G.; Margerum, R.; Poore, R.Z.

1991-01-01

Micropaleontologic analyses of Neogene sediments from Enewetak Atoll, Marshall Islands, provide data on the age of lagoonal deposits, stratigraphic disconformities and the paleoenvironmental and subsidence history of the atoll. Benthic foraminifers, planktic foraminifers, calcareous nannofossils and ostracodes were studied from six boreholes, the deepest penetrating 1605 feet below the lagoon floor into upper Oligocene strata. The Oligocene-Miocene boundary occurs at about 1200 ft below the lagoon floor. The early and middle Miocene is characterized by brief periods of deposition and numerous hiatuses. Ostracodes and benthic foraminifers indicate a shallow-marine reefal environment with occasional brackish water conditions. Upper Miocene and lower Pliocene deposits placed in calcareous nannofossil Zones NN9-15 and in planktic foraminifer Zones N16-19 contain species-rich benthic microfaunas which indicate alternating reefal and brackish water mangrove environments. The upper Pliocene contains at least two major depositional hiatuses that coincide with a major faunal turnover in benthic foraminiferal and ostracode assemblages. The Quaternary is characterized by benthic microfaunas similar to those of modern atoll lagoons and is punctuated by at least 11 disconformities which signify periods of low sea level. Atoll subsidence rates during the last 10 Ma averaged 30 to 40 m/m.y. ?? 1991 Elsevier Science Publishers B.V. All rights reserved.

Differences in composition of shallow-water marine benthic communities associated with two ophiolitic rock substrata

NASA Astrophysics Data System (ADS)

Bavestrello, Giorgio; Bo, Marzia; Betti, Federico; Canessa, Martina; Gaggero, Laura; Rindi, Fabio; Cattaneo-Vietti, Riccardo

2018-01-01

On marine rocky shores, several physical, chemical and biological processes operate to maintain the benthic assemblages' heterogeneity, but among the abiotic factors, the composition and texture of the rocky substrata have been only sporadically considered. However, biomineralogical studies have demonstrated an unsuspected ability of the benthic organisms to interact at different levels with rocky substrata. Therefore, the mineralogy of the substratum can affect the structure of benthic communities. To evaluate this hypothesis, the macrobenthic assemblages developed on two different ophiolitic rocks (serpentinites and metagabbros) in contact at a restricted stretch of the western Ligurian Riviera (western Mediterranean Sea), with identical environmental and climatic conditions, were analysed. Samplings were carried out at four bathymetric levels (+1m, 0m, -1m, and -3m respect to the mean sea level) and the analysis of the data evidenced differences in terms of species distribution and percent coverage. Algal communities growing on metagabbros were poorer in species richness and showed a much simpler structure when compared to the assemblages occurring on the serpentinites. The most widely distributed animal organism, the barnacle Chthamalus stellatus, was dominant on serpentinites, and virtually absent on metagabbros. Our results suggest a complex pattern of interactions between lithology and benthic organisms operating through processes of inhibition/facilitation related to the mineral properties of the substratum.

Gray whale distribution relative to benthic invertebrate biomass and abundance: Northeastern Chukchi Sea 2009-2012

NASA Astrophysics Data System (ADS)

Brower, Amelia A.; Ferguson, Megan C.; Schonberg, Susan V.; Jewett, Stephen C.; Clarke, Janet T.

2017-10-01

The shallow continental shelf waters of the Bering and Chukchi seas are the northernmost foraging grounds of North Pacific gray whales (Eschrichtius robustus). Benthic amphipods are considered the primary prey of gray whales in these waters, although no comprehensive quantitative analysis has been performed to support this assumption. Gray whale relative abundance, distribution, and behavior in the northeastern Chukchi Sea (69°-72°N, 155-169°W) were documented during aerial surveys in June-October 2009-2012. Concurrently, vessel-based benthic infaunal sampling was conducted in the area in July-August 2009-10, September 2011, and August 2012. Gray whales were seen in the study area each month that surveys were conducted, with the majority of whales feeding. Statistical analyses confirm that the highest densities of feeding gray whales were associated with high benthic amphipod abundance, primarily within 70 km of shore from Point Barrow to Icy Cape, in water <50 m deep. Conversely, gray whales were not seen in 40-km×40-km cells containing benthic sampling stations with 85 m-2 or fewer amphipods. Continuing broad-scale aerial surveys in the Chukchi Sea and prey sampling near feeding gray whales will be an important means to monitor and document ongoing and predicted ecosystem changes.

Deep-sea Benthic Foraminifera in the SE Atlantic across Eocene Hyperthermal Events

NASA Astrophysics Data System (ADS)

Thomas, E.

2016-12-01

Short-term episodes of global warming (hyperthermal events) were superimposed on the warming trend into the Early Eocene Climate Optimum (EECO). The Paleocene-Eocene Thermal Maximum (PETM; 56 Ma) was the most extreme, followed by Eocene Thermal Maximum-2 and -3 (ETM2: 1.8 myr, ETM3: 3.1 myr post-PETM). Hyperthermals are characterized by negative carbon isotope excursions (CIEs, emission of isotopically light carbon in the ocean-atmosphere), negative oxygen isotope excursions (global warming) and carbonate dissolution (ocean acidification). Sensitivity of biota to environmental changes due to carbon emissions can be evaluated by studying their response to hyperthermals of different magnitude. Deep-sea benthic foraminiferal records across PETM, ETM2 and -3 are available for Site 1262 (3600 m) and 1263 (1500m) on SE Atlantic Walvis Ridge. Benthic foraminifera (carbonate and agglutinated) are absent in the carbonate-free PETM clay-layer (Site 1262: 65 kyr; Site1263: 10 kyr). Deep-sea benthic foraminifera suffered extinction and diversity loss at the start of the PETM, as they did globally, with diversity recovering only partially. Stable isotope records show a larger PETM-CIE and amount of warming at Site 1263 than global average (McCarren et al., 2008), and warming was more pronounced at Site 1263 than at 1262 during ETM2 (Jennions et al., 2015) and ETM3 (Roehl et al., 2005). During ETM2 and -3, carbonate dissolution affected the sites, both remaining between CCD and lysocline. Assemblages were more severely affected (larger drop in benthic foraminiferal accumulation rates, BFAR) at the shallower site, opposite to expected if caused mainly by carbonate corrosivity. The large decrease in BFAR indicates a decline in food arrival at the sea floor, more pronounced at the shallower site, as supported by changes in relative and absolute abundance of species, and more pronounced at ETM2 than at ETM3. Greater warming at intermediate depths could have been caused by ocean circulation changes, with the greater warming more severely affecting metabolic rates of benthic foraminifera, thus patterns of effective food supply, species and diversity change. Roehl et al. 2005 GSA Abstr. 37: 264. McCarren et al. 2008 G3, 9 (10): Q10008. Jennions et al. 2015 Paleoceanogr. 30: 1059-1077

Hyporheic exchange along a river below a dam

Treesearch

Alessandra Marzadri; Daniele Tonina; James A. McKean; Matt Tiedemann

2012-01-01

Hyporheic exchange is an important mechanism for solute mixing between river waters and shallow groundwater in streambed sediment. The hyporheic zone also provides an important ecotone for benthic species, including macro-invertebrates, microorganisms, and parts of some fish life stages. Most hyporheic analyses are limited in scope and performed at the reach scale....

Estimation of diffuse attenuation of ultraviolet light in optically shallow Florida Keys waters from MODIS measurements

EPA Science Inventory

Diffuse attenuation of solar light (Kd, m−1) determines the percentage of light penetrating the water column and available for benthic organisms. Therefore, Kd can be used as an index of water quality for coastal ecosystems that are dependent on photosynthesis, such as the coral ...

Processes Affecting the Variability of Fluorescence Signals from Benthic Targets in Shallow Waters

DTIC Science & Technology

2001-09-30

symbiotic corals. - Limnol. and Oceanogr., 46: 75-85. Gorbunov M.Y. and Falkowski P.G. 2001. Photoreceptors in the cnidarian hosts allow symbiotic...Gorbunov M.Y. and Falkowski P.G. 2001. Photoreceptors in the cnidarian hosts allow symbiotic corals to sense blue moonlight. – Limnol. and Oceanogr

The trophic position of the alien crab Rhithropanopeus harrisii (crustacea decapoda panopeidae) in the Taman Bay, Sea of Azov community

NASA Astrophysics Data System (ADS)

Zalota, A. K.; Kolyuchkina, G. A.; Tiunov, A. V.; Biriukova, S. V.; Spiridonov, V. A.

2017-03-01

This work concerns the trophic web positioning of the alien crab Rhithropanopeus harrisii and other common marine invertebrate species and fishes in the benthic ecosystem of the shallows of Taman Bay, Sea of Azov. The base of the trophic web in this system is composed of phytoplankton, macrophytes (algae and marine grasses), and reeds that use atmospheric carbon for photosynthesis. Analysis of the isotopic composition of nitrogen and carbon has shown that although marine grasses are dominating primary producers in the shallows of the bay, primary consumers (such as Cerastoderma glaucum, Porifera gen. sp., Gammarus aequicauda, Deshayesorchestia deshayesii and Idotea balthica) only partially use this organic source; instead, they use a combination of different sources of primary production. It has been shown that the food source of the alien crab is primarily of animal origin. In Taman Bay, R. harrisii is on the same trophic level as other carnivores/scavengers: benthic fishes Syngnathus nigrolineatus, Gobius spp. and native crab Pilumnus hirtellus and shrimp Palaemon adspersus.

Assessing the suitability of benthic foraminiferal morpho-groups to reconstruct paleomonsoon from Bay of Bengal

NASA Astrophysics Data System (ADS)

Manasa, M.; Saraswat, Rajeev; Nigam, Rajiv

2016-04-01

Temporal changes in benthic foraminiferal morpho-groups were suggested as an effective proxy to reconstruct past monsoon intensity from the Arabian Sea. Here, in order to test the applicability of temporal variation in morpho-groups to reconstruct past monsoon intensity from the Bay of Bengal, we have documented recent benthic foraminiferal distribution from the continental shelf region of the northwestern Bay of Bengal. Based on the external morphology, benthic foraminifera were categorized into rounded symmetrical (RSBF) and angular asymmetrical benthic foraminifera (AABF). Additionally, a few other dominant groups were also identified based on test composition (agglutinated, calcareous) and abundance (Asterorotalids and Nonions). The relative abundance of each group was compared with the ambient physico-chemical conditions, including dissolved oxygen, organic matter, salinity and temperature. We report that the RSBF are abundant in comparatively warm and well oxygenated waters of low salinity, suggesting a preference for high energy environment, whereas AABF dominate relatively cold, hypersaline deeper waters with low dissolved oxygen, indicating a low energy environment. The agglutinated foraminifera, Asterorotalids and Nonions dominate shallow water, low salinity regions, whereas the calcareous benthic foraminiferal abundance increases away from the riverine influx regions. Food availability, as estimated from organic carbon abundance in sediments, has comparatively less influence on faunal distribution in the northwestern Bay of Bengal, as compared to dissolved oxygen, temperature and salinity. We conclude that the factors associated with freshwater influx affect the distribution of benthic foraminiferal morpho-groups in the northwestern Bay of Bengal and thus it can be used to reconstruct past monsoon intensity from the Bay of Bengal.

Long-term (1998 vs. 2010) large-scale comparison of soft-bottom benthic macrofauna composition in the Gulf of Lions, NW Mediterranean Sea

NASA Astrophysics Data System (ADS)

Bonifácio, Paulo; Grémare, Antoine; Gauthier, Olivier; Romero-Ramirez, Alicia; Bichon, Sabrina; Amouroux, Jean-Michel; Labrune, Céline

2018-01-01

We achieved a long term (i.e., 1998 vs. 2010) large scale (i.e., whole Gulf of Lions) study of benthic macrofauna composition in the Gulf of Lions based on the resampling of 91 stations located along 21 inshore-offshore transects. Results show that the 3 main benthic communities identified in 1998 were still present in 2010 although their composition changed. Using only year and station of sampling we found a significant space-time interaction explaining changes in macrofaunal community composition, and, in this study, stations differ primarily in terms of depth and distance to the Rhône river mouth. Temporal changes in benthic macrofauna composition were clearly most important at shallow stations (i.e., in the Littoral Fine Sand community) than at deep ones (i.e., Terrigenous Coastal Mud community). These results are in good agreement with the current paradigm according to which climatic oscillations such as NAO (North Atlantic Oscillation) and WeMO (Western Mediterranean Oscillation) are indirectly (i.e., through changes in the frequency of occurrence and the intensity of storms) controlling benthic macrofauna composition in the Gulf of Lions. This hypothesis is further supported by a meta-analysis of changes in the average and maximal yearly abundances of the polychaete Ditrupa arietina. At last, the spatial modelling of 1998 and 2010 benthic macrofauna compositions both suggested a significant effect of Rhône River inputs on the spatial distribution of benthic macrofauna in the Gulf of Lions.

Lake Level Variation in Small Lakes: Not a Clear Picture

NASA Astrophysics Data System (ADS)

Starratt, S.

2017-12-01

Lake level is a useful tool for identifying regional changes in precipitation and evaporation. Due to the volume of water in large lakes, they may only record large-scale changes in water balance, while smaller lakes may record more subtle variations. However, the record of water level in small lakes is affected by a number of factors including elevation, bathymetry, nutrient load, and aquatic macrophyte abundance. The latest Quaternary diatom records from three small lakes with areas of <10 ha (Hobart Lake, OR, 1458 masl; Swamp Lake, CA, 1554 masl; Favre Lake, NV, 2899 masl) and a larger lake (Medicine Lake, CA, 2036 masl, 154 ha) were compared in this study. All the lakes have a deep central basin (>10 m) surrounded by a shallow (1-2 m) shelf. Changes in the abundance of diatoms representing different life habits (benthic, tychoplanktic, planktic) were used to identify lake level variation. Benthic taxa dominate the assemblage when only the central basin is occupied. As the shallow shelf is flooded, the abundance of tychoplanktic taxa increases. Planktic taxa increase with the establishment of stratification. Favre Lake presents the clearest indication of initial lake level rise (7600-5750 cal yr BP) and intermittent flooding of the shelf for the remainder of the record. Stratification appears to become established only in the last few hundred years. Higher nutrient levels in the early part of the Hobart Lake record lead to a nearly monotypic planktic assemblage which is replaced by a tychoplanktic-dominated assemblage as the lake floods the shelf at about 3500 cal yr BP. The last 500 years is dominated by benthic taxa associated with aquatic macrophytes. The consistent presence of planktic taxa in the Swamp Lake record suggests that the lake was stratified during most of its history, although slight variations in the relative abundances of planktic and tychoplanktic groups occur. The Medicine Lake record shows a gradual increase in planktic species between 11,400 and 5500 cal yr BP, reflecting a gradual increase in stratification. Changes in the abundance of benthic and planktic taxa during the remainder of the record indicate variations in the shallow (<2 m) part of the lake. These results indicate diatom ecological groups show promise as a proxy for lake level reconstructions, and further ground-truthing is necessary.

Longitudinal patterns and response lengths of algae in riverine ecosystems: A model analysis emphasising benthic-pelagic interactions.

PubMed

Jäger, Christoph G; Borchardt, Dietrich

2018-04-07

In riverine ecosystems primary production is principally possible in two habitats: in the benthic layer by sessile algae and in the surface water by planktonic algae being transported downstream. The relevance of these two habitats generally changes along the rivers' continuum. However, analyses of the interaction of algae in these two habitats and their controlling factors in riverine ecosystems are, so far, very rare. We use a simplified advection-diffusion model system combined with ecological process kinetics to analyse the interaction of benthic and planktonic algae and nutrients along idealised streams and rivers at regional to large scales. Because many of the underlying processes affecting algal dynamics are influenced by depth, we focus particularly on the impact of river depth on this interaction. At constant environmental conditions all state variables approach stable spatial equilibria along the river, independent of the boundary conditions at the upstream end. Because our model is very robust against changes of turbulent diffusion and stream velocity, these spatial equilibria can be analysed by a simplified ordinary differential equation (ode) version of our model. This model variant reveals that at shallower river depths, phytoplankton can exist only when it is subsidised by detaching benthic algae, and in turn, at deeper river depths, benthic algae can exist only in low biomasses which are subsidised by sinking planktonic algae. We generalise the spatial dynamics of the model system using different conditions at the upstream end of the model, which mimic various natural or anthropogenic factors (pristine source, dam, inflow of a waste water treatment plant, and dilution from e.g. a tributary) and analyse how these scenarios influence different aspects of the longitudinal spatial dynamics of the full spatial model: the relation of spatial equilibrium to spatial maximum, the distance to the spatial maximum, and the response length. Generally, our results imply that shallow systems recover within significantly shorter distances from spatially distinct disturbances when compared to deep systems, independent of the type of disturbance. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Coastal High-resolution Observations and Remote Sensing of Ecosystems (C-HORSE)

NASA Technical Reports Server (NTRS)

Guild, Liane

2016-01-01

Coastal benthic marine ecosystems, such as coral reefs, seagrass beds, and kelp forests are highly productive as well as ecologically and commercially important resources. These systems are vulnerable to degraded water quality due to coastal development, terrestrial run-off, and harmful algal blooms. Measurements of these features are important for understanding linkages with land-based sources of pollution and impacts to coastal ecosystems. Challenges for accurate remote sensing of coastal benthic (shallow water) ecosystems and water quality are complicated by atmospheric scattering/absorption (approximately 80+% of the signal), sun glint from the sea surface, and water column scattering (e.g., turbidity). Further, sensor challenges related to signal to noise (SNR) over optically dark targets as well as insufficient radiometric calibration thwart the value of coastal remotely-sensed data. Atmospheric correction of satellite and airborne remotely-sensed radiance data is crucial for deriving accurate water-leaving radiance in coastal waters. C-HORSE seeks to optimize coastal remote sensing measurements by using a novel airborne instrument suite that will bridge calibration, validation, and research capabilities of bio-optical measurements from the sea to the high altitude remote sensing platform. The primary goal of C-HORSE is to facilitate enhanced optical observations of coastal ecosystems using state of the art portable microradiometers with 19 targeted spectral channels and flight planning to optimize measurements further supporting current and future remote sensing missions.

From Offshore to Onshore: Multiple Origins of Shallow-Water Corals from Deep-Sea Ancestors

PubMed Central

Lindner, Alberto; Cairns, Stephen D.; Cunningham, Clifford W.

2008-01-01

Shallow-water tropical reefs and the deep sea represent the two most diverse marine environments. Understanding the origin and diversification of this biodiversity is a major quest in ecology and evolution. The most prominent and well-supported explanation, articulated since the first explorations of the deep sea, holds that benthic marine fauna originated in shallow, onshore environments, and diversified into deeper waters. In contrast, evidence that groups of marine organisms originated in the deep sea is limited, and the possibility that deep-water taxa have contributed to the formation of shallow-water communities remains untested with phylogenetic methods. Here we show that stylasterid corals (Cnidaria: Hydrozoa: Stylasteridae)—the second most diverse group of hard corals—originated and diversified extensively in the deep sea, and subsequently invaded shallow waters. Our phylogenetic results show that deep-water stylasterid corals have invaded the shallow-water tropics three times, with one additional invasion of the shallow-water temperate zone. Our results also show that anti-predatory innovations arose in the deep sea, but were not involved in the shallow-water invasions. These findings are the first robust evidence that an important group of tropical shallow-water marine animals evolved from deep-water ancestors. PMID:18560569

Effects of the Herbicide Imazapyr on Benthic Macroinvertebrates in a Logged Pond Cypress Dome

Treesearch

Mark D. Fowlkes; Jerry L. Michael; Thomas L. Crisman; Joseph P. Prenger

2003-01-01

Increased herbicide use in silviculture over the last several decades has led to concern over potential water contamination, which may affect biotic health. In the southeastern United States, pine Ratwoods are important for timber production and are often interspersed with cypress wetlands. Cypress domes are isolated, shallow basins that collect surficial waters from...

Benthic Trophic Interactions in an Antarctic Shallow Water Ecosystem Affected by Recent Glacier Retreat.

PubMed

Pasotti, Francesca; Saravia, Leonardo Ariel; De Troch, Marleen; Tarantelli, Maria Soledad; Sahade, Ricardo; Vanreusel, Ann

2015-01-01

The western Antarctic Peninsula is experiencing strong environmental changes as a consequence of ongoing regional warming. Glaciers in the area are retreating rapidly and increased sediment-laden meltwater runoff threatens the benthic biodiversity at shallow depths. We identified three sites with a distinct glacier-retreat related history and different levels of glacial influence in the inner part of Potter Cove (King George Island, South Shetland Islands), a fjord-like embayment impacted since the 1950s by a tidewater glacier retreat. We compared the soft sediment meio- and macrofauna isotopic niche widths (δ13C and δ15N stable isotope analysis) at the three sites to investigate possible glacier retreat-related influences on benthic trophic interactions. The isotopic niches were locally shaped by the different degrees of glacier retreat-related disturbance within the Cove. Wider isotopic niche widths were found at the site that has become ice-free most recently, and narrower niches at the older ice-free sites. At an intermediate state of glacier retreat-related disturbance (e.g. via ice-growler scouring) species with different strategies could settle. The site at the earliest stage of post-retreat development was characterized by an assemblage with lower trophic redundancy. Generally, the isotopic niche widths increased with increasing size spectra of organisms within the community, excepting the youngest assemblage, where the pioneer colonizer meiofauna size class displayed the highest isotopic niche width. Meiofauna at all sites generally occupied positions in the isotopic space that suggested a detrital-pool food source and/or the presence of predatory taxa. In general ice scour and glacial impact appeared to play a two-fold role within the Cove: i) either stimulating trophic diversity by allowing continuous re-colonization of meiofaunal species or, ii) over time driving the benthic assemblages into a more compact trophic structure with increased connectedness and resource recycling.

Benthic Trophic Interactions in an Antarctic Shallow Water Ecosystem Affected by Recent Glacier Retreat

PubMed Central

Pasotti, Francesca; Saravia, Leonardo Ariel; De Troch, Marleen; Tarantelli, Maria Soledad; Sahade, Ricardo; Vanreusel, Ann

2015-01-01

The western Antarctic Peninsula is experiencing strong environmental changes as a consequence of ongoing regional warming. Glaciers in the area are retreating rapidly and increased sediment-laden meltwater runoff threatens the benthic biodiversity at shallow depths. We identified three sites with a distinct glacier-retreat related history and different levels of glacial influence in the inner part of Potter Cove (King George Island, South Shetland Islands), a fjord-like embayment impacted since the 1950s by a tidewater glacier retreat. We compared the soft sediment meio- and macrofauna isotopic niche widths (δ13C and δ15N stable isotope analysis) at the three sites to investigate possible glacier retreat-related influences on benthic trophic interactions. The isotopic niches were locally shaped by the different degrees of glacier retreat-related disturbance within the Cove. Wider isotopic niche widths were found at the site that has become ice-free most recently, and narrower niches at the older ice-free sites. At an intermediate state of glacier retreat-related disturbance (e.g. via ice-growler scouring) species with different strategies could settle. The site at the earliest stage of post-retreat development was characterized by an assemblage with lower trophic redundancy. Generally, the isotopic niche widths increased with increasing size spectra of organisms within the community, excepting the youngest assemblage, where the pioneer colonizer meiofauna size class displayed the highest isotopic niche width. Meiofauna at all sites generally occupied positions in the isotopic space that suggested a detrital-pool food source and/or the presence of predatory taxa. In general ice scour and glacial impact appeared to play a two-fold role within the Cove: i) either stimulating trophic diversity by allowing continuous re-colonization of meiofaunal species or, ii) over time driving the benthic assemblages into a more compact trophic structure with increased connectedness and resource recycling. PMID:26559062

Acoustic mapping and classification of benthic habitat using unsupervised learning in artificial reef water

NASA Astrophysics Data System (ADS)

Li, Dong; Tang, Cheng; Xia, Chunlei; Zhang, Hua

2017-02-01

Artificial reefs (ARs) are effective means to maintain fishery resources and to restore ecological environment in coastal waters. ARs have been widely constructed along the Chinese coast. However, understanding of benthic habitats in the vicinity of ARs is limited, hindering effective fisheries and aquacultural management. Multibeam echosounder (MBES) is an advanced acoustic instrument capable of efficiently generating large-scale maps of benthic environments at fine resolutions. The objective of this study is to develop a technical approach to characterize, classify, and map shallow coastal areas with ARs using an MBES. An automated classification method is designed and tested to process bathymetric and backscatter data from MBES and transform the variables into simple, easily visualized maps. To reduce the redundancy in acoustic variables, a principal component analysis (PCA) is used to condense the highly collinear dataset. An acoustic benthic map of bottom sediments is classified using an iterative self-organizing data analysis technique (ISODATA). The approach is tested with MBES surveys in a 1.15 km2 fish farm with a high density of ARs off the Yantai coast in northern China. Using this method, 3 basic benthic habitats (sandy bottom, muddy sediments, and ARs) are distinguished. The results of the classification are validated using sediment samples and underwater surveys. Our study shows that the use of MBES is an effective method for acoustic mapping and classification of ARs.

Paleoenvironmental and ecological changes during the Eocene-Oligocene transition based on foraminifera from the Cap Bon Peninsula in North East Tunisia

NASA Astrophysics Data System (ADS)

Grira, Chaima; Karoui-Yaakoub, Narjess; Negra, Mohamed Hédi; Rivero-Cuesta, Lucia; Molina, Eustoquio

2018-07-01

Biostratigraphic analysis of the Eocene-Oligocene transition (E-O) at the Menzel Bou Zelfa and Jhaff composite section in the Cap Bon Peninsula (North East Tunisia) allowed us to recognize a continuous planktic foraminiferal biozonation: E14 Globigerinatheka semiinvoluta Zone, E15 Globigerinatheka index Zone, E16 Hantkenina alabamensis Zone and O1 Pseudohastigerina naguewichiensis Zone. A quantitative study of benthic and planktic foraminifera assemblages was carried out and the richness and diversity of foraminifera allowed us to reconstruct the paleoenvironmental evolution from marine to terrestrial environments. From the Eocene E14 Zone, the foraminiferal association characterizes a relatively warm climate with considerable oxygen content and a dominance of keeled and spinose planktic foraminifera, which became extinct at the E/O boundary, possibly due to cooling of the planktic environment. Nevertheless, the small benthic foraminifera do not show an extinction event at the Eocene/Oligocene (E/O) boundary, indicating that the benthic environment was not significantly affected. In the basal Oligocene O1 Zone, the benthic environment changes to a shallower setting due to cooling of the climate. These changes generated a remarkable dominance of globular forms in the planktic environment. Small benthic foraminifera apparently have a gradual extinction event, or more likely a gradual pattern of local disappearances, that could have been caused by the Oi1 glaciation.

Cumulative impacts on seabed habitats: an indicator for assessments of good environmental status.

PubMed

Korpinen, Samuli; Meidinger, Manuel; Laamanen, Maria

2013-09-15

The European seas are under anthropogenic pressures impacting the state of water quality, benthic habitats and species. The EU Marine Strategy Framework Directive (MSFD) requires the Member States to assess the impacts of pressures and make a programme of measures leading to good environmental status (GES) by 2020. This study presents a method for assessing the quantity and distribution of anthropogenic impacts on benthic habitats in the Baltic Sea by using spatial data of human pressures and benthic habitats. The southern sub-basins were more extensively impacted than the northern sub-basins. Over the entire sea area, deep sea habitats were more impacted than shallower infralittoral and circalittoral habitats. Sand and coarse sediments were the seabed types relatively most impacted in the Baltic Sea scale. A comparison against tentative thresholds for GES showed that in the sub-basin scale only one third of the habitat types was in GES. Copyright © 2013 Elsevier Ltd. All rights reserved.

Combining pixel and object based image analysis of ultra-high resolution multibeam bathymetry and backscatter for habitat mapping in shallow marine waters

NASA Astrophysics Data System (ADS)

Ierodiaconou, Daniel; Schimel, Alexandre C. G.; Kennedy, David; Monk, Jacquomo; Gaylard, Grace; Young, Mary; Diesing, Markus; Rattray, Alex

2018-06-01

Habitat mapping data are increasingly being recognised for their importance in underpinning marine spatial planning. The ability to collect ultra-high resolution (cm) multibeam echosounder (MBES) data in shallow waters has facilitated understanding of the fine-scale distribution of benthic habitats in these areas that are often prone to human disturbance. Developing quantitative and objective approaches to integrate MBES data with ground observations for predictive modelling is essential for ensuring repeatability and providing confidence measures for habitat mapping products. Whilst supervised classification approaches are becoming more common, users are often faced with a decision whether to implement a pixel based (PB) or an object based (OB) image analysis approach, with often limited understanding of the potential influence of that decision on final map products and relative importance of data inputs to patterns observed. In this study, we apply an ensemble learning approach capable of integrating PB and OB Image Analysis from ultra-high resolution MBES bathymetry and backscatter data for mapping benthic habitats in Refuge Cove, a temperate coastal embayment in south-east Australia. We demonstrate the relative importance of PB and OB seafloor derivatives for the five broad benthic habitats that dominate the site. We found that OB and PB approaches performed well with differences in classification accuracy but not discernible statistically. However, a model incorporating elements of both approaches proved to be significantly more accurate than OB or PB methods alone and demonstrate the benefits of using MBES bathymetry and backscatter combined for class discrimination.

Environmental Statement for Lavon Dam and Reservoir Modification and East Fork Channel Improvement - Pertaining to East Fork Channel and Levee Improvement Increment I. Supplement.

DTIC Science & Technology

1977-01-01

are capable of adapting to turbid conditions will probably be the dominant fish in the oxbows. The stream bottom dwelling population will not be much...the structure of the benthic conmunity. Snails ( gastropods ) and bivalve mollusks (pelecypods) are most abundant in the shallows areas. Stable gravel

Radiative Transfer in Seagrass Canopies

DTIC Science & Technology

1999-09-30

Radiative Transfer in Seagrass Canopies Richard C. Zimmerman Moss Landing Marine Laboratories P. O. Box 450 Moss Landing, CA 95039 phone (831) 655...models of radiative transfer for optically shallow waters with benthic substrates colonized by submerged plant canopies ( seagrasses and seaweeds). Such...coastal resources. SCIENTIFIC OBJECTIVES The objectives of this study are to • Develop radiative transfer models of seagrass and seaweed canopies in

Growth oscillation in larger foraminifera.

PubMed

Briguglio, Antonino; Hohenegger, Johann

2014-01-01

This work shows the potential for applying three-dimensional biometry to studying cell growth in larger benthic foraminifera. The volume of each test chamber was measured from the three-dimensional model obtained by means of computed tomography. Analyses of cell growth based on the sequence of chamber volumes revealed constant and significant oscillations for all investigated specimens, characterized by periods of approximately 15, 30, 90, and 360 days. Possible explanations for these periods are connected to tides, lunar cycles, and seasonality. The potential to record environmental oscillations or fluctuations during the lifetime of larger foraminifera is pivotal for reconstructing short-term paleoenvironmental variations or for gaining insight into the influence of tides or tidal current on the shallow-water benthic fauna in both recent and fossil environments.

Benthic foraminiferal response to environmental changes across Cenomanian/Turonian boundary (OAE2) in the northeastern Tethys, Kopet-Dagh basin

NASA Astrophysics Data System (ADS)

Kalanat, Behnaz; Vahidinia, Mohammad; Vaziri-Moghaddam, Hossein; Mahmudy-Gharaie, Mohamad Hosein; Kumon, Fujio

2017-10-01

In order to evaluate Oceanic Anoxic Event 2 (OAE2) at the Cenomanian-Turonian boundary and its effects on benthic foraminifera, the Taherabad stratigraphic section in the east of Kopet-Dagh basin was studied for pattern of changes in benthic foraminiferal communities. Total Organic Carbon (TOC) concentration at the Taherabad section shows that black shale was not deposited in this succession but TOC increases up to 0.68 wt% in the three intervals of Rotalipora cushmani, Whiteinella archaeocretacea and Helvetoglobotruncana helvetica Zones. Also, Total Nitrogen (TN) values were measured in our study succession. High TOC/TN ratios (up to 18) occur in the intervals of TOC enrichment. Foraminiferal assemblages, TOC, TOC/TN and Detrital Index (DI, an index for detrital input) changes in the study section allowed us to divided study section into 4 intervals. Interval A and C are associated with low abundance and diversity of benthic assemblages coeval with lack of planktic foraminifera. Benthic assemblages are strongly dominated by shallow and deep infaunal agglutinated foraminifera including Lagenammina, Saccammina, Reophax and Tritaxia. The foraminiferal composition associated with higher TOC, TOC/TN and DI suggest an influx of fresh water to the basin in the warm-wet periods, which diminished hospitable conditions for planktic foraminifera and probably enhanced land-derived organic matter and/or primary productivity. The hyposaline cap led to development of salinity-stratified water and induce bottom water oxygen depletion. By contrast, the assemblages found in the interval B and D are more diverse and contain high abundance of planktic and calcareous benthic foraminifera. Common benthic taxa in these parts are praebuliminids, lenticulinids, gavelinellids and Valvulineria. These assemblages associated with lower TOC, TOC/TN and DI indicate decreased detrital input and more normal marine condition resulted in improved ventilation of sea-floor, which is favorable for planktic and benthic taxa.

Microfacies analysis of foraminifera rich sedimentary rocks from the Desert Plateau, central Egypt.

NASA Astrophysics Data System (ADS)

Karnitschar, C.; Briguglio, A.; Hohenegger, J.

2012-04-01

Microfacies analysis on some samples from the Thebes Group have been carried on by means of thin sections. The study area is included in the Libyan Desert Plateau (central Egypt) at following coordinates N27° 36'30.58" E29° 44'58.34", near the biggest dune of Egypt, the Ghard Abu Muharik. Because of the round shape of the rocks and the desert patina on the surface they could easily be classified as the so called "Melonstones", which are located more southwards and mainly composed by stromatolites. On the contrary, the investigated samples show a completely different fauna and therefore have been separated from the "Melonstones". Even if shape and size are very similar and the desert patina covers all surfaces the same way the differences are impressive. To investigate the samples, two thin-sections have been prepared and analyzed at the microscope. The observed fauna is composed by: agglutinated benthic foraminifera (e.g., Dictyoconus egypticus), complex larger miliolids (e.g., Pseudolacazina cf. danatae, Fabularia sp.), alveolinids (Alveolina vredenburgi), green algae (Dasycladaceae), echinoids and corals. Because of the presence of symbionts bearing larger benthic foraminifera, which need light to feed photosymbionts, the rock was formed in a shallow water environment. With the abundant rock-building benthic foraminifera and calcareous algae the limestone shows a tendency to the packstone/wackestone facies. Based on the presence of Alveolina vredenburgi, the age of the samples can be estimate as lowermost Eocene belonging to the shallow benthic zone 5 (sensu Serra-Kiel et al., 1998). According the obtained data on stratigraphy and palaeoecology, a partial palaeoenvironmental reconstruction is possible for the Libyan Desert Plateau where outcrops are largely missing. Because of the round shape of the samples and the patina which covers them all around it can be assumed that they have been transported from longer distance. According to the geological map of the area and to the fauna observed in the sections, the source of the samples can be related to the Farafra Formation, which is characterized by white to grey alveolinid shallow water limestone. The closest outcrop belonging to this formation can be found around 50 kilometers westwards from the location where the samples were taken. Serra-Kiel J., Hottinger L., Caus E., Drobne K., Ferrà Ndez C., Jauhria.K., Less G., Pavlovec R., Pignatti J., Samsó J.M., Schaub H., Sirel E., Strougo A., Tambareau Y., Tosquella J., ZAKREVSKAYA E., 1998 - Larger Foraminiferal Biostratigraphy Of The Tethyan Paleocene And Eocene. Bull. Soc. géol. France, 169 (2): 281-299.

Geochemical signatures of benthic foraminifera shells from a heat-polluted shallow marine environment provide field evidence for growth and calcification under extreme warmth

NASA Astrophysics Data System (ADS)

Titelboim, Danna; Sadekov, Aleksey; Almogi-Labin, Ahuva; Herut, Barak; Kucera, Michal; Schmidt, Christiane; Hyams-Kaphzan, Orit; Abramovich, Sigal

2017-04-01

Shallow marine calcifiers play an important role as marine ecosystem engineers and in the global carbon cycle. Understanding their response to warming is essential to evaluate the fate of marine ecosystems under global change scenarios. So far, most data on thermal tolerance of marine calcifiers have been obtained by manipulative laboratory experiments. Such experiments provide valuable physiological data, but it remains unclear to what degree these observations apply to natural ecosystems. A rare opportunity to test the effect of warming acting on ecosystem-relevant scales is by investigation of heat-polluted coastal areas. Here we study growth and calcification in benthic foraminifera that inhabit a thermally polluted coastal area in Israel, where they are exposed to temperature elevated by 6˚ C above the natural seasonal temperature range and reaching up to ˜42˚ C in summer. Several species of benthic foraminifera have been previously shown to persist throughout the year in the heat-polluted area, allowing us to examine in natural conditions the thermal limits of growth and calcification under extreme temperatures as they are expected to prevail in the future. Live specimens of two known heat tolerant species Lachlanella sp. 1 and Pararotalia calcariformata were collected over a period of one year from two stations, representing thermally polluted and undisturbed (control) shallow hard bottom habitats. Single-chamber element ratios of these specimens were obtained using laser ablation and the Mg/Ca of the last chambers (grown closest to the time of collection) were used to calculate calcification temperatures. Our results provide the first direct field evidence that these foraminifera species not only persist extreme warm temperatures but continue to grow and calcify. Species-specific Mg/Ca thermometry indicates that P. calcariformata precipitate their shells at temperatures as high as 40˚ C and Lachlanella sp. 1 at least up to 36˚ C. Instead, both species showed a calcification threshold above the local winter temperatures. Calcification in P. calcariformata only occurred above 22˚ C and in Lachlanella sp. 1 above 15˚ C. Our observations from the heat-polluted area indicate that under future warming scenarios, growth and calcification in both benthic foraminifera species will not be inhibited during summer heat and the seasonal temperature window for their calcification will be expanded throughout much of the year. The observed inhibition of calcification at low temperatures indicates that the role of heat-tolerant foraminifera in carbonate production will most likely increase in future decades.

Deep-sea benthic response to rapid climatic oscillations of the last glacial cycle in the SE Bay of Biscay

NASA Astrophysics Data System (ADS)

Rodriguez-Lazaro, J.; Pascual, A.; Cacho, I.; Varela, Z.; Pena, L. D.

2017-12-01

Paleoclimatic evolution of the last 140 ka (Marine Isotopic Stages MIS 1 to MIS 5) in the South Bay of Biscay has been studied by considering microfossil changes in sediment samples of deep core PP10-17. This core was retrieved at 2882 m water depth (mwd) in the Landas Plateau and is formed by 1792 cm of clay-silt continuously deposited sediment. For this study, a total of 114 samples have been examined, yielding approximately 60 thousands of specimens of foraminifers (181 benthic species, BF) and ostracods (70 spp.). Reconstruction of the benthic response is based on the main foraminifer and ostracod species by considering their oxic/anoxic character as well as other ecological features of the assemblages. Detailed quantification of microfossils (planktonic and benthic foraminifers, ostracods) together with grain size analyses and magnetic susceptibility of the sediments allow us to characterize many of the climatic events registered in this core. Based on a robust chronostratigraphy by correlation with reference core MD95-2002 and Greenland ice core records (GICC05modelext), we are able to characterize a detailed response of benthic environments to cooling/warming, oxygen-content and productivity cycles in the region. MIS 5 has been characterized by oscillations of the planktonic/benthic foraminifer ratio (Oceanity index, OI; 60-90%); this index was higher (90-100%) and stable through the MIS 4-MIS 3 intervals. We found BF species indicators of different climatic-related events. Thus, MIS 5a, c, e interstadials are evidenced by Bulimina gibba and B. aculeata while the stadials MIS 5b, d are shown by the occurrence of Melonis pompilioides. Heinrich events, with massive iceberg discharges into the N Atlantic Ocean, are indicated by presence of Globobulimina affinis, particularly during the MIS 4 to MIS 2 interval. The beginning of MIS 4 is indicated by the appearance of new species of BF and an increase of Cassidulina laevigata. Krithe spp. and C. laevigata are good indicators of the LGM (Last Glacial Maximum, 19-23 ka) when the OI decreased. Other cooling periods (e.g. Younger Dryas, YD, around 12-13 ka) are shown as well by an increase of M. pompilioides, similar to that of the MIS 5d stadial. The Holocene (11.5 ka to present) is marked by an increase in the oceanity index, disappearance of cold-water indicators and the occurrence of Uvigerina peregrina. A shallow infaunal microhabitat of benthics foraminifers (Cibicides, Cassidulina, Uvigerina) and ostracods (Krithe, Argilloecia) has been linked to favorable bottom conditions, with oxic to slightly suboxic conditions (high diversity and equitability of assemblages) reflecting an active Atlantic Meridional Overturning Circulation (AMOC) during many D/O interstadials. The opposite conditions were established for deep infaunal BF (Bulimina, Globobulimina) where the strong dysoxic bottom conditions are indicative of poor ventilation produced by a reduction or shutdown of the AMOC during Heinrich stadials.

Integrating Multibeam Backscatter Angular Response, Mosaic and Bathymetry Data for Benthic Habitat Mapping

PubMed Central

Che Hasan, Rozaimi; Ierodiaconou, Daniel; Laurenson, Laurie; Schimel, Alexandre

2014-01-01

Multibeam echosounders (MBES) are increasingly becoming the tool of choice for marine habitat mapping applications. In turn, the rapid expansion of habitat mapping studies has resulted in a need for automated classification techniques to efficiently map benthic habitats, assess confidence in model outputs, and evaluate the importance of variables driving the patterns observed. The benthic habitat characterisation process often involves the analysis of MBES bathymetry, backscatter mosaic or angular response with observation data providing ground truth. However, studies that make use of the full range of MBES outputs within a single classification process are limited. We present an approach that integrates backscatter angular response with MBES bathymetry, backscatter mosaic and their derivatives in a classification process using a Random Forests (RF) machine-learning algorithm to predict the distribution of benthic biological habitats. This approach includes a method of deriving statistical features from backscatter angular response curves created from MBES data collated within homogeneous regions of a backscatter mosaic. Using the RF algorithm we assess the relative importance of each variable in order to optimise the classification process and simplify models applied. The results showed that the inclusion of the angular response features in the classification process improved the accuracy of the final habitat maps from 88.5% to 93.6%. The RF algorithm identified bathymetry and the angular response mean as the two most important predictors. However, the highest classification rates were only obtained after incorporating additional features derived from bathymetry and the backscatter mosaic. The angular response features were found to be more important to the classification process compared to the backscatter mosaic features. This analysis indicates that integrating angular response information with bathymetry and the backscatter mosaic, along with their derivatives, constitutes an important improvement for studying the distribution of benthic habitats, which is necessary for effective marine spatial planning and resource management. PMID:24824155

Reorganization of a marine trophic network along an inshore-offshore gradient due to stronger pelagic-benthic coupling in coastal areas

NASA Astrophysics Data System (ADS)

Kopp, Dorothée; Lefebvre, Sébastien; Cachera, Marie; Villanueva, Maria Ching; Ernande, Bruno

2015-01-01

Recent theoretical considerations have highlighted the importance of the pelagic-benthic coupling in marine food webs. In continental shelf seas, it was hypothesized that the trophic network structure may change along an inshore-offshore gradient due to weakening of the pelagic-benthic coupling from coastal to offshore areas. We tested this assumption empirically using the eastern English Channel (EEC) as a case study. We sampled organisms from particulate organic matter to predatory fishes and used baseline-corrected carbon and nitrogen stable isotope ratios (δ13C and δ15N) to determine their trophic position. First, hierarchical clustering on δ13C and δ15N coupled to bootstrapping and estimates of the relative contribution of pelagic and benthic carbon sources to consumers' diet showed that, at mesoscale, the EEC food web forms a continuum of four trophic levels with trophic groups spread across a pelagic and a benthic trophic pathway. Second, based on the same methods, a discrete approach examined changes in the local food web structure across three depth strata in order to investigate the inshore-offshore gradient. It showed stronger pelagic-benthic coupling in shallow coastal areas mostly due to a reorganization of the upper consumers relative to the two trophic pathways, benthic carbon sources being available to pelagic consumers and, reciprocally, pelagic sources becoming accessible to benthic species. Third a continuous approach examined changes in the mean and variance of upper consumers' δ13C and δ15N with depth. It detected a significant decrease in δ13C variance and a significant increase in δ15N variance as depth increases. A theoretical two-source mixing model showed that an inshore-offshore decrease in the pelagic-benthic coupling was a sufficient condition to produce the δ13C variance pattern, thus supporting the conclusions of the discrete approach. These results suggest that environmental gradients such as the inshore-offshore one should be accounted for to better understand marine food webs dynamics.

Natural radium and radon tracers to quantify water exchange and movement in reservoirs

USGS Publications Warehouse

Smith, Christopher G.; Baskaran, Mark

2011-01-01

Radon and radium isotopes are routinely used to quantify exchange rates between different hydrologic reservoirs. Since their recognition as oceanic tracers in the 1960s, both radon and radium have been used to examine processes such as air-sea exchange, deep oceanic mixing, benthic inputs, and many others. Recently, the application of radon-222 and the radium-quartet (223,224,226,228Ra) as coastal tracers has seen a revelation with the growing interest in coastal groundwater dynamics. The enrichment of these isotopes in benthic fluids including groundwater makes both radium and radon ideal tracers of coastal benthic processes (e.g. submarine groundwater discharge). In this chapter we review traditional and recent advances in the application of radon and radium isotopes to understand mixing and exchange between various hydrologic reservoirs, specifically: (1) atmosphere and ocean, (2) deep and shallow oceanic water masses, (3) coastal groundwater/benthic pore waters and surface ocean, and (4) aquifer-lakes. While the isotopes themselves and their distribution in the environment provide qualitative information about the exchange processes, it is mixing/exchange and transport models for these isotopes that provide specific quantitative information about these processes. Brief introductions of these models and mixing parameters are provided for both historical and more recent studies.

Spatial and Diel Variability in Photosynthetic and Photoprotective Pigments in Shallow Benthic Communities

DTIC Science & Technology

2002-09-30

phycocyanin analyses, the sediments were extracted repeatedly with a phosphate buffer. An ultrasonicator was used to extract pigments. Concentrations...species composition. While phycoerythrin concentrations varied around 20-fold, phycocyanin varied approximately 70-fold. The highest levels of...chlorophylls a and c, and phycocyanin were found in grapestone sediments and the lowest levels of chlorophylls a and c were found in ooid sands

Multi-scale streambed topographic and discharge effects on hyporheic at the stream network scale in confined streams

Treesearch

Alessandra Marzadri; Daniele Tonina; James A. McKean; Matthew G. Tiedemann; Rohan M. Benjankar

2014-01-01

The hyporheic zone is the volume of the streambed sediment mostly saturated with stream water. It is the transitional zone between stream and shallow-ground waters and an important ecotone for benthic species, including macro-invertebrates, microorganisms, and some fish species that dwell in the hyporheic zone for parts of their lives. Most hyporheic analyses are...

Processes Affecting Variability of Fluorescence Signals from Benthic Targets in Shallow Waters

DTIC Science & Technology

1997-09-30

processes in the Department of Chemistry at Brookhaven National Laboratory. The model organisms used are primarily cultured zooxanthellae obtained from...and closed (Fm) photosystem II reaction centers in the zooxanthellae isolated from the fire coral, Montipora. The short lifetime curve corresponds...individual zooxanthellae strains, is highly correlated Figure 2. The correlation between the average fluorescence lifetimes, calculated from a four

Effects of streambank fencing of pasture land on benthic macroinvertebrates and the quality of surface water and shallow ground water in the Big Spring Run basin of Mill Creek watershed, Lancaster County, Pennsylvania, 1993-2001

USGS Publications Warehouse

Galeone, Daniel G.; Brightbill, Robin A.; Low, Dennis J.; O'Brien, David L.

2006-01-01

Streambank fencing along stream channels in pastured areas and the exclusion of pasture animals from the channel are best-management practices designed to reduce nutrient and suspended-sediment yields from drainage basins. Establishment of vegetation in the fenced area helps to stabilize streambanks and provides better habitat for wildlife in and near the stream. This study documented the effectiveness of a 5- to 12-foot-wide buffer strip on the quality of surface water and near-stream ground water in a 1.42-mi2 treatment basin in Lancaster County, Pa. Two miles of stream were fenced in the basin in 1997 following a 3- to 4-year pre-treatment period of monitoring surface- and ground-water variables in the treatment and control basins. Changes in surface- and ground-water quality were monitored for about 4 years after fence installation. To alleviate problems in result interpretation associated with climatic and hydrologic variation over the study period, a nested experimental design including paired-basin and upstream/downstream components was used to study the effects of fencing on surface-water quality and benthic-macroinvertebrate communities. Five surface-water sites, one at the outlet of a 1.77-mi2 control basin (C-1), two sites in the treatment basin (T-3 and T-4) that were above any fence installation, and two sites (one at an upstream tributary site (T-2) and one at the outlet (T-1)) that were treated, were sampled intensively. Low-flow samples were collected at each site (approximately 25-30 per year at each site), and stormflow was sampled with automatic samplers at all sites except T-3. For each site where stormflow was sampled, from 35 to 60 percent of the storm events were sampled over the entire study period. Surface-water sites were sampled for analyses of nutrients, suspended sediment, and fecal streptococcus (only low-flow samples), with field parameters (only low-flow samples) measured during sample collection. Benthic-macroinvertebrate samples were collected in May and September of each year; samples were collected at the outlet of the control and treatment basins and at three upstream sites, two in the treatment basin and one in the control basin. For each benthic-macroinvertebrate sample: Stream riffles and pools were sampled using the kick-net method; habitat was characterized using Rapid Bioassessment Protocols (RBP); water-quality samples were collected for nutrients and suspended sediment; stream field parameters were measured; and multiple biological metrics were calculated. The experimental design to study the effects of fencing on the quality of near-stream shallow ground water involved a nested well approach. Two well nests were in the treatment basin, one each at surface-water sites T-1 and T-2. Within each well nest, the data from one deep well and three shallow wells (no greater than 12 ft deep) were used for regional characterization of ground-water quality. At each site, two of the shallow wells were inside the eventual fence (treated wells); the other shallow well was outside the eventual fence (control well). The wells were sampled monthly, primarily during periods with little to no recharge, for laboratory analysis of nutrients and fecal streptococcus; field parameters of water quality also were measured.

Exceptional discovery of a shallow-water hydrothermal site in the SW area of Basiluzzo islet (Aeolian archipelago, South Tyrrhenian Sea): An environment to preserve

PubMed Central

Andaloro, Franco; Canese, Simonepietro; Bo, Marzia; Di Bella, Marcella; Italiano, Francesco; Sabatino, Giuseppe; Battaglia, Pietro; Consoli, Pierpaolo; Giordano, Patrizia; Spagnoli, Federico; La Cono, Violetta; Yakimov, Michail M.; Scotti, Gianfranco; Romeo, Teresa

2018-01-01

The geological, biological and geochemical features of a particular field of hydrothermal vents, discovered in the Panarea Volcanic Complex during a research survey carried out in 2015, are described for the first time. The site, located at 70–80 m depth off the South-western coast of the islet of Basiluzzo, was named Smoking Land for the presence of a large number of wide and high active chimneys and was characterized in terms of dissolved benthic fluxes, associated macrofauna and megafauna communities and preliminary mineralogy and geochemistry of chimney structures. On the whole field, a total of 39 chimneys, different in size and shape, were closely observed and described; 14 of them showed emission of low temperature hydrothermal fluids of marine origin characterized by acidified chemical conditions. The CTD and benthic chamber measurements highlighted that the Smoking Land is able to form a sea water bottom layer characterized by variable acidity and high DIC and trace elements concentrations; these characteristics weaken moving away from the chimney mouths. The SEM-EDS analysis of the collected solid samples revealed a chimney structure principally composed by amorphous and low crystalline Fe-oxyhydroxides of hydrothermal origins. The ROV explorations revealed a wide coverage of red algae (Peyssonnelia spp.) colonized by the green algae Flabiella petiolata and by suspension feeders, mainly sponges, but also bryozoans, and tubicolous polychaetes. Although novent-exclusive species were identified, the benthic communities found in association to the chimneys included more taxa than those observed in the surrounding no-vent rocky areas. These first findings evidence a submarine dynamic habitat where geological, chemical and biological processes are intimately connected, making the Smoking Land an important site in terms of marine heritage that should be safeguarded and protected. PMID:29300784

Microbial interactions in marine water amended by eroded benthic biofilm: A case study from an intertidal mudflat

NASA Astrophysics Data System (ADS)

Montanié, Hélène; Ory, Pascaline; Orvain, Francis; Delmas, Daniel; Dupuy, Christine; Hartmann, Hans J.

2014-09-01

In shallow macrotidal ecosystems with large intertidal mudflats, the sediment-water coupling plays a crucial role in structuring the pelagic microbial food web functioning, since inorganic and organic matter and microbial components (viruses and microbes) of the microphytobenthic biofilm can be suspended toward the water column. Two experimental bioassays were conducted in March and July 2008 to investigate the importance of biofilm input for the pelagic microbial and viral loops. Pelagic inocula (< 0.6 μ- and < 10 μ filtrates) were diluted either with < 30 kDa-ultrafiltered seawater or with this ultrafiltrate enriched with the respective size-fractionated benthic biofilm or with < 30 kDa-benthic compounds (BC). The kinetics of heterotrophic nanoflagellates (HNF), bacteria and viruses were assessed together with bacterial and viral genomic fingerprints, bacterial enzymatic activities and viral life strategies. The experimental design allowed us to evaluate the effect of BC modulated by those of benthic size-fractionated microorganisms (virus + bacteria, + HNF). BC presented (1) in March, a positive effect on viruses and bacteria weakened by pelagic HNF. Benthic microorganisms consolidated this negative effect and sustained the viral production together with a relatively diverse and uneven bacterial assemblage structure; (2) in July, no direct impact on viruses but a positive effect on bacteria modulated by HNF, which indirectly enhanced viral multiplication. Both effects were intensified by benthic microorganisms and bacterial assemblage structure became more even. HNF indirectly profited from BC more in March than in July. The microbial loop would be stimulated by biofilm during periods of high resources (March) and the viral loop during periods of depleted resources (July).

Benthic foraminifers in the regional monitoring program’s San Francisco Estuary samples

USGS Publications Warehouse

McGann, Mary; Sloan, Doris

1999-01-01

For over three decades, sand-sized protozoans known as foraminifers have made contributions to our understanding of environmental problems in urban areas (Alve, 1991; Clark, 1971; Ellison et al., 1986; Watkins, 1961). Benthic foraminiferal assemblages are particularly sensitive pollution indicators in estuarine and coastal areas (Alve, 1995) because they vary spatially and temporally in relation to environmental variables and can respond to almost imperceptible physical change in the environment due to pollutants. Foraminifers also have similar distributions to those of shallow marine invertebrates (Buzas and Culver, 1991, 1993), and can therefore act as proxies for larger organisms in polluted environments. In addition, the ability of foraminifers to respond to environmental degradation is enhanced because they reproduce quickly, as often as every three months to one year (Murray, 1991).

Effects of laughing gull and shorebird predation on the intertidal fauna at Cape May, New Jersey

NASA Astrophysics Data System (ADS)

Botton, M. L.

1984-02-01

The intertidal flats of the Cape May, New Jersey shore of Delaware Bay are populated by large numbers of laughing gulls and migrating shorebirds during the spring and early summer. Exclusion of birds from a shallow slough and a sand bar had only minor effects on the infaunal benthic invertebrate assemblage at either site. The Cape May beaches provide a rich source of food in the form of horseshoe crab ( Limulus polyphemus) eggs; foraging on this item may be more profitable than probing the sediment for infauna. Gemma gemma, a small, thick-shelled bivalve, composed over 98% of the benthic infauna at both sites in 1980, and this species may be resistant to predation by certain shorebirds, as suggested by Schneider (1978).

The Structure and Distribution of Benthic Communities on a Shallow Seamount (Cobb Seamount, Northeast Pacific Ocean)

PubMed Central

Curtis, Janelle M. R.; Clarke, M. Elizabeth

2016-01-01

Partially owing to their isolation and remote distribution, research on seamounts is still in its infancy, with few comprehensive datasets and empirical evidence supporting or refuting prevailing ecological paradigms. As anthropogenic activity in the high seas increases, so does the need for better understanding of seamount ecosystems and factors that influence the distribution of sensitive benthic communities. This study used quantitative community analyses to detail the structure, diversity, and distribution of benthic mega-epifauna communities on Cobb Seamount, a shallow seamount in the Northeast Pacific Ocean. Underwater vehicles were used to visually survey the benthos and seafloor in ~1600 images (~5 m2 in size) between 34 and 1154 m depth. The analyses of 74 taxa from 11 phyla resulted in the identification of nine communities. Each community was typified by taxa considered to provide biological structure and/or be a primary producer. The majority of the community-defining taxa were either cold-water corals, sponges, or algae. Communities were generally distributed as bands encircling the seamount, and depth was consistently shown to be the strongest environmental proxy of the community-structuring processes. The remaining variability in community structure was partially explained by substrate type, rugosity, and slope. The study used environmental metrics, derived from ship-based multibeam bathymetry, to model the distribution of communities on the seamount. This model was successfully applied to map the distribution of communities on a 220 km2 region of Cobb Seamount. The results of the study support the paradigms that seamounts are diversity 'hotspots', that the majority of seamount communities are at risk to disturbance from bottom fishing, and that seamounts are refugia for biota, while refuting the idea that seamounts have high endemism. PMID:27792782

Importance of benthic prey for fishes in coral reef-associated sediments

USGS Publications Warehouse

DeFelice, R.C.; Parrish, J.D.

2003-01-01

The importance of open, sandy substrate adjacent to coral reefs as habitat and a food source for fishes has been little studied in most shallow tropical waters in the Pacific, including Hawai'i. In this study, in Hanalei Bay, Hiwai'i, we identified and quantified the major invertebrate fauna (larger than 0.5 mm) in the well-characterized sands adjoining the shallow fringing reefs. Concurrently, we identified the fish species that seemed to make substantial use of these sand habitats, estimated their density there, sampled their gut contents to examine trophic links with the sand habitat, and made other observations and collections to determine the times, locations, and types of activity there. A variety of (mostly small) polychaeres were dominant in the sediments at most sampling stations, along with many small crustaceans (e.g., amphipods, isopods, ostracods, and small shrimps) and fair numbers of mollusks (especially bivalves) and small echinoids. Fish guts examined contained ???77% of the total number of benthic taxa collected, including nearly all those just listed. However, fish consumption was selective, and the larger shrimps, crabs, and small cryptic fishes were dominant in the diets of most of the numerous predator taxa. Diets of benthic-feeding fishes showed relatively low specific overlap. The fish fauna in this area included substrate-indifferent pelagics, species with various degrees of reef relatedness, reef-restricted species, and (at the other extreme) permanent cryptic sand dwellers. Data on occurrence and movements of fishes indicated that a band of sandy substrate several tens of meters wide next to the reef was an active area for fishes, and activity was considerably different at different times of day and for fish of different ages. These results imply an important trophic role for the benthos in these near-reef habitats in support of reef-associated fishes.

A food web modeling analysis of a Midwestern, USA eutrophic lake dominated by non-native Common Carp and Zebra Mussels

USGS Publications Warehouse

Colvin, Michael E.; Pierce, Clay; Stewart, Timothy W.

2015-01-01

Food web modeling is recognized as fundamental to understanding the complexities of aquatic systems. Ecopath is the most common mass-balance model used to represent food webs and quantify trophic interactions among groups. We constructed annual Ecopath models for four consecutive years during the first half-decade of a zebra mussel invasion in shallow, eutrophic Clear Lake, Iowa, USA, to evaluate changes in relative biomass and total system consumption among food web groups, evaluate food web impacts of non-native common carp and zebra mussels on food web groups, and to interpret food web impacts in light of on-going lake restoration. Total living biomass increased each year of the study; the majority of the increase due to a doubling in planktonic blue green algae, but several other taxa also increased including a more than two-order of magnitude increase in zebra mussels. Common carp accounted for the largest percentage of total fish biomass throughout the study even with on-going harvest. Chironomids, common carp, and zebra mussels were the top-three ranking consumer groups. Non-native common carp and zebra mussels accounted for an average of 42% of the total system consumption. Despite the relatively high biomass densities of common carp and zebra mussel, food web impacts was minimal due to excessive benthic and primary production in this eutrophic system. Consumption occurring via benthic pathways dominated system consumption in Clear Lake throughout our study, supporting the argument that benthic food webs are significant in shallow, eutrophic lake ecosystems and must be considered if ecosystem-level understanding is to be obtained.

Early Cretaceous Shallow-Water Platform Carbonates of the Bolkar Mountains, Central Taurides - South Turkey: Facies Analysis and Depositional Environments

NASA Astrophysics Data System (ADS)

Solak, Cemile; Taslı, Kemal; Koç, Hayati

2016-10-01

The study area comprises southern non-metamorphic part of the Bolkar Mountains which are situated in southern Turkey, eastern part of the Central Taurides. The studied five outcrops form geologically parts of the tectonostratigraphic units called as allochthonous Aladag Unit and autochthonous Geyikdagi Unit. The aim of this study is to describe microfacies and depositional environments of the Bolkar Mountains Early Cretaceous shallow- water platform carbonates. The Lower Cretaceous is represented by continuous thick- bedded to massive dolomite sequence ranging from 100 to 150 meters thick, which only contains locally laminated limestone intercalations in the Yüğlük section and thick to very thick-bedded uniform limestones ranging from approximately 50 to 120 meters, consist of mainly laminated- fenestral mudstone, peloidal-intraclastic grainstone-packstone, bioclastic packstone- wackestone, benthic foraminiferal-intraclastic grainstone-packstone, ostracod-fenestral wackestone-mudstone, dasycladacean algal packstone-wackestone and ooidal grainstone microfacies. Based on a combination sedimantological data, facies/microfacies and micropaleontological (predominantly dasycladacean algae and diverse benthic foraminifera) analysis, it is concluded that Early Cretaceous platform carbonates of the Bolkar Mountains reflect a tidally affected tidal-flat and restricted lagoon settings. During the Berriasian- Valanginian unfavourable facies for benthic foraminifera and dolomitization were predominate. In the Hauterivian-early Aptian, the effect of dolomitization largely disappeared and inner platform conditions still prevailed showing alternations of peritidal and lagoon facies, going from peritidal plains (representing various sub-environments including supratidal, intertidal area, tidal-intertidal ponds and ooid bars) dominated by ostracod and miliolids, to dasycladacean algae-rich restricted lagoons-subtidal. These environments show a transition in the vertical and lateral directions in all studied stratigraphic sections.

Characterization of available light for seagrass and patch reef productivity in Sugarloaf Key, Lower Florida Keys

USGS Publications Warehouse

Toro-Farmer, Gerardo; Muller-Karger, Frank E.; Vega-Rodriguez, Maria; Melo, Nelson; Yates, Kimberly K.; Johns, Elizabeth; Cerdeira-Estrada, Sergio; Herwitz, Stan R.

2016-01-01

Light availability is an important factor driving primary productivity in benthic ecosystems, but in situ and remote sensing measurements of light quality are limited for coral reefs and seagrass beds. We evaluated the productivity responses of a patch reef and a seagrass site in the Lower Florida Keys to ambient light availability and spectral quality. In situ optical properties were characterized utilizing moored and water column bio-optical and hydrographic measurements. Net ecosystem productivity (NEP) was also estimated for these study sites using benthic productivity chambers. Our results show higher spectral light attenuation and absorption, and lower irradiance during low tide in the patch reef, tracking the influx of materials from shallower coastal areas. In contrast, the intrusion of clearer surface Atlantic Ocean water caused lower values of spectral attenuation and absorption, and higher irradiance in the patch reef during high tide. Storms during the studied period, with winds >10 m·s−1, caused higher spectral attenuation values. A spatial gradient of NEP was observed, from high productivity in the shallow seagrass area, to lower productivity in deeper patch reefs. The highest daytime NEP was observed in the seagrass, with values of almost 0.4 g·O2·m−2·h−1. Productivity at the patch reef area was lower in May than during October 2012 (mean = 0.137 and 0.177 g·O2·m−2·h−1, respectively). Higher photosynthetic active radiation (PAR) levels measured above water and lower light attenuation in the red region of the visible spectrum (~666 to ~699 nm) had a positive correlation with NEP. Our results indicate that changes in light availability and quality by suspended or resuspended particles limit benthic productivity in the Florida Keys.

Will the Displacement of Zebra Mussels by Quagga Mussels Increase Water Clarity in Shallow Lakes during Summer? Results from a Mesocosm Experiment.

PubMed

Mei, Xueying; Zhang, Xiufeng; Kassam, Sinan-Saleh; Rudstam, Lars G

2016-01-01

Zebra mussels (Dreissena polymorpha) are known to increase water clarity and affect ecosystem processes in invaded lakes. During the last decade, the conspecific quagga mussels (D. rostriformis bugensis) have displaced zebra mussels in many ecosystems including shallow lakes such as Oneida Lake, New York. In this study, an eight-week mesocosm experiment was conducted to test the hypothesis that the displacement of zebra mussels by quagga mussels leads to further decreases in phytoplankton and increases in water clarity resulting in increases in benthic algae. We found that the presence of zebra mussels alone (ZM), quagga mussels alone (QM), or an equal number of both species (ZQ) reduced total phosphorus (TP) and phytoplankton Chl a. Total suspended solids (TSS) was reduced in ZM and ZQ treatments. Light intensity at the sediment surface was higher in all three mussel treatments than in the no-mussel controls but there was no difference among the mussel treatments. There was no increase in benthic algae biomass in the mussel treatments compared with the no-mussel controls. Importantly, there was no significant difference in nutrient (TP, soluble reactive phosphorus and NO3-) levels, TSS, phytoplankton Chl a, benthic algal Chl a, or light intensity on the sediment surface between ZM, QM and ZQ treatments. These results confirm the strong effect of both mussel species on water clarity and indicate that the displacement of zebra mussel by an equivalent biomass of quagga mussel is not likely to lead to further increases in water clarity, at least for the limnological conditions, including summer temperature, tested in this experiment.

Will the Displacement of Zebra Mussels by Quagga Mussels Increase Water Clarity in Shallow Lakes during Summer? Results from a Mesocosm Experiment

PubMed Central

Kassam, Sinan-Saleh; Rudstam, Lars G.

2016-01-01

Zebra mussels (Dreissena polymorpha) are known to increase water clarity and affect ecosystem processes in invaded lakes. During the last decade, the conspecific quagga mussels (D. rostriformis bugensis) have displaced zebra mussels in many ecosystems including shallow lakes such as Oneida Lake, New York. In this study, an eight-week mesocosm experiment was conducted to test the hypothesis that the displacement of zebra mussels by quagga mussels leads to further decreases in phytoplankton and increases in water clarity resulting in increases in benthic algae. We found that the presence of zebra mussels alone (ZM), quagga mussels alone (QM), or an equal number of both species (ZQ) reduced total phosphorus (TP) and phytoplankton Chl a. Total suspended solids (TSS) was reduced in ZM and ZQ treatments. Light intensity at the sediment surface was higher in all three mussel treatments than in the no-mussel controls but there was no difference among the mussel treatments. There was no increase in benthic algae biomass in the mussel treatments compared with the no-mussel controls. Importantly, there was no significant difference in nutrient (TP, soluble reactive phosphorus and NO3-) levels, TSS, phytoplankton Chl a, benthic algal Chl a, or light intensity on the sediment surface between ZM, QM and ZQ treatments. These results confirm the strong effect of both mussel species on water clarity and indicate that the displacement of zebra mussel by an equivalent biomass of quagga mussel is not likely to lead to further increases in water clarity, at least for the limnological conditions, including summer temperature, tested in this experiment. PMID:28005940

Influence of Sedimentary and Seagrass Microbial Communities on Shallow-Water Benthic Optical Properties

DTIC Science & Technology

2008-09-30

grass, Thalassia testudinum) and in Monterey Bay (eel grass, Zostera marina). Assess how the microbial community affects the flux of photons to and...optical properties and photosynthetic potential of the seagrasses Thalassia testudinum and Zostera marina”. The manuscript will be submitted to the...crystals in Thalassia from LSI. We have pursued this serendipitous discovery, and at the Estuarine Research Federation meeting this fall, we will

The natural diet of a hexactinellid sponge: Benthic pelagic coupling in a deep-sea microbial food web

NASA Astrophysics Data System (ADS)

Pile, Adele J.; Young, Craig M.

2006-07-01

Dense communities of shallow-water suspension feeders are known to sidestep the microbial loop by grazing on ultraplankton at its base. We quantified the diet, rates of water processing, and abundance of the deep-sea hexactinellid sponge Sericolophus hawaiicus, and found that, like their demosponge relatives in shallow water, hexactinellids are a significant sink for ultraplankton. S. hawaiicus forms a dense bed of sponges on the Big Island of Hawaii between 360 and 460 m depth, with a mean density of 4.7 sponges m -2. Grazing of S. hawaiicus on ultraplankton was quantified from in situ samples using flow cytometry, and was found to be unselective. Rates of water processing were determined with dye visualization and ranged from 1.62 to 3.57 cm s -1, resulting in a processing rate of 7.9±2.4 ml sponge -1 s -1. The large amount of water processed by these benthic suspension feeders results in the transfer of approximately 55 mg carbon and 7.3 mg N d -1 m -2 from the water column to the benthos. The magnitude of this flux places S. hawaiicus squarely within the functional group of organisms that link the pelagic microbial food web to the benthos.

Biostratigraphy, paleoenvironment and foraminiferal associations of the Rupelian-Chattian sediments in Zagros Basin, SW Iran

NASA Astrophysics Data System (ADS)

Habibi, Tahereh

2016-11-01

In this research larger benthic foraminiferal distribution and their paleoenvironmental characteristics are used to introduce biostratigraphic zonation, paleoenvironmental reconstruction and paleoecological interpretation of the Oligocene Asmari Formation in Fars Province. Two stratigraphic successions were examined for these purposes. The first (Khollar Section) is Rupelian in age and the second (Siakh Section) is of Chattian age. Recognized assemblage zones are: 1-Nummulites vascus-Nummulites fichteli and 2- Archaias asmaricus/hensoni-Miogypsinoides complanatus. Four microfacies types are identified according to the occurrence of the main biogenic components. They were arranged along the inner part of a carbonate platform. A shallowing upward trend in microfacies arrangement from Rupelian to Chattian times is considered according to the occurrence of larger benthic foraminifera. Two foraminiferal associations are recognized in the investigated sections. The identified foraminiferal associations represent a salinity value of 40-50 psu and a depth range of lower than 40 m, warm tropical and subtropical waters with temperature of 18-25 °C at Rupelian time. More restricted conditions through Chattian Stage has resulted in a shallower depth and higher salinity of more than 50 psu, with water temperature being higher than 20 °C in the oligotrophic to mesotrophic conditions. Restricted conditions in marine circulation is suggested to have controlled these associations.

Contribution of sea ice microbial production to Antarctic benthic communities is driven by sea ice dynamics and composition of functional guilds.

PubMed

Wing, Stephen R; Leichter, James J; Wing, Lucy C; Stokes, Dale; Genovese, Sal J; McMullin, Rebecca M; Shatova, Olya A

2018-04-28

Organic matter produced by the sea ice microbial community (SIMCo) is an important link between sea ice dynamics and secondary production in near-shore food webs of Antarctica. Sea ice conditions in McMurdo Sound were quantified from time series of MODIS satellite images for Sept. 1 through Feb. 28 of 2007-2015. A predictable sea ice persistence gradient along the length of the Sound and evidence for a distinct change in sea ice dynamics in 2011 were observed. We used stable isotope analysis (δ 13 C and δ 15 N) of SIMCo, suspended particulate organic matter (SPOM) and shallow water (10-20 m) macroinvertebrates to reveal patterns in trophic structure of, and incorporation of organic matter from SIMCo into, benthic communities at eight sites distributed along the sea ice persistence gradient. Mass-balance analysis revealed distinct trophic architecture among communities and large fluxes of SIMCo into the near-shore food web, with the estimates ranging from 2 to 84% of organic matter derived from SIMCo for individual species. Analysis of patterns in density, and biomass of macroinvertebrate communities among sites allowed us to model net incorporation of organic matter from SIMCo, in terms of biomass per unit area (g/m 2 ), into benthic communities. Here, organic matter derived from SIMCo supported 39 to 71 per cent of total biomass. Furthermore, for six species, we observed declines in contribution of SIMCo between years with persistent sea ice (2008-2009) and years with extensive sea ice breakout (2012-2015). Our data demonstrate the vital role of SIMCo in ecosystem function in Antarctica and strong linkages between sea ice dynamics and near-shore secondary productivity. These results have important implications for our understanding of how benthic communities will respond to changes in sea ice dynamics associated with climate change and highlight the important role of shallow water macroinvertebrate communities as sentinels of change for the Antarctic marine ecosystem. © 2018 John Wiley & Sons Ltd.

Ecosystem dynamics of the Pacific-influenced Northern Bering and Chukchi Seas in the Amerasian Arctic

NASA Astrophysics Data System (ADS)

Grebmeier, Jacqueline M.; Cooper, Lee W.; Feder, Howard M.; Sirenko, Boris I.

2006-10-01

The shallow continental shelves and slope of the Amerasian Arctic are strongly influenced by nutrient-rich Pacific waters advected over the shelves from the northern Bering Sea into the Arctic Ocean. These high-latitude shelf systems are highly productive both as the ice melts and during the open-water period. The duration and extent of seasonal sea ice, seawater temperature and water mass structure are critical controls on water column production, organic carbon cycling and pelagic-benthic coupling. Short food chains and shallow depths are characteristic of high productivity areas in this region, so changes in lower trophic levels can impact higher trophic organisms rapidly, including pelagic- and benthic-feeding marine mammals and seabirds. Subsistence harvesting of many of these animals is locally important for human consumption. The vulnerability of the ecosystem to environmental change is thought to be high, particularly as sea ice extent declines and seawater warms. In this review, we focus on ecosystem dynamics in the northern Bering and Chukchi Seas, with a more limited discussion of the adjoining Pacific-influenced eastern section of the East Siberian Sea and the western section of the Beaufort Sea. Both primary and secondary production are enhanced in specific regions that we discuss here, with the northern Bering and Chukchi Seas sustaining some of the highest water column production and benthic faunal soft-bottom biomass in the world ocean. In addition, these organic carbon-rich Pacific waters are periodically advected into low productivity regions of the nearshore northern Bering, Chukchi and Beaufort Seas off Alaska and sometimes into the East Siberian Sea, all of which have lower productivity on an annual basis. Thus, these near shore areas are intimately tied to nutrients and advected particulate organic carbon from the Pacific influenced Bering Shelf-Anadyr water. Given the short food chains and dependence of many apex predators on sea ice, recent reductions in sea ice in the Pacific-influenced sector of the Arctic have the potential to cause an ecosystem reorganization that may alter this benthic-oriented system to one more dominated by pelagic processes.

Time- and depth-wise trophic niche shifts in Antarctic benthos.

PubMed

Calizza, Edoardo; Careddu, Giulio; Sporta Caputi, Simona; Rossi, Loreto; Costantini, Maria Letizia

2018-01-01

Climate change is expected to affect resource-consumer interactions underlying stability in polar food webs. Polar benthic organisms have adapted to the marked seasonality characterising their habitats by concentrating foraging and reproductive activity in summer months, when inputs from sympagic and pelagic producers increase. While this enables the persistence of biodiverse food webs, the mechanisms underlying changes in resource use and nutrient transfer are poorly understood. Thus, our understanding of how temporal and spatial variations in the supply of resources may affect food web structure and functioning is limited. By means of C and N isotopic analyses of two key Antarctic benthic consumers (Adamussium colbecki, Bivalvia, and Sterechinus neumayeri, Echinoidea) and Bayesian mixing models, we describe changes in trophic niche and nutrient transfer across trophic levels associated with the long- and short-term diet and body size of specimens sampled in midsummer in both shallow and deep waters. Samplings occurred soon after the sea-ice broke up at Tethys Bay, an area characterised by extreme seasonality in sea-ice coverage and productivity in the Ross Sea. In the long term, the trophic niche was broader and variation between specimens was greater, with intermediate-size specimens generally consuming a higher number of resources than small and large specimens. The coupling of energy channels in the food web was consequently more direct than in the short term. Sediment and benthic algae were more frequently consumed in the long term, before the sea-ice broke up, while consumers specialised on sympagic algae and plankton in the short term. Regardless of the time scale, sympagic algae were more frequently consumed in shallow waters, while plankton was more frequently consumed in deep waters. Our results suggest a strong temporal relationship between resource availability and the trophic niche of benthic consumers in Antarctica. Potential climate-driven changes in the timing and quality of nutrient inputs may have profound implications for the structure of polar food webs and the persistence of their constituent species, which have adapted their trophic niches to a highly predictable schedule of resource inputs.

