Carbonate system parameters of an algal-dominated reef along west Maui

USGS Publications Warehouse

Prouty, Nancy G.; Yates, Kimberly K.; Smiley, Nathan A.; Gallagher, Christopher; Cheriton, Olivia; Storlazzi, Curt

2018-01-01

Constraining coral reef metabolism and carbon chemistry dynamics are fundamental for understanding and predicting reef vulnerability to rising coastal CO2 concentrations and decreasing seawater pH. However, few studies exist along reefs occupying densely inhabited shorelines with known input from land-based sources of pollution. The shallow coral reefs off Kahekili, West Maui, are exposed to nutrient-enriched, low-pH submarine groundwater discharge (SGD) and are particularly vulnerable to the compounding stressors from land-based sources of pollution and lower seawater pH. To constrain the carbonate chemistry system, nutrients and carbonate chemistry were measured along the Kahekili reef flat every 4 h over a 6-d sampling period in March 2016. Abiotic process – primarily SGD fluxes – controlled the carbonate chemistry adjacent to the primary SGD vent site, with nutrient-laden freshwater decreasing pH levels and favoring undersaturated aragonite saturation (Ωarag) conditions. In contrast, diurnal variability in the carbonate chemistry at other sites along the reef flat was driven by reef community metabolism. Superimposed on the diurnal signal was a transition during the second sampling period to a surplus of total alkalinity (TA) and dissolved inorganic carbon (DIC) compared to ocean end-member TA and DIC measurements. A shift from net community production and calcification to net respiration and carbonate dissolution was identified. This transition occurred during a period of increased SGD-driven nutrient loading, lower wave height, and reduced current speeds. This detailed study of carbon chemistry dynamics highlights the need to incorporate local effects of nearshore oceanographic processes into predictions of coral reef vulnerability and resilience.

Sources and dispersal of land-based runoff from small Hawaiian drainages to a coral reef: Insights from geochemical signatures

NASA Astrophysics Data System (ADS)

Takesue, Renee K.; Storlazzi, Curt D.

2017-03-01

Land-based sediment and contaminant runoff is a major threat to coral reefs, and runoff reduction efforts would benefit from knowledge of specific runoff sources. Geochemical signatures of small drainage basins were determined in the fine fraction of soil and sediment, then used in the nearshore region of a coral reef-fringed urban embayment on southeast Oahu, Hawaii, to describe sources and dispersal of land-based runoff. The sedimentary rare earth element ratio (La/Yb)N showed a clear distinction between the two main rock types in the overall contributing area, tholeiitic and alkalic olivine basalt. Based on this geochemical signature it was apparent that the majority of terrigenous sediment on the reef flat originated from geologically old tholeiitic drainages. Sediment from one of five tholeiitic drainages had a distinct geochemical signature, and sediment with this signature was dispersed on the reef flat 2 km west and 150 m offshore of the contributing basin. Sediment and the anthropogenic metals Cd, Pb, and Zn were entrained in runoff from the most heavily urbanized region of the watershed. Although anthropogenic Cd and Zn had localized distributions close to shore, anthropogenic Pb was found associated with fine sediment on the westernmost part of the reef flat and 400 m offshore, illustrating how trade-wind-driven sediment transport can increase the scale of runoff impacts to nearshore communities. Our findings show that sediment geochemical signatures can provide insights about the source and dispersal of land-based runoff in shallow coastal environments. The application of such knowledge to watershed management and habitat remediation efforts can aid in the protection and restoration of runoff-impacted coastal ecosystems worldwide.

Sources and dispersal of land-based runoff from small Hawaiian drainages to a coral reef: Insights from geochemical signatures