Time- and depth-wise trophic niche shifts in Antarctic benthos

PubMed Central

Calizza, Edoardo; Careddu, Giulio; Sporta Caputi, Simona; Costantini, Maria Letizia

2018-01-01

Climate change is expected to affect resource-consumer interactions underlying stability in polar food webs. Polar benthic organisms have adapted to the marked seasonality characterising their habitats by concentrating foraging and reproductive activity in summer months, when inputs from sympagic and pelagic producers increase. While this enables the persistence of biodiverse food webs, the mechanisms underlying changes in resource use and nutrient transfer are poorly understood. Thus, our understanding of how temporal and spatial variations in the supply of resources may affect food web structure and functioning is limited. By means of C and N isotopic analyses of two key Antarctic benthic consumers (Adamussium colbecki, Bivalvia, and Sterechinus neumayeri, Echinoidea) and Bayesian mixing models, we describe changes in trophic niche and nutrient transfer across trophic levels associated with the long- and short-term diet and body size of specimens sampled in midsummer in both shallow and deep waters. Samplings occurred soon after the sea-ice broke up at Tethys Bay, an area characterised by extreme seasonality in sea-ice coverage and productivity in the Ross Sea. In the long term, the trophic niche was broader and variation between specimens was greater, with intermediate-size specimens generally consuming a higher number of resources than small and large specimens. The coupling of energy channels in the food web was consequently more direct than in the short term. Sediment and benthic algae were more frequently consumed in the long term, before the sea-ice broke up, while consumers specialised on sympagic algae and plankton in the short term. Regardless of the time scale, sympagic algae were more frequently consumed in shallow waters, while plankton was more frequently consumed in deep waters. Our results suggest a strong temporal relationship between resource availability and the trophic niche of benthic consumers in Antarctica. Potential climate-driven changes in the timing and quality of nutrient inputs may have profound implications for the structure of polar food webs and the persistence of their constituent species, which have adapted their trophic niches to a highly predictable schedule of resource inputs. PMID:29570741

Response of Benthic Microalgae to Phosphorus Inputs in Grand Bay National Estuarine Research Reserve

NASA Astrophysics Data System (ADS)

Sleek, J.; Caffrey, J. M.; Baine, G. C., II; Capps, R.

2016-12-01

Benthic microalgae are an important, but often understudied component of shallow, photic estuaries in the Gulf of Mexico. Grand Bay National Estuarine Research Reserve (GBNERR) is located in a small and relatively pristine estuary in the northern Gulf of Mexico. Freshwater input into the estuary is primarily local runoff from bayous and tidal creeks, including Bayou Cumbest, Bayou Heron, and Bangs Lake. Nutrient loading to Grand Bay is relatively small, with ambient nutrient concentrations often below detection. However, several events in 2005, 2012, 2013, and 2014 due to breaches in a containment levee from a gypsum stack have led to high phosphate levels near Bangs Lake. GBNERR staff assembled a phosphate working group to investigate scientific questions related to these phosphate loadings. This working group includes members from GBNERR, regional universities, marine labs, and Mississippi Department of Environmental Quality. In marine ecosystems, nitrogen availability normally limits growth of phytoplankton and previous research has shown this to be the case in Grand Bay. However, little is known about benthic microalgae in Grand Bay and what their response is to these phosphorus inputs. Between 2013 and 2015, summer concentrations of water column and benthic chlorophyll a were positively correlated, with the highest concentrations occurring in Bangs Lake. Benthic chlorophyll was also positively correlated with the percent surface irradiance reaching the bottom. Bottom light levels range from 3 to 36% surface irradiance. This along with experiments that showed no enhancement of growth of benthic microalgae following addition of nutrients (ammonium, phosphate or both) suggest that benthic microalgae are predominantly light limited rather than nutrient limited. Preliminary nitrogen fixation measurements suggest that nitrogen fixation was positively correlated with extractable phosphate concentrations. Thus, enhanced sediment nitrogen fixation and excess phosphate from the fertilizer plant runoff in this high light environment may enhance benthic microalgal production. The results of this research are part of the larger effort by the phosphate working group to understand the impact of repeated phosphate impacts. These results will provide information needed to help manage the reserve.

Response of Benthic Microalgae to Phosphorus Inputs in Grand Bay National Estuarine Research Reserve

NASA Astrophysics Data System (ADS)

Sleek, J.; Caffrey, J. M.; Baine, G. C., II; Capps, R.

2016-02-01

Benthic microalgae are an important, but often understudied component of shallow, photic estuaries in the Gulf of Mexico. Grand Bay National Estuarine Research Reserve (GBNERR) is located in a small and relatively pristine estuary in the northern Gulf of Mexico. Freshwater input into the estuary is primarily local runoff from bayous and tidal creeks, including Bayou Cumbest, Bayou Heron, and Bangs Lake. Nutrient loading to Grand Bay is relatively small, with ambient nutrient concentrations often below detection. However, several events in 2005, 2012, 2013, and 2014 due to breaches in a containment levee from a gypsum stack have led to high phosphate levels near Bangs Lake. GBNERR staff assembled a phosphate working group to investigate scientific questions related to these phosphate loadings. This working group includes members from GBNERR, regional universities, marine labs, and Mississippi Department of Environmental Quality. In marine ecosystems, nitrogen availability normally limits growth of phytoplankton and previous research has shown this to be the case in Grand Bay. However, little is known about benthic microalgae in Grand Bay and what their response is to these phosphorus inputs. Between 2013 and 2015, summer concentrations of water column and benthic chlorophyll a were positively correlated, with the highest concentrations occurring in Bangs Lake. Benthic chlorophyll was also positively correlated with the percent surface irradiance reaching the bottom. Bottom light levels range from 3 to 36% surface irradiance. This along with experiments that showed no enhancement of growth of benthic microalgae following addition of nutrients (ammonium, phosphate or both) suggest that benthic microalgae are predominantly light limited rather than nutrient limited. Preliminary nitrogen fixation measurements suggest that nitrogen fixation was positively correlated with extractable phosphate concentrations. Thus, enhanced sediment nitrogen fixation and excess phosphate from the fertilizer plant runoff in this high light environment may enhance benthic microalgal production. The results of this research are part of the larger effort by the phosphate working group to understand the impact of repeated phosphate impacts. These results will provide information needed to help manage the reserve.

Increased benthic grazing: An alternative explanation for low phytoplankton biomass in northern San Francisco Bay during the 1976-1977 drought

USGS Publications Warehouse

Nichols, F.H.

1985-01-01

Among the consequences of extremely low river flow into northern San Francisco Bay during a two-year drought were (1) a gradual increase in salinity, (2) an unusual decline in chlorophyll a concentration, and (3) the upstream migration of estuarine benthic invertebrates to the normally brackish area of the bay. Total abundance in the benthos at a shallow monitoring site increased from a normal 2000 to greater than 20 000 individuals m-2 during the summer of 1977, presumably in response to the increased salinity. Estimated filtration rates derived from equations in the literature for one of the species, the suspended-feeding bivalve Mya arenaria ranged from 1 to 4 m3 m-2 day-1 during 1977 depending on abundance and mean size on sampling dates. Because water depth at this site is less than 2 m, Mya could have filtered all of the particles (including diatoms) from the water column on the order of once per day. Several other immigrant species undoubtedly contributed to the removal of particles from the near-bottom water as well. Increased benthic grazing, therefore, could have accounted for the anomalously low phytoplankton biomass observed during the drought. These results suggest that during periods of prolonged low river flow and increased salinity benthic food webs could become more important than planktonic food webs in the upper part of the estuary. ?? 1985.

Foraminiferal signatures of mass transport from the North-West Continental Shelf off Western Australia, IODP Expedition 356

NASA Astrophysics Data System (ADS)

Mamo, B. L.; McHugh, C.; Renema, W.; Gallagher, S. J.; Fulthorpe, C.; Bogus, K.

2017-12-01

In 2015, International Ocean Discovery Program Expedition 356 cored a transect along the margin off Western Australian to investigate the history of the Indonesian Throughflow (ITF) and its integral role in the development of global thermohaline circulation and climate. Throughout the expedition, a suite of foraminiferal analyses were employed wherein an incredibly diverse benthic fauna ( 260 species) was used to reveal palaeo-water depth, palaeobathymetric setting and variable conditions at the sediment-water interface. Benthic foraminiferal biofacies are particularly sensitive to changes in environmental conditions, have a rapid turnover and are ideal proxies for monitoring physical and chemical changes in marine environments. When this information is combined with lithostratigraphic and other microfossil data, a robust understanding of past environments and past geological events can be reconstructed. Shipboard data were used to isolate horizons of interest for more intense sampling at Site U1461, situated on the Northwest Shelf (127 m water depth). The shipboard data revealed a large ( 150 m-thick) turbidite horizon hosting benthic foraminifera from a substantially shallower water depth than the horizon immediately preceding. We present preliminary foraminiferal results combined with shipboard sedimentological descriptions to better constrain the deposit's occurrence in the biostratigraphic record, use benthic foraminifera to elucidate the deposit's sedimentary origins and link this event with others in the region to investigate potential catalysts for its deposition.

Historical macrobenthic community assemblages in the Avilés Canyon, N Iberian Shelf: Baseline biodiversity information for a marine protected area

NASA Astrophysics Data System (ADS)

Louzao, Maite; Anadón, Nuria; Arrontes, Julio; Álvarez-Claudio, Consuelo; Fuente, Dulce María; Ocharan, Francisco; Anadón, Araceli; Acuña, José Luis

2010-02-01

Deep-sea ecosystems are highly diverse, and European countries seek to protect these environments by identifying conservation targets. One of these is the Avilés Canyon, southern Bay of Biscay, NE Atlantic, Spain. We present the first analysis of historical benthic communities (1987-1988) of this canyon ecosystem, which is a valuable source of biodiversity baseline information. We found 810 taxa divided in five main macrobenthic assemblages, showing a highly diverse benthic community. Bathymetry was the major structuring agent of benthic community, separating shallow (assemblages I and II, 31 to 307 m depth) from deep stations (assemblages III, IV and V, 198 to 1400 m depth). Especially diverse was assemblage IV, located at the easternmost part of the continental slope (378-1100 m depth) where we found reef-forming corals Lophelia pertusa and Madrepora oculata. These and other communities (sea-pens [Order Pennatulacea, Phylum Cnidaria] and burrowing macrofauna) represent key habitats in NE Atlantic continental slopes, which are currently threatened. The present dataset has produced the most comprehensive assessment of diversity in this area to date, focusing on the taxonomic groups which may best reflect the health of the marine ecosystem and supporting previous studies which indicate that the continental slope of the southern Bay of Biscay hosts key benthic habitats.

[Species of dinoflagellates of the genus Gambierdiscus (Dinophyceae) in the Mexican Caribbean Sea].

PubMed

Hernández-Becerril, D U; Almazán Becerril, A

2004-09-01

Some dinoflagellates with benthic habits are related to ciguatera intoxication by fish consumption, especially in tropical areas. In the Mexican Caribbean, ciguatera is relatively common, but only one paper seems to have been published on the subject, and there are very few publicactions on phytoplankton and benthic microalgae. Material collected along the coast of the State of Quintana Roo with phytoplankton net (54 mm) and directly from sediment and epiphytes of macroscopic plants, was searched for toxic and other associated dinoflagellates. Samples were studied by light and scanning electron microscopy. Morphological characters were useful for species identification, but eventually physiological, ecological and molecular characters could also be used. Three species of Gambierdiscus, related to the production of ciguatera toxins, were identified: G. belizeanus, G. toxicus and G. yasumotoi. They are distributed in shallow coastal areas, including coastal lagoons.

Seafloor habitat mapping and classification in Glacier Bay, Alaska: Phase 1 & 2 1996-2004

USGS Publications Warehouse

Hooge, Philip N.; Carlson, Paul R.; Mondragon, Jennifer; Etherington, Lisa L.; Cochran, G.R.

2004-01-01

Glacier Bay is a diverse fjord ecosystem with multiple sills, numerous tidewater glaciers and a highly complex oceanographic system. The Bay was completely glaciated prior to the 1700’s and subsequently experienced the fastest glacial retreat recorded in historical times. Currently, some of the highest sedimentation rates ever observed occur in the Bay, along with rapid uplift (up to 2.5 cm/year) due to a combination of plate tectonics and isostatic rebound. Glacier Bay is the second deepest fjord in Alaska, with depths over 500 meters. This variety of physical processes and bathymetry creates many diverse habitats within a relatively small area (1,255 km2 ). Habitat can be defined as the locality, including resources and environmental conditions, occupied by a species or population of organisms (Morrison et al 1992). Mapping and characterization of benthic habitat is crucial to an understanding of marine species and can serve a variety of purposes including: understanding species distributions and improving stock assessments, designing special management areas and marine protected areas, monitoring and protecting important habitats, and assessing habitat change due to natural or human impacts. In 1996, Congress recognized the importance of understanding benthic habitat for fisheries management by reauthorizing the Magnuson-Stevens Fishery Conservation and Management Act and amending it with the Sustainable Fisheries Act (SFA). This amendment emphasizes the importance of habitat protection to healthy fisheries and requires identification of essential fish habitat in management decisions. Recently, the National Park Service’s Ocean Stewardship Strategy identified the creation of benthic habitat maps and sediment maps as crucial components to complete basic ocean park resource inventories (Davis 2003). Glacier Bay National Park managers currently have very limited knowledge about the bathymetry, sediment types, and various marine habitats of ecological importance in the Park. Ocean floor bathymetry and sediment type are the building blocks of marine communities. Bottom type and shape affects the kinds of benthic communities that develop in a particular environment as well as the oceanographic conditions that communities are subject to. Accurate mapping of the ocean floor is essential for park manager’s understanding of existing marine communities and will be important in assessing human induced changes (e.g., vessel traffic and commercial fishing), biological change (e.g., rapid sea otter recolonization), and geological processes of change (e.g., deglaciation). Information on animal-habitat relationships, particularly within a marine reserve framework, will be valuable to agencies making decisions about critical habitats, marine reserve design, as well as fishery management. Identification and mapping of benthic habitat provides National Park Service mangers with tools to increase the effectiveness of resource management. The primary objective of this project is to investigate the geological characteristics of the biological habitats of halibut, Dungeness crab, king crab, and Tanner crab within Glacier Bay National Park. Additionally, habitat classification of shallow water regions of Glacier Bay will provide crucial information on the relationship between benthic habitat features and the abundance of benthic prey items for a variety of marine predators, including sea ducks, the rapidly increasing population of sea otters, and other marine mammals. 

Neogene paleoceanographic events recorded in an active-margin setting: Humboldt basin, California

USGS Publications Warehouse

McCrory, P.A.

1990-01-01

Recognition of North Pacific paleoceanographic events in the marginal Humboldt (Eel River) basin of northern California enables correlation of stratigraphic sections and development of a chronostratigraphy. Paleoclimatically related coiling shifts in Neogloboquadrina pachyderma (Ehrenberg) and benthic foraminiferal datums form the basis of the chronostratigraphy. Benthic foraminiferal datums are defined by the occurrence of selected benthic species and abundance maxima of benthic biofacies. The compiled chronostratigraphy is used to refine reconstructions of the depositional history of Humboldt basin. Paleoceanographic events, recognized by the distribution of benthic foraminiferal biofacies, are used to infer paleoceanographic history along the northeastern Pacific margin. The similarity in coiling curves of N. pachyderma from the marine sequence at DSDP Site 173 and the coastal Centerville Beach section of Humboldt basin and at other independently dated sites along the northeastern Pacific margin demonstrates that matching records of climatic oscillations is a reliable method of correlating marine sequences. Benthic fauna from the Centerville Beach section vary in phase with climatically related coiling shifts in N. pachyderma. In particular these data show an increase in displaced neritic fauna during inferred warm intervals and resurgence of deeper bathyal fauna during inferred cool events. Similar data are observed from the inland Eel River section, demonstrating that benthic foraminiferal trends recognized at Centerville Beach can be identified elsewhere in Humboldt basin. This in-phase benthic response to climatic fluctuations probably results from changes in vertical depth range of many benthic species in response to paleoclimatically related vertical changes in water-mass position. Depositional histories reconstructed for two key sites in southern Humboldt basin indicate low rates of sediment accumulation during early basin filling with hemipelagic sediments. Initiation of turbidite sedimentation in the early Pliocene resulted in a sharp increase in rate of sediment accumulation. This increase in rate of sediment accumulation is partially a response to tectonic uplift in the northern Coast Ranges and may be an effect of realignment of motion between the Pacific and North American plates at about this time. The inland site shoaled more rapidly during turbidite sedimentation as a result of a higher rate of sediment accumulation. The rate of sediment accumulation increased again at this site in the late Pliocene during deposition of shelf and nearshore facies. The Eel River region subsided concurrent with deposition of these shallow-water deposits. ?? 1990.

Changes in depth occupied by Great Lakes lake whitefish populations and the influence of survey design

USGS Publications Warehouse

Rennie, Michael D.; Weidel, Brian C.; Claramunt, Randall M.; Dunlob, Erin S.

2015-01-01

Understanding fish habitat use is important in determining conditions that ultimately affect fish energetics, growth and reproduction. Great Lakes lake whitefish (Coregonus clupeaformis) have demonstrated dramatic changes in growth and life history traits since the appearance of dreissenid mussels in the Great Lakes, but the role of habitat occupancy in driving these changes is poorly understood. To better understand temporal changes in lake whitefish depth of capture (Dw), we compiled a database of fishery-independent surveys representing multiple populations across all five Laurentian Great Lakes. By demonstrating the importance of survey design in estimating Dw, we describe a novel method for detecting survey-based bias in Dw and removing potentially biased data. Using unbiased Dw estimates, we show clear differences in the pattern and timing of changes in lake whitefish Dw between our reference sites (Lake Superior) and those that have experienced significant benthic food web changes (lakes Michigan, Huron, Erie and Ontario). Lake whitefish Dw in Lake Superior tended to gradually shift to shallower waters, but changed rapidly in other locations coincident with dreissenid establishment and declines in Diporeia densities. Almost all lake whitefish populations that were exposed to dreissenids demonstrated deeper Dw following benthic food web change, though a subset of these populations subsequently shifted to more shallow depths. In some cases in lakes Huron and Ontario, shifts towards more shallow Dw are occurring well after documented Diporeia collapse, suggesting the role of other drivers such as habitat availability or reliance on alternative prey sources.

Trace-fossil assemblages with a new ichnogenus in "spotted"

NASA Astrophysics Data System (ADS)

Šimo, Vladimír; Tomašových, Adam

2013-10-01

Highly-bioturbated "spotted" limestones and marls (Fleckenmergel-Fleckenkalk facies) of the Early Jurassic, which were deposited in broad and recurrent deep-shelf habitats of the Northern Tethys, are characterized by rare benthic carbonate-producing macroinvertebrates. To address this paradox, we analyse trace-fossil assemblages in a ~85 m-thick succession of Pliensbachian spotted deposits (Zliechov Basin, Western Carpathians). They are dominated by infaunal and semi-infaunal deposit-feeders, with 9 ichnogenera and pyritized tubes of the semi-infaunal foraminifer Bathysiphon, being dominated by Chondrites, Lamellaeichnus (new ichnogenus), and Teichichnus. Lamellaeichnus, represented by a horizontal basal cylindrical burrow and an upper row of stacked convex-up gutters, was produced by a mobile deposit-feeder inhabiting shallow tiers because it is crossed by most other trace fossils. We show that the spotty appearance of the deposits is generated by a mixture of (1) dark, organic-rich shallow- and deep-tier traces (TOC = 0.16-0.36), and (2) light grey, organic-poor mottled or structurless sediment (TOC = 0.09-0.22). The higher TOC in shallow-tier burrows of Lamellaeichnus demonstrates that uppermost sediment layers were affected by poor redox cycling. Such conditions imply a limited mixed-layer depth and inefficient nutrient recycling conditioned by hypoxic bottom-waters, allowed by poor circulation and high sedimentation rates in depocenters of the Zliechov Basin. Hypoxic conditions are further supported by (1) dominance of trace-fossils produced by infaunal deposit feeders, (2) high abundance of hypoxiatolerant agglutinated foraminifer Bathysiphon, and (3) high abundance of Chondrites with ~0.5 mm-sized branches. Oxygen-deficient bottom-conditions can thus simultaneously explain the rarity of benthic carbonate-producing macroinvertebrates and high standing abundance of tolerant soft-shell and agglutinated organisms in spotted deposits.

Morphological divergence between three Arctic charr morphs - the significance of the deep-water environment.

PubMed

Skoglund, Sigrid; Siwertsson, Anna; Amundsen, Per-Arne; Knudsen, Rune

2015-08-01

Morphological divergence was evident among three sympatric morphs of Arctic charr (Salvelinus alpinus (L.)) that are ecologically diverged along the shallow-, deep-water resource axis in a subarctic postglacial lake (Norway). The two deep-water (profundal) spawning morphs, a benthivore (PB-morph) and a piscivore (PP-morph), have evolved under identical abiotic conditions with constant low light and temperature levels in their deep-water habitat, and were morphologically most similar. However, they differed in important head traits (e.g., eye and mouth size) related to their different diet specializations. The small-sized PB-morph had a paedomorphic appearance with a blunt head shape, large eyes, and a deep body shape adapted to their profundal lifestyle feeding on submerged benthos from soft, deep-water sediments. The PP-morph had a robust head, large mouth with numerous teeth, and an elongated body shape strongly related to their piscivorous behavior. The littoral spawning omnivore morph (LO-morph) predominantly utilizes the shallow benthic-pelagic habitat and food resources. Compared to the deep-water morphs, the LO-morph had smaller head relative to body size. The LO-morph exhibited traits typical for both shallow-water benthic feeding (e.g., large body depths and small eyes) and planktivorous feeding in the pelagic habitat (e.g., streamlined body shape and small mouth). The development of morphological differences within the same deep-water habitat for the PB- and PP-morphs highlights the potential of biotic factors and ecological interactions to promote further divergence in the evolution of polymorphism in a tentative incipient speciation process. The diversity of deep-water charr in this study represents a novelty in the Arctic charr polymorphism as a truly deep-water piscivore morph has to our knowledge not been described elsewhere.

Living (Rose-Bengal-Stained) benthic foraminifera along the Kveithola Trough (NW Barents Sea), environmental implications

NASA Astrophysics Data System (ADS)

Sabbatini, Anna; Morigi, Caterina; Lucchi, Renata G.; de Vittor, Cinzia; Bazzano, Matteo

2017-04-01

The distribution and composition of benthic foraminiferal fauna in the Kveithola Trough (NW Barents Sea) were studied in three depositional settings identified on the basis of surface depositional structures, sediment types and present ecosystem characteristics. Sediment samples were collected during the CORIBAR cruise (Hanebuth et al., 2013) aimed at drilling glacigenic sediments in a palaeo-ice stream depositional system in the western Barents Sea. In particular, we report the quantitative data of the living benthic foraminiferal density, biodiversity and vertical distribution in three box-core sediment samples (0-10 cm) collected in two inner trough sites, the drift area and the channel/fault area and one outer shelf site. Rose-Bengal-stained foraminiferal assemblages were investigated from two different size fractions (63-150 and >150 micrometres). In the drift area, the living benthic foraminiferal assemblage is characterized by the presence of oxygen-depleted environmental taxa with low foraminiferal density and biodiversity. This area appears a stagnant environment, strongly affected by low-oxygen, stressed environmental conditions in which foraminifera developed a life strategy aimed to increase the efficiency of food utilization and maximum resistance to ecological stress. As a further support to this interpretation, all the sediments recovered in the drift area are rich in organic matter and in Siboglinid-like tubes together with pockmark evidences on the surface of the box-corer. The sedimentation in the channel/fault area is very similar to that described for the drift area, evidencing stressed environmental conditions. Opportunistic species dominate the benthic foraminiferal fauna. The species distribution of the internal trough sites is consistent with the lithology and with data of quantity and biochemical composition (in terms of phytopigment, protein, lipid, carbohydrate and biopolymeric carbon) of the organic matter. Values of biopolymeric carbon are typical of eutrophic setting and the presence of tolerant low oxygen condition species as Nonionellina labradorica, Nonionella iridea and Fursenkoina fusiformis suggests that the sediment is dysoxic. In the inner part of the trough, the presence of Leptohalysis scottii and the decreasing of N. labradorica could indicate the presence of organic carbon input with higher nutritional quality, probably due to the shallower depth of the station (151 m water depth). The site corresponding to the outer shelf is characterized by the presence of diverse and abundant benthic foraminiferal assemblage suggesting a high oxygenated and mesotrophic environment. The sedimentological evidences characterized by clean sand with large-scale ripple-like features suggest the presence of moderately strong, and persistent bottom currents. We notice in all sites the presence of delicate monothalamous taxa (organic-walled allogromiids, agglutinated saccamminids, psammosphaerids and tubular forms). Therefore, preliminary faunal and sedimentological data allow to describe sediments of the Kveithola Drift, deposited under persistent dense bottom currents, appears today as a stagnant environment strongly affected by low-oxygen concentration, possibly chemosynthetic conditions with likely ongoing gas seep activity from pockmarks.

Microphytobenthos and benthic macroalgae determine sediment organic matter composition in shallow photic sediments

NASA Astrophysics Data System (ADS)

Hardison, A. K.; Canuel, E. A.; Anderson, I. C.; Tobias, C. R.; Veuger, B.; Waters, M. N.

2013-08-01

Microphytobenthos and benthic macroalgae play an important role in system metabolism within shallow coastal bays. However, their independent and interactive influences on sediment organic matter (SOM) are not well understood. We investigated the influence of macroalgae and microphytobenthos on SOM quantity and quality in an experimental mesocosm system using bulk and molecular level (total hydrolyzable amino acids, THAA; phospholipid linked fatty acids, PLFA; pigment) analyses. Our experiment used an incomplete factorial design made up of two factors, each with two levels: (1) light (ambient vs. dark) and (2) macroalgae (presence vs. absence of live macroalgae). Over the course of the 42-day experiment, total organic carbon (TOC) and total nitrogen (TN) increased under ambient light by 173 ± 14 and 141 ± 7%, respectively, compared to in the dark (78 ± 29 and 39 ± 22%). THAA comprised a substantial fraction of SOM (~ 16% of TOC, 35% of TN) and followed TOC and TN accumulation patterns. Mole percent composition of the THAA pool indicated that SOM was composed of more labile organic material (e.g., L-glutamic acid, phenylalanine) under ambient light conditions while SOM in dark treatments was more degraded, with higher proportions of glycine and D-alanine. PLFA content, which represents viable biomass, made up ~ 1% of TOC and contained high levels of algal fatty acids in the light, particularly PLFA derived from diatoms. In the presence of microphytobenthos (i.e., light and macroalgae treatments), SOM lability increased, resulting in the observed increases in bacterial PLFA concentrations. Macroalgae, which were added to half of the light treatments, decreased SOM accumulation compared to light treatments without macroalgae, with TOC and TN increasing by only 130 ± 32 and 94 ± 24%, respectively. This decrease likely resulted from shading by macroalgae, which reduced production of microphytobenthos. The presence of macroalgae decreased SOM lability as well, which resulted in diminished buildup of bacterial biomass. By the final day of the experiment, principal component analysis revealed that sediment composition in treatments with macroalgae was more similar to dark treatments and less similar to light treatments without macroalgae. Overall, microphytobenthos and benthic macroalgae fundamentally altered SOM quality and quantity, which may have notable ecological consequences for shallow-water systems such as increased hypoxia/anoxia, sulfide accumulation, enhanced mineralization and/or stimulated denitrification.

Comparison of Discrete-return ranging and Full-waveform digitization for Bathymetric Lidar Mapping of a Shallow Water Bay

NASA Astrophysics Data System (ADS)

Starek, M. J.; Fernandez-diaz, J.; Pan, Z.; Glennie, C. L.; Shrestha, R. L.; Gibeaut, J. C.; Singhania, A.

2013-12-01

Researchers with the National Center for Airborne Laser Mapping (NCALM) at the University of Houston (UH) and the Coastal and Marine Geospatial Sciences Lab (CMGL) of the Harte Research Institute at Texas A&M University-Corpus Christi conducted a coordinated airborne and field-based survey of the Redfish Bay State Scientific Area to investigate the capabilities of shallow water bathymetric lidar for benthic mapping. Redfish Bay, located along the middle Texas coast of the Gulf of Mexico, is a state scientific area designated for the purposes of protecting and studying the native seagrasses. The mapped region is very shallow (< 1 m in most locations) and consists of a variety of benthic cover including sandy bottom, oyster reef, subaqueous vegetation, and submerged structures. For this survey, UH acquired high resolution (2.5 shots per square meter) bathymetry data using their new Optech Aquarius 532 nm green lidar. The field survey conducted by CMGL used an airboat to collect in-situ radiometer measurements, GPS position, depth, and ground-truth data of benthic type at over 80 locations within the bay. The return signal of an Aquarius lidar pulse is analyzed in real time by a hardware-based constant fraction discriminator (CFD) to detect returns from the surface and determine ranges (x,y,z points). This approach is commonly called discrete-return ranging, and Aquarius can record up to 4 returns per an emitted laser pulse. In contrast, full-waveform digitization records the incoming energy of an emitted pulse by sampling it at very high-frequency. Post-processing algorithms can then be applied to detect returns (ranges) from the digitized waveform. For this survey, a waveform digitizer was simultaneously operated to record the return waveforms at a rate of 1GHz with 12 bit dynamic range. High-resolution digital elevation models (DEMs) of the topo-bathymetry were derived from the discrete-return and full-waveform data to evaluate the relative and absolute accuracy using the collected ground-truth data. Results of this evaluation will be presented including an overview of the method used to extract peaks from the waveform data. Potential advantages and disadvantages of the different ranging modes in terms of observed accuracy, increased processing load, and information gain will also be discussed.

SWIM: A Semi-Analytical Ocean Color Inversion Algorithm for Optically Shallow Waters

NASA Technical Reports Server (NTRS)

McKinna, Lachlan I. W.; Werdell, P. Jeremy; Fearns, Peter R. C. S.; Weeks, Scarla J.; Reichstetter, Martina; Franz, Bryan A.; Bailey, Sean W.; Shea, Donald M.; Feldman, Gene C.

2014-01-01

In clear shallow waters, light that is transmitted downward through the water column can reflect off the sea floor and thereby influence the water-leaving radiance signal. This effect can confound contemporary ocean color algorithms designed for deep waters where the seafloor has little or no effect on the water-leaving radiance. Thus, inappropriate use of deep water ocean color algorithms in optically shallow regions can lead to inaccurate retrievals of inherent optical properties (IOPs) and therefore have a detrimental impact on IOP-based estimates of marine parameters, including chlorophyll-a and the diffuse attenuation coefficient. In order to improve IOP retrievals in optically shallow regions, a semi-analytical inversion algorithm, the Shallow Water Inversion Model (SWIM), has been developed. Unlike established ocean color algorithms, SWIM considers both the water column depth and the benthic albedo. A radiative transfer study was conducted that demonstrated how SWIM and two contemporary ocean color algorithms, the Generalized Inherent Optical Properties algorithm (GIOP) and Quasi-Analytical Algorithm (QAA), performed in optically deep and shallow scenarios. The results showed that SWIM performed well, whilst both GIOP and QAA showed distinct positive bias in IOP retrievals in optically shallow waters. The SWIM algorithm was also applied to a test region: the Great Barrier Reef, Australia. Using a single test scene and time series data collected by NASA's MODIS-Aqua sensor (2002-2013), a comparison of IOPs retrieved by SWIM, GIOP and QAA was conducted.

A comparison between benthic gillnet and bottom trawl for assessing fish assemblages in a shallow eutrophic lake near the Changjiang River estuary

NASA Astrophysics Data System (ADS)

Li, Yalei; Liu, Qigen; Chen, Liping; Zhao, Liangjie; Wu, Hao; Chen, Liqiao; Hu, Zhongjun

2018-03-01

Two fishing methods including gillnetting and trawling to estimate attributes of fish assemblage were compared in Dianshan Lake from August 2009 to July 2010. Species composition differed significantly between the gears, with four significant contributors in gillnet catches and one in trawl catches. Trawling collected more proportions of benthic species by number and biomass than gillnetting. Size distribution was significantly influenced by fishing technique; gillnetting captured relatively less small-sized fishes and trawling captured less large-sized individuals. Trawling produced species richness closer to the one expected than gillnetting. On the whole, trawl catch was a quadratic polynomial function of gillnet catch and a significantly negative correlation was found between them, both of which varied as different polynomial functions of temperature. However, trawl and gillnet catches were significantly correlated only in one of five month groups. It is concluded that single-gear-based surveys can be misleading in assessments of attributes of fish assemblages, bottom trawling is a more effective gear for assessing fish diversity than benthic gillnetting, and using gillnet catches as an indicator of fish density depends on fishing season in the lake.

The benthic macrofauna from the Lower Maastrichtian chalk of Kronsmoor (northern Germany, Saturn quarry): taxonomic outline and palaeoecologic implications

NASA Astrophysics Data System (ADS)

Engelke, Julia; Esser, Klaus J. K.; Linnert, Christian; Mutterlose, Jörg; Wilmsen, Markus

2016-12-01

The benthic macroinvertebrates of the Lower Maastrichtian chalk of Saturn quarry at Kronsmoor (northern Germany) have been studied taxonomically based on more than 1,000 specimens. Two successive benthic macrofossil assemblages were recognised: the lower interval in the upper part of the Kronsmoor Formation (Belemnella obtusa Zone) is characterized by low abundances of macroinvertebrates while the upper interval in the uppermost Kronsmoor and lowermost Hemmoor formations (lower to middle Belemnella sumensis Zone) shows a high macroinvertebrate abundance (eight times more than in the B. obtusa Zone) and a conspicuous dominance of brachiopods. The palaeoecological analysis of these two assemblages indicates the presence of eight different guilds, of which epifaunal suspension feeders (fixo-sessile and libero-sessile guilds), comprising approximately half of the trophic nucleus of the lower interval, increased to a dominant 86% in the upper interval, including a considerable proportion of rhynchonelliform brachiopods. It is tempting to relate this shift from the lower to the upper interval to an increase in nutrient supply and/or a shallowing of the depositional environment but further data including geochemical proxies are needed to fully understand the macrofossil distribution patterns in the Lower Maastrichtian of Kronsmoor.

Arctic biogeography: The paradox of the marine benthic fauna and flora.

PubMed

Dunton, K

1992-06-01

The marine benthic fauna and flora that inhabit the shallow arctic sublittoral zone comprise a relatively young marine assemblage characterized by species of either Pacific or Atlantic affinity and notably few endemics. The young character of nearshore arctic communities, as well as their biogeographical composition, is largely a product of the Pleistocene glaciation. However, analysis of more recent collections and comparison between the origins of the benthic fauna and flora present some interesting paradoxes to biogeographers. One enigma is the low frequency of algal species with Pacific affinities in the Arctic, especially in the Chukchi, Beaufort and East Siberian Seas of the Eastern Arctic, which receive direct inputs of northward-flowing Pacific waters. In contrast, animal species with Pacific affinities are found throughout the nearshore regions of the Arctic, reaching their highest frequency in the marginal seas between the New Siberian Islands and the Canadian Archipelago. Organization of published and unpublished data, additional field collections, and the use of cladistics and molecular DNA techniques by systematists are a high priority for future research in reconstructing the evolution of the arctic biotic assemblage. Copyright © 1992. Published by Elsevier Ltd.

Diversity of Total Bacterial Communities and Chemoautotrophic Populations in Sulfur-Rich Sediments of Shallow-Water Hydrothermal Vents off Kueishan Island, Taiwan.

PubMed

Wang, Li; Cheung, Man Kit; Liu, Rulong; Wong, Chong Kim; Kwan, Hoi Shan; Hwang, Jiang-Shiou

2017-04-01

Shallow-water hydrothermal vents (HTVs) are an ecologically important habitat with a geographic origin similar to that of deep-sea HTVs. Studies on shallow-water HTVs have not only facilitated understanding of the influences of vents on local ecosystems but also helped to extend the knowledge on deep-sea vents. In this study, the diversity of bacterial communities in the sediments of shallow-water HTVs off Kueishan Island, Taiwan, was investigated by examining the 16S ribosomal RNA gene as well as key functional genes involved in chemoautotrophic carbon fixation (aclB, cbbL and cbbM). In the vent area, Sulfurovum and Sulfurimonas of Epsilonproteobacteria appeared to dominate the benthic bacterial community. Results of aclB gene analysis also suggested involvement of these bacteria in carbon fixation using the reductive tricarboxylic acid (rTCA) cycle. Analysis of the cbbM gene showed that Alphaproteobacterial members such as the purple non-sulfur bacteria were the major chemoautotrophic bacteria involving in carbon fixation via the Calvin-Benson-Bassham (CBB) cycle. However, they only accounted for <2% of the total bacterial community in the vent area. These findings suggest that the rTCA cycle is the major chemoautotrophic carbon fixation pathway in sediments of the shallow-water HTVs off Kueishan Island.

Integrated biostratigraphy and sealevel dynamics at the Santonian - early Campanian Schattau section - Northern Calcareous Alps, Austria

NASA Astrophysics Data System (ADS)

Wolfgring, Erik; Wagreich, Michael

2016-04-01

The Schattau section displays a Santonian to early Campanian transgressive sequence with a rich micro- and macro fossil fauna. A framework based on planktonic foraminifera, calcareous nannoplankton, ammonite, echinoid and crinoid biostratigraphy provides the foundation for a high resolution assessment of palaeoecologic changes in planktonic and benthic foraminiferal communities and local biostratigraphy (see Wagreich et al., 2009). The Santonian Hochmoos Formation (representing shallow water environments with the Sandkalkbank Member at the top of this unit) is overlain by the Santonian to Campanian Bibereck Formation (recording a distinct increase in water depth). The stratigraphically older subsections of the outcrop yield abundant miliolids and some rotaliid foraminiferal taxa (Quinqueloculina sp., Spiroloculina fassistomata, Hoeglundia spp., Gavellina spp.) and the larger benthic foraminifer Nummofallotia cretacea. A transgressive episode is recorded in the uppermost Hochmoos Formation's Sandkalkbank Member - consequently larger benthic foraminifera disappear and miliolids become a rare -, planktonic foraminifera an abundant element in deposits assigning to the stratigraphically youngest part of the Schattau section, the Bibereck Formation. Globotruncanids and marginotruncanids are frequently found. The planktonic/benthic foraminifera ratio rises from zero to ~50%. The benthic foraminiferal fauna is characterised by tubular and bi- and triserial agglutinated foraminifera (e.g. Ammobaculites spp., Dorothia spp., Gaudryina spp., Tritaxia spp.) as well as spiral calcareous benthic foraminifera (Gavellina spp., Lenticulina spp.). Accordingly, the younger deposits at the Schattau section record an outer neritic to upper slope environment. Planctonic foraminifera indicate the Dicarinella asymetrica and the lowest Globotruncanita elevata biozone: The top of the Schattau section records the last appearance of the planktonic foraminifera Dicarinella asymetrica and Sigalia sp. (decoratissima?) - two index fossils for the Santonian, and the first appearance of Globotruncanita elevata. References: Wagreich, M., Summesberger, H., Kroh, A., 2010. Late Santonian bioevents in the Schattau section, Gosau Group of Austria - implications for the Santonian - Campanian boundary stratigraphy. Cretaceous Research, 31, 2, 181-191

Ciliated protists from the nepheloid layer and water column of sites affected by the Deepwater Horizon oil spill in the Northeastern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Moss, Joseph A.; McCurry, Chelsea; Tominack, Sarah; Romero, Isabel C.; Hollander, David; Jeffrey, Wade H.; Snyder, Richard A.

2015-12-01

Benthic marine protists have been well documented from shallow marine benthic habitats but remain understudied in deeper habitats on continental shelves and slopes, particularly in the Northeastern Gulf of Mexico (NEGOM). This region was affected by a deep water oil well failure (BP-Deepwater Horizon, 2010). The combination of a lack of information on deep sea microbenthic communities and the potential for benthic microbial petroleum mineralization prompted this investigation. Water column and nepheloid layer samples were obtained via Niskin bottles and a multicorer respectively at stations across the NEGOM to: (1) determine whether nepheloid and water column communities are distinct and (2) assess benthic species richness relative to sediment PAH contamination. Phylum specific 18S rRNA gene amplification was used to construct clone libraries of ciliate assemblages. BLAST searches in the NCBI database indicated that a majority (~75%) of the clone sequences corresponded (94-100% similarity) with listed, yet unclassified sequences. Several putative species were common at most site locations and depths. Many known benthic ciliates, such as Uronychia transfuga, Uronychia setigera, and Spirotrachelostyla tani, were common in the nepheloid layer samples and not recovered in water column samples. Ciliated protist species richness increased with PAH levels found in surface sediments, suggesting a positive microbial response to petroleum enrichment of the benthos. The presence of previously unknown microbenthic communites in the nephaloid layer over oceanic clay-silt muds alters our view of microbial processes in the deep sea and merits investigation of the microbial processes and rates of microbial mineralization and biomass production important to global biogeochemistry.

Clam dredging effects and subsequent recovery of benthic communities at different depth ranges.

PubMed

Constantino, R; Gaspar, M B; Tata-Regala, J; Carvalho, S; Cúrdia, J; Drago, T; Taborda, R; Monteiro, C C

2009-03-01

This study aimed to assess the potential effects of clam dredging and the subsequent recovery of the benthic environment. Two experimental areas located at 6 and 18m depth were established in order to analyse whether impacts and recovery of benthic environment are depth-related. Study areas were located within an area closed to dredging and two different plots were established at both depths. One of the plots was subjected to intense clam dredge-fishing, while the other was undisturbed and therefore used as control. Sampling followed a BACI design, with samples for macrobenthic, meiobenthic and sediment particle size analysis being taken by SCUBA divers from both areas before and after fishing stress. For both depths, impacts on the benthic environment were very low resulting in high recovery rates. Nevertheless, at shallower depths communities demonstrated a faster recovery. It was shown that depending on the faunal component used as a bioindicator, different results can be observed. Generally deposit-feeding organisms with scales or chitinous plates and vermiform shape (mainly crustaceans, polychaetes and ophiuroids), without external protection, were the most affected by dredging, while some polychaetes without external protection and with a carnivorous feeding mode seemed to be enhanced by fishing. The low level of perturbations induced by the dredging activities was comparable to the impact of surface waves on the bottom, as experiments were undertaken in wave-dominated environments. The coexistence of storm events during the study period proved to have similar or even more deleterious effects on the benthic environment. It appears that communities from hydrodynamic fishing grounds that are well adapted to natural physical stress are not highly affected by dredging.

Dynamic Camouflage in Benthic and Pelagic Cephalopods: An Interdisciplinary Approach to Crypsis Based on Color, Reflection, and Bioluminescence

DTIC Science & Technology

2012-09-30

display a currently valid OMB control number. 1. REPORT DATE 2012 2. REPORT TYPE N/A 3. DATES COVERED - 4. TITLE AND SUBTITLE Dynamic...2. To determine the visual abilities of several species of cephalopod and model both the shallow and deep-water world from the animals’ points...ultrastructure of the reflectin-based structures using transmission electron microscopy and model their optical effects to determine what aspects of

Dynamic Camouflage in Benthic and Pelagic Cephalopods: An Interdisciplinary Approach to Crypsis Based on Color, Reflection, and Bioluminescence

DTIC Science & Technology

2010-01-01

cephalopod and model both the shallow and deep-water world from the animals’ points of view. Report Documentation Page Form ApprovedOMB No...REPORT unclassified b. ABSTRACT unclassified c. THIS PAGE unclassified Standard Form 298 (Rev. 8-98) Prescribed by ANSI Std Z39-18 2 3. To... solar zenith angles including noon and sunset conditions. Five of these deployments were made with the optical sensors oriented horizontally. Ten

Spatial and Diel Variability in Photosynthetic and Photoprotective Pigments in Shallow Benthic Communities

DTIC Science & Technology

2001-09-30

acidification with a Turner 10-000R fluorometer. For phycoerythrin and phycocyanin analysis, the sediments were extracted repeatedly with a phosphate...concentrations varied around 20-fold, phycocyanin varied approximately 70-fold. The highest levels of chlorophylls a and c, and phycocyanin were found in...reflected in the wide range of pigment ratios: 46 for chl c/chl a; 94 for phycoerythrin/chl a; and 27 for phycocyanin /chl a. First derivatives of

Sedimentary facies, geomorphic features and habitat distribution at the Hudson Canyon head from AUV multibeam data

NASA Astrophysics Data System (ADS)

Pierdomenico, Martina; Guida, Vincent G.; Macelloni, Leonardo; Chiocci, Francesco L.; Rona, Peter A.; Scranton, Mary I.; Asper, Vernon; Diercks, Arne

2015-11-01

Mapping of physical benthic habitats at the head of Hudson Canyon was performed by means of integrated analysis of acoustic data, video surveys and seafloor sampling. Acoustic mapping, performed using AUV-mounted multibeam sonar, provided ultra-high resolution bathymetric and backscatter imagery for the identification of geomorphological features and the characterization of surficial sediments. Habitat characterization in terms of seafloor texture and identification of benthic and demersal communities was accomplished by visual analysis of still photographs from underwater vehicles. Habitat classes were defined on the basis of the seafloor texture observed on photos and then compared with the geophysical data in order to associate habitats to acoustic classes and/or geomorphological features. This enabled us to infer habitat distribution on the basis of morpho-acoustic classes and extrapolate results over larger areas. Results from bottom trawling were used to determine the overall biodiversity within the identified habitats. Our analysis revealed a variety of topographic and sedimentological structures that provide a wide range of physical habitats. A variety of sandy and muddy substrates, gravel patches and mudstone outcrops host rich and varied faunal assemblages, including cold-water corals and sponge communities. Pockmark fields below 300 m depth suggest that methane-based chemosynthetic carbonate deposition may contributes to creation of specific benthic habitats. Hummocky terrain has been delineated along the canyon rims and associated with extensive, long-term burrowing activity by golden tilefish (Lopholatilus chamaeleonticeps). These results show the relationships of physical features to benthic habitat variation, support the notion of the area as a biodiversity hotspot and define essential habitats for planning of sustainable regional fisheries.

Untold muddy tales: Paleoenvironmental dynamics of a ``barren'' mudrock succession from a shallow Permian epeiric sea

NASA Astrophysics Data System (ADS)

Simões, M. G.; Matos, S. A.; Warren, L. V.; Assine, M. L.; Riccomini, C.; Bondioli, J. G.

2016-11-01

During the late Paleozoic, the intracratonic Paraná Basin, Brazil, in central Gondwanaland, was covered by a huge (>1.600.000 km2), shallow and isolated epeiric sea. Within the Permian succession, oxygen-deficient facies are commonly recorded in the Mesosaurus-bearing Irati Formation (Cisuralian, Artinskian/Kungurian) and the overlaying Serra Alta Formation (Guadalupian, Wordian/Capitanian). Barren, dark-grey mudstones are the main facies preserved in this last unit, which has usually discouraged extensive and detailed stratigraphical and paleontological investigations. However, exhaustive sedimentological, taphonomic and paleontological surveys in those deposits reveal a dynamic and complex depositonal history. Based on sedimentary fabric, autochthonous to parautochthonous occurrences of shelly benthic invertebrates (bivalves) and the presence/absence of concretion-bearing and phosphate-rich layers, we report variations in the oxygen levels of bottom and pore waters, in bathymetry, sedimentation rates, and changes in benthic colonization. Our data indicate that the deposition of this "apparently barren" mudstone-dominated succession was driven by a complex interplay of variations in sedimentation rate and oxygen pulses tied to tectonic and climate changes. Three distinct populations or invertebrate paleocommunities were recorded, which were adapted to (a) normal background low-oxygen (dysoxic) conditions (i.e., minute infaunal suspension-feeding bivalves associated with the trace fossil Planolites), (b) chemically toxic (anoxic/extreme dysoxic) substrates, including gigantic burrowing bivalves (probable chemosymbiotic taxa), and (c) oxic/dysoxic substrates following short-term bottom disruptions.

Benthic response to water quality and biotic pressures in lower south San Francisco Bay, Alviso Slough, and Coyote Creek

USGS Publications Warehouse

Parchaso, Francis; Thompson, Janet K.; Crauder, Jeff S.; Anduaga, Rosa I.; Pearson, Sarah A.

2015-12-22

Bivalve biomass is elevated in summer and fall relative to the spring and winter except in Artesian Slough, where bivalves did not establish a signifcant presence. Presence of certain species contributes to the prey value of the community to predators. Potamocorbula amurensis is a shallow-burrowing bivalve and hence is easy prey for bottom-feeding predators. In contrast, Macoma petalum is a deposit feeder and can burrow deeper into the substrate than Potamocorbula amurensis, making it harder to be preyed upon. The quantitative importance of such predator-prey relationships on phytoplankton dynamics requires further investigation. There were also more amphipods in the sloughs in March 2014; this group is another potential contributor to the benthic-pelagic biomass balance. There is no observed reason for Artesian Slough to have low bivalve biomass values and high amphipod abundances. 

Benthic foraminiferal assemblages and microfacies analysis of the Upper Cretaceous-Paleocene (?) platform carbonate sequence in the Central Taurides, S Turkey

NASA Astrophysics Data System (ADS)

Solak, Cemile; Taslı, Kemal; Koç, Hayati

2017-04-01

The Upper Cretaceous succession outcropping in the area known as Anamas-Akseki Autochton or Geyikdaǧı Unit, which is situated western part of the Central Taurides, consists of approximately 500 m thick purely platform carbonate sediments. Integrated microfacies/facies studies and biostratigraphic analysis of the Kuyucak stratigraphic section provided to recognise depositional settings and benthic foraminiferal biozones. The Upper Cretaceous begins with Cenomanian limestones intercalated with limestone breccias (Unit 1) containing mainly Pseudorhapydionina dubia, Cuneolina pavonia, Nezzazata simplex (Association 1) and unconformably overlies the Lower Cretaceous (Barremian-Aptian) limestones with Vercorsella laurentii, Praechrysalidina infracretacea and Salpingoporella hasi. The Cenomanian limestones include benthic foraminiferal packstone/wackestone, peloidal packstone/wackestone and mudstone microfacies deposited restricted platform conditions. Intercalations of emersion breccias suggest sporadic subaerial exposure of the platform. The Cenomanian succession are truncated by an unconformity characterised by locale bauxite infills. Immediately above the unconformable surface, dolomitic limestones and rudistid limestones (Unit 2) are assigned to the upper Campanian based on the benthic foraminiferal assemblage (Association 2) comprising mainly Murciella cuvillieri, Pseudocyclammina sphaeroidea, Accordiella conica, Scandonea samnitica and Fleuryana adriatica. The upper Campanian limestones composed of dominantly benthic foraminiferal packstone/wackestone microfacies deposited in shallow water environments with low water energy, subjected to restriction in water circulation, The following limestones of the Unit 2 is characterised by sporadic intercalation of "open shelf" Orbitoides, Omphalocyclus, Siderolites assemblage (Association 3), assigned to the Maastrichtian, in addition to pre-existing "restricted platform" species. Pseudedomia hekimhanensis and Helenocyclina beotica are occasionally accompanied this association. In the upper half of this biozone, the Rhapydionina liburnica subzone (Association 3b) is distinguished by the first occurences of Valvulina aff. triangularis, Loftusia minor as well as the nominal species. The Maastrichtian limestones with sporadically open marine influence consist mostly of bioclastic/microbioclastic (rudist-bearing) wackestone/packstone/grainstone, benthic foraminiferal packstone/wackestone with rudist fragments and peloidal/intraclastic packstone/wackestone microfacies deposited in shallow subtidal-subtidal (lagoonal) environments characterised by different hydrodynamic regimes (low to high energy). The Upper Cretaceous succession passes upwardly into 70 meters thick limestones and clayey limestones (Unit 3) which do not contain rudists and pre-existing foraminiferal assemblage with one exception Valvulina aff. triangularis. Variable amounts of ostracoda, Discorbidae, Miliolidae, dasycladacean algae and Stomatorbina sp. (Association 4) occur into muddy-rich microfacies suggesting restricted conditions with low water energy. A probable Paleocene age is proposed for the Unit 3 based on the occurence of Valvulina aff. triangularis and Stomatorbina sp. which were previously recorded from Paleocene of peri-Tethian platforms. The Upper Cretaceous-Paleocene(?) platform carbonate succession is unconformably overlain by conglomerate, limestone with Nummulites and siliciclastic sediments of the Eocene age. We thank to the Scientific and Technological Research Council of Turkey (TUBITAK) for a financial support with project no:115Y130.

The biogeochemistry of Arabian Sea surficial sediments: A review of recent studies

NASA Astrophysics Data System (ADS)

Cowie, Greg

2005-05-01

The Arabian Sea’s unusual features have drawn attention from oceanographers and other scientists since the late 1800s. Water-column processes, including the seasonally reversing monsoon-driven circulation and the associated upwelling and productivity, as well as a basin-wide, mid-water layer of intense oxygen depletion have been the foci of many studies. However, the importance of benthic processes in the Arabian Sea has also been recognized. Both the abyssal region and the continental margins have been sites of major studies focused on the biology and geochemistry of surficial sediments and key biogeochemical processes that occur across the benthic boundary layer, especially in the last decade. A summary of benthic studies carried out up to the 1990s is followed by descriptions and syntheses of biological and geochemical studies conducted since that time. The results highlight that the benthic system of the Arabian Sea is highly dynamic, with evidence of strong benthic-pelagic coupling displayed as a cross-basin trophic gradient and in benthic response to seasonal variability in productivity and C flux. Benthic biogeochemical processes, especially on the upper slope and within the oxygen minimum zone, including denitrification, phosphogenesis, and fluxes of trace metals, nutrients and dissolved organic matter, may be of global significance but remain poorly quantified. Sedimentary organic matter distributions across the Arabian Sea have served to fuel an ongoing debate over the controlling environmental factors. Recent studies have illustrated that factors including the supply of reactive organic matter, oxygen exposure, digestion and mixing by the benthos, sorptive preservation, and sediment dilution, winnowing and down-slope transport, all interact in a complex fashion and with varied impact to determine distributions of sedimentary organic matter across the different margins of this basin. Notable features include the facts that it is only at the core of the oxygen minimum zone on the Indian and Pakistan margins where laminated sediments occur and oxygen concentrations appear to fall below the threshold required for macrobenthos, and that sulfate reduction is surprisingly suppressed when compared to rates observed on other upwelling margins with oxygen minimum zones. The review is completed by suggestions for future benthic research in the Arabian Sea.

Lifestyle and Ice: The Relationship between Ecological Specialization and Response to Pleistocene Climate Change.

PubMed

Kašparová, Eva; Van de Putte, Anton P; Marshall, Craig; Janko, Karel

2015-01-01

Major climatic changes in the Pleistocene had significant effects on marine organisms and the environments in which they lived. The presence of divergent patterns of demographic history even among phylogenetically closely-related species sharing climatic changes raises questions as to the respective influence of species-specific traits on population structure. In this work we tested whether the lifestyle of Antarctic notothenioid benthic and pelagic fish species from the Southern Ocean influenced the concerted population response to Pleistocene climatic fluctuations. This was done by a comparative analysis of sequence variation at the cyt b and S7 loci in nine newly sequenced and four re-analysed species. We found that all species underwent more or less intensive changes in population size but we also found consistent differences between demographic histories of pelagic and benthic species. Contemporary pelagic populations are significantly more genetically diverse and bear traces of older demographic expansions than less diverse benthic species that show evidence of more recent population expansions. Our findings suggest that the lifestyles of different species have strong influences on their responses to the same environmental events. Our data, in conjunction with previous studies showing a constant diversification tempo of these species during the Pleistocene, support the hypothesis that Pleistocene glaciations had a smaller effect on pelagic species than on benthic species whose survival may have relied upon ephemeral refugia in shallow shelf waters. These findings suggest that the interaction between lifestyle and environmental changes should be considered in genetic analyses.

Icebergs, sea ice, blue carbon and Antarctic climate feedbacks

PubMed Central

Fleming, Andrew; Sands, Chester J.; Quartino, Maria Liliana; Deregibus, Dolores

2018-01-01

Sea ice, including icebergs, has a complex relationship with the carbon held within animals (blue carbon) in the polar regions. Sea-ice losses around West Antarctica's continental shelf generate longer phytoplankton blooms but also make it a hotspot for coastal iceberg disturbance. This matters because in polar regions ice scour limits blue carbon storage ecosystem services, which work as a powerful negative feedback on climate change (less sea ice increases phytoplankton blooms, benthic growth, seabed carbon and sequestration). This resets benthic biota succession (maintaining regional biodiversity) and also fertilizes the ocean with nutrients, generating phytoplankton blooms, which cascade carbon capture into seabed storage and burial by benthos. Small icebergs scour coastal shallows, whereas giant icebergs ground deeper, offshore. Significant benthic communities establish where ice shelves have disintegrated (giant icebergs calving), and rapidly grow to accumulate blue carbon storage. When 5000 km2 giant icebergs calve, we estimate that they generate approximately 106 tonnes of immobilized zoobenthic carbon per year (t C yr−1). However, their collisions with the seabed crush and recycle vast benthic communities, costing an estimated 4 × 104 t C yr−1. We calculate that giant iceberg formation (ice shelf disintegration) has a net potential of approximately 106 t C yr−1 sequestration benefits as well as more widely known negative impacts. This article is part of the theme issue ‘The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change’. PMID:29760118

Icebergs, sea ice, blue carbon and Antarctic climate feedbacks.

PubMed

Barnes, David K A; Fleming, Andrew; Sands, Chester J; Quartino, Maria Liliana; Deregibus, Dolores

2018-06-28

Sea ice, including icebergs, has a complex relationship with the carbon held within animals (blue carbon) in the polar regions. Sea-ice losses around West Antarctica's continental shelf generate longer phytoplankton blooms but also make it a hotspot for coastal iceberg disturbance. This matters because in polar regions ice scour limits blue carbon storage ecosystem services, which work as a powerful negative feedback on climate change (less sea ice increases phytoplankton blooms, benthic growth, seabed carbon and sequestration). This resets benthic biota succession (maintaining regional biodiversity) and also fertilizes the ocean with nutrients, generating phytoplankton blooms, which cascade carbon capture into seabed storage and burial by benthos. Small icebergs scour coastal shallows, whereas giant icebergs ground deeper, offshore. Significant benthic communities establish where ice shelves have disintegrated (giant icebergs calving), and rapidly grow to accumulate blue carbon storage. When 5000 km 2 giant icebergs calve, we estimate that they generate approximately 10 6 tonnes of immobilized zoobenthic carbon per year (t C yr -1 ). However, their collisions with the seabed crush and recycle vast benthic communities, costing an estimated 4 × 10 4  t C yr -1 We calculate that giant iceberg formation (ice shelf disintegration) has a net potential of approximately 10 6  t C yr -1 sequestration benefits as well as more widely known negative impacts.This article is part of the theme issue 'The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change'. © 2018 The Authors.

Time-response of cultured deep-sea benthic foraminifera to different algal diets

NASA Astrophysics Data System (ADS)

Heinz, P.; Hemleben, Ch; Kitazato, H.

2002-03-01

The vertical distribution of benthic foraminifera in the surface sediment is influenced by environmental factors, mainly by food and oxygen supply. An experiment of three different time series was performed to investigate the response of deep-sea benthic foraminifera to simulated phytodetritus pulses under stable oxygen concentrations. Each series was fed constantly with one distinct algal species in equivalent amounts. The temporal reactions of the benthic foraminifera with regard to the vertical distribution in the sediment, the total number, and the species composition were observed and compared within the three series. Additionally, oxygen contents and bacterial cell numbers were measured to ensure that these factors were invariable and did not influence foraminiferal communities. The addition of algae leads to higher population densities 21 days after food was added. Higher numbers of individuals were probably caused by higher organic levels, which in turn induced reproduction. A stronger response is found after feeding with Amphiprora sp. and Pyramimonas sp., compared to Dunaliella tertiolecta. At a constant high oxygen supply, no migration to upper layers was observed after food addition, and more individuals were found in deeper layers. The laboratory results thus agree with the predictions of the TROX-model. An epifaunal microhabitat preference was shown for Adercotryma glomerata. Hippocrepina sp. was spread over the entire sediment depth with a shallow infaunal maximum. Melonis barleeanum preferred a deeper infaunal habitat. Bacterial cell concentrations were stable during the laboratory experiments and showed no significant response to higher organic fluxes.

Eddy covariance measurement of the spatial heterogeneity of surface energy exchanges over Heron Reef, Great Barrier Reef, Australia

NASA Astrophysics Data System (ADS)

MacKellar, M.; McGowan, H. A.; Phinn, S. R.

2011-12-01

Coral reefs cover 2.8 to 6.0 x 105 km2 of the Earth's surface and are warm, shallow regions that are believed to contribute enhanced sensible and latent heat to the atmosphere, relative to the surrounding ocean. To predict the impact of climate variability on coral reefs and their weather and climate including cloud, winds, rainfall patterns and cyclone genesis, accurate parameterisation of air-sea energy exchanges over coral reefs is essential. This is also important for the parameterisation and validation of regional to global scale forecast models to improve prediction of tropical and sub-tropical marine and coastal weather. Eddy covariance measurements of air-sea fluxes over coral reefs are rare due to the complexities of installing instrumentation over shallow, tidal water. Consequently, measurements of radiation and turbulent flux data for coral reefs have been captured remotely (satellite data) or via single measurement sites downwind of coral reefs (e.g. terrestrial or shipboard instrumentation). The resolution of such measurements and those that have been made at single locations on reefs may not capture the spatial heterogeneity of surface-atmosphere energy exchanges due to the different geomorphic and biological zones on coral reefs. Accordingly, the heterogeneity of coral reefs with regard to substrate, benthic communities and hydrodynamic processes are not considered in the characterization of the surface radiation energy flux transfers across the water-atmosphere interface. In this paper we present a unique dataset of concurrent in situ eddy covariance measurements made on instrumented pontoons of the surface energy balance over different geomorphic zones of a coral reef (shallow reef flat, shallow and deep lagoons). Significant differences in radiation transfers and air-sea turbulent flux exchanges over the reef were highlighted, with higher Bowen ratios over the shallow reef flat. Increasing wind speed was shown to increase flux divergence between sites to the extent that under unstable, south-easterly Trade Winds the net flux of heat was positive and negative over different geomorphic zones. The surface drag coefficient ranged from 1 to 2.5 x 10-3, with no significant difference between sites. Results highlight the spatial variation of air-sea energetics across a lagoonal platform reef in response to local meteorology, hydrodynamics and benthic/substrate cover.

Composite biostratigraphy and microfacies analysis of the Upper Jurassic - Lower Cretaceous carbonate platform to slope successions in Sivrihisar (Eskişehir) region (NW Turkey, Pontides): Remarks on the palaeogeographic evolution of the Western Sakarya Zo

NASA Astrophysics Data System (ADS)

Atasoy, Serdar G.; Altıner, Demir; Okay, Aral I.

2017-04-01

Two stratigraphical sections were measured along the Upper Jurassic - Lower Cretaceous carbonate successions exposed in a tectonic klippe of the Sakarya Zone (Pontides), north of Sivrihisar. According to the biozonation and microfacies types, two coeval but dissimiliar rock successions, separated by a thrust fault, have been detected. These successions belong to different depositional belts of the Edremit-Bursa-Bilecik Carbonate Platform (EBBCP), western Sakarya Zone. The lower succession displays a slope to basin facies and consists of the Kimmeridgian - Berriasian Yosunlukbayırı Formation and the overlying Valanginian Soǧukçam Limestone. Within these deposits the following biozones were defined: Globuligerina oxfordiana - Mohlerina basiliensis Zone (Kimmeridgian), Saccocoma Zone (Lower Tithonian), Protopeneroplis ultragranulata Zone (Upper Tithonian), Crassicollaria (massutiana subzone) Zone (uppermost Tithonian), Calpionella (alpina, Remaniella, elliptica subzones) Zone (Lower Berriasian), Calpionellopsis (simplex, oblonga subzones) Zone (Upper Berriasian) and Calpionellites (darderi subzone) Zone (Lower Valanginian). This succession is overthrusted from north to south by another distinct succession characterized by the shallow marine carbonate facies of the Kimmeridgian Günören Formation. Within this unit Labyrinthina mirabilis - Protopeneroplis striata (Kimmeridgian) Zone is recognized. A facies model is proposed for the Sivrihisar transect of the EBBCP for Kimmeridgian - Valanginian interval, based on the distribution of microfacies types. The toe-of-slope facies are characterized by peloidal-bioclastic packstone, mudstone-wackestone and calpionellid/ radiolarian wackestone-packstone comprising pelagic taxa (calpionellids, radiolaria, Globochaete sp., Pithonella sp., Saccocoma sp., calcareous dinocysts, aptychi, very rare planktonic foraminifera and nannoconids) and rare fossil groups transported from the carbonate platform (benthic foraminifera, microencrusters, worm tubes, bivalve, crinoid and echinoid fragments). These deposits represent the background pelagic deposition on the slope. The slope facies are mainly composed of bioclastic-peloidal/ bioclastic-intraclastic packstone, rudstone-grainstone, bioclastic-lithoclastic floatstone-rudstone and reflect generally the increase in the amount of platform derived material (benthic foraminifera, microencrusters, worm tubes, corals, sponges, bryozoa). The matrix of these coarse grained deposits also contains pelagic taxa (calpionellids, radiolaria, Saccocoma sp., Globochaete sp., Pithonella sp., aptyhci). The slope facies are sometimes intercalataed with the toe-of-slope type facies indicating quiescence periods. The shallow marine carbonate platform deposits are characterized by peloidal-intraclastic poorly washed grainstone with bioclasts, bioclastic mudstone-wackestone, intraclastic packstone-rudstone and contain several shallow marine fossils (benthic foraminifera, encrustres and rare echnoid, bivalve and coral fragments) without any pelagic taxa. These carbonates are interpreted as back-reef platform deposits that should not be far away from the platform margin due to the co-occurence of Protopeneroplis striata and Mohlerina basiliensis, abundant in the shelf edge and reefal areas with the complex benthic foraminifera, Labyrinthina mirabilis common in lagoonal areas. If the position of the studied sections with respect to the EBBCP is considered, the studied basin and slope facies should represent the southern platform margin and slope environments of this carbonate platform that faced an ocean to the south during the Jurassic-Cretaceous. The slope and basinal facies overthrusted by the shallow marine deposits in a region situated to the south of the main İzmir-Ankara-Erzincan (İAE) suture suggests an important disruption and shortening of the EBBCP margin and slope deposits related to the closure of the İAE ocean.

Foraminifera and the ecology of sea grass communities since the late Cretaceous

NASA Astrophysics Data System (ADS)

Hart, Malcolm; Smart, Christopher; Jagt, John

2016-04-01

Sea grasses are marine angiosperms (plants) that, in the late Cretaceous, migrated from the land into shallow-water marine environments. They represent a distinct, but fragile, marine habitat and sea grass meadows are often regarded as biodiversity hot-spots with a range of species (including fish, sea horses and cuttlefish) using them as nurseries for their young. Foraminifera are often found associated with sea grass meadows, with the associated taxa reflecting both the environment and palaeolatitude. In the tropics and sub-tropics, miliolid foraminifera dominate (e.g., Peneroplis spp.) as do large discoidal taxa such as Marginopora and Calcarina. In temperate to cool latitudes the assemblage changes to one dominated by smaller benthic taxa, including Elphidium spp. One taxon, Elphidium crispum, is geotropic and is often found - in the summer months - to crowd the fronds of the sea grass. In the Gulpen and Maastricht formations of the Maastricht area (The Netherlands and Belgium) sea grass fossils (both fronds and rhizomes) have been recorded in association with assemblages of both larger and smaller benthic foraminifera (Hart et al., 2016). Some of the large discoidal forms (e.g., Omphalocyclus and Orbitoides/Lepidorbitoides) and the distinctive Siderolites are associated with these sea grass fossils and are suggestive of the modern sea grass communities of sub-tropical areas. While earlier records were of relatively isolated sea grasses, in September/October 2015 surfaces with abundant sea grasses were found that are suggestive of complete 'meadows'. Preservation of some silicified rhizomes indicates that silicification must have been very rapid, before any degradation or compaction of the delicate tissues. The presence of sea grass fossils and their associated benthic foraminifera is indicative of a clear, shallow-water seaway, with a maximum depth of 15-20 m. The reported variations in sea level during the latest Cretaceous cannot, therefore, have been very large as such a change in water depth would have been disastrous to such a fragile ecosystem. The fossil record of sea grasses in the Cenozoic is relatively limited, though there are some assemblages of benthic foraminifera that are suggestive of their presence, despite the lack of plant fossils. Hart, M.B., FitzPatrick, M.E.J. & Smart, C.W. 2016. The Cretaceous/Paleogene boundary: Foraminifera, sea grasses, sea level change and sequence stratigraphy. Palaeogeography, Palaeoclimatology, Palaeoecology, 441, 420-429.

Carbonate factories: A conundrum in sedimentary geology

NASA Astrophysics Data System (ADS)

Pomar, L.; Hallock, P.

2008-03-01

Describing, characterizing and interpreting the nearly infinite variety of carbonate rocks are conundrums - intricate and difficult problems having only conjectural answers - that have occupied geologists for more than two centuries. Depositional features including components, rock textures, lithofacies, platform types and architecture, all vary in space and time, as do the results of diagenetic processes on those primary features. Approaches to the study of carbonate rocks have become progressively more analytical. One focus has evolved from efforts to build reference models for specific Phanerozoic windows to scrutinize the effect of climate and long-term oscillations of the ocean-atmosphere system in influencing the mineralogy of carbonate components. This paper adds to the ongoing lively debates by attempting to understand changes in the predominant types of carbonate-producing organisms during the Mesozoic-Cenozoic, while striving to minimize the uniformitarian bias. Our approach integrates estimates of changes in Ca 2+ concentration in seawater and atmospheric CO 2, with biological evolution and ecological requirements of characteristic carbonate-producing marine communities. The underlying rationale for our approach is the fact that CO 2 is basic to both carbonates and organic matter, and that photosynthesis is a fundamental biological process responsible for both primary production of organic matter and providing chemical environments that promote calcification. Gross photosynthesis and hypercalcification are dependent largely upon sunlight, while net primary production and, e.g., subsequent burial of organic matter typically requires sources of new nutrients (N, P and trace elements). Our approach plausibly explains the changing character of carbonate production as an evolving response to changing environmental conditions driven by the geotectonic cycle, while identifying uncertainties that deserve further research. With metazoan consumer diversity reduced by the end-Permian extinctions, excess photosynthesis by phytoplankton and microbial assemblages in surface waters, induced by moderately high CO 2 and temperature during the Early Mesozoic, supported proliferation of non-tissular metazoans (e.g., sponges) and heterotrophic bacteria at the sea floor. Metabolic activity by those microbes, especially sulfate reduction, resulted in abundant biologically-induced geochemical carbonate precipitation on and within the sea floor. For example, with the opening of Tethyan seaways during the Triassic, massive sponge/microbe boundstones (the benthic automicrite factory) formed steep, massive and thick progradational slopes and, locally, mud-mounds. As tectonic processes created shallow epicontinental seas, photosynthesis drove lime-mud precipitation in the illuminated zone of the water column. The resulting neritic lime-mud component of the shallow-water carbonate factory became predominant during the Jurassic, paralleling the increase in atmospheric pCO 2, while the decreasing importance of the benthic automicrite factory parallels the diversification of calcifying metazoans, phytoplankton and zooplankton. With atmospheric pCO 2 declining through the Cretaceous, the potential habitats for neritic lime-mud precipitation declined. At the same time, peak oceanic Ca 2+ concentrations promoted biotically-controlled calcification by the skeletal factory. With changes produced by extinctions and turnovers at the Cretaceous-Tertiary boundary, adaptations to decreasing Ca 2+ and pCO 2, coupled with increasing global temperature gradients (i.e., high-latitude and deep-water cooling), and strategies that efficiently linked photosynthesis and calcification, promoted successive changes of the dominant skeletal factory through the Cenozoic: larger benthic foraminifers (protist-protist symbiosis) during the Paleogene, red algae during the Miocene and modern coral reefs (metazoan-protist symbiosis) since Late Miocene.

An Integrated Approach to Understand Relationships Between Shallow Water Benthic Community Structure and Ecosystem Function

DTIC Science & Technology

2008-11-01

water, sediment, and benthos along a gradient of disturbance intensity: Adaptive responses of the sediment feeders. Archives of Hydrobiology 127...0.13 8 Mollusca: Gastropoda Acetocina canaliculata 0.38 0.26 8 Mollusca: Gastropoda Acteon punctostriatus 0.13 0.13 8 Mollusca: Gastropoda Gastropod sp... Gastropod sp. 3 0.13 0.13 8 Mollusca: Gastropoda Gastropoda 0.38 0.26 8 Mollusca: Gastropoda Skeneopsis planorbis 0.13 0.13 8 Nemertea Nemertean sp. 1

A Literature Review of Processes for Gravel Deposit Identification in the Lower Mississippi River

DTIC Science & Technology

2010-07-01

deposits. ERDC/GSL SR-10-2 35 References Anstee, J. M., D . L. B. Jupp, and G. T. Byrne. 1997. The shallow benthic cover map and optical water ...Engineers. Biedenharn, D . S., L. C. Hubbard, and P . H. Hoffman. 2000. Historical analysis of dike systems on the lower Mississippi River...Systems Science and Policy. Seaside, CA: California State University, Monterey Bay. Lagasse, P . F., B. R. Winkley, and D . B. Simons. 1980. Impact of

Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (South Atlantic) Hard Clam,

DTIC Science & Technology

1987-08-01

C.E., and R.F. Srna. 1975 Shallow-water marine benthic macro- Toxicity of ammonia, n itite ion, invertebrates of South Carolina: nitrate ion, anI...to iden- Proc. Gulf Caribb. Fish. Inst. 26: tification of marine and estuarine 59-74. invertebrates : Cape Hatteras to the Bay of Fundy. Wiley...Ma is. Mileikovsky, S.A. 1973. Speed of 7;-pWT-ihtsville Beach. 17 pp. active movement of pelagic larvae of marine bottom invertebrates and Pearse

Middle Eocene Nummulites and their offshore re-deposition: A case study from the Middle Eocene of the Venetian area, northeastern Italy

NASA Astrophysics Data System (ADS)

Bassi, Davide; Nebelsick, James H.; Puga-Bernabéu, Ángel; Luciani, Valeria

2013-11-01

The Middle Eocene Calcari nummulitici formation from northeastern Italy, Venetian area, represents a shallow-marine carbonate ramp developed on the northern Tethyan margin. In the Monti Berici area, its main components are larger foraminifera and coralline red algal communities that constitute thick carbonate sedimentary successions. Middle ramp and proximal outer ramp environments are recognized using component relationships, biofacies and sedimentary features. The middle-ramp is characterized by larger flattened-lenticular Nummulites on palaeohighs between which rhodoliths formed. Larger Nummulites palaeohighs containing Nummulites millecaput, Nummulites crassus, Nummulites discorbinus and Nummulites cf. gizehensis developed more basin-wards. The following relatively quiet environments of basin-wards of the palaeohighs represent areas of maximum carbonate production. The transition between the distal middle- and the proximal outer-ramp settings is marked in the study area by a large erosional surface which is interpreted to have been formed as a result of an erosive channel body filled in by deposits re-sedimented from shallower depths. These off-shore re-sedimented channelized deposits, ascribed to the Shallow Benthic Zone SBZ 15, lying on hemipelagic marls (planktonic foraminiferal zone E9 (P11)) allow for a biostratigraphic correlation to the Late Lutetian. The studied deposits, represented by packstone to rudstones, were displaced whilst still unlithified. The Lutetian-Bartonian regression along with the local tectonic activity promoted the production of a high amount of biogenic shallow-water carbonates mainly produced in the Mossano middle-ramp settings. These prograded towards the basinal areas with high-sedimentation rate of carbonate deposits characterized by the larger Nummulites rudstones. Such high amounts of sediment led to sediment instability which potentially could be mobilized either by return currents due to occasional major storms or by earthquakes induced by tectonic activity. These will have led to the offshore re-deposition of the Nummulites sediments into deeper water setting via the observed channels. Since potential migration pathways are short, such distal re-sedimented channel-filled material surrounded by hemipelagic marls is optimally placed for the formation of potential subsurface oil reservoirs.

Trawling on seamounts: can we balance exploitation and conservation?

NASA Astrophysics Data System (ADS)

Clark, M. R.; O'Driscoll, R. L.; Rowden, A. A.

2006-12-01

Seamounts are prominent features of the worlds underwater topography. They are widely regarded as productive, but fragile, habitat. They are the focus of commercial fishing for a number of demersal and pelagic fish and invertebrate species. Most fishing operations have some impact, either on the target species, associated bycatch species, or the benthic communities and habitat. Longlines, gillnets, traps and pots can all have some effect on the seafloor, but bottom trawling is the most well-known for causing considerable impact on the benthic habitat. There are few published studies on seamounts specifically, and recent research in New Zealand will be described. This has focused on deepwater fisheries for species such as orange roughy, which can form large aggregations over seamount features. The research includes analysis of the distribution of commercial catch and effort data from deepwater seamount fisheries, and "compare and contrast" surveys of seamounts that indicate the effects of bottom trawling can be severe on benthic invertebrate fauna. Fishing has clear consequences for structural complexity of the benthic habitat, and can alter species composition, and abundance. The results of such research are discussed with respect to management of seamount habitat in New Zealand, and the search for a balance that can allow sustainable seamount fisheries, and biodiversity conservation.

Carbonate Production by Benthic Communities on Shallow Coralgal Reefs of Abrolhos Bank, Brazil.

PubMed

Reis, Vanessa Moura Dos; Karez, Cláudia Santiago; Mariath, Rodrigo; de Moraes, Fernando Coreixas; de Carvalho, Rodrigo Tomazetto; Brasileiro, Poliana Silva; Bahia, Ricardo da Gama; Lotufo, Tito Monteiro da Cruz; Ramalho, Laís Vieira; de Moura, Rodrigo Leão; Francini-Filho, Ronaldo Bastos; Pereira-Filho, Guilherme Henrique; Thompson, Fabiano Lopes; Bastos, Alex Cardoso; Salgado, Leonardo Tavares; Amado-Filho, Gilberto Menezes

2016-01-01

The abundance of reef builders, non-builders and the calcium carbonate produced by communities established in Calcification Accretion Units (CAUs) were determined in three Abrolhos Bank shallow reefs during the period from 2012 to 2014. In addition, the seawater temperature, the irradiance, and the amount and composition of the sediments were determined. The inner and outer reef arcs were compared. CAUs located on the inner reef shelf were under the influence of terrigenous sediments. On the outer reefs, the sediments were composed primarily of marine biogenic carbonates. The mean carbonate production in shallow reefs of Abrolhos was 579 ± 98 g m-2 y-1. The builder community was dominated by crustose coralline algae, while the non-builder community was dominated by turf. A marine heat wave was detected during the summer of 2013-2014, and the number of consecutive days with a temperature above or below the summer mean was positively correlated with the turf cover increase. The mean carbonate production of the shallow reefs of Abrolhos Bank was greater than the estimated carbonate production measured for artificial structures on several other shallow reefs of the world. The calcimass was higher than the non-calcareous mass, suggesting that the Abrolhos reefs are still in a positive carbonate production balance. Given that marine heat waves produce an increase of turf cover on the shallow reefs of the Abrolhos, a decrease in the cover represented by reef builders and shifting carbonate production are expected in the near future.

Carbonate Production by Benthic Communities on Shallow Coralgal Reefs of Abrolhos Bank, Brazil

PubMed Central

dos Reis, Vanessa Moura; Karez, Cláudia Santiago; Mariath, Rodrigo; de Moraes, Fernando Coreixas; de Carvalho, Rodrigo Tomazetto; Brasileiro, Poliana Silva; Bahia, Ricardo da Gama; Lotufo, Tito Monteiro da Cruz; Ramalho, Laís Vieira; de Moura, Rodrigo Leão; Francini-Filho, Ronaldo Bastos; Pereira-Filho, Guilherme Henrique; Thompson, Fabiano Lopes; Bastos, Alex Cardoso; Salgado, Leonardo Tavares; Amado-Filho, Gilberto Menezes

2016-01-01

The abundance of reef builders, non-builders and the calcium carbonate produced by communities established in Calcification Accretion Units (CAUs) were determined in three Abrolhos Bank shallow reefs during the period from 2012 to 2014. In addition, the seawater temperature, the irradiance, and the amount and composition of the sediments were determined. The inner and outer reef arcs were compared. CAUs located on the inner reef shelf were under the influence of terrigenous sediments. On the outer reefs, the sediments were composed primarily of marine biogenic carbonates. The mean carbonate production in shallow reefs of Abrolhos was 579 ± 98 g m-2 y-1. The builder community was dominated by crustose coralline algae, while the non-builder community was dominated by turf. A marine heat wave was detected during the summer of 2013–2014, and the number of consecutive days with a temperature above or below the summer mean was positively correlated with the turf cover increase. The mean carbonate production of the shallow reefs of Abrolhos Bank was greater than the estimated carbonate production measured for artificial structures on several other shallow reefs of the world. The calcimass was higher than the non-calcareous mass, suggesting that the Abrolhos reefs are still in a positive carbonate production balance. Given that marine heat waves produce an increase of turf cover on the shallow reefs of the Abrolhos, a decrease in the cover represented by reef builders and shifting carbonate production are expected in the near future. PMID:27119151

Benthic Macrofaunal Communities at Newly Explored Caribbean Seamounts in the Greater/Lesser Antilles Transition Zone and a Comparison to Nearby Habitats

NASA Astrophysics Data System (ADS)

Demopoulos, A. W.; Bourque, J. R.; Cordes, E. E.; Chaytor, J. D.; Quattrini, A.

2016-02-01

Seamounts are topographically and oceanographically complex features with environmental characteristics, including substrate types, carbon flux, and current patterns, that vary greatly within and among seamounts. While seamounts are reputed to be oases and biodiversity hotspots, comparisons across multiple spatial scales of a seamount chain have yet to be explored. Along the margins of the Caribbean Sea basin, numerous seamounts punctuate the seafloor. In 2013 and 2014, we investigated the deep-sea benthic community ecology at Noroît, Dog, and Conrad Seamounts and nearby ridge, bank, and rift environments at depths ranging from 630 to 2930 m. Sediment push cores were collected to quantify macrofaunal (> 300 μm) density, diversity, community composition, grain size, and organic content. In addition, environmental data collected from CTDs and extracted from high resolution multibeam mapping efforts (e.g. slope, rugosity, roughness, slope orientation), allowed us to evaluate the role of microhabitats in structuring these communities. Preliminary results indicate that macrofaunal density across all sites decreased with depth in both seamount and non-seamount sediments, with the highest densities occurring in non-seamount environments. However, macrofaunal density patterns varied on individual seamounts. Macrofaunal densities on shallow seamounts (Conrad and Dog) increased with depth, whereas densities decreased with depth on the deeper Noroît seamount. The relationship between environmental parameters and macrofaunal community structure and biodiversity varied among seamounts and non-seamount environments. This study represents the first investigation of seamount infauna in the region and places this baseline information on seamount faunal biodiversity, spatial distribution of taxa, and overall ecology into a broader biogeographic context.

Coastal Upwelling Supplies Oxygen-Depleted Water to the Columbia River Estuary

PubMed Central

Roegner, G. Curtis; Needoba, Joseph A.; Baptista, António M.

2011-01-01

Low dissolved oxygen (DO) is a common feature of many estuarine and shallow-water environments, and is often attributed to anthropogenic nutrient enrichment from terrestrial-fluvial pathways. However, recent events in the U.S. Pacific Northwest have highlighted that wind-forced upwelling can cause naturally occurring low DO water to move onto the continental shelf, leading to mortalities of benthic fish and invertebrates. Coastal estuaries in the Pacific Northwest are strongly linked to ocean forcings, and here we report observations on the spatial and temporal patterns of oxygen concentration in the Columbia River estuary. Hydrographic measurements were made from transect (spatial survey) or anchor station (temporal survey) deployments over a variety of wind stresses and tidal states during the upwelling seasons of 2006 through 2008. During this period, biologically stressful levels of dissolved oxygen were observed to enter the Columbia River estuary from oceanic sources, with minimum values close to the hypoxic threshold of 2.0 mg L−1. Riverine water was consistently normoxic. Upwelling wind stress controlled the timing and magnitude of low DO events, while tidal-modulated estuarine circulation patterns influenced the spatial extent and duration of exposure to low DO water. Strong upwelling during neap tides produced the largest impact on the estuary. The observed oxygen concentrations likely had deleterious behavioral and physiological consequences for migrating juvenile salmon and benthic crabs. Based on a wind-forced supply mechanism, low DO events are probably common to the Columbia River and other regional estuaries and if conditions on the shelf deteriorate further, as observations and models predict, Pacific Northwest estuarine habitats could experience a decrease in environmental quality. PMID:21533083

Metabolic rates of benthic deep-sea decapod crustaceans decline with increasing depth primarily due to the decline in temperature

NASA Astrophysics Data System (ADS)

Childress, J. J.; Cowles, D. L.; Favuzzi, J. A.; Mickel, T. J.

1990-06-01

The oxygen consumption rates of 11 species of benthic deep-sea decapod crustaceans were measured at a variety of temperatures to test the hypothesis that the metabolic rates of benthic crustaceans decline with increasing depth of occurrence only to the extent explained by the decline in temperature with depth. The species were captured at depths between 150 and 2000m off Southern California using an epibenthic beam trawl equipped with a thermally protecting cod-end to bring the animals to the surface uncontaminated by sediment and at the depth temperature. The data, combined with those for six species of shallower-living crustaceans from California waters, showed a significant decline in oxygen consumption rate with increased species' depths of occurrence, when the measurements were made at temperatures appropriate to each species' depth range. There was no significant relation between wet weight and depth of occurrence in these species. When the data were adjusted to 10°C using a moderate temperature effect factor (corresponding to Q10 values of 2-2.3 depending on the species and temperature range), the significant relationship between oxygen consumption rate and depth was lost, indicating that the observed decline with depth was due to the decline in temperature with depth. When the relationship between metabolic rate and depth of occurrence for the most active (carideans and penaeid) species were compared (ANCOVA) with that for the rest of the species, the active species had significantly higher rates. By combining this data set with data from the literature for a wide variety of shallow-living benthic decapod crustaceans, it was possible to create a data set of 35 species in which the effects of temperature, minimum depth of occurrence and body mass could be separated by multiple linear regression. This demonstrated highly significant effects of size and temperature, but no significant effect of depth for the entire data set and for the data set excluding penaeids and carideans. In contrast, the carideans showed a significant effect of depth on metabolic rate. This is discussed in terms of the adaptive and selective factors responsible for the well-known decline in metabolic rates of midwater crustaceans and fishes, an effect which does exceed the effect of temperature. It is suggested that the typical pattern for deeper living animals may be that metabolic rates on average vary as a function of depth due primarily to variation in temperature, except for the visually orienting pelagic groups (cephalopods, crustaceans and fishes). For those benthic forms which are particularly visually oriented and/or partially pelagic some significant depth-related decline in metabolism beyond that due to the decline in temperature is expected.

Mapping epibenthic assemblages and their relations to sedimentary features in shallow-water, high-energy environments

NASA Astrophysics Data System (ADS)

Sisson, John D.; Shimeta, Jeff; Zimmer, Cheryl Ann; Traykovski, Peter

2002-03-01

Knowledge of spatial relationships among benthic biota and sedimentary features in shallow-water (<30 m) high-energy environments has been severely limited by sampling technology. We describe and report tests of a SCUBA-diving mapping method specifically for this region. Underwater acoustic location is used to achieve meter-scale resolution over kilometer-scale regions of the sea floor. A triad of acoustic transponders is bottom-mounted at known positions, 300-500 m apart. Transported by underwater personal vehicles, SCUBA-divers map the bed using hand-held acoustic receivers that record ranges to the transponders. The mean error of acoustic fixes was 2.4±1.2 m in a 0.5 km×1.0 km test area. Dense assemblages of epibenthic animals were mapped relative to sediment texture and bedforms off the exposed south coast of Martha's Vineyard Island, Massachusetts, USA. Surveys one month apart within a 0.6 km×0.6 km area (8-12 m depth) revealed 100-m-scale patches of the tube worm Spiophanes bombyx (⩽30,000 m -2) in fine sand and of the sand dollar Echinarachnius parma (⩽55 m -2) in coarse sand. Raised mud patches that, together with fine sand, occurred in two shore-perpendicular belts are likely exposed, ancient marsh deposits. Depth gradients of sand-ripple geometry indicated that ripples in deeper areas were not in equilibrium with wave conditions monitored during surveys; i.e., they were relict ripples. Thus, sand dollars in some areas may have had >1 month to rework surficial sands since their transformation by physical processes. Linear regressions of ripple characteristics against sand dollar or tube worm densities were not significant, although such relationships would be highly dependent on temporal scale. The survey method described here can be used at more frequent intervals to explore such interactions between epibenthic animals and sediment-transport dynamics.

Fall diet and bathymetric distribution of deepwater sculpin (Myoxocephalus thompsonii) in Lake Huron

USGS Publications Warehouse

O'Brien, T. P.; Roseman, E.F.; Kiley, C.S.; Schaeffer, J.S.

2009-01-01

Deepwater sculpin Myoxocephalus thompsonii are an important component of Great Lake's offshore benthic food webs. Recent declines in deepwater sculpin abundance and changes in bathymetric distribution may be associated with changes in the deepwater food web of Lake Huron, particularly, decreased abundance of benthic invertebrates such as Diporeia. To assess how deepwater sculpins have responded to recent changes, we examined a fifteen-year time series of spatial and temporal patterns in abundance as well as the diets of fish collected in bottom trawls during fall of 2003, 2004, and 2005. During 1992-2007, deepwater sculpin abundance declined on a lake-wide scale but the decline in abundance at shallower depths and in the southern portion of Lake Huron was more pronounced. Of the 534 fish examined for diet analysis, 97% had food in the stomach. Mysis, Diporeia, and Chironomidae were consumed frequently, while sphaerid clams, ostracods, fish eggs, and small fish were found in only low numbers. We found an inverse relationship between prevalence of Mysis and Diporeia in diets that reflected geographic and temporal trends in abundance of these invertebrates in Lake Huron. Because deepwater sculpins are an important trophic link in offshore benthic food webs, declines in population abundance and changes in distribution may cascade throughout the food web and impede fish community restoration goals.

Divergent ecosystem responses within a benthic marine community to ocean acidification.

PubMed

Kroeker, Kristy J; Micheli, Fiorenza; Gambi, Maria Cristina; Martz, Todd R

2011-08-30

Ocean acidification is predicted to impact all areas of the oceans and affect a diversity of marine organisms. However, the diversity of responses among species prevents clear predictions about the impact of acidification at the ecosystem level. Here, we used shallow water CO(2) vents in the Mediterranean Sea as a model system to examine emergent ecosystem responses to ocean acidification in rocky reef communities. We assessed in situ benthic invertebrate communities in three distinct pH zones (ambient, low, and extreme low), which differed in both the mean and variability of seawater pH along a continuous gradient. We found fewer taxa, reduced taxonomic evenness, and lower biomass in the extreme low pH zones. However, the number of individuals did not differ among pH zones, suggesting that there is density compensation through population blooms of small acidification-tolerant taxa. Furthermore, the trophic structure of the invertebrate community shifted to fewer trophic groups and dominance by generalists in extreme low pH, suggesting that there may be a simplification of food webs with ocean acidification. Despite high variation in individual species' responses, our findings indicate that ocean acidification decreases the diversity, biomass, and trophic complexity of benthic marine communities. These results suggest that a loss of biodiversity and ecosystem function is expected under extreme acidification scenarios.

Mg/Ca temperature calibration for the benthic foraminifers Bulimina inflata and Bulimina mexicana

NASA Astrophysics Data System (ADS)

Grunert, Patrick; Rosenthal, Yair; Jorissen, Frans; Holbourn, Ann

2016-04-01

Bulimina inflata Seguenza 1862 and Bulimina mexicana Cushman 1922 are cosmopolitan, shallow infaunal benthic foraminifers which are common in the fossil record throughout the Neogene and Quaternary. The closely related species share a similar costate shell morphology that differs in the presence or absence of an apical spine. In the present study, we evaluate the temperature dependency of Mg/Ca ratios of these species from an extensive set of core-top samples from the Atlantic and Pacific oceans. The results show no significant offset in Mg/Ca values between B. inflata, B. mexicana, and two other costate morphospecies when present in the same sample. The apparent lack of significant inter-specific/inter-morphotype differences amongst the analysed costate buliminds allows for the combined use of their data-sets for our core-top calibration. Over a bottom-water temperature range of 3-14°C, the Bulimina inflata/mexicana group shows a sensitivity of ˜0.12 mmol/mol/°C which is comparable to the epifaunal Cibicidoides pachyderma and higher than for the shallow infaunal Uvigerina spp., the most commonly used taxa in Mg/Ca-based palaeotemperature reconstruction. B. inflata and B. mexicana might thus be a valuable alternative in mesotrophic settings where many of the commonly used species are diminished or absent, and particularly useful in hypoxic settings where costate buliminds may dominate foraminiferal assemblages. This study was financially supported by the Max-Kade-Foundation and contributes to project P25831-N29 of the Austrian Science Fund (FWF).

Effects of Late-Cenozoic Glaciation on Habitat Availability in Antarctic Benthic Shrimps (Crustacea: Decapoda: Caridea)

PubMed Central

Dambach, Johannes; Thatje, Sven; Rödder, Dennis; Basher, Zeenatul; Raupach, Michael J.

2012-01-01

Marine invertebrates inhabiting the high Antarctic continental shelves are challenged by disturbance of the seafloor by grounded ice, low but stable water temperatures and variable food availability in response to seasonal sea-ice cover. Though a high diversity of life has successfully adapted to such conditions, it is generally agreed that during the Last Glacial Maximum (LGM) the large-scale cover of the Southern Ocean by multi-annual sea ice and the advance of the continental ice sheets across the shelf faced life with conditions, exceeding those seen today by an order of magnitude. Conditions prevailing at the LGM may have therefore acted as a bottleneck event to both the ecology as well as genetic diversity of today's fauna. Here, we use for the first time specific Species Distribution Models (SDMs) for marine arthropods of the Southern Ocean to assess effects of habitat contraction during the LGM on the three most common benthic caridean shrimp species that exhibit a strong depth zonation on the Antarctic continental shelf. While the shallow-water species Chorismus antarcticus and Notocrangon antarcticus were limited to a drastically reduced habitat during the LGM, the deep-water shrimp Nematocarcinus lanceopes found refuge in the Southern Ocean deep sea. The modeling results are in accordance with genetic diversity patterns available for C. antarcticus and N. lanceopes and support the hypothesis that habitat contraction at the LGM resulted in a loss of genetic diversity in shallow water benthos. PMID:23029463

Effects of late-cenozoic glaciation on habitat availability in Antarctic benthic shrimps (Crustacea: Decapoda: Caridea).

PubMed

Dambach, Johannes; Thatje, Sven; Rödder, Dennis; Basher, Zeenatul; Raupach, Michael J

2012-01-01

Marine invertebrates inhabiting the high Antarctic continental shelves are challenged by disturbance of the seafloor by grounded ice, low but stable water temperatures and variable food availability in response to seasonal sea-ice cover. Though a high diversity of life has successfully adapted to such conditions, it is generally agreed that during the Last Glacial Maximum (LGM) the large-scale cover of the Southern Ocean by multi-annual sea ice and the advance of the continental ice sheets across the shelf faced life with conditions, exceeding those seen today by an order of magnitude. Conditions prevailing at the LGM may have therefore acted as a bottleneck event to both the ecology as well as genetic diversity of today's fauna. Here, we use for the first time specific Species Distribution Models (SDMs) for marine arthropods of the Southern Ocean to assess effects of habitat contraction during the LGM on the three most common benthic caridean shrimp species that exhibit a strong depth zonation on the Antarctic continental shelf. While the shallow-water species Chorismus antarcticus and Notocrangon antarcticus were limited to a drastically reduced habitat during the LGM, the deep-water shrimp Nematocarcinus lanceopes found refuge in the Southern Ocean deep sea. The modeling results are in accordance with genetic diversity patterns available for C. antarcticus and N. lanceopes and support the hypothesis that habitat contraction at the LGM resulted in a loss of genetic diversity in shallow water benthos.

Holocene Ostracoda from the Herald Canyon, Eastern Siberian Sea from the SWERUS-C3 Expedition 2014

NASA Astrophysics Data System (ADS)

Gemery, L.; Cronin, T. M.; Jakobsson, M.; Barrientos, N.; O'Regan, M.; Muschitiello, F.; Koshurnikov, A.; Gukov, A.

2015-12-01

We analyzed Arctic benthic ostracode assemblages from two piston cores (PC) and their complementary multicores from Herald Canyon in the Eastern Siberian Sea. The cores (SWERUS-L2-2-PC1 [8.1 m], 2-MUC4, 71.7 m water depth, and SWERUS-L2-4-PC1 [6.2 m], 4-MUC4, 119.7 m water depth) were collected during Leg 2 of the 2014 SWERUS-C3 Expedition. Radiocarbon dates on mollusks indicate that sediments from 2-PC1 and 4-PC1 were deposited over the last 5,000 and 10,000 years respectively. The dominant ostracode species include: Acanthocythereis dunelmensis, Cytheropteron elaeni, Elofsonella concinna, Kotoracythere janae, Normanicythere leioderma, Semicytherura complanata. Based on species' distributions obtained from a 1,200-sample modern ostracode database, these species are known to be typical of shallow mid- to outer-continental shelf environments in the modern Arctic Ocean. The abundant and diverse benthic ostracode assemblages found in these cores suggest the influence of nutrient-rich Pacific water flowing in through the Bering Strait. The faunal assemblages are fairly uniform throughout 2-PC1, suggesting minimal variability in Pacific water inflow since at least 5 ka. In the lower section of 4-PC1, there is a major change to ostracode assemblages containing typical inner shelf, often brackish-water species, such as Cytheromorpha macchesneyi, and associated shallow Arctic shelf species (Sarsicytheridea punctillata and several Cytheropteron species), reflecting a period of lower, deglacial sea level.

Earth-System Scales of Biodiversity Variability in Shallow Continental Margin Seafloor Ecosystems

NASA Astrophysics Data System (ADS)

Moffitt, S. E.; White, S. M.; Hill, T. M.; Kennett, J.

2015-12-01

High-resolution paleoceanographic sedimentary sequences allow for the description of ecosystem sensitivity to earth-system scales of climate and oceanographic change. Such archives from Santa Barbara Basin, California record the ecological consequences to seafloor ecosystems of climate-forced shifts in the California Current Oxygen Minimum Zone (OMZ). Here we use core MV0508-20JPC dated to 735,000±5,000 years ago (Marine Isotope Stage 18) as a "floating window" of millennial-scale ecological variability. For this investigation, previously published archives of planktonic δ18O (Globigerina bulloides) record stadial and interstadial oscillations in surface ocean temperature. Core MV0508-20JPC is an intermittently laminated archive, strongly influenced by the California Current OMZ, with continuously preserved benthic foraminifera and discontinuously preserved micro-invertebrates, including ophiuroids, echinoderms, ostracods, gastropods, bivalves and scaphopods. Multivariate statistical approaches, such as ordinations and cluster analyses, describe climate-driven changes in both foraminiferal and micro-invertebrate assemblages. Statistical ordinations illustrate that the shallow continental margin seafloor underwent predictable phase-shifts in oxygenation and biodiversity across stadial and interstadial events. A narrow suite of severely hypoxic taxa characterized foraminiferal communities from laminated intervals, including Bolivina tumida, Globobulimina spp., and Nonionella stella. Foraminiferal communities from bioturbated intervals are diverse and >60% similar to each other, and they are associated with echinoderm, ostracod and mollusc fossils. As with climate shifts in the latest Quaternary, there is a sensitive benthic ecosystem response in mid-Pleistocene continental margins to climatically related changes in OMZ strength.

Spatial and temporal distribution patterns of benthic foraminifera in the Northeast Water Polynya, Greenland

NASA Astrophysics Data System (ADS)

Ahrens, Michael J.; Graf, Gerhard; Altenbach, Alexander V.

1997-01-01

Abundance, biofacies and ATP content of benthic foraminifera (>63 μm) were studied in the Northeast Water (NEW) Polynya (77-81°N, 5-17°W) over the ice-free summer, 1993, to investigate how a polynya system might influence the underlying benthic community. In the living assemblage, distinguished by Rose Bengal staining, over 60 taxa could be identified. The biofacies identified was similar to that of other Arctic shelf habitats. Foraminifera were counted in 3 size fractions (63-125 μm, 125-250 μm and >250 μm), with 65% of the foraminifera occurring in the smallest size fraction (63-125 μm). Total abundances (>63 μm) in the uppermost 1 cm averaged approximately 200 ind/10 cm 3 and declined down-core, as did the number of species. Abundances and species composition correlated positively with sediment chlorophyll and ATP content, with maxima occurring in the shallower northern regions of the polynya, suggesting a general dependence on food. Foraminera biomass was estimated to be 0.1-0.3 g C org/m 2. Abundances, biomass and ATP content were comparable to ice-free, deep-sea regions in the Norwegian Sea. Temporal changes observed over a 2 month period at one location were difficult to distinguish from spatial and analytical variability. Contrary to expectations, growth was unpronounced at the community and at a species level, implying either a delayed response of the benthic foraminiferal community to food inputs from the overlying water column or the presence of biological limitations other than food, such as predation.

Shallow subtidal survey of the Washington outer coast and Olympic National park to determine the distribution, fate, and effects of spilled bunker C fuel oil. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carney, D.; Kvitek, R.G.

1990-12-01

The report provides an evaluation of the impacts of the bunker C fuel oil spill on the shallow subtidal benthic communities of the Washington coast. The study is designed to provide a subtidal extension of the intertidal investigation performed by Battelle Laboratories. As such, the study sites and many of the methodologies are the same. There are four objectives of the study. They are: (1) to identify and define from existing data, the probable distribution of subtidal deposits along the Washington coast, (2) to document petroleum hydrocarbon contamination in shallow subtidal sediments in the Olympic National Park and along themore » Washington outer coast, (3) to characterize petroleum hydrocarbon contamination in molluscan and other species' tissues of opportunity in subtidal habitats along the Washington outer coast, and (4) to collect the initial faunal and sediment samples required for possible future analyses should oil-spill related hydrocarbons be detected from initial sediment and tissue analyses.« less

Last glacial to Holocene productivity and oxygen changes based on benthic foraminiferal assemblages from the western Alboran Sea

NASA Astrophysics Data System (ADS)

Pérez-Asensio, José N.; Cacho, Isabel; Frigola, Jaime; Pena, Leopoldo D.; Asioli, Alessandra; Kuhlmann, Jannis; Huhn, Katrin

2016-04-01

Late glacial to Holocene productivity and oxygen changes in the Alboran Sea were investigated analyzing benthic foraminiferal assemblages from the marine sediment core HER-GC-UB06. This 255 cm-long core was recovered at 946 m water depth in the Alboran Sea (western Mediterranean Sea) and includes homogeneous greyish clays from the last 23 ka. Nowadays, the core site is bathed by the Western Mediterranean Deep Water (WMDW) and near the overlying Levantine Intermediate Water (LIW). Benthic foraminifera from the size fraction >63 μm were identified at species level and counted until reaching at least 300 individuals. Q-mode principal component analyses (PCA) was performed to establish benthic foraminiferal assemblages. In addition, benthic foraminifera were classified according to their microhabitat preferences. Diversity was assessed with several diversity indices. Four benthic foraminiferal assemblages have been identified along the core. The distribution of these assemblages records changes in productivity and oxygen conditions during the last 23 ka. The last glacial and deglaciation interval, 23-12.5 ka, shows low diversity and is characterized by the Nonionella iridea assemblage, which includes Cassidulina laevigata, Bolivina dilatata, Nonionoides turgida and Cibicides pachyderma as secondary taxa. This assemblage can be interpreted as a moderately oxygenated mesotrophic environment with episodic pulses of fresh organic matter. Although general mesotrophic conditions prevail, the Last Glacial Maximum shows a more oligotrophic and better oxygenated setting as suggested by higher abundance of epifaunal-shallow infaunal taxa. In contrast, along the Bølling-Allerød eutrophic conditions with higher productivity and lower oxygenation are recorded by a deep infaunal taxa maximum. During the Younger Dryas (YD) and the earliest Holocene (12.5-10.5 ka), the Bolivina dilatata assemblage dominates coinciding with a lower diversity, especially during the YD. This species and the additional taxa of the assemblage (Bolivina spathulata, Bolivina subspinescens, Bulimina marginata, Bolivina variabilis and Uvigerina peregrina) also thrive in mesotrophic environments with fresh organic matter supply and moderate oxygen content. The lower part of the early Holocene (10.5-7.3 ka) is dominated by the Cassidulina obtusa assemblage including Bolivina subspinescens, Bolivina variabilis, Bulimina marginata, Gyroidina altiformis, Nonionella iridea and Quinqueloculina sp. as associated taxa. A highly diverse mesotrophic setting with slightly higher oxygenation can be inferred for this assemblage. This is supported by the higher abundance of epifaunal-shallow infaunal taxa and the presence of G. altiformis and Quinqueloculina sp. Finally, the highly diverse Alabaminella weddellensis assemblage occurs along the upper part of the core (7.3-0 ka) encompassing the upper early Holocene and late Holocene. Additional species of this assemblages are Uvigerina mediterranea, Melonis barleeanus, Cassidulina laevigata, Cassidulina obtusa and Uvigerina peregrina. This assemblage suggests mesotrophic conditions with a more continuous organic matter supply as pointed out by the occurrence of U. mediterranea and the intermediate infaunal M. barleeanus that can feed from more degraded organic matter. The onset of this assemblage around 7.3 ka might be related to the establishment of the semi-permanent productive 'Malaga cell" dated at 7.7 ka.

Towards a model of postglacial biogeography in shallow marine species along the Patagonian Province: lessons from the limpet Nacella magellanica (Gmelin, 1791)

PubMed Central

2012-01-01

Background Patagonia extends for more than 84,000 km of irregular coasts is an area especially apt to evaluate how historic and contemporary processes influence the distribution and connectivity of shallow marine benthic organisms. The true limpet Nacella magellanica has a wide distribution in this province and represents a suitable model to infer the Quaternary glacial legacy on marine benthic organisms. This species inhabits ice-free rocky ecosystems, has a narrow bathymetric range and consequently should have been severely affected by recurrent glacial cycles during the Quaternary. We performed phylogeographic and demographic analyses of N. magellanica from 14 localities along its distribution in Pacific Patagonia, Atlantic Patagonia, and the Falkland/Malvinas Islands. Results Mitochondrial (COI) DNA analyses of 357 individuals of N. magellanica revealed an absence of genetic differentiation in the species with a single genetic unit along Pacific Patagonia. However, we detected significant genetic differences among three main groups named Pacific Patagonia, Atlantic Patagonia and Falkland/Malvinas Islands. Migration rate estimations indicated asymmetrical gene flow, primarily from Pacific Patagonia to Atlantic Patagonia (Nem=2.21) and the Falkland/Malvinas Islands (Nem=16.6). Demographic reconstruction in Pacific Patagonia suggests a recent recolonization process (< 10 ka) supported by neutrality tests, mismatch distribution and the median-joining haplotype genealogy. Conclusions Absence of genetic structure, a single dominant haplotype, lack of correlation between geographic and genetic distance, high estimated migration rates and the signal of recent demographic growth represent a large body of evidence supporting the hypothesis of rapid postglacial expansion in this species in Pacific Patagonia. This expansion could have been sustained by larval dispersal following the main current system in this area. Lower levels of genetic diversity in inland sea areas suggest that fjords and channels represent the areas most recently colonized by the species. Hence recolonization seems to follow a west to east direction to areas that were progressively deglaciated. Significant genetic differences among Pacific, Atlantic and Falkland/Malvinas Islands populations may be also explained through disparities in their respective glaciological and geological histories. The Falkland/Malvinas Islands, more than representing a glacial refugium for the species, seems to constitute a sink area considering the strong asymmetric gene flow detected from Pacific to Atlantic sectors. These results suggest that historical and contemporary processes represent the main factors shaping the modern biogeography of most shallow marine benthic invertebrates inhabiting the Patagonian Province. PMID:22871029

Deposition of shallow water sponges in response to seasonal changes

NASA Astrophysics Data System (ADS)

Ávila, Enrique; Carballo, José Luis; Vega, Cristina; Camacho, Leonardo; Barrón-Álvarez, José J.; Padilla-Verdín, Claudia; Yáñez-Chávez, Benjamín

2011-08-01

Removal of organisms from the subtidal zone plays an important role in shaping benthic communities in shallow bays. The main objective of this research was to quantify the biomass of sponges washed up on the beach at Mazatlan Bay (Mexico, eastern Pacific Ocean), and to determine its relationship with local weather and oceanographic conditions. To know whether this process has a significant effect on the sponge populations, changes in abundance of the species washed into the beach were also quantified in adjoining sublittoral areas. The sponges that were washed ashore were mainly branching ( Mycale ramulosa), massive ( Haliclona caerulea) and cushion-shaped ( Callyspongia californica) species. Species with high content of spongin in their structure (e.g. Hyattella intestinalis) were common in the subtidal zone but were rarely found on the beach. Encrusting species were never found. Four-year data of sponge deposition on the beach showed that the total annual sponge biomass ranged from 30 to 60 g DW m - 2 with an inter-annual range from 0.1 to 17.3 g DW m - 2 . The highest deposition of sponges was during the spring-summer transition (from April to July), which was associated with a change in wind direction (from NW to WSW). This change also matched with low tides and a high resuspension of bottom sediments, suggesting a high-energy environment during this transition. The increase in sponge biomass washed on the beach coincided with a decrease in the density of adjacent sponge populations. A multiple regression analysis showed that 68.48% of the variation on sponge biomass on the beach could be statistically explained using a combination of environmental factors (wind speed, sediment resuspension and tides). Thus, seasonal changes in wind direction combined with the effect of low tides and sediment resuspension could serve to predict fragmentation/detachment events of benthic organisms in shallow sublittoral areas worldwide. This study also provides insights to explain the predominance of encrusting sponges in the Mexican Pacific Ocean.

Benthic Community Composition and Seabed Characteristics of a Chukchi Sea Pockmark

NASA Astrophysics Data System (ADS)

MacDonald, I. R.; Bluhm, B.; Iken, K.; Gagaev, S.; Robinson, S.

2005-12-01

Several dozen seafloor features were mapped by Larry Mayer and his colleagues using swath bathymetry during a 2003 cruise with the USCGC HEALY near the eastern edge of the Chukchi Plateau (Chukchi Sea 76.6N, 163.9W). These were sub-circular depressions ranging from approximately 250 to over 1000m in width, with depths of up to 50m below the surrounding seabed, and situated in water depths from 500 to 950m. The origin of these features was undetermined, but one possibility was that they were pockmarks formed as a result of gas or fluid expulsion processes. We report here on benthic sampling undertaken at one of these pockmarks on 18 July 2005, also from USCGC HEALY. This elongated feature had maximum water depth of approximately 940m, was 1200m in maximum width, and was depressed approximately 40m below the surrounding seabed. The ocean in the vicinity of the pockmark was heavily ice-covered, which tightly restricted the ship's mobility during sampling operations. We used an ROV to collect and photograph the benthic epifauna during a 6h transit that crossed from the outside of the pockmark to near the center over a distance of 900m. We used a down-looking digital camera to collect over 800 pictures of the benthos at altitudes of 2 to 3m above the seabed. We also collected three cores with a 25x25cm box corer. Our investigations did not provide any direct evidence for gas or fluid flux through the seabed of this feature. Neither did we see any secondary indications of methane flux such as authigenic carbonates or bacterial mats. The abundance and diversity of benthic epifauna at this station was the highest among 8 stations sampled using similar methods during a 30 day cruise. The ROV observed brittle stars, various types of anemones, shrimps, eel pouts, stalked crinoids, benthic ctenophore (likely new species), burrows and mounts, gooseneck barnacles, mysids. Holothurians (c.f. Peneagone sp.) were the single most abundant group and were often photographed in densities of over 50 individuals per square meter. Preliminary analysis of the box core samples: Polychaetes (e.g. Chaetozone setose, Aricidea sp., Ophelina sp., Progoniada sp., Proclea graffi, Protula globifera), Foraminifera, Nemertini, Coronata (Cnidaria tubes), Sipunculida (Golfingia), Bivalvia, Anthozoa.

Distribution and trajectories of floating and benthic marine macrolitter in the south-eastern North Sea.

PubMed

Gutow, Lars; Ricker, Marcel; Holstein, Jan M; Dannheim, Jennifer; Stanev, Emil V; Wolff, Jörg-Olaf

2018-06-01

In coastal waters the identification of sources, trajectories and deposition sites of marine litter is often hampered by the complex oceanography of shallow shelf seas. We conducted a multi-annual survey on litter at the sea surface and on the seafloor in the south-eastern North Sea. Bottom trawling was identified as a major source of marine litter. Oceanographic modelling revealed that the distribution of floating litter in the North Sea is largely determined by the site of origin of floating objects whereas the trajectories are strongly influenced by wind drag. Methods adopted from species distribution modelling indicated that resuspension of benthic litter and near-bottom transport processes strongly influence the distribution of litter on the seafloor. Major sink regions for floating marine litter were identified at the west coast of Denmark and in the Skagerrak. Our results may support the development of strategies to reduce the pollution of the North Sea. Copyright © 2018 Elsevier Ltd. All rights reserved.

ALien Biotic IndEX (ALEX) - a new index for assessing impacts of alien species on benthic communities.

PubMed

Çinar, Melih Ertan; Bakir, Kerem

2014-10-15

Biotic indices are mainly aimed at assessing levels of deterioration caused by chemical or organic pollution. However, no biotic index to date has been developed to detect impacts of alien species on benthic communities. In this paper, a new biotic index, namely ALEX, is proposed to address the objectives of the Water Framework Directive and was tested in Mersin Bay (Levantine Sea, Turkey). Species were divided into four biogeographic groups, namely native species, casual species, established species and invasive species, and the metric considers the relative importance of these groups in samples. The index classified the ecological status of some stations which are shallow, and close to harbor and river mouths as bad or poor in February and October. The ALEX values were positively and significantly correlated with total nitrogen, silicate and silt percentage in sediment, and negatively correlated with depth and the distance from the harbor. Copyright © 2014 Elsevier Ltd. All rights reserved.

Unexpected biotic resilience on the Japanese seafloor caused by the 2011 Tōhoku-Oki tsunami

NASA Astrophysics Data System (ADS)

Toyofuku, Takashi; Duros, Pauline; Fontanier, Christophe; Mamo, Briony; Bichon, Sabrina; Buscail, Roselyne; Chabaud, Gérard; Deflandre, Bruno; Goubet, Sarah; Grémare, Antoine; Menniti, Christophe; Fujii, Minami; Kawamura, Kiichiro; Koho, Karoliina Annika; Noda, Atsushi; Namegaya, Yuichi; Oguri, Kazumasa; Radakovitch, Olivier; Murayama, Masafumi; de Nooijer, Lennart Jan; Kurasawa, Atushi; Ohkawara, Nina; Okutani, Takashi; Sakaguchi, Arito; Jorissen, Frans; Reichart, Gert-Jan; Kitazato, Hiroshi

2014-12-01

On March 11th, 2011 the Mw 9.0 2011 Tōhoku-Oki earthquake resulted in a tsunami which caused major devastation in coastal areas. Along the Japanese NE coast, tsunami waves reached maximum run-ups of 40 m, and travelled kilometers inland. Whereas devastation was clearly visible on land, underwater impact is much more difficult to assess. Here, we report unexpected results obtained during a research cruise targeting the seafloor off Shimokita (NE Japan), shortly (five months) after the disaster. The geography of the studied area is characterized by smooth coastline and a gradually descending shelf slope. Although high-energy tsunami waves caused major sediment reworking in shallow-water environments, investigated shelf ecosystems were characterized by surprisingly high benthic diversity and showed no evidence of mass mortality. Conversely, just beyond the shelf break, the benthic ecosystem was dominated by a low-diversity, opportunistic fauna indicating ongoing colonization of massive sand-bed deposits.

Unexpected biotic resilience on the Japanese seafloor caused by the 2011 Tōhoku-Oki tsunami

PubMed Central

Toyofuku, Takashi; Duros, Pauline; Fontanier, Christophe; Mamo, Briony; Bichon, Sabrina; Buscail, Roselyne; Chabaud, Gérard; Deflandre, Bruno; Goubet, Sarah; Grémare, Antoine; Menniti, Christophe; Fujii, Minami; Kawamura, Kiichiro; Koho, Karoliina Annika; Noda, Atsushi; Namegaya, Yuichi; Oguri, Kazumasa; Radakovitch, Olivier; Murayama, Masafumi; de Nooijer, Lennart Jan; Kurasawa, Atushi; Ohkawara, Nina; Okutani, Takashi; Sakaguchi, Arito; Jorissen, Frans; Reichart, Gert-Jan; Kitazato, Hiroshi

2014-01-01

On March 11th, 2011 the Mw 9.0 2011 Tōhoku-Oki earthquake resulted in a tsunami which caused major devastation in coastal areas. Along the Japanese NE coast, tsunami waves reached maximum run-ups of 40 m, and travelled kilometers inland. Whereas devastation was clearly visible on land, underwater impact is much more difficult to assess. Here, we report unexpected results obtained during a research cruise targeting the seafloor off Shimokita (NE Japan), shortly (five months) after the disaster. The geography of the studied area is characterized by smooth coastline and a gradually descending shelf slope. Although high-energy tsunami waves caused major sediment reworking in shallow-water environments, investigated shelf ecosystems were characterized by surprisingly high benthic diversity and showed no evidence of mass mortality. Conversely, just beyond the shelf break, the benthic ecosystem was dominated by a low-diversity, opportunistic fauna indicating ongoing colonization of massive sand-bed deposits. PMID:25515588

Unexpected biotic resilience on the Japanese seafloor caused by the 2011 Tōhoku-Oki tsunami.

PubMed

Toyofuku, Takashi; Duros, Pauline; Fontanier, Christophe; Mamo, Briony; Bichon, Sabrina; Buscail, Roselyne; Chabaud, Gérard; Deflandre, Bruno; Goubet, Sarah; Grémare, Antoine; Menniti, Christophe; Fujii, Minami; Kawamura, Kiichiro; Koho, Karoliina Annika; Noda, Atsushi; Namegaya, Yuichi; Oguri, Kazumasa; Radakovitch, Olivier; Murayama, Masafumi; de Nooijer, Lennart Jan; Kurasawa, Atushi; Ohkawara, Nina; Okutani, Takashi; Sakaguchi, Arito; Jorissen, Frans; Reichart, Gert-Jan; Kitazato, Hiroshi

2014-12-17

On March 11(th), 2011 the Mw 9.0 2011 Tōhoku-Oki earthquake resulted in a tsunami which caused major devastation in coastal areas. Along the Japanese NE coast, tsunami waves reached maximum run-ups of 40 m, and travelled kilometers inland. Whereas devastation was clearly visible on land, underwater impact is much more difficult to assess. Here, we report unexpected results obtained during a research cruise targeting the seafloor off Shimokita (NE Japan), shortly (five months) after the disaster. The geography of the studied area is characterized by smooth coastline and a gradually descending shelf slope. Although high-energy tsunami waves caused major sediment reworking in shallow-water environments, investigated shelf ecosystems were characterized by surprisingly high benthic diversity and showed no evidence of mass mortality. Conversely, just beyond the shelf break, the benthic ecosystem was dominated by a low-diversity, opportunistic fauna indicating ongoing colonization of massive sand-bed deposits.

Benthic Oxygen Demand in Three Former Salt Ponds Adjacent to South San Francisco Bay, California

USGS Publications Warehouse

Topping, Brent R.; Kuwabara, James S.; Athearn, Nicole D.; Takekawa, John Y.; Parcheso, Francis; Henderson, Kathleen D.; Piotter, Sara

2009-01-01

Sampling trips were coordinated in the second half of 2008 to examine the interstitial water in the sediment and the overlying bottom waters of three shallow (average depth 2 meters). The water column at all deployment sites was monitored with dataloggers for ancillary water-quality parameters (including dissolved oxygen, salinity, specific conductance, temperature, and pH) to facilitate the interpretation of benthic-flux results. Calculated diffusive benthic flux of dissolved (0.2-micron filtered) oxygen was consistently negative (that is, drawn from the water column into the sediment) and ranged between -0.5 x 10-6 and -37 x 10-6 micromoles per square centimeter per second (site averages depicted in table 2). Assuming pond areas of 1.0, 1.4, and 2.3 square kilometers for ponds A16, A14, and A3W, respectively, this converts to an oxygen mass flux into the ponds' sediment ranging from -1 to -72 kilograms per day. Diffusive oxygen flux into the benthos (listed as negative) was lowest in pond A14 (-0.5 x 10-6 to -1.8 x 10-6 micromoles per square centimeter per second) compared with diffusive flux estimates for ponds A16 and A3W (site averages -26 x 10-6 to -35 x 10-6 and -34 x 10-6 to -37 x 10-6 micromoles per square centimeter per second, respectively). These initial diffusive-flux estimates are of the order of magnitude of those measured in the South Bay using core-incubation experiments (Topping and others, 2004), which include bioturbation and bioirrigation effects. Estimates of benthic oxygen demand reported herein, based on molecular diffusion, serve as conservative estimates of benthic flux because solute transport across the sediment-water interface can be enhanced by multidisciplinary processes including bioturbation, bioirrigation, ground-water advection, and wind resuspension (Kuwabara and others, 2009).

Determining the Extent and Characterizing Coral Reef Habitats of the Northern Latitudes of the Florida Reef Tract (Martin County)

PubMed Central

Walker, Brian K.; Gilliam, David S.

2013-01-01

Climate change has recently been implicated in poleward shifts of many tropical species including corals; thus attention focused on higher-latitude coral communities is warranted to investigate possible range expansions and ecosystem shifts due to global warming. As the northern extension of the Florida Reef Tract (FRT), the third-largest barrier reef ecosystem in the world, southeast Florida (25–27° N latitude) is a prime region to study such effects. Most of the shallow-water FRT benthic habitats have been mapped, however minimal data and limited knowledge exist about the coral reef communities of its northernmost reaches off Martin County. First benthic habitat mapping was conducted using newly acquired high resolution LIDAR bathymetry and aerial photography where possible to map the spatial extent of coral reef habitats. Quantitative data were collected to characterize benthic cover and stony coral demographics and a comprehensive accuracy assessment was performed. The data were then analyzed in a habitat biogeography context to determine if a new coral reef ecosystem region designation was warranted. Of the 374 km2 seafloor mapped, 95.2% was Sand, 4.1% was Coral Reef and Colonized Pavement, and 0.7% was Other Delineations. Map accuracy assessment yielded an overall accuracy of 94.9% once adjusted for known map marginal proportions. Cluster analysis of cross-shelf habitat type and widths indicated that the benthic habitats were different than those further south and warranted designation of a new coral reef ecosystem region. Unlike the FRT further south, coral communities were dominated by cold-water tolerant species and LIDAR morphology indicated no evidence of historic reef growth during warmer climates. Present-day hydrographic conditions may be inhibiting poleward expansion of coral communities along Florida. This study provides new information on the benthic community composition of the northern FRT, serving as a baseline for future community shift and range expansion investigations. PMID:24282542

Distributions of Benthic Foraminifera in the Salisbury Embayment before and after the PETM Onset

NASA Astrophysics Data System (ADS)

Range, M. M.; Robinson, M. M.

2017-12-01

Abrupt climatic perturbations associated with the onset of the Paleocene-Eocene Thermal Maximum (PETM) caused major disruptions to the shallow shelf ecology along the U.S. Atlantic Coastal Plain. Several studies examine the changes in benthic foraminiferal assemblages across the PETM in neritic sediments in New Jersey, Maryland, and Virginia and describe a hydrological and sedimentological paradigm shift that marks the Paleocene-Eocene boundary. In the Salisbury Embayment, a flexural low between the South Jersey High and the Norfolk Arch, this shift is seen in the transition between the upper Paleocene Aquia Formation and the lower Eocene Marlboro Clay. Here we map the abundance of seven benthic foraminifera species from five sites within the Salisbury Embayment from both the uppermost Aquia Formation and the lowermost Marlboro Clay. In addition to the benthic foraminiferal turnover at the PETM onset, we show a geographic distribution of species that highlights a past latitudinal biogeographic zonation not unlike what is found on the modern shelf in this region. Sites document a change in the abundance of species between the late Paleocene and early Eocene, showing a decrease in biodiversity of benthic species along the U.S. Atlantic Coast. Spatial extent of the different species also changed across the Paleocene-Eocene boundary. On the modern Atlantic shelf, a biogeographic zonation is due to the path of the Gulf Stream marking a boundary between relatively cold sea-surface temperatures to the north and warmer temperatures to the south, guided by the geomorphic expression of the mid-Atlantic coastline. During the Paleocene-Eocene transition, we suspect a similar boundary likely existed between the New Jersey sites and the Maryland and Virginia sites. We speculate that with the addition of more assemblage data, we will be able to partially reconstruct the geomorphic expression of the PETM coastline and/or the path of major coastal ocean currents.

Determining the extent and characterizing coral reef habitats of the northern latitudes of the Florida Reef Tract (Martin County).

PubMed

Walker, Brian K; Gilliam, David S

2013-01-01

Climate change has recently been implicated in poleward shifts of many tropical species including corals; thus attention focused on higher-latitude coral communities is warranted to investigate possible range expansions and ecosystem shifts due to global warming. As the northern extension of the Florida Reef Tract (FRT), the third-largest barrier reef ecosystem in the world, southeast Florida (25-27° N latitude) is a prime region to study such effects. Most of the shallow-water FRT benthic habitats have been mapped, however minimal data and limited knowledge exist about the coral reef communities of its northernmost reaches off Martin County. First benthic habitat mapping was conducted using newly acquired high resolution LIDAR bathymetry and aerial photography where possible to map the spatial extent of coral reef habitats. Quantitative data were collected to characterize benthic cover and stony coral demographics and a comprehensive accuracy assessment was performed. The data were then analyzed in a habitat biogeography context to determine if a new coral reef ecosystem region designation was warranted. Of the 374 km(2) seafloor mapped, 95.2% was Sand, 4.1% was Coral Reef and Colonized Pavement, and 0.7% was Other Delineations. Map accuracy assessment yielded an overall accuracy of 94.9% once adjusted for known map marginal proportions. Cluster analysis of cross-shelf habitat type and widths indicated that the benthic habitats were different than those further south and warranted designation of a new coral reef ecosystem region. Unlike the FRT further south, coral communities were dominated by cold-water tolerant species and LIDAR morphology indicated no evidence of historic reef growth during warmer climates. Present-day hydrographic conditions may be inhibiting poleward expansion of coral communities along Florida. This study provides new information on the benthic community composition of the northern FRT, serving as a baseline for future community shift and range expansion investigations.

National Seabed Mapping Programmes Collaborate to Advance Marine Geomorphological Mapping in Adjoining European Seas

NASA Astrophysics Data System (ADS)

Monteys, X.; Guinan, J.; Green, S.; Gafeira, J.; Dove, D.; Baeten, N. J.; Thorsnes, T.

2017-12-01

Marine geomorphological mapping is an effective means of characterising and understanding the seabed and its features with direct relevance to; offshore infrastructure placement, benthic habitat mapping, conservation & policy, marine spatial planning, fisheries management and pure research. Advancements in acoustic survey techniques and data processing methods resulting in the availability of high-resolution marine datasets e.g. multibeam echosounder bathymetry and shallow seismic mean that geological interpretations can be greatly improved by combining with geomorphological maps. Since December 2015, representatives from the national seabed mapping programmes of Norway (MAREANO), Ireland (INFOMAR) and the United Kingdom (MAREMAP) have collaborated and established the MIM geomorphology working group) with the common aim of advancing best practice for geological mapping in their adjoining sea areas in north-west Europe. A recently developed two-part classification system for Seabed Geomorphology (`Morphology' and Geomorphology') has been established as a result of an initiative led by the British Geological Survey (BGS) with contributions from the MIM group (Dove et al. 2016). To support the scheme, existing BGS GIS tools (SIGMA) have been adapted to apply this two-part classification system and here we present on the tools effectiveness in mapping geomorphological features, along with progress in harmonising the classification and feature nomenclature. Recognising that manual mapping of seabed features can be time-consuming and subjective, semi-automated approaches for mapping seabed features and improving mapping efficiency is being developed using Arc-GIS based tools. These methods recognise, spatially delineate and morphologically describe seabed features such as pockmarks (Gafeira et al., 2012) and cold-water coral mounds. Such tools utilise multibeam echosounder data or any other bathymetric dataset (e.g. 3D seismic, Geldof et al., 2014) that can produce a depth digital model. The tools have the capability to capture an extensive list of morphological attributes. The MIM geomorphology working group's strategy to develop methods for more efficient marine geomorphological mapping is presented with data examples and case studies showing the latest results.

A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment

PubMed Central

2012-01-01

Background The marine environment is comprised of numerous divergent organisms living under similar selective pressures, often resulting in the evolution of convergent structures such as the fusiform body shape of pelagic squids, fishes, and some marine mammals. However, little is known about the frequency of, and circumstances leading to, convergent evolution in the open ocean. Here, we present a comparative study of the molluscan class Cephalopoda, a marine group known to occupy habitats from the intertidal to the deep sea. Several lineages bear features that may coincide with a benthic or pelagic existence, making this a valuable group for testing hypotheses of correlated evolution. To test for convergence and correlation, we generate the most taxonomically comprehensive multi-gene phylogeny of cephalopods to date. We then create a character matrix of habitat type and morphological characters, which we use to infer ancestral character states and test for correlation between habitat and morphology. Results Our study utilizes a taxonomically well-sampled phylogeny to show convergent evolution in all six morphological characters we analyzed. Three of these characters also correlate with habitat. The presence of an autogenic photophore (those relying upon autonomous enzymatic light reactions) is correlated with a pelagic habitat, while the cornea and accessory nidamental gland correlate with a benthic lifestyle. Here, we present the first statistical tests for correlation between convergent traits and habitat in cephalopods to better understand the evolutionary history of characters that are adaptive in benthic or pelagic environments, respectively. Discussion Our study supports the hypothesis that habitat has influenced convergent evolution in the marine environment: benthic organisms tend to exhibit similar characteristics that confer protection from invasion by other benthic taxa, while pelagic organisms possess features that facilitate crypsis and communication in an environment lacking physical refuges. Features that have originated multiple times in distantly related lineages are likely adaptive for the organisms inhabiting a particular environment: studying the frequency and evolutionary history of such convergent characters can increase understanding of the underlying forces driving ecological and evolutionary transitions in the marine environment. PMID:22839506

Effects of mining-derived metals on riffle-dwelling benthic fishes in Southeast Missouri, USA

USGS Publications Warehouse

Allert, A.L.; Fairchild, J.F.; Schmitt, C.J.; Besser, J.M.; Brumbaugh, W.G.; Olson, S.J.

2009-01-01

We studied the ecological effects of mining-derived metals on riffle-dwelling benthic fishes at 16 sites in the Viburnum Trend lead-zinc mining district of southeast Missouri. Fish community attributes were compared to watershed features and to physical and chemical variables including metal concentrations in sediment pore water and fish. Ozark sculpin (Cottus hypselurus), rainbow darter (Etheostoma caeruleum), Ozark madtom (Noturus albater), and banded sculpin (Cottus carolinae) were the most abundant fishes collected. Species richness and density of riffle-dwelling benthic fishes were negatively correlated with metal concentrations in pore water and in fish. Sculpin densities were also negatively correlated with metal concentrations in pore water and in fish, but positively correlated with distance from mines and upstream watershed area. These findings indicate that metals associated with active lead-zinc mining adversely affect riffle-dwelling benthic fishes downstream of mining areas in the Viburnum Trend. Sculpins may be useful as a sentinel species for assessing mining-related impacts on fish communities.

Detection and identification of benthic communities and shoreline features in Biscayne Bay

NASA Technical Reports Server (NTRS)

Kolipinski, M. C.; Higer, A. L.

1970-01-01

Progress made in the development of a technique for identifying and delinating benthic and shoreline communities using multispectral imagery is described. Images were collected with a multispectral scanner system mounted in a C-47 aircraft. Concurrent with the overflight, ecological ground- and sea-truth information was collected at 19 sites in the bay and on the shore. Preliminary processing of the scanner imagery with a CDC 1604 digital computer provided the optimum channels for discernment among different underwater and coastal objects. Automatic mapping of the benthic plants by multiband imagery and the mapping of isotherms and hydrodynamic parameters by digital model can become an effective predictive ecological tool when coupled together. Using the two systems, it appears possible to predict conditions that could adversely affect the benthic communities. With the advent of the ERTS satellites and space platforms, imagery data could be obtained which, when used in conjunction with water-level and meteorological data, would provide for continuous ecological monitoring.

Mediterranean sponges from shallow subtidal rocky reefs: Cystoseira canopy vs barren grounds

NASA Astrophysics Data System (ADS)

Costa, Gabriele; Bertolino, Marco; Pinna, Stefania; Bonaviri, Chiara; Padiglia, Andrea; Zinni, Matteo; Pronzato, Roberto; Manconi, Renata

2018-07-01

Porifera richness was investigated in Cystoseira canopies vs barren grounds considering different substrates at 6 areas in the Central-Western Mediterranean Sea. In total 31 sponge taxa were recorded at 2-7 m depth and the sponge community structure and composition were characterized by a notably low richness with 25 taxa in the Cystoseira forest and 15 in the barren area. As for the sponge habitus, the massive sponges were dominant in both facies, whereas encrusting, and cavity dwelling sponges were found in higher numbers in the Cystoseira forest. Results revealed that rocky substrata seem to play a key role in driving the sponge community composition and diversity in both facies. In this work we explore the role of Cystoseira canopy as a suitable facies for sponges. Sponge assemblages were persistent, strongly resilient in space occupation and consequently support stability in both facies. Some species seem to be pre-adapted to live under the sub-optimal conditions of the barren grounds, i.e. the absence of the Cystoseira fronds shelter. This focus on sponge successful eco-etological performances in 'submarine deserts' such as barren areas shows features as shown in a few other sessile benthic invertebrates.

An Evaluation of Deep-Sea Benthic Megafaunal Communities in the Northern Gulf of Mexico Using Industrial ROVS and Video Imagery

NASA Astrophysics Data System (ADS)

Sharuga, S. M.; Benfield, M. C.

2016-02-01

The Deepwater Horizon oil spill in 2010 created a need for more thorough studies of deep-sea benthic biota, especially in soft-sediment areas of the Northern Gulf of Mexico (GoM). These benthic environments are increasingly vulnerable as demand and exploitation of resources in these areas grow. A 15°, 250 m long radial transect survey design was developed for use with industrial remotely operated vehicles (ROVs) to quantify benthic megafaunal communities in the vicinity of the MC252 well. Further, a customized database system was developed to explore natural and anthropogenic factors potentially responsible for influencing benthic megafaunal characteristics in this area. Biotic and abiotic characteristics were extracted from ROV videos collected one year after the Deepwater Horizon spill at seven study sites ranging from 2-39 km away from MC252, and located at depths from 850-1500 m. Seafloor environments differed amongst the sites, with differences found to be related to location and depth. Benthic megafauna in ten taxonomic categories were evaluated in order to compare benthic community characteristics, including density and diversity. Overall, community composition was found to be primarily related to depth and, to a lesser degree, site location. Results from this study suggest that depth, location, and the abiotic environment (ex. seafloor features, including anthropogenic disturbance) play important roles in the abundances and diversity of deep-sea benthic megafauna in the Northern GoM and should be considered when conducting environmental studies. This study demonstrates the utility of industrial-based deep-sea imaging platforms as a readily accessible option for collecting valuable information on deep-sea environments. These platforms exhibit excellent potential for use in determining baseline data and evaluating ecosystem changes and/or recovery.

Ecological Functioning in Two Mid-Atlantic Bight Submarine Canyons: Macrofauna Community Trends and the Role of Canyon Specific Processes

NASA Astrophysics Data System (ADS)

Robertson, C.; Bourque, J. R.; Davies, A. J.; Duineveld, G.; Mienis, F.; Brooke, S.; Ross, S. W.; Demopoulos, A. W.

2016-02-01

Submarine canyons are complex systems, acting as major conduits of organic matter along continental shelves and promoting gradients in food resources, turbidity flows, habitat heterogeneity, and areas of sediment resuspension and deposition. In the western North Atlantic, a large multidisciplinary program was conducted in two major Mid-Atlantic Bight (MAB) canyons (Baltimore and Norfolk canyons). This Atlantic Deepwater Canyons project was funded by BOEM, NOAA, and USGS. Here we investigate the `canyon effect' on benthic ecosystem ecology and functioning of two canyon systems by defining canyon specific processes influencing MAB shelf benthic community trends. Sediment cores were collected in 2012 and 2013 with a NIOZ box corer along the main axes ( 180-1200m) of Baltimore and Norfolk Canyon and at comparable depths on the adjacent continental slope. Whole community macrofaunal (>300 μm) abundance and biomass data provided insight into community trends across depth and biogeochemical gradients by coupling diversity metrics and biological trait analyses with sediment biogeochemistry and hydrodynamic data. The canyons exhibited clear differences in sediment profiles, hydrodynamic regimes and enrichment depocenters as well as significantly distinct infauna communities. Interestingly, both canyons showed bimodal distributions in abundances and diversity of infauna and a shallowing of species maxima which was not present on adjacent slopes. We hypothesize that physical canyon processes are important regulators in the depth of observed species maxima and community functioning on the MAB shelf, on local and regional scales. Unique sediment dynamics, organic enrichment, and hydrographic conditions were significant factors in structuring benthic community differences in MAB canyons The study provides a complete benthic infaunal appraisal of two canyon systems in the western Atlantic, incorporating biogeochemistry and oceanography to increase our understanding of canyon ecosystem ecology and provide baseline information on canyon functioning.

Mercury flux from salt marsh sediments: Insights from a comparison between 224Ra/228Th disequilibrium and core incubation methods

NASA Astrophysics Data System (ADS)

Shi, Xiangming; Mason, Robert P.; Charette, Matthew A.; Mazrui, Nashaat M.; Cai, Pinghe

2018-02-01

In aquatic environments, sediments are the main location of mercury methylation. Thus, accurate quantification of methylmercury (MeHg) fluxes at the sediment-water interface is vital to understanding the biogeochemical cycling of mercury, especially the toxic MeHg species, and their bioaccumulation. Traditional approaches, such as core incubations, are difficult to maintain at in-situ conditions during assays, leading to over/underestimation of benthic fluxes. Alternatively, the 224Ra/228Th disequilibrium method for tracing the transfer of dissolved substances across the sediment-water interface, has proven to be a reliable approach for quantifying benthic fluxes. In this study, the 224Ra/228Th disequilibrium and core incubation methods were compared to examine the benthic fluxes of both 224Ra and MeHg in salt marsh sediments of Barn Island, Connecticut, USA from May to August, 2016. The two methods were comparable for 224Ra but contradictory for MeHg. The radiotracer approach indicated that sediments were always the dominant source of both total mercury (THg) and MeHg. The core incubation method for MeHg produced similar results in May and August, but an opposite pattern in June and July, which suggested sediments were a sink of MeHg, contrary to the evidence of significant MeHg gradients between overlying water and porewater at the sediment-water interface. The potential reasons for such differences are discussed. Overall, we conclude that the 224Ra/228Th disequilibrium approach is preferred for estimating the benthic flux of MeHg and that sediment is indeed an important MeHg source in this marshland, and likely in other shallow coastal waters.

The Bering Strait Region: A Window into Changing Benthic Populations in Response to Varying Subarctic-Arctic Connectivity and Ecosystem Dynamics

NASA Astrophysics Data System (ADS)

Grebmeier, J. M.; Cooper, L. W.; Moore, S. E.

2016-02-01

A key ecological organizing principle for the northern Bering Sea and the adjoining southern Chukchi Sea just north of Bering Strait is that the shallow, seasonally productive waters lead to strong pelagic-benthic coupling to the sea floor, with deposition of fresh chlorophyll coinciding with the spring bloom as sea ice retreats. Both in situ production and advection of upstream phytodetritus to these regions support persistent biological hotspots that connect benthic prey to upper trophic benthivores. This northern marine ecosystem is dominated by marine macroinvertebrates (e.g. clams, polychaetes, sipunculids, and amphipods) that feed on the high production deposited rapidly to the seafloor, which in turn serve as food resources for diving mammals and seabirds, such as gray whales, bearded seals, eiders, and walruses. Between St. Lawrence Island and Bering Strait and northwards into the Chukchi Sea, the persistence of seasonal sea ice has significantly declined over the past two decades, and along with warming seawater temperatures, these changes have potential ramifications to ecosystem structure. Times-series data over the last 25 years indicate that these regions have experienced a northward shift in macrofaunal composition and a decline in core benthic biomass that matches patterns of reduced sea ice, warming seawater, and changing sediment grain size that relates to varying current patterns. This presentation will discuss these data in the context of both process studies from the region and results from the Distributed Biological Observatory (DBO), an international network of time series transects that is providing a framework to evaluate status and trends on a latitudinal bases in the Pacific Arctic region.

Development of a Model to Correct Multi-View Angle above Water Measurements for the Analysis of the Bidirectional Reflectance of Coral and Other Reef Substrates

NASA Astrophysics Data System (ADS)

Miller, I.; Forster, B. C.; Laffan, S. W.

2012-07-01

Spectral reflectance characteristics of substrates in a coral reef environment are often measured in the field by viewing a substrate at nadir. However, viewing a substrate from multiple angles would likely result in different spectral characteristics for most coral reef substrates and provide valuable information on structural properties. To understand the relationship between the morphology of a substrate and its spectral response it is necessary to correct the observed above-water radiance for the effects of atmosphere and water attenuation, at a number of view and azimuth angles. In this way the actual surface reflectance can be determined. This research examines the air-water surface interaction for two hypothetical atmospheric conditions (clear Rayleigh scattering and totally cloudcovered) and the global irradiance reaching the benthic surface. It accounts for both water scattering and absorption, with simplifications for shallow water conditions, as well as the additive effect of background reflectance being reflected at the water-air surface at angles greater than the critical refraction angle (~48°). A model was developed to correct measured above-water radiance along the refracted view angle for its decrease due to path attenuation and the "n squared law of radiance" and the additive surface reflectance. This allows bidirectional benthic surface reflectance and nadir-normalised reflectance to be determined. These theoretical models were adapted to incorporate above-water measures relative to a standard, diffuse, white reference panel. The derived spectral signatures of a number of coral and non-coral benthic surfaces compared well with other published results, and the signatures and nadir normalised reflectance of the corals and other benthic surface classes indicate good class separation.

Dynamics of nutrient cycling and related benthic nutrient and oxygen fluxes during a spring phytoplankton bloom in South San Francisco Bay (USA)

USGS Publications Warehouse

Grenz, C.; Cloern, J.E.; Hager, S.W.; Cole, B.E.

2000-01-01

Benthic oxygen uptake and nutrient releases of N, P and Si were measured weekly at 2 sites in South San Francisco Bay around the 1996 spring bloom. Exchanges across the sediment-water interface were estimated from whole core incubations performed in the laboratory at in situ temperature and in dark. Fluxes changed significantly on a weekly time scale. Over a period of 15 wk the fluxes of dissolved inorganic N, P and Si ranged from -40 to +200, 0 to 13 and from 30 to 400 ??mol m-2 h-1 respectively. Sediment oxygen demand increased from 10 before to 64 mg O2 m-2 h-1 just after the bloom period. During the bloom, nutrient fluxes represented about 20, 16 and 9% of the Si, P and N requirements for primary production. Before and after the bloom period, Si fluxes contributed up to 30 and > 100% of this requirement and P and N fluxes up to 15 and 50% respectively. Simple empirical models explain most of the spatial-temporal variability of benthic fluxes of Si, P and NH4 (but not NO3) from 3 predictor variables: sediment porosity, nutrient concentration in bottom waters and chlorophyll content of surficial sediments. These models show that algal blooms influence benthic-pelagic nutrient exchange through 2 processes: (1) depletion of nutrients from the water column (which enhances gradient-driven transports across the sediment-water interface) and (2) sedimentation of labile phytodetritus (which promotes remineralization in or on the surficial sediments). Rates and patterns of nutrient cycling were very different at the shallow and deep study sites, illustrating the challenge of extrapolating measurements of coupled algae-nutrient dynamics to whole ecosystems.

Historical changes in the structure and functioning of the benthic community in the lagoon of Venice

NASA Astrophysics Data System (ADS)

Pranovi, Fabio; Da Ponte, Filippo; Torricelli, Patrizia

2008-03-01

One of the main challenges in environmental management is how to manage the dynamics of natural environments. In this context, having information about historical changes of the structure of the biological communities could represent a useful tool to improve management strategies, contributing to refine the policy objectives, since it gives reference states with which to compare the present. The Venice lagoon represents an interesting case study, since it is a highly dynamic, but sensitive, environment which requires the adoption of prudent management. In its recent history the lagoon ecosystem has been exposed to different kinds of disturbance, from the discharge of pollutants and nutrients, to the invasion of alien species and the exploitation of its biological resources by using highly impacting fishing gears. The analysis of available data about the macro-benthic community, from 1935 to 2004, allows the description of changes of the community structure over almost 70 years, showing a sharp decrease in its diversity. In order to obtain information about its functioning, it is necessary to know how these changes have affected processes at the community and system level. In shallow water ecosystems, as the control is mainly due to the benthic compartment, variations in the structure of the benthic community can induce modifications in processes at different hierarchical levels. The trophic structure analysis has revealed major changes during the period; from a well-assorted structure in 1935, to an herbivore-detritivore dominated one in the 1990s, and finally to a filter feeder dominated structure during the last decade. This has produced variations in the secondary production and it has induced modifications in the type of the ecosystem control. These changes are discussed in the light of the dynamics of the main driving forces.

A not-so-big crisis: re-reading Silurian conodont diversity in a sequence-stratigraphic framework

NASA Astrophysics Data System (ADS)

Jarochowska, Emilia; Munnecke, Axel

2016-04-01

Conodonts are extensively used in Ordovician through Triassic biostratigraphy and fossil-based geochemistry. However, their distribution in rock successions is commonly taken at face value, without taking into account their diverse and poorly understood ecology. Multielement taxonomy, ontogenetic and environmental variability, difficulties in extraction, and relative rarity all contribute to the general lack of quantitative studies on conodont stratigraphic distribution and temporal turnover. With respect to Silurian conodonts, the concept of recurrent conodont extinction events - the so called Ireviken, Mulde and Lau events - has become a standard in the stratigraphic literature. The concept has been proposed based on qualitative observations of local extirpations of open-marine pelagic or nekto-benthic taxa and temporary dominance of shallow-water species in the Silurian succession of the Swedish island of Gotland. These changes coincided with positive carbon isotope excursions, abrupt facies shifts, "blooms" of benthic fauna, and changes in reef communities, which have all been combined into a general view of Silurian bio-geochemical events. This view posits a deterministic, reproducible pattern in Silurian conodont diversity, attributed to recurrent ecological or geochemical conditions. The growing body of sequence-stratigraphic interpretations across these events in Gotland and other sections worldwide indicate that in all cases the Silurian "events" are associated with rapid global regressions. This suggests that faunal changes such as the dominance of shallow-water, low-diversity conodont fauna and the increase of benthic invertebrate diversity and abundance represent predictable consequences of the variation in the completeness of the rock record and preservation potential of different environments. Our studies in Poland and Ukraine indicate that the magnitude of change in the taxonomic composition of conodont assemblages across the middle Silurian global regression and the hypothesized Mulde Event is proportional to the associated facies shift. Quantitative data on facies distribution of individual conodont species combined with sequence stratigraphic architecture provides a testable model for the impact of sea-level changes on perceived conodont diversity in a section or basin. This approach highlights the need for quantitative data on conodont distribution in their environmental context, their integration into conodont-based stratigraphy and geochemistry, and for the regular use of Occam's razor to interpretations of paleobiodiversity.

Distribution of living larger benthic foraminifera in littoral environments of the United Arab Emirates

NASA Astrophysics Data System (ADS)

Fiorini, Flavia; Lokier, Stephen W.

2015-04-01

The distribution of larger benthic foraminifera in Recent littoral environment of the United Arab Emirates (Abu Dhabi and Western regions) was investigated with the aim of understanding the response of those foraminifera to an increase in water salinity. For this purpose, 100 sediment samples from nearshore shelf, beach-front, channel, lagoon, and intertidal environment were collected. Sampling was undertaken at a water depth shallower than 15 m in water with a temperature of 22 to 35˚C, a salinity ranging from 40 to 60‰ and a pH of 8. Samples were stained with rose Bengal at the moment of sample collection in order to identify living specimens. The most abundant epiphytic larger benthic foraminifera in the studied area were Peneroplis pertusus and P. planatus with less common Spirolina areatina, S. aciculate and Sorites marginalis. The living specimens of the above mentioned species with normal test growing were particularly abundant in the nearshore shelf and lagoonal samples collected on seaweed. Dead specimens were concentrated in the coarser sediments of the beach-front, probably transported from nearby environments. Shallow coastal ponds are located in the upper intertidal zone and have a maximum salinity of 60‰ and contain abundant detached seagrass. Samples collected from these ponds possess a living foraminifera assemblage dominated by Peneroplis pertusus and P. planatus. High percentages (up to 50% of the stained assemblage) of Peneroplis presented abnormality in test growth, such as the presence of multiple apertures with reduced size, deformation in the general shape of the test, irregular suture lines and abnormal coiling. The high percentage of abnormal tests reflects natural environmental stress mainly caused by high and variable salinity. The unique presence of living epiphytic species, suggests that epiphytic foraminifera may be transported into the pond together with seagrass and continued to live in the pond. This hypothesis is supported by the fact that all of the foraminifera with abnormal test growth were adults and exhibiting a normal proloculus and normal growth of the earlier chambers.

Habitat and hydrology: assessing biological resources of the Suwannee River Estuarine System

USGS Publications Warehouse

Raabe, Ellen A.; Edwards, Randy E.; McIvor, Carole C.; Grubbs, Jack W.; Dennis, George D.

2007-01-01

The U.S. Geological Survey conducted a pilot integrated-science study during 2002 and 2003 to map, describe, and evaluate benthic and emergent habitats in the Suwannee River Estuary on the Gulf Coast of Florida. Categories of aquatic, emergent, and terrestrial habitats were determined from hyperspectral imagery and integrated with hydrologic data to identify estuarine fish habitats. Maps of intertidal and benthic habitat were derived from 12-band, 4-m resolution hyperspectral imagery acquired in September 2002. Hydrologic data were collected from tidal creeks during the winter of 2002-03 and the summer-fall of 2003. Fish were sampled from tidal creeks during March 2003 using rivulet nets, throw traps, and seine nets. Habitat characteristics, hydrologic data, and fish assemblages were compared for tidal creeks north and south of the Suwannee River. Tidal creeks north of the river had more shoreline edge and shallow habitat than creeks to the south. Tidal creeks south of the river were generally of lower salinity (fresher) and supported more freshwater marsh and submerged aquatic vegetation. The southern creeks tended to be deeper but less sinuous than the northern creeks. Water quality and inundation were evaluated with hydrologic monitoring in the creeks. In-situ gauges, recording pressure and temperature, documented a net discharge of brackish to saline groundwater into the tidal creeks with pronounced flow during low tide. Groundwater flow into the creeks was most prominent north of the river. Combined fish-sampling results showed an overall greater abundance of organisms and greater species richness in the southern creeks, nominally attributed a greater range in water quality. Fish samples were dominated by juvenile spot, grass shrimp, bay anchovy, and silverside. The short time frame for hydrologic monitoring and the one-time fish-sampling effort were insufficient for forming definitive conclusions. However, the combination of hyperspectral imagery and hydrologic data identified a range of habitat characteristics and differences in tidal-creek morphology. This endeavor related nearshore benthic habitat and hydrologic conditions with habitat suitability and fish assemblages and provides a template for similar applications in shallow and nearshore estuarine environments.