USGS Publications Warehouse

Takesue, Renee K.; Storlazzi, Curt

2017-01-01

Land-based sediment and contaminant runoff is a major threat to coral reefs, and runoff reduction efforts would benefit from knowledge of specific runoff sources. Geochemical signatures of small drainage basins were determined in the fine fraction of soil and sediment, then used in the nearshore region of a coral reef-fringed urban embayment on southeast Oahu, Hawaii, to describe sources and dispersal of land-based runoff. The sedimentary rare earth element ratio (La/Yb)N showed a clear distinction between the two main rock types in the overall contributing area, tholeiitic and alkalic olivine basalt. Based on this geochemical signature it was apparent that the majority of terrigenous sediment on the reef flat originated from geologically old tholeiitic drainages. Sediment from one of five tholeiitic drainages had a distinct geochemical signature, and sediment with this signature was dispersed on the reef flat 2 km west and 150 m offshore of the contributing basin. Sediment and the anthropogenic metals Cd, Pb, and Zn were entrained in runoff from the most heavily urbanized region of the watershed. Although anthropogenic Cd and Zn had localized distributions close to shore, anthropogenic Pb was found associated with fine sediment on the westernmost part of the reef flat and 400 m offshore, illustrating how trade-wind-driven sediment transport can increase the scale of runoff impacts to nearshore communities. Our findings show that sediment geochemical signatures can provide insights about the source and dispersal of land-based runoff in shallow coastal environments. The application of such knowledge to watershed management and habitat remediation efforts can aid in the protection and restoration of runoff-impacted coastal ecosystems worldwide.

Community production modulates coral reef pH and the sensitivity of ecosystem calcification to ocean acidification

NASA Astrophysics Data System (ADS)

DeCarlo, Thomas M.; Cohen, Anne L.; Wong, George T. F.; Shiah, Fuh-Kwo; Lentz, Steven J.; Davis, Kristen A.; Shamberger, Kathryn E. F.; Lohmann, Pat

2017-01-01

Coral reefs are built of calcium carbonate (CaCO3) produced biogenically by a diversity of calcifying plants, animals, and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a 2 week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the nonbleaching period was ˜8.5, significantly elevated above that of the surrounding open ocean (˜8.0-8.1) as a consequence of daytime NEP (up to 112 mmol C m-2 h-1). Diurnal-averaged NEC was 390 ± 90 mmol CaCO3 m-2 d-1, higher than any other coral reef studied to date despite comparable calcifier cover (25%) and relatively high fleshy algal cover (19%). Coral bleaching linked to elevated temperatures significantly reduced daytime NEP by 29 mmol C m-2 h-1. pH on the reef flat declined by 0.2 units, causing a 40% reduction in NEC in the absence of pH changes in the surrounding open ocean. Our findings highlight the interactive relationship between carbonate chemistry of coral reef ecosystems and ecosystem production and calcification rates, which are in turn impacted by ocean warming. As open-ocean waters bathing coral reefs warm and acidify over the 21st century, the health and composition of reef benthic communities will play a major role in determining on-reef conditions that will in turn dictate the ecosystem response to climate change.

Carbonate system parameters of an algal-dominated reef along West Maui

NASA Astrophysics Data System (ADS)

Prouty, Nancy G.; Yates, Kimberly K.; Smiley, Nathan; Gallagher, Chris; Cheriton, Olivia; Storlazzi, Curt D.

2018-04-01

Constraining coral reef metabolism and carbon chemistry dynamics are fundamental for understanding and predicting reef vulnerability to rising coastal CO2 concentrations and decreasing seawater pH. However, few studies exist along reefs occupying densely inhabited shorelines with known input from land-based sources of pollution. The shallow coral reefs off Kahekili, West Maui, are exposed to nutrient-enriched, low-pH submarine groundwater discharge (SGD) and are particularly vulnerable to the compounding stressors from land-based sources of pollution and lower seawater pH. To constrain the carbonate chemistry system, nutrients and carbonate chemistry were measured along the Kahekili reef flat every 4 h over a 6-day sampling period in March 2016. Abiotic process - primarily SGD fluxes - controlled the carbonate chemistry adjacent to the primary SGD vent site, with nutrient-laden freshwater decreasing pH levels and favoring undersaturated aragonite saturation (Ωarag) conditions. In contrast, diurnal variability in the carbonate chemistry at other sites along the reef flat was driven by reef community metabolism. Superimposed on the diurnal signal was a transition during the second sampling period to a surplus of total alkalinity (TA) and dissolved inorganic carbon (DIC) compared to ocean endmember TA and DIC measurements. A shift from positive net community production and positive net community calcification to negative net community production and negative net community calcification was identified. This transition occurred during a period of increased SGD-driven nutrient loading, lower wave height, and reduced current speeds. This detailed study of carbon chemistry dynamics highlights the need to incorporate local effects of nearshore oceanographic processes into predictions of coral reef vulnerability and resilience.