Baseline seabed habitat and biotope mapping for a proposed marine reserve

PubMed Central

Kelly, Michelle; Langlois, Tim J.; Costello, Mark J.

2015-01-01

Seabed mapping can quantify the extent of benthic habitats that comprise marine ecosystems, and assess the impact of fisheries on an ecosystem. In this study, the distribution of seabed habitats in a proposed no-take Marine Reserve along the northeast coast of Great Barrier Island, New Zealand, was mapped using underwater video combined with bathymetry and substratum data. As a result of the boundary extending to the 12 nautical mile Territorial Limit, it would have been the largest coastal Marine Reserve in the country. Recreational and commercial fisheries occur in the region and would be expected to affect species’ abundance. The seabed of the study area and adjacent coastal waters has been trawled up to five times per year. Benthic communities were grouped by multivariate cluster analysis into four biotope classes; namely (1) shallow water macroalgae Ecklonia sp. and Ulva sp. on rocky substrata (Eck.Ulv); and deeper (2) diverse epifauna of sponges and bryozoans on rocky substrata (Por.Bry), (3) brittle star Amphiura sp. and sea anemone Edwardsia sp. on muddy sand (Amph.Edw), and (4) hydroids on mud (Hyd). In biotopes Por.Bry, Amph.Edw and Hyd, there where boulders and rocks were present, and diverse sponge, bryozoan and coral communities. Fifty species were recorded in the deep water survey including significant numbers of the shallow-water hexactinellid glass sponges Symplectella rowi Dendy, 1924 and Rossella ijimai Dendy, 1924, the giant pipe demosponge Isodictya cavicornuta Dendy, 1924, black corals, and locally endemic gorgonians. The habitats identified in the waters to the northeast of Great Barrier Island are likely to be representative of similar depth ranges in northeast New Zealand. This study provides a baseline of the benthic habitats so that should the area become a Marine Reserve, any habitat change might be related to protection from fishing activities and impacts, such as recovery of epifauna following cessation of trawling. The habitat map may also be used to stratify future sampling that would aim to collect and identify epifauna and infauna for identification, and thus better describe the biodiversity of the area. PMID:26713230

Baseline seabed habitat and biotope mapping for a proposed marine reserve.

PubMed

Lee, Sonny T M; Kelly, Michelle; Langlois, Tim J; Costello, Mark J

2015-01-01

Seabed mapping can quantify the extent of benthic habitats that comprise marine ecosystems, and assess the impact of fisheries on an ecosystem. In this study, the distribution of seabed habitats in a proposed no-take Marine Reserve along the northeast coast of Great Barrier Island, New Zealand, was mapped using underwater video combined with bathymetry and substratum data. As a result of the boundary extending to the 12 nautical mile Territorial Limit, it would have been the largest coastal Marine Reserve in the country. Recreational and commercial fisheries occur in the region and would be expected to affect species' abundance. The seabed of the study area and adjacent coastal waters has been trawled up to five times per year. Benthic communities were grouped by multivariate cluster analysis into four biotope classes; namely (1) shallow water macroalgae Ecklonia sp. and Ulva sp. on rocky substrata (Eck.Ulv); and deeper (2) diverse epifauna of sponges and bryozoans on rocky substrata (Por.Bry), (3) brittle star Amphiura sp. and sea anemone Edwardsia sp. on muddy sand (Amph.Edw), and (4) hydroids on mud (Hyd). In biotopes Por.Bry, Amph.Edw and Hyd, there where boulders and rocks were present, and diverse sponge, bryozoan and coral communities. Fifty species were recorded in the deep water survey including significant numbers of the shallow-water hexactinellid glass sponges Symplectella rowi Dendy, 1924 and Rossella ijimai Dendy, 1924, the giant pipe demosponge Isodictya cavicornuta Dendy, 1924, black corals, and locally endemic gorgonians. The habitats identified in the waters to the northeast of Great Barrier Island are likely to be representative of similar depth ranges in northeast New Zealand. This study provides a baseline of the benthic habitats so that should the area become a Marine Reserve, any habitat change might be related to protection from fishing activities and impacts, such as recovery of epifauna following cessation of trawling. The habitat map may also be used to stratify future sampling that would aim to collect and identify epifauna and infauna for identification, and thus better describe the biodiversity of the area.

Inorganic carbon availability in benthic diatom communities: photosynthesis and migration.

PubMed

Marques da Silva, Jorge; Cruz, Sónia; Cartaxana, Paulo

2017-09-05

Diatom-dominated microphytobenthos (MPB) is the main primary producer of many intertidal and shallow subtidal environments, being therefore of critical importance to estuarine and coastal food webs. Owing to tidal cycles, intertidal MPB diatoms are subjected to environmental conditions far more variable than the ones experienced by pelagic diatoms (e.g. light, temperature, salinity, desiccation and nutrient availability). Nevertheless, benthic diatoms evolved adaptation mechanisms to these harsh conditions, including the capacity to move within steep physical and chemical gradients, allowing them to perform photosynthesis efficiently. In this contribution, we will review present knowledge on the effects of dissolved inorganic carbon (DIC) availability on photosynthesis and productivity of diatom-dominated MPB. We present evidence of carbon limitation of photosynthesis in benthic diatom mats and highly productive MPB natural communities. Furthermore, we hypothesize that active vertical migration of epipelic motile diatoms could overcome local depletion of DIC in the photic layer, providing the cells alternately with light and inorganic carbon supply. The few available longer-term experiments on the effects of inorganic carbon enrichment on the productivity of diatom-dominated MPB have yielded inconsistent results. Therefore, further studies are needed to properly assess the response of MPB communities to increased CO 2 and ocean acidification related to climate change.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

Paleontology and geochronology of the Long Beach core sites and monitoring wells, Long Beach, California

USGS Publications Warehouse

McDougall, Kristin; Hillhouse, John; Powell, Charles; Mahan, Shannon; Wan, Elmira; Sarna-Wojcicki, Andrei M.

2012-01-01

The U.S. Geological Survey's Focus on Quaternary Stratigraphy in Los Angeles (FOQUS-LA) project was a cooperative coring program between Federal, State, and local agencies. It was designed to provide a better understanding of earthquake potentials and to develop a stratigraphic model of the western Los Angeles Basin in California. The biostratigraphic, geochronologic, and paleoecologic analyses of eight wells drilled during the FOQUS-LA project are presented. These analyses are based on microfossils (benthic and planktic foraminifers), macrofossils, paleomagnetic stratigraphy, optically stimulated luminescence, thermoluminescence, radiocarbon dating, and tephrochronology. A geochronologic framework (incorporating paleomagnetism, luminescence, and tephrochronology) was used to calibrate the sequence stratigraphic units in the FOQUS-LA wells and also was used to calibrate the ages of the microfossil stage and zonal boundaries. The results of this study show that (1) the offshore California margin zones can be used in a nearshore setting, and (2) the California margin zonal scheme refines the chronostratigraphic resolution of the benthic foraminiferal biostratigraphic framework for the Pacific Coast. Benthic foraminiferal stages are modified by the recognition of an early Hallian substage, which is a faunal change recognized throughout the Los Angeles Basin. Although no detailed macrofossil zonations exist for the Quaternary of southern California, several species, whose distribution is regulated by the climatic conditions, are useful as secondary marker species in the shallower water deposits of the Los Angeles Basin.

Tracer-based characterization of hyporheic exchange and benthic biolayers in streams

NASA Astrophysics Data System (ADS)

Knapp, Julia L. A.; González-Pinzón, Ricardo; Drummond, Jennifer D.; Larsen, Laurel G.; Cirpka, Olaf A.; Harvey, Judson W.

2017-02-01

Shallow benthic biolayers at the top of the streambed are believed to be places of enhanced biogeochemical turnover within the hyporheic zone. They can be investigated by reactive stream tracer tests with tracer recordings in the streambed and in the stream channel. Common in-stream measurements of such reactive tracers cannot localize where the processing primarily takes place, whereas isolated vertical depth profiles of solutes within the hyporheic zone are usually not representative of the entire stream. We present results of a tracer test where we injected the conservative tracer bromide together with the reactive tracer resazurin into a third-order stream and combined the recording of in-stream breakthrough curves with multidepth sampling of the hyporheic zone at several locations. The transformation of resazurin was used as an indicator of metabolism, and high-reactivity zones were identified from depth profiles. The results from our subsurface analysis indicate that the potential for tracer transformation (i.e., the reaction rate constant) varied with depth in the hyporheic zone. This highlights the importance of the benthic biolayer, which we found to be on average 2 cm thick in this study, ranging from one third to one half of the full depth of the hyporheic zone. The reach-scale approach integrated the effects of processes along the reach length, isolating hyporheic processes relevant for whole-stream chemistry and estimating effective reaction rates.

Recolonization of the intertidal and shallow subtidal community following the 2008 eruption of Alaska’s Kasatochi Volcano

USGS Publications Warehouse

Jewett, S.C.; Drew, Gary S.

2014-01-01

The intertidal and nearshore benthic communities of Kasatochi Island are described following a catastrophic volcanic eruption in 2008. Prior to the eruption, the island was surrounded by a dense bed of canopy-forming dragon kelp Eualaria fistulosa which supported a productive nearshore community. The eruption extended the coastline of the island approximately 400 m offshore to roughly the 20 m isobath. One year following the eruption a reconnaissance survey found the intertidal zone devoid of life. Subtidally, the canopy kelp, as well as limited understory algal species and associated benthic fauna on the hard substratum, were buried by debris from the eruption. The resulting substrate was comprised almost entirely of medium and coarse sands with a depauperate benthic community. Comparisons of habitat and biological communities with other nearby Aleutian Islands and the Icelandic submarine volcanic eruption of Surtsey confirm dramatic reductions in flora and fauna consistent with the initial stages of recovery from a large-scale disturbance event. Four and five years following the eruption brief visits revealed dramatic intertidal and subtidal recolonization of the flora and fauna in some areas. Signs of nesting and fledging of young pigeon guillemots Cepphus columba suggest that the recovery of the nearshore biota may have begun affecting higher trophic levels. Recolonization or lack thereof was tied to bathymetric changes from coastal and nearshore erosion over the study period.

Effects of shelter and enrichment on the ecology and nutrient cycling of microbial communities of subtidal carbonate sediments.

PubMed

Forehead, Hugh I; Kendrick, Gary A; Thompson, Peter A

2012-04-01

The interactions between physical disturbances and biogeochemical cycling are fundamental to ecology. The benthic microbial community controls the major pathway of nutrient recycling in most shallow-water ecosystems. This community is strongly influenced by physical forcing and nutrient inputs. Our study tests the hypotheses that benthic microbial communities respond to shelter and enrichment with (1) increased biomass, (2) change in community composition and (3) increased uptake of inorganic nutrients from the water column. Replicate in situ plots were sheltered from physical disturbance and enriched with inorganic nutrients or left without additional nutrients. At t(0) and after 10 days, sediment-water fluxes of nutrients, O(2) and N(2) , were measured, the community was characterized with biomarkers. Autochthonous benthic microalgal (BMA) biomass increased 30% with shelter and a natural fivefold increase in nutrient concentration; biomass did not increase with greater enrichment. Diatoms remained the dominant taxon of BMA, suggesting that the sediments were not N or Si limited. Bacteria and other heterotrophic organisms increased with enrichment and shelter. Daily exchanges of inorganic nutrients between sediments and the water column did not change in response to shelter or nutrient enrichment. In these sediments, physical disturbance, perhaps in conjunction with nutrient enrichment, was the primary determinant of microbial biomass. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Recolonization of the intertidal and shallow subtidal community following the 2008 eruption of Alaska's Kasatochi Volcano

NASA Astrophysics Data System (ADS)

Jewett, S. C.; Drew, G. S.

2014-03-01

The intertidal and nearshore benthic communities of Kasatochi Island are described following a catastrophic volcanic eruption in 2008. Prior to the eruption, the island was surrounded by a dense bed of canopy-forming dragon kelp Eualaria fistulosa which supported a productive nearshore community. The eruption extended the coastline of the island approximately 400 m offshore to roughly the 20 m isobath. One year following the eruption a reconnaissance survey found the intertidal zone devoid of life. Subtidally, the canopy kelp, as well as limited understory algal species and associated benthic fauna on the hard substratum, were buried by debris from the eruption. The resulting substrate was comprised almost entirely of medium and coarse sands with a depauperate benthic community. Comparisons of habitat and biological communities with other nearby Aleutian Islands and the Icelandic submarine volcanic eruption of Surtsey confirm dramatic reductions in flora and fauna consistent with the initial stages of recovery from a large-scale disturbance event. Four and five years following the eruption brief visits revealed dramatic intertidal and subtidal recolonization of the flora and fauna in some areas. Signs of nesting and fledging of young pigeon guillemots Cepphus columba suggest that the recovery of the nearshore biota may have begun affecting higher trophic levels. Recolonization or lack thereof was tied to bathymetric changes from coastal and nearshore erosion over the study period.

Submarine groundwater discharges create unique benthic communities in a coastal sandy marine environment

NASA Astrophysics Data System (ADS)

Leitão, Francisco; Encarnação, João; Range, Pedro; Schmelz, Rüdiger M.; Teodósio, Maria A.; Chícharo, Luís

2015-09-01

In this study we assessed the small-scale effects of submarine groundwater discharges (SGD) on macrofaunal assemblages associated with shallow sandy sediments along the south coast of Portugal. Corer samples were collected in a (1) subtidal seep, (2) at the edge of the seep (periphery) and (3) in the surrounding area. Community structure varied across areas, with diversity, species richness and evenness generally low at seep relatively to the surrounding area. Community composition within the seep was reduced to a small number of taxa, although total abundance was similar between seeps and surrounding areas. The seep was characterized by a distinct hydrological environment, with lower salinity and pH, relative to the surroundings sandy areas. More than 93% of the benthic macrofauna in the seep was dominated by Lumbricillus lineatus (enchytraeid oligochaetes). This study is the first to record the presence of this euryaline species in Portuguese marine waters. In the surrounding area Spionidae Polychaetes and Bathyporeia sp. (Amphipoda) were the most frequent and abundant taxa. These findings provide evidence for a direct association between SGD effect and the composition of benthic marine assemblages. The patchy habitat created by groundwater seep allowed euryhaline species with short and fast recruitment times to occur in a fully marine environment. Whether this pattern is consistent, or only occurs when smooth favorable sea conditions are not superimposed on the groundwater effect remains uncertain.

Tracer-based characterization of hyporheic exchange and benthic biolayers in streams

USGS Publications Warehouse

Knapp, Julia L.A.; González-Pinzón, Ricardo; Drummond, Jennifer D.; Larsen, Laurel G.; Cirpka, Olaf A.; Harvey, Judson W.

2017-01-01

Shallow benthic biolayers at the top of the streambed are believed to be places of enhanced biogeochemical turnover within the hyporheic zone. They can be investigated by reactive stream tracer tests with tracer recordings in the streambed and in the stream channel. Common in-stream measurements of such reactive tracers cannot localize where the processing primarily takes place, whereas isolated vertical depth profiles of solutes within the hyporheic zone are usually not representative of the entire stream. We present results of a tracer test where we injected the conservative tracer bromide together with the reactive tracer resazurin into a third-order stream and combined the recording of in-stream breakthrough curves with multidepth sampling of the hyporheic zone at several locations. The transformation of resazurin was used as an indicator of metabolism, and high-reactivity zones were identified from depth profiles. The results from our subsurface analysis indicate that the potential for tracer transformation (i.e., the reaction rate constant) varied with depth in the hyporheic zone. This highlights the importance of the benthic biolayer, which we found to be on average 2 cm thick in this study, ranging from one third to one half of the full depth of the hyporheic zone. The reach-scale approach integrated the effects of processes along the reach length, isolating hyporheic processes relevant for whole-stream chemistry and estimating effective reaction rates.

Middle to Late Eocene paleoenvironmental changes in a marine transgressive sequence from the northern Tethyan margin (Adelholzen, Germany).

PubMed

Gebhardt, Holger; Ćorić, Stjepan; Darga, Robert; Briguglio, Antonino; Schenk, Bettina; Werner, Winfried; Andersen, Nils; Sames, Benjamin

The northern Tethyan margin is a key region for determining environmental changes associated with the collision of continental and oceanic tectonic plates and Alpine orogeny. Herein we investigated Middle to Late Eocene neritic to bathyal sediments deposited during an interval of unstable climatic conditions. In order to quantify paleoenvironmental changes, we developed a detailed age model based on biozonations of planktic foraminifera, calcareous nannoplankton, and larger benthic foraminifera. The section at Adelholzen covers the almost complete Lutetian Stage (calcareous nannoplankton zones NP15a-16, planktic foraminifera zones E8-11, shallow benthic (foraminifera) zones SBZ13-15) and large parts of the Priabonian Stage (NP18-20, E14/15), while the intermediate Bartonian Stage (NP17) is completely missing. Foraminiferal, calcareous nannoplankton, and macrofossil assemblages were analyzed for changes in paleo-water depth, mixing and stratification, paleo-primary productivity (pPP), food supply, and bottom water oxygenation. Paleo-water depth estimates range from 50 m (middle neritic, early Lutetian) to nearly 500 m (upper bathyal, late Priabonian). The combination of assemblage composition, planktic and benthic foraminiferal accumulation rates, and derived parameters (carbon-flux to sea floor, pPP) enabled us to identify a series of distinct paleoceanographic events of at least regional significance. Such events are characterized by considerable changes in primary productivity or reduced bottom water ventilation. Calculated pPP-values indicate oligotrophic conditions throughout.

Depositional environments of the Cache, Lower Lake, and Kelseyville Formations, Lake County, California

USGS Publications Warehouse

Rymer, Michael J.; Roth, Barry; Bradbury, J. Platt; Forester, Richard M.

1988-01-01

We describe the depositional environments of the Cache, Lower Lake, and Kelseyville Formations in light of habitat preferences of recovered mollusks, ostracodes, and diatoms. Our reconstruction of paleoenvironments for these late Cenozoic deposits provides a framework for an understanding of basin evolution and deposition in the Clear Lake region. The Pliocene and Pleistocene Cache Formation was deposited primarily in stream and debris flow environments; fossils from fine-grained deposits indicate shallow, fresh-water environments with locally abundant aquatic vegetation. The fine-grained sediments (mudstone and siltstone) were probably deposited in ponds in abandoned channels or shallow basins behind natural levees. The abandoned channels and shallow basins were associated with the fluvial systems responsible for deposition of the bulk of the technically controlled Cache Formation. The Pleistocene Lower Lake Formation was deposited in a water mass large enough to contain a variety of local environments and current regimes. The recovered fossils imply a lake with water depths of 1 to 5 m. However, there is strong support from habitat preferences of the recovered fossils for inferring a wide range of water depths during deposition of the Lower Lake Formation; they indicate a progressively shallowing system and the culmination of a desiccating lacustrine system. The Pleistocene Kelseyville Formation represents primarily lacustrine deposition with only minor fluvial deposits around the margins of the basin. Local conglomerate beds and fossil tree stumps in growth position within the basin indicate occasional widespread fluvial incursions and depositional hiatuses. The Kelseyville strata represent a large water mass with a muddy and especially fluid substrate having permanent or sporadic periods of anoxia. Central-lake anoxia, whether permanent or at irregular intervals, is the simplest way to account for the low numbers of benthic organisms recovered from the Kelseyville Formation. Similar low-oxygen conditions for benthic life are represented throughout the sedimentary history of Clear Lake. Water depths for the Kelseyville Formation of 10 to 30 m and 12 m near the margins of the basin are inferred both before and after fluvial incursions. These water-depth fluctuations cannot be correlated with major climatic changes as indicated by pollen and fossil leaves and cones; they may be due to faulting in this technically active region.

Seasonal population dynamics of the invasive polychaete genus Marenzelleria spp. in contrasting soft-sediment habitats

NASA Astrophysics Data System (ADS)

Kauppi, L.; Norkko, A.; Norkko, J.

2018-01-01

Three species of the invasive polychaete genus Marenzelleria are among the dominant benthic taxa in many, especially deeper, areas in the Baltic Sea. The population dynamics of the polychaetes in the Baltic are, however, still largely unknown. We conducted monthly samplings of the benthic communities and environmental parameters at five sites with differing depths and sediment characteristics in the northern Baltic Sea (59°50.896‧, 23°15.092‧) to study the population dynamics, productivity and growth of Marenzelleria spp. from April 2013 to June 2014. The species of Marenzelleria occurring at the study sites were identified by genetic analyses. At the deepest site (33 m) only M. arctia was present, while all three species were found at the shallower, muddy sites (up to 20 m depth). At the shallow (6 m) sandy site only M. viridis and M. neglecta occurred. The sites differed in the seasonal dynamics of the Marenzelleria spp. population, reflecting the different species identities. The muddy sites up to 20 m depth showed clear seasonal dynamics, with the population practically disappearing by winter, whereas more stable populations occurred at the deepest site and at the sandy site. The highest density, biomass and production were observed at the 20 m deep, organic-rich muddy site where all three species recruited. The seasonally very high densities are likely to have important consequences for organic matter processing, and species interactions at these sites. The observed high productivity of the populations has possibly facilitated their establishment, and considerably increased secondary production in especially the deeper areas.

How to react to shallow water hydrodynamics: The larger benthic foraminifera solution

PubMed Central

Briguglio, Antonino; Hohenegger, Johann

2016-01-01

Symbiont-bearing larger benthic foraminifera inhabit the photic zone to provide their endosymbiotic algae with light. Because of the hydrodynamic conditions of shallow water environments, tests of larger foraminifera can be entrained and transported by water motion. To resist water motion, these foraminifera have to build a test able to avoid transport or have to develop special mechanisms to attach themselves to substrate or to hide their test below sediment grains. For those species which resist transport by the construction of hydrodynamic convenient shapes, the calculation of hydrodynamic parameters of their test defines the energetic input they can resist and therefore the scenario where they can live in. Measuring the density, size and shape of every test, combined with experimental data, helps to define the best mathematical approach for the settling velocity and Reynolds number of every shell. The comparison between water motion at the sediment-water interface and the specimen-specific settling velocity helps to calculate the water depths at which, for a certain test type, transport, deposition and accumulation may occur. The results obtained for the investigated taxa show that the mathematical approach gives reliable results and can discriminate the hydrodynamic behaviour of different shapes. Furthermore, the study of the settling velocities, calculated for all the investigated taxa, shows that several species are capable to resist water motion and therefore they appear to be functionally adapted to the hydrodynamic condition of its specific environment. The same study is not recommended on species which resist water motion by adopting hiding or anchoring strategies to avoid the effect of water motion. PMID:27524855

Biostratigraphy and paleoecology of the Burdigalian-Serravallian sediments in Wadi Sudr (Gulf of Suez, Egypt): comparison with the Central Paratethys evolution

NASA Astrophysics Data System (ADS)

Ied, Ibrahim M.; Holcová, Katarína; Abd-Elshafy, Ezzat

2011-06-01

Two main Miocene facies were recorded in the Gulf of Suez area: a deep marine and a coastal facies. The analysed sections in the Wadi Sudr area belong to the marine facies. The Lower Miocene (Burdigalian) is represented by coastal, shallow marine sediments, rich in coral, algae, gastropods and large pectinids followed by Langhian open marine sediments and Serravallian lagoonal carbonates. The open marine sediments contain well preserved planktonic and benthic foraminifers and abundant ostracods. The parts of the sections containing foraminifers have been correlated with three planktonic foraminiferal zones (Praeorbulina glomerosa Zone, Orbulina Zone and Globorotalia praemenardii-Globorotalia peripheroronda Zone). Two benthic ecozones were defined (Heterolepa dutemplei-Laevidentalina elegans Zone and Bolivina compressa-Elphidium spp. Zone). Two cycles of sea-level changes can be distinguished and correlated with global sea-level cycles Bur5/Lan1 and Ser1. The first (Langhian) cycle culminated in open marine sublittoral to upper bathyal well aerated sediments. The second (Serravallian) cycle was shallower, littoral suboxic sediments were overlaid by euryhaline carbonates. The studied foraminifera-bearing sediments can be correlated with the lower and Middle Badenian of the Central Paratethys. Though the area of the Gulf of Suez and the Central Paratethys were situated in different climatic zones, and influenced by different tectonic events, the main paleoenvironmental events (sea-level changes, oxygen decrease, salinity changes) are comparable. This correspondence shows that the decisive factors triggering these events were global climatic events.

Vertical and horizontal genetic connectivity in Chromis verater, an endemic damselfish found on shallow and mesophotic reefs in the Hawaiian Archipelago and adjacent Johnston Atoll.

PubMed

Tenggardjaja, Kimberly A; Bowen, Brian W; Bernardi, Giacomo

2014-01-01

Understanding vertical and horizontal connectivity is a major priority in research on mesophotic coral ecosystems (30-150 m). However, horizontal connectivity has been the focus of few studies, and data on vertical connectivity are limited to sessile benthic mesophotic organisms. Here we present patterns of vertical and horizontal connectivity in the Hawaiian Islands-Johnston Atoll endemic threespot damselfish, Chromis verater, based on 319 shallow specimens and 153 deep specimens. The mtDNA markers cytochrome b and control region were sequenced to analyze genetic structure: 1) between shallow (< 30 m) and mesophotic (30-150 m) populations and 2) across the species' geographic range. Additionally, the nuclear markers rhodopsin and internal transcribed spacer 2 of ribosomal DNA were sequenced to assess connectivity between shallow and mesophotic populations. There was no significant genetic differentiation by depth, indicating high levels of vertical connectivity between shallow and deep aggregates of C. verater. Consequently, shallow and deep samples were combined by location for analyses of horizontal connectivity. We detected low but significant population structure across the Hawaiian Archipelago (overall cytochrome b: ΦST = 0.009, P = 0.020; control region: ΦST = 0.012, P = 0.009) and a larger break between the archipelago and Johnston Atoll (cytochrome b: ΦST = 0.068, P < 0.001; control region: ΦST = 0.116, P < 0.001). The population structure within the archipelago was driven by samples from the island of Hawaii at the southeast end of the chain and Lisianski in the middle of the archipelago. The lack of vertical genetic structure supports the refugia hypothesis that deep reefs may constitute a population reservoir for species depleted in shallow reef habitats. These findings represent the first connectivity study on a mobile organism that spans shallow and mesophotic depths and provide a reference point for future connectivity studies on mesophotic fishes.

Vertical and Horizontal Genetic Connectivity in Chromis verater, an Endemic Damselfish Found on Shallow and Mesophotic Reefs in the Hawaiian Archipelago and Adjacent Johnston Atoll

PubMed Central

Tenggardjaja, Kimberly A.; Bowen, Brian W.; Bernardi, Giacomo

2014-01-01

Understanding vertical and horizontal connectivity is a major priority in research on mesophotic coral ecosystems (30–150 m). However, horizontal connectivity has been the focus of few studies, and data on vertical connectivity are limited to sessile benthic mesophotic organisms. Here we present patterns of vertical and horizontal connectivity in the Hawaiian Islands-Johnston Atoll endemic threespot damselfish, Chromis verater, based on 319 shallow specimens and 153 deep specimens. The mtDNA markers cytochrome b and control region were sequenced to analyze genetic structure: 1) between shallow (<30 m) and mesophotic (30–150 m) populations and 2) across the species' geographic range. Additionally, the nuclear markers rhodopsin and internal transcribed spacer 2 of ribosomal DNA were sequenced to assess connectivity between shallow and mesophotic populations. There was no significant genetic differentiation by depth, indicating high levels of vertical connectivity between shallow and deep aggregates of C. verater. Consequently, shallow and deep samples were combined by location for analyses of horizontal connectivity. We detected low but significant population structure across the Hawaiian Archipelago (overall cytochrome b: ΦST = 0.009, P = 0.020; control region: ΦST = 0.012, P = 0.009) and a larger break between the archipelago and Johnston Atoll (cytochrome b: ΦST = 0.068, P<0.001; control region: ΦST = 0.116, P<0.001). The population structure within the archipelago was driven by samples from the island of Hawaii at the southeast end of the chain and Lisianski in the middle of the archipelago. The lack of vertical genetic structure supports the refugia hypothesis that deep reefs may constitute a population reservoir for species depleted in shallow reef habitats. These findings represent the first connectivity study on a mobile organism that spans shallow and mesophotic depths and provide a reference point for future connectivity studies on mesophotic fishes. PMID:25517964

The Application of Support Vector Machine (svm) Using Cielab Color Model, Color Intensity and Color Constancy as Features for Ortho Image Classification of Benthic Habitats in Hinatuan, Surigao del Sur, Philippines

NASA Astrophysics Data System (ADS)

Cubillas, J. E.; Japitana, M.

2016-06-01

This study demonstrates the application of CIELAB, Color intensity, and One Dimensional Scalar Constancy as features for image recognition and classifying benthic habitats in an image with the coastal areas of Hinatuan, Surigao Del Sur, Philippines as the study area. The study area is composed of four datasets, namely: (a) Blk66L005, (b) Blk66L021, (c) Blk66L024, and (d) Blk66L0114. SVM optimization was performed in Matlab® software with the help of Parallel Computing Toolbox to hasten the SVM computing speed. The image used for collecting samples for SVM procedure was Blk66L0114 in which a total of 134,516 sample objects of mangrove, possible coral existence with rocks, sand, sea, fish pens and sea grasses were collected and processed. The collected samples were then used as training sets for the supervised learning algorithm and for the creation of class definitions. The learned hyper-planes separating one class from another in the multi-dimensional feature space can be thought of as a super feature which will then be used in developing the C (classifier) rule set in eCognition® software. The classification results of the sampling site yielded an accuracy of 98.85% which confirms the reliability of remote sensing techniques and analysis employed to orthophotos like the CIELAB, Color Intensity and One dimensional scalar constancy and the use of SVM classification algorithm in classifying benthic habitats.

Shift in the species composition of the diatom community in the eutrophic Mauritanian coastal upwelling: Results from a multi-year sediment trap experiment (2003-2010)

NASA Astrophysics Data System (ADS)

Romero, Oscar E.; Fischer, Gerhard

2017-12-01

A multiannual, continuous sediment trap experiment was conducted at the mooring site CBeu (Cape Blanc eutrophic, ca. 20 °N, ca. 18 °W; trap depth = 1256-1296 m) in the high-productive Mauritanian coastal upwelling. Here we present fluxes and the species-specific composition of the diatom assemblage, and fluxes of biogenic silica (BSi, opal) and total organic carbon (TOC) for the time interval June 2003-Feb 2010. Flux ranges of studied parameters are (i) total diatoms = 1.2 ∗ 108-4.7 ∗ 104 valves m-2 d-1 (average = 5.9 × 106 valves ± 1.4 × 107); (ii) BSi = 296-0.5 mg m-2 d-1 (average = 41.1 ± 53.5 mg m-2 d-1), and (iii) TOC = 97-1 mg m-2 d-1 (average = 20.5 ± 17.8 mg m-2 d-1). Throughout the experiment, the overall good match of total diatom, BSi and TOC fluxes is reasonably consistent and reflects well the temporal occurrence of the main Mauritanian upwelling season. Spring and summer are the most favorable seasons for diatom production and sedimentation: out of the recorded 14 diatom maxima of different magnitude, six occurred in spring and four in summer. The diverse diatom community at site CBeu is composed of four main assemblages: benthic, coastal upwelling, coastal planktonic and open-ocean diatoms, reflecting different productivity conditions and water masses. A striking feature of the temporal variability of the diatom populations is the persistent pattern of seasonal groups' contribution: benthic and coastal upwelling taxa dominated during the main upwelling season in spring, while open-ocean diatoms were more abundant in fall and winter, when the upper water column becomes stratified, upwelling relaxes and productivity decreases. The relative abundance of benthic diatoms strongly increased after 2006, yet their spring-summer contribution remained high until the end of the trap experiment. The occurrence of large populations of benthic diatoms at the hemipelagic CBeu site is interpreted to indicate transport from shallow waters via nepheloid layers. We argue that a significant amount of valves, BSi and TOC produced in waters overlying the Banc d'Arguin and the Mauritanian shelf is effectively transported to the CBeu trap in intermediate waters at the outer Mauritanian slope. The impact of the intermediate and bottom-near nepheloid layers-driven transport in the transfer of valves and bulk particulates and its potential contribution to the export of biogenic materials from the shelf and uppermost slope might play a significant role in hemipelagial fluxes off Mauritania.

The importance of offshore origination revealed through ophiuroid phylogenomics.

PubMed

Bribiesca-Contreras, Guadalupe; Verbruggen, Heroen; Hugall, Andrew F; O'Hara, Timothy D

2017-07-12

Our knowledge of macro-evolutionary processes in the deep sea is poor, leading to much speculation about whether the deep sea is a source or sink of evolutionary adaptation. Here, we use a phylogenetic approach, on large molecular (688 species, 275 kbp) and distributional datasets (104 513 records) across an entire class of marine invertebrates (Ophiuroidea), to infer rates of bathymetric range shift over time between shallow and deep water biomes. Biome conservation is evident through the phylogeny, with the majority of species in most clades distributed within the same bathome. Despite this, bathymetric shifts have occurred. We inferred from ancestral reconstructions that eurybathic or intermediate distributions across both biomes were a transitional state and direct changes between shallow and deep sea did not occur. The macro-evolutionary pattern of bathome shift appeared to reflect micro-evolutionary processes of bathymetric speciation. Results suggest that most of the oldest clades have a deep-sea origin, but multiple colonization events indicate that the evolution of this group conforms neither to a simple onshore-offshore hypothesis, nor the opposite pattern. Both shallow and deep bathomes have played an important role in generating the current diversity of this major benthic class. © 2017 The Author(s).

Taxonomy and distribution of Terebellides (Polychaeta: Trichobranchidae) in the northern South China Sea, with description of three new species.

PubMed

Zhang, Jinghuai; Hutchings, Pat

2018-02-02

Benthic ecology monitoring in the northern South China Sea revealed many individuals of the polychaete genus Terebellides (Annelida), which are common in soft sediments in shallow waters (4.5-41.0 m). Three new species of Terebellides are described, including T. guangdongensis n. sp., T. yangi n. sp. and T. ectopium n. sp. Terebellides guangdongensis n. sp. is mainly found in Guangdong waters. Terebellides yangi n. sp. and T. ectopium n. sp. are mainly found in Beibu Gulf. A key to all described species of Terebellides from the Northwestern Pacific is given.

Burdigalian turbid water patch reef environment revealed by larger benthic foraminifera

NASA Astrophysics Data System (ADS)

Novak, V.; Renema, W.; Throughflow-project

2012-04-01

Ancient isolated patch reefs outcropping from siliciclastic sediments are a trademark for the Miocene carbonate deposits occurring in East Kalimantan, Indonesia. They develop in transitional shelf sediments deposited between deltaic and deep marine deposits (Allen and Chambers, 1998). The Batu Putih Limestone (Wilson, 2005) and similar outcrops in adjacent areas have been characterized as shallow water carbonates influenced by high siliciclastic input, showing low relief patch reefs in turbid waters. Larger benthic foraminifera (LBF) are excellent markers for biochronology and paleoenvironmental reconstruction. This study aims to reveal age and paleoenvironment of a shallow water carbonate patch reef developed in mixed depositional system by using LBF and microfacies analysis. The studied section is located near Bontang, East Kalimantan, and is approximately 80 m long and 12 m high. It is placed within Miocene sediments in the central part of the Kutai Basin. Patch reef and capping sediments were logged through eight transects along section and divided into nine different lithological units from which samples were collected. Thin sections and isolated specimens of larger benthic foraminifera were analyzed and recognized to species level (where possible) providing age and environmental information. Microfacies analysis of thin sections included carbonate classification (textural scheme of Dunham, 1962) and assemblage composition of LBF, algae and corals relative abundance. Three environmentally indicative groups of LBF were separated based on test morphology, habitat or living relatives (Hallock and Glenn, 1986). Analysed foraminifera assemblage suggests Burdigalian age (Tf1). With use of microfacies analysis nine successive lithological units were grouped into five facies types. Paleoenvironmental reconstruction of LBF fossil assemblage indicate two cycles of possible deepening recorded in the section. Based on high muddy matrix ratio in analyzed thin-sections we still cannot conclude whether they were deeper water assemblage, or that they occurred in shallower water and influenced by turbid conditions as the result of terrigenous input. According to preliminary analysis and siliciclastic content in the sediments the later one should be more likely. Further work will include additional fossil groups analysis (corals, algae and bryozoans), detailed petrographical analysis and Strontium isotope stratigraphy. Allen, G.P., and Chambers, J.L.C. (1998): Sedimentation in the Modern and Miocene Mahakam Delta. Indonesian Petroleum Association, Jakarta, Indonesia, 236 p. Dunham, R.J. (1962): Classification of carbonate rocks according to their depositional texture. In: Ham, W.E., ed., Classification of Carbonate Rocks: American Association of Petroleum Geologists Memoir, v. 1, p. 108-121. Hallock, P. and Glenn, C.E. (1986): Larger Foraminifera: A tool for paleoenvironmental analysis of Cenozoic carbonate depositional facies. Palaios 1, 55-64. Wilson, M.E.J. (2005): Development of equatorial delta-front patch reefs during the Neogene, Borneo. - Journal of Sedimentary Research, 75(1): 114-133.

Evolution of the Tethyan Seaway during the Oligocene and Miocene: Constraints from foraminiferal faunas of the Qom Formation, Iran

NASA Astrophysics Data System (ADS)

Dabaghi sadr, Fatemeh; Schmiedl, Gerhard

2016-04-01

The Qom Formation was deposited in the central Iranian back-arc basin during the Oligocene-Miocene and documents the closure of the Tethyan Seaway. Based on sedimentological data, various depositional models have been presented for the Oligocene-Miocene successions of central Iran, Sanandaj-Sirjan and Urumieh Dokhtar magmatic arc provinces in Iran. In this study, foraminiferal faunas were studied based on a total of 146 samples from the Molkabad section, located northwest of Molkabad Mountains, and from the Navab Anticline section, located south of Kashan area. Changes in the composition of the benthic foraminiferal fauna were used to reconstruct the paleoenvironmental evolution during deposition of the Qom Formation .The Molkabad section mainly consists of limestones, calcareous marls, marls, and gypsum-bearing marls with a total thickness of 760 meters and the Navab anticline section consists of sandstone, red shale, gypsy marl and conglomerate. The Qom Formation at both sections overlies Eocene rocks with an unconformity. The studied sediments contain a variety of red algae, bryozoans and benthic and planktonic foraminifers. The distribution of index larger benthic foraminifers in Molkabad section suggests a late Oligocene (Chattian) to early Miocene (Aquitanian-Burdigalian) age, comprising the Miolepidociyclina-Miogypsinoides and Borelis melo curdica-Meandropsina iranica-schlumbergerina assemblage zones .The small benthic faunas of the Molkabad section represent typical inner-neritic depositional environments supported by the predominance of marls and algal and bryozoan limestones in this section. The preliminary bathymetric reconstruction suggests deposition of the succession in water depths commonly shallower than 50 m. The estimated values of water depth range between 36 and 94 m but the strong predominance of the genera Ammonia and Elphidium points to an even lower water depth in some intervals. For Navab anticline section the distribution of the index larger benthic foraminifers indicate a Lower Miocene (Aquitanian-Burdigalian) age. The biostratigraphic zonation is consistent with existing data from other sections of the Qom formation and appears equivalent to biozones reported from the lower and upper parts of the Asmari Formation. The textural and faunal analyses allowed for the distinction of eight microfacies for the Molkabad section representing inner and middle ramp depositional environments. Eleven different microfacies were distinguished for the Navab Anticline section representing inner, middle and outer ramp depositional environments. Key word: Qom Formation, Central basin, Oligocene-Miocene Benthic Foraminifera, Tethyan Seaway, Iran

Between-Habitat Variation of Benthic Cover, Reef Fish Assemblage and Feeding Pressure on the Benthos at the Only Atoll in South Atlantic: Rocas Atoll, NE Brazil

PubMed Central

Longo, G. O.; Morais, R. A.; Martins, C. D. L.; Mendes, T. C.; Aued, A. W.; Cândido, D. V.; de Oliveira, J. C.; Nunes, L. T.; Fontoura, L.; Sissini, M. N.; Teschima, M. M.; Silva, M. B.; Ramlov, F.; Gouvea, L. P.; Ferreira, C. E. L.; Segal, B.; Horta, P. A.; Floeter, S. R.

2015-01-01

The Southwestern Atlantic harbors unique and relatively understudied reef systems, including the only atoll in South Atlantic: Rocas atoll. Located 230 km off the NE Brazilian coast, Rocas is formed by coralline red algae and vermetid mollusks, and is potentially one of the most “pristine” areas in Southwestern Atlantic. We provide the first comprehensive and integrative description of the fish and benthic communities inhabiting different shallow reef habitats of Rocas. We studied two contrasting tide pool habitats: open pools, which communicate with the open ocean even during low tides, thus more exposed to wave action; and closed pools, which remain isolated during low tide and are comparatively less exposed. Reef fish assemblages, benthic cover, algal turfs and fish feeding pressure on the benthos remarkably varied between open and closed pools. The planktivore Thalassoma noronhanum was the most abundant fish species in both habitats. In terms of biomass, the lemon shark Negaprion brevirostris and the omnivore Melichtys niger were dominant in open pools, while herbivorous fishes (mainly Acanthurus spp.) prevailed in closed pools. Overall benthic cover was dominated by algal turfs, composed of articulated calcareous algae in open pools and non-calcified algae in closed pools. Feeding pressure was dominated by acanthurids and was 10-fold lower in open pools than in closed pools. Besides different wave exposure conditions, such pattern could also be related to the presence of sharks in open pools, prompting herbivorous fish to feed more in closed pools. This might indirectly affect the structure of reef fish assemblages and benthic communities. The macroalgae Digenea simplex, which is uncommon in closed pools and abundant in the reef flat, was highly preferred in herbivory assays, indicating that herbivory by fishes might be shaping this distribution pattern. The variations in benthic and reef fish communities, and feeding pressure on the benthos between open and closed pools suggest that the dynamics in open pools is mostly driven by physical factors and the tolerance of organisms to harsh conditions, while in closed pools direct and indirect effects of species interactions also play an important role. Understanding the mechanisms shaping biological communities and how they scale-up to ecosystem functioning is particularly important on isolated near-pristine systems where natural processes can still be studied under limited human impact. PMID:26061735

Between-Habitat Variation of Benthic Cover, Reef Fish Assemblage and Feeding Pressure on the Benthos at the Only Atoll in South Atlantic: Rocas Atoll, NE Brazil.

PubMed

Longo, G O; Morais, R A; Martins, C D L; Mendes, T C; Aued, A W; Cândido, D V; de Oliveira, J C; Nunes, L T; Fontoura, L; Sissini, M N; Teschima, M M; Silva, M B; Ramlov, F; Gouvea, L P; Ferreira, C E L; Segal, B; Horta, P A; Floeter, S R

2015-01-01

The Southwestern Atlantic harbors unique and relatively understudied reef systems, including the only atoll in South Atlantic: Rocas atoll. Located 230 km off the NE Brazilian coast, Rocas is formed by coralline red algae and vermetid mollusks, and is potentially one of the most "pristine" areas in Southwestern Atlantic. We provide the first comprehensive and integrative description of the fish and benthic communities inhabiting different shallow reef habitats of Rocas. We studied two contrasting tide pool habitats: open pools, which communicate with the open ocean even during low tides, thus more exposed to wave action; and closed pools, which remain isolated during low tide and are comparatively less exposed. Reef fish assemblages, benthic cover, algal turfs and fish feeding pressure on the benthos remarkably varied between open and closed pools. The planktivore Thalassoma noronhanum was the most abundant fish species in both habitats. In terms of biomass, the lemon shark Negaprion brevirostris and the omnivore Melichtys niger were dominant in open pools, while herbivorous fishes (mainly Acanthurus spp.) prevailed in closed pools. Overall benthic cover was dominated by algal turfs, composed of articulated calcareous algae in open pools and non-calcified algae in closed pools. Feeding pressure was dominated by acanthurids and was 10-fold lower in open pools than in closed pools. Besides different wave exposure conditions, such pattern could also be related to the presence of sharks in open pools, prompting herbivorous fish to feed more in closed pools. This might indirectly affect the structure of reef fish assemblages and benthic communities. The macroalgae Digenea simplex, which is uncommon in closed pools and abundant in the reef flat, was highly preferred in herbivory assays, indicating that herbivory by fishes might be shaping this distribution pattern. The variations in benthic and reef fish communities, and feeding pressure on the benthos between open and closed pools suggest that the dynamics in open pools is mostly driven by physical factors and the tolerance of organisms to harsh conditions, while in closed pools direct and indirect effects of species interactions also play an important role. Understanding the mechanisms shaping biological communities and how they scale-up to ecosystem functioning is particularly important on isolated near-pristine systems where natural processes can still be studied under limited human impact.

A 27,000 year record of Red Sea Outflow: Implication for timing of post-glacial monsoon intensification

NASA Astrophysics Data System (ADS)

Naqvi, Wajih A.; Fairbanks, Richard G.

We reconstruct here the history of the Red Sea Outflow (RSO) over the past 27,000 years from an AMS 14C-dated high-resolution δ13C record of benthic foraminifera from the inner Gulf of Aden assuming the dominance of circulation over productivity in regulating benthic δ13C. The results reveal that, following a period of suppressed RSO due to shallow sill 24,000-18,000 yr BP, the Red Sea was vigorously flushed for ˜2,000 years before a major monsoon intensification caused the cessation of deep water formation from 15,500 to 7,300 yr BP. It appears that the monsoon intensification did lag behind insolation until 15,500 yr BP. Between 15,500 and the present, however, there was no lag in conflict with the previous reports, implying a negligible dampening effect of continental albedo during this period. However, since our analysis is confined to a single depth horizon and our record is sensitive to sea level, it has some limitations as an indicator of monsoon intensity.

Five new species and one new genus of recent miliolid foraminifera from Raja Ampat (West Papua, Indonesia)

PubMed Central

2016-01-01

Raja Ampat is an archipelago of about 1,500 small islands located northwest off the Bird’s Head Peninsula of Indonesia’s West Papua province. It is part of the Coral Triangle, a region recognized as the “epicenter” of tropical marine biodiversity. In the course of a large-scale survey on shallow benthic foraminifera we have discovered one new genus and five new species of recent miliolid benthic foraminifera from the highly diverse reefal and nearshore environments. The new fischerinid genus Dentoplanispirinella is characterized by its planispiral coiling and by the presence of a simple tooth, that differentiate it from Planispirinella Wiesner. It is represented in our sample material by the new species Dentoplanispirinella occulta. The other four species described herein are Miliolinella moia, Miliolinella undina, Triloculina kawea and Siphonaperta hallocki. All new species are comparatively rare and occur sporadically in the sample material. Detailed morphological descriptions, scanning electron microscopy pictures of complete and dissected specimens as well as micro-computed tomography images are provided. PMID:27366652

California State Waters Map Series Data Catalog

USGS Publications Warehouse

Golden, Nadine E.

2013-01-01

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California's State Waters. The CSMP approach is to create highly detailed seafloor maps and associated data layers through the collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. CSMP has divided coastal California into 110 map blocks (fig. 1), each to be published individually as USGS Scientific Investigations Maps (SIMs) at a scale of 1:24,000. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the seafloor geology and shallow (to about 100 m) subsurface geology. This CSMP data catalog contains much of the data used to prepare the SIMs in the California State Waters Map Series. Other data that were used to prepare the maps were compiled from previously published sources (for example, onshore geology) and, thus, are not included herein.

Trace elements in Antarctic fish species and the influence of foraging habitats and dietary habits on mercury levels.

PubMed

Goutte, Aurélie; Cherel, Yves; Churlaud, Carine; Ponthus, Jean-Pierre; Massé, Guillaume; Bustamante, Paco

2015-12-15

This study aims at describing and interpreting concentration profiles of trace elements in seven Antarctic fish species (N=132 specimens) off Adélie Land. Ichthyofauna plays a key role in the Antarctic ecosystem, as they occupy various ecological niches, including cryopelagic (ice-associated), pelagic, and benthic habitats. Firstly, trace element levels in the studied specimens were similar to those previously observed in fish from the Southern Ocean. Apart from manganese and zinc, concentrations of arsenic, cadmium, copper, iron, mercury (Hg), nickel, selenium and silver differed among fish species. Muscle δ(13)C and δ(15)N values were determined to investigate whether the fish foraging habitats and dietary habits could explain Hg levels. Species and foraging habitat (δ(13)C) were strong predictors for variations of Hg concentrations in muscle tissues. The highest Hg contamination was found in shallow benthic fish compared to cryopelagic and pelagic fish. This pattern was likely due to the methylation of Hg in the coastal sediment and the photodemethylation by ultraviolet radiation in surface waters. Copyright © 2015 Elsevier B.V. All rights reserved.

Mapping benthic macroalgal communities in the coastal zone using CHRIS-PROBA mode 2 images

NASA Astrophysics Data System (ADS)

Casal, G.; Kutser, T.; Domínguez-Gómez, J. A.; Sánchez-Carnero, N.; Freire, J.

2011-09-01

The ecological importance of benthic macroalgal communities in coastal ecosystems has been recognised worldwide and the application of remote sensing to study these communities presents certain advantages respect to in situ methods. The present study used three CHRIS-PROBA images to analyse macroalgal communities distribution in the Seno de Corcubión (NW Spain). The use of this sensor represent a challenge given that its design, build and deployment programme is intended to follow the principles of the "faster, better, cheaper". To assess the application of this sensor to macroalgal mapping, two types of classifications were carried out: Maximum Likelihood and Spectral Angle Mapper (SAM). Maximum Likelihood classifier showed positive results, reaching overall accuracy percentages higher than 90% and kappa coefficients higher than 0.80 for the bottom classes shallow submerged sand, deep submerged sand, macroalgae less than 5 m and macroalgae between 5 and 10 m depth. The differentiation among macroalgal groups using SAM classifications showed positive results for green seaweeds although the differentiation between brown and red algae was not clear in the study area.

Functional response of an adapted subtidal macrobenthic community to an oil spill: macrobenthic structure and bioturbation activity over time throughout an 18-month field experiment.

PubMed

Gilbert, Franck; Stora, Georges; Cuny, Philippe

2015-10-01

An experimental oil spill was carried out in order to assess in situ responses of a macrobenthic community of shallow subtidal sediments historically exposed to petroleum contamination. Both structural and functional (bioturbation activity) parameters of the community, subjected or not to a pulse acute contamination (25,000 ppm), were studied for 18 months. No difference in the community structure was detected between contaminated and control sediments, from 6 to 18 months of experimentation. Vertical distributions of organisms, however, were affected by the presence of oil contamination leading to a deeper burial of some polychaete species. In the same time, changes in sediment-reworking activity and more especially a deeper particle burying in sediments subjected to acute oil contamination were shown. These results highlight the need to complete the analysis of community structure by assessing functional aspects, such as bioturbation activity, a process integrating various aspects of benthic behaviour (e.g. feeding, locomotion, burrow building) in order to estimate real (structural and functional) and long-term effects of oil contamination on benthic communities.

A short-term look at potential changes in Lake Michigan slimy sculpin diets

USGS Publications Warehouse

French, John R. P.; Stickel, Richard G.; Stockdale, Beth A.; Black, M. Glen

2010-01-01

Diporeia hoyi and Mysis relicta are the most important prey items of slimy sculpins (Cottus cognatus) in the Great Lakes. Slimy sculpins were collected from dreissenid-infested bottoms off seven Lake Michigan ports at depths of 27–73 m in fall 2003 to study their lake-wide diets. Relatively large dreissenid biomass occurred at depths of 37- and 46-m. Quagga mussels (Dreissena bugnesis) composed at least 50% of dreissenid biomass at Manistique, Saugatuck, and Sturgeon Bay. Mysis accounted for 82% of the sculpin diet by dry weight at eastern Lake Michigan while Diporeia composed 54–69% of the diet at western Lake Michigan and dominated the diets of slimy sculpins at all sites deeper than 46 m. In northern Lake Michigan, this diet study in new sites showed that slimy sculpin consumed more prey with low energy contents, especially chironomids, than Mysis and Diporeia in shallow sites (depth <55 m). We recommend diet studies on sedentary benthic fishes to be conducted along perimeters of the Great Lakes to observe changes in their diets that may be impacted by changing benthic macroinvertebrate communities.

High resolution multibeam and hydrodynamic datasets of tidal channels and inlets of the Venice Lagoon

NASA Astrophysics Data System (ADS)

Madricardo, Fantina; Foglini, Federica; Kruss, Aleksandra; Ferrarin, Christian; Pizzeghello, Nicola Marco; Murri, Chiara; Rossi, Monica; Bajo, Marco; Bellafiore, Debora; Campiani, Elisabetta; Fogarin, Stefano; Grande, Valentina; Janowski, Lukasz; Keppel, Erica; Leidi, Elisa; Lorenzetti, Giuliano; Maicu, Francesco; Maselli, Vittorio; Mercorella, Alessandra; Montereale Gavazzi, Giacomo; Minuzzo, Tiziano; Pellegrini, Claudio; Petrizzo, Antonio; Prampolini, Mariacristina; Remia, Alessandro; Rizzetto, Federica; Rovere, Marzia; Sarretta, Alessandro; Sigovini, Marco; Sinapi, Luigi; Umgiesser, Georg; Trincardi, Fabio

2017-09-01

Tidal channels are crucial for the functioning of wetlands, though their morphological properties, which are relevant for seafloor habitats and flow, have been understudied so far. Here, we release a dataset composed of Digital Terrain Models (DTMs) extracted from a total of 2,500 linear kilometres of high-resolution multibeam echosounder (MBES) data collected in 2013 covering the entire network of tidal channels and inlets of the Venice Lagoon, Italy. The dataset comprises also the backscatter (BS) data, which reflect the acoustic properties of the seafloor, and the tidal current fields simulated by means of a high-resolution three-dimensional unstructured hydrodynamic model. The DTMs and the current fields help define how morphological and benthic properties of tidal channels are affected by the action of currents. These data are of potential broad interest not only to geomorphologists, oceanographers and ecologists studying the morphology, hydrodynamics, sediment transport and benthic habitats of tidal environments, but also to coastal engineers and stakeholders for cost-effective monitoring and sustainable management of this peculiar shallow coastal system.

High resolution multibeam and hydrodynamic datasets of tidal channels and inlets of the Venice Lagoon

PubMed Central

Madricardo, Fantina; Foglini, Federica; Kruss, Aleksandra; Ferrarin, Christian; Pizzeghello, Nicola Marco; Murri, Chiara; Rossi, Monica; Bajo, Marco; Bellafiore, Debora; Campiani, Elisabetta; Fogarin, Stefano; Grande, Valentina; Janowski, Lukasz; Keppel, Erica; Leidi, Elisa; Lorenzetti, Giuliano; Maicu, Francesco; Maselli, Vittorio; Mercorella, Alessandra; Montereale Gavazzi, Giacomo; Minuzzo, Tiziano; Pellegrini, Claudio; Petrizzo, Antonio; Prampolini, Mariacristina; Remia, Alessandro; Rizzetto, Federica; Rovere, Marzia; Sarretta, Alessandro; Sigovini, Marco; Sinapi, Luigi; Umgiesser, Georg; Trincardi, Fabio

2017-01-01

Tidal channels are crucial for the functioning of wetlands, though their morphological properties, which are relevant for seafloor habitats and flow, have been understudied so far. Here, we release a dataset composed of Digital Terrain Models (DTMs) extracted from a total of 2,500 linear kilometres of high-resolution multibeam echosounder (MBES) data collected in 2013 covering the entire network of tidal channels and inlets of the Venice Lagoon, Italy. The dataset comprises also the backscatter (BS) data, which reflect the acoustic properties of the seafloor, and the tidal current fields simulated by means of a high-resolution three-dimensional unstructured hydrodynamic model. The DTMs and the current fields help define how morphological and benthic properties of tidal channels are affected by the action of currents. These data are of potential broad interest not only to geomorphologists, oceanographers and ecologists studying the morphology, hydrodynamics, sediment transport and benthic habitats of tidal environments, but also to coastal engineers and stakeholders for cost-effective monitoring and sustainable management of this peculiar shallow coastal system. PMID:28872636

High resolution multibeam and hydrodynamic datasets of tidal channels and inlets of the Venice Lagoon.

PubMed

Madricardo, Fantina; Foglini, Federica; Kruss, Aleksandra; Ferrarin, Christian; Pizzeghello, Nicola Marco; Murri, Chiara; Rossi, Monica; Bajo, Marco; Bellafiore, Debora; Campiani, Elisabetta; Fogarin, Stefano; Grande, Valentina; Janowski, Lukasz; Keppel, Erica; Leidi, Elisa; Lorenzetti, Giuliano; Maicu, Francesco; Maselli, Vittorio; Mercorella, Alessandra; Montereale Gavazzi, Giacomo; Minuzzo, Tiziano; Pellegrini, Claudio; Petrizzo, Antonio; Prampolini, Mariacristina; Remia, Alessandro; Rizzetto, Federica; Rovere, Marzia; Sarretta, Alessandro; Sigovini, Marco; Sinapi, Luigi; Umgiesser, Georg; Trincardi, Fabio

2017-09-05

Tidal channels are crucial for the functioning of wetlands, though their morphological properties, which are relevant for seafloor habitats and flow, have been understudied so far. Here, we release a dataset composed of Digital Terrain Models (DTMs) extracted from a total of 2,500 linear kilometres of high-resolution multibeam echosounder (MBES) data collected in 2013 covering the entire network of tidal channels and inlets of the Venice Lagoon, Italy. The dataset comprises also the backscatter (BS) data, which reflect the acoustic properties of the seafloor, and the tidal current fields simulated by means of a high-resolution three-dimensional unstructured hydrodynamic model. The DTMs and the current fields help define how morphological and benthic properties of tidal channels are affected by the action of currents. These data are of potential broad interest not only to geomorphologists, oceanographers and ecologists studying the morphology, hydrodynamics, sediment transport and benthic habitats of tidal environments, but also to coastal engineers and stakeholders for cost-effective monitoring and sustainable management of this peculiar shallow coastal system.

N2 production and fixation in deep-tier burrows of Squilla empusa in muddy sediments of Great Peconic Bay

NASA Astrophysics Data System (ADS)

Waugh, Stuart; Aller, Robert C.

2017-11-01

Global marine N budgets often show deficits due to dominance of benthic N2 production relative to pelagic N2 fixation. Recent studies have argued that benthic N2 fixation in shallow water environments has been underestimated. In particular, N2 fixation associated with animal burrows may be significant as indicated by high rates of N2 fixation reported in muddy sands populated by the ghost shrimp, Neotrypaea californiensis (Bertics et al., 2010). We investigated whether N2 fixation occurs at higher rates in the burrow-walls of the deep-burrowing ( 0.5-4 m) mantis shrimp, Squilla empusa, compared to ambient, estuarine muds and measured seasonal in-situ N2 concentrations in burrow-water relative to bottom-water. Acetylene reduction assays showed lower N2 fixation in burrow-walls than in un-populated sediments, likely due to inhibitory effects of O2 on ethylene production. Dissolved N2 was higher in burrow-water than proximate bottom-water at all seasons, demonstrating a consistent balance of net N2 production relative to fixation in deep-tier biogenic structures.

Geomorphic evidence for ancient seas on Mars

NASA Technical Reports Server (NTRS)

Parker, Timothy J.; Schneeberger, Dale M.; Pieri, David C.; Saunders, R. Stephen

1987-01-01

Geomorphic evidence is presented for ancient seas on Mars. Several features, similar to terrestrial lacustrine and coastal features, were identified along the northern plains periphery from Viking images. The nature of these features argues for formation in a predominantly liquid, shallow body of standing water. Such a shallow sea would require either relatively rapid development of shoreline morphologies or a warmer than present climate at the time of outflow channel formation.

The first marine record of the Bartonian Nummulites and Calcareous nannofossils at the Tihoiyeh section of the Jiroft area (Central Iran)

NASA Astrophysics Data System (ADS)

Hadi, Mehdi; Parandavar, Mohammad; Kiani-Shahvandi, Madineh; Dabaghi Sadr, Fatemeh

2016-04-01

The studied shallow marine sediments are situated south and southwest of Jiroft town, 180 km south of Keman, from the Tihoiyeh section (near Tihoiyeh village). These deposits at the top of the section include marly limestones with index Nummulites species such as N. perforatus (De Montfort), N. lyelli (D'Archiac and Haime). According to Schaub's nummulitic time scale (1981) and shallow benthic zonation of Serra-Kiel et al. (1998), this interval referred to Bartonian age and SBZ17 zone, respectively. Also, the calcareous nannofossil study on this interval led to identification of 19 well-preserved species belonging to 11 genera of this plankton group. Based on determined index calcareous nannofossiltaxa such as Reticulofenestra bisecta, Sphenolithus obtusus, Sphenolithus intercalaris, Cribrocentrum erbae and associated species such as Sphenolithus pseudoradians, Reticulofenestra wadeae, Cribrocentrum reticulatum and Blackites spinosus this interval assigned to the CNE15 zone of Agnini et al. (2014) that corresponds to upper part of NP16 and lower part of NP17 zones of Martini (1971). It is resulted that, the detected shallow benthic foraminifera zone, corresponds to the calcareous nannofossil zones both indicating Bartonian age. Keywords: Bartonian, Calcareous nannofossil, Nummulites, Central Iran, Tihoiyeh section. References: Agnini, C., Fornaciari, E., Raffi, I, Rita Catanzariti, R., Palike, H., Backman, J. and Rio, D., 2014. Biozonation and biochronology of Paleogene calcareous nannofossils from low and middle latitudes. Newsletters on Stratigraphy, Vol. 47 (2), Pp. 131-181. Martini, E., 1971. Standard Tertiary and Quaternary calcareous nannoplankton zonation. In: Farinacci, A. (Ed.), Proceedings 2nd International Conference Planktonic Microfossils Roma: Rome (Ed. Tecnosci.), 2, Pp. 739-785. Serra-Kiel, J., Hottinger, L., Caus, E., Drobne, K., Fernandez, C., Jauhri, A.K., Less, G., Pavlovec, R., Pignatti, J., Samso, J.M., Schaub, H., Sirel, E., Strougo, A., Tambareau, Y., Tosquella, Y. &Zakrevskaya, E., 1998. Larger foraminiferal biostratigraphy of the Tethyan Paleocene and Eocene. Bulletin de la SociétéGéologique de France, 169, Pp. 281-299. Shaub, H., 1981. Nummuliteses Assilines de la Tethys Paleogene. Memoires sussesde Paleontologie, vol. 104- 106, Pp. 354.

Biofilm and Diatom Succession on Polyethylene (PE) and Biodegradable Plastic Bags in Two Marine Habitats: Early Signs of Degradation in the Pelagic and Benthic Zone?

PubMed Central

Laforsch, Christian; Weber, Miriam

2015-01-01

The production of biodegradable plastic is increasing. Given the augmented littering of these products an increasing input into the sea is expected. Previous laboratory experiments have shown that degradation of plastic starts within days to weeks. Little is known about the early composition and activity of biofilms found on biodegradable and conventional plastic debris and its correlation to degradation in the marine environment. In this study we investigated the early formation of biofilms on plastic shopper bags and its consequences for the degradation of plastic. Samples of polyethylene and biodegradable plastic were tested in the Mediterranean Sea for 15 and 33 days. The samples were distributed equally to a shallow benthic (sedimentary seafloor at 6 m water depth) and a pelagic habitat (3 m water depth) to compare the impact of these different environments on fouling and degradation. The amount of biofilm increased on both plastic types and in both habitats. The diatom abundance and diversity differed significantly between the habitats and the plastic types. Diatoms were more abundant on samples from the pelagic zone. We anticipate that specific surface properties of the polymer types induced different biofilm communities on both plastic types. Additionally, different environmental conditions between the benthic and pelagic experimental site such as light intensity and shear forces may have influenced unequal colonisation between these habitats. The oxygen production rate was negative for all samples, indicating that the initial biofilm on marine plastic litter consumes oxygen, regardless of the plastic type or if exposed in the pelagic or the benthic zone. Mechanical tests did not reveal degradation within one month of exposure. However, scanning electron microscopy (SEM) analysis displayed potential signs of degradation on the plastic surface, which differed between both plastic types. This study indicates that the early biofilm formation and composition are affected by the plastic type and habitat. Further, it reveals that already within two weeks biodegradable plastic shows signs of degradation in the benthic and pelagic habitat. PMID:26394047

Storm Driven Upwelling Responsible for pCO2-rich Water Intrusion in the South Atlantic Bight

NASA Astrophysics Data System (ADS)

Noakes, S.; Gledhill, D. K.

2016-02-01

Gray's Reef National Marine Sanctuary (GRNMS) is located approximately 20 miles offshore Georgia along the inner to middle shelf of the South Atlantic Bight (SAB). The University of Georgia (UGA) and the Pacific Marine Environmental Lab have maintained a high resolution pCO2 system for almost a decade on the National Data Buoy Center's buoy moored at GRNMS. To support the surface monitoring and set the stage for benthic monitoring at GRNMS, UGA and GRNMS have established a seafloor observatory that monitors pCO2, pH and water quality parameters. Traditional thought had held that given the relatively shallow water depth at GRNMS, the pCO2 measured on the surface could be extrapolated to the seafloor and utilized to monitor the benthic community. However, seafloor pCO2 data collected to date have revealed unusual episodes of subsurface pCO2-rich water moving through GRNMS that had not been previously identified by surface monitoring. Many of these events correspond with major storms that have either formed off the SAB or passed nearby GRNMS. Based on the surface data collected to date, temperature driven seasonal pCO2 changes occur naturally on an annual scale in the SAB which also affects the pH. However, the storms appear to have induced upwelling of pCO2-rich water from the deep Atlantic Ocean pushing it inward over the long continental shelf towards GRNMS. The result of the upwelling is a sharp increase of subsurface pCO2 lasting only days to weeks as compared to the seasonal cycle. It is part of the natural weather patterns for storms to form off the SAB or pass nearby, but depending on if the storm frequency increases due to global climate change, this process may become more of an impact on the benthic community. How this affects the benthic community has yet to be determined, but it is clear that they have adapted to seasonal fluctuations for survival. These upwellings are obviously adding to the SAB total carbon budget and affecting the benthic water quality, but to what extent have yet to be determined.

Biofilm and Diatom Succession on Polyethylene (PE) and Biodegradable Plastic Bags in Two Marine Habitats: Early Signs of Degradation in the Pelagic and Benthic Zone?

PubMed

Eich, Andreas; Mildenberger, Tobias; Laforsch, Christian; Weber, Miriam

2015-01-01

The production of biodegradable plastic is increasing. Given the augmented littering of these products an increasing input into the sea is expected. Previous laboratory experiments have shown that degradation of plastic starts within days to weeks. Little is known about the early composition and activity of biofilms found on biodegradable and conventional plastic debris and its correlation to degradation in the marine environment. In this study we investigated the early formation of biofilms on plastic shopper bags and its consequences for the degradation of plastic. Samples of polyethylene and biodegradable plastic were tested in the Mediterranean Sea for 15 and 33 days. The samples were distributed equally to a shallow benthic (sedimentary seafloor at 6 m water depth) and a pelagic habitat (3 m water depth) to compare the impact of these different environments on fouling and degradation. The amount of biofilm increased on both plastic types and in both habitats. The diatom abundance and diversity differed significantly between the habitats and the plastic types. Diatoms were more abundant on samples from the pelagic zone. We anticipate that specific surface properties of the polymer types induced different biofilm communities on both plastic types. Additionally, different environmental conditions between the benthic and pelagic experimental site such as light intensity and shear forces may have influenced unequal colonisation between these habitats. The oxygen production rate was negative for all samples, indicating that the initial biofilm on marine plastic litter consumes oxygen, regardless of the plastic type or if exposed in the pelagic or the benthic zone. Mechanical tests did not reveal degradation within one month of exposure. However, scanning electron microscopy (SEM) analysis displayed potential signs of degradation on the plastic surface, which differed between both plastic types. This study indicates that the early biofilm formation and composition are affected by the plastic type and habitat. Further, it reveals that already within two weeks biodegradable plastic shows signs of degradation in the benthic and pelagic habitat.

Growth, physiochemical and antioxidant responses of overwintering benthic cyanobacteria to hydrogen peroxide.

PubMed

Chen, Chao; Yang, Zhen; Kong, Fanxiang; Zhang, Min; Yu, Yang; Shi, Xiaoli

2016-12-01

The recruitment of overwintering benthic cyanobacteria from the sediment surface is important for the development of cyanobacterial blooms during warm spring seasons. Thus, controlling the growth of cyanobacteria at the benthic stage to inhibit their recruitment is vital to control or delay the formation of summer blooms. In this study, overwintering benthic cyanobacteria were exposed to ascending hydrogen peroxide (H 2 O 2 ) concentrations (0, 1, 5, and 20 mg/L) in a simulated overwintering environment. Photosynthetic pigments, physiochemical features, and antioxidant responses were evaluated to determine the inhibitory effects of H 2 O 2 on the growth of benthic cyanobacteria and to identify the potential mechanisms thereof. These H 2 O 2 -treated cyanobacteria were then collected through filtration and transferred to an optimum environment to evaluate their recovery capacity. The results showed that chlorophyll a and phycocyanin contents, photosynthetic yield, and esterase activity decreased significantly in H 2 O 2 treated groups compared to the control. The activities of superoxide dismutase (SOD) and catalase (CAT) in benthic cyanobacteria were inhibited after 72 h exposure to H 2 O 2 , while the malondialdehyde (MDA) contents were stimulated at the same time. These results indicate that H 2 O 2 can inhibit the growth of benthic cyanobacteria, and H 2 O 2 -induced oxidative damage might be one of the mechanisms involved. The recovery experiment showed that the impairment of benthic cyanobacteria was temporary at a low dose of 1 mg/L H 2 O 2 , but permanent damage was induced when H 2 O 2 concentrations were increased to 5 and 20 mg/L. Overall, our results highlight that H 2 O 2 is a potential cyanobacteria inhibitor and can be used to decreasing the biomass of overwintering cyanobacteria, and could further control the intensity of cyanobacteria during the growth seasons. Copyright © 2016. Published by Elsevier Ltd.

The high resolution mapping of the Venice Lagoon tidal network

NASA Astrophysics Data System (ADS)

Madricardo, Fantina; Foglini, Federica; Kruss, Aleksandra; Bellafiore, Debora; Trincardi, Fabio

2017-04-01

One of the biggest challenges of the direct observation of the ocean is to achieve a high resolution mapping of its seafloor morphology and benthic habitats. So far, sonars have mapped just 0.05% of the ocean floor with less than ten-meter resolution. The recent efforts of the scientific community have been devoted towards the mapping of both Deep Ocean and very shallow coastal areas. Coastal and transitional environments in particular undergo strong morphological changes due to natural and anthropogenic pressure. Nowadays, only about 5% of the seafloor of these environments † have been mapped: the shallowness of these environments has prevented the use of underwater acoustics to reveal their morphological features. The recent technological development of multibeam echosounder systems, however, enables these instruments to achieve very high performances also in such shallow environments. In this work, we present results and case studies of an extensive multibeam survey carried out in the Lagoon of Venice in 2013. The Lagoon of Venice is the biggest lagoon in the Mediterranean Sea with a surface of about 550 km2 and with an average depth of about 1 m. In the last century, the morphological and ecological properties of the lagoon changed dramatically: the surface of the salt marshes was reduced by 60% and some parts of the lagoon are deepening with a net sediment flux exiting from the inlets. Moreover, major engineering interventions are currently ongoing at the inlets (MOSE project). These changes at the inlets could affect substantially the lagoon environment. To understand and monitor the future evolution of the Lagoon of Venice, ISMAR within the project RITMARE (a National Research Programme funded by the Italian Ministry of University and Research) carried out an extensive survey, involving a team of more than 25 scientists, to collect high resolution (0.5 m) bathymetry of key study areas such as the tidal inlets and channels. Following a broad multidisciplinary approach, bathymetric and backscatter intensity data are now employed for geomorphologic studies, habitat mapping and modelling of evolution trends of this highly dynamical and complex transitional environment.

Non-native Minnows Threaten Quillwort Populations in High Mountain Shallow Lakes.

PubMed

Gacia, Esperança; Buchaca, Teresa; Bernal-Mendoza, Nayeli; Sabás, Ibor; Ballesteros, Enric; Ventura, Marc

2018-01-01

Submersed aquatic plants are a key component of shallow, clear water lakes contributing to primary production and water quality. High mountain lakes are naturally fishless although invasive trout and most recently minnows have been introduced causing a major impact on fauna richness. The Pyrenean high mountain range has preserved soft-water oligotrophic boreal isoetids in their southern limit of distribution but the recent fish introduction is a potential factor of stress that needs to be addressed. We here work under the hypothesis that due to contrasting ecological features, trout will not be heavily affecting quillwort populations while minnows will have a stronger effect on zooplankton and zoobenthos that will promote algal growth and reduce light availability for the underwater meadows. Ten Pyrenean shallow lakes representative of three scenarios -fishless, with trout and with minnows-, were sampled for meadow structure, water column and benthic environment characterization in mid-summer 2015 and 2016. Quillwort biomass allocation (above vs. belowground), epiphytic load, and composition of the algal community (abundant cyanobacteria) differed in the presence of minnows. In trout lakes biomass allocation and epiphytic load were average and the algal community composed by chlorophytes and diatoms as in fishless lakes. Biomass ratio was close to thresholds of negative buoyancy in minnow lakes indicating that meadows were at risk of uprooting and consequent de-vegetation. Total and soluble carbohydrates were lower and the sporangia contained significantly less reserves to constrain growth and expansion in the presence of minnows. Lake scenarios were coupled to physicochemical differences with low light, high phosphorus and Chl-a (mesotrophia) in minnow lakes, while trout and fishless lakes remained oligotrophic. This is the first study assessing the impact of non-native fish on soft-water isoetids from mountain lakes and shows that minnows are a major threat to quillworts. The impaired light environment (from epiphytic algal overgrow and water column Chl-a) entails consequent regression (i.e., no recruitment) and de-vegetation (uprooting) of the meadows. Since soft-water oligotrophic mountain lakes are protected under the Habitats Directive, some action needs to be urgently implemented not only to preserve quillworts but to the overall ecological integrity of the lakes.

Intraday evaporation and heat fluxes variation at air-water interface of extremely shallow lakes in Chilean Andean Plateau

NASA Astrophysics Data System (ADS)

Vergara, Jaime; de la Fuente, Alberto

2016-04-01

Salars are landscapes formed by evapo-concentration of salts that usually have extremely shallow terminal lagoons (de la Fuente & Niño, 2010). They are located in the altiplanic region of the Andes Mountains of Chile, Argentina, Bolivia and Peru, and they sustain highly vulnerable and isolated ecosystems in the Andean Desert. These ecosystems are sustained by benthic primary production, which is directly linked to mass, heat and momentum transfer between the water column and the atmosphere (de la Fuente, 2014). Despite the importance of these transport processes across the air-water interface, there are few studies describing their intraday variation and how they are influenced by the stability of the atmospheric boundary layer in the altiplano. The main objective of this work is to analyze the intraday vertical transport variation of water vapor, temperature and momentum between the atmosphere and a shallow water body on Salar del Huasco located in northern Chile (20°19'40"S, 68°51'25"W). To achieve this goal, we measured atmospheric and water variables in a campaign realized on late October 2015, using high frequency meteorological instruments (a sonic anemometer with an incorporated infrared gas analyzer, and a standard meteorological station) and water sensors. From these data, we characterize the intraday variation of water vapor, temperature and momentum fluxes, we quantify the influence of the atmospheric boundary layer stability on them, and we estimate transfer coefficients associated to latent heat, sensible heat, hydrodynamic drag and vertical transport of water vapor. As first results, we found that latent and sensible heat fluxes are highly influenced by wind speed rather buoyancy, and we can identify four intraday intervals with different thermo-hydrodynamic features: (1) cooling under stable condition with wind speed near 0 from midnight until sunrise; (2) free convection with nearly no wind speed under unstable condition from sunrise until midday; (3) forced convection with high wind speed (near 15 m/s) and unstable condition close to neutral condition from noon to sunset; and (4) cooling under unstable conditions with significant wind speed, from sunset until midnight.

Middle to Late Eocene paleoenvironmental changes in a marine transgressive sequence from the northern Tethyan margin (Adelholzen, Germany)

PubMed Central

GEBHARDT, Holger; ĆORIĆ, Stjepan; DARGA, Robert; BRIGUGLIO, Antonino; SCHENK, Bettina; WERNER, Winfried; ANDERSEN, Nils; SAMES, Benjamin

2015-01-01

The northern Tethyan margin is a key region for determining environmental changes associated with the collision of continental and oceanic tectonic plates and Alpine orogeny. Herein we investigated Middle to Late Eocene neritic to bathyal sediments deposited during an interval of unstable climatic conditions. In order to quantify paleoenvironmental changes, we developed a detailed age model based on biozonations of planktic foraminifera, calcareous nannoplankton, and larger benthic foraminifera. The section at Adelholzen covers the almost complete Lutetian Stage (calcareous nannoplankton zones NP15a-16, planktic foraminifera zones E8-11, shallow benthic (foraminifera) zones SBZ13-15) and large parts of the Priabonian Stage (NP18-20, E14/15), while the intermediate Bartonian Stage (NP17) is completely missing. Foraminiferal, calcareous nannoplankton, and macrofossil assemblages were analyzed for changes in paleo-water depth, mixing and stratification, paleo-primary productivity (pPP), food supply, and bottom water oxygenation. Paleo-water depth estimates range from 50 m (middle neritic, early Lutetian) to nearly 500 m (upper bathyal, late Priabonian). The combination of assemblage composition, planktic and benthic foraminiferal accumulation rates, and derived parameters (carbon-flux to sea floor, pPP) enabled us to identify a series of distinct paleoceanographic events of at least regional significance. Such events are characterized by considerable changes in primary productivity or reduced bottom water ventilation. Calculated pPP-values indicate oligotrophic conditions throughout. PMID:26346423

Infection Paradox: High Abundance but Low Impact of Freshwater Benthic Viruses

PubMed Central

Filippini, Manuela; Buesing, Nanna; Bettarel, Yvan; Sime-Ngando, Télesphore; Gessner, Mark O.

2006-01-01

The discovery of an abundant and diverse virus community in oceans and lakes has profoundly reshaped ideas about global carbon and nutrient fluxes, food web dynamics, and maintenance of microbial biodiversity. These roles are exerted through massive viral impact on the population dynamics of heterotrophic bacterioplankton and primary producers. We took advantage of a shallow wetland system with contrasting microhabitats in close proximity to demonstrate that in marked contrast to pelagic systems, viral infection, determined directly by transmission electron microscopy, and consequently mortality of prokaryotes were surprisingly low in benthic habitats in all seasons. This was true even though free viruses were abundant throughout the year and bacterial infection and mortality rates were high in surrounding water. The habitats in which we found this pattern include sediment, decomposing plant litter, and biofilms on aquatic vegetation. Overall, we detected viruses in only 4 of a total of ∼15,000 bacterial cells inspected in these three habitats; for comparison, nearly 300 of ∼5,000 cells suspended in the water column were infected. The strikingly low incidence of impact of phages in the benthos may have important implications, since a major portion of microbial biodiversity and global carbon and nutrient turnover are associated with surfaces. Therefore, if failure to infect benthic bacteria is a widespread phenomenon, then the global role of viruses in controlling microbial diversity, food web dynamics, and biogeochemical cycles would be greatly diminished compared to predictions based on data from planktonic environments. PMID:16820485

Oxygen and evolutionary patterns in the sea: onshore/offshore trends and recent recruitment of deep-sea faunas

NASA Technical Reports Server (NTRS)

Jacobs, D. K.; Lindberg, D. R.

1998-01-01

Over the last 15 years a striking pattern of diversification has been documented in the fossil record of benthic marine invertebrates. Higher taxa (orders) tend to originate onshore, diversify offshore, and retreat into deep-water environments. Previous studies attribute this macroevolutionary pattern to a variety of causes, foremost among them the role of nearshore disturbance in providing opportunities for the evolution of novel forms accorded ordinal rank. Our analysis of the post-Paleozoic record of ordinal first appearances indicates that the onshore preference of ordinal origination occurred only in the Mesozoic prior to the Turonian stage of the Cretaceous, a period characterized by relatively frequent anoxic/dysoxic bottom conditions in deeper marine environments. Later, in the Cretaceous and Cenozoic, ordinal origination of benthic organisms did not occur exclusively, or even preferentially, in onshore environments. This change in environmental pattern of ordinal origination roughly correlates with Late Cretaceous: (i) decline in anoxia/dysoxia in offshore benthic environments; (ii) extinction of faunas associated with dysoxic conditions; (iii) increase in bioturbation with the expansion of deep burrowing forms into offshore environments; and (iv) offshore expansion of bryozoan diversity. We also advance a separate argument that the Cenomanian/Turonian and latest Paleocene global events eliminated much of the deep-water benthos. This requires a more recent origin of modern vent and deep-sea faunas, from shallower water refugia, than the Paleozoic or early Mesozoic origin of these faunas suggested by other workers.

Atoll-scale patterns in coral reef community structure: Human signatures on Ulithi Atoll, Micronesia.

PubMed

Crane, Nicole L; Nelson, Peter; Abelson, Avigdor; Precoda, Kristin; Rulmal, John; Bernardi, Giacomo; Paddack, Michelle

2017-01-01

The dynamic relationship between reefs and the people who utilize them at a subsistence level is poorly understood. This paper characterizes atoll-scale patterns in shallow coral reef habitat and fish community structure, and correlates these with environmental characteristics and anthropogenic factors, critical to conservation efforts for the reefs and the people who depend on them. Hierarchical clustering analyses by site for benthic composition and fish community resulted in the same 3 major clusters: cluster 1-oceanic (close proximity to deep water) and uninhabited (low human impact); cluster 2-oceanic and inhabited (high human impact); and cluster 3-lagoonal (facing the inside of the lagoon) and inhabited (highest human impact). Distance from village, reef exposure to deep water and human population size had the greatest effect in predicting the fish and benthic community structure. Our study demonstrates a strong association between benthic and fish community structure and human use across the Ulithi Atoll (Yap State, Federated States of Micronesia) and confirms a pattern observed by local people that an 'opportunistic' scleractinian coral (Montipora sp.) is associated with more highly impacted reefs. Our findings suggest that small human populations (subsistence fishing) can nevertheless have considerable ecological impacts on reefs due, in part, to changes in fishing practices rather than overfishing per se, as well as larger global trends. Findings from this work can assist in building local capacity to manage reef resources across an atoll-wide scale, and illustrates the importance of anthropogenic impact even in small communities.

Late Paleocene-middle Eocene benthic foraminifera on a Pacific seamount (Allison Guyot, ODP Site 865): Greenhouse climate and superimposed hyperthermal events

NASA Astrophysics Data System (ADS)

Arreguín-Rodríguez, Gabriela J.; Alegret, Laia; Thomas, Ellen

2016-03-01

We investigated the response of late Paleocene-middle Eocene (~60-37.5 Ma) benthic foraminiferal assemblages to long-term climate change and hyperthermal events including the Paleocene-Eocene Thermal Maximum (PETM) at Ocean Drilling Program (ODP) Site 865 on Allison Guyot, a seamount in the Mid-Pacific Mountains. Seamounts are isolated deep-sea environments where enhanced current systems interrupt bentho-pelagic coupling, and fossil assemblages from such settings have been little evaluated. Assemblages at Site 865 are diverse and dominated by cylindrical calcareous taxa with complex apertures, an extinct group which probably lived infaunally. Dominance of an infaunal morphogroup is unexpected in a highly oligotrophic setting, but these forms may have been shallow infaunal suspension feeders, which were ecologically successful on the current-swept seamount. The magnitude of the PETM extinction at Site 865 was similar to other sites globally, but lower diversity postextinction faunas at this location were affected by ocean acidification as well as changes in current regime, which might have led to increased nutrient supply through trophic focusing. A minor hyperthermal saw less severe effects of changes in current regime, with no evidence for carbonate dissolution. Although the relative abundance of infaunal benthic foraminifera has been used as a proxy for surface productivity through bentho-pelagic coupling, we argue that this proxy can be used only in the absence of changes in carbonate saturation and current-driven biophysical linking.

Water quality dynamics in an urbanizing subtropical estuary(Oso Bay, Texas).

PubMed

Wetz, Michael S; Hayes, Kenneth C; Fisher, Kelsey V B; Price, Lynn; Sterba-Boatwright, Blair

2016-03-15

Results are presented from a study of water quality dynamics in a shallow subtropical estuary, Oso Bay, Texas, which has a watershed that has undergone extensive urbanization in recent decades. High inorganic nutrient, dissolved organic matter and chlorophyll concentrations, as well as low pH (<8), were observed in a region of Oso Bay that receives wastewater effluent. Despite being shallow (<1 m) and subjected to strong winds on a regular basis, this region also exhibited episodic hypoxia/anoxia. The low oxygen and pH conditions are likely to impose significant stress on benthic organisms and nekton in the affected area. Signatures of eutrophied water were occasionally observed at the mouth of Oso Bay, suggesting that it may be exported to adjacent Corpus Christi Bay and contribute to seasonal hypoxia development in that system as well. These results argue for wastewater nutrient input reductions in order to alleviate the symptoms of eutrophication. Copyright © 2016 Elsevier Ltd. All rights reserved.

Aquatic Invertebrate Assemblages in Shallow Prairie Lakes: Fish and Environmental Influences

USGS Publications Warehouse

Paukert, C.P.; Willis, D.W.

2003-01-01

We sampled zooplankton and benthic macroinvertebrate assemblages in 30 shallow natural lakes to determine the effects of the environment (i.e., habitat and fish abundance) on invertebrates. Zooplankters were identified to genus, and up to 120 individuals per genus were measured. Macroinvertebrates were identified to order, class, or family. Fish communities were also sampled. Relative abundances of zooplankton and macroinvertebrates were low at increased chlorophyll a concentrations, although mean zooplankton length increased with total phosphorus, possibly because of an increased proportion of microzooplankton (rotifers and copepod nauplii) at higher phosphorus levels. Canonical correspondence analysis revealed that zooplankton and macroinvertebrate abundance was influenced by submersed vegetation coverage, whereas zooplankton abundance and size structure were also related to productivity (i.e., chlorophyll a and total phosphorus). However, relative abundance of fish species or fish feeding guilds was not strongly correlated with zooplankton or macroinvertebrate abundance or zooplankton size structure. Physical habitat (e.g., vegetation coverage) may exert substantial influences on invertebrate assemblages in these lakes, possibly providing a refuge from fish predation.

Determination of in situ biomass and energetics in seagrass beds on the west coast of Florida. Topical report, May 1982-January 1984

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dawes, C.J.

1984-01-01

The Gulf Coastal region of Florida supports extensive grass beds that almost continuously cover the shallow (1-5m) depths from Apalachicola Bay to Anclote Bay and in Tampa Bay. Attached and drift benthic seaweeds occur as well and may have higher energetic yields than the seagrasses. The shallow and continuous beds offer a possible source for plant biomass use in methane production, if sufficient material is available throughout the year and the energetics are high enough. Triweekly samplings at three sites around Tampa Bay and bimonthly samplings at four sites along the west coast of Florida showed highest biomass occurring duringmore » the spring through fall months. The available biomass of combined attached and drift seagrasses and seaweeds was lower than that predicted when compared with terrestrial crops. Naturally occurring seagrass and seaweed beds do not have sufficient biomass to justify harvesting for biogass production, although energetics levels are high.« less

Evidence for Late Pleistocene uplift at the Somma-Vesuvius apron near Pompeii

NASA Astrophysics Data System (ADS)

Marturano, Aldo; Aiello, Giuseppe; Barra, Diana

2011-05-01

Detailed stratigraphic and micropalaeontological analyses of samples from boreholes at the Somma-Vesuvius apron, between Pompeii and the sea, allowed reconstruction of Late Quaternary palaeoenvironmental evolution of the Sarno coastal plain. In all, 116 samples were recovered from seven boreholes drilled from 2-10 m a.s.l. to 16.5-26 m b.s.l. Microfossil assemblages, with special regard to benthic foraminifers and ostracods, were used to reconstruct the depositional palaeoenvironment. Fossil remains show that all the pre-79 AD fossiliferous sediments from 2 to - 24 m a.s.l. were deposited in shallow marine waters for a long time despite an appreciable sea level rise. The data indicate alternation of both shallow marine and subaerial conditions during the last ~ 15 kyr, evidencing ground uplift of the area of about 75 m at a rate of ~ 5 mm/year. Marine sediment accumulation (~ 6 m/kyr) and tectonic uplift long offset the sea level rise, and as a consequence, submerged areas remained the same as well.

Ningaloo Reef: Shallow Marine Habitats Mapped Using a Hyperspectral Sensor

PubMed Central

Kobryn, Halina T.; Wouters, Kristin; Beckley, Lynnath E.; Heege, Thomas

2013-01-01

Research, monitoring and management of large marine protected areas require detailed and up-to-date habitat maps. Ningaloo Marine Park (including the Muiron Islands) in north-western Australia (stretching across three degrees of latitude) was mapped to 20 m depth using HyMap airborne hyperspectral imagery (125 bands) at 3.5 m resolution across the 762 km2 of reef environment between the shoreline and reef slope. The imagery was corrected for atmospheric, air-water interface and water column influences to retrieve bottom reflectance and bathymetry using the physics-based Modular Inversion and Processing System. Using field-validated, image-derived spectra from a representative range of cover types, the classification combined a semi-automated, pixel-based approach with fuzzy logic and derivative techniques. Five thematic classification levels for benthic cover (with probability maps) were generated with varying degrees of detail, ranging from a basic one with three classes (biotic, abiotic and mixed) to the most detailed with 46 classes. The latter consisted of all abiotic and biotic seabed components and hard coral growth forms in dominant or mixed states. The overall accuracy of mapping for the most detailed maps was 70% for the highest classification level. Macro-algal communities formed most of the benthic cover, while hard and soft corals represented only about 7% of the mapped area (58.6 km2). Dense tabulate coral was the largest coral mosaic type (37% of all corals) and the rest of the corals were a mix of tabulate, digitate, massive and soft corals. Our results show that for this shallow, fringing reef environment situated in the arid tropics, hyperspectral remote sensing techniques can offer an efficient and cost-effective approach to mapping and monitoring reef habitats over large, remote and inaccessible areas. PMID:23922921

The Interaction of Large Amplitude Internal Seiches with a Shallow Sloping Lakebed: Observations of Benthic Turbulence in Lake Simcoe, Ontario, Canada

PubMed Central

Cossu, Remo; Wells, Mathew G.

2013-01-01

Observations of the interactions of large amplitude internal seiches with the sloping boundary of Lake Simcoe, Canada show a pronounced asymmetry between up- and downwelling. Data were obtained during a 42-day period in late summer with an ADCP and an array of four thermistor chains located in a 5 km line at the depths where the thermocline intersects the shallow slope of the lakebed. The thermocline is located at depths of 12–14 m during the strongly stratified period of late summer. During periods of strong westerly winds the thermocline is deflected as much as 8 m vertically and interacts directly with the lakebed at depth between 14–18 m. When the thermocline was rising at the boundary, the stratification resembles a turbulent bore that propagates up the sloping lakebed with a speed of 0.05–0.15 m s−1 and a Froude number close to unity. There were strong temperature overturns associated with the abrupt changes in temperature across the bore. Based on the size of overturns in the near bed stratification, we show that the inferred turbulent diffusivity varies by up to two orders of magnitude between up- and downwellings. When the thermocline was rising, estimates of turbulent diffusivity were high with KZ ∼10−4 m2s−1, whereas during downwelling events the near-bed stratification was greatly increased and the turbulence was reduced. This asymmetry is consistent with previous field observations and underlines the importance of shear-induced convection in benthic bottom boundary layers of stratified lakes. PMID:23472085

Influences of wind-wave exposure on the distribution and density of recruit reef fishes at Kure and Pearl and Hermes Atolls, Northwestern Hawaiian Islands

USGS Publications Warehouse

DeMartini, E.E.; Zgliczynski, B.J.; Boland, R.C.; Friedlander, A.M.

2009-01-01

This paper describes the results of a field survey designed to test the prediction that the density of benthic juveniles of shallow-reef fishes is greater on wind-wave "exposed" sectors of a pair of isolated oceanic atolls (Kure, Pearl and Hermes) at the far northwestern end of the Hawaiian Islands, an archipelago in which east-northeasterly trade winds dominate onshore water flow and transport by surface currents. The densities of recruits (juveniles ???5 cm total length) were higher overall on windward versus leeward sectors of carbonate rock-rubble back reefs at both atolls, and the pattern was stronger for smaller (likely younger, more recently settled) recruits of four of the five most abundant species and the remainder pooled as an "Other" taxon. The windward-leeward disparity was four-fold greater at Pearl Hermes (the atoll with a three-fold longer perimeter) than at Kure. Resident predator biomass also was correlated with recruit densities, but habitat (benthic substratum) effects were generally weak. The distribution and abundance of recruits and juveniles of the primarily endemic reef fishes on shallow back reefs at these atolls appear partly influenced by relative rates of water flow over windward vs. leeward sectors of barrier reef and by the size, shape, and orientation of habitat parcels that filter out postlarval fishes with relatively weak swimming capabilities like labroids. Whole-reef geomorphology as well as fine-scale habitat heterogeneity and rugosity should be considered among the suite of many factors used to interpret observed spatial patterns of post-settlement juvenile fish distribution at atolls and perhaps some other tropical reefs. ?? The Author(s) 2009.

The Campanian-Maastrichtian foraminiferal biostratigraphy of the basement sediments from the southern Pannonian Basin (Vojvodina, northern Serbia): implications for the continuation of the Eastern Vardar and Sava zones

NASA Astrophysics Data System (ADS)

Dunčić, Milena; Dulić, Ivan; Popov, Olivera; Bogićević, Goran; Vranjković, Alan

2017-04-01

Micropalaeontological and biostratigraphical studies included Campanian-Maastrichtian complexes from five oil exploration wells drilled in northern Serbia (Vojvodina): the first is a carbonate-clastic complex and second is a complex containing ophiolites intercalated with hemipelagic and pelagic sediments. Within the studied complexes, rich associations of planktonic and benthic foraminifera, calcareous nannoplankton, palynomorphs, as well as shallow and deep-water fossil detritus were determined. The presence of relatively rich associations of planktonic foraminifera allowed recognition of two biozones: the Globotruncana ventricosa Zone, observed in the sediments of the carbonate-clastic complex and the Gansserina gansseri Zone, observed in both complexes. Except biozones, based on documented index species, for some units in both complexes, larger benthic foraminifera species had special biostratigraphical value, and in some of them, the calcareous nannoplankton zones were recognized. The studied complexes represent deep-water formations, generated in oceanic island arc and trough zones. The presence of limestones, which originate from destroyed rudist reefs, is explained by transfer by means of gravitational transport mechanisms of shallow-water sediments to deep-water depositional environments. In this paper, the results of more detailed biostratigraphical and palaeo-ecological studies of foraminifera associations in Campanian-Maastrichtian complexes in Vojvodina are presented. Combined with lithological studies, seven units were determined within the complexes. The obtained results are important as a part of multidisciplinary, regional exploration of both complexes, generated in specific geological conditions, that today constitute a part of the pre-Neogene basement complex in the southeastern part of the Pannonian Basin. The Campanian- Maastrichtian carbonate-clastic complex represents sedimentary cover of the Eastern Vardar Ophiolitic Unit, while the ophiolites intercalated with hemipelagic and pelagic limestones belongs to the Sava Zone.

Oligo-Miocene foraminiferal record (Miogypsinidae, Lepidocyclinidae and Nummulitidae) from the Western Taurides (SW Turkey): Biometry and implications for the regional geology

NASA Astrophysics Data System (ADS)

Özcan, Ercan; Less, György; Báldi-Beke, Mária; Kollányi, Katalin; Acar, Ferhat

2009-05-01

The marine Oligo-Miocene units of western Taurides, deposited under different tectonic regimes (in Bey Dağları platform in foreland and coeval sequences in hinterland), were studied to establish a high-resolution biostratigraphic framework. Biometric study of the full spectrum of larger foraminifera in a regional scale allowed us correlating them with the shallow benthic zonation (SBZ) system introduced by [Cahuzac, B., Poignant, A., 1997. Essai de biozonation de l'Oligo-Miocène dans les bassins européens à l'aide des grands foraminifères néritiques. Bulletin de la Société géologique de France 168, 155-169], and to determine the ages of these sites on zonal precision for the first time. In correlating these assemblages to standard shallow benthic zones, planktonic data were also used whenever possible. Taxa, classified under the genera Nummulites, Miogypsina, Miolepidocyclina, Nephrolepidina, Eulepidina, Heterostegina, Operculina and Cycloclypeus (?) and their assemblages, closely resemble to the fauna described from European basins. These groups characterize the SBZ 22B to 25 zones referring to a time interval from early Chattian to Burdigalian. However, a main gap in late Chattian (SBZ 23) and in early part of the Aquitanian (SBZ 24) is also recorded in the platform succession. In the meantime, rare Eulepidina in the Burdigalian levels suggest a clear Indo-Pacific influence. Based on the discovery of early Chattian (SBZ 22B) deposits (previously mapped under Eocene/Miocene units), the Oligo-Miocene stratigraphy of the Bey Dağları platform is also revised. A more precise chronology for regional Miocene transgression is presented based on the miogypsinid evolutionary scale.

New model of succession of Middle and Late Pennsylvanian fossil communities in north Texas, Mid-Continent, and Appalachians with implications on black shale controversy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boardman, D.R. II; Yancey, T.E.; Mapes, R.H.

1983-03-01

A new model for the succession of Pennsylvanian fossil communities, preserved in cyclothems, is proposed on the basis of more than 200 fossil localities in the Mid-Continent, Appalachians, and north Texas. Early models for Mid-Continent cyclothems placed the black shales in shallow water, with maximum transgression at the fusulinid-bearing zone in the overlying limestone. The most recent model proposed that the black phosphatic shales, which commonly occur between two subtidal carbonates, are widespread and laterally continuous over great distances and represent maximum transgression. The black phosphatic shales contain: ammonoids; inarticulate brachiopods; radiolarians; conularids; shark material and abundant and diverse conodonts.more » The black shales grade vertically and laterally into dark gray-black shales which contain many of the same pelagic and epipelagic forms found in the phosphatic black shales. This facies contains the deepest water benthic community. Most of these forms are immature, pyritized, and generally are preserved as molds. The dark gray-black facies grades into a medium gray shale facies which contains a mature molluscan fauna. The medium gray shale grades into a lighter gray facies, which is dominated by brachiopods, crinoids, and corals, with occasional bivalves and gastropods. (These facies are interpreted as being a moderate to shallow depth shelf community). The brachiopid-crinoid community is succeeded by shallow water communities which may have occupied shoreline, lagoonal, bay, interdeltaic, or shallow prodeltaic environments.« less

Mapping shallow waters habitats using OBIA by applying several approaches of depth invariant index in North Kepulauan Seribu

NASA Astrophysics Data System (ADS)

Siregar, V. P.; Agus, S. B.; Subarno, T.; Prabowo, N. W.

2018-05-01

The availability of satellite imagery with a variety of spatial resolution, both free access and commercial become as an option in utilizing the remote sensing technology. Variability of the water column is one of the factors affecting the interpretation results when mapping marine shallow waters. This study aimed to evaluate the influence of water column correction (depth-invariant index) on the accuracy of shallow water habitat classification results using OBIA. This study was conducted in North of Kepulauan Seribu, precisely in Harapan Island and its surrounding areas. Habitat class schemes were based on field observations, which were then used to build habitat classes on satellite imagery. The water column correction was applied to the three pairs of SPOT-7 multispectral bands, which were subsequently used in object-based classification. Satellite image classification was performed with four different approaches, namely (i) using DII transformed bands with single pair band input (B1B2), (ii) multi pairs bands (B1B2, B1B3, and B2B3), (iii) combination of multi pairs band and initial bands, and (iv) only using initial bands. The accuracy test results of the four inputs show the values of Overall Accuracy and Kappa Statistics, respectively 55.84 and 0.48; 68.53 and 0.64; 78.68 and 0.76; 77.66 and 0.74. It shows that the best results when using DII and initial band combination for shallow water benthic classification in this study site.

Demersal Fish Assemblages on Seamounts and Other Rugged Features in Deep Waters of the Greater and Lesser Antilles

NASA Astrophysics Data System (ADS)

Chaytor, J. D.; Quattrini, A.; Demopoulos, A. W.

2015-12-01

Caribbean fish communities in shallow waters have been well studied along the Greater and Lesser Antilles for decades; however, the deep (>200 m) assemblages remain poorly known due to the technical challenges associated with focused surveys at these greater depths. The numerous geological features (e.g., seamounts, island ridges, banks) that punctuate the insular margins increase habitat heterogeneity, which may lead to enhanced diversity of the deep demersal fish community in the region. Recent (2013-2014) expeditions in the area using the E/V Nautilus and the ROV Hercules surveyed fish communities during 17 dives across different seafloor features at depths ranging from 64 to 2944 m. These surveys enabled us to investigate whether demersal fish assemblages differed among these seafloor features and/or in response to other environmental factors. Preliminary analyses suggested that assemblage differences are influenced by depth, dissolved oxygen, and differences in benthic microhabitat (i.e., soft substrate, rock outcrop, slope angle). Notably, both abundance and diversity of fishes was low at depths >700 m on seamounts in the Anegada Passage. This pattern is likely due to limited food supply in the region. ROV surveys further elucidated the biogeography of numerous species, as several range and depth extensions were documented. For instance, the morid Lepidion sp., previously known only from the eastern Atlantic and the western North Atlantic, was documented on Norrôit Seamount. A new species, Polylepion sp. A, known only from Curacao, was documented on Conrad Seamount. Also, many common, mesophotic reef species were observed deeper than previously known, including the butterflyfishes Chaetodon sedentarius and Prognathodes aculeatus. This study further supports the importance of environmental conditions influencing local-scale distribution of deep-sea fishes, while demonstrating how little is still known about the biogeography of numerous deep-sea and mesophotic fish species.

Bathymetric Lidar Mapping of Seagrass Distribution within Redfish Bay State Scientific Area, Texas

NASA Astrophysics Data System (ADS)

Starek, M. J.; Fernandez-Diaz, J. C.; Singhania, A.; Shrestha, R. L.; Gibeaut, J. C.; Su, L.; Reisinger, A. S.; Lord, A.

2013-05-01

Monitoring seagrass habitat, species growth, and population decline is an important environmental initiative for coastal ecosystem sustainability. However, measuring details about seagrass distribution and canopy structure over large areas via remote sensing has proved challenging. Developments in airborne bathymetric light detection and ranging (lidar) provide great potential in this regard. Traditional bathymetric lidar systems have been limited in their ability to map within the shallow water zone (< 1 m) where seagrass is typically present due to limitations in receiver response and laser pulse length. Emergent short-pulse width bathymetric lidar sensors and waveform processing algorithms enable depth measurements in shallow water environments not previously accessible. This 3D information of the benthic layer can be applied to extract metrics about the seagrass canopy. On September 10, 2012, researchers with the National Center for Airborne Laser Mapping (NCALM) at the University of Houston (UH) and the Coastal and Marine Geospatial Sciences Lab (CMGL) of the Harte Research Institute at Texas A&M University-Corpus Christi conducted a coordinated airborne and ground-based survey of the Redfish Bay State Scientific Area as part of a collaborative study to investigate the capabilities of bathymetric lidar and hyperspectral imaging for seagrass mapping (standalone and in-fusion). Redfish Bay, located along the middle Texas coast of the Gulf of Mexico, is a state scientific area designated for the purposes of protecting and studying the native seagrasses. For this survey, UH acquired high resolution (2.5 shots/m^2) very-shallow water bathymetry data using their new lidar system , the Optech Aquarius Green (532 nm) system. In a separate flight, UH collected 2 sets of hyperspectral imaging data (1.2-m pixel resolution and 72 bands, and 0.6m pixel resolution and 36 bands) with their CASI 1500 hy sensor. For this survey the sensors were mounted on a PA-31 Chieftain aircraft. The ground survey was conducted by CMGL. The team used an airboat to collect in-situ radiometer measurements of sky irradiance and surface water reflectance at different locations in the bay. The team also collected water samples, GPS position, and depth. A follow-up survey was conducted to acquire ground-truth data of benthic type at over 80 locations within the bay. In this work, we will present initial results on the seagrass mapping project. Focus will be on the bathymetric lidar data collection component. Details on the resultant data characteristics, accuracy, and its applicability for extracting metrics on seagrass canopy distribution and structure within the shallow bay will be presented.

Organic-walled microfossils in 3.2-billion-year-old shallow-marine siliciclastic deposits.

PubMed

Javaux, Emmanuelle J; Marshall, Craig P; Bekker, Andrey

2010-02-18

Although the notion of an early origin and diversification of life on Earth during the Archaean eon has received increasing support in geochemical, sedimentological and palaeontological evidence, ambiguities and controversies persist regarding the biogenicity and syngeneity of the record older than Late Archaean. Non-biological processes are known to produce morphologies similar to some microfossils, and hydrothermal fluids have the potential to produce abiotic organic compounds with depleted carbon isotope values, making it difficult to establish unambiguous traces of life. Here we report the discovery of a population of large (up to about 300 mum in diameter) carbonaceous spheroidal microstructures in Mesoarchaean shales and siltstones of the Moodies Group, South Africa, the Earth's oldest siliciclastic alluvial to tidal-estuarine deposits. These microstructures are interpreted as organic-walled microfossils on the basis of petrographic and geochemical evidence for their endogenicity and syngeneity, their carbonaceous composition, cellular morphology and ultrastructure, occurrence in populations, taphonomic features of soft wall deformation, and the geological context plausible for life, as well as a lack of abiotic explanation falsifying a biological origin. These are the oldest and largest Archaean organic-walled spheroidal microfossils reported so far. Our observations suggest that relatively large microorganisms cohabited with earlier reported benthic microbial mats in the photic zone of marginal marine siliciclastic environments 3.2 billion years ago.

Paleo-environmental interpretation of Paleocene Sepultura Formation in type locality, Mesa La sepultura, Baja California, Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arzate-Hernandez, L.; Tellezduarte, M.

1988-03-01

The Sepultura Formation in its type locality consists of two major lithostratigraphic units. The basal A unit overlies the Cretaceous Rosario Formation. It consists predominantly of fine-grained, poorly consolidated sandstones; some conglomerates; and thin beds of well-consolidated lenticular fossiliferous sandstones, which show some cyclic sedimentation. The poorly consolidated sandstones contain glauconitic layers; abundant shark teeth, benthic forams, and ostracods; and sparse mollusks, brachiopods, and Ophiomorpha-like trace fossils. These faunas indicate deposition in nearshore shallow waters. The interbedded consolidated lenticular sandstones probably indicate storm-induced deposition below wave base. This mechanism is assumed to be responsible for the high concentration of fossilsmore » consisting predominantly of unworn molluscan shells, scaphopods, echinoid spines, corals, and forams. In places, the elongated shells of Turritella pachecoensis show a preferential orientation to the southwest. At the top of the unit, a poorly fossiliferous red conglomerate indicates deltaic conditions. Overlying the conglomerate is unit B which shows a change in the sedimentary environment. It consists of a calcareous shallowing upward sequence of nodular to massive algal limestone with caliche at top. The microfossils of this unit show glauconitization in places, and consist, in addition to algal fragments, of forams, microscopic mollusks, and some ostracods and calcispherules from shallow waters (less than 30 m deep).« less

Relationships between fish, sea urchins and macroalgae: The structure of shallow rocky sublittoral communities in the Cyclades, Eastern Mediterranean

NASA Astrophysics Data System (ADS)

Giakoumi, Sylvaine; Cebrian, Emma; Kokkoris, Giorgos D.; Ballesteros, Enric; Sala, Enric

2012-08-01

Historical overfishing is the most likely explanation for the depletion of the shallow sublittoral communities in many areas not least in the Cyclades Archipelago, Greece. The present study is the first quantitative study of the shallow rocky sublittoral of the Cyclades based on in situ underwater surveys of algal cover, and fish and sea urchin abundance at 181 sampling sites in 25 islands to provide a baseline and investigate the relationship between these communities. Algal turf was the most abundant algal functional group, and canopy algae of the genus Cystoseira were more abundant at the northern islands. A range in fish biomass of almost two orders of magnitude was found across islands, but overall the Cyclades displayed much lower values than fished areas of the Western Mediterranean. We observed apex predators only in 25% of our sampling sites, and their biomass was uncorrelated to total fish biomass, indicating a depleted ecosystem. Sea urchin biomass was also low but similar to values found in other Mediterranean islands and was positively correlated with barrens. We observed a gradient of benthic community complexity from sea urchin barrens to communities dominated by Cystoseira spp. There was no correlation between sea urchins and their predators Diplodus spp., which presented extremely low densities.

Persistent differences between coastal and offshore kelp forest communities in a warming Gulf of Maine

PubMed Central

Lamb, Robert W.

2018-01-01

Kelp forests provide important ecosystem services, yet coastal kelp communities are increasingly altered by anthropogenic impacts. Kelp forests in remote, offshore locations may provide an informative contrast due to reduced impacts from local stressors. We tested the hypothesis that shallow kelp assemblages (12–15 m depth) and associated fish and benthic communities in the coastal southwest Gulf of Maine (GOM) differed significantly from sites on Cashes Ledge, 145 km offshore by sampling five coastal and three offshore sites at 43.0 +/- 0.07° N latitude. Offshore sites on Cashes Ledge supported the greatest density (47.8 plants m2) and standing crop biomass (5.5 kg m2 fresh weight) of the foundation species Saccharina latissima kelp at this depth in the Western North Atlantic. Offshore densities of S. latissima were over 150 times greater than at coastal sites, with similar but lower magnitude trends for congeneric S. digitata. Despite these differences, S. latissima underwent a significant 36.2% decrease between 1987 and 2015 on Cashes Ledge, concurrent with a rapid warming of the GOM and invasion by the kelp-encrusting bryozoan Membranipora membranacea. In contrast to kelp, the invasive red alga Dasysiphonia japonica was significantly more abundant at coastal sites, suggesting light or dispersal limitation offshore. Spatial differences in fish abundance mirrored those of kelp, as the average biomass of all fish on Cashes Ledge was 305 times greater than at the coastal sites. Remote video censuses of cod (Gadus morhua), cunner (Tautaogolabrus adspersus), and pollock (Pollachius virens) corroborated these findings. Understory benthic communities also differed between regions, with greater abundance of sessile invertebrates offshore. Populations of kelp-consuming sea urchins Stronglyocentrotus droebachiensis, were virtually absent from Cashes Ledge while small urchins were abundant onshore, suggesting recruitment limitation offshore. Despite widespread warming of the GOM since 1987, extraordinary spatial differences in the abundance of primary producers (kelp), consumers (cod) and benthic communities between coastal and offshore sites have persisted. The shallow kelp forest communities offshore on Cashes Ledge represent an oasis of unusually high kelp and fish abundance in the region, and as such, comprise a persistent abundance hotspot that is functionally significant for sustained biological productivity of offshore regions of the Gulf of Maine. PMID:29298307

Persistent differences between coastal and offshore kelp forest communities in a warming Gulf of Maine.

PubMed

Witman, Jon D; Lamb, Robert W

2018-01-01

Kelp forests provide important ecosystem services, yet coastal kelp communities are increasingly altered by anthropogenic impacts. Kelp forests in remote, offshore locations may provide an informative contrast due to reduced impacts from local stressors. We tested the hypothesis that shallow kelp assemblages (12-15 m depth) and associated fish and benthic communities in the coastal southwest Gulf of Maine (GOM) differed significantly from sites on Cashes Ledge, 145 km offshore by sampling five coastal and three offshore sites at 43.0 +/- 0.07° N latitude. Offshore sites on Cashes Ledge supported the greatest density (47.8 plants m2) and standing crop biomass (5.5 kg m2 fresh weight) of the foundation species Saccharina latissima kelp at this depth in the Western North Atlantic. Offshore densities of S. latissima were over 150 times greater than at coastal sites, with similar but lower magnitude trends for congeneric S. digitata. Despite these differences, S. latissima underwent a significant 36.2% decrease between 1987 and 2015 on Cashes Ledge, concurrent with a rapid warming of the GOM and invasion by the kelp-encrusting bryozoan Membranipora membranacea. In contrast to kelp, the invasive red alga Dasysiphonia japonica was significantly more abundant at coastal sites, suggesting light or dispersal limitation offshore. Spatial differences in fish abundance mirrored those of kelp, as the average biomass of all fish on Cashes Ledge was 305 times greater than at the coastal sites. Remote video censuses of cod (Gadus morhua), cunner (Tautaogolabrus adspersus), and pollock (Pollachius virens) corroborated these findings. Understory benthic communities also differed between regions, with greater abundance of sessile invertebrates offshore. Populations of kelp-consuming sea urchins Stronglyocentrotus droebachiensis, were virtually absent from Cashes Ledge while small urchins were abundant onshore, suggesting recruitment limitation offshore. Despite widespread warming of the GOM since 1987, extraordinary spatial differences in the abundance of primary producers (kelp), consumers (cod) and benthic communities between coastal and offshore sites have persisted. The shallow kelp forest communities offshore on Cashes Ledge represent an oasis of unusually high kelp and fish abundance in the region, and as such, comprise a persistent abundance hotspot that is functionally significant for sustained biological productivity of offshore regions of the Gulf of Maine.

The Impact of Global Warming and Anoxia on Marine Benthic Community Dynamics: an Example from the Toarcian (Early Jurassic)

PubMed Central

Danise, Silvia; Twitchett, Richard J.; Little, Crispin T. S.; Clémence, Marie-Emilie

2013-01-01

The Pliensbachian-Toarcian (Early Jurassic) fossil record is an archive of natural data of benthic community response to global warming and marine long-term hypoxia and anoxia. In the early Toarcian mean temperatures increased by the same order of magnitude as that predicted for the near future; laminated, organic-rich, black shales were deposited in many shallow water epicontinental basins; and a biotic crisis occurred in the marine realm, with the extinction of approximately 5% of families and 26% of genera. High-resolution quantitative abundance data of benthic invertebrates were collected from the Cleveland Basin (North Yorkshire, UK), and analysed with multivariate statistical methods to detect how the fauna responded to environmental changes during the early Toarcian. Twelve biofacies were identified. Their changes through time closely resemble the pattern of faunal degradation and recovery observed in modern habitats affected by anoxia. All four successional stages of community structure recorded in modern studies are recognised in the fossil data (i.e. Stage III: climax; II: transitional; I: pioneer; 0: highly disturbed). Two main faunal turnover events occurred: (i) at the onset of anoxia, with the extinction of most benthic species and the survival of a few adapted to thrive in low-oxygen conditions (Stages I to 0) and (ii) in the recovery, when newly evolved species colonized the re-oxygenated soft sediments and the path of recovery did not retrace of pattern of ecological degradation (Stages I to II). The ordination of samples coupled with sedimentological and palaeotemperature proxy data indicate that the onset of anoxia and the extinction horizon coincide with both a rise in temperature and sea level. Our study of how faunal associations co-vary with long and short term sea level and temperature changes has implications for predicting the long-term effects of “dead zones” in modern oceans. PMID:23457537

The impact of global warming and anoxia on marine benthic community dynamics: an example from the Toarcian (Early Jurassic).

PubMed

Danise, Silvia; Twitchett, Richard J; Little, Crispin T S; Clémence, Marie-Emilie

2013-01-01

The Pliensbachian-Toarcian (Early Jurassic) fossil record is an archive of natural data of benthic community response to global warming and marine long-term hypoxia and anoxia. In the early Toarcian mean temperatures increased by the same order of magnitude as that predicted for the near future; laminated, organic-rich, black shales were deposited in many shallow water epicontinental basins; and a biotic crisis occurred in the marine realm, with the extinction of approximately 5% of families and 26% of genera. High-resolution quantitative abundance data of benthic invertebrates were collected from the Cleveland Basin (North Yorkshire, UK), and analysed with multivariate statistical methods to detect how the fauna responded to environmental changes during the early Toarcian. Twelve biofacies were identified. Their changes through time closely resemble the pattern of faunal degradation and recovery observed in modern habitats affected by anoxia. All four successional stages of community structure recorded in modern studies are recognised in the fossil data (i.e. Stage III: climax; II: transitional; I: pioneer; 0: highly disturbed). Two main faunal turnover events occurred: (i) at the onset of anoxia, with the extinction of most benthic species and the survival of a few adapted to thrive in low-oxygen conditions (Stages I to 0) and (ii) in the recovery, when newly evolved species colonized the re-oxygenated soft sediments and the path of recovery did not retrace of pattern of ecological degradation (Stages I to II). The ordination of samples coupled with sedimentological and palaeotemperature proxy data indicate that the onset of anoxia and the extinction horizon coincide with both a rise in temperature and sea level. Our study of how faunal associations co-vary with long and short term sea level and temperature changes has implications for predicting the long-term effects of "dead zones" in modern oceans.

Oxygen, carbon, and nutrient exchanges at the sediment-water interface in the Mar Piccolo of Taranto (Ionian Sea, southern Italy).

PubMed

De Vittor, Cinzia; Relitti, Federica; Kralj, Martina; Covelli, Stefano; Emili, Andrea

2016-07-01

In the shallow environment, the nutrient and carbon exchanges at the sediment-water interface contribute significantly to determine the trophic status of the whole water column. The intensity of the allochthonous input in a coastal environment subjected to strong anthropogenic pressures determines an increase in the benthic oxygen demand leading to depressed oxygen levels in the bottom waters. Anoxic conditions resulting from organic enrichment can enhance the exchange of nutrients between sediments and the overlying water. In the present study, carbon and nutrient fluxes at the sediment-water interface were measured at two experimental sites, one highly and one moderately contaminated, as reference point. In situ benthic flux measurements of dissolved species (O2, DIC, DOC, N-NO3 (-), N-NO2 (-), N-NH4 (+), P-PO4 (3-), Si-Si(OH)4, H2S) were conducted using benthic chambers. Furthermore, undisturbed sediment cores were collected for analyses of total and organic C, total N, and biopolymeric carbon (carbohydrates, proteins, and lipids) as well as of dissolved species in porewaters and supernatant in order to calculate the diffusive fluxes. The sediments were characterized by suboxic to anoxic conditions with redox values more negative in the highly contaminated site, which was also characterized by higher biopolymeric carbon content (most of all lipids), lower C/N ratios and generally higher diffusive fluxes, which could result in a higher release of contaminants. A great difference was observed between diffusive and in situ benthic fluxes suggesting the enhancing of fluxes by bioturbation and the occurrence of biogeochemically important processes at the sediment-water interface. The multi-contamination of both inorganic and organic pollutants, in the sediments of the Mar Piccolo of Taranto (declared SIN in 1998), potentially transferable to the water column and to the aquatic trophic chain, is of serious concern for its ecological relevance, also considering the widespread fishing and mussel farming activities in the area.

Larger benthic foraminifera of the Paleogene Promina Beds (Croatia)

NASA Astrophysics Data System (ADS)

Cosovic, V.; Mrinjek, E.; Drobne, K.

2012-04-01

In order to add more information about complex origin of Promina Beds (traditionally interpreted as Paleogene molasse of Dinarides), two sections (Lišani Ostrovački and Ostrovica, Central Dalmatia, Croatia) have been studied in detail. Sampled carbonate sequences contain predominantly coralline red algae, larger benthic foraminifera and corals. Based on sedimentary textures, nummulitid (Nummulites s.str and Asterigerina sp.) test shapes and the associated skeletal components, altogether three types of the Middle Eocene (Lutetian to Bartonian) facies were recognized. The Ostrovica section is composed of alternating couples of marly limestones and marls, several decimeters thick with great lateral continuity. Two facies which vertically alternate are recognized as Nummulites - Asterigerina facies, where patchily dispersed large, robust and party reworked larger benthic foraminifera constitute 20% and small bioclasts (fomaniniferal fragments and whole tests less than 3 mm in diameters) 10% of rock volume and, Coral - Red algal facies with coral fragments of solitary and colonial taxa up to 1 cm in size constitute 5 - 40%, red algae 15 - 60% and lager benthic foraminifera up to 5% of rock volume. The textural and compositional differences among the facies suggest rhythmic exchanges of conditions that characterize shallower part of the mesophotic zone with abundant nummulithoclasts with deeper mesophotic, lime mud-dominated settings where nummulitids with the flat tests, coralline red algae and scleractinian corals are common. The scleractinian corals (comprising up to 20% of rock volume) encrusted by foraminifera (Acervulina, Haddonia and nubeculariids) or coralline red algae and foraminiferal assemblage made of orthophragminid and nummulitid tests scattered in matrix, are distributed uniformly throughout the studied Lišani Ostrovački section. In the central part of section, wavy to smooth thin (< 1 mm) crusts (laminas) alternating with encrusted corals occur. The characteristics of associated fauna and spatial relationship between corals and laminations indicate that this facies originated in a mid-ramp (shelf) setting.

Assessing suitability of multispectral satellites for mapping benthic macroalgal cover in turbid coastal waters by means of model simulations

NASA Astrophysics Data System (ADS)

Kutser, Tiit; Vahtmäe, Ele; Martin, Georg

2006-04-01

One of the objectives of monitoring benthic algal cover is to observe short- and long-term changes in species distribution and structure of coastal benthic habitats as indicators of ecological state. Mapping benthic algal cover with conventional methods (diving) provides great accuracy and high resolution, yet is very expensive and is limited by the time and manpower necessary. We measured reflectance spectra of three indicator species for the Baltic Sea: Cladophora glomerata (green macroalgae), Furcellaria lumbricalis (red macroalgae), and Fucus vesiculosus (brown macroalgae) and used a bio-optical model in an attempt to estimate whether these algae are separable from each other and sandy bottom or deep water by means of satellite remote sensing. Our modelling results indicate that to some extent it is possible to map the studied species with multispectral satellite sensors in turbid waters. However, the depths where the macroalgae can be detected are often shallower than the maximum depths where the studied species usually grow. In waters deeper than just a few meters, the differences between the studied bottom types are seen only in band 2 (green) of the multispectral sensors under investigation. It means that multispectral sensors are capable of detecting difference in brightness only in one band which is insufficient for recognition of different bottom types in waters where no or few in situ data are available. Configuration of MERIS spectral bands allows the recognition of red, green and brown macroalgae based on their spectral signatures provided the algal belts are wider than MERIS spatial resolution. Commercial stock of F. lumbricalis in West-Estonian Archipelago covers area where MERIS 300 m spatial resolution is adequate. However, strong attenuation of light in the water column and signal to noise ratio of the sensor do not allow mapping of Furcellaria down to maximum depths where it occurs.

Natural disturbance shapes benthic intertidal macroinvertebrate communities of high latitude river deltas

USGS Publications Warehouse

Churchwell, Roy T.; Kendall, Steve J.; Blanchard, Amy L.; Dunton, Kenneth H.; Powell, Abby N.

2016-01-01

Unlike lower latitude coastlines, the estuarine nearshore zones of the Alaskan Beaufort Sea are icebound and frozen up to 9 months annually. This annual freezing event represents a dramatic physical disturbance to fauna living within intertidal sediments. The main objectives of this study were to describe the benthic communities of Beaufort Sea deltas, including temporal changes and trophic structure. Understanding benthic invertebrate communities provided a baseline for concurrent research on shorebird foraging ecology at these sites. We found that despite continuous year-to-year episodes of annual freezing, these estuarine deltas are populated by a range of invertebrates that represent both marine and freshwater assemblages. Freshwater organisms like Diptera and Oligochaeta not only survive this extreme event, but a marine invasion of infaunal organisms such as Amphipoda and Polychaeta rapidly recolonizes the delta mudflats following ice ablation. These delta sediments of sand, silt, and clay are fine in structure compared to sediments of other Beaufort Sea coastal intertidal habitats. The relatively depauperate invertebrate community that ultimately develops is composed of marine and freshwater benthic invertebrates. The composition of the infauna also reflects two strategies that make life on Beaufort Sea deltas possible: a migration of marine organisms from deeper lagoons to the intertidal and freshwater biota that survive the 9-month ice-covered period in frozen sediments. Stable isotopic analyses reveal that both infaunal assemblages assimilate marine and terrestrial sources of organic carbon. These results provide some of the first quantitative information on the infaunal food resources of shallow arctic estuarine systems and the long-term persistence of these invertebrate assemblages. Our data help explain the presence of large numbers of shorebirds in these habitats during the brief summer open-water period and their trophic importance to migrating waterfowl and nearshore populations of estuarine fishes that are the basis of subsistence lifestyles by native inhabitants of the Beaufort Sea coast.

Correlation of shallow marine, deep marine, and coastal terrestrial records of central California: asynchronous responses to paleoceanographic and paleoclimatic change during the past 19,000 years

NASA Astrophysics Data System (ADS)

McGann, M.

2016-12-01

Benthic and planktic foraminiferal census data combined with pollen data acquired from the continental margin off central California (core S3-15G, 3491 m depth from the western levy of the Monterey Fan; 36°23.53'N, 123°20.52'W) provide a unique opportunity to document concurrent paleoceanographic and paleoclimatic changes in the region during the late Quaternary. Radiocarbon dates and the ratio of the planktic foraminiferal species Neogloboquardrina pachyderma (Ehrenberg) to Neogloboquardrina incompta (Cifelli) provide a good age-depth model for the last 19,000 years. Q-mode cluster analysis of the benthic foraminifera grouped the fauna into two clusters reflecting faunal adaptation to changing climatic conditions during the Pleistocene and Holocene, whereas the R-mode cluster analysis identified glacial (Uvigerina senticosa and Globobulimina auriculata) and interglacial (Melonis pompilioides and Gyroidina planulata) faunas. A slight increase in oxygen concentration in the deep sea across the Pleistocene-Holocene transition is suggested by a reduction in abundance of G. auriculata and increased frequency of M. pompilioides. Q-mode cluster analysis of the planktic foraminifera indicates a change in the surface water from a glacial subpolar fauna in the Pleistocene to a transitional fauna in the Holocene. The pollen flora separated into three clusters by Q-mode cluster analysis, two of Pleistocene age (glacial and transitional) and one in the Holocene (interglacial), reflecting adaptation of the flora in the California Coast Ranges of central California to the warmer climate in the Holocene. Decoupling is evident between the benthic foraminiferal, planktic foraminiferal, and terrestrial floral responses to changing oceanographic and climatic conditions. The floral response leads the surface-dwelling planktic fauna by several millennia, and is followed by the deep-dwelling benthic fauna a millennium later.

Benthic foraminifera in the plankton following storms: what does this mean for (palaeo)-ecological interpretations?

NASA Astrophysics Data System (ADS)

Hart, Malcolm; Molina, Giulia; Smart, Christopher; Widdicombe, Claire

2017-04-01

The Western Channel Observatory was established by the Natural Environment Research Council (NERC), with Plymouth Marine Laboratory managing the two autonomous buoys that are located to the south of Plymouth in the English Channel (Stations L4 and E1): see Smyth et al. (2015). These two locations are now monitored continually and there is regular sampling of the water column and the sea floor at both locations. At Station L4, despite being in waters with a depth of 50 m, benthic foraminifera are regularly found in the surface water plankton samples. Some of these benthic foraminifera contain algal symbionts, indicating that they may be living at the time of capture. If benthic foraminifera can be entrained in the water column, while still living, then this provides a mechanism for 'migration' that is much more rapid and efficient than the rate at which protists could migrate within, or on, the sediment surface. Recolonization by foraminifera, following disturbance, could well be facilitated by this mechanism which has only rarely been reported in the literature (e.g., Murray, 1965). It is clearly limited to depths impacted by fair weather ( 30 m) or storm wave base (80 - 100 m). Data gathered during winter 2015-2016 certainly indicate that, following storm events, the larger the number of benthic foraminifera in the plankton tows and the greater their overall size. Some of the individuals being observed appear to contain sediment, indicating that they have been picked up from the sediment surface and, despite their greater weight, have still been transported into the plankton. Using data from the nearby sea area, off-shore and within Plymouth Sound, we are trying to ascertain if the recorded assemblage is from the L4 area, or whether they have been transported out from shallower-water environments, possibly assisted by increased run-off caused by heavy rainfall (associated with the storms). Clearly, re-distribution of foraminifera in the environment might make subsequent interpretations of ecology less accurate, but in the fossil record such changes could go completely undetected and lead to considerable inaccuracy in the interpretation of palaeoecology. Murray, J.W. 1965. Significance of benthic foraminiferids in plankton samples. Journal of Paleontology, 39, 156-157. Smyth, T., Atkinson, A., Widdicombe, S., Frost, M., Allen, I., Fishwick, J., Queiros, A., Sims, D. & Barange, M. 2015. The Western Channel Observatory. Progress in Oceanography, 137, 335-341.

Using light-dependent scleractinia to define the upper boundary of mesophotic coral ecosystems on the reefs of Utila, Honduras.

PubMed

Laverick, Jack H; Andradi-Brown, Dominic A; Rogers, Alex D

2017-01-01

Shallow water zooxanthellate coral reefs grade into ecologically distinct mesophotic coral ecosystems (MCEs) deeper in the euphotic zone. MCEs are widely considered to start at an absolute depth limit of 30m deep, possibly failing to recognise that these are distinct ecological communities that may shift shallower or deeper depending on local environmental conditions. This study aimed to explore whether MCEs represent distinct biological communities, the upper boundary of which can be defined and whether the depth at which they occur may vary above or below 30m. Mixed-gas diving and closed-circuit rebreathers were used to quantitatively survey benthic communities across shallow to mesophotic reef gradients around the island of Utila, Honduras. Depths of up to 85m were sampled, covering the vertical range of the zooxanthellate corals around Utila. We investigate vertical reef zonation using a variety of ecological metrics to identify community shifts with depth, and the appropriateness of different metrics to define the upper MCE boundary. Patterns observed in scleractinian community composition varied between ordination analyses and approaches utilising biodiversity indices. Indices and richness approaches revealed vertical community transition was a gradation. Ordination approaches suggest the possibility of recognising two scleractinian assemblages. We could detect a mesophotic and shallow community while illustrating that belief in a static depth limit is biologically unjustified. The switch between these two communities occurred across bathymetric gradients as small as 10m and as large as 50m in depth. The difference between communities appears to be a loss of shallow specialists and increase in depth-generalist taxa. Therefore, it may be possible to define MCEs by a loss of shallow specialist species. To support a biological definition of mesophotic reefs, we advocate this analytical framework should be applied around the Caribbean and extended into other ocean basins where MCEs are present.

Atoll-scale patterns in coral reef community structure: Human signatures on Ulithi Atoll, Micronesia

PubMed Central

Nelson, Peter; Abelson, Avigdor; Precoda, Kristin; Rulmal, John; Bernardi, Giacomo; Paddack, Michelle

2017-01-01

The dynamic relationship between reefs and the people who utilize them at a subsistence level is poorly understood. This paper characterizes atoll-scale patterns in shallow coral reef habitat and fish community structure, and correlates these with environmental characteristics and anthropogenic factors, critical to conservation efforts for the reefs and the people who depend on them. Hierarchical clustering analyses by site for benthic composition and fish community resulted in the same 3 major clusters: cluster 1–oceanic (close proximity to deep water) and uninhabited (low human impact); cluster 2–oceanic and inhabited (high human impact); and cluster 3–lagoonal (facing the inside of the lagoon) and inhabited (highest human impact). Distance from village, reef exposure to deep water and human population size had the greatest effect in predicting the fish and benthic community structure. Our study demonstrates a strong association between benthic and fish community structure and human use across the Ulithi Atoll (Yap State, Federated States of Micronesia) and confirms a pattern observed by local people that an ‘opportunistic’ scleractinian coral (Montipora sp.) is associated with more highly impacted reefs. Our findings suggest that small human populations (subsistence fishing) can nevertheless have considerable ecological impacts on reefs due, in part, to changes in fishing practices rather than overfishing per se, as well as larger global trends. Findings from this work can assist in building local capacity to manage reef resources across an atoll-wide scale, and illustrates the importance of anthropogenic impact even in small communities. PMID:28489903

Foraminiferal biostratigraphy of Upper Cretaceous (Campanian - Maastrichtian) sequences in the Peri-Tethys basin; Moghan area, NW Iran

NASA Astrophysics Data System (ADS)

Omidvar, Mahboobeh; Safari, Amrollah; Vaziri-Moghaddam, Hossain; Ghalavand, Hormoz

2018-04-01

The Upper Cretaceous sediments in the Moghan area, NW Iran, contain diverse planktonic and benthic foraminifera, with a total of 33 genera and 53 species (17 genera and 38 species of planktonic foraminifera and 16 genera and 15 species from benthic foraminifera), which led to the identification of six biozones spanning the middle Campanian to late Maastrichtian. A detailed paleontological study and biostratigraphic zonation of these sequences has been carried out in four surface sections. This study shows that there are two different facies in the Moghan area, based on the faunal content. A deep open marine condition exists in the Molok, Selenchai and Nasirkandi sections. In these sections, Upper Cretaceous sequences have diverse planktonic foraminiferal species including the Globotruncana ventricosa (middle to late Campanian), Globotruncanella havanensis (late Campanian), Globotruncana aegyptiaca (latest Campanian), Gansserina gansseri (latest Campanian to early Maastrichtian), Contusotruncana contusa- Racemiguembelina fructicosa (early to late Maastrichtian) and Abathomphalus mayaroensis (late Maastrichtian) zones. This deep open marine setting grades laterally into shallower marine condition dominated by large benthic foraminifera such as Orbitoides media, Orbitoides gruenbachensis, Orbitoides cf. apiculata, Lepidorbitoides minor, Pseudosiderolites sp., Siderolites praecalcitrapoides, Siderolites aff. calcitrapoides and Siderolites calcitrapoides. This facies is mainly recorded in the Hovay section. A detailed biostratigraphic zonation scheme is presented for the studied sections and correlated with the results of other studies in the Tethyan realm. This is the first biozonation scheme for Upper Cretaceous sequences of the Moghan area that can be used as a basis for ongoing studies in this area and other parts of Tethys basin.

Climate warming reduces fish production and benthic habitat in Lake Tanganyika, one of the most biodiverse freshwater ecosystems

USGS Publications Warehouse

Cohen, Andrew S.; Gergurich, Elizabeth L.; Kraemer, Benjamin M.; McGlue, Michael M.; McIntyre, Peter B.; Russell, James M.; Simmons, Jack D.; Swarzenski, Peter W.

2016-01-01

Warming climates are rapidly transforming lake ecosystems worldwide, but the breadth of changes in tropical lakes is poorly documented. Sustainable management of freshwater fisheries and biodiversity requires accounting for historical and ongoing stressors such as climate change and harvest intensity. This is problematic in tropical Africa, where records of ecosystem change are limited and local populations rely heavily on lakes for nutrition. Here, using a ∼1,500-y paleoecological record, we show that declines in fishery species and endemic molluscs began well before commercial fishing in Lake Tanganyika, Africa’s deepest and oldest lake. Paleoclimate and instrumental records demonstrate sustained warming in this lake during the last ∼150 y, which affects biota by strengthening and shallowing stratification of the water column. Reductions in lake mixing have depressed algal production and shrunk the oxygenated benthic habitat by 38% in our study areas, yielding fish and mollusc declines. Late-20th century fish fossil abundances at two of three sites were lower than at any other time in the last millennium and fell in concert with reduced diatom abundance and warming water. A negative correlation between lake temperature and fish and mollusc fossils over the last ∼500 y indicates that climate warming and intensifying stratification have almost certainly reduced potential fishery production, helping to explain ongoing declines in fish catches. Long-term declines of both benthic and pelagic species underscore the urgency of strategic efforts to sustain Lake Tanganyika’s extraordinary biodiversity and ecosystem services.

Anadromous sea lampreys (Petromyzon marinus) are ecosystem engineers in a spawning tributary

USGS Publications Warehouse

Hogg, Robert S.; Coghlan, Stephen M.; Zydlewski, Joseph D.; Simon, Kevin S.

2014-01-01

Sea lampreys (Petromyzon marinus) disturb the substratum during nest construction and alter the physical habitat, potentially affecting other stream organisms. We quantified differences in depth, velocity, fine-sediment coverage, embeddedness, intragravel permeability and benthic invertebrate assemblages (density and diversity) among nest mounds, nest pits and undisturbed reference locations over a 4-month period after June spawning. In 2010 and 2011, immediate and persistent effects of nest construction were assessed in summer (July) and in autumn (late September to early October), respectively. Randomly selected nests were sampled annually (25 each in summer and autumn). Nest construction increased stream-bed complexity by creating and juxtaposing shallow, swift, rocky habitat patches with deep, slow, sandy habitat patches. Mounds had a 50–143% less cover of fine sediment, and a 30–62% reduction in embeddedness, compared to pits and reference locations. These physical changes persisted into the autumn (almost 4 months). Five insect families contributed 74% of the benthic invertebrate abundance: Chironomidae (27%), Hydropsychidae (26%), Heptageniidae (8%), Philopotamidae (7%) and Ephemerellidae (6%). Densities of Hydropsychidae, Philopotamidae and Heptageniidae were up to 10 times greater in mounds than in pits and adjacent reference habitat. In summer, mounds had twice the density of Chironomidae than did pits, and 1.5 times more than reference habitats, but densities were similar among the habitats in autumn. These results suggest that spawning sea lampreys are ecosystem engineers. The physical disturbance caused by nest-building activity was significant and persistent, increasing habitat heterogeneity and favouring pollution-sensitive benthic invertebrates and, possibly, drift-feeding fish.

Benthic Biotic Response to Climate Changes over the Last 700,000 Years, the Sea of Japan: Ostracode Assemblages from Site U1427, IODP Expedition 346

NASA Astrophysics Data System (ADS)

Huang, H. H. M.; Yasuhara, M.; Iwatani, H.; Alvarez Zarikian, C. A.; Bassetti, M. A.; Sagawa, T.

2016-12-01

The Sea of Japan is a marginal sea, semi-enclosed by the Eurasian Continent, Korean Peninsula, Japanese Islands, and shallow straits (water depth < 130 m). Marginal seas are ideal natural laboratories to study biotic responses to large-scale paleoclimate-ocean mechanisms as they are typically sensitive to glacial/interglacial and stadial/interstadial cycles. The modern oceanographic setting in the Sea of Japan is characterized by the influx of the Tsushima Warm Current (TWC) from the East China Sea, and this setting was formed 1.7 My ago by tectonic subsidence of the Tsushima Strait. The Sea of Japan, therefore, is an interesting research subject for studying the biotic response to orbital-scale climate changes and benthic faunal development under the influence of TWC. Here we present 700,000-year record of benthic biotic response to the paleoceanographic changes in the southern Sea of Japan based on ostracode assemblage reconstruction at IODP Site U1427. Five local extinction events were caused by extreme bottom conditions (mainly oxygen depletion) during the Ice Age Terminations I, II, IV, V, and VII. Primary and secondary ostracode assemblages were revealed by Q-mode k-means clustering, CABFAC factor analysis, and non-metric multidimensional scaling. The primary ostracode components, characterized by Krithe sawanensis and Cytheropteron hyalinosa, broadly reflect glacial/interglacial and high-latitude insolation cycles. In contrast, a faunal shift determined by the secondary faunal components was driven by the TWC enhancement at 300 ka.

Abundance and distribution of benthic macroinvertebrates in offshore soft sediments in Western Lake Huron, 2001-2007

USGS Publications Warehouse

French, J. R. P.; Schaeffer, J.S.; Roseman, E.F.; Kiley, C.S.; Fouilleroux, A.

2009-01-01

Invasive species have had major impacts on the Great Lakes. This is especially true of exotic dreissenid mussels which are associated with decreased abundance of native macroinvertebrates and changes in food availability for fish. Beginning in 2001, we added a benthic macroinvertebrate survey to the USGS-Great Lakes Science Center's annual fall prey fish assessment of Lake Huron to monitor abundance of macrobenthos. Mean abundance of Diporeia, the most abundant benthic taxon in Lake Huron reported by previous investigators, declined greatly between 2001 and 2007. Diporeia was virtually absent at 27-m sites by 2001, decreased and was lost completely from 46-m depths by 2006, but remained present at reduced densities at 73-m sites. Dreissenids in our samples were almost entirely quagga mussels Dreissena bugensis. Zebra mussels Dreissena polymorpha were virtually absent from our samples, suggesting that they were confined to nearshore areas shallower than we sampled. Loss of Diporeia at individual sites was associated with arrival of quagga mussels, even when mussel densities were low. Quagga mussel density peaked during 2002, then decreased thereafter. During the study quagga mussels became established at most 46-m sites, but remained rare at 73-m sites. Length frequency distributions suggest that initial widespread recruitment may have occurred during 2001-2002. Like other Great Lakes, Lake Huron quagga mussels were associated with decreased abundance of native taxa, but negative effects occurred even though dreissenid densities were much lower. Dreissenid effects may extend well into deep oligotrophic habitats of Lake Huron.

Disturbance facilitates the coexistence of antagonistic ecosystem engineers in California estuaries.

PubMed

Castorani, Max C N; Hovel, Kevin A; Williams, Susan L; Baskett, Marissa L

2014-08-01

Ecological theory predicts that interactions between antagonistic ecosystem engineers can lead to local competitive exclusion, but disturbance can facilitate broader coexistence. However, few empirical studies have tested the potential for disturbance to mediate competition between engineers. We examined the capacity for disturbance and habitat modification to explain the disjunct distributions of two benthic ecosystem engineers, eelgrass Zostera marina and the burrowing ghost shrimp Neotrypaea californiensis, in two California estuaries. Sediment sampling in eelgrass and ghost shrimp patches revealed that ghost shrimp change benthic biogeochemistry over small scales (centimeters) but not patch scales (meters to tens of meters), suggesting a limited capacity for sediment modification to explain species distributions. To determine the relative competitive abilities of engineers, we conducted reciprocal transplantations of ghost shrimp and eelgrass. Local ghost shrimp densities declined rapidly following the addition of eelgrass, and transplanted eelgrass expanded laterally into the surrounding ghost shrimp-dominated areas. When transplanted into eelgrass patches, ghost shrimp failed to persist. Ghost shrimp were also displaced from plots with structural mimics of eelgrass rhizomes and roots, suggesting that autogenic habitat modification by eelgrass is an important mechanism determining ghost shrimp distributions. However, ghost shrimp were able to rapidly colonize experimental disturbances to eelgrass patch edges, which are common in shallow estuaries. We conclude that coexistence in this system is maintained by spatiotemporally asynchronous disturbances and a competition-colonization trade-off: eelgrass is a competitively superior ecosystem engineer, but benthic disturbances permit the coexistence of ghost shrimp at the landscape scale by modulating the availability of space.

New cores-top Mg/Ca calibration of multiple benthic foraminiferal species: Thermometry of the thermocline water in Tropical western Atlantic

NASA Astrophysics Data System (ADS)

Tisserand, A.; Dokken, T.; Scao, V.; Jorissen, F.; Fontanier, C.

2009-04-01

A cruise with the research vessel G.O. SARS was carried out from 07 to 20 December 2007 within the framework of the European Science Foundation (EuroMARC) project RETRO, which aims to reconstruct changes within the thermocline in the tropics during periods of reduced Meridional Overturning Circulation (MOC). As part of this strategy we need a best possible calibration of methods to reproduce water mass properties, and part of the goal of this cruise was to get a good representation of the thermocline area present at the Brazilian Atlantic margin. The method used to map the thermocline gradient in the western tropical Atlantic is to use the concept of Magnesium/Calcium (Mg/Ca) on bottom water living foraminifera as a representation of temperature at site. The Mg/Ca thermometry on deep-dwelling foraminifera calibrated vs. δ18O measurements provides an estimate of depth of thermocline penetration in modern climate. Knowing the function of modern representation of the thermocline defined by Mg/Ca, we can use this concept to map thermocline deepening/shallowing in the past. The Mg/Ca ratios in benthic foraminiferal calcite are considered as the most commonly used and a reliable paleo-proxy for reconstructing bottom-water temperatures. Mg/Ca ratios of thermocline and deep-dwelling benthic foraminiferal species were determined on cores-top samples from a depth transect from the western tropical Atlantic, spanning a depth range of 600 to 1000 m representing a temperature range of 6 to 4

Early detection of potentially invasive invertebrate species in Mytilus galloprovincialis Lamarck, 1819 dominated communities in harbours

NASA Astrophysics Data System (ADS)

Preda, Cristina; Memedemin, Daniyar; Skolka, Marius; Cogălniceanu, Dan

2012-12-01

Constanţa harbour is a major port on the western coast of the semi-enclosed Black Sea. Its brackish waters and low species richness make it vulnerable to invasions. The intensive maritime traffic through Constanţa harbour facilitates the arrival of alien species. We investigated the species composition of the mussel beds on vertical artificial concrete substrate inside the harbour. We selected this habitat for study because it is frequently affected by fluctuating levels of temperature, salinity and dissolved oxygen, and by accidental pollution episodes. The shallow communities inhabiting it are thus unstable and often restructured, prone to accept alien species. Monthly samples were collected from three locations from the upper layer of hard artificial substrata (maximum depth 2 m) during two consecutive years. Ten alien macro-invertebrate species were inventoried, representing 13.5% of the total number of species. Two of these alien species were sampled starting the end of summer 2010, following a period of high temperatures that triggered hypoxia, causing mass mortalities of benthic organisms. Based on the species accumulation curve, we estimated that we have detected all benthic alien species on artificial substrate from Constanţa harbour, but additional effort is required to detect all the native species. Our results suggest that monitoring of benthic communities at small depths in harbours is a simple and useful tool in early detection of potentially invasive alien species. The selected habitat is easily accessible, the method is low-cost, and the samples represent reliable indicators of alien species establishment.

Biological community structure on patch reefs in Biscayne National Park, FL, USA

USGS Publications Warehouse

Kuffner, Ilsa B.; Grober-Dunsmore, Rikki; Brock, John C.; Hickey, T. Don

2010-01-01

Coral reef ecosystem management benefits from continual quantitative assessment of the resources being managed, plus assessment of factors that affect distribution patterns of organisms in the ecosystem. In this study, we investigate the relationships among physical, benthic, and fish variables in an effort to help explain the distribution patterns of organisms on patch reefs within Biscayne National Park, FL, USA. We visited a total of 196 randomly selected sampling stations on 12 shallow (<10 m) patch reefs and measured physical variables (e.g., substratum rugosity, substratum type) and benthic and fish community variables. We also incorporated data on substratum rugosity collected remotely via airborne laser surveying (Experimental Advanced Airborne Research Lidar—EAARL). Across all stations, only weak relationships were found between physical, benthic cover, and fish assemblage variables. Much of the variance was attributable to a “reef effect,” meaning that community structure and organism abundances were more variable at stations among reefs than within reefs. However, when the reef effect was accounted for and removed statistically, patterns were detected. Within reefs, juvenile scarids were most abundant at stations with high coverage of the fleshy macroalgae Dictyota spp., and the calcified alga Halimeda tuna was most abundant at stations with low EAARL rugosity. Explanations for the overwhelming importance of “reef” in explaining variance in our dataset could include the stochastic arrangement of organisms on patch reefs related to variable larval recruitment in space and time and/or strong historical effects due to patchy disturbances (e.g., hurricanes, fishing), as well as legacy effects of prior residents (“priority” effects).

Climate warming reduces fish production and benthic habitat in Lake Tanganyika, one of the most biodiverse freshwater ecosystems

PubMed Central

Gergurich, Elizabeth L.; Kraemer, Benjamin M.; McGlue, Michael M.; McIntyre, Peter B.; Russell, James M.; Simmons, Jack D.; Swarzenski, Peter W.

2016-01-01

Warming climates are rapidly transforming lake ecosystems worldwide, but the breadth of changes in tropical lakes is poorly documented. Sustainable management of freshwater fisheries and biodiversity requires accounting for historical and ongoing stressors such as climate change and harvest intensity. This is problematic in tropical Africa, where records of ecosystem change are limited and local populations rely heavily on lakes for nutrition. Here, using a ∼1,500-y paleoecological record, we show that declines in fishery species and endemic molluscs began well before commercial fishing in Lake Tanganyika, Africa’s deepest and oldest lake. Paleoclimate and instrumental records demonstrate sustained warming in this lake during the last ∼150 y, which affects biota by strengthening and shallowing stratification of the water column. Reductions in lake mixing have depressed algal production and shrunk the oxygenated benthic habitat by 38% in our study areas, yielding fish and mollusc declines. Late-20th century fish fossil abundances at two of three sites were lower than at any other time in the last millennium and fell in concert with reduced diatom abundance and warming water. A negative correlation between lake temperature and fish and mollusc fossils over the last ∼500 y indicates that climate warming and intensifying stratification have almost certainly reduced potential fishery production, helping to explain ongoing declines in fish catches. Long-term declines of both benthic and pelagic species underscore the urgency of strategic efforts to sustain Lake Tanganyika’s extraordinary biodiversity and ecosystem services. PMID:27503877

Contributions to a shallow aquifer study by reprocessed seismic sections from petroleum exploration surveys, eastern Abu Dhabi, United Arab Emirates

USGS Publications Warehouse

Woodward, D.

1994-01-01

The US Geological Survey, in cooperation with the National Drilling Company of Abu Dhabi, is conducting a 4-year study of the fresh and slightly saline groundwater resources of the eastern Abu Dhabi Emirate. Most of this water occurs in a shallow aquifer, generally less than 150 m deep, in the Al Ain area. A critical part of the Al Ain area coincides with a former petroleum concession area where about 2780 km of vibroseis data were collected along 94 seismic lines during 1981-1983. Field methods, acquistion parameters, and section processing were originally designed to enhance reflections expected at depths ranging from 5000 to 6000 m, and subsurface features directly associated with the shallow aquifer system were deleted from the original seismic sections. The original field tapes from the vibroseis survey were reprocessed in an attempt to extract shallow subsurface information (depths less than 550 m) for investigating the shallow aquifer. A unique sequence of reproccessing parameters was established after reviewing the results from many experimental tests. Many enhancements to the resolution of shallow seismic reflections resulted from: (1) application of a 20-Hz, low-cut filter; (2) recomputation of static corrections to a datum nearer the land surface; (3) intensive velocity analyses; and (4) near-trace muting analyses. The number, resolution, and lateral continuity of shallow reflections were greatly enhanced on the reprocessed sections, as was the delineation of shallow, major faults. Reflections on a synthetic seismogram, created from a borehole drilled to a depth of 786 m on seismic line IQS-11, matcheddprecisely with shallow reflections on the reprocessed section. The 33 reprocessed sections were instrumental in preparing a map showing the major structural features that affect the shallow aquifer system. Analysis of the map provides a better understanding of the effect of these shallow features on the regional occurrence, movement, and quality of groundwater in the concession area. Results from this study demonstrate that original seismic field tapes collected for deep petroleum exploration can be reprocessed to explore for groundwater. ?? 1994.

Spiculosiphon oceana (Foraminifera) a new bio-indicator of acidic environments related to fluid emissions of the Zannone Hydrothermal Field (central Tyrrhenian Sea).

PubMed

Di Bella, Letizia; Ingrassia, Michela; Frezza, Virgilio; Chiocci, Francesco L; Pecci, Raffaella; Bedini, Rossella; Martorelli, Eleonora

2018-05-01

The new record of a shallow-water submarine hydrothermal field (<150 m w.d.) in the western Mediterranean Sea (Tyrrhenian Sea, Italy) allows us to study CO 2 fluid impact on benthic foraminifers. Benthic foraminifers calcification process is sensitive to ocean acidification and to local chemical and physical parameters of seawater and pore water. Thus, foraminifers can record specific environmental conditions related to hydrothermal fluids, but at present their response to such activity is poorly defined. The major outcome of this study is the finding of a very uncommon taxon for the Mediterranean Sea, i.e., the Spiculosiphon oceana, a giant foraminifer agglutinating spicules of sponges. This evidence, along with the strong decrease of calcareous tests in the foraminiferal assemblages associated to hydrothermal activity, provides new insights on the meiofauna living in natural stressed environment. In particular, observations obtained from this study allow us to consider S. oceana a potential tolerant species of high CO 2 concentrations (about 2-4 times higher than the normal marine values) and a proxy of acidic environments as well as of recent ocean acidification processes. Copyright © 2018 Elsevier Ltd. All rights reserved.