Evidence of chronic anthropogenic nutrient within coastal lagoon reefs adjacent to urban and tourism centers, Kenya: A stable isotope approach.

PubMed

Mwaura, Jelvas; Umezawa, Yu; Nakamura, Takashi; Kamau, Joseph

2017-06-30

The source of anthropogenic nutrient and its spatial extent in three fringing reefs with differing human population gradients in Kenya were investigated using stable isotope approaches. Nutrient concentrations and nitrate-δ 15 N in seepage water indicated that population density and tourism contributed greatly to the extent of nutrient loading to adjacent reefs. Although water-column nutrient analyses did not show any significant difference among the reefs, higher δ 15 N and N contents in macrophytes showed terrestrial nutrients affected primary producers in onshore areas in Nyali and Bamburi reefs, but were mitigated by offshore water intrusion especially at Nyali. On the offshore reef flat, where the same species of macroalgae were not available, complementary use of δ 15 N in sedimentary organic matter suggested inputs of nutrients originated from the urban city of Mombasa. If population increases in the future, nutrient conditions in the shallower reef, Vipingo, may be dramatically degraded due to lower water exchange ratio. Copyright © 2017 Elsevier Ltd. All rights reserved.

Radar signal return from near-shore surface and shallow subsurface features, Darien Province, Panama

NASA Technical Reports Server (NTRS)

Hanson, B. C.; Dellwig, L. F.

1973-01-01

The AN/APQ-97 radar imagery over eastern Panama is analyzed. The imagery was directed toward extraction of geologic and engineering data and the establishment of operational parameters. Subsequent investigations emphasized landform identification and vegetation distribution. The parameters affecting the observed return signal strength from such features are considered. Near-shore ocean phenomena were analyzed. Tidal zone features such as mud flats and reefs were identified in the near range, but were not detectable in the far range. Surface roughness dictated the nature of reflected energy (specular or diffuse). In surf zones, changes in wave train orientation relative to look direction, the slope of the surface, and the physical character of the wave must be considered. It is concluded that the establishment of the areal extent of the tidal flats, distributary channels, and reefs is practical only in the near to intermediate range under minimal low tide conditions.

Patterns in Temporal Variability of Temperature, Oxygen and pH along an Environmental Gradient in a Coral Reef

PubMed Central

Guadayol, Òscar; Silbiger, Nyssa J.; Donahue, Megan J.; Thomas, Florence I. M.

2014-01-01

Spatial and temporal environmental variability are important drivers of ecological processes at all scales. As new tools allow the in situ exploration of individual responses to fluctuations, ecologically meaningful ways of characterizing environmental variability at organism scales are needed. We investigated the fine-scale spatial heterogeneity of high-frequency temporal variability in temperature, dissolved oxygen concentration, and pH experienced by benthic organisms in a shallow coastal coral reef. We used a spatio-temporal sampling design, consisting of 21 short-term time-series located along a reef flat-to-reef slope transect, coupled to a long-term station monitoring water column changes. Spectral analyses revealed sharp gradients in variance decomposed by frequency, as well as differences between physically-driven and biologically-reactive parameters. These results highlight the importance of environmental variance at organismal scales and present a new sampling scheme for exploring this variability in situ. PMID:24416364

Diurnal warming in shallow coastal seas: Observations from the Caribbean and Great Barrier Reef regions

NASA Astrophysics Data System (ADS)

Zhu, X.; Minnett, P. J.; Berkelmans, R.; Hendee, J.; Manfrino, C.