In situ observations of wave pumping of sediments in the Yellow River Delta with a newly developed benthic chamber

NASA Astrophysics Data System (ADS)

Zhang, Shaotong; Jia, Yonggang; Zhang, Yaqi; Liu, Xiaolei; Shan, Hongxian

2018-03-01

A specially designed benthic chamber for the field observation of sediment resuspension that is caused by the wave-induced oscillatory seepage effect (i.e., the wave pumping of sediments) is newly developed. Observational results from the first sea trial prove that the geometry design and skillful instrumentation of the chamber well realize the goal of monitoring the wave pumping of sediments (WPS) continuously. Based on this field dataset, the quantitative contribution of the WPS to the total sediment resuspension is estimated to be 20-60% merely under the continuous action of normal waves (Hs ≤ 1.5 m) in the subaqueous Yellow River Delta (YRD). Such a large contribution invalidates a commonly held opinion that sediments are purely eroded from the seabed surface by the horizontal "shearing effect" from the wave orbital or current velocities. In fact, a considerable amount of sediments could originate from the shallow subsurface of seabed driven by the vertical "pumping effect" of the wave-generated seepage flows during wavy periods. According to the new findings, an improved conceptual model for the resuspension mechanisms of silty sediments under various hydrodynamics is proposed for the first time.

Abrupt Changes in Bottom Water Benthic Foraminiferal Assemblages during Heinrich Events 1-4

NASA Astrophysics Data System (ADS)

Lazar, K.; Rashid, H.; Vermooten, M.; Mingqiu, D.

2017-12-01

The extent to which Heinrich iceberg-rafting events modify bottom water ecology resulting in changes in benthic foraminifera is poorly known. Here, we report centennial to millennial scale changes in the benthic foraminiferal assemblages from sediment core Pa96018-06 (47.75oN; 46.21oW). It was collected on the northern slope of the Flemish Pass of southern Labrador Sea and is bathed by Labrador Sea Water, one of the major components of the meridional overturning circulation of the Atlantic. Benthic foraminiferal assemblages were determined and numerous species identified. X-ray fluorescence (XRF) on the bulk sediments and iceberg-rafted detritus (IRD) in addition to oxygen isotopes on polar planktonic foraminiferal Neogloboquadrina pachyderma (sinistral) were used to identify the detrital carbonate-rich Heinrich iceberg-rafting events 1 to 4. Changes in the total numbers of Elphidium excavatum subsp. clavatum typically mirror changes in the total benthic population, yet the percentage of E. e. clavatum as part of the total sample increases through time. E. e. clavatum comprises approximately 60% of the benthic assemblage in H4, and steadily increases to 80% of the assemblage in H1 and H2. Total benthic foraminiferal numbers increase at the onset of each Heinrich event, with the two largest peaks in the entire record characterizing H2 and H3. In addition, the fine-scale feature in H1 suggests an initial decrease in the % E. e. clavatum (and total benthics) which then increased to 85% of the assemblage during the latter part of H1. Our data suggest that harsh living conditions prevailed during the initial phases of Heinrich events when the availability of meltwater and the deposition of fine-grained carbonate sediments were dominant. However, it appears that the ecology was favorable for E. e. clavatum during the latter phase of Heinrich events when the deposition of fine-grained sediments dissipated and the supply of meltwater was limited. These latter stages, especially of H2 and H3, suggest a unique and extreme environment in which E. e. clavatum flourished while many other foraminifers were unable to recover. Typical of extreme cold-water, low-salinity environments, E. e. clavatum is likely a useful benthic foraminifer for tracking extreme iceberg-rafting events as preserved in the sedimentary record.

Habitat use by fishes of Lake Superior. II. Consequences of diel habitat use for habitat linkages and habitat coupling in nearshore and offshore waters

USGS Publications Warehouse

Gorman, Owen T.; Yule, Daniel L.; Stockwell, Jason D.

2012-01-01

Diel migration patterns of fishes in nearshore (15–80 m depth) and offshore (>80 m) waters of Lake Superior were examined to assess the potential for diel migration to link benthic and pelagic, and nearshore and offshore habitats. In our companion article, we described three types of diel migration: diel vertical migration (DVM), diel bank migration (DBM), and no diel migration. DVM was expressed by fishes migrating from benthopelagic to pelagic positions and DBM was expressed by fishes migrating horizontally from deep to shallow waters at night. Fishes not exhibiting diel migration typically showed increased activity by moving from benthic to benthopelagic positions within demersal habitat. The distribution and biomass of fishes in Lake Superior was characterized by examining 704 bottom trawl samples collected between 2001 and 2008 from four depth zones: ≤40, 41–80, 81–160, and >160 m. Diel migration behaviors of fishes described in our companion article were applied to estimates of areal biomass (kg ha−1) for each species by depth zone. The relative strength of diel migrations were assessed by applying lake area to areal biomass estimates for each species by depth zone to yield estimates of lake-wide biomass (metric tonnes). Overall, species expressing DVM accounted for 83%, DBM 6%, and non-migration 11% of the total lake-wide community biomass. In nearshore waters, species expressing DVM represented 74% of the biomass, DBM 25%, and non-migration 1%. In offshore waters, species expressing DVM represented 85%, DBM 1%, and non-migration 14% of the biomass. Of species expressing DVM, 83% of total biomass occurred in offshore waters. Similarly, 97% of biomass of non-migrators occurred in offshore waters while 83% of biomass of species expressing DBM occurred in nearshore waters. A high correlation (R2 = 0.996) between lake area and community biomass by depth zone resulted in 81% of the lake-wide biomass occurring in offshore waters. Accentuating this nearshore-offshore trend was one of increasing estimated total areal biomass of the fish community with depth zone, which ranged from 13.71 kg ha−1 at depths ≤40 m to 18.81 kg ha−1 at depths >160 m, emphasizing the importance of the offshore fish community to the lake ecosystem. The prevalence of diel migration expressed by Lake Superior fishes increases the potential of fish to link benthic and pelagic and shallow and deepwater habitats. These linkages enhance the potential for habitat coupling, a condition where habitats become interconnected and interdependent through transfers of energy and nutrients. Habitat coupling facilitates energy and nutrient flow through a lake ecosystem, thereby increasing productivity, especially in large lakes where benthic and pelagic, and nearshore and offshore habitats are often well separated. We propose that the application of biomass estimates to patterns of diel migration in fishes can serve as a useful metric for assessing the potential for habitat linkages and habitat coupling in lake ecosystems, and provide an important indicator of ecosystem health and function. The decline of native Lake Trout and ciscoes and recent declines in exotic Alewife and Rainbow Smelt populations in other Great Lakes have likely reduced the capacity for benthic-pelagic coupling in these systems compared to Lake Superior. We recommend comparing the levels and temporal changes in diel migration in other Great Lakes as a means to assess changes in the relative health and function of these ecosystems.

Subsurface classification of objects under turbid waters by means of regularization techniques applied to real hyperspectral data

NASA Astrophysics Data System (ADS)

Carpena, Emmanuel; Jiménez, Luis O.; Arzuaga, Emmanuel; Fonseca, Sujeily; Reyes, Ernesto; Figueroa, Juan

2017-05-01

Improved benthic habitat mapping is needed to monitor coral reefs around the world and to assist coastal zones management programs. A fundamental challenge to remotely sensed mapping of coastal shallow waters is due to the significant disparity in the optical properties of the water column caused by the interaction between the coast and the sea. The objects to be classified have weak signals that interact with turbid waters that include sediments. In real scenarios, the absorption and backscattering coefficients are unknown with different sources of variability (river discharges and coastal interactions). Under normal circumstances, another unknown variable is the depth of shallow waters. This paper presents the development of algorithms for retrieving information and its application to the classification and mapping of objects under coastal shallow waters with different unknown concentrations of sediments. A mathematical model that simplifies the radiative transfer equation was used to quantify the interaction between the object of interest, the medium and the sensor. The retrieval of information requires the development of mathematical models and processing tools in the area of inversion, image reconstruction and classification of hyperspectral data. The algorithms developed were applied to one set of real hyperspectral imagery taken in a tank filled with water and TiO2 that emulates turbid coastal shallow waters. Tikhonov method of regularization was used in the inversion process to estimate the bottom albedo of the water tank using a priori information in the form of stored spectral signatures, previously measured, of objects of interest.

Long-term impact of bottom trawling on pelagic-benthic coupling in the southern North Sea (German Bight)

NASA Astrophysics Data System (ADS)

Friedrich, Jana; van Beusekom, Justus E. E.; Neumann, Andreas; Naderipour, Celine; Janssen, Felix; Ahmerkamp, Soeren; Holtappels, Moritz; Schueckel, Ulrike

2016-04-01

The southern North Sea, and the German Bight, has been systematically bottom-trawled at least since the late 19th century (Christiansen, 2009; Reiss et al., 2009; Kröncke 2011; Emeis et al., 2015, Neumann et al., 2016). As a result, benthic habitats and benthic biogenic structures created by bivalves, polychaetes and hydroids where destroyed or reduced. The parallel removal of hard substrate (gravel and boulders) avoids the resettlement of hard-substrate depended species. For example, the Oyster ground, a huge oyster bank a hundred years ago (Olsen, 1883), turned into a muddy depression today. In addition, shallow depth of max 40 m, strong tidal currents and frequent storms result in a high-energy environment with low sedimentation rates and recurrent sediment resuspension. The decrease in benthic filtering capacity by disturbance in epifauna and bottom roughness (Callaway et al., 2007) apparently influence pelagic-benthic coupling of biogeochemical fluxes. Heip et al. (1995) indicate that benthic respiration at depths prevailing in the German Bight accounts for 10-40% of total respiration, whereas pelagic respiration accounts for 60-90%. Previous estimates are in the middle of this range (Heip et al., 1995). To test these hypotheses and to assess the partitioning of benthic and pelagic processes, and the factors influencing organic matter mineralization, we measured pelagic production and respiration based on Winkler titration, in-situ benthic fluxes using chamber landers, we did ex-situ incubations of intact sediment cores and analysed still images from a towed benthic video sled. In addition, O2 fluxes in permeable sediments were estimated by integrating the volumetric rate measurements of the upper sediment layer over in-situ microsensor-measured O2 penetration depth. Our current results show significant seasonality in benthic respiration, with highest rates in summer and lowest rates in winter. No significant differences in total benthic respiration rates were measured on sandy (permeable) and silty (diffusive) sediments, whereas significant differences of microbial O2 uptake were observed indeed between permeable and diffusive sediments. Nevertheless, when considering the multitude of different methods, we found that benthic respiration over the season seemed to be governed mainly by settling of fresh organic matter during calm periods and its rapid turnover in a region where strong tidal and wind-forced currents distribute suspended particles over large areas. Summer pelagic respiration rates were an order of magnitude higher then benthic rates, and account for 88-93% of total respiration, which represents 79-98% of pelagic primary production. Our measurements of benthic respiration account for 7-12% of the total in the German Bight, which is lower compared to earlier studies. Strong tidal and wind-forced currents along with the lack of complex three-dimensional biogenic structures seem to prevent settling of suspended matter and foster resuspension, thereby supporting pelagic turnover processes. Hence, we assume that benthic turnover might have been higher before systematic bottom trawling destroyed the bottom hydrobiological regime. Today, due to the strong current regime in the German Bight, the pelagic system appears to be a largely closed system of production and respiration, with comparably little for export to the benthic system due to absence of biogenic structures. References Callaway R, Engelhard GH, Dann J, Cotter J, Rumohr H (2007) One century of North Sea epibenthos and fishing: comparison between 1902-1912, 1982-1985 and 2000. Marine Ecology Progress Series 346, 27-43. Christiansen S (2009) Towards good environmental status - A network of marine protected areas for the North Sea. In: Lutter S (ed) WWF Germany, Fankfurt/Main Emeis K-C, van Beusekom J, Callies U, Ebinghaus R, Kannen A, Kraus G, Kröncke I, Lenhart H, Lorkowski I, Matthias V, Möllmann C, Pätsch J, Scharfe M, Thomas H, Weisse R, Zorita E (2015) The North Sea -A shelf sea in the Anthropocene. Journal of Marine Systems 141:18-33 Heip CHR, Goosen NK, Herman PMJ, Kromkamp J, Middelburg JJ, Soetaerd K (1995) Production and consumption of biological particles in temperate tidal estuaries. Oceanography and Marine Biology: an Annual Review 33:1-149 Kröncke I (2011) Changes in Dogger Bank macrofauna communities in the 20th century caused by fishing and climate. Estuarine, Coastal and Shelf Sciences 94 (3): 234-245. Neumann H, Diekmann R, Kröncke I (2016) The influence of habitat characteristics and fishing effort on functional composition of epifauna in the south-eastern North Sea. Estuarine, Coastal and Shelf Sciences 169: 182-194. Olsen OT (1883) The Piscatorial Atlas of the North Sea, English and St. George's Channels. Taylor and Francis, London Reiss H, Greenstreet S, Sieben K, Ehrich S, Piet G, Quirijns F, Robinson F, Wolff W, Kröncke I (2009) Effects of fishing disturbance on benthic communities and secondary production within an intensively fished area. Marine Ecology Progress Series 394:201-213

Methane seep events of the southern Joetsu Knoll since middle Pleistocene based on benthic foraminifera

NASA Astrophysics Data System (ADS)

Oi, T.; Akiba, F.; Matsumoto, R.; Kakuwa, Y.

2016-12-01

Gas hydrates were collected at several sites off Joetsu which presented anomalous seismic structures. "Gas chimneys", major host structures for shallow gas hydrates, were recognized ROV off Joetsu in eastern margin of the Japan Sea, as were a number of active methane seeps. The assemblage components and carbon isotope of benthic foraminifera, which are ubiquitous in global marine settings, can indicate methane seep environments (Akimoto et al., 1994; Bhaumik and Gupta, 2007). Preliminary work by Oi et al. (2015) documented the obvious occurrences of methane related foraminifera, Rutherfordoides sp., in three core sediments recovered from Umitaka Spur, west Oki Trough and north Mogami Trough in the eastern margin of the Japan Sea, and found them to comprise the early part of the MIS 2, calculated to 28-25ka. These records suggest that active methane seep events might occur at the same time during early MIS 2, but were confined within the last 100ka. In this study, we analyzed benthic foraminiferal fossils from drilling core J04RB (core length 122 m; one of the gas hydrate bearing sites at a southern part of the Joetsu Knoll) in order to document methane seep events during the last 500ka. Firstly, we estimated sedimentation ages from diatom biostratigraphy and identification of Aso-1 tephra. Based on diatom components, we recognized a boundary between NPD (Neogene North Pacific diatom Zonations) 12 and NPD11, estimated at 300 ka (MIS8/9; Yanagisawa and Akiba, 1998). The bottom age was estimated to almost 530-560 ka (around MIS14) especially from the alternation with warm and cold diatom zones (Akiba et al., 2014). Secondary, we could suppose the paleoenvironments from benthic foraminifera as below. 1. The rare benthic foraminifera during the cold stages (MIS8, MIS10, and MIS12) indicate anoxic bottom conditions characteristic of falling sea level, just as with MIS 2. 2. We recognized the continuous distributions of tiny methane related specimens of Rutherfordoides sp. during MIS10. In order to confirm new records of active methane seep events in the Joetsu Knoll, we need to measure isotope records of this species. This study was conducted under the commission from AIST as a part of the methane hydrate research project of METI (the Ministry of Economy, Trade and Industry, Japan).

Invasive symbiont bearing (and other) foraminifera altering the community structure of eastern Mediterranean rocky reefs environments

NASA Astrophysics Data System (ADS)

Hyams-Kaphzan, Orit; Perelis Grossowicz, Lydia; Almogi-Labin, Ahuva

2015-04-01

The rocky reefs of the Israeli eastern Mediterranean shelf constitute a highly diverse marine ecosystem rich in macroalgae and calcareous organisms. The benthic foraminiferal community living in this ecosystem is rapidly changing due to massive invasion of symbiont bearing foraminifera (SBF) as well as other foraminiferal species of tropical origin. This trend facilitated by the ongoing increase in temperature enables more tropical species to adjust to the eastern Mediterranean habitats. In order to document the status of the benthic foraminiferal community structure rocky reefs at Akhziv (AK) and Carmel Head (CH), northern Israel were sampled by scuba diving. Different macroalgae species, including invasive ones, accommodating the live epiphytic benthic foraminifera were sampled twice a year at AK and in each season at CH in three depth intervals between 5-20 m, during 2013-4. The numerical abundance of the group ranges between 170-3500 #/10cc (wet macroalgae volume) without any significant difference in standing stocks within regions, water depths or macroalgae preference. In total 77 benthic foraminiferal species were identified 71 in CH and only 43 at AK. Species richness per site varied between 3 and 42 with higher values at CH. 25% of all species were aliens, mostly Lessepsian, that comprise on average 70% - 84% of the numerical abundance of AK and CH respectively. Cluster analysis using benthic foraminifera relative abundance data did not correlate with the different macroalgae species, water depths or seasonality, indicating that the foraminiferal community in the two regions is quite homogenous. Amphistegina lobifera a Lessepsian migrant is by far the most common species on the Israeli rocky reefs occurring in all samples and comprising 18-93% of the foraminiferal community. Heterostegina depressa behaves similarly to A. lobifera though it occurs in lower numbers. Pararotalia calcariformata, a recently arriving SBF occupies mainly shallow water sites at CH, with maximum of 63%, replacing apparently A. lobifera. Peneroplis planatus and P. pertusus occur in low numbers mainly at AK sites. Sorites orbiculus, another Lesspsian SBF recently found alive on pebbles at 0.2 m off Shikmona is quite rare in our material comprising ≤2% at CH and ≤1% at AK. This study indicates that the Israeli rocky reefs represent a dynamic ecosystem prone to rapid changes that did not reach yet equilibrium.

Testing the effect of increased temperature and river water input on benthic and pelagic metabolism using a large scale experimental pond ecosystem

NASA Astrophysics Data System (ADS)

Rodriguez, Patricia; Geibrink, Erik; Vasconcelos, Francisco; Hedström, Per; Byström, Pär; Karlsson, Jan

2013-04-01

We performed a large scale experimental study to test the effect of increased temperatures and concentration of allochthonous dissolved organic carbon (DOC) on benthic and pelagic primary production and respiration. The experiment was carried out during one ice-free season (May-October 2012) in a clear-water pond ecosystem divided into 16 enclosures (each 120 m3 and 1.6 m deep) including natural benthic and pelagic habitats and fish as top consumers (40 adult three-spine sticklebacks were introduced at the beginning of the experiment). Treatments included input of brown river water (23 mg/L in DOC) and heating (3° C above ambient temperature) in a factorial design: 4 enclosures were kept as controls (clear-cold), 4 enclosures were heated (clear-hot), 4 received river water (dark-cold) and 4 were both heated and received river water (dark-hot). Physical and chemical variables were monitored weekly meanwhile benthic, pelagic and ecosystems metabolism were estimated from free-water oxygen data and incubation studies. The 3° C difference in temperature between hot and cold enclosures was consistent during the study and DOC concentrations averaged 4 and 8 mg/L in clear water and dark enclosures, respectively; without any interaction effect between temperature and DOC concentration. Vertical light attenuation coefficient (Kd) showed significant differences between treatments with (0.62±0.40 m-1) and without river water (0.24±0.13 m-1). Total nitrogen concentrations ranged between 187 and 300 μg/L, with higher values in the dark-cold enclosures. The same pattern of higher values in dark-cold enclosures was found in phytoplankton chlorophyll a and primary production. Preliminary results show that gross benthic primary production (higher in clear-cold enclosures) largely exceeded phytoplankton production at the beginning of the experiment. Due to high respiration compared to gross primary production the net ecosystem production was in general negative in the pelagic habitat and did not show any effect of temperature or river water treatment. Our results suggest that input of river water may affect relatively shallow lake ecosystems differently compared to what is generally assumed based on studies of deeper systems.

Integrated stratigraphy of a shallow marine Paleocene-Eocene boundary section, MCBR cores, Maryland (USA)

NASA Astrophysics Data System (ADS)

Self-Trail, J. M.; Robinson, M. M.; Edwards, L. E.; Powars, D. S.; Wandless, G. A.; Willard, D. A.

2013-12-01

An exceptional Paleocene-Eocene boundary section occurs in a cluster of six short (<15m) coreholes (MCBR 1 through 6) drilled near Mattawoman Creek in western Charles County, Maryland. The sediments consist of glauconite-rich sand of the upper Paleocene Aquia Formation and silty clay of the lower Eocene Marlboro Clay. Sediment samples were analyzed for carbon and oxygen isotopes, percent calcium carbonate, calcareous nannofossils, planktic and benthic foraminifera, dinoflagellates, pollen, and lithology. A well-defined carbon isotope excursion (CIE) documents a gradual negative shift in δ13C values that starts below the lithologic break between the Aquia Formation and the Marlboro Clay. A benthic foraminifer extinction event, reduction of calcareous nannofossil assemblages, and change in core color from gray to alternating gray and pink also occurs within the CIE transition. These alternating changes in color coincide with cyclic peaks in the carbon isotope and percent calcium carbonate curves, where gray color corresponds to a positive shift in carbon isotope values and to a corresponding increase in percent benthic and planktic foraminifera. The upper third of the Marlboro Clay is barren of all calcareous microfossil material, although the presence of foraminiferal molds and linings proves that deposition occurred in a marine environment. Co-occurrence of the dinoflagellates Apectodinium augustum and Phthanoperidinium crenulatum at the top of the Marlboro Clay suggests that the Marlboro Clay at Mattawoman Creek is truncated. This is corroborated by the absence in the Marlboro of specimens of the calcareous nannofossil Rhomboaster-Discoaster assemblage, which is restricted to early Eocene Zone NP9b. Based on planktic/benthic foraminifera ratios, deposition of sediments at Mattawoman Creek occurred predominantly in an inner neritic environment, at water depths between 25-50 m. Occasional deepening to approximately 75m (middle neritic environment) occurred in the early Eocene, as represented by the basal Marlboro Clay. The planktic/benthic ratio, however, could also be affected by surface productivity and/or river runoff. The gradual shift up-section in core color from gray to alternating gray and red, to dark red, coupled with dissolution of calcareous microfossil assemblages, is possibly secondary and may represent lysocline shoaling in a nearshore environment. This would suggest that lysocline shoaling continued after the CIE and well into the early Eocene.

Distribution of benthic foraminifers (>125 um) in the surface sediments of the Arctic Ocean

USGS Publications Warehouse

Osterman, Lisa E.; Poore, Richard Z.; Foley, Kevin M.

1999-01-01

Census data on benthic foraminifers (>125 ?m) in surface sediment samples from 49 box cores are used to define four depth-controlled biofacies, which will aid in the paleoceanographic reconstruction of the Arctic Ocean. The shelf biofacies contains a mix of shallow-water calcareous and agglutinated species from the continental shelves of the Beaufort and Chukchi Seas and reflects the variable sedimentologic and oceanic conditions of the Arctic shelves. The intermediate-depth calcareous biofacies, found between 500 and 1,100 meters water depth (mwd), contains abundant Cassidulina teretis , presumably indicating the influence of Atlantic-derived water at this depth. In water depths between 1,100 and 3,500 m, a deepwater calcareous biofacies contains abundant Oridorsalis umbonatus . Below 3,500 mwd, the deepwater mixed calcareous/agglutinated biofacies of the Canada, Makarov, and Eurasian Basins reflects a combination of low productivity, dissolution, and sediment transport. Two other benthic foraminiferal species show specific environmental preferences. Fontbotia wuellerstorfi has a depth distribution between 900 and 3,500 mwd, but maximum abundance occurs in the region of the Mendeleyev Ridge. The elevated abundance of F. wuellerstorfi may be related to increased food supply carried by a branch of Atlantic water that crosses the Lomonosov Ridge near the Russian Continental Shelf. Triloculina frigida is recognized to be a species preferring lower slope sediments commonly disturbed by turbidites and bottom currents. INTRODUCTION At present, our understanding of the Arctic Ocean lags behind our understanding of other oceans, and fundamental questions still exist about its role in and response to global climate change. The Arctic Ocean is particularly sensitive to climatic fluctuations because small changes in the amounts of sea-ice cover can alter global albedo and thermohaline circulation (Aagaard and Carmack, 1994). Numerous questions still exist regarding the nature and timing of paleoclimatic events in the Arctic Ocean. In order to attempt to answer some of these questions, baseline studies are imperative. This report discusses the distribution of benthic foraminifers in surface sediment samples from 49 box cores (figs. 1 and 2, table 1) collected by the U.S. Geological Survey (USGS) with the assistance of the U.S. Coast Guard (USCG). A modern data set of benthic foraminiferal distribution is necessary for interpreting the paleoclimatic and oceanographic history of the Arctic Ocean.

The truth is out there: measured, calculated and modelled benthic fluxes.

NASA Astrophysics Data System (ADS)

Pakhomova, Svetlana; Protsenko, Elizaveta

2016-04-01

In a modern Earth science there is a great importance of understanding the processes, forming the benthic fluxes as one of element sources or sinks to or from the water body, which affects the elements balance in the water system. There are several ways to assess benthic fluxes and here we try to compare the results obtained by chamber experiments, calculated from porewater distributions and simulated with model. Benthic fluxes of dissolved elements (oxygen, nitrogen species, phosphate, silicate, alkalinity, iron and manganese species) were studied in the Baltic and Black Seas from 2000 to 2005. Fluxes were measured in situ using chamber incubations (Jch) and at the same time sediment cores were collected to assess the porewater distribution at different depths to calculate diffusive fluxes (Jpw). Model study was carried out with benthic-pelagic biogeochemical model BROM (O-N-P-Si-C-S-Mn-Fe redox model). It was applied to simulate biogeochemical structure of the water column and upper sediment and to assess the vertical fluxes (Jmd). By the behaviour at the water-sediment interface all studied elements can be divided into three groups: (1) elements which benthic fluxes are determined by the concentrations gradient only (Si, Mn), (2) elements which fluxes depend on redox conditions in the bottom water (Fe, PO4, NH4), and (3) elements which fluxes are strongly connected with organic matter fate (O2, Alk, NH4). For the first group it was found that measured fluxes are always higher than calculated diffusive fluxes (1.5

Cenozoic climate changes: A review based on time series analysis of marine benthic δ18O records

NASA Astrophysics Data System (ADS)

Mudelsee, Manfred; Bickert, Torsten; Lear, Caroline H.; Lohmann, Gerrit

2014-09-01

The climate during the Cenozoic era changed in several steps from ice-free poles and warm conditions to ice-covered poles and cold conditions. Since the 1950s, a body of information on ice volume and temperature changes has been built up predominantly on the basis of measurements of the oxygen isotopic composition of shells of benthic foraminifera collected from marine sediment cores. The statistical methodology of time series analysis has also evolved, allowing more information to be extracted from these records. Here we provide a comprehensive view of Cenozoic climate evolution by means of a coherent and systematic application of time series analytical tools to each record from a compilation spanning the interval from 4 to 61 Myr ago. We quantitatively describe several prominent features of the oxygen isotope record, taking into account the various sources of uncertainty (including measurement, proxy noise, and dating errors). The estimated transition times and amplitudes allow us to assess causal climatological-tectonic influences on the following known features of the Cenozoic oxygen isotopic record: Paleocene-Eocene Thermal Maximum, Eocene-Oligocene Transition, Oligocene-Miocene Boundary, and the Middle Miocene Climate Optimum. We further describe and causally interpret the following features: Paleocene-Eocene warming trend, the two-step, long-term Eocene cooling, and the changes within the most recent interval (Miocene-Pliocene). We review the scope and methods of constructing Cenozoic stacks of benthic oxygen isotope records and present two new latitudinal stacks, which capture besides global ice volume also bottom water temperatures at low (less than 30°) and high latitudes. This review concludes with an identification of future directions for data collection, statistical method development, and climate modeling.

Effects of artificial settlement plate materials and methods of deployment on the sessile epibenthic community development in a tropical environment

NASA Astrophysics Data System (ADS)

Field, S. N.; Glassom, D.; Bythell, J.

2007-06-01

The choice of substrata and the methods of deployment in analyses of settlement in benthic communities are often driven by the cost of materials and their local availability, and comparisons are often made between studies using different methodologies. The effects of varying artificial substratum, size of replicates and method of deployment were determined on a shallow reef in Eilat, Israel, while the effect of size of replicates was also investigated on a shallow reef in Sharm El Sheikh, Egypt. When statistical power was high enough, that is, when sufficient numbers of settlers were recorded, significant differences were found between materials used, tile size and methods of deployment. Significant differences were detected in total coral settlement rates and for the two dominant taxonomic groups, acroporids and pocilloporids. Standardisation of tile materials, dimensions, and method of deployment is needed for comparison between coral and other epibiont settlement studies. However, a greater understanding of the effects of these experimental variables on settlement processes may enable retrospective comparisons between studies utilising a range of materials and methods.

Interspecific Relationships in Benthic Assemblages of a Large Lowland River : Co-existence or Competition as a Result of Habitat Characteristics

NASA Astrophysics Data System (ADS)

Akopian, M.; Usseglio-Polatera, P.

2005-05-01

Macrobenthic assemblages of the lower, regulated and canalized Marne River (France) are dominated by several "exotic", recently introduced species. Arrival, installation and spread of such alien species were certainly promoted by (1) the close connection between French and other European river systems (Rhine, Danube), (2) the modification of natural river flow and benthic habitats. Both habitat characteristics (e.g. granulometric composition, organic content) and corresponding benthic assemblage structure were analysed to identify the substrate affinity of major taxa in the lower Marne River. The main aim of the study was to evaluate the possible biotic interactions (i.e. competition for food and/or space) among dominant taxa as function of habitat features and to predict the future development of newly established species, already known as potential invaders: Corbicula fluminea (Bivalvia), Hypania invalida (Polychaeta), Chelicorophium curvispinum (Amphipoda), etc. Most of the newly established species, coming from the same biogeographical area ("invasional meltdown" hypothesis?), are eurytopic, with high fecundity and large food spectrum. First results demonstrated the co-existence of such species in the Marne River. But the future ecological importance of these organisms in benthic assemblages of the river depends on their present population size, population dynamics, and ability to colonize bottom substrates.

ASSOCIATION AMONG INVERTEBRATES AND HABITAT INDICATORS FOR LARGE RIVERS IN THE MIDWEST

EPA Science Inventory

Six reaches in each of two large rivers (one each in Kentucky and Ohio) were sampled using a prototype benthic macroinvertebrate sampling technique. The intent was to better understand the relationship between large river macroinvertebrate assemblages and habitat features. This...

Exchange of nitrogen and phosphorus between a shallow lagoon and coastal waters

USGS Publications Warehouse

Hayn, Melanie; Howarth, Robert W.; Ganju, Neil K.; Berg, Peter; Foreman, Kenneth H.; Giblin, Anne E.; McGlathery, Karen

2014-01-01

West Falmouth Harbor, a shallow lagoon on Cape Cod, has experienced a threefold increase in nitrogen load since the mid- to late 1990s due to input from a groundwater plume contaminated by a municipal wastewater treatment plant. We measured the exchange of nitrogen and phosphorus between the harbor and the coastal waters of Buzzards Bay over several years when the harbor was experiencing this elevated nitrogen load. During summer months, the harbor not only retained the entire watershed nitrogen load but also had a net import of nitrogen from Buzzards Bay. During the spring and fall, the harbor had a net export of nitrogen to Buzzards Bay. We did not measure the export in winter, but assuming the winter net export was less than 112 % of the load, the harbor exported less than half of the watershed nitrogen load on an annual basis. For phosphorus, the harbor had a net import from coastal waters in the spring and summer months and a net export in the fall. Despite the large increase in nitrogen load to the harbor, the summertime import of phosphorus from Buzzards Bay was sufficient to maintain nitrogen limitation of primary productivity during the summer. Our findings illustrate that shallow systems dominated by benthic producers have the potential to retain large terrestrial nitrogen loads when there is sufficient supply of phosphorus from exchange with coastal waters.

Spatio-temporal biodiversity of soft bottom macrofaunal assemblages in shallow coastal waters exposed to episodic hypoxic events.

PubMed

Veas, Rodrigo; Hernández-Miranda, Eduardo; Quiñones, Renato A; Carrasco, Franklin D

2012-07-01

The Humboldt Current System (HCS) has one of the three most important oxygen minimum zones (OMZ) of the global ocean. Several studies have looked at the macrofaunal benthic assemblages inhabiting the continental shelf and shallow bays off central-southern Chile associated with low oxygen areas, but little is known about open coast macrofaunal communities within this zone, which are frequently subjected to the low oxygen conditions of Equatorial Subsurface Waters (ESSW). In order to assess local and mesoscale coastal macrofauna dynamics, the sampling area (ca. 40 linear km) was divided into seven local zones (Cobquecura, southern Cobquecura, northern Itata, Itata River mouth, external, southern Itata, and Coliumo). Eight oceanographic cruises were carried out between May 2006 and February 2008 covering 16 coastal sampling sites, between 36°07'S and 36°30'S. The macrofaunal assemblage was dominated by polychaetes, crustaceans, and mollusks. Our results suggest a high degree of temporal faunal stability on the mesoscale in soft bottom communities along the open coast, given the persistence of a faunal assemblage dominated by organisms tolerant of low oxygen conditions. While there is some local variability in community attributes, the main structuring factor for soft bottom communities in the shallow coastal area off central-southern Chile is the seasonal intrusion of low oxygen ESSW. Copyright © 2012 Elsevier Ltd. All rights reserved.

Light Limitation within Southern New Zealand Kelp Forest Communities

PubMed Central

Desmond, Matthew J.; Pritchard, Daniel W.; Hepburn, Christopher D.

2015-01-01

Light is the fundamental driver of primary productivity in the marine environment. Reduced light availability has the potential to alter the distribution, community composition, and productivity of key benthic primary producers, potentially reducing habitat and energy provision to coastal food webs. We compared the underwater light environment of macroalgal dominated shallow subtidal rocky reef habitats on a coastline modified by human activities with a coastline of forested catchments. Key metrics describing the availability of photosynthetically active radiation (PAR) were determined over 295 days and were related to macroalgal depth distribution, community composition, and standing biomass patterns, which were recorded seasonally. Light attenuation was more than twice as high in shallow subtidal zones along the modified coast. Macroalgal biomass was 2–5 times greater within forested sites, and even in shallow water (2m) a significant difference in biomass was observed. Long-term light dose provided the best explanation for differences in observed biomass between modified and forested coasts, with light availability over the study period differing by 60 and 90 mol photons m−2 at 2 and 10 metres, respectively. Higher biomass on the forested coast was driven by the presence of larger individuals rather than species diversity or density. This study suggests that commonly used metrics such as species diversity and density are not as sensitive as direct measures of biomass when detecting the effects of light limitation within macroalgal communities. PMID:25902185

Metabolic rates are significantly lower in abyssal Holothuroidea than in shallow-water Holothuroidea

PubMed Central

van Oevelen, Dick

2018-01-01

Recent analyses of metabolic rates in fishes, echinoderms, crustaceans and cephalopods have concluded that bathymetric declines in temperature- and mass-normalized metabolic rate do not result from resource-limitation (e.g. oxygen or food/chemical energy), decreasing temperature or increasing hydrostatic pressure. Instead, based on contrasting bathymetric patterns reported in the metabolic rates of visual and non-visual taxa, declining metabolic rate with depth is proposed to result from relaxation of selection for high locomotory capacity in visual predators as light diminishes. Here, we present metabolic rates of Holothuroidea, a non-visual benthic and benthopelagic echinoderm class, determined in situ at abyssal depths (greater than 4000 m depth). Mean temperature- and mass-normalized metabolic rate did not differ significantly between shallow-water (less than 200 m depth) and bathyal (200–4000 m depth) holothurians, but was significantly lower in abyssal (greater than 4000 m depth) holothurians than in shallow-water holothurians. These results support the dominance of the visual interactions hypothesis at bathyal depths, but indicate that ecological or evolutionary pressures other than biotic visual interactions contribute to bathymetric variation in holothurian metabolic rates. Multiple nonlinear regression assuming power or exponential models indicates that in situ hydrostatic pressure and/or food/chemical energy availability are responsible for variation in holothurian metabolic rates. Consequently, these results have implications for modelling deep-sea energetics and processes. PMID:29892403

Grazing trails formed by soldier fly larvae (Diptera: Stratiomyidae) and their paleoenvironmental and paleoecological implications for the fossil record

USGS Publications Warehouse

Mángano, M. Gabriela; Buatois, Luis A.; Claps, Guillermo L.

1996-01-01

Recent trails formed by soldier fly larvae (Díptera: Stratiomyidae) were examined in a shallow pond in the floodplain of a braided river in Jujuy Province, northwestern Argentina. Collected specimens were identified as Stratiomys convexa van der Wulp. Simple, irregularly meandering trails were produced across the surface of a muddy‐silty substrate. Since soldier fly larvae extend their caudal respiratory tube to the water‐air interface, they are restricted to extremely shallow water. The presence of benthic algal remains within the mouthparts of the larvae suggests a feeding habit of algal grazing. If preserved, these trails would be included in the ichno‐genus Helminthopsis, a common element in ancient freshwater ichno‐faunas. Helminthopsis preserved in pond and lacustrine margin deposits younger than Late Jurassic is regarded as one possible trace fossil analogue of the trails documented herein. Additionally, it is suggested that larvae of many aquatic Diptera with similar ecologic restrictions are potential tracemakers of Helminthopsis and other simple trails in these environments, particularly in post‐Paleozoic deposits. Studies of modern shallow aquatic habitats and reex‐amination of the ichnologic record stress the importance of fly larvae as tracemakers in lake margin and pond ecosystems. Ecologic requirements of soldier fly larvae make them inappropriate analogues of Helminthopsis tracemakers in deeper water, lacustrine settings.

Blob-level active-passive data fusion for Benthic classification

NASA Astrophysics Data System (ADS)

Park, Joong Yong; Kalluri, Hemanth; Mathur, Abhinav; Ramnath, Vinod; Kim, Minsu; Aitken, Jennifer; Tuell, Grady

2012-06-01

We extend the data fusion pixel level to the more semantically meaningful blob level, using the mean-shift algorithm to form labeled blobs having high similarity in the feature domain, and connectivity in the spatial domain. We have also developed Bhattacharyya Distance (BD) and rule-based classifiers, and have implemented these higher-level data fusion algorithms into the CZMIL Data Processing System. Applying these new algorithms to recent SHOALS and CASI data at Plymouth Harbor, Massachusetts, we achieved improved benthic classification accuracies over those produced with either single sensor, or pixel-level fusion strategies. These results appear to validate the hypothesis that classification accuracy may be generally improved by adopting higher spatial and semantic levels of fusion.

Sediment characteristics and provenance of the Taiwan Shoal in the southern Taiwan Strait

NASA Astrophysics Data System (ADS)

Koo, W. S.; Lin, A. T.; Kuo, L. W.; Lee, Y. H.

2016-12-01

The Taiwan Shoal in the southern Taiwan Strait exhibits a lobe-shaped shallow water area, with a depth less than around 40 m and an area approximately of 13,000 km2. The Shoal consists of relict sediments remnant from deltaic deposits during the last glacial period and associated with the paleo-Min River. We collected seafloor sediments in and around the Taiwan Shoal to study the sediment characteristics and provenance of the Shoal as well as Taiwanese river sediments to characterize sediment sourced from southern Taiwan. Our results help to understand possible sediment delivery pathways in a source-to-sink context from the southern Taiwan Strait to the northern South China Sea. The method of X-ray diffraction is used to identify mineral compositions for muds and mineral compositions are examined under polarized microscope for sands. Zircon grains are separated from heavy minerals for U-Pb dating in order to understand the sediment source terranes. Sediments of the Taiwan Shoal are mostly tawny-colored, medium to coarse-grained sands with abundant shell fragments and shallow-water benthic foraminifera. Sediments to the south of the Taiwan Shoal and in the outer shelf consist of dark brown-colored and fine-grained sands with rare shell fragments. Siliciclastic compositions of the Taiwan Shoal sediments are mostly quartz. The second abundant composition is rock fragments with more occurrences near the Chinese coastline and the Penghu archipelago. Slate fragments are found to occur near Taiwan, especially in the Penghu Channel area. Clay minerals from the Penghu Channels and south of the Taiwan Shoal are dominated by illite and chlorite with minor smectite and kaolinite. The sediment colors and mineral species are very different for the sediments of the Taiwan Shoal and outer shelf, revealing that these two areas featuring different oceanographic processes and sediment provenance.

Utility of shallow-water ATRIS images in defining biogeologic processes and self-similarity in skeletal scleractinia, Florida reefs

USGS Publications Warehouse

Lidz, B.H.; Brock, J.C.; Nagle, D.B.

2008-01-01

A recently developed remote-sensing instrument acquires high-quality digital photographs in shallow-marine settings within water depths of 15 m. The technology, known as the Along-Track Reef-Imaging System, provides remarkably clear, georeferenced imagery that allows visual interpretation of benthic class (substrates, organisms) for mapping coral reef habitats, as intended. Unforeseen, however, are functions new to the initial technologic purpose: interpr??table evidence for real-time biogeologic processes and for perception of scaled-up skeletal self-similarity of scleractinian microstructure. Florida reef sea trials lacked the grid structure required to map contiguous habitat and submarine topography. Thus, only general observations could be made relative to times and sites of imagery. Degradation of corals was nearly universal; absence of reef fish was profound. However, ???1% of more than 23,600 sea-trial images examined provided visual evidence for local environs and processes. Clarity in many images was so exceptional that small tracks left by organisms traversing fine-grained carbonate sand were visible. Other images revealed a compelling sense, not yet fully understood, of the microscopic wall structure characteristic of scleractinian corals. Conclusions drawn from classifiable images are that demersal marine animals, where imaged, are oblivious to the equipment and that the technology has strong capabilities beyond mapping habitat. Imagery acquired along predetermined transects that cross a variety of geomorphic features within depth limits will ( 1) facilitate construction of accurate contour maps of habitat and bathymetry without need for ground-truthing, (2) contain a strong geologic component of interpreted real-time processes as they relate to imaged topography and regional geomorphology, and (3) allow cost-effective monitoring of regional- and local-scale changes in an ecosystem by use of existing-image global-positioning system coordinates to re-image areas. Details revealed in the modern setting have taphonomic implications for what is often found in the geologic record.

Influence of pycnocline topography and water-column structure on marine distributions of alcids (Aves: Alcidae) in Anadyr Strait, Northern Bering Sea, Alaska

USGS Publications Warehouse

Haney, J. Christopher

1991-01-01

Systematic ship-board surveys were used to simultaneously record seabird abundances and resolve coarse-scale (3 to 10 km) horizontal and fine-scale (1 to 10 m) vertical variability in water-column structure and bathymetry for portions of the coastal zone in Anadyr Strait near western St. Lawrence Island, northern Bering Sea, Alaska, during August and September 1987. Three plankton-feeding alcids, parakeet (Cyclorrhynchus psittacula), crested (Aethia cristatella) and least (A. pusilla) auklets, each exhibited distinct associations for different pycnocline characteristics. Least auklets were more abundant in mixed water, but they also occurred within stratified water where the pycnocline and upper-mixed layer were shallow (≤8 m) and thin (≤10 m), respectively. Low body mass (85 g), high buoyancy, and relatively poor diving ability may have restricted this auklet to areas where water-column strata nearly intersected the surface, or to areas from which strata were absent altogether due to strong vertical mixing. Parakeet and crested auklets, which are larger-bodied (ca. 260 g) planktivores with presumably greater diving ability, were more abundant in stratified water, and both species exhibited less specific affinities for water-column characteristic at intermediate and shallow levels. All three auklets avoided locations with strong pycnocline gradients (≤0.22σtm−1), a crude index of the strong, subsurface shear in water velocities characteristic of this region. Auklet distributions in Anadyr Strait were consistent with: (1) strata accessibility, as estimated from relationships between body mass and relative diving ability, (2) possible avoidance of strong subsurface water motions, and (3) habits and distributions of plankton prey. In contrast, largebodied (>450 g) alcids [i.e., common (Uria aalge) and thick-billed (U. lomvia) murres, pigeon guillemots (Cephus columba), tufted (Fratercula cirrhata), and horned (F. corniculata) puffins feeding on fish or benthic invertebrates] showed no consistent relationships with either the pycnocline or upper-mixed layers. All large alcids were more common in stratified than in vertically-mixed waters, but differences in abundance between mixing regimes were small or equivocal. The only measured variable with which all large alcids were associated was total water-column depth: murres, guillemots, and puffins each used areas with shallow sea floors and avoided areas with deeper sea floors. Failure of large alcids to discriminate among foraging areas in Anadyr Strait as a function of pycnocline topography and strength may be attributable to: (1) greater reliance on large pelagic and benthic prey not associated with the pycnocline; (2) higher body mass, lower buoyancy, and greater diving ability; (3) foraging over a uniquely shallow continental shelf where all vertical strata, including the sea floor, are potentially accessible from the ocean surface.

An endemic post-CTB Pseudorhapydionina (foraminifera) from the Pyrenean palaeobioprovince

NASA Astrophysics Data System (ADS)

Consorti, Lorenzo; Caus, Esmeralda

2015-04-01

The genus Pseudorhapydionina and its allies are porcelaneous ranging from cylindrical to fan-shaped larger benthic foraminifera (LBF), with planispiral-involute chamber arrangement becoming uncoiled or flabelliform-to-cyclical in adult stages. The apertural face has pierced by multiple cribate openings. The marginal chamber lumen is partially subdivided by subepidermal plates, while the central area might or might not present pillars. They characterise latest Albian?-Cenomanian (Middle Cretaceous Global Community Maturation Cycle) shallow-water carbonate deposits from Mexico (Caribbean LBF palaeobioprovince) to the Iberian Peninsula, Italy, Greece, Middle East and North of Africa (western, central and eastern Tethyan LBF palaeobioprovinces, respectively), but they have never been found in the Pyrenean palaeobioprovince. It is widely accepted that pseudorhapydioninids and other groups of larger benthic foraminifera, such as alveolinids, with an extreme or moderate K-strategy of life disappear near the Cenomanian-Turonian boundary (CTB), when a major extinction took place in both shallow and deep marine realms. However, it seems that some Cenomanian genera, such as Cyclolina, Cyclopsinella, Dicyclina, Cuneolina, and Rotorbinella, escaped from the extinction during the CTB oceanic anoxic event (OAE2 or Bonarelli Event), but more detailed studies are needed to confirm if taxa at both sides of the boundary are actually related. New studies in the South-central Pyrenees have shown the occurrence of Pseudorhapydionina morphotypes in the shallow-water deposits of the uppermost part of the La Cova limestone, which age constrained by strontium isotope stratigraphy (SIS) is lower Santonian (Late Cretaceous GCMC). These pseudorhapydioninid morphotypes co-occur in the levels containing Martiguesia cyclamminiformis, Ramirezella montsechiensis, Lacazina pyrenaica, Pseudolacazina loeblichii, Palandroxina taxyae, Hellenalveolina tappanae, Iberorotalia reicheli, Calcarinella schaubi and Orbitokathina vonderschmitti, among others. All of this fauna that seems restricted to the Pyrenean palaeobioprovince are late Cretaceous GCMC newcomers. Thus, the presence of such morphotype in the deposits of the Late Cretaceous GCMC of the Pyrenean palaeobioprovincie arises the followings questions: is the Pyrenean taxon a CTB survivor? Or, are we faced with a morphological convergence? Positive answering to the first question would implicate that Pseudorhapydionina could have successfully migrated from the western Tethyan (Iberian Basin) to the Pyrenean Basin before the communication was stopped, without reaching an appropriate colonizing area, probably due to the different oceanographic conditions. But, the change of those conditions during the late Coniacian- early Santonian times, as it is demonstrated by the abundance of symbiont-bearing LBF taxa, had favored the installation of Pseudorhapydionina in the Santonian shallow-water environments. The hypothesis of a morphological convergence could be explained by the quite simple architecture of the present taxon. Notwithstanding, following the actual taxonomical classification in foraminifera, the presence of radial septula, which does not alternate with the intercameral foramina, and the absence of pillars definitively ascribed our specimens to the genus Pseudorhapydionina.

Development of Miocene-Pliocene reef trend, St. Croix, U. S. Virgin Islands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gill, I.; Eby, D.E.; Hubbard, D.K.

1988-01-01

The Miocene-Pliocene reef trend on St. Croix, U.S. Virgin Islands, rims the present southern western coasts of the island and includes accompanying lagoonal and forereef facies. The reef trend was established on a foram-algal bank facies that represents basinal shallowing from the deep-water pelagic and hemipelagic facies of the Miocene Kingshill Limestone. Information on facies distribution and thickness is derived from rock exposures and 22 test wells drilled to a maximum depth of 91 m. The greatest thickness of the reef facies exists in a subsidiary graben on the south coast of St. Croix. The thickness of the reef sectionmore » in this locality is due to preservation of the section in a downdropped block. Reef faunas include extant corals, as well as several extinct genera. Extant corals (e.g. Montastrea annularis, Diploria sp., and Porites porites) and extinct corals (e.g., Stylophora affinis, Antillea bilobata, and Thysanus sp.) are the main reef frame-builders. Coralline algea and large benthic foraminifera are significant contributors to the sediments both prior to and during scleractinian reef growth. Dolomitization and calcite cementation occur prominantly in an area corresponding to a Holocene lagoon. The spatial distribution of the dolomite suggests that the lagoon is a Tertiary feature directly related to the dolomitization process. Stable isotopic values suggest dolomitization of fluids of elevated salinity.« less

Spatially explicit feedbacks between seagrass meadow structure, sediment and light: Habitat suitability for seagrass growth

USGS Publications Warehouse

Carr, Joel; D'Odorico, Paul; McGlathery, Karen; Wiberg, Patricia L.

2016-01-01

In shallow coastal bays where nutrient loading and riverine inputs are low, turbidity, and the consequent light environment are controlled by resuspension of bed sediments due to wind-waves and tidal currents. High sediment resuspension and low light environments can limit benthic primary productivity; however, both currents and waves are affected by the presence of benthic plants such as seagrass. This feedback between the presence of benthic primary producers such as seagrass and the consequent light environment has been predicted to induce bistable dynamics locally. However, these vegetated areas influence a larger area than they footprint, including a barren adjacent downstream area which exhibits reduced shear stresses. Here we explore through modeling how the patchy structure of seagrass meadows on a landscape may affect sediment resuspension and the consequent light environment due to the presence of this sheltered region. Heterogeneous vegetation covers comprising a mosaic of randomly distributed patches were generated to investigate the effect of patch modified hydrodynamics. Actual cover of vegetation on the landscape was used to facilitate comparisons across landscape realizations. Hourly wave and current shear stresses on the landscape along with suspended sediment concentration and light attenuation characteristics were then calculated and spatially averaged to examine how actual cover and mean water depth affect the bulk sediment and light environment. The results indicate that an effective cover, which incorporates the sheltering area, has important controls on the distributions of shear stress, suspended sediment, light environment, and consequent seagrass habitat suitability. Interestingly, an optimal habitat occurs within a depth range where, if actual cover is reduced past some threshold, the bulk light environment would no longer favor seagrass growth.

Contrasts in Arctic shelf sea-ice regimes and some implications: Beaufort Sea versus Laptev Sea

USGS Publications Warehouse

Reimnitz, E.; Dethleff, D.; Nurnberg, D.

1994-01-01

The winter ice-regime of the 500 km) from the mainland than in the Beaufort Sea. As a result, the annual freeze-up does not incorporate old, deep-draft ice, and with a lack of compression, such deep-draft ice is not generated in situ, as on the Beaufort Sea shelf. The Laptev Sea has as much as 1000 km of fetch at the end of summer, when freezing storms move in and large (6 m) waves can form. Also, for the first three winter months, the polynya lies inshore at a water depth of only 10 m. Turbulence and freezing are excellent conditions for sediment entrainment by frazil and anchor ice, when compared to conditions in the short-fetched Beaufort Sea. We expect entrainment to occur yearly. Different from the intensely ice-gouged Beaufort Sea shelf, hydraulic bedforms probably dominate in the Laptev Sea. Corresponding with the large volume of ice produced, more dense water is generated in the Laptev Sea, possibly accompanied by downslope sediment transport. Thermohaline convection at the midshelf polynya, together with the reduced rate of bottom disruption by ice keels, may enhance benthic productivity and permit establishment of open-shelf benthic communities which in the Beaufort Sea can thrive only in the protection of barrier islands. Indirect evidence for high benthic productivity is found in the presence of walrus, who also require year-round open water. By contrast, lack of a suitable environment restricts walrus from the Beaufort Sea, although over 700 km farther to the south. We could speculate on other consequences of the different ice regimes in the Beaufort and Laptev Seas, but these few examples serve to point out the dangers of exptrapolating from knowledge gained in the North American Arctic to other shallow Arctic shelf settings. ?? 1994.

Impacts of environmental and anthropogenic stresses on macrozoobenthic communities in Jinhae Bay, Korea.

PubMed

Bae, Hanna; Lee, Jung-Ho; Song, Sung Joon; Park, Jinsoon; Kwon, Bong-Oh; Hong, Seongjin; Ryu, Jongseong; Choi, Kyungsik; Khim, Jong Seong

2017-03-01

In this study, spatiotemporal dynamics of macrofaunal assemblages and their associations with environmental conditions were examined in Jinhae Bay (10 sites), where the obvious sources of pollution including industries, oyster farms (hanging cultures), and municipal discharges has surrounded. The survey had performed over five consecutive seasons in 2013-2014. Target sedimentary variables included grain size, organic content, C/N ratio, carbon and nitrogen stable isotope ratios, and some heavy metals. Five ecological quality indices (EcoQ) were calculated from the benthic community data to evaluate ecological qualities in site-specific manner. Jinhae Bay is a shallow (depths range, 11-24 m) and typical semi-enclosed bay. The benthic environments represented mud dominated bottoms (>70%) with fairly substantial organic content levels (>2%) over all five seasons. Seasonal patterns were observed with peak abundances in the spring and distinctive macrozoobenthos species shifts in the summer. The spring bloom could be explained by drastic increases of some polychaetes, mainly Capitella sp., at certain site, particularly near the shore. The oyster farms situated in the innermost locations seem to provide organic-rich bottoms being dominated by opportunistic species and/or organic pollution indicator species, such as Lumbrineris longifolia, Capitella sp., and Paraprionospio patiens. In general, the EcoQ indicators indicated that Jinhae Bay was moderately polluted, with exceptionally poor EcoQ in a few locations during the specific season(s). Overall, adverse effects on benthic community was broadly attributable to contaminations of heavy metals and nearby aquatic farm activities in Jinhae Bay, which requires a prompt action toward ecosystem-based management practice in the given area. Copyright © 2016 Elsevier Ltd. All rights reserved.

Response of soft-bottom macrobenthic assemblages to artisanal trawling fisheries in a subtropical estuary

NASA Astrophysics Data System (ADS)

Ortega, Ileana; Colling, Leonir André; Dumont, Luiz Felipe Cestari

2018-07-01

Bottom trawling is one of the most harmful and widespread activities affecting benthic habitats and fauna. In this study, we analyzed the impact of shrimp trawling fisheries on the densities, assemblage structure and vertical stratification of the benthic macrofauna in shallow mudflats of the Patos Lagoon Estuary (Brazil). Experimental trawls of different intensities were performed during three shrimp fishing seasons (2015-2017), comparing macrofauna among before and after trawling, and a control zone. The changes in macrofaunal assemblages were more consistently related to natural variability than to trawling impact, being mostly influenced by sediment structure and salinity variation. The trawling impact was mainly detected in the area with higher percentages of fine sediments, with different macrofaunal responses in each month and stratum. Some non-significant decreases on total densities after trawling were observed, mainly on the superficial stratum, and signs of burial activities. The response to trawling disturbance of each species was different and it highly depended on their natural variability. Only five species showed significant variation to the trawling treatment (Erodona mactroides, Heleobia australis, H. charruana, Heteromastus similis and Laeonereis acuta), with temporally different responses. Decreasing densities were more related to the high impact treatment. In some seasons, decreases on the abundance of Monokalliapseudes schubarti after high impact trawls were up to 60% of the seasonal mean densities. Trawling fisheries may reduce macrobenthic densities but not their vertical stratification. The impact of trawling on key species may compromise the ecosystem function, as benthic macrofauna provide food sources for many aquatic resources. This study highlights trawling impacts in an estuarine nursery area, which should be fully considered since they may be reflected in the trophic webs.

Influence of food availability on the spatial distribution of juvenile fish within soft sediment nursery habitats

NASA Astrophysics Data System (ADS)

Tableau, A.; Brind'Amour, A.; Woillez, M.; Le Bris, H.

2016-05-01

Soft sediments in coastal shallow waters constitute nursery habitats for juveniles of several flatfishes. The quality of a nursery is defined by its capacity to optimize the growth and the survival of juvenile fish. The influence of biotic factors, such as food availability, is poorly studied at the scale of a nursery ground. Whether food availability limits juvenile survival is still uncertain. A spatial approach is used to understand the influence of food availability on the distribution of juvenile fish of various benthic and demersal species in the Bay of Vilaine (France), a productive nursery ground. We quantified the spatial overlap between benthic macro-invertebrates and their predators (juvenile fish) to assess if the latter were spatially covering the most productive areas of the Bay. Three scenarios describing the shapes of the predator-prey spatial relationship were tested to quantify the strength of the relationship and consequently the importance of food availability in determining fish distribution. Our results underline that both food availability and fish densities vary greatly over the nursery ground. When considering small organisational levels (e.g., a single fish species), the predator-prey spatial relationship was not clear, likely because of additional environmental effects not identified here; but at larger organisational level (the whole juvenile fish community), a strong overlap between the fish predators and their prey was identified. The evidence that fish concentrate in sectors with high food availability suggests that either food is the limiting factor in that nursery or/and fish display behavioural responses by optimising their energetic expenditures associated with foraging. Further investigations are needed to test the two hypotheses and to assess the impact of benthic and demersal juvenile fish in the food web of coastal nurseries.

Patterns of Deep-Sea Genetic Connectivity in the New Zealand Region: Implications for Management of Benthic Ecosystems

PubMed Central

Bors, Eleanor K.; Rowden, Ashley A.; Maas, Elizabeth W.; Clark, Malcolm R.; Shank, Timothy M.

2012-01-01

Patterns of genetic connectivity are increasingly considered in the design of marine protected areas (MPAs) in both shallow and deep water. In the New Zealand Exclusive Economic Zone (EEZ), deep-sea communities at upper bathyal depths (<2000 m) are vulnerable to anthropogenic disturbance from fishing and potential mining operations. Currently, patterns of genetic connectivity among deep-sea populations throughout New Zealand’s EEZ are not well understood. Using the mitochondrial Cytochrome Oxidase I and 16S rRNA genes as genetic markers, this study aimed to elucidate patterns of genetic connectivity among populations of two common benthic invertebrates with contrasting life history strategies. Populations of the squat lobster Munida gracilis and the polychaete Hyalinoecia longibranchiata were sampled from continental slope, seamount, and offshore rise habitats on the Chatham Rise, Hikurangi Margin, and Challenger Plateau. For the polychaete, significant population structure was detected among distinct populations on the Chatham Rise, the Hikurangi Margin, and the Challenger Plateau. Significant genetic differences existed between slope and seamount populations on the Hikurangi Margin, as did evidence of population differentiation between the northeast and southwest parts of the Chatham Rise. In contrast, no significant population structure was detected across the study area for the squat lobster. Patterns of genetic connectivity in Hyalinoecia longibranchiata are likely influenced by a number of factors including current regimes that operate on varying spatial and temporal scales to produce potential barriers to dispersal. The striking difference in population structure between species can be attributed to differences in life history strategies. The results of this study are discussed in the context of existing conservation areas that are intended to manage anthropogenic threats to deep-sea benthic communities in the New Zealand region. PMID:23185341

Cold-water coral habitats of Rockall and Porcupine Bank, NE Atlantic Ocean: Sedimentary facies and benthic foraminiferal assemblages

NASA Astrophysics Data System (ADS)

Smeulders, G. G. B.; Koho, K. A.; de Stigter, H. C.; Mienis, F.; de Haas, H.; van Weering, T. C. E.

2014-01-01

The extent of the cold-water coral mounds in the modern ocean basins has been recently revealed by new state-of-the-art equipment. However, not much is known about their geological extent or development through time. In the facies model presented here seven different types of seabed substrate are distinguished, which may be used for reconstruction of fossil coral habitats. The studied substrates include: off-mound settings, (foram) sands, hardgrounds, dead coral debris, and substrates characterized by a variable density of living coral framework. Whereas sediment characteristics only provide a basis for distinguishing on- and off-mound habitats and the loci of most prolific coral growth, benthic foraminiferal assemblages are the key to identifying different mound substrates in more detail. Specific foraminiferal assemblages are distinguished that are characteristic of these specific environments. Assemblages from off-mound settings are dominated by (attached) epifaunal species such as Cibicides refulgens and Cibicides variabilis. The attached epibenthic species Discanomalina coronata is also common in off-mound sediments, but it is most abundant where hardgrounds have formed. In contrast, the settings with coral debris or living corals attract shallow infaunal species that are associated with more fine-grained soft sediments. The typical ‘living coral assemblage' is composed of Cassidulina obtusa, Bulimina marginata, and Cassidulina laevigata. The abundance of these species shows an almost linear increase with the density of the living coral cover. The benthic foraminifera encountered from off-mound to top-mound settings appear to represent a gradient of decreasing current intensity and availability of suspended food particles, and increasing availability of organic matter associated with fine-grained sediment trapped in between coral framework.

Provenance of Holocene calcareous beach-dune sediments, Western Eyre Peninsula, Great Australian Bight, Australia

NASA Astrophysics Data System (ADS)

James, Noel P.; Bone, Yvonne

2017-07-01

Much of western Eyre Peninsula adjacent to the Great Australian Bight is veneered with siliceous and calcareous Quaternary aeolian dunes. The lengthy coastline adjacent to this cool-water carbonate factory is a series of Precambrian crystalline bedrock-Pleistocene aeolianite headlands that separate many long, sweeping, Holocene carbonate sand beaches and their backbeach dunes. Incessant SW waves, rolling swells, and onshore winds have resulted in > 350 km of semi-continuous calcareous strandline aeolian sands. The sediment is composed of quartz grains, Cenozoic limestone clasts, and relict particles (extraclasts) but the deposits are overwhelmingly dominated by contemporaneous biofragments from offshore. These skeletal grains are, in order of relative abundance, molluscs > benthic foraminifers > coralline algae > bryozoans, and echinoids. Benthic foraminifers are mostly small (especially rotaliids and miliolids) but the large relict symbiont-bearing protistMarginopora vertebralis, which grew in the latter stages of MIS 2, is present locally. There are no significant onshore-offshore trends within individual beach-dune complexes. There is, however, a prominent spatial partitioning, with extraclast-rich sediments in the north and biofragment-rich deposits in the south. This areal trend is interpreted to result from more active seafloor carbonate production in the south, an area of conspicuous seasonal nutrient upwelling and profound nektic and benthic biological productivity. The overall system is strikingly similar to Holocene and Pleistocene aeolianites along the inboard margin of the Lacepede Shelf and Bonney Coast some 500 km to the southeast, implying a potential universality to the nature of cool-water carbonate aeolianite deposition. The composition of these cool-water aeolianites is more multifaceted than those formed on warm-water, shallow flat-topped platforms, largely because of the comparatively deep, temperate shelf, the high-energy wave and swell climate impacting the shoreline, and thus the different geohistory during sea level change.

Extremely heat tolerant photosymbiosis in a shallow marine benthic foraminifera

NASA Astrophysics Data System (ADS)

Schmidt, Christiane; Danna, Titelboim; Janett, Brandt; Raphael, Morard; Barak, Herut; Sigal, Abramovich; Ahuva, Almogi-Labin; Michal, Kucera

2016-04-01

Thermal stress leads to the loss of algal symbionts (bleaching) in many shallow marine calcifiers including foraminifera. The bleaching threshold often occurs at water temperatures, which are likely to be exceeded in the near future due to global warming. Preadaptation represents one mechanism allowing photosymbiotic organisms to persist under warmer conditions, providing the tolerance can be carried to new habitats. Here we provide evidence for the existence of such adaptation in the benthic foraminifera Pararotalia calcariformata recently discovered in the eastern Mediterranean. We identify its symbionts as a consortium of diatom species dominated by Minutocellus polymorphus. We show that in the field, the foraminifera retains its pigments at a thermally polluted site, where peak water temperatures reach 36°C. To test whether this tolerance represents a widespread adaptation, we conducted manipulative experiments exposing populations from an unpolluted site to elevated temperatures for up to three weeks. The populations were kept in co-culture with the more thermally sensitive diatom-bearing foraminifera Amphistegina lobifera. Reduced photosynthetic activity in A. lobifera occurred at 32°C whereas photochemical stress in P. calcariformata was first observed during exposure to 36°C and chronic photoinhibition (but not mortality) first occurred at 42°C. Survivorship was high in all treatments, and growth was observed under thermal conditions similar to summer maxima at the thermally polluted site (35-36°C). The photosymbiosis in P. calcariformata is unusually thermally tolerant for a photosymbiont-bearing eukaryote. The thermal tolerance of this photosymbiosis is present in a natural environment where its thermal threshold is never realized. These observations imply that photosymbiosis in marine protists can respond to elevated temperatures by drawing on a pool of naturally occurring pre-adaptations. It also provides a perspective on the massive occurrence of symbiont-bearing foraminifera in the early Cenozoic hothouse climate.

A new stratigraphic model for the deposition of the Dammam Formation

NASA Astrophysics Data System (ADS)

Lokier, Stephen; Fiorini, Flavia; Min, Jina

2017-04-01

In recent years, mixed siliciclastic-carbonate successions have increasingly become targets for hydrocarbon exploration and production activities. Despite the abundance of these successions throughout the Middle East, there have been very few attempts to employ quantitative techniques to interpret their depositional settings and to develop constrained sequence stratigraphic models for their deposition. This study focuses on the Eocene age Dammam Formation that crops out on the flanks of the Jebel Hafeet anticline south of Al Ain in the United Arab Emirates. The Dammam Formation comprises units alternating between poorly-lithified, easily-weathered, siliciclastic and marly horizons and well-lithified limestones. These units were deposited in a foreland basin that formed in association with the Late Cretaceous obduction of the Semail Ophiolite onto the northeastern margin of the Arabian Plate. The Paleogene infilling of this basin is recorded in the shallowing-upward sedimentary sequence of the lithologies of the Pabdeh Group. This succession records the transition from marine carbonate sedimentation, through increasingly evaporitic-dominated units during the late Eocene to early Miocene to a fluvial-alluvial system by mid to late Miocene times. The Dammam Formation was deposited in an open shallow-marine setting strongly influenced by the influx of siliciclastic material sourced from the close-by uplifted massif of the obducted ophiolite. The skeletal assemblage of the Dammam Formation is dominated by Nummulites and Assilina larger benthic foraminifera along with subordinate smaller foraminifera, echinoids, bivalves, corals, bryozoan, gastropods, echinoids and calcareous algae. Previous studies of the Dammam Formation have employed the biotic component in the reconstruction of water depth. However, these studies neglected to consider that turbidity, associated with the abundant siliciclastic component, resulted in a reduction in the depth of the euphotic zone and a consequent response of the benthic biota. We employ a range of quantitative analytical techniques in order to constrain the influence of the siliciclastic component on the lithofacies of the Dammam Formation and present a new sequence stratigraphic model for the deposition of the formation.

Bringing the Coastal Zone into Finer Focus

NASA Astrophysics Data System (ADS)

Guild, L. S.; Hooker, S. B.; Kudela, R. M.; Morrow, J. H.; Torres-Perez, J. L.; Palacios, S. L.; Negrey, K.; Dungan, J. L.

2015-12-01

Measurements over extents from submeter to 10s of meters are critical science requirements for the design and integration of remote sensing instruments for coastal zone research. Various coastal ocean phenomena operate at different scales (e.g. meters to kilometers). For example, river plumes and algal blooms have typical extents of 10s of meters and therefore can be resolved with satellite data, however, shallow benthic ecosystem (e.g., coral, seagrass, and kelp) biodiversity and change are best studied at resolutions of submeter to meter, below the pixel size of typical satellite products. The delineation of natural phenomena do not fit nicely into gridded pixels and the coastal zone is complicated by mixed pixels at the land-sea interface with a range of bio-optical signals from terrestrial and water components. In many standard satellite products, these coastal mixed pixels are masked out because they confound algorithms for the ocean color parameter suite. In order to obtain data at the land/sea interface, finer spatial resolution satellite data can be achieved yet spectral resolution is sacrificed. This remote sensing resolution challenge thwarts the advancement of research in the coastal zone. Further, remote sensing of benthic ecosystems and shallow sub-surface phenomena are challenged by the requirements to sense through the sea surface and through a water column with varying light conditions from the open ocean to the water's edge. For coastal waters, >80% of the remote sensing signal is scattered/absorbed due to the atmospheric constituents, sun glint from the sea surface, and water column components. In addition to in-water measurements from various platforms (e.g., ship, glider, mooring, and divers), low altitude aircraft outfitted with high quality bio-optical radiometer sensors and targeted channels matched with in-water sensors and higher altitude platform sensors for ocean color products, bridge the sea-truth measurements to the pixels acquired from satellite and high altitude platforms. We highlight a novel NASA airborne calibration, validation, and research capability for addressing the coastal remote sensing resolution challenge.

Geological Characteristics of Active Methane Expulsion In Accretionary Prism Kaoping Slope Off SW Taiwan

NASA Astrophysics Data System (ADS)

Huang, C.; Chien, C.; Yang, T. F.; Lin, S.

2005-12-01

The Kaoping Slope off SW Taiwan represents the syn-collision accretionary prism characterized by active NW-trending folding - thrusting structures and high sedimentation rate favoring the formation of gas hydrate. For an assessment of gas hydrate potential in the Kaoping Slope off SW Taiwan, sedimentology, paleontology and geochemistry in box cores and piston cores were studied. BSRs are commonly found in seismic profiles in 400-600 m below seafloor of water depth 2500-1000 m. Active expulsions of methane were found along active thrust faults where sulfate/methane interface could be as shallow as 30 cm and the methane concentration of dissolved gases in bottom water and in pore-space of drilled core samples could be three-four order higher than the normal marine environments. Occurrences of authigenic carbonate and elongated pyrite tubes are correlated with shallow SMI depth and high methane content in bottom water and pore-space of sediment cores. Authigenic carbonates were found in seafloor surface and in 20-25 meters below seafloor. The authigenic carbonate nodules are characterized by irregular shape, whitish color, no visible microfossil, containing native sulfur, pyrites, gypsum, small open spaces, and very depleted carbon isotope (-54 ~ -43 per mil PDB). Tiny native sulfur and gypsum crystals were commonly found either on surface of foraminiferal tests and elongated pyrite tubes or in the authigenic carbonate nodules. Morphological measurements of elongated pyrite tubes show that they could represent pseudomorphs after three types of Pogonophora tube worm. Foraminifers are commonly filled by rhomboidal pyrites or cemented by pyrite crystals. Normal marine benthic foraminifers predominated by calcareous tests of slope fauna are associated with authigenic carbonate nodules in the study area, suggesting no major geochemistry effect on distribution of benthic foraminifers. Integrating sedimentology, paleontology and geochemistry characters, there could be high potential to have gas hydrate in the accretionary prism off SW Taiwan.

Diversity of the benthic macrofauna off northern Namibia from the shelf to the deep sea

NASA Astrophysics Data System (ADS)

Eisenbarth, Simone; Zettler, Michael L.

2016-03-01

In late summer 2011, shortly after an upwelling event, 17 stations ranging from 30 to 2513 m water depth have been sampled at 20° south in the northern part of the Benguela Current Large Marine Ecosystem (BCLME) for the investigation of the benthic macrofauna. Sediments of this area are dominated by silt. At the time of sampling, oxygen conditions on the shelf were poor (between 0.42 and 0.68 ml l- 1) but not hypoxic. Below 400 m, however, concentrations rose steadily up to 5.28 ml l- 1. Macrozoobenthic communities along this depth gradient are described, revealing among others the community structure for the continental margin area and the deep sea off northern Namibia for the first time. Cluster analysis revealed 5 different communities along the depth gradient with three shelf communities, one continental margin community and one deep-sea community. All in all, 314 different taxa were found with polychaetes being the most abundant group. Diversity index (Shannon) was lowest for the shallow water community with 2.21 and highest for the deep-sea community with 4.79, showing a clear trend with increasing water depth. Species richness, however, reached its maximum with 187 taxa along the continental margin between 400 and 1300 m water depth. Dominant species for each community are named with the two Cumacea, Iphinoeafricana and Upselaspis caparti, being characteristic for the shallow water community. On the shelf, we found surprisingly high biomass values (23-123 g m- 2), mainly caused by polychaetes, the bivalve Sinupharus galatheae and the gastropod Nassarius vinctus. In terms of composition, the remaining communities were dominated by polychaetes with members of the Paraonidae dominating along the continental margin where we also found surprisingly high abundances of the bivalves Pecten sp. and Dosinia sp. Spionid polychaetes and some representatives of the genus Paraonis were the most common organisms for the deep-sea community.

An Ocean Acidification Pulse in the Pre-onset Carbon Isotope Excursion Preceding the Paleocene-Eocene Thermal Maximum

NASA Astrophysics Data System (ADS)

Robinson, M. M.; Self-Trail, J. M.; Willard, D. A.; Stassen, P.; Spivey, W.

2015-12-01

The Paleocene-Eocene Thermal Maximum (PETM; ~55.5 Ma) is recognized globally in marine sediments by a carbonate dissolution zone, the extinction or turnover of benthic taxa, and a radiation of planktic excursion taxa, all accompanied by a rapid-onset, negative carbon isotope excursion (CIE). The cause and nature of the massive carbon release leading to this extreme climate event remains under debate. Regardless of cause, the environmental and ecosystem changes centered on the PETM are the subject of much study because they provide an analog to modern deteriorating conditions associated with the ongoing rise in atmospheric carbon dioxide. We present evidence from sediments of the South Dover Bridge core, deposited on the U.S. mid-Atlantic shelf, for an ocean acidification event in the latest Paleocene that coincides with a relatively small (-2‰) negative carbon isotope excursion (CIE) that precedes the larger (-4‰) Paleocene-Eocene CIE onset. Planktic foraminifers during this pre-onset event (POE) show post-deposition dissolution in which the coarsely cancellate and muricate wall textures characteristic of many Late Paleocene species have been dissolved away, leaving smooth, thin-walled specimens often with collapsed chambers. In addition, we document biotic responses in benthic, planktic, and terrestrial communities to the POE, including shifts in foraminifer and pollen assemblages and adaptations in calcareous nannofossil species in response to environmental perturbations. A complete recovery is evident between the POE and CIE in both the carbon isotopic signal and in the biotic response, providing additional evidence not only for a pulsed carbon release, but also for a more rapid rate of carbon release than is suggested by a single pulse over a longer period of time. The timing, nature and magnitude of ecological changes during the less extreme POE shallow water acidification event may help to define the ecological tipping point of shallow marine ecosystems.

Complex interactions between autotrophs in shallow marine and freshwater ecosystems: implications for community responses to nutrient stress.

PubMed

Havens, K E; Hauxwell, J; Tyler, A C; Thomas, S; McGlathery, K J; Cebrian, J; Valiela, I; Steinman, A D; Hwang, S J

2001-01-01

The relative biomass of autotrophs (vascular plants, macroalgae, microphytobenthos, phytoplankton) in shallow aquatic ecosystems is thought to be controlled by nutrient inputs and underwater irradiance. Widely accepted conceptual models indicate that this is the case both in marine and freshwater systems. In this paper we examine four case studies and test whether these models generally apply. We also identify other complex interactions among the autotrophs that may influence ecosystem response to cultural eutrophication. The marine case studies focus on macroalgae and its interactions with sediments and vascular plants. The freshwater case studies focus on interactions between phytoplankton, epiphyton, and benthic microalgae. In Waquoit Bay, MA (estuary), controlled experiments documented that blooms of macroalgae were responsible for the loss of eelgrass beds at nutrient-enriched locations. Macroalgae covered eelgrass and reduced irradiance to the extent that the plants could not maintain net growth. In Hog Island Bay, VA (estuary), a dense lawn of macroalgae covered the bottom sediments. There was reduced sediment-water nitrogen exchange when the algae were actively growing and high nitrogen release during algal senescence. In Lakes Brobo (West Africa) and Okeechobee (FL), there were dramatic seasonal changes in the biomass and phosphorus content of planktonic versus attached algae, and these changes were coupled with changes in water level and abiotic turbidity. Deeper water and/or greater turbidity favored dominance by phytoplankton. In Lake Brobo there also was evidence that phytoplankton growth was stimulated following a die-off of vascular plants. The case studies from Waquoit Bay and Lake Okeechobee support conceptual models of succession from vascular plants to benthic algae to phytoplankton along gradients of increasing nutrients and decreasing under-water irradiance. The case studies from Hog Island Bay and Lake Brobo illustrate additional effects (modified sediment-water nutrient fluxes, allelopathy or nutrient release during plant senescence) that could play a role in ecosystem response to nutrient stress.

Vertical visual features have a strong influence on cuttlefish camouflage.

PubMed

Ulmer, K M; Buresch, K C; Kossodo, M M; Mäthger, L M; Siemann, L A; Hanlon, R T

2013-04-01

Cuttlefish and other cephalopods use visual cues from their surroundings to adaptively change their body pattern for camouflage. Numerous previous experiments have demonstrated the influence of two-dimensional (2D) substrates (e.g., sand and gravel habitats) on camouflage, yet many marine habitats have varied three-dimensional (3D) structures among which cuttlefish camouflage from predators, including benthic predators that view cuttlefish horizontally against such 3D backgrounds. We conducted laboratory experiments, using Sepia officinalis, to test the relative influence of horizontal versus vertical visual cues on cuttlefish camouflage: 2D patterns on benthic substrates were tested versus 2D wall patterns and 3D objects with patterns. Specifically, we investigated the influence of (i) quantity and (ii) placement of high-contrast elements on a 3D object or a 2D wall, as well as (iii) the diameter and (iv) number of 3D objects with high-contrast elements on cuttlefish body pattern expression. Additionally, we tested the influence of high-contrast visual stimuli covering the entire 2D benthic substrate versus the entire 2D wall. In all experiments, visual cues presented in the vertical plane evoked the strongest body pattern response in cuttlefish. These experiments support field observations that, in some marine habitats, cuttlefish will respond to vertically oriented background features even when the preponderance of visual information in their field of view seems to be from the 2D surrounding substrate. Such choices highlight the selective decision-making that occurs in cephalopods with their adaptive camouflage capability.

The types of the landslide by the heavy rain presumed from geographical and geological features in Japan

NASA Astrophysics Data System (ADS)

Doshida, S.

2014-12-01

Various types of a landslide, such as a deep-seated landslide, a shallow landslide, and a debris flow, exist. And the risk and the damage area of a landslide change greatly with the types. Therefore it is very important to guess the type of a landslide generated in the future, in order to decrease the damage of a landslide. In this research, I investigated and studied the landslide disaster which occurred in the typhoon No.12 disaster in 2011 and the northern Kyusyu-island heavy rain disaster 2012, in Japan. The purpose of the study presumes the types of a landslide generated in the future by analyzing geographical and geological features. 　Many deep-seated landslides and shallow landslides (debris flows) occurred by the typhoon No.12, 2011 in Japan. The precipitation exceeds 1,800 mm in four days in part regionally. Landslides occurred frequently in the Totsukawa area (Northern part) and Nachi-Katsuura area (Southern part), both area were the precipitation of about 1000 mm in four days. In the Totsukawa area, deep-seated landslides occurred frequently, and in Nachi-Katsuura area, shallow landslides (debris flows) occurred frequently. On the other hand, many deep-seated landslides and shallow landslides occurred by the northern Kyusyu-island heavy rain disaster 2012 in Japan too. Landslides occurred frequently in the Hoshino village area (Northern part) and Asodani area (Southern part). In both area, the total precipitation exceeds 500 mm and the hourly precipitation is about 80 mm. In the Hoshino village area, deep-seated landslides occurred frequently, and in Asodani area, shallow landslides occurred frequently. 　The result compared with the deep-seated landslide area (Totsukawa and Hoshino village) and the shallow landslide area (Nachi-Katsuura and Asodani), area of landslide is larger and number of landslide is fewer in the deep-seated landslide area. In the shallow landslide area, the slope is steeper and the drainage network is more developed. It is surmised that these geographical differentiations are the geographical features formed of the past landslide. Therefore, it is important to read and analyze the past landslide disaster hysteresis from geographical feature for specifying the type of a landslide.

Deglacial hydrography and IRD inputs: A comparison of Terminations I and II in the N.E. Atlantic

NASA Astrophysics Data System (ADS)

Hibbert, Fiona; Chapman, Mark; Austin, William; Rohling, Eelco

2015-04-01

We present a high resolution marine record (MD04-2822) from the N.E. Atlantic. This record captures the demise of the penultimate glaciation (Termination II) in high resolution. The record of co-registered proxies offers the opportunity to investigate the evolution of the last two deglacial events in the North Atlantic. The deglacial evolution of Termination II is much less well documented than the last deglaciation (Termination I). A striking feature of Termination II in the MD04-2822 record, are several large (~1 ‰) oscillations in benthic δ18O, reflecting oscillations in sea level (e.g. Grant et al., 2012, Thomas et al., 2009) and/or deep sea temperatures (cf. Skinner and Shackleton, 2006). Also notable is the markedly different pattern of surface and deep water evolution for the two deglaciations. Termination I is characterised by a short offset between benthic δ18O decrease and δ13C increase (and northwards migration of the polar front) whereas during Termination II, benthic δ13C 'improvement' (and inferred resumption in overturning) occurs only during the Marine Isotope Stage (MIS) 5e plateau, giving the marine record it's characteristic 'drawn-out' appearance. The most conspicuous feature of the penultimate deglacial in most marine cores is Heinrich event 11 (H11), an extensive episode of ice rafted debris (IRD) discharge that spread across the North Atlantic to the margin of what is now the subtropical gyre (Chapman et al., 2000). H11 generally manifests in marine records as one large and long (~ 2.5 ka) event throughout the Termination. In MD04-2822 however, there are multiple IRD events within the Termination. The continued influence of the disintegrating N. hemisphere ice sheets is also evident within the benthic δ13C and surface conditions (the polar front migrates north of the core site early within MIS 5e following a brief SST reversal).

Upper Cretaceous ramp limestones from the Sorrento Peninsula (southern Apennines, Italy): micro- and macrofossil associations and their significance in the depositional sequences

NASA Astrophysics Data System (ADS)

Carannante, G.; Ruberti, D.; Sirna, M.

2000-04-01

The Upper Cretaceous limestones of the Sorrento Peninsula are primarily characterized by wackestone/packstone with benthic foraminifers, thaumatoporellaceans and Aeolisaccus sp. and by rudist floatstones. Rudists in growth position are rare; most of them appear toppled and locally oriented but not reworked. In some cases they form small bouquets no more than 30 cm thick. The successions analyzed in the Sorrento Peninsula encompass a variety of facies representative of inner shelf environments in a ramp-like depositional setting. On the basis of lithologic and sedimentologic characteristics and on a qualitative analysis of the biofacies, three major facies associations have been recognized corresponding to: (a) intertidal silty-sand flats and shallow lagoons; (b) subtidal mobile foraminiferal sand sheets; (c) subtidal rudist dwelt sand plain. In the lower part of the successions periodic (more or less prolonged) emersions (subaqueous with fresh/brackish waters or subaerial exposure) are documented. The upper part of each succession lacks any emersion evidence; submarine exposure surfaces are testified by firmground-related features. The periodic influence of high-energy regimes (some storm-related events) is documented by wave- and cross-laminations, HCS and the lack of fine sediments. Lithofacies are arranged in depositional cycles that may correspond to individual beds. The boundaries of the depositional cycles show evidence of subaerial or submarine exposures. The nature and position of these discontinuity surfaces in the successions provide an important clue to interpretation in terms of both depositional environment and vertical evolution. The increase in thickness of the depositional cycles and the gradual change from peritidal/shallow-subtidal cycles to dominantly subtidal cycles, document an increase in the amount of accommodation space which resulted from a long-term rise in relative sea-level. A detailed study of benthic associations (micro- and macrofauna) has been carried out in order to identify accurately further signs of periodicity contained within the successions as a whole. These Upper Cretaceous limestones are abundantly fossiliferous with only a moderately diverse fauna. There are no significant differences in terms of species, the assemblages simply reflecting differences in abundance of the same species. Taphonomic studies of rudist-rich beds permit seven major shell-bed types to be distinguished. Six main foraminiferal assemblages have been detected, and the distribution and relative abundance of the species have been examined within the environments inferred through facies analysis. The taphonomic data and the foraminiferal assemblage abundance and diversity, have been compared with lithologic and sedimentologic data in order to elucidate their distribution within depositional cycles and throughout the successions. The successions show little up-section changes in lithology and in taxonomic composition of the foraminiferal assemblages. It is therefore difficult to establish a paleoenvironmental trend independent of the rudist shell concentrations, which do change up-section. We noticed an overall increase in thickness and abundance of the shell beds and a shift in types of shell concentration and in taxonomic composition. These characteristics, associated with the upward disappearance of emersion surfaces, the higher frequency of storm and/or wave intercalations, the increase in thickness of the depositional sequences and the gradual change from peritidal/shallow-subtidal cycles to dominantly subtidal cycles, document a general deepening-upward trend. More open water conditions with a depth between fairweather and storm wave-base became established as a result of relative sea-level rise and to a consequent increase in the available accommodation space.

The timing of termination I in benthic δ18O of the Atlantic, Pacific, and Mediterranean basins

NASA Astrophysics Data System (ADS)

Konijnendijk, T.

2014-12-01

Terminations used to be regarded as effectively globally synchronous events. As such they were used (amongst other features) in aligning cores by Lisiecki and Raymo (2005) in their widely accepted global benthic stack. Skinner and Shackleton (2005) showed, however, that this assumption of synchronicity may not hold. In a detailed study of the last glacial-interglacial transition, an Atlantic record from the Iberian Margin and a record from the deep eastern equatorial Pacific - both dated by 14C for a solid, independent age estimate - show a significant discrepancy in timing: ~4,000 years. Indeed, in 2009 Lisiecki and Raymo published a separate reconstruction for the Atlantic and Pacific records in their stack, and found indications for diachronous termination signals for the last five terminations. We compared the Atlantic and Pacific records of Skinner and Shackleton (2005) to the benthic isotope record of ODP site 968 in the eastern Mediterranean published by Ziegler et al. (2010), to see how the Mediterranean record feeds into this discussion. The age model for this record is constrained by the carbon dated boundaries of saproprel 1 as well as correlation to the radiometrically dated cave record of Sanbao-Hulu (Wang et al., 2008). The benthic δ18O record of ODP site 968 resembles the Pacific record much more than the geographically closer Iberian Margin record. This raises questions: whether the Late Glacial/Early Holocene benthic record of MD99-2334K on the Iberian Margin is representative of Atlantic benthic δ18O; what oceanographic factors could have influenced the benthic δ18O of the sites involved; whether there is, after all, a globally synchronous, two-step deglaciation in the Mediterranean, Atlantic, and Pacific basins. Lisiecki and Raymo, 2005. DOI: 10.1029/2004PA001071 Lisiecki and Raymo, 2005. DOI: 10.1029/2009PA001732 Skinner and Shackleton, 2005: DOI: 10.1016/j.quascirev.2004.11.008 Wang et al. 2008: doi:10.1038/nature06692. Ziegler et al., 2010: DOI: 10.1016/j.quascirev.2010.03.011

Community composition, distribution, and contribution of microbenthos in offshore sediments from the Yellow Sea

NASA Astrophysics Data System (ADS)

Meng, Zhaocui; Xu, Kuidong; Lei, Yanli

2011-09-01

We investigated the spatial distribution and composition of microbenthos in the seafloor sediments from 48 stations in the Yellow Sea using epifluorescence microscopy and quantitative protargol staining techniques. The bacterial abundance ranged from 2.4×10 8 to 1.9×10 9 cells cm -3 in the wet sediment, about three orders of magnitude higher than that of phototrophic (PNFs, from 6.4×10 5 to 8.8×10 6 cells cm -3) and heterotrophic nanoflagellates (HNFs, from 5.8×10 4 to 5.9×10 6 cells cm -3) and four orders of magnitude higher than that of cyanobacteria (from 2.3×10 4 to 2.3×10 6 cells cm -3) in the upper 5 cm of sediments. The abundance of diatoms varied greatly, from 3-1.1×10 5 cells cm -3 in the upper 8 cm of sediments, whereas those of heterotrophic microflagellates (HMFs, 1-182 cells cm -3) and ciliates (1-221 cells cm -3) were less varied and lower. The biomass partitioning indicates the primary importance of benthic bacteria (50.3 μg C cm -3 on average), followed by PNFs (40.7 μg C cm -3), HNFs (19.3 μg C cm -3), and finally by cyanobacteria (8.8 μg C cm -3). Benthic diatoms (0.8 μg C cm -3), ciliates (0.15 μg C cm -3), and HMFs (0.03 μg C cm -3) contribute relatively small fractions to the total biomass of the microbenthos. About 95% of diatoms, 77% of ciliates, and 56% of HMFs were distributed in the upper 2 cm of sediments, whereas no distinct vertical distributions were observed for bacteria, cyanobacteria, PNFs, and HNFs. The microbenthos are quantitatively important in the shallow seafloor, wherein their main components have an average abundance three orders of magnitude higher than the corresponding planktonic organisms in the same sea area. Our estimates indicate that pico-sized phytobenthos might contribute a large proportion to the primary production. Benthic ciliates and heterotrophic flagellates contribute about 90% to the estimated combined metabolic rate of micro- and meiobenthic consumers in the whole sea area, with nanoheterotrophs accounting for the majority. The data suggest the potential for the rapid primary and secondary production of microbenthos and detrital utilization in the shallow seafloor sediments of the Yellow Sea.

An integrated bio-chemostratigraphic framework for Lower Cretaceous (Barremian-Cenomanian) shallow-water carbonates of the Central Apennines (Italy)

NASA Astrophysics Data System (ADS)

Schmitt, Katharina; Heimhofer, Ulrich; Frijia, Gianluca; Huck, Stefan

2017-04-01

Shallow-water carbonate platform sections are valuable archives for the reconstruction of deep-time environmental and climatic conditions, but the biostratigraphic resolution is often rather low. Moreover, chemostratigraphic correlation with well-dated pelagic sections by means of bulk carbonate carbon-isotope stratigraphy is notoriously difficult and afflicted with large uncertainties, as shallow-water sections are particularly prone to the impact of diagenesis. In the current study, an integrated biostratigraphic-chemostratigraphic approach is applied to southern Tethyan Lower Cretaceous carbonate platform deposits (Santa Lucia, Monte La Costa sections) situated in the Central Apennines in Italy. The 500 m thick Santa Lucia section, representing an open lagoonal inner carbonate platform setting, provides a characteristic carbon- and oxygen-isotope pattern that allows for correlation with pelagic composite reference curves (Vocontian and Umbria Marche basins). Calibrated by means of foraminiferal biostratigraphy and rudist bivalve strontium-isotope stratigraphy, the section serves as local chemostratigraphic shallow-water reference for the Barremian to Cenomanian. The 250 m thick Monte La Costa section comprises predominantly coarse grained (biostromal) and often strongly cemented shelf margin deposits. Although benthic foraminifera are scarce and the carbonates evidently suffered strong diagenetic alteration, high-resolution (rudist shell) strontium-isotope stratigraphy in combination with superimposed carbon-isotope trends and biological-lithological changes (e.g., mass occurrences of Bacinella irregularis s.l) enables correlation with the Early Albian to Cenomanian portion of the Santa Lucia reference section. At both localities, chemostratigraphy indicates a major gap covering large parts of the Lower and middle Cenomanian. After having considerably improved the stratigraphic resolution of the studied sections, selected best-preserved rudist shells are going to be used for sclerochronological investigations. This will allow reconstructing the impact of long-term (Myr) and short-term (seasonal) paleoclimatic and paleoenvironmental changes on Cretaceous shallow seas.

Impact of tectonic and volcanism on the Neogene evolution of isolated carbonate platforms (SW Indian Ocean)

NASA Astrophysics Data System (ADS)

Courgeon, S.; Jorry, S. J.; Jouet, G.; Camoin, G.; BouDagher-Fadel, M. K.; Bachèlery, P.; Caline, B.; Boichard, R.; Révillon, S.; Thomas, Y.; Thereau, E.; Guérin, C.

2017-06-01

Understanding the impact of tectonic activity and volcanism on long-term (i.e. millions years) evolution of shallow-water carbonate platforms represents a major issue for both industrial and academic perspectives. The southern central Mozambique Channel is characterized by a 100 km-long volcanic ridge hosting two guyots (the Hall and Jaguar banks) and a modern atoll (Bassas da India) fringed by a large terrace. Dredge sampling, geophysical acquisitions and submarines videos carried out during recent oceanographic cruises revealed that submarine flat-top seamounts correspond to karstified and drowned shallow-water carbonate platforms largely covered by volcanic material and structured by a dense network of normal faults. Microfacies and well-constrained stratigraphic data indicate that these carbonate platforms developed in shallow-water tropical environments during Miocene times and were characterized by biological assemblages dominated by corals, larger benthic foraminifera, red and green algae. The drowning of these isolated carbonate platforms is revealed by the deposition of outer shelf sediments during the Early Pliocene and seems closely linked to (1) volcanic activity typified by the establishment of wide lava flow complexes, and (2) to extensional tectonic deformation associated with high-offset normal faults dividing the flat-top seamounts into distinctive structural blocks. Explosive volcanic activity also affected platform carbonates and was responsible for the formation of crater(s) and the deposition of tuff layers including carbonate fragments. Shallow-water carbonate sedimentation resumed during Late Neogene time with the colonization of topographic highs inherited from tectonic deformation and volcanic accretion. Latest carbonate developments ultimately led to the formation of the Bassas da India modern atoll. The geological history of isolated carbonate platforms from the southern Mozambique Channel represents a new case illustrating the major impact of tectonic and volcanic activity on the long-term evolution of shallow-water carbonate platforms.

Does turbidity induced by Carassius carassius limit phytoplankton growth? A mesocosm study.

PubMed

He, Hu; Hu, En; Yu, Jinlei; Luo, Xuguang; Li, Kuanyi; Jeppesen, Erik; Liu, Zhengwen

2017-02-01

It is well established that benthivorous fish in shallow lakes can create turbid conditions that influence phytoplankton growth both positively, as a result of elevated nutrient concentration in the water column, and negatively, due to increased attenuation of light. The net effect depends upon the degree of turbidity induced by the benthivores. Stocked Carassius carassius dominate the benthivorous fish fauna in many nutrient-rich Chinese subtropical and tropical shallow lakes, but the role of the species as a potential limiting factor in phytoplankton growth is ambiguous. Clarification of this relationship will help determine the management strategy and cost of restoring eutrophic lakes in China and elsewhere. Our outdoor mesocosm experiment simulating the effect of high density of crucian carp on phytoplankton growth and community structure in eutrophic shallow lakes suggests that stocking with this species causes resuspension of sediment, thereby increasing light attenuation and elevating nutrient concentrations. However, the effect of light attenuation was insufficient to offset the impact of nutrient enhancement on phytoplankton growth, and significant increases in both phytoplankton biomass and chlorophyll a concentrations were recorded. Crucian carp stocking favored the dominance of diatoms and led to lower percentages (but not biomass) of buoyant cyanobacteria. The dominance of diatoms may be attributed to a competitive advantage of algal cells with high sedimentation velocity in an environment subjected to frequent crucian carp-induced resuspension and entrainment of benthic algae caused by the fish foraging activities. Our study demonstrates that turbidity induced by stocked crucian carp does not limit phytoplankton growth in eutrophic waters. Thus, removal of this species (and presumably other similar taxa) from subtropical or tropical shallow lakes, or suspension of aquaculture, is unlikely to boost phytoplankton growth, despite the resulting improvements in light availability.

Spatial changes in fatty acids signatures of the great scallop Pecten maximus across the Bay of Biscay continental shelf

NASA Astrophysics Data System (ADS)

Nerot, Caroline; Meziane, Tarik; Schaal, Gauthier; Grall, Jacques; Lorrain, Anne; Paulet, Yves-Marie; Kraffe, Edouard

2015-10-01

The spatial variability of food resources along continental margins can strongly influence the physiology and ecology of benthic bivalves. We explored the variability of food sources of the great scallop Pecten maximus, by determining their fatty acid (FA) composition along an inshore-offshore gradient in the Bay of Biscay (from 15 to 190 m depth). The FA composition of the digestive gland showed strong differences between shallow and deep-water habitats. This trend was mainly driven by their content in diatom-characteristic fatty acids, which are abundant near the coast. Scallops collected from the middle of the continental shelf were characterized by higher contents of flagellate markers than scallops from shallow habitats. This could be related to a permanent vertical stratification in the water column, which reduced vertical mixing of waters, thereby enhancing organic matter recycling through the microbial loop. In the deeper water station (190 m), FA compositions were close to the compositions found in scallops from shallow areas, which suggest that scallops could have access to the same resources (i.e. diatoms). Muscle FA composition was more indicative of the physiological state of scallops over this depth range, revealing contrasting reproductive strategies among the two coastal sites and metabolic or physiological adaptation at greater depth (e.g. structural and functional adjustments of membrane composition). This study therefore revealed contrasted patterns between shallow and deeper habitats for both P. maximus muscle and digestive gland tissues. This emphasizes the variability in the diet of this species along its distribution range, and stresses the importance of analyzing different tissues for their FA composition in order to better understand their physiology and ecology.

Changing restoration rules: exotic bivalves interact with residence time and depth to control phytoplankton productivity

USGS Publications Warehouse

Lucas, Lisa V.; Thompson, Janet K.

2012-01-01

Non-native species are a prevalent ecosystem stressor that can interact with other stressors to confound resource management and restoration. We examine how interactions between physical habitat attributes and a particular category of non-native species (invasive bivalves) influence primary production in aquatic ecosystems. Using mathematical models, we show how intuitive relationships between phytoplankton productivity and controllable physical factors (water depth, hydraulic transport time) that hold in the absence of bivalves can be complicated—and even reversed—by rapid bivalve grazing. In light-limited environments without bivalves, shallow, hydrodynamically “slow” habitats should generally have greater phytoplankton biomass and productivity than deeper, “faster” habitats. But shallower, slower environments can be less productive than deeper, faster ones if benthic grazing is strong. Moreover, shallower and slower waters exhibit a particularly broad range of possible productivity outcomes that can depend on whether bivalves are present. Since it is difficult to predict the response of non-native bivalves to habitat restoration, outcomes for new shallow, slow environments can be highly uncertain. Habitat depth and transport time should therefore not be used as indicators of phytoplankton biomass and production where bivalve colonization is possible. This study provides for ecosystem management a particular example of a broad lesson: abiotic ecosystem stressors should be managed with explicit consideration of interactions with other major (including biotic) stressors. We discuss the applicability and management implications of our models and results for a range of aquatic system types, with a case study focused on the Sacramento-San Joaquin Delta (California, USA). Simple mathematical models like those used here can illuminate interactions between ecosystem stressors and provide process-based guidance for resource managers as they develop strategies to augment valued populations, restore habitats, and manipulate ecosystem functions.

The potential role of habitat-forming seaweeds in modeling benthic ecosystem properties

NASA Astrophysics Data System (ADS)

Bustamante, María; Tajadura, Javier; Díez, Isabel; Saiz-Salinas, José Ignacio

2017-12-01

Canopy-forming seaweeds provide specific habitats with key ecological properties and are facing severe declines worldwide with unforeseeable consequences for ecosystem processes. Investigating the loss of such natural habitats in order to develop management strategies for conservation is a major challenge in marine ecological research. This study investigated the shallow rocky bottoms of the southern Bay of Biscay at two sampling times with a view to identifying the effect of canopy seaweed availability on the taxonomic and functional properties of invertebrate multivariate structure, abundance, density, diversity and evenness. The multivariate taxonomic and functional structure of assemblages changed significantly according to canopy availability in terms of taxa and functional groups abundance, but no substantial change was observed in composition. Biogenic habitat simplification resulted in a decrease in total invertebrate abundance and in taxonomic and functional density and diversity, whilst no effects were observed in taxonomic and functional evenness. Loss of canopy involved an impoverishment of the whole community particularly for epiphytic colonial sessile suspension-feeders, but it also extended to non-epiphytic forms. Our results emphasize the importance of canopy decline as a major driver of changes in benthic ecosystem properties and highlight that biogenic space provided by canopy is a limiting resource for the development of rocky subtidal invertebrates.

First hyperspectral survey of the deep seafloor: DISCOL area, Peru Basin

NASA Astrophysics Data System (ADS)

Dumke, Ines; Nornes, Stein M.; Ludvigsen, Martin

2017-04-01

Conventional hyperspectral seafloor surveys using airborne or satellite platforms are typically limited to shallow coastal areas. This limitation is due to the requirement for illumination by sunlight, which does not penetrate into deeper waters. For hyperspectral studies in deeper marine environments, such as the deep sea, a close-range, sunlight-independent survey approach is therefore required. Here, we present the first hyperspectral data from the deep seafloor. The data were acquired in 4200 m water depth in the DISCOL (disturbance-recolonization) area in the Peru Basin (SW Pacific). This area is characterized by seafloor manganese nodules and recolonization by benthic fauna after a seafloor disturbance experiment conducted in 1989, and was revisited in 2015 by the JPI Oceans cruise SO-242. The acquisition setup consisted of a new Underwater Hyperspectral Imager (UHI) mounted on a remotely operated vehicle (ROV), which provided illumination of the seafloor. High spatial and spectral resolution were achieved by an ROV altitude of 1 m and recording of 112 spectral bands between 380 nm and 800 nm (4 nm resolution). Spectral classification was performed to classify manganese nodules and benthic fauna and map their distribution in the study area. The results demonstrate the high potential of underwater hyperspectral imaging in mapping and classifying seafloor deposits and habitats.

The role of seawater endocytosis in the biomineralization process in calcareous foraminifera.

PubMed

Bentov, Shmuel; Brownlee, Colin; Erez, Jonathan

2009-12-22

Foraminifera are unicellular organisms that inhabit the oceans in various ecosystems. The majority of the foraminifera precipitate calcitic shells and are among the major CaCO(3) producers in the oceans. They comprise an important component of the global carbon cycle and also provide valuable paleoceanographic information based on the relative abundance of stable isotopes and trace elements (proxies) in their shells. Understanding the biomineralization processes in foraminifera is important for predicting their calcification response to ocean acidification and for reliable interpretation of the paleoceanographic proxies. Most models of biomineralization invoke the involvement of membrane ion transporters (channels and pumps) in the delivery of Ca(2+) and other ions to the calcification site. Here we show, in contrast, that in the benthic foraminiferan Amphistegina lobifera, (a shallow water species), transport of seawater via fluid phase endocytosis may account for most of the ions supplied to the calcification site. During their intracellular passage the seawater vacuoles undergo alkalization that elevates the CO(3)(2-) concentration and further enhances their calcifying potential. This mechanism of biomineralization may explain why many calcareous foraminifera can be good recorders of paleoceanographic conditions. It may also explain the sensitivity to ocean acidification that was observed in several planktonic and benthic species.

Recent oxygen depletion and benthic faunal change in shallow areas of Sannäs Fjord, Swedish west coast

NASA Astrophysics Data System (ADS)

Nordberg, Kjell; Polovodova Asteman, Irina; Gallagher, Timothy M.; Robijn, Ardo

2017-09-01

Sannäs Fjord is a shallow fjord (< 32 m w.d.) with a sill depth of 8 m, located at the Swedish west coast of the Skagerrak (North Sea). The anthropogenic impact on the fjord represents combination of sewage from the local village of Sannäs and land run-off from agricultural areas. Sewage impact has been reduced since 1991 and today the fjord is included into several nature conservation programs administrated by the European Union. Yet, observations during the summers of 2008-2011 show that the shallow inner fjord inlet experiences severe oxygen depletion at 5-12 m water depth. To explore if the oxygen depletion is only a recent phenomenon and to evaluate the potential of fjord sediments to archive such environmental changes, in 2008 and 2009 seven sediment cores were taken along a transect oriented lengthwise in the fjord. The cores were analysed for organic carbon, C/N, benthic foraminifera and lead pollution records (as relative age marker). Carbon content increases in most of the cores since the 1970-80s, while C/N ratio decreases from the core base upward since 1995. Foraminiferal assemblages in most core stratigraphies are dominated by agglutinated species. Calcareous species (mainly elphidiids) have become dominant in the upper part of the records since the late 1990s or 2000 (the inner fjord and the deepest basin) and since the 1950-70s (the outer fjord). In the inner Sannäs Fjord, an increase of agglutinated foraminiferal species (e.g. Eggerelloides scaber) and organic inner linings occurred since the 1970s, suggesting an intensification of taphonomic processes affecting postmortem calcareous shell preservation. A study of living vs. dead foraminiferal assemblages undertaken during June-August 2013 demonstrates that in the shallow inner fjord, strong carbonate dissolution occurs within 1-3 months following the foraminiferal growth. The dissolution is linked to corrosive conditions present within the sediment - bottom water interface, and is likely caused by the organic matter decay, resulting in severe hypoxia to anoxia. Oxygen depletion at < 10 m w.d. develops fast due to the small water volume and limited bottom water exchange caused by a close proximity of pycnocline to the fjord bottom. Sediment cores from the deep fjord basin and the outer fjord are, on the contrary, characterized by good to excellent preservation of foraminiferal shells, higher sediment accumulation rates, and the greatest potential for high-resolution paleoenvironmental studies. Increased frequencies of low-oxygen tolerant species (e.g. Stainforthia fusiformis) in the outer fjord after the 1970s suggests that increased primary productivity and seasonal oxygen deficiency have existed in the area over the last century. Recent milder winters, absent sediment reworking by freezing and grounding of sea-ice, increased nutrient load due to higher precipitation and land run-off, and the luxuriant growth of filamentous green algae followed by the organic matter decay are discussed among the mechanisms driving formation of recent oxygen deficiency in the shallow fjord inlets.

Detecting modification of biomedical events using a deep parsing approach.

PubMed

Mackinlay, Andrew; Martinez, David; Baldwin, Timothy

2012-04-30

This work describes a system for identifying event mentions in bio-molecular research abstracts that are either speculative (e.g. analysis of IkappaBalpha phosphorylation, where it is not specified whether phosphorylation did or did not occur) or negated (e.g. inhibition of IkappaBalpha phosphorylation, where phosphorylation did not occur). The data comes from a standard dataset created for the BioNLP 2009 Shared Task. The system uses a machine-learning approach, where the features used for classification are a combination of shallow features derived from the words of the sentences and more complex features based on the semantic outputs produced by a deep parser. To detect event modification, we use a Maximum Entropy learner with features extracted from the data relative to the trigger words of the events. The shallow features are bag-of-words features based on a small sliding context window of 3-4 tokens on either side of the trigger word. The deep parser features are derived from parses produced by the English Resource Grammar and the RASP parser. The outputs of these parsers are converted into the Minimal Recursion Semantics formalism, and from this, we extract features motivated by linguistics and the data itself. All of these features are combined to create training or test data for the machine learning algorithm. Over the test data, our methods produce approximately a 4% absolute increase in F-score for detection of event modification compared to a baseline based only on the shallow bag-of-words features. Our results indicate that grammar-based techniques can enhance the accuracy of methods for detecting event modification.

Benthic biodiversity and ecological gradients in the Seno Magdalena (Puyuhuapi Fjord, Chile)

NASA Astrophysics Data System (ADS)

Betti, F.; Bavestrello, G.; Bo, M.; Enrichetti, F.; Loi, A.; Wanderlingh, A.; Pérez-Santos, I.; Daneri, G.

2017-11-01

Due to its complex hydrological, geomorphological and climatic features, the Chilean fjords region is considered among the most productive areas of the world. The benthic fauna of this region accounts for more than 1600 species showing marked latitudinal biogeographic differences characterizing this as one of the most important hotspot of biodiversity of cold-temperate environments. Despite numerous studies have been conducted to depict the biological characteristics of the fjords, the present situation is strongly unbalanced towards specific taxa. Hence, this study takes into consideration a community approach, highlighting the distribution of six benthic assemblages thriving on vertical walls along the Seno Magdalena fjord (Aysen region). Underwater pictures were used to characterize the trends in abundance and diversity of the main taxa showing distinct responses to salinity and turbidity. Among the less tolerant taxa to high fresh water inputs there are encrusting algae, mainly found in the most external sites lashed by outer currents, far from the estuarine plume. The bathymetric zonation of the assemblages, instead, is characterized by a dense mussel belt in the first 10 m, within a thick layer of low-salinity, nutrient-enriched waters. Rich assemblages of sponges, brachiopods, gorgonians and scleractinians thrive in deeper, marine, clear waters. The evaluation of the ecological role of benthic species leads both to the definition of potential bioindicator taxa responding to anthropic disturbances and to the promotion of protected areas.

Sediment facies of Enewetak Atoll lagoon. Geologic and geophysical investigations of Enewetak Atoll, Republic of the Marshall Islands. Professional paper

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wardlaw, B.R.; Henry, T.W.; Martin, W.E.

1991-01-01

Two sets of benthic (bottom-surface) samples were taken from the lagoon on Enewetak Atoll, Republic of the Marshall Islands, during the PEACE Program (1984-1985). These samples were collected to (1) familiarize project geologists with the distribution of sediment types and facies within Enewetak lagoon, (2) increase understanding of the distribution of modern microfaunas in the lagoon, and (3) supplement studies of the sea-floor features both within and near OAK and KOA craters. The benthic sample studies aided both evaluation of the stratigraphic sequence penetrated during the Drilling Phase and interpretation of the litho- and biostratigraphic framework used in analysis ofmore » OAK and KOA.« less

Applying data fusion techniques for benthic habitat mapping and monitoring in a coral reef ecosystem

NASA Astrophysics Data System (ADS)

Zhang, Caiyun

2015-06-01

Accurate mapping and effective monitoring of benthic habitat in the Florida Keys are critical in developing management strategies for this valuable coral reef ecosystem. For this study, a framework was designed for automated benthic habitat mapping by combining multiple data sources (hyperspectral, aerial photography, and bathymetry data) and four contemporary imagery processing techniques (data fusion, Object-based Image Analysis (OBIA), machine learning, and ensemble analysis). In the framework, 1-m digital aerial photograph was first merged with 17-m hyperspectral imagery and 10-m bathymetry data using a pixel/feature-level fusion strategy. The fused dataset was then preclassified by three machine learning algorithms (Random Forest, Support Vector Machines, and k-Nearest Neighbor). Final object-based habitat maps were produced through ensemble analysis of outcomes from three classifiers. The framework was tested for classifying a group-level (3-class) and code-level (9-class) habitats in a portion of the Florida Keys. Informative and accurate habitat maps were achieved with an overall accuracy of 88.5% and 83.5% for the group-level and code-level classifications, respectively.

Effects of depth and crayfish size on predation risk and foraging profitability of a lotic crayfish

USGS Publications Warehouse

Flinders, C.A.; Magoulick, D.D.

2007-01-01

We conducted field surveys and experiments to determine whether observed distributions of crayfish among habitats were influenced by differential resource availability, foraging profitability, and predation rates and whether these factors differed with crayfish size and habitat depth. We sampled available food resources (detritus and invertebrates) and shelter as rock substrate in deep (>50 cm) and shallow (<30 cm) habitats. We used an enclosure-exclosure experiment to examine the effects of water depth and crayfish size on crayfish biomass and survival, and to determine whether these factors affected silt accrual, algal abundance (chlorophyll a [chl a]), and detritus and invertebrate biomass (g ash-free dry mass) differently from enclosures without crayfish. We conducted tethering experiments to assess predation on small (13-17 mm carapace length [CL]) and large (23-30 mm CL) Orconectes marchandi and to determine whether predation rates differed with water depth. Invertebrate biomass was significantly greater in shallow water than in deep water, whereas detritus biomass did not differ significantly between depths. Cobble was significantly more abundant in shallow than in deep water. Depth and crayfish size had a significant interactive effect on change in size of enclosed crayfish when CL was used as a measure of size but not when biomass was used as a measure of size. CL of small crayfish increased significantly more in enclosures in shallow than in deep water, but CL of large crayfish changed very little at either depth. Silt, chl a, and detritus biomass were significantly lower on tiles in large- than in small- and no-crayfish enclosures, and invertebrate biomass was significantly lower in large- than in no-crayfish enclosures. Significantly more crayfish were consumed in deep than in shallow water regardless of crayfish size. Our results suggest that predation and resource availability might influence the depth distribution of small and large crayfish. Small crayfish grew faster in shallow habitats where they might have had a fitness advantage caused by high prey availability and reduced predation risk. Size-dependent reduction of silt by crayfish might influence benthic habitats where large crayfish are abundant. ?? 2007 by The North American Benthological Society.

Mycosporine-like amino acids in the zooxanthella-ciliate symbiosis Maristentor dinoferus.

PubMed

Sommaruga, Ruben; Whitehead, Kenia; Shick, J Malcolm; Lobban, Christopher S

2006-06-01

Coral reef organisms living in mutualistic symbioses with phototrophic dinoflagellates are widespread in shallow UV-transparent waters. Maristentor dinoferus is a recently discovered species of marine benthic ciliate that hosts symbiotic dinoflagellates of the genus Symbiodinium. In this study, we tested this ciliate for the occurrence of mycosporine-like amino acids, a family of secondary metabolites that minimize damage from exposure to solar UV radiation by direct screening. Using high-performance liquid chromatography and liquid chromatography coupled to mass spectrometry, five mycosporine-like amino acids (shinorine, palythenic acid, palythine, mycosporine-2-glycine, and porphyra-334) were identified in aqueous methanolic extracts of the symbiosis. This is the first report of mycosporine-like amino acids in a marine ciliate.

Fluid Lensing, Applications to High-Resolution 3D Subaqueous Imaging & Automated Remote Biosphere Assessment from Airborne and Space-borne Platforms

NASA Astrophysics Data System (ADS)

Chirayath, V.

2014-12-01

Fluid Lensing is a theoretical model and algorithm I present for fluid-optical interactions in turbulent flows as well as two-fluid surface boundaries that, when coupled with an unique computer vision and image-processing pipeline, may be used to significantly enhance the angular resolution of a remote sensing optical system with applicability to high-resolution 3D imaging of subaqueous regions and through turbulent fluid flows. This novel remote sensing technology has recently been implemented on a quadcopter-based UAS for imaging shallow benthic systems to create the first dataset of a biosphere with unprecedented sub-cm-level imagery in 3D over areas as large as 15 square kilometers. Perturbed two-fluid boundaries with different refractive indices, such as the surface between the ocean and air, may be exploited for use as lensing elements for imaging targets on either side of the interface with enhanced angular resolution. I present theoretical developments behind Fluid Lensing and experimental results from its recent implementation for the Reactive Reefs project to image shallow reef ecosystems at cm scales. Preliminary results from petabyte-scale aerial survey efforts using Fluid Lensing to image at-risk coral reefs in American Samoa (August, 2013) show broad applicability to large-scale automated species identification, morphology studies and reef ecosystem characterization for shallow marine environments and terrestrial biospheres, of crucial importance to understanding climate change's impact on coastal zones, global oxygen production and carbon sequestration.

A Possible Late Paleocene-Early Eocene Ocean Acidification Event Recoded in the Adriatic Carbonate Platform

NASA Astrophysics Data System (ADS)

Weiss, A.; Martindale, R. C.; Kosir, A.; Oefinger, J.

2017-12-01

The Paleocene-Eocene Thermal Maximum (PETM) event ( 56.3 Ma) was a period of massive carbon release into the Earth system, resulting in significant shifts in ocean chemistry. It has been proposed that ocean acidification - a decrease in the pH and carbonate saturation state of the water as a result of dissolved carbon dioxide in sea water - occurred in both the shallow and deep marine realms. Ocean acidification would have had a devastating impact on the benthic ecosystem, and has been proposed as the cause of decreased carbonate deposition in marine sections and coral reef collapse during the late Paleocene. To date, however, the only physical evidence of Paleocene-Eocene ocean acidification has been shown for offshore sites (i.e., a shallow carbonate compensation depth), but isotope analysis (i.e. B, I/Ca) suggests that acidification occurred in the shallow shelves as well. Several sites in the Kras region of Slovenia, has been found to contain apparent erosion surfaces coeval with the Paleocene-Eocene Boundary. We have investigated these potentially acidified horizons using petrography, stable carbon isotopes, cathodoluminescence, and elemental mapping. These datasets will inform whether the horizons formed by seafloor dissolution in an acidified ocean, or are due to subaerial exposure, or burial diagenesis (i.e. stylotization). Physical erosion and diagenesis can easily be ruled out based on field relationships and petrography, but the other potential causes must be analyzed more critically.

Community Structure of Macrobiota and Environmental Parameters in Shallow Water Hydrothermal Vents off Kueishan Island, Taiwan

PubMed Central

Chan, Benny Kwok Kan; Wang, Teng-Wei; Chen, Pin-Chen; Lin, Chia-Wei; Chan, Tin-Yam; Tsang, Ling Ming

2016-01-01

Hydrothermal vents represent a unique habitat in the marine ecosystem characterized with high water temperature and toxic acidic chemistry. Vents are distributed at depths ranging from a few meters to several thousand meters. The biological communities of shallow-water vents have, however, been insufficiently studied in most biogeographic areas. We attempted to characterize the macrofauna and macroflora community inhabiting the shallow-water vents off Kueishan Island, Taiwan, to identify the main abiotic factors shaping the community structure and the species distribution. We determined that positively buoyant vent fluid exhibits a more pronounced negative impact to species on the surface water than on the bottom layer. Species richness increased with horizontal distance from the vent, and continuing for a distance of 2000 m, indicating that the vent fluid may exert a negative impact over several kilometers. The community structure off Kueishan Island displayed numerous transitions along the horizontal gradient, which were broadly congruent with changes in environmental conditions. Combination of variation in Ca2+, Cl-, temperature, pH and depth were revealed to show the strongest correlation with the change in benthic community structure, suggesting multiple factors of vent fluid were influencing the associated fauna. Only the vent crabs of Kueishan Island may have an obligated relationship with vents and inhabit the vent mouths because other fauna found nearby are opportunistic taxa that are more tolerant to acidic and toxic environments. PMID:26849440

Fish depth distributions in the Lower Mississippi River

USGS Publications Warehouse

Killgore, K. J.; Miranda, Leandro E.

2014-01-01

A substantial body of literature exists about depth distribution of fish in oceans, lakes and reservoirs, but less is known about fish depth distribution in large rivers. Most of the emphasis on fish distributions in rivers has focused on longitudinal and latitudinal spatial distributions. Knowledge on depth distribution is necessary to understand species and community habitat needs. Considering this void, our goal was to identify patterns in fish benthic distribution along depth gradients in the Lower Mississippi River. Fish were collected over 14 years in depths down to 27 m. Fish exhibited non-random depth distributions that varied seasonally and according to species. Species richness was highest in shallow water, with about 50% of the 62 species detected no longer collected in water deeper than 8 m and about 75% no longer collected in water deeper than 12 m. Although richness was highest in shallow water, most species were not restricted to shallow water. Rather, most species used a wide range of depths. A weak depth zonation occurred, not as strong as that reported for deep oceans and lakes. Larger fish tended to occur in deeper water during the high-water period of an annual cycle, but no correlation was evident during the low-water period. The advent of landscape ecology has guided river research to search for spatial patterns along the length of the river and associated floodplains. Our results suggest that fish assemblages in large rivers are also structured vertically. 

Applying Tafkaa For Atmospheric Correction of Aviris Over Coral Ecosystems In The Hawaiian Islands

NASA Technical Reports Server (NTRS)

Goodman, James A.; Montes, Marcos J.; Ustin, Susan L.

2004-01-01

Growing concern over the health of coastal ecosystems, particularly coral reefs, has produced increased interest in remote sensing as a tool for the management and monitoring of these valuable natural resources. Hyperspectral capabilities show promising results in this regard, but as yet remain somewhat hindered by the technical and physical issues concerning the intervening water layer. One such issue is the ability to atmospherically correct images over shallow aquatic areas, where complications arise due to varying effects from specular reflection, wind blown surface waves, and reflectance from the benthic substrate. Tafkaa, an atmospheric correction algorithm under development at the U.S. Naval Research Laboratory, addresses these variables and provides a viable approach to the atmospheric correction issue. Using imagery from the Advanced Visible InfraRed Imaging Spectrometer (AVIRIS) over two shallow coral ecosystems in the Hawai ian Islands, French Frigate Shoals and Kane ohe Bay, we first demonstrate how land-based atmospheric corrections can be limited in such an environment. We then discuss the input requirements and underlying algorithm concepts of Tafkaa and conclude with examples illustrating the improved performance of Tafkaa using the same AVIRIS images.

A Hierarchical Classification of Benthic Biodiversity and Assessment of Protected Areas in the Southern Ocean

PubMed Central

Douglass, Lucinda L.; Turner, Joel; Grantham, Hedley S.; Kaiser, Stefanie; Constable, Andrew; Nicoll, Rob; Raymond, Ben; Post, Alexandra; Brandt, Angelika; Beaver, Daniel

2014-01-01

An international effort is underway to establish a representative system of marine protected areas (MPAs) in the Southern Ocean to help provide for the long-term conservation of marine biodiversity in the region. Important to this undertaking is knowledge of the distribution of benthic assemblages. Here, our aim is to identify the areas where benthic marine assemblages are likely to differ from each other in the Southern Ocean including near-shore Antarctica. We achieve this by using a hierarchical spatial classification of ecoregions, bathomes and environmental types. Ecoregions are defined according to available data on biogeographic patterns and environmental drivers on dispersal. Bathomes are identified according to depth strata defined by species distributions. Environmental types are uniquely classified according to the geomorphic features found within the bathomes in each ecoregion. We identified 23 ecoregions and nine bathomes. From a set of 28 types of geomorphic features of the seabed, 562 unique environmental types were classified for the Southern Ocean. We applied the environmental types as surrogates of different assemblages of biodiversity to assess the representativeness of existing MPAs. We found that 12 ecoregions are not represented in MPAs and that no ecoregion has their full range of environmental types represented in MPAs. Current MPA planning processes, if implemented, will substantially increase the representation of environmental types particularly within 8 ecoregions. To meet internationally agreed conservation goals, additional MPAs will be needed. To assist with this process, we identified 107 spatially restricted environmental types, which should be considered for inclusion in future MPAs. Detailed supplementary data including a spatial dataset are provided. PMID:25032993

Detecting modification of biomedical events using a deep parsing approach

PubMed Central

2012-01-01

Background This work describes a system for identifying event mentions in bio-molecular research abstracts that are either speculative (e.g. analysis of IkappaBalpha phosphorylation, where it is not specified whether phosphorylation did or did not occur) or negated (e.g. inhibition of IkappaBalpha phosphorylation, where phosphorylation did not occur). The data comes from a standard dataset created for the BioNLP 2009 Shared Task. The system uses a machine-learning approach, where the features used for classification are a combination of shallow features derived from the words of the sentences and more complex features based on the semantic outputs produced by a deep parser. Method To detect event modification, we use a Maximum Entropy learner with features extracted from the data relative to the trigger words of the events. The shallow features are bag-of-words features based on a small sliding context window of 3-4 tokens on either side of the trigger word. The deep parser features are derived from parses produced by the English Resource Grammar and the RASP parser. The outputs of these parsers are converted into the Minimal Recursion Semantics formalism, and from this, we extract features motivated by linguistics and the data itself. All of these features are combined to create training or test data for the machine learning algorithm. Results Over the test data, our methods produce approximately a 4% absolute increase in F-score for detection of event modification compared to a baseline based only on the shallow bag-of-words features. Conclusions Our results indicate that grammar-based techniques can enhance the accuracy of methods for detecting event modification. PMID:22595089

Biogeochemical responses of shallow coastal lagoons to Climate Change

NASA Astrophysics Data System (ADS)

Brito, A.; Newton, A.; Tett, P.; Fernandes, T.

2009-04-01

The importance of climate change and global warming in the near future is becoming consensual within the scientific community (e.g. Kerr et al., 2008; Lloret et al., 2008). The surface temperature and sea level have increased during the last few years in the northern hemisphere (IPCC, 2007). Predictions for future changes include an increase of surface temperature and sea level for Europe. Moreover, the global warming phenomenon will also change the hydrological cycle and increase precipitation in northern and central Europe (IPCC, 2007). Sea level rise already threatens to overwhelm some lagoons, such as Venice and Moroccan lagoons (Snoussi et al., 2008). Shallow coastal lagoons are some of the most vulnerable systems that will be impacted by these changes (Eisenreich, 2005). Environmental impacts on coastal lagoons include an increase of water turbidity and therefore light attenuation. If these effects are strong enough, the lighted bottoms of shallow lagoons may loose a significant part of the benthic algal community. These communities are highly productive and are essential to control nutrient dynamics of the system by uptaking large amounts of nutrients both from the water column and from the sediments. A decrease in benthic algal communities and photosynthetic oxygen production will also contribute to increasing the vulnerability of the lagoons to hypoxia and anoxia. The flux of nutrients such as phosphate from the sediments may increase dramatically, further disrupting the nutrient balance and condition and promoting cyanobacterial blooms. Microbial activity is temperature dependent, therefore, the increase of temperature will increase the concentrations of ammonium within sediments. The release of phosphate and silicate will also increase with temperature. Coastal lagoons are valuable ecosystems and may be severely impacted, both ecologically and economically, by global change. Shallow coastal lagoons should be considered as sentinel systems and should be carefully monitored so that appropriate responses can be timely to mitigate the impacts from global change. References: Eisenreich, S.J. (2005). Climate Change and the European Water Dimension - A report to the European Water Directors. Institute for Environment and Sustainability, European Comission-Joint Research Centre. Ispra, Italy. 253pp. Kerr, R. (2008). Global warming throws some curves in the Atlantic Ocean. Science, 322, 515. IPCC (2007). Climate Change 2007: The Physical Science Basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change [Solomon, S., Qin, D., Manning, M., Chen, Z., Marquis, M., Averyt, K., Tignor, M., Miller, H. (eds.)]. Cambridge University Press. Cambridge, United Kingdom and New York, NY, USA, 996pp. Lloret, J., Marín, A., Marín-Guirao, L. (2008). Is coastal lagoon eutrophication likely to be aggravated by global climate change? Estuarine, Coastal and Shelf Science, 78, 403-412. Snoussi, M., Ouchani, T., Niazi, S. (2008). Vulnerability assessment of the impact of sea-level rise and flooding on the Moroccan coast: The case of the Mediterranean eastern zone. Estuarine, Coastal and Shelf Science, 77, 206-213.

Planktic foraminiferal response to the Latest Danian Event in the Pacific Ocean (ODP Site 1210)

NASA Astrophysics Data System (ADS)

Jehle, Sofie; Bornemann, André; Deprez, Arne; Speijer, Robert

2015-04-01

During the Paleocene the marine ecosystem was disturbed by several transient climate events, e.g. the Dan-C2 (65.2 Ma), the Latest Danian Event (LDE, 61.75 Ma), and most known, the Paleocene-Eocene Thermal Maximum (PETM, 56 Ma). So far the LDE (or "Top Chron 27n Event") has rarely been studied in deep-sea sites with respect to the evolution and the paleoecology of planktic foraminifera. The event has already been described from Zumaia/Spain, Bjala/Bulgaria, Egypt, Shatsky Rise and Walvis Ridge. In the deep-sea the LDE is usually characterized by two distinctive Fe peaks in XRF core scanning data, paralleled by a prominent (~0.7 ‰) negative δ13C excursion (CIE) in benthic foraminifera (Westerhold et al., 2008, 2011). Benthic foraminiferal δ18O data from nearby ODP Site 1209 suggest a bottom-water temperature rise of ~2°C accompanying the negative CIE. Thus, the LDE has been considered as a further potential Paleocene "hyperthermal". Here we present data from ODP Site 1210 of the biotic response (planktic foraminifera assemblages), carbonate preservation as well as δ18O and δ13C isotope signals of the surface, subsurface and benthic taxa covering a time span of about 900 kyr around the LDE. Among others, it is mainly investigated to what extent the LDE influences the ocean ecology and especially the surface waters. Trends of both δ18O and δ13C of planktic and benthic foraminifera show negative shifts at the onset of the LDE. A 0.6‰ drop within 100 ky in planktic δ18O data suggest a temperature rise of ~2.5°C, whereas benthic foraminifera bottom water temperatures confirm a ~2°C rise like measured at Site 1209. δ13C variation is more abrupt and pronounced than the δ18O shift at the base of the LDE. The decreasing δ13C gradient between surface and subsurface dwelling foraminifera suggests a weaker and or shallower thermocline. Thermocline dwelling asymbiotic Parasubbotina rise in abundance simultaneously to the decrease in the δ13C gradient which may suggest that this taxon benefits from a shallower thermocline and, thus, increased stratification. After the event, photosymbiotic activity in surface dwellers like Morozovella might have been boosted due to less competitive pressure. Minor dissolution according to planktic foraminiferal fragmentation, P/B-ratios and coarse fraction is considered to be present during the LDE. This observation is consistent with a decrease in the total CaCO3 record, which drops from ~95% to 85%, while planktic foraminifera suffer a strong decrease in abundance from ~20,000 to ~1,000 speciemn per gram during the event. Results from Non-metric Multidimentional Scaling suggest distinct faunal changes between before, during and after the LDE. Prominent changes are especially the disappearance of Praemurica spp. shortly before or with the onset of the event, whereas Igorina albeari increases from 'few' to 'abundant' within the first Fe LDE peak. Morozovella angulata follows a slow but constant rise, while M. praeangulata has the opposite trend. Comparable obervations were done on genus level at the Tethys Ocean, Tunisia (Guasti et al., 2006). References Bornemann, A., Schulte, P., Sprong, J., Steurbaut, E., Youssef, M., Speijer, R.P., 2009. Latest Danian carbon isotope anomaly and associated environmental change in the southern Tethys (Nile Basin, Egypt). Journal of the Geological Society 166, 1135-1142. Guasti, E., Speijer, R.P., Brinkhuis, H., Smit, J., Steurbaut, E., 2006. Paleoenvironmental change at the Danian-Selandian transition in Tunisia: Foraminifera, organic-walled dinoflagellate cyst and calcareous nannofossil records. Marine Micropaleontology 59, 210-229. Westerhold, T., Röhl, U., Raffi, I., Fornaciari, E., Monechi, S., Reale, V., Bowles, J., Evans, H.F., 2008. Astronomical calibration of the Paleocene time. Palaeogegr. Palaeoclimatol. Palaeoecol. 257, 377-403. Westerhold, T., Röhl, U., Donner, B., McCarren, H.K., Zachos, J.C., 2011. A complete high-resolution Paleocene benthic stable isotope record for the central Pacific (ODP Site 1209). Paleoceanography 26, doi: 10.1029/2010pa002092.

Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil)

PubMed Central

Walter, Juline M.; Tschoeke, Diogo A.; Meirelles, Pedro M.; de Oliveira, Louisi; Leomil, Luciana; Tenório, Márcio; Valle, Rogério; Salomon, Paulo S.; Thompson, Cristiane C.; Thompson, Fabiano L.

2016-01-01

Turfs are widespread assemblages (consisting of microbes and algae) that inhabit reef systems. They are the most abundant benthic component in the Abrolhos reef system (Brazil), representing greater than half the coverage of the entire benthic community. Their presence is associated with a reduction in three-dimensional coral reef complexity and decreases the habitats available for reef biodiversity. Despite their importance, the taxonomic and functional diversity of turfs remain unclear. We performed a metagenomics and pigments profile characterization of turfs from the Abrolhos reefs. Turf microbiome primarily encompassed Proteobacteria (mean 40.57% ± s.d. 10.36, N = 1.548,192), Cyanobacteria (mean 35.04% ± s.d. 15.5, N = 1.337,196), and Bacteroidetes (mean 11.12% ± s.d. 4.25, N = 424,185). Oxygenic and anoxygenic phototrophs, chemolithotrophs, and aerobic anoxygenic phototrophic (AANP) bacteria showed a conserved functional trait of the turf microbiomes. Genes associated with oxygenic photosynthesis, AANP, sulfur cycle (S oxidation, and DMSP consumption), and nitrogen metabolism (N2 fixation, ammonia assimilation, dissimilatory nitrate and nitrite ammonification) were found in the turf microbiomes. Principal component analyses of the most abundant taxa and functions showed that turf microbiomes differ from the other major Abrolhos benthic microbiomes (i.e., corals and rhodoliths) and seawater. Taken together, these features suggest that turfs have a homogeneous functional core across the Abrolhos Bank, which holds diverse microbial guilds when comparing with other benthic organisms. PMID:27548380

Abyssal hills: Influence of topography on benthic foraminiferal assemblages

NASA Astrophysics Data System (ADS)

Stefanoudis, Paris V.; Bett, Brian J.; Gooday, Andrew J.

2016-11-01

Abyssal plains, often thought of as vast flat areas, encompass a variety of terrains including abyssal hills, features that constitute the single largest landscape type on Earth. The potential influence on deep-sea benthic faunas of mesoscale habitat complexity arising from the presence of abyssal hills is still poorly understood. To address this issue we focus on benthic foraminifera (testate protists) in the >150-μm fraction of Megacorer samples (0-1 cm layer) collected at five different sites in the area of the Porcupine Abyssal Plain Sustained Observatory (NE Atlantic, 4850 m water depth). Three sites are located on the tops of small abyssal hills (200-500 m elevation) and two on the adjacent abyssal plain. We examined benthic foraminiferal assemblage characteristics (standing stock, diversity, composition) in relation to seafloor topography (hills vs. plain). Density and rarefied diversity were not significantly different between the hills and the plain. Nevertheless, hills do support a higher species density (i.e. species per unit area), a distinct fauna, and act to increase the regional species pool. Topographically enhanced bottom-water flows that influence food availability and sediment type are suggested as the most likely mechanisms responsible for these differences. Our findings highlight the potential importance of mesoscale heterogeneity introduced by relatively modest topography in regulating abyssal foraminiferal diversity. Given the predominance of abyssal hill terrain in the global ocean, we suggest the need to include faunal data from abyssal hills in assessments of abyssal ecology.

Insights on geochemical cycling of U, Re and Mo from seasonal sampling in Boston Harbor, Massachusetts, USA

USGS Publications Warehouse

Morford, J.L.; Martin, W. R.; Kalnejais, Linda H.; Francois, R.; Bothner, Michael H.; Karle, I.-M.

2007-01-01

This study examined the removal of U, Mo, and Re from seawater by sedimentary processes at a shallow-water site with near-saturation bottom water O2 levels (240–380 μmol O2/L), very high organic matter oxidation rates (annually averaged rate is 880 μmol C/cm2/y), and shallow oxygen penetration depths (4 mm or less throughout the year). Under these conditions, U, Mo, and Re were removed rapidly to asymptotic pore water concentrations of 2.2–3.3 nmol/kg (U), 7–13 nmol/kg (Mo), and 11–14 pmol/kg (Re). The depth order in which the three metals were removed, determined by fitting a diffusion-reaction model to measured profiles, was Re < U < Mo. Model fits also suggest that the Mo profiles clearly showed the presence of a near-interface layer in which Mo was added to pore waters by remineralization of a solid phase. The importance of this solid phase source of pore water Mo increased from January to October as the organic matter oxidation rate increased, bottom water O2 decreased, and the O2 penetration depth decreased. Experiments with in situ benthic flux chambers generally showed fluxes of U and Mo into the sediments. However, when the overlying water O2 concentration in the chambers was allowed to drop to very low levels, Mn and Fe were released to the overlying water along with the simultaneous release of Mo and U. These experiments suggest that remineralization of Mn and/or Fe oxides may be a source of Mo and perhaps U to pore waters, and may complicate the accumulation of U and Mo in bioturbated sediments with high organic matter oxidation rates and shallow O2 penetration depths.Benthic chamber experiments including the nonreactive solute tracer, Br−, indicated that sediment irrigation was very important to solute exchange at the study site. The enhancement of sediment–seawater exchange due to irrigation was determined for the nonreactive tracer (Br−), TCO2, NH4+">NH4+, U and Mo. The comparisons between these solutes showed that reactions within and around the burrows were very important for modulating the Mo flux, but less important for U. The effect of these reactions on Mo exchange was highly variable, enhancing Mo (and, to a lesser extent, U) uptake at times of relatively modest irrigation, but inhibiting exchange when irrigation rates were faster. These results reinforce the observation that Mo can be released to and removed from pore waters via sedimentary reactions.The removal rate of U and Mo from seawater by sedimentary reactions was found to agree with the rate of accumulation of authigenic U and Mo in the solid phase. The fluxes of U and Mo determined by in situ benthic flux chamber measurements were the largest that have been measured to date. These results confirm that removal of redox-sensitive metals from continental margin sediments underlying oxic bottom water is important, and suggest that continental margin sediments play a key role in the marine budgets of these metals.

Lithostratigraphic description, sedimentological characteristics and depositional environments of rocks penetrated by Illela borehole, Sokoto Basin, NW Nigeria: A connection between Gulf of Guinea Basins

NASA Astrophysics Data System (ADS)

Toyin, A.; Adekeye, O. A.; Bale, R. B.; Sanni, Z. J.; Jimoh, O. A.

2016-09-01

The basal unit of the succession in the Illela borehole belongs to the Dange Formation comprising thick calcareous and variably coloured dark-greyish shale of 36.30 m thick which is overlain by a 31.44 m thick limestone of Kalambaina Formation with 1.7 m thick shaly-limestone inclusive. The uppermost part of the section belongs to the Gwandu Formation which has intercalation of silty-clay, muddy siltstones with well lithified ironstone capping the borehole section. The limestone/carbonate microfacie as deduced from their salient lithologic, sedimentologic and paleontologic features are comparable to standard microfacie (SMF) types 9 and 10, i.e. bioclastic wackestone/bioclastic micrite and packstone-wackestone respectively. Diagenetically, syndepositional and early diagenesis have taken place particularly cementation and replacement in the carbonate rocks and these have greatly affected the reservoir potential negatively. The matrix/grain relationships indicate a shallow marine environment of deposition. The borehole section is delineated into upper foraminifera and lower ostracod biostratigraphic units as no formal biostratigraphic zonation could be attempted due to low diversity of both benthic foraminifera, marine ostracods and the absence of planktonic foraminifera. The similarity of the ostracod assemblages between this study area, Illela borehole, West Africa, North Africa (Libya), Mali and Niger Republic) and South-Western Nigeria (West Africa) suggests that a marine connection exists between the Gulf of Guinea and the Sokoto Basin via the area occupied by the River Niger during the Paleocene.

Multi- and hyperspectral remote sensing of tropical marine benthic habitats

NASA Astrophysics Data System (ADS)

Mishra, Deepak R.

Tropical marine benthic habitats such as coral reef and associated environments are severely endangered because of the environmental degradation coupled with hurricanes, El Nino events, coastal pollution and runoff, tourism, and economic development. To monitor and protect this diverse environment it is important to not only develop baseline maps depicting their spatial distribution but also to document their changing conditions over time. Remote sensing offers an important means of delineating and monitoring coral reef ecosystems. Over the last twenty years the scientific community has been investigating the use and potential of remote sensing techniques to determine the conditions of the coral reefs by analyzing their spectral characteristics from space. One of the problems in monitoring coral reefs from space is the effect of the water column on the remotely sensed signal. When light penetrates water its intensity decreases exponentially with increasing depth. This process, known as water column attenuation, exerts a profound effect on remotely sensed data collected over water bodies. The approach presented in this research focuses on the development of semi-analytical models that resolves the confounding influence water column attenuation on substrate reflectance to characterize benthic habitats from high resolution remotely sensed imagery on a per-pixel basis. High spatial resolution satellite and airborne imagery were used as inputs in the models to derive water depth and water column optical properties (e.g., absorption and backscattering coefficients). These parameters were subsequently used in various bio-optical algorithms to deduce bottom albedo and then to classify the benthos, generating a detailed map of benthic habitats. IKONOS and QuickBird multispectral satellite data and AISA Eagle hyperspectral airborne data were used in this research for benthic habitat mapping along the north shore of Roatan Island, Honduras. The AISA Eagle classification was consistently more accurate (84%) including finer definition of geomorphological features than the satellite sensors. IKONOS (81%) and QuickBird (81%) sensors showed similar accuracy to AISA, however, such similarity was only reached at the coarse classification levels of 5 and 6 habitats. These results confirm the potential of an effective combination of high spectral and spatial resolution sensor, for accurate benthic habitat mapping.

Development and application of a new comprehensive image-based classification scheme for coastal and benthic environments along the southeast Florida continental shelf

NASA Astrophysics Data System (ADS)

Makowski, Christopher

The coastal (terrestrial) and benthic environments along the southeast Florida continental shelf show a unique biophysical succession of marine features from a highly urbanized, developed coastal region in the north (i.e. northern Miami-Dade County) to a protective marine sanctuary in the southeast (i.e. Florida Keys National Marine Sanctuary). However, the establishment of a standard bio-geomorphological classification scheme for this area of coastal and benthic environments is lacking. The purpose of this study was to test the hypothesis and answer the research question of whether new parameters of integrating geomorphological components with dominant biological covers could be developed and applied across multiple remote sensing platforms for an innovative way to identify, interpret, and classify diverse coastal and benthic environments along the southeast Florida continental shelf. An ordered manageable hierarchical classification scheme was developed to incorporate the categories of Physiographic Realm, Morphodynamic Zone, Geoform, Landform, Dominant Surface Sediment, and Dominant Biological Cover. Six different remote sensing platforms (i.e. five multi-spectral satellite image sensors and one high-resolution aerial orthoimagery) were acquired, delineated according to the new classification scheme, and compared to determine optimal formats for classifying the study area. Cognitive digital classification at a nominal scale of 1:6000 proved to be more accurate than autoclassification programs and therefore used to differentiate coastal marine environments based on spectral reflectance characteristics, such as color, tone, saturation, pattern, and texture of the seafloor topology. In addition, attribute tables were created in conjugation with interpretations to quantify and compare the spatial relationships between classificatory units. IKONOS-2 satellite imagery was determined to be the optimal platform for applying the hierarchical classification scheme. However, each remote sensing platform had beneficial properties depending on research goals, logistical restrictions, and financial support. This study concluded that a new hierarchical comprehensive classification scheme for identifying coastal marine environments along the southeast Florida continental shelf could be achieved by integrating geomorphological features with biological coverages. This newly developed scheme, which can be applied across multiple remote sensing platforms with GIS software, establishes an innovative classification protocol to be used in future research studies.

Fusion of shallow and deep features for classification of high-resolution remote sensing images

NASA Astrophysics Data System (ADS)

Gao, Lang; Tian, Tian; Sun, Xiao; Li, Hang

2018-02-01

Effective spectral and spatial pixel description plays a significant role for the classification of high resolution remote sensing images. Current approaches of pixel-based feature extraction are of two main kinds: one includes the widelyused principal component analysis (PCA) and gray level co-occurrence matrix (GLCM) as the representative of the shallow spectral and shape features, and the other refers to the deep learning-based methods which employ deep neural networks and have made great promotion on classification accuracy. However, the former traditional features are insufficient to depict complex distribution of high resolution images, while the deep features demand plenty of samples to train the network otherwise over fitting easily occurs if only limited samples are involved in the training. In view of the above, we propose a GLCM-based convolution neural network (CNN) approach to extract features and implement classification for high resolution remote sensing images. The employment of GLCM is able to represent the original images and eliminate redundant information and undesired noises. Meanwhile, taking shallow features as the input of deep network will contribute to a better guidance and interpretability. In consideration of the amount of samples, some strategies such as L2 regularization and dropout methods are used to prevent over-fitting. The fine-tuning strategy is also used in our study to reduce training time and further enhance the generalization performance of the network. Experiments with popular data sets such as PaviaU data validate that our proposed method leads to a performance improvement compared to individual involved approaches.

A Latest Glacial and Holocene Record From Medicine Lake, Siskiyou County, California: Preliminary Diatom, Pollen, and Sediment Data

NASA Astrophysics Data System (ADS)

Starratt, S. W.; Barron, J. A.; Kneeshaw, T.; Phillips, L.; Lowenstern, J.; Wanket, J. A.

2002-12-01

Medicine Lake is a small (165 ha), relatively shallow (average 7.3 m), medium- altitude (2,036 m) lake located within the summit caldera of Medicine Lake volcano, a dormant Quaternary shield volcano located in the southern Cascade Range. During September 1999 and 2000, high-resolution bathymetry, seismic-reflection profiles, and sediment cores were collected from the lake. Twenty six samples from core B100NC-1 (water depth 12.6 m; length 226 cm) were analyzed for physical properties, sediment grain size, diatoms, pollen, and total organic carbon (TOC). Using both 14C (AMS) dating and tephrochronology, the sediments at the bottom of the core are estimated to be 11,000 cal yr B.P., thus yielding an estimated average sedimentation rate of about 21 cm/1,000 yr. The lowermost part of the core (226 cm - ~200 cm) records the transition from glacial to interglacial conditions. During the period from about 11,000-7,200 cal yr B.P., lake level fluctuated between deeper oligotrophic conditions with a diatom flora dominated by Cyclotella spp. and shallower intervals with a diverse benthic flora. The relative low abundance (10-15%) of Abies (fir) pollen and relative high abundance (30-40%) of Artemesia (sagebrush) pollen in this interval suggest drier than present-day conditions. The lowest part of this interval (226 cm - 210 cm) is almost devoid of Cyclotella and may represent an ice-covered lake in which only a small benthic flora could exist around the margins of the lake where light penetration was the greatest. The sediments in this interval are relatively low in TOC and are dominated by glacial flour. From about 7,200 cal yr B.P. to the present, conditions have fluctuated between higher lake levels (three intervals) that are dominated by Cyclotella with a reduced number and diversity of benthic taxa, and lower lake levels (two intervals) during which the abundances of Cyclotella decrease to less than 10%. Relative values of Abies and Pinus (pine) pollen are higher during high lake levels, whereas pollen of aquatic taxa (primarily Isoetes [quillwort]) increases in significance at lower lake levels. Total organic carbon is higher during high stands and lower during low stands. Comparison with recently published multi-proxy studies of the Lake Tahoe-Truckee River-Pyramid Lake drainage system suggest that some of the changes in lake level observed at Medicine Lake between about 7,500-4,500 cal yr B.P. may be regional in nature, while fluctuations over the last 4,500 yr probably reflect conditions affecting only the local watershed.

Even-Aged Management and Landslide Inventory, Jackson Demonstration State Forest, Mendocino County, California

Treesearch

Julie A. Bawcom

2007-01-01

Tree removal associated with clearcutting in a coastal redwood forest does not alone initiate numerous shallow landslides that deliver large quantities of sediment to watercourses. landslide inventory focused on the relationship between vegetation removal in predominantly second-growth redwood forest and shallow landslides. Deep-seated dormant landslide features were...

Production of High Amounts of Hepatotoxin Nodularin and New Protease Inhibitors Pseudospumigins by the Brazilian Benthic Nostoc sp. CENA543

PubMed Central

Jokela, Jouni; Heinilä, Lassi M. P.; Shishido, Tânia K.; Wahlsten, Matti; Fewer, David P.; Fiore, Marli F.; Wang, Hao; Haapaniemi, Esa; Permi, Perttu; Sivonen, Kaarina

2017-01-01

Nostoc is a cyanobacterial genus, common in soils and a prolific producer of natural products. This research project aimed to explore and characterize Brazilian cyanobacteria for new bioactive compounds. Here we report the production of hepatotoxins and new protease inhibitors from benthic Nostoc sp. CENA543 isolated from a small, shallow, saline-alkaline lake in the Nhecolândia, Pantanal wetland area in Brazil. Nostoc sp. CENA543 produces exceptionally high amounts of nodularin-R. This is the first free-living Nostoc that produces nodularin at comparable levels as the toxic, bloom-forming, Nodularia spumigena. We also characterized pseudospumigins A–F, which are a novel family of linear tetrapeptides. Pseudospumigins are structurally related to linear tetrapeptide spumigins and aeruginosins both present in N. spumigena but differ in respect to their diagnostic amino acid, which is Ile/Leu/Val in pseudospumigins, Pro/mPro in spumigins, and Choi in aeruginosins. The pseudospumigin gene cluster is more similar to the spumigin biosynthetic gene cluster than the aeruginosin gene cluster. Pseudospumigin A inhibited trypsin (IC50 4.5 μM after 1 h) in a similar manner as spumigin E from N. spumigena but was almost two orders of magnitude less potent. This study identifies another location and environment where the hepatotoxic nodularin has the potential to cause the death of eukaryotic organisms. PMID:29062311

Macrobenthic diversity and sediment-water exchanges of oxygen and ammonium: Example of two subtidal communities of the eastern English Channel

NASA Astrophysics Data System (ADS)

Tous Rius, Armonie; Denis, Lionel; Dauvin, Jean-Claude; Spilmont, Nicolas

2018-06-01

In organic-rich shallow habitats, benthic macrofauna is known to play a major role in the geochemical functioning of surficial sediments through its metabolism, as well as its bioirrigation and/or bioturbation activity. In this paper, the effects of benthic macrofauna on metabolic fluxes at the sediment-water interface were studied at four dates, from winter to late summer, on two major macrobenthic communities of the eastern English Channel (macrotidal system): the fine sand Abra alba community (2 stations) and the sandy gravel Ophiothrix fragilis community (1 station). Oxygen and ammonium fluxes showed temporal changes that could be attributed to the variation of sea water temperature. Once the effect of temperature removed (using Q10 = 2.5), the average fauna mediated fluxes (FFauna) represented respectively 77% and 76% of average total fluxes. Considering the whole dataset, species number and biomass showed a significant correlation with fauna mediated fluxes of O2 and NH4+, while the relationships with abundance were not significant. The species composition of the community might influence ecosystem functioning, but in the present study, functional groups have a very poor relationship with FFauna (O2) and FFauna (NH4+). Despite the presence of engineer species, establishing general and simple rules to link macrofaunal parameters to functional attributes remains very difficult, suggesting that communities rather followed the idiosyncrasy and rivet hypothesis.

Impacts of the 2011 Tsunami on Sediment Characteristics and Macrozoobenthic Assemblages in a Shallow Eutrophic Lagoon, Sendai Bay, Japan.

PubMed

Kanaya, Gen; Suzuki, Takao; Kikuchi, Eisuke

2015-01-01

A huge tsunami is one of the greatest disturbance events in coastal benthic communities, although the ecological consequences are not fully understood. Here we examined the tsunami-induced changes in the sediment environment and macrozoobenthic assemblage in a eutrophic brackish lagoon in eastern Japan. The 7.2-m-high tsunami completely replaced muddy sediment with drifting sea sand throughout the lagoon, leading to the drastic changes in quantity and quality of sedimental organic matters, sulfide contents, and sediment redox condition. Intensive physical stress devastated the benthic community, but the disappearance of sulfidic muddy bottoms significantly improved the habitat quality for macrozoobenthos. The re-established macrozoobenthic community after 5 months was characterized by (1) a 2-fold higher total density, but sharp declines in species richness, diversity, and evenness; (2) an increased density of opportunistic taxa (e.g., polychaete Pseudopolydora spp. and amphipod Monocorophium uenoi) in newly created sandy bottoms; and (3) disappearance of several dominant taxa including bivalves and chironomid larvae. These findings indicate that the sensitivity and recovery potential of macrozoobenthos were highly taxa-specific, which was closely related to the taxa's ecological characteristics, including tolerance to physical disturbance, life-history traits, and life form. Our data revealed the rapid recolonization of opportunistic macrozoobenthos after a huge tsunami, which would contribute to the functional recovery of estuarine soft-bottom habitats shortly after a disturbance event.

Early invasion population structure of quagga mussel and associated benthic invertebrate community composition on soft sediment in a large reservoir

USGS Publications Warehouse

Wittmann, Marion E.; Chandra, Sudeep; Caires, Andrea; Denton, Marianne; Rosen, Michael R.; Wong, Wai Hing; Teitjen, Todd; Turner, Kent; Roefer, Peggy; Holdren, G. Chris

2010-01-01

In 2007 an invasive dreissenid mussel species, Dreissena bugensis (quagga mussel), was discovered in Lake Mead reservoir (AZ–NV). Within 2 years, adult populations have spread throughout the lake and are not only colonizing hard substrates, but also establishing in soft sediments at depths ranging from 1 to >100 m. Dreissena bugensis size class and population density distribution differs between basins; cluster analysis revealed 5 adult cohorts within Boulder Basin and Overton Arm but low densities and low cohort survival in the Las Vegas Basin. Regression analysis suggests depth and temperature are not primary controllers of D. bugensis density in Lake Mead, indicating other factors such as sediment type, food availability or other resource competition may be important. Monthly veliger tows showed at least 2 major spawning events per year, with continuous presence of veligers in the water column. Adult mussels have been found in spawn or post-spawn condition in soft sediments in shallow to deep waters (>80 m) indicating the potential for reproduction at multiple depths. Comparisons to a 1986 benthic survey suggest there have been shifts in nondreissenid macroinvertebrate composition; however, it is unclear if this is due to D. bugensis presence. Current distribution of nondreissenid macroinvertebrates is heterogeneous in all 3 basins, and their biodiversity decreased when D. bugensis density was 2500/m2 or greater.