2014-07-01

A good understanding of diurnal warming in the upper ocean is important for the validation of satellite-derived sea surface temperature (SST) against in-situ buoy data and for merging satellite SSTs taken at different times of the same day. For shallow coastal regions, better understanding of diurnal heating could also help improve monitoring and prediction of ecosystem health, such as coral reef bleaching. Compared to its open ocean counterpart which has been studied extensively and modeled with good success, coastal diurnal warming has complicating localized characteristics, including coastline geometry, bathymetry, water types, tidal and wave mixing. Our goal is to characterize coastal diurnal warming using two extensive in-situ temperature and weather datasets from the Caribbean and Great Barrier Reef (GBR), Australia. Results showed clear daily warming patterns in most stations from both datasets. For the three Caribbean stations where solar radiation is the main cause of daily warming, the mean diurnal warming amplitudes were about 0.4 K at depths of 4-7 m and 0.6-0.7 K at shallower depths of 1-2 m; the largest warming value was 2.1 K. For coral top temperatures of the GBR, 20% of days had warming amplitudes >1 K, with the largest >4 K. The bottom warming at shallower sites has higher daily maximum temperatures and lower daily minimum temperatures than deeper sites nearby. The averaged daily warming amplitudes were shown to be closely related to daily average wind speed and maximum insolation, as found in the open ocean. Diurnal heating also depends on local features including water depth, location on different sections of the reef (reef flat vs. reef slope), the relative distance from the barrier reef chain (coast vs. lagoon stations vs. inner barrier reef sites vs. outer rim sites); and the proximity to the tidal inlets. In addition, the influence of tides on daily temperature changes and its relative importance compared to solar radiation was quantified by calculating the ratio of power spectrum densities at the principal lunar semidiurnal M2 tide versus 24-hour cycle frequency representing mainly solar radiation forcing, i.e., (PSDM2/PSD24). Despite the fact that GBR stations are generally located at regions with large tidal changes, the tidal effects were modest: 80% of stations showed value of (PSDM2/PSD24) of less than 10%.

Nonlinear Internal Waves on the Inner Shelf: Observations Using a Distributed Temperature Sensing (DTS) System.

NASA Astrophysics Data System (ADS)

Davis, K. A.; Reid, E. C.; Cohen, A. L.

2016-02-01

Internal waves propagating across the continental slope and shelf are transformed by the competing effects of nonlinear steepening and dispersive spreading, forming nonlinear internal waves (NLIWs) that can penetrate onto the shallow inner shelf, often appearing in the form of bottom-propagating nonlinear internal bores or boluses. NLIWs play a significant role in nearshore dynamics with baroclinic current amplitudes on the order of that of wind- and surface wave-driven flows and rapid temperature changes on the order of annual ranges. In June 2014 we used a Distributed Temperature Sensing (DTS) system to give a continuous cross-shelf view of nonlinear internal wave dynamics on the forereef of Dongsha Atoll, a coral reef in the northern South China Sea. A DTS system measures temperature continuously along the length of an optical fiber, resolving meter-to-kilometer spatial scales. This unique view of cross-shelf temperature structure made it possible to observe internal wave reflection, variable propagation speed across the shelf, bolus formation and dissipation. Additionally, we used the DTS data to track internal waves across the shallow fore reef and onto the reef flat and to quantify spatial patterns in temperature variability. Shoaling internal waves are an important process affecting physical variability and water properties on the reef.

Change detection of Bunaken Island coral reefs using 15years of very high resolution satellite images: A kaleidoscope of habitat trajectories.

PubMed

Ampou, Eghbert Elvan; Ouillon, Sylvain; Iovan, Corina; Andréfouët, Serge

2018-06-01

In Bunaken Island (Indonesia), a time-series of very high resolution (2-4m) satellite imagery was used to draw the long-term dynamics of shallow reef flat habitats from 2001 to 2015. Lack of historical georeferenced ground-truth data oriented the analysis towards a scenario-approach based on the monitoring of selected unambiguously-changing habitat polygons characterized in situ in 2014 and 2015. Eight representative scenarios (coral colonization, coral loss, coral stability, and sand colonization by seagrass) were identified. All occurred simultaneously in close vicinity, precluding the identification of a single general cause of changes that could have affected the whole reef. Likely, very fine differences in reef topography, exposure to wind/wave and sea level variations were responsible for the variety of trajectories. While trajectories of reef habitats is a way to measure resilience and coral recovery, here, the 15-year time-series was too short to be able to conclude on the resilience of Bunaken reefs. Copyright © 2017 Elsevier Ltd. All rights reserved.

Geomorphology and sediment transport on a submerged back-reef sand apron: One Tree Reef, Great Barrier Reef

NASA Astrophysics Data System (ADS)

Harris, Daniel L.; Vila-Concejo, Ana; Webster, Jody M.

2014-10-01

Back-reef sand aprons are conspicuous and dynamic sedimentary features in coral reef systems. The development of these features influences the evolution and defines the maturity of coral reefs. However, the hydrodynamic processes that drive changes on sand aprons are poorly understood with only a few studies directly assessing sediment entrainment and transport. Current and wave conditions on a back-reef sand apron were measured during this study and a digital elevation model was developed through topographic and bathymetric surveying of the sand apron, reef flats and lagoon. The current and wave processes that may entrain and transport sediment were assessed using second order small amplitude (Stokes) wave theory and Shields equations. The morphodynamic interactions between current flow and geomorphology were also examined. The results showed that sediment transport occurs under modal hydrodynamic conditions with waves the main force entraining sediment rather than average currents. A morphodynamic relationship between current flow and geomorphology was also observed with current flow primarily towards the lagoon in shallow areas of the sand apron and deeper channel-like areas directing current off the sand apron towards the lagoon or the reef crest. These results show that the short-term mutual interaction of hydrodynamics and geomorphology in coral reefs can result in morphodynamic equilibrium.

Coral colonisation of a shallow reef flat in response to rising sea level: quantification from 35 years of remote sensing data at Heron Island, Australia

NASA Astrophysics Data System (ADS)

Scopélitis, J.; Andréfouët, S.; Phinn, S.; Done, T.; Chabanet, P.

2011-12-01

Observations made on Heron Island reef flat during the 1970s-1990s highlighted the importance of rapid change in hydrodynamics and accommodation space for coral development. Between the 1940s and the 1990s, the minimum reef-flat top water level varied by some tens of centimetres, successively down then up, in rapid response to local engineering works. Coral growth followed sea-level variations and was quantified here for several coral communities using horizontal two-dimensional above water remotely sensed observations. This required seven high spatial resolution aerial photographs and Quickbird satellite images spanning 35 years: 1972, 1979, 1990, 1992, 2002, 2006 and 2007. The coral growth dynamics followed four regimes corresponding to artificially induced changes in sea levels: 1972-1979 (lowest growth rate): no detectable coral development, due to high tidal currents and minimum mean low-tide water level; 1979-1991 (higher growth rate): horizontal coral development promoted by calmer hydrodynamic conditions; 1991-2001(lower growth rate): vertical coral development, induced by increased local sea level by ~12 cm due to construction of new bund walls; 2001-2007 (highest growth rate): horizontal coral development after that vertical growth had become limited by sea level. This unique time-series displays a succession of ecological stage comprising a `catch-up' dynamic in response to a rapid local sea-level rise in spite of the occurrences of the most severe bleaching events on record (1998, 2002) and the decreasing calcification rates reported in massive corals in the northern part of the Great Barrier Reef.

Wave Dissipation on Low- to Super-Energy Coral Reefs

NASA Astrophysics Data System (ADS)

Harris, D. L.

2016-02-01

Coral reefs are valuable, complex and bio-diverse ecosystems and are also known to be one of the most effective barriers to swell events in coastal environments. Previous research has found coral reefs to be remarkably efficient in removing most of the wave energy during the initial breaking and transformation on the reef flats. The rate of dissipation is so rapid that coral reefs have been referred to as rougher than any known coastal barrier. The dissipation of wave energy across reef flats is crucial in maintaining the relatively low-energy conditions in the back reef and lagoonal environments providing vital protection to adjacent beach or coastal regions from cyclone and storm events. A shift in the regulation of wave energy by reef flats could have catastrophic consequences ecologically, socially, and economically. This study examined the dissipation of wave energy during two swell events in Tahiti and Moorea, French Polyesia. Field sites were chosen in varying degrees of exposure and geomorphology from low-energy protected sites (Tiahura, Moorea) to super-energy sites (Teahupo'o, Tahiti). Waves were measured during two moderate to large swell events in cross reef transects using short-term high-resolution pressure transducers. Wave conditions were found to be similar in all back reef locations despite the very different wave exposure at each reef site. However, wave conditions on the reef flats were different and mirrored the variation in wave exposure with depth over the reef flat the primary regulator of reef flat wave height. These results indicate that coral reef flats evolve morphodynamically with the wave climate, which creates coral reef geomorphologies capable of dissipating wave energy that results in similar back reef wave conditions regardless of the offshore wave climate.

Identifying zooplankton