Dynamic Simulations for the Seismic Behavior on the Shallow Part of the Fault Plane in the Subduction Zone during Mega-Thrust Earthquakes

NASA Astrophysics Data System (ADS)

Tsuda, K.; Dorjapalam, S.; Dan, K.; Ogawa, S.; Watanabe, T.; Uratani, H.; Iwase, S.

2012-12-01

The 2011 Tohoku-Oki earthquake (M9.0) produced some distinct features such as huge slips on the order of several ten meters around the shallow part of the fault and different areas with radiating seismic waves for different periods (e.g., Lay et al., 2012). These features, also reported during the past mega-thrust earthquakes in the subduction zone such as the 2004 Sumatra earthquake (M9.2) and the 2010 Chile earthquake (M8.8), get attentions as the distinct features if the rupture of the mega-thrust earthquakes reaches to the shallow part of the fault plane. Although various kinds of observations for the seismic behavior (rupture process and ground motion characteristics etc.) on the shallow part of the fault plane during the mega-trust earthquakes have been reported, the number of analytical or numerical studies based on dynamic simulation is still limited. Wendt et al. (2009), for example, revealed that the different distribution of initial stress produces huge differences in terms of the seismic behavior and vertical displacements on the surface. In this study, we carried out the dynamic simulations in order to get a better understanding about the seismic behavior on the shallow part of the fault plane during mega-thrust earthquakes. We used the spectral element method (Ampuero, 2009) that is able to incorporate the complex fault geometry into simulation as well as to save computational resources. The simulation utilizes the slip-weakening law (Ida, 1972). In order to get a better understanding about the seismic behavior on the shallow part of the fault plane, some parameters controlling seismic behavior for dynamic faulting such as critical slip distance (Dc), initial stress conditions and friction coefficients were changed and we also put the asperity on the fault plane. These understandings are useful for the ground motion prediction for future mega-thrust earthquakes such as the earthquakes along the Nankai Trough.

Evidence for lateral mantle plume flow feeding the Central Indian Ridge

NASA Astrophysics Data System (ADS)

Murton, B. J.; Tindle, A. G.

2003-04-01

The Central Indian Ridge exhibits morphological and geochemical features indicating lateral flow of shallow plume asthenosphere from the Reunion hot-spot to the ridge axis. South of the Marie Celeste fracture zone, at 18.25°S, the Central Indian Ridge is bound by a southward closing, “V”-shaped region of shallow crust that extends for over 800 km. Over this distance, the ridge axis deepens to the south and is also affected by left-stepping offsets that bring it towards the west. The northern end of the ridge, which is closest to the island of La'Réunion, is shallowest and dominated by an inflated segment with associated sheet flows covering over 50 square kilometres. These morphological features are usually associated with ridge-hot-spot interaction. However, the nearest active hot-spot lies over 1100 km to the west beneath the island of La'Réunion. Geochemical trends for basalts erupted along the Central Indian Ridge demonstrate a gradient of northward decreasing MgO and increasing SiO2, indicating a relationship between shallower crust and increased magmatic fractional crystallisation. Superimposed on this gradient is an excess increase in incompatible element ratios, indicative of mantle enrichment to the north. The enrichment correlates with the spreading-parallel distance between the ridge axis and the edge of the "V"-shaped region of anomalously shallow crust. Locally, the enriched mantle component is found preferentially at third-order ridge offsets and adjacent to the rift walls demonstrating melting of a compositionally stratified, spinel-lherzolite mantle. These features are evidence for shallow, lateral flow of enriched hot-spot asthenosphere at a velocity of ~333 mm yr-1 and with a flux of at least 50 m3 s-1, through a mantle 'worm', towards the ridge axis where it migrates south at a rate of 54 - 67 mm per year. The trend of the geochemical enrichment points to mixing between deeper N-MORB and shallower Reunion hot-spot sources beneath the Central Indian Ridge.

A Standardised Vocabulary for Identifying Benthic Biota and Substrata from Underwater Imagery: The CATAMI Classification Scheme

PubMed Central

Jordan, Alan; Rees, Tony; Gowlett-Holmes, Karen

2015-01-01

Imagery collected by still and video cameras is an increasingly important tool for minimal impact, repeatable observations in the marine environment. Data generated from imagery includes identification, annotation and quantification of biological subjects and environmental features within an image. To be long-lived and useful beyond their project-specific initial purpose, and to maximize their utility across studies and disciplines, marine imagery data should use a standardised vocabulary of defined terms. This would enable the compilation of regional, national and/or global data sets from multiple sources, contributing to broad-scale management studies and development of automated annotation algorithms. The classification scheme developed under the Collaborative and Automated Tools for Analysis of Marine Imagery (CATAMI) project provides such a vocabulary. The CATAMI classification scheme introduces Australian-wide acknowledged, standardised terminology for annotating benthic substrates and biota in marine imagery. It combines coarse-level taxonomy and morphology, and is a flexible, hierarchical classification that bridges the gap between habitat/biotope characterisation and taxonomy, acknowledging limitations when describing biological taxa through imagery. It is fully described, documented, and maintained through curated online databases, and can be applied across benthic image collection methods, annotation platforms and scoring methods. Following release in 2013, the CATAMI classification scheme was taken up by a wide variety of users, including government, academia and industry. This rapid acceptance highlights the scheme’s utility and the potential to facilitate broad-scale multidisciplinary studies of marine ecosystems when applied globally. Here we present the CATAMI classification scheme, describe its conception and features, and discuss its utility and the opportunities as well as challenges arising from its use. PMID:26509918

If Arctic charr Salvelinus alpinus is “the most diverse vertebrate,” what is the lake charr Salvelinus namaycush?

USGS Publications Warehouse

Muir, Andrew M.; Hansen, Michael J.; Bronte, Charles R.; Krueger, Charles C.

2016-01-01

Teleost fishes are prominent vertebrate models of evolution, illustrated among old-world radiations by the Cichlidae of East African Great Lakes and new-world radiations by the circumpolar Arctic charr Salvelinus alpinus. Herein, we describe variation in lake charr S. namaycush morphology, life history, physiology, and ecology, as another example of radiation. The lake charr is restricted to northern North America, where it originated from glacial refugia and diversified in large lakes. Shallow and deepwater morphs arose in multiple lakes, with a large-bodied shallow-water ‘lean’ morph in shallow inshore depths, a small-bodied mid-water ‘humper’ morph on offshore shoals or banks, and a large-bodied deep-water ‘siscowet’ morph at depths > 100 m. Eye position, gape size, and gillraker length and spacing adapted for feeding on different-sized prey, with piscivorous morphs (leans and siscowets) reaching larger asymptotic size than invertivorous morphs (humpers). Lean morphs are light in color, whereas deepwater morphs are drab and dark, although the pattern is reversed in dark tannic lakes. Morphs shift from benthic to pelagic feeding at a length of 400–490-mm. Phenotypic differences in locomotion, buoyancy, and lipid metabolism evolved into different mechanisms for buoyancy regulation, with lean morphs relying on hydrodynamic lift and siscowet morphs relying on hydrostatic lift. We suggest that the Salvelinus genus, rather than the species S. alpinus, is a diverse genus that should be the subject of comparative studies of processes causing divergence and adaptation among member species that may lead to a more complete evolutionary conceptual model.

Snake River fall Chinook salmon life history investigations: Annual report 2011 (April 2011 - March 2012)

USGS Publications Warehouse

Tiffan, Kenneth F.; Connor, William P.; Bellgraph, Brian J.; Kock, Tobias J.; Mullins, Frank; Steinhorst, R. Kirk; Christiansen, Helena E.; McCormick, Stephen D.; Ortega, Lori A.; Carter, Kathleen M.; Arntzen, Evan V.; Klett, Katherine J.C.; Deng, Z. Daniel; Abel, Tylor K.; Linley, Timothy J.; Cullinan, Valerie I.; St John, Scott J.; Erhardt, John M.; Bickford, Brad; Schmidt, Amanda; Rhodes, Tobyn N.

2013-01-01

Chapter Four – We conducted monthly beam trawling in Lower Granite and Little Goose reservoirs to describe the seasonal abundance of benthic epifauna that are potentially important as prey to juvenile fall Chinook salmon. The predominant taxa collected were Siberian prawns, the opossum shrimp Neomysis mercedis, and the amphipod Corophium sp. Prawns were relatively abundant at shallow sites in both reservoirs in June, but were more abundant at deep sites in lower and middle reservoir reaches in autumn. Prawn densities were commonly <0.2/m2. Prawn length-frequency data indicated that there were at least two size classes. Juvenile prawns present in shallow water more often than adult prawns, which were generally only found in deep water by autumn. Ovigerous prawns had an average of 171 eggs, which represented about 11.5% of their body weight. Limited diet analyses suggested that prawns consumed Corophium, Neomysis, and aquatic insects. Neomysis dominated all catches both in terms of abundance and biomass, and they were more abundant in Lower Granite compared to Little Goose reservoir. Neomysis were more abundant at shallow sites than at deep sites. Corophium were present in our collections but were never abundant, probably because our trawl was not effective at capturing them. The caloric content of prawns (4,782 Kcal), Neomysis (4,962 Kcal), and Corophium (4,926 Kcal) indicates that these prey would be energetically profitable for juvenile salmon. Subyearling fall Chinook salmon prey heavily on Neomysis and Corophium at times, but the importance of prawns as prey is uncertain.

The Assimilation of Diazotroph-Derived Nitrogen by Scleractinian Corals Depends on Their Metabolic Status

PubMed Central

Grover, Renaud; Maguer, Jean-François; Fine, Maoz; Ferrier-Pagès, Christine

2017-01-01

ABSTRACT Tropical corals are associated with a diverse community of dinitrogen (N2)-fixing prokaryotes (diazotrophs) providing the coral an additional source of bioavailable nitrogen (N) in oligotrophic waters. The overall activity of these diazotrophs changes depending on the current environmental conditions, but to what extent it affects the assimilation of diazotroph-derived N (DDN) by corals is still unknown. Here, in a series of 15N2 tracer experiments, we directly quantified DDN assimilation by scleractinian corals from the Red Sea exposed to different environmental conditions. We show that DDN assimilation strongly varied with the corals’ metabolic status or with phosphate availability in the water. The very autotrophic shallow-water (~5 m) corals showed low or no DDN assimilation, which significantly increased under elevated phosphate availability (3 µM). Corals that depended more on heterotrophy (i.e., bleached and deep-water [~45 m] corals) assimilated significantly more DDN, which contributed up to 15% of the corals’ N demand (compared to 1% in shallow corals). Furthermore, we demonstrate that a substantial part of the DDN assimilated by deep corals was likely obtained from heterotrophic feeding on fixed N compounds and/or diazotrophic cells in the mucus. Conversely, in shallow corals, the net release of mucus, rich in organic carbon compounds, likely enhanced diazotroph abundance and activity and thereby the release of fixed N to the pelagic and benthic reef community. Overall, our results suggest that DDN assimilation by corals varies according to the environmental conditions and is likely linked to the capacity of the coral to acquire nutrients from seawater. PMID:28074021

Successive transitory distribution of Thaumarchaeota and partitioned distribution of Bathyarchaeota from the Pearl River estuary to the northern South China Sea.

PubMed

Zhou, Zhichao; Zhang, Guo-Xia; Xu, Yan-Bin; Gu, Ji-Dong

2018-06-26

Thaumarchaeota and Bathyarchaeota (formerly named Miscellaneous Crenarchaeotal Group, MCG) are globally occurring archaea playing potential roles in nitrogen and carbon cycling, especially in marine benthic biogeochemical cycle. Information on their distributional and compositional patterns could provide critical clues to further delineate their physiological and biochemical characteristics. Profiles of thaumarchaeotal and the total archaeal community in the northern South China Sea surface sediments revealed a successively transitional pattern of Thaumarchaeota composition using MiSeq sequencing. Shallow-sea sediment enriched phylotypes decreased gradually along the slope from estuarine and coastal marine region to the deep-sea, while deep-sea sediment enriched phylotypes showed a trend of increasing. Proportion of Thaumarchaeota within the total archaea increased with seawater depth. Phylotypes enriched in shallow- and deep-sea sediments were affiliated to OTUs originated from similar niches, suggesting that physiological adaption not geographical distance shaped the distribution of Thaumarchaeota lineages. Quantitative PCR also depicted a successive decrease of thaumarchaeotal 16S rRNA gene abundance from the highest at shallow-sea sites E708S and E709S (2.57 × 10 6 and 2.73 × 10 6  gene copies/g of dry sediment) to the lowest at deep-sea sites E525S and E407S (1.97 × 10 6 and 2.14 × 10 6  gene copies/g of dry sediment). Both of the abundance fractions of Bathyarchaeota subgroups (including subgroups 1, 6, 8, 10, 13, 15, 17, and ungrouped Bathyarchaeota) and the total Bathyarchaeota in the total archaea showed a negative distribution to seawater depth. Partitioned distribution of Bathyarchaeota fraction in the total archaea is documented for the first time in this study, and the shallow- and deep-sea Bathyarchaeota could account for 17.8 and 0.8%, respectively, on average. Subgroups 6 and 8, enriched subgroups in shallow-sea sediments, largely explained this partitioned distribution pattern according to seawater depth. Their prevalence in shallow-sea and suboxic estuarine sediments rather than deep-sea sediments hints that their metabolic properties of carbon metabolism are adapted to carbon substrates in these environments.

Global warming and mass mortalities of benthic invertebrates in the Mediterranean Sea.

PubMed

Rivetti, Irene; Fraschetti, Simonetta; Lionello, Piero; Zambianchi, Enrico; Boero, Ferdinando

2014-01-01

Satellite data show a steady increase, in the last decades, of the surface temperature (upper few millimetres of the water surface) of the Mediterranean Sea. Reports of mass mortalities of benthic marine invertebrates increased in the same period. Some local studies interpreted the two phenomena in a cause-effect fashion. However, a basin-wide picture of temperature changes combined with a systematic assessment on invertebrate mass mortalities was still lacking. Both the thermal structure of the water column in the Mediterranean Sea over the period 1945-2011 and all documented invertebrate mass mortality events in the basin are analysed to ascertain if: 1- documented mass mortalities occurred under conditions of positive temperature trends at basin scale, and 2- atypical thermal conditions were registered at the smaller spatial and temporal scale of mass mortality events. The thermal structure of the shallow water column over the last 67 years was reconstructed using data from three public sources: MEDAR-MEDATLAS, World Ocean Database, MFS-VOS programme. A review of the mass mortality events of benthic invertebrates at Mediterranean scale was also carried out. The analysis of in situ temperature profiles shows that the Mediterranean Sea changed in a non-homogeneous fashion. The frequency of mass mortalities is increasing. The areas subjected to these events correspond to positive thermal anomalies. Statistically significant temperature trends in the upper layers of the Mediterranean Sea show an increase of up to 0.07°C/yr for a large fraction of the basin. Mass mortalities are consistent with both the temperature increase at basin scale and the thermal changes at local scale, up to 5.2°C. Our research supports the existence of a causal link between positive thermal anomalies and observed invertebrate mass mortalities in the Mediterranean Sea, invoking focused mitigation initiatives in sensitive areas.

Lake Vanda: A sentinel for climate change in the McMurdo Sound Region of Antarctica

NASA Astrophysics Data System (ADS)

Castendyk, Devin N.; Obryk, Maciej K.; Leidman, Sasha Z.; Gooseff, Michael; Hawes, Ian

2016-09-01

Lake Vanda is a perennially ice-covered, meromictic, endorheic lake located in the McMurdo Dry Valleys of Antarctica, and an exceptional sentinel of climate change within the region. Lake levels rose 15 m over the past 68 years in response to climate-driven variability in ice-cover sublimation, meltwater production, and annual discharge of the Onyx River, the main source of water to the lake. Evidence from a new bathymetric map and water balance model combined with annual growth laminations in benthic mats suggest that the most recent filling trend began abruptly 80 years ago, in the early 1930s. This change increased lake volume by > 50%, triggered the formation of a new, upper, thermohaline convection cell, and cooled the lower convection cell by at least 2 °C and the bottom-most waters by at > 4 °C. Additionally, the depth of the deep chlorophyll a maximum rose by > 2 m, and deep-growing benthic algal mats declined while shallow benthic mats colonized freshly inundated areas. We attribute changes in hydrology to regional variations in air flow related to the strength and position of the Amundsen Sea Low (ASL) pressure system which have increased the frequency of down-valley, föhn winds associated with surface air temperature warming in the McMurdo Dry Valleys. The ASL has also been implicated in the recent warming of the Antarctic Peninsula, and provides a common link for climate-related change on opposite sides of the continent. If this trend persists, Lake Vanda should continue to rise and cool over the next 200 years until a new equilibrium lake level is achieved. Most likely, future lake rise will lead to isothermal conditions not conducive to thermohaline convection, resulting in a drastically different physical, biogeochemical, and biological structure than observed today.

Inter-species and Seasonal Variability in Mg / Ca in Larger Benthic Foraminifera: Implications for Paleo-proxy

NASA Astrophysics Data System (ADS)

Singh, A.; Saraswati, P. K.; Pande, K.; Sanyal, P.

2015-12-01

The reports of inter-species variability to intra-test heterogeneity in Mg/Ca in several species of foraminifera have raised question about its use in estimation of seawater temperatures and necessitate field and culture studies to verify it for species from different habitats. In this study, we attempt to investigate if Mg/Ca in larger benthic foraminifera (LBF) could be a potential proxy of seawater temperatures for shallow marine carbonates. The samples were collected in different seasons from coral reef at Akajima (Okinawa, Japan). The Ca and Mg of 13 species of LBF and small benthic foraminifera from the same season were determined to examine variation in Mg/Ca among the species calcified under presumably the same temperature and salinity conditions. We also analyzed Amphistegina lessoni from different seasons for Ca, Mg and δ18O to determine variation in Mg/Ca with temperature and see how the two proxies of temperatures, Mg/Ca and δ18O, correlate in the same species. The species cluster about two distinctly separated Mg/Ca values. The first group comprising species of Amphistegina, Gypsina, Ammonia and Elphidium have relatively lower Mg/Ca, varying from 30 to 45 mmol/mol. The second group, having average Mg/Ca ranging from ~110 to 170 mmol/mol, includes species of Schlumbergerella, Baculogypsinoides, Baculogypsina, Heterostegina, Operculina, Calcarina, Amphisorus, Alveolinella and Poroeponides. The result suggests large interspecies variability implying vital effect in foraminiferal Mg/Ca. There is no distinct difference in Mg/Ca values between porcelaneous and hyaline types or symbiont-bearing and symbiont-free types. In Amphistegina lessoni the variation in Mg/Ca between individuals of the same season is as large as variation across the seasons. There is no correlation between Mg/Ca and seawater temperature. Lack of correlation between Mg/Ca and δ18O further suggests that Mg/Ca in the species is not primarily controlled by temperature.

Benthic Community Structure and Sediment Geochemical Properties at Hydrocarbon Seeps Along the Continental Slope of the Western North Atlantic

NASA Astrophysics Data System (ADS)

Demopoulos, A. W.; Bourque, J. R.; Brooke, S.

2015-12-01

Hydrocarbon seeps support distinct benthic communities capable of utilizing reduced chemical compounds for nutrition. In recent years, methane seepage has been increasingly documented along the continental slope of the U.S. Atlantic margin. In 2012 and 2013, two seeps were investigated in this region: a shallow site near Baltimore Canyon (410-450 m) and a deep site near Norfolk Canyon (1600 m). Both sites contain extensive mussel beds and microbial mats. Sediment cores and grab samples were collected to quantify the abundance, diversity, and community structure of benthic macrofauna (>300 mm) in relationship to the associated sediment environment (organic carbon and nitrogen, stable isotopes 13C and 15N, grain size, and depth) of mussel beds, mats, and slope habitats. Macrofaunal densities in microbial mats were four times greater than those present in mussel beds and slope sediments. Macrofaunal communities were distinctly different both between depths and among habitat types. Specifically, microbial mat sediments were dominated by the annelid families Dorvilleidae, Capitellidae, and Tubificidae, while mussel habitats had higher proportions of crustaceans. Diversity was lower in Baltimore microbial mat habitats, but higher in mussel and slope sediments compared to Norfolk seep habitats found at deeper depths. Multivariate statistical analysis identified sediment carbon:nitrogen (C:N) ratios and 13C values as important variables for structuring the macrofaunal communities. Higher C:N ratios were present within microbial mat habitats and depleted 13C values occurred in sediments adjacent to mussel beds found in Norfolk Canyon seeps. Differences in the quality and source of organic matter present in the seep habitats are known to be important drivers in macrofaunal community structure and associated food webs. The multivariate analysis provides new insight into the relative importance of the seep sediment quality in supporting dense macrofaunal communities compared to other seeps found throughout the region.

Global Warming and Mass Mortalities of Benthic Invertebrates in the Mediterranean Sea

PubMed Central

Rivetti, Irene; Fraschetti, Simonetta; Lionello, Piero; Zambianchi, Enrico; Boero, Ferdinando

2014-01-01

Satellite data show a steady increase, in the last decades, of the surface temperature (upper few millimetres of the water surface) of the Mediterranean Sea. Reports of mass mortalities of benthic marine invertebrates increased in the same period. Some local studies interpreted the two phenomena in a cause-effect fashion. However, a basin-wide picture of temperature changes combined with a systematic assessment on invertebrate mass mortalities was still lacking. Both the thermal structure of the water column in the Mediterranean Sea over the period 1945–2011 and all documented invertebrate mass mortality events in the basin are analysed to ascertain if: 1- documented mass mortalities occurred under conditions of positive temperature trends at basin scale, and 2- atypical thermal conditions were registered at the smaller spatial and temporal scale of mass mortality events. The thermal structure of the shallow water column over the last 67 years was reconstructed using data from three public sources: MEDAR-MEDATLAS, World Ocean Database, MFS-VOS programme. A review of the mass mortality events of benthic invertebrates at Mediterranean scale was also carried out. The analysis of in situ temperature profiles shows that the Mediterranean Sea changed in a non-homogeneous fashion. The frequency of mass mortalities is increasing. The areas subjected to these events correspond to positive thermal anomalies. Statistically significant temperature trends in the upper layers of the Mediterranean Sea show an increase of up to 0.07°C/yr for a large fraction of the basin. Mass mortalities are consistent with both the temperature increase at basin scale and the thermal changes at local scale, up to 5.2°C. Our research supports the existence of a causal link between positive thermal anomalies and observed invertebrate mass mortalities in the Mediterranean Sea, invoking focused mitigation initiatives in sensitive areas. PMID:25535973

Reconstruction of Paleoceanographic Conditions in the Rio Grande Rise Area, western South Atlantic: Evidence from Benthic Foraminiferal Data

NASA Astrophysics Data System (ADS)

Kuleshova, Liubov; Ovsepyan, Ekaterina

2017-04-01

Sediment core AI-3321 (30°56.85' S, 38°02.45' W, 2969 m water depth, 293 m length) collected from the western slope of the Rio Grande Rise was studied to count and identify benthic foraminifers in the >100 μm size fraction. Available information of the ecological preferences of benthic foraminiferal assemblages was used to reconstruct sea-surface bioproductivity and oxygenation conditions near the bottom during warm periods: Holocene, MIS 5e and MIS 7. A total of more than 100 species have been identified. They were classified according to their microhabitat preferences. All studied samples are characterized by a high abundance of calcareous epifaunal - shallow infaunal species together with low percentages of agglutinated taxa. Species diversity was described using several diversity indices that demonstrate similar variability during MIS 5 and 7 and an opposite changes during MIS 1. Cluster and Q-mode factor analysis were applied to establish dominant assemblages and major trends of foraminiferal variability. The assemblages (Factors I, II and III) are characterized by maximal scores of Epistominella exigua, Alabaminella weddellensis and Globocassidulina subglobosa, respectively. These opportunistic species are associated with seasonal supply of fresh, labile organic matter to the sea floor, and also prefer high oxygen concentrations in the bottom waters. In contrast to diversity indices, factor I, II and III do not demonstrate similar distribution throughout the studied intervals. This might be related to different combinations of amount and quality of organic matter supplied to the sea floor and corresponding oxygen content near the seafloor on the Rio Grande Rise during Holocene, MIS 5e and MIS 7. Accessory foraminiferal taxa thriving in well-oxygenated conditions and being capable to adapt to pulsed food supply (Oridorsalis umbonatus, Pullenia bulloides, Ioanella tumidula, Cibicidoides wuellerstorfi, Quinquelocilina spp., Pyrgo spp.) also occur throughout the studied intervals. This work is supported by RFBR (grant No.16-35-50080-mol_nr).

Effects of radionuclides on the recent foraminifera from the clastic sediments of the Çanakkale Strait-Turkey

NASA Astrophysics Data System (ADS)

Yümün, Zeki Ünal; Kam, Erol

2017-07-01

The radionuclides that cause radioactivity accumulate in the sediments as they descend to the seabed, similar to heavy metals. As radionuclides are present on the surface of the sediment or within the sediment, marine benthic foraminifera can be affected by the radioactive pollution. In this study, the habitat of benthic foraminifera was evaluated for radioactive pollution in the Çanakkale Strait, which constitutes the passage of the Marmara Sea and the Aegean Sea. In 2015, seven core samples and one drilling sample were taken from the shallow marine environment, which is the habitat of benthic foraminifera, in the Çanakkale Strait. Locations of the core samples were specifically selected to be pollution indicators in port areas. Gamma spectrometric analysis was used to determine the radioactivity properties of sediments. The radionuclide concentration activity values in the sediment samples obtained from the locations were Cs-137: <2-20 (Bq/kg), Th-232: 17.5-58.3 (Bq/kg), Ra-226: 16.9-48.6 (Bq/kg) and K-40: 443.7-725.6 (Bq/kg). These values were compared with the Turkish Atomic Energy Agency (TAEK) and the United Nations Scientific Committee on the Effects of Atomic Radiation (UNSCEAR) data and environmental analysis was carried out. The Ra-226 series, the Th-232 series and the K-40 radionuclides accumulate naturally and increase continuously due to anthropogenic pollution. Although the Ra-226 values obtained in the study areas remained within normal limits according to UNSCEAR values, the K-40 and Th-232 series values were observed to be high in almost all locations. The values of Cs-137 were found to be maximum 20 in Çanakkale Dere Port and they were parallel to the values in the other places. In the study, 13 genera and 20 species were identified from core and drilling samples. The number of foraminifera species and individuals obtained at locations with high pollution was very low compared to those in non-polluted zones.

Benthic foraminifera record and geochemical studies to reconstruct the recent (~400 ya) paleoenvironment of Tomales Bay, California

NASA Astrophysics Data System (ADS)

Flores, S. C.; Hill, T. M.; Russell, A. D.; Brooks, G.

2010-12-01

We are conducting investigations of calcareous benthic foraminifera acquired from Tomales Bay, California to reconstruct geochemical conditions of the bay for the past ~400 years, a time period of both natural and anthropogenic environmental change. Tomales Bay, located ~50km northwest of San Francisco, is a long (20.4 km), narrow (0.7 - 1.7 km) and shallow (2.0 - 6.0 m) bay that exhibits long-residence times and is stratified in the summer due to seasonal hypersalinity. Tomales Bay is a unique environment for climate and environmental change research because of the wide documented variability in carbonate parameters (pH, alkalinity, DIC) due to freshwater input from terrestrial sources that decreases aragonite and calcite saturation states. The historical record provided by benthic foraminiferal species and geochemistry, sedimentary carbon (TOC and TIC) analyses, and investigations of recent (Rose-Bengal stained) foraminifera are being utilized to constrain 3 major processes: 1) the range of temperature and salinity shifts over the past 400 years, 2) the relative dominance of marine- vs. fresh-water sources to the bay, and 3) the extent to which freshwater input and runoff may influence water chemistry (saturation state, Ω) with impacts on foraminiferal calcification. Four sediment cores were acquired in 2009 and 2010, and subsequently age-dated utilizing radiocarbon analyses (seven samples). Results indicate an increase in preservation of agglutinated versus calcareous foraminiferal tests (shells) since the mid-1900’s, and greater abundances of agglutinated tests found near freshwater sources. The major calcareous foraminifera present in the record include Elphidium hannai, Elphidium excavatum, Ammonia tepida, and Buccella frigida. Results from oxygen and carbon stable isotope analyses as well as total organic carbon (by weight) for all the cores will also be presented. These results will be compared to modern observations and instrumental records of temperature, salinity and pH variability to understand the context of historical changes compared to modern shifts due to human influence.

Biodiversity, Community and Trophic Structure of the Suprabenthos of the Gulf of Cádiz-Guadalquivir Estuary Coupled System: Linking Pelagic-Benthic and Terrestrial-Marine Ecosystems.

NASA Astrophysics Data System (ADS)

Vilas, C.

2016-02-01

Suprabenthos biodiversity and species densities on both offshore and coastal systems are largely unknown. Main components like mysids, euphasiids or amphipods are omnivorous and constitute a major dietary component for many benthic and pelagic fishes, mammals, cephalopods and decapods. Despite their relevant ecological role linking pelagic-benthic food webs, suprabenthos have been chronically undersampled and their components underrepresented and underestimated in food web models. Many pelagic and demersal species of high commercial and ecological interest at the Gulf of Cádiz (GoC) feed at a bottom scattering layer identified from 0 to 200 m depth and up to 50 km from coast, related to the Guadalquivir Estuary (GE) influence coastal area, and present life history cycles based on a sequential use of habitats from GoC to GE nursery area, may be adapted to match the horizontal migrations of key suprabenthos prey species. In order to understand the ecological mechanisms through which the GE-GoC coupled ecosystem would influence the recruitment of these fishery resources, the suprabenthos was sampled by suprabenthic sldege (200 μm) from the shallow estuary to 75 m depth during June, August and November of 2013. We identified up to 300 species (H index 0.4-2-9 and Beta diversity 0.55), being copepods, molluscs, cumacea, cladocera, poliquets, decapods, mysids and amphipods the most important groups by biomass (mg/m3), finding densities up to 32.9 mg/m3 for copepods, 6 for mysids and up to 100 mg/m3 for decapods. Multivariate analysis determines depth as the most important variable explaining community structure, decreasing biodiversity with depth, while for sites at depths < 30 m the community changes seasonal. Fatty acid analysis of different group sizes is revealing interesting trophic links. Some prey copepods and mysid species show seasonal horizontal migrations between GoC and GE, connecting terrestrial and marine ecosystems.

Mn/Ca intra- and inter-test variability in the benthic foraminifer Ammonia tepida

NASA Astrophysics Data System (ADS)

Petersen, Jassin; Barras, Christine; Bézos, Antoine; La, Carole; de Nooijer, Lennart J.; Meysman, Filip J. R.; Mouret, Aurélia; Slomp, Caroline P.; Jorissen, Frans J.

2018-01-01

The adaptation of some benthic foraminiferal species to low-oxygen conditions provides the prospect of using the chemical composition of their tests as proxies for bottom water oxygenation. Manganese may be particularly suitable as such a geochemical proxy because this redox element is soluble in reduced form (Mn2+) and hence can be incorporated into benthic foraminiferal tests under low-oxygen conditions. Therefore, intra- and inter-test differences in foraminiferal Mn/Ca ratios may hold important information about short-term variability in pore water Mn2+ concentrations and sediment redox conditions. Here, we studied Mn/Ca intra- and inter-test variability in living individuals of the shallow infaunal foraminifer Ammonia tepida sampled in Lake Grevelingen (the Netherlands) in three different months of 2012. The deeper parts of this lake are characterized by seasonal hypoxia/anoxia with associated shifts in microbial activity and sediment geochemistry, leading to seasonal Mn2+ accumulation in the pore water. Earlier laboratory experiments with similar seawater Mn2+ concentrations as encountered in the pore waters of Lake Grevelingen suggest that intra-test variability due to ontogenetic trends (i.e. size-related effects) and/or other vital effects occurring during calcification in A. tepida (11-25 % relative SD, RSD) is responsible for part of the observed variability in Mn/Ca. Our present results show that the seasonally highly dynamic environmental conditions in the study area lead to a strongly increased Mn/Ca intra- and inter-test variability (average of 45 % RSD). Within single specimens, both increasing and decreasing trends in Mn/Ca ratios with size are observed. Our results suggest that the variability in successive single-chamber Mn/Ca ratios reflects the temporal variability in pore water Mn2+. Additionally, active or passive migration of the foraminifera in the surface sediment may explain part of the observed Mn/Ca variability.

Biological Communities and Geomorphology of Patch Reefs in Biscayne National Park, Florida, U.S.A.

USGS Publications Warehouse

Kuffner, Ilsa B.; Brock, John C.; Grober-Dunsmore, Rikki; Hickey, T. Don; Bonito, Victor; Bracone, Jeremy E.; Wright, C. Wayne

2008-01-01

Coral reef ecosystem management benefits from continual, quantitative assessment of the resources being managed, plus assessment of factors that affect distribution patterns of organisms in the ecosystem. In this study, we investigated the relationships among physical, benthic, and fish variables in effort to help explain the distribution patterns of ecologically and economically important species on twelve patch reefs within Biscayne National Park (BNP), Florida, U.S.A. We visited 196 randomly-located sampling stations across twelve shallow (< 10m) patch reefs, using SCUBA to conduct our surveys. We measured physical variables (e.g., substratum type), estimated the percent cover of benthic community members (e.g., coral, algae), and counted and estimated mean size for each fish species observed. We also used high-density bathymetric data collected remotely via airborne laser surveying (Experimental Advanced Airborne Research Lidar (EAARL)) to calculate rugosity (bumpiness) of the reef habitat. Here we present our findings visually by graphing our quantitative community and physical structure data simultaneously in a GIS map format. You will see that biological organisms arrange themselves on each patch reef in a non-random manner. For example, many species of fish prefer to locate themselves in areas of the reef where the rugosity index is high. Rugose parts of the reef provide them with good hiding places from predators. These maps (and the data used to create them) are permanent records of the status of reef resources found on these twelve patch reefs in BNP as of September, 2003. The survey data found in the shapefile located on this CD product includes benthic percent cover data for algae, coral, encrusting invertebrates, and substratum type, in addition to gorgonian abundance and volume, total fish abundance and species richness, and specific counts for Acanthurids (surgeonfish), Scarids (parrotfish), Lutjanids (snappers), Haemulids (grunts), Serranids (groupers), and Pomacentrids (damselfish).

Faunal and stable isotopic analyses of benthic foraminifera from the Southeast Seep on Kimki Ridge offshore southern California, USA

USGS Publications Warehouse

McGann, Mary; Conrad, James E.

2018-01-01

We investigated the benthic foraminiferal faunal and stable carbon and oxygen isotopic composition of a 15-cm push core (NA075-092b) obtained on a Telepresence-Enabled cruise to the Southeast Seep on Kimki Ridge offshore southern California. The seep core was taken at a depth of 973 m in the vicinity of a Beggiatoa bacterial mat and vesicomyid clams (Calyptogena) and compared to previously published data of living assemblages from ~ 714 m, four reference cores obtained at ~ 1030 m, and another one at 739 m. All of the reference sites are also from the Inner Continental Borderland but with no evidence of methane seepage.No endemic species were found at the seep site and most of the taxa recovered there have been reported previously from other seep or low oxygen environments. Q- and R-mode cluster analyses clearly illustrated differences in the faunal assemblages of the seep and non-seep sites. The living assemblage at Southeast Seep was characterized by abundant Takayanagia delicata, Cassidulina translucens, and Spiroplectammina biformis, whereas the non-seep San Pedro Basin reference assemblage was comprised primarily of Chilostomella oolina and Globobulimina pacifica. Density and species richness were lower at the seep site compared to the non-seep site, reflecting the harsher living conditions there. The dead assemblage at the seep site was dominated by Gyroidina turgida compared to Cassidulina translucens at the ~ 1030 m non-seep site and Cassidulina translucens, Pseudoparrella pacifica, and Takayanagia delicata at the 739 m non-seep site. Density was three times lower at Southeast Seep than at the non-seep sites of comparable water depth but species richness was ~ 30% higher. Stable carbon isotopic values were considerably depleted in the seep samples compared to the non-seep samples, with a progression from lightest to heaviest average δ13C values evident at the seep site reflecting microhabitat preference and vital effect: the deep infaunal species of Globobulimina, the shallow infaunal species Uvigerina peregrina, the epifaunal species Cibicidoides wuellerstorfi, and the shallow infaunal but aragonite-shelled species Hoeglundina elegans. The δ13C values downcore among each benthic species indicates ongoing fluid seepage through at least the last 3800 cal yr B.P. at Southeast Seep. Besides the continual local seepage, evidence from δ13C values of planktic foraminifera in the seep core suggest two pulses of methane (at 3000 and 3700 cal yr B.P.) were released that were large enough to influence much of the water column. Paired benthic and planktic foraminiferal stable oxygen isotope records provide evidence that there were no paleoenvironmental changes such as increased bottom-water temperature or changes in oxygen isotopic composition of bottom and pore waters during this 3800-year record to induce the methane releases. Instead, Southeast Seep appears to be the result of local faulting providing pathways for fluid to flow to the seafloor at a fault stepover or transpressional bend in the regional strike-slip system.

Phosphorus in the ocean and marine sediments: similarities between present and past processes

NASA Astrophysics Data System (ADS)

Tamburini, F.

2004-12-01

Because phosphorus (P) is an essential nutrient, geochemical research has focused over the years on understanding the different aspects of the P cycle in the oceans, from the global to microbial scale. In the last 40 years, giant phosphorite deposits were largely studied, and their episodic occurrence in the geological record was alternatively interpreted as the product of shallow water environments, high productivity, low-sedimentation rates, and/or changes in sea level. Although research has focused more recently on the oceanic burial fluxes and residence time of P, there is still a general agreement on the need for more data. Thanks to new analytical techniques, allowing the detection of small quantities of phosphate (on the order of ?mol/g), and to the increased availability of sediment cores, P-bearing sediments have been found everywhere beneath the ocean floor. This finding has changed our understanding of P behavior in the ocean, and is redefining the role of P as an important nutrient, for example, over glacial-interglacial time scales. I will present glacial-interglacial reconstructions of burial and benthic fluxes of P, with the goal of understanding to which extent the P cycle is linked to global processes. The data, averaged to the whole ocean, indicate that burial fluxes of reactive P during glacial times are not considerably lower than during interglacials. This observation could lead to the conclusion that no changes occurred in P cycle on glacial-interglacial timescales and, therefore, that C cycle and climate variations were independent of P cycle. However, when the benthic flux estimates are taken into account, a different picture arises. During low sea level periods, the redistribution of sediments from shallow to deep waters, due to the reduction of the continental margin surface, fostered P regeneration during settling of organic matter. Even if P burial fluxes remain fairly constant, the oceanic phosphate inventory of glacial bottom waters was probably higher. On a different time scale, the shift in P behavior between glacial and interglacial periods could have been promoted by conditions similar to those that led to the formation of phosphorite deposits, which are abundant in the geological past but rare today.

Testing the applicability of a benthic foraminiferal-based transfer function for the reconstruction of paleowater depth changes in Rhodes (Greece) during the early Pleistocene.

PubMed

Milker, Yvonne; Weinkauf, Manuel F G; Titschack, Jürgen; Freiwald, Andre; Krüger, Stefan; Jorissen, Frans J; Schmiedl, Gerhard

2017-01-01

We present paleo-water depth reconstructions for the Pefka E section deposited on the island of Rhodes (Greece) during the early Pleistocene. For these reconstructions, a transfer function (TF) using modern benthic foraminifera surface samples from the Adriatic and Western Mediterranean Seas has been developed. The TF model gives an overall predictive accuracy of ~50 m over a water depth range of ~1200 m. Two separate TF models for shallower and deeper water depth ranges indicate a good predictive accuracy of 9 m for shallower water depths (0-200 m) but far less accuracy of 130 m for deeper water depths (200-1200 m) due to uneven sampling along the water depth gradient. To test the robustness of the TF, we randomly selected modern samples to develop random TFs, showing that the model is robust for water depths between 20 and 850 m while greater water depths are underestimated. We applied the TF to the Pefka E fossil data set. The goodness-of-fit statistics showed that most fossil samples have a poor to extremely poor fit to water depth. We interpret this as a consequence of a lack of modern analogues for the fossil samples and removed all samples with extremely poor fit. To test the robustness and significance of the reconstructions, we compared them to reconstructions from an alternative TF model based on the modern analogue technique and applied the randomization TF test. We found our estimates to be robust and significant at the 95% confidence level, but we also observed that our estimates are strongly overprinted by orbital, precession-driven changes in paleo-productivity and corrected our estimates by filtering out the precession-related component. We compared our corrected record to reconstructions based on a modified plankton/benthos (P/B) ratio, excluding infaunal species, and to stable oxygen isotope data from the same section, as well as to paleo-water depth estimates for the Lindos Bay Formation of other sediment sections of Rhodes. These comparisons indicate that our orbital-corrected reconstructions are reasonable and reflect major tectonic movements of Rhodes during the early Pleistocene.

The gap in the Arctic Cenozoic Record: Expect the Unexpected

NASA Astrophysics Data System (ADS)

Sangiorgi, F.; Brumsack, H.; Schouten, S.; Brinkhuis, H.; Kaminski, M. A.; Reichart, G.; Stickley, C. E.; Willard, D. A.; Sinninghe Damste', J. S.

2006-12-01

Integrated Ocean Drilling Program Expedition 302, a.k.a. the Arctic Coring Expedition (ACEX), drilled more than 400 meters below the seafloor at the central Lomonosov Ridge, ca 250 km from the modern North Pole in water depths of about 1300 m. The partially recovered sediments provide a unique record of the geological and paleoceanographical evolution of the Arctic Ocean during the Cenozoic. The record indicates a transition from a "greenhouse world", characterized by a relative shallow marine setting, with organic-rich sediment and frequent brackish or even fresh surface waters during the latest Palaeocene and the early Eocene, to an "icehouse world" of hemipelagic sedimentation affected by the occurrence of sea ice from the middle Miocene to present. Much to our surprise, these two states are separated by a major hiatus, not obvious from the seismic record and the lithology of the cores, spanning at least 25 Ma as derived from dinocyst and benthic foraminifer stratigraphies. These testify that deposits of probable late early Miocene age directly overlie early middle Eocene sediments. To unravel the nature of the hiatus, we performed a multiproxy micropaleontological and geochemical study on the surrounding record, i.e. lithological units 1/6, 1/5 and 1/4, where the sediment changes from homogeneous dark into a cm-scaled alternation ("zebra-like") black and grey bands to light grey, blue and reddish-brown. Paleoenvironmental reconstructions based on organic-walled dinoflagellate cysts, pollen and spores, benthic foraminifera, inorganic and organic geochemistry and siliceous remains reveal conspicuous changes, suggesting a transition from brackish-freshwater to shallow-lagoonal and to open marine environments. These environmental turnovers, coupled with the occurrence of such a large hiatus, cannot be due to climatic shifts alone, but suggest that major tectonic rearrangements likely changed the depositional setting. On-going organic geochemical analysis will be used to constrain the climatic and environmental changes throughout the studied interval in terms of quantified temperature changes (TEX86), relative variations in freshwater input (BIT) and in water column oxygenation (oxic vs. euxinic conditions).

Testing the applicability of a benthic foraminiferal-based transfer function for the reconstruction of paleowater depth changes in Rhodes (Greece) during the early Pleistocene

PubMed Central

Weinkauf, Manuel F. G.; Titschack, Jürgen; Freiwald, Andre; Krüger, Stefan; Jorissen, Frans J.; Schmiedl, Gerhard

2017-01-01

We present paleo-water depth reconstructions for the Pefka E section deposited on the island of Rhodes (Greece) during the early Pleistocene. For these reconstructions, a transfer function (TF) using modern benthic foraminifera surface samples from the Adriatic and Western Mediterranean Seas has been developed. The TF model gives an overall predictive accuracy of ~50 m over a water depth range of ~1200 m. Two separate TF models for shallower and deeper water depth ranges indicate a good predictive accuracy of 9 m for shallower water depths (0–200 m) but far less accuracy of 130 m for deeper water depths (200–1200 m) due to uneven sampling along the water depth gradient. To test the robustness of the TF, we randomly selected modern samples to develop random TFs, showing that the model is robust for water depths between 20 and 850 m while greater water depths are underestimated. We applied the TF to the Pefka E fossil data set. The goodness-of-fit statistics showed that most fossil samples have a poor to extremely poor fit to water depth. We interpret this as a consequence of a lack of modern analogues for the fossil samples and removed all samples with extremely poor fit. To test the robustness and significance of the reconstructions, we compared them to reconstructions from an alternative TF model based on the modern analogue technique and applied the randomization TF test. We found our estimates to be robust and significant at the 95% confidence level, but we also observed that our estimates are strongly overprinted by orbital, precession-driven changes in paleo-productivity and corrected our estimates by filtering out the precession-related component. We compared our corrected record to reconstructions based on a modified plankton/benthos (P/B) ratio, excluding infaunal species, and to stable oxygen isotope data from the same section, as well as to paleo-water depth estimates for the Lindos Bay Formation of other sediment sections of Rhodes. These comparisons indicate that our orbital-corrected reconstructions are reasonable and reflect major tectonic movements of Rhodes during the early Pleistocene. PMID:29166653

Polar zoobenthos blue carbon storage increases with sea ice losses, because across-shelf growth gains from longer algal blooms outweigh ice scour mortality in the shallows.

PubMed

Barnes, David K A

2017-12-01

One of the major climate-forced global changes has been white to blue to green; losses of sea ice extent in time and space around Arctic and West Antarctic seas has increased open water and the duration (though not magnitude) of phytoplankton blooms. Blueing of the poles has increases potential for heat absorption for positive feedback but conversely the longer phytoplankton blooms have increased carbon export to storage and sequestration by shelf benthos. However, ice shelf collapses and glacier retreat can calve more icebergs, and the increased open water allows icebergs more opportunities to scour the seabed, reducing zoobenthic blue carbon capture and storage. Here the size and variability in benthic blue carbon in mega and macrobenthos was assessed in time and space at Ryder and Marguerite bays of the West Antarctic Peninsula (WAP). In particular the influence of the duration of primary productivity and ice scour are investigated from the shallows to typical shelf depths of 500 m. Ice scour frequency dominated influence on benthic blue carbon at 5 m, to comparable with phytoplankton duration by 25 m depth. At 500 m only phytoplankton duration was significant and influential. WAP zoobenthos was calculated to generate ~10 7 , 4.5 × 10 6 and 1.6 × 10 6 tonnes per year (between 2002 and 2015) in terms of production, immobilization and sequestration of carbon respectively. Thus about 1% of annual primary productivity has sequestration potential at the end of the trophic cascade. Polar zoobenthic blue carbon capture and storage responses to sea ice losses, the largest negative feedback on climate change, has been underestimated despite some offsetting of gain by increased ice scouring with more open water. Equivalent survey of Arctic and sub-Antarctic shelves, for which new projects have started, should reveal the true extent of this feedback and how much its variability contributes to uncertainty in climate models. © 2017 John Wiley & Sons Ltd.

Microfacies and biofabric of nummulite accumulations (Bank) from the Eocene deposits of Western Alborz (NW Iran)

NASA Astrophysics Data System (ADS)

Hadi, Mehdi; Mosaddegh, Hossein; Abbassi, Nasrollah

2016-12-01

The nummulite bank from the Eocene Ziarat Formation is described for the first time from Alborz, Iran, enhancing the record of these nummulite-rich accumulations in the Eocene of the circum-Tethyan carbonate platform. Five microfacies types have been defined within the shallow-water carbonate deposits of the Ziarat formation located in the western Alborz zone. Microfacies type 1 contains the most diverse Alveolina species associated with predominance of Nummulites A-forms. Microfacies type 2 is characterized by the presence of bivalve (oysters) fragments. Microfacies type 3 is supported by the high abundance of nummulitids. Microfacies type 4 is dominated by the occurrence of encrusting foraminifera-algal with flat growth forms that are mainly formed within the acervulinids assemblage. Finally, there is the presence of orthophragminids and nummuitids represented by microfacies type 5. Microfacies data obtained from the investigation area show that nummulite banks were formed within the back, core and fore-bank palaeoenvironments. The classification method of this paper is based on use biometric, biofabric, taphonomic and palaeoecological characteristics of larger benthic foraminifera. In addition, the calculated intraskeletal porosity by the use of numerous sections and FE-SEM images of Nummulites tests were displacement of tests in order to achieve a better understanding of paleo-conditions that occurred during sedimentation. We conclude that differences among bank frameworks suggest that small biconvex A-forms of Nummulites tests along with alveolinids were living in shallow, euphotic waters, whereas robust and ovate nummulitid tests thrived and concentrated in the intermediate (40-80 m) water with biofabrics in the min-scales, which indicates the influence of waves and currents in combination with wave-winnowing processes. More distal accumulations, the fore-bank were characterized by orthophragminid and nummulitid tests in the deeper part of the photic zone. The larger benthic foraminifera, as confirmed by Discocyclina javana (VERBEEK), D. cf. dispansa (SOWERBY), Assilina ex. gr. exponens (SOWERBY), Nummulites ex. gr. globulus)SCHAUB(, Alveolina ellipsoidalis (SCHWAGER), A. subpyrenaica (LEYMERIE), A. pisiformis (HOTTINGER), A. tumida (HOTTINGER), A. cemali (SIREL et ACAR), A. laxa (HOTTINGER), A. ex. gr. cremae)CHECCHIA-RISPOLI(, suggest the early Ilerdian-Middle Eocene age of these sediments.

Reconstruction of a saline, lacustrine carbonate system (Priabonian, St-Chaptes Basin, SE France): Depositional models, paleogeographic and paleoclimatic implications

NASA Astrophysics Data System (ADS)

Lettéron, Alexandre; Hamon, Youri; Fournier, François; Séranne, Michel; Pellenard, Pierre; Joseph, Philippe

2018-05-01

A 220-m thick carbonate-dominated succession has been deposited in shallow-water, saline lake environments during the early to middle Priabonian (MP17A-MP18 mammal zones) in the Saint-Chaptes Basin (south-east France). The palaeoenvironmental, paleoclimatic and palaeogeographic significance of such saline lake carbonates has been deciphered on the basis of a multi-proxy analyses including: 1) depositional and diagenetic features; 2) biological components (molluscs, benthic foraminifera, characean gyrogonites, spores and pollens); 3) carbon and oxygen stable isotopes; 4) trace elements; and 5) clay mineralogy. Five stages of lacustrine system evolution have been identified: 1) fresh-water closed lake under dry climate (unit U1); 2) fresh to brackish water lacustrine deltaic system with a mixed carbonate-siliciclastic sedimentation under relatively wet climatic conditions (unit U2); 3) salt-water lacustrine carbonate system under humid climatic setting (unit U3); 4) evaporitic lake (unit U4); and 5) closed lake with shallow-water carbonate sedimentation under subtropical to Mediterranean climate with dry seasons (unit U5). Upper Eocene aridification is evidenced to have started as early as the earliest Priabonian (unit U1: MP17A mammal zone). A change from humid to dryer climatic conditions is recorded between units U3 and U4. The early to middle Priabonian saline lake is interpreted as an athalassic (inland) lake that have been transiently connected with neighboring salt lakes influenced by seawater and/or fed with sulfates deriving from recycling of evaporites. Maximum of connection with neighboring saline lakes (Mormoiron Basin, Camargue and Central grabens, Hérault Basin) likely occurred during unit U3 and at the base of unit U5. The most likely sources of salts of these adjacent basins are: 1) Triassic evaporites derived from salt-diapirs (Rhône valley) or from paleo-outcrops located east of the Durance fault or offshore in the Gulf of Lion; or 2) marine incursions from the south, through Paleogene grabens in the Gulf of Lion.

Impact of organic matter source and quality on living benthic foraminiferal distribution on a river-dominated continental margin: A study of the Portuguese margin

NASA Astrophysics Data System (ADS)

Dessandier, Pierre-Antoine; Bonnin, Jérôme; Kim, Jung-Hyun; Bichon, Sabrina; Deflandre, Bruno; Grémare, Antoine; Sinninghe Damsté, Jaap S.

2016-06-01

Living (rose Bengal stained) benthic foraminifera were investigated on surface sediments from 23 stations from the river-dominated northwestern Portuguese margin. Samples were collected in March 2011, following the period of the maximum rainfall over the Iberian Peninsula, between 20 and 2000 m water depth along five cross-margin transects. Four of them are located off the Douro, Mondego, Tagus, and Sado Rivers and one off the Estremadura coast. The major objectives of this study are (1) to assess the impact of organic matter of various origin and quality on the benthic foraminifera and (2) to investigate the spatial differences of faunal distribution from coastal waters to the deep sea under river influences. To do this, sedimentological and biogeochemical characteristics of the sediments were identified by measuring grain size, oxygen penetration depth, total organic carbon (TOC) content, stable carbon isotopic composition of TOC (δ13CTOC) and concentration of pigments and amino acids. Based on the principal component and cluster analyses of the environmental data, three major geographical groups are identified: (1) deep stations, (2) coastal and middle slope stations, and (3) shelf stations under river influence. At the deepest stations, species are associated with high organic matter (OM) quantity but low OM quality, where Uvigerina mediterranea, Hoeglundina elegans, and agglutinated species such as Reophax scorpiurus or Bigenerina nodosaria are dominant. All stations off the Sado River, which is the most affected area by the anthropogenic influence, are also characterized by high quantity but low quality of OM with the minimum faunal density and diversity within the study area. Middle slope stations are associated with low OM content and coarse sediments (Q50) with the predominance of N. scaphum. Shallow shelf stations close to the Douro and Tagus River mouths show a dominance of taxa (e.g., Ammonia beccarii, Bulimina aculeata, Eggerelloides scaber, Nonion scaphum, Cancris auriculus, and Quinqueloculina seminula) adapted to environments characterized by high OM quality (high fresh chlorophyll (Chl a/Phaeo)) and available amino acids (enzymatically hydrolyzable amino acid (EHAA)/total enzymatically hydrolyzable amino acid (THAA)). The Biotic and Environmental linking analysis suggests that the benthic foraminiferal distribution is mostly controlled by three environmental parameters, i.e., TOC (quantity), EHAA/THAA (quality), and δ13CTOC (source). Hence, this study clearly highlights that the quantitative and qualitative inputs of OM and its source are the most important factors controlling the living benthic foraminiferal distribution with clear influences between the different rivers. This study also suggests a good tolerance of several species for river discharges where the OM quality is high.

Isotope and fatty acid trends along continental shelf depth gradients: Inshore versus offshore hydrological influences on benthic trophic functioning

NASA Astrophysics Data System (ADS)

Chouvelon, T.; Schaal, G.; Grall, J.; Pernet, F.; Perdriau, M.; A-Pernet, E. J.; Le Bris, H.

2015-11-01

Anthropogenic activities and land-based inputs into the sea may influence the trophic structure and functioning of coastal and continental shelf ecosystems, despite the numerous opportunities and services the latter offer to humans and wildlife. In addition, hydrological structures and physical dynamics potentially influence the sources of organic matter (e.g., terrestrial versus marine, or fresh material versus detrital material) entering marine food webs. Understanding the significance of the processes that influence marine food webs and ecosystems (e.g., terrestrial inputs, physical dynamics) is crucially important because trophic dynamics are a vital part of ecosystem integrity. This can be achieved by identifying organic matter sources that enter food webs along inshore-offshore transects. We hypothesised that regional hydrological structures over wide continental shelves directly control the benthic trophic functioning across the shelf. We investigated this issue along two transects in the northern ecosystem of the Bay of Biscay (north-eastern Atlantic). Carbon and nitrogen stable isotope analysis (SIA) and fatty acid analysis (FAA) were conducted on different complementary ecosystem compartments that include suspended particulate organic matter (POM), sedimentary organic matter (SOM), and benthic consumers such as bivalves, large crustaceans and demersal fish. Samples were collected from inshore shallow waters (at ∼1 m in depth) to more than 200 m in depth on the offshore shelf break. Results indicated strong discrepancies in stable isotope (SI) and fatty acid (FA) compositions in the sampled compartments between inshore and offshore areas, although nitrogen SI (δ15N) and FA trends were similar along both transects. Offshore the influence of a permanently stratified area (described previously as a ;cold pool;) was evident in both transects. The influence of this hydrological structure on benthic trophic functioning (i.e., on the food sources available for consumers) was especially apparent across the northern transect, due to unusual carbon isotope compositions (δ13C) in the compartments. At stations under the cold pool, SI and FA organism compositions indicated benthic trophic functioning based on a microbial food web, including a significant contribution of heterotrophic planktonic organisms and/or of SOM, notably in stations under the cold pool. On the contrary, inshore and shelf break areas were characterised by a microalgae-based food web (at least in part for the shelf break area, due to slope current and upwelling that can favour fresh primary production sinking on site). SIA and FAA were relevant and complementary tools, and consumers better medium- to long-term system integrators than POM samples, for depicting the trophic functioning and dynamics along inshore-offshore transects over continental shelves.

Benthic foraminifera as tools in interpretation of subsurface hydrocarbon fluid flow at Veslemøy High and Hola-Vesterålen areas of the Barents Sea.

NASA Astrophysics Data System (ADS)

Baranwal, Soma; Sauer, Simone; Knies, Jochen; Chand, Shyam; Jensen, Henning; Klug, Martin

2014-05-01

Relatively few studies have focused on high-latitude benthic foraminifera related to hydrocarbon seeps. In this study, we present micropaleontological data from 8 gravity cores from the Veslemøy High and 4 surface sediments (0-1cm) from Hola-Vesterålen, Norway. The study of hydrocarbon impregnation and its effect on benthic foraminfera was conducted on selected sediment samples from the calcium-rich Holocene sediments of the Veslemøy High. The assemblage of foraminifera have been identified from three regional clusters. Cluster I and II are dominated by benthic foraminifera Buccella, Cassidulina, Cibicides, Discopulvinulina, Epistominella, Pullenia and Trifarina. Cluster III is distinct with an elevated abundance of Cassidulina, Cibicides and Trifarina with significant (>5 %) occurrence of Nonionella and Uvigerina. There is no apparent dissolution on the preserved foraminifera. However, there can be differential dissolution or destruction of the more fragile (thinner-walled test) species like Epistominella, Nonionella or Pullenia while leaving behind over-represented species like Cibicides or Trifarina (both preferring coarse grained, high energy areas that can withstand permanent winnowing and redeposition) with higher preservation potential. Also, Cluster III is placed right over the underlying fault line with shallow seep-indications and thus the fluids released may have induced the dissolution of the fragile species. Moreover, the significant occurrence of benthic foraminifera Nonionella auris, and Uvigerina peregrina, in Holocene deposits of Cluster III may be indicative of environments influenced by hydrocarbon migration to the seafloor. Previous studies have reported active natural hydrocarbon seepage in the Hola area and the stable carbon and hydrogen isotopic composition of methane in the sediments suggests a predominantly thermogenic methane source. The seep-assemblage is composed of Cibicides (~60%), Cassidulina, Discanomalina, Textularia and Trifarina. Discanomalina coronata is an indicator species to identify active cold-water coral mounds. A negative carbon isotopic signal is recorded by D. coronata in all samples. Seep samples with low diversities also contain deformed individuals of Cibicides lobatulus (3.4-6.5 %), similar to those reported for a gigantic oil spill from a tanker or for environments polluted with heavy metals. However, it is an attached form and thus its test shape is affected by the nature of the substratum. Carbon isotopic signature of the deformed specimens reveal slightly lower values than their undeformed counterparts. One sample from Ullsfjorden was also studied where the assemblage is represented by Bulimina, Cassidulina, Globobulimina, Melonis, Nonionella and Reophax. Infaunal fauna B. marginata, M. barleeanum, and N. labradorica prefer muddy/silty to sandy substrata and high organic matter input, and thrive under suboxic-dysoxic conditions. All species in this assemblage have recorded negative carbon isotopic signal.

Relationships of field habitat measurements, visual habitat indices, and land cover to benthic macroinvertebrates in urbanized streams of the Santa Clara Valley, California

USGS Publications Warehouse

Fend, S.V.; Carter, J.L.; Kearns, F.R.

2005-01-01

We evaluated several approaches for measuring natural and anthropogenic habitat characteristics to predict benthic macroinvertebrate assemblages over a range of urban intensity at 85 stream sites in the Santa Clara Valley, California. Land cover was summarized as percentage urban land cover and impervious area within upstream buffers and the upstream subwatersheds. Field measurements characterized water chemistry, channel slope, sediment, and riparian canopy. In . addition to applying the visual-based habitat assessment in U.S. Environmental Protection Agency's rapid bioassessment protocol, we developed a simplified urban habitat assessment index based on turbidity, fine sediment deposition, riparian condition, and channel modification. Natural and anthropogenic habitat variables covaried along longitudinal stream gradients and were highly correlated with elevation. At the scale of the entire watershed, benthic macroinvertebrate measures were equally correlated with variables expressing natural gradients and urbanization effects. When natural gradients were reduced by partitioning sites into ecoregion subsection groupings, habitat variables most highly correlated with macroinvertebrate measures differed between upland and valley floor site groups. Among the valley floor sites, channel slope and physical modification of channel and riparian habitats appeared more important than upstream land cover or water quality in determining macroinvertebrate richness and ordination scores. Among upland sites, effects of upstream reservoir releases on habitat quality appeared important. Rapid habitat evaluation methods appeared to be an effective method for describing habitat features important to benthic macroinvertebrates when adapted for the region and the disturbance of interest. ?? 2005 by the American Fisheries Society.

Ferrous iron- and ammonium-rich diffuse vents support habitat-specific communities in a shallow hydrothermal field off the Basiluzzo Islet (Aeolian Volcanic Archipelago).

PubMed

Bortoluzzi, G; Romeo, T; La Cono, V; La Spada, G; Smedile, F; Esposito, V; Sabatino, G; Di Bella, M; Canese, S; Scotti, G; Bo, M; Giuliano, L; Jones, D; Golyshin, P N; Yakimov, M M; Andaloro, F

2017-09-01

Ammonium- and Fe(II)-rich fluid flows, known from deep-sea hydrothermal systems, have been extensively studied in the last decades and are considered as sites with high microbial diversity and activity. Their shallow-submarine counterparts, despite their easier accessibility, have so far been under-investigated, and as a consequence, much less is known about microbial communities inhabiting these ecosystems. A field of shallow expulsion of hydrothermal fluids has been discovered at depths of 170-400 meters off the base of the Basiluzzo Islet (Aeolian Volcanic Archipelago, Southern Tyrrhenian Sea). This area consists predominantly of both actively diffusing and inactive 1-3 meters-high structures in the form of vertical pinnacles, steeples and mounds covered by a thick orange to brown crust deposits hosting rich benthic fauna. Integrated morphological, mineralogical, and geochemical analyses revealed that, above all, these crusts are formed by ferrihydrite-type Fe 3+ oxyhydroxides. Two cruises in 2013 allowed us to monitor and sampled this novel ecosystem, certainly interesting in terms of shallow-water iron-rich site. The main objective of this work was to characterize the composition of extant communities of iron microbial mats in relation to the environmental setting and the observed patterns of macrofaunal colonization. We demonstrated that iron-rich deposits contain complex and stratified microbial communities with a high proportion of prokaryotes akin to ammonium- and iron-oxidizing chemoautotrophs, belonging to Thaumarchaeota, Nitrospira, and Zetaproteobacteria. Colonizers of iron-rich mounds, while composed of the common macrobenthic grazers, predators, filter-feeders, and tube-dwellers with no representatives of vent endemic fauna, differed from the surrounding populations. Thus, it is very likely that reduced electron donors (Fe 2+ and NH 4 + ) are important energy sources in supporting primary production in microbial mats, which form a habitat-specific trophic base of the whole Basiluzzo hydrothermal ecosystem, including macrobenthic fauna. © 2017 John Wiley & Sons Ltd.

Habitat Specialization in Tropical Continental Shelf Demersal Fish Assemblages

PubMed Central

Fitzpatrick, Ben M.; Harvey, Euan S.; Heyward, Andrew J.; Twiggs, Emily J.; Colquhoun, Jamie

2012-01-01

The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1–10 m depth), down the fore reef slope to the reef base (10–30 m depth) then across the adjacent continental shelf (30–110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected habitats through which fish can migrate. PMID:22761852

Search for Martian fossil communities: Science strategies, sediment sites, and sample handling

NASA Technical Reports Server (NTRS)

Desmarais, David J.

1988-01-01

The strategy for locating and sampling possible fossilized Martian organisms benefits from our experience with fossil microbial ecosystems on Earth. Evidence of early life is typically preserved as stromatolites in carbonates and cherts, and as microfossils in cherts, carbonates and shales. Stromatolites, which are laminated flat or domal structures built by microbial communities, are very likely the oldest and most widespread relics of early life. These communities flourished in supratidal to subtidal coastal benthic environments, wherever sunlight was available and where incoming sediments were insufficient to bury the communities before they became established. A logical site for such communities on Mars might be those areas in an ancient lake bed which were furthest from sediment input, but were still sufficiently shallow to have received sunlight. Therefore, although some sites within Valles Marineris might have contained ponded water, the possibly abundant sediment inputs might have overwhelmed stromatolite-like communities. Localized depressions which acted as catchment basins for ancient branched valley systems might be superior sites. Perhaps such depressions received drainage which, because of the relatively modest water discharges implied for these streams, was relatively low in transported sediment. Multiple streams converging on a single basin might have been able to maintain a shallow water environment for extended periods of time.

Fluvial processes and passive rehabilitation of the Lisbon Bottom side-channel chute, Lower Missouri River

USGS Publications Warehouse

Jacobson, Robert B.; Laustrup, Mark S.; Chapman, Michael D.

2001-01-01

Multiple large floods in 1993-1997 on the Lower Missouri River carved a side-channel chute through the river bottom at Lisbon, Missouri. Although similar in some respects to engineered side-channel chutes designed for habitat rehabilitation projects, the Lisbon Bottom chute has been unique in that it was allowed to evolve for more than four years with minimal stabilization. During the wet years, 1996-1999, the chute was subjected to abnormally high discharges and passed as much as 20% of the total discharge of the Missouri River. Relatively unrestrained fluvial processes during this time created a wide channel with highly diverse habitats. The upper one-half of the chute established a shallow, braided channel morphology similar to the pre-managed Missouri River. The lower half established a dynamically migrating, single-thread channel, and an incipient flood plain. Compared to the adjacent navigation channel, the chute established substantial areas of shallow, slow-velocity aquatic habitat that is considered to be in short supply in the present-day Lower Missouri River. The shortterm biological benefits have been mixed: the chute has fewer waterbird and benthic macroinvertebrate taxa than adjacent riverine habitats, but greater numbers of fish species compared to the navigation channel.

Impacts on the deep-sea ecosystem by a severe coastal storm.

PubMed

Sanchez-Vidal, Anna; Canals, Miquel; Calafat, Antoni M; Lastras, Galderic; Pedrosa-Pàmies, Rut; Menéndez, Melisa; Medina, Raúl; Company, Joan B; Hereu, Bernat; Romero, Javier; Alcoverro, Teresa

2012-01-01

Major coastal storms, associated with strong winds, high waves and intensified currents, and occasionally with heavy rains and flash floods, are mostly known because of the serious damage they can cause along the shoreline and the threats they pose to navigation. However, there is a profound lack of knowledge on the deep-sea impacts of severe coastal storms. Concurrent measurements of key parameters along the coast and in the deep-sea are extremely rare. Here we present a unique data set showing how one of the most extreme coastal storms of the last decades lashing the Western Mediterranean Sea rapidly impacted the deep-sea ecosystem. The storm peaked the 26(th) of December 2008 leading to the remobilization of a shallow-water reservoir of marine organic carbon associated with fine particles and resulting in its redistribution across the deep basin. The storm also initiated the movement of large amounts of coarse shelf sediment, which abraded and buried benthic communities. Our findings demonstrate, first, that severe coastal storms are highly efficient in transporting organic carbon from shallow water to deep water, thus contributing to its sequestration and, second, that natural, intermittent atmospheric drivers sensitive to global climate change have the potential to tremendously impact the largest and least known ecosystem on Earth, the deep-sea ecosystem.

Shallow marine response to global climate change during the Paleocene-Eocene Thermal Maximum, Salisbury Embayment, USA

USGS Publications Warehouse

Self-Trail, Jean; Robinson, Marci M.; Bralower, Timothy J.; Sessa, Jocelyn A.; Hajek, Elizabeth A.; Kump, Lee R.; Trampush, Sheila M.; Willard, Debra A.; Edwards, Lucy E.; Powars, David S.; Wandless, Gregory A.

2017-01-01

The Paleocene-Eocene Thermal Maximum (PETM) was an interval of extreme warmth that caused disruption of marine and terrestrial ecosystems on a global scale. Here we examine the sediments, flora, and fauna from an expanded section at Mattawoman Creek-Billingsley Road (MCBR) in Maryland and explore the impact of warming at a nearshore shallow marine (30–100 m water depth) site in the Salisbury Embayment. Observations indicate that at the onset of the PETM, the site abruptly shifted from an open marine to prodelta setting with increased terrestrial and fresh water input. Changes in microfossil biota suggest stratification of the water column and low-oxygen bottom water conditions in the earliest Eocene. Formation of authigenic carbonate through microbial diagenesis produced an unusually large bulk carbon isotope shift, while the magnitude of the corresponding signal from benthic foraminifera is similar to that at other marine sites. This proves that the landward increase in the magnitude of the carbon isotope excursion measured in bulk sediment is not due to a near instantaneous release of 12C-enriched CO2. We conclude that the MCBR site records nearshore marine response to global climate change that can be used as an analog for modern coastal response to global warming.

Changes in Dogger Bank macrofauna communities in the 20th century caused by fishing and climate

NASA Astrophysics Data System (ADS)

Kröncke, Ingrid

2011-09-01

The macrofauna communities on the Dogger Bank (North Sea) from the 1920s, the 1950s and the 1980s to the 2000s were compared and identified five communities with similar spatial distribution throughout the 20th century. The abundance of dominant species in the five communities varied with time. Most obvious in the 1950s was the loss of the extensive Spisula and Mactra patches, which covered most of the shallow parts of the Bank in the 1920s. Since the 1980s, they have been found only as juveniles. The biological regime shift in the late 1980s caused an increase in macrofauna abundance, species numbers, diversity and southern species in most of the communities. The climate regime shift in 2001 had opposite effects in which the abundance, species numbers, diversity and southern species decreased in most of the communities. The increase in interface-feeding species and the decrease in sand-licking amphipods in the 2000s especially in the shallow Bank Community give evidence for climate driven changes in water masses, currents, storms, turbidity and food availability via planktonic or benthic primary production. Both fishing impact and climate change are hypothesised as explaining the changes in the Dogger Bank macrofauna communities.

Evaluating Aquatic Life Benefits of Reducing Nutrient Loading ...

EPA Pesticide Factsheets

Theoretical linkages between excess nutrient loading, nutrient-enhanced community metabolism (i.e., production and respiration), and hypoxia in estuaries are well-understood. In seasonally-stratified estuaries and coastal systems (e.g., Chesapeake Bay, northern Gulf of Mexico), hypoxia is predominantly seasonal, such that the spatial extent indicates potential aquatic life impacts. However, in relatively small and shallow Gulf of Mexico bays and bayous, hypoxia frequently occurs episodically or on a diel basis. This study utilized continuous DO monitoring and 3-D hydrodynamic (Environmental Fluid Dynamics Code) and water quality (Water Quality Analysis Simulation Program) models to examine physical and biological controls on DO dynamics and ecosystem metabolism in Weeks Bay, AL. Observed vertical DO gradients varied on a diel basis, with larger amplitude variations at depth relative to the surface, underscoring the importance of benthic production and respiration as a driver of ecosystem metabolism in shallow estuaries. Hydrodynamic and water quality models simulated seasonal and event-driven dynamics, but struggled to resolve the amplitude of daily DO fluctuations, particularly in bottom waters. Using these data in conjunction with the 10-year continuous O2 record from Weeks Bay, we applied empirical relationships and simple scaling relations to predict how reducing nutrient loading may affect the frequency, severity and duration of hypoxia. We further applied

Ecology of eelgrass meadows of the Atlantic Coast: a community profile

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thayer, G.W.; Kenworthy, W.J.; Fonseca, M.S.

1984-07-01

Eelgrass, Zostera marina, dominates the ecologically important but fragile seagrass communities along the east coast of the United States from North Carolina to Nova Scotia. Grasslike leaves and an extensive root and rhizome system enable eelgrass to exist in a shallow aquatic environment subject to waves, tides, and shifting sediments. Eelgrass meadows are highly productive, frequently rivaling agricultural croplands. They provide shelter and a rich variety of primary and secondary food resources, and form a nursery habitat for the life history stages of numerous fishery organisms. The leaves absorb and release nutrients, provide surfaces for attachment, reduce water current velocity,more » turbulence and scour, and promote accumulation of detritus. Rhizomes provide protection for benthic infauna and enhance sediment stability. Roots absorb and release nutrients to interstitial waters. Because of their shallow, subtidal existence, seagrasses are susceptible to perturbations of both the water column and sediments. Eelgrass meadows are impacted by dredging and filling, some commercial fishery harvest techniques, modification of normal temperature and salinity regimes, and addition of chemical wastes. Techniques have been developed to successfully restore eelgrass habitats, but a holistic approach to planning research and environmentally-related decisions is needed to avoid cumulative environmental impacts on these vital nursery areas. 64 figures, 16 tables.« less

Impacts on the Deep-Sea Ecosystem by a Severe Coastal Storm

PubMed Central

Sanchez-Vidal, Anna; Canals, Miquel; Calafat, Antoni M.; Lastras, Galderic; Pedrosa-Pàmies, Rut; Menéndez, Melisa; Medina, Raúl; Company, Joan B.; Hereu, Bernat; Romero, Javier; Alcoverro, Teresa

2012-01-01

Major coastal storms, associated with strong winds, high waves and intensified currents, and occasionally with heavy rains and flash floods, are mostly known because of the serious damage they can cause along the shoreline and the threats they pose to navigation. However, there is a profound lack of knowledge on the deep-sea impacts of severe coastal storms. Concurrent measurements of key parameters along the coast and in the deep-sea are extremely rare. Here we present a unique data set showing how one of the most extreme coastal storms of the last decades lashing the Western Mediterranean Sea rapidly impacted the deep-sea ecosystem. The storm peaked the 26th of December 2008 leading to the remobilization of a shallow-water reservoir of marine organic carbon associated with fine particles and resulting in its redistribution across the deep basin. The storm also initiated the movement of large amounts of coarse shelf sediment, which abraded and buried benthic communities. Our findings demonstrate, first, that severe coastal storms are highly efficient in transporting organic carbon from shallow water to deep water, thus contributing to its sequestration and, second, that natural, intermittent atmospheric drivers sensitive to global climate change have the potential to tremendously impact the largest and least known ecosystem on Earth, the deep-sea ecosystem. PMID:22295084

Shallow marine response to global climate change during the Paleocene-Eocene Thermal Maximum, Salisbury Embayment, USA

NASA Astrophysics Data System (ADS)

Self-Trail, Jean M.; Robinson, Marci M.; Bralower, Timothy J.; Sessa, Jocelyn A.; Hajek, Elizabeth A.; Kump, Lee R.; Trampush, Sheila M.; Willard, Debra A.; Edwards, Lucy E.; Powars, David S.; Wandless, Gregory A.

2017-07-01

The Paleocene-Eocene Thermal Maximum (PETM) was an interval of extreme warmth that caused disruption of marine and terrestrial ecosystems on a global scale. Here we examine the sediments, flora, and fauna from an expanded section at Mattawoman Creek-Billingsley Road (MCBR) in Maryland and explore the impact of warming at a nearshore shallow marine (30-100 m water depth) site in the Salisbury Embayment. Observations indicate that at the onset of the PETM, the site abruptly shifted from an open marine to prodelta setting with increased terrestrial and fresh water input. Changes in microfossil biota suggest stratification of the water column and low-oxygen bottom water conditions in the earliest Eocene. Formation of authigenic carbonate through microbial diagenesis produced an unusually large bulk carbon isotope shift, while the magnitude of the corresponding signal from benthic foraminifera is similar to that at other marine sites. This proves that the landward increase in the magnitude of the carbon isotope excursion measured in bulk sediment is not due to a near instantaneous release of 12C-enriched CO2. We conclude that the MCBR site records nearshore marine response to global climate change that can be used as an analog for modern coastal response to global warming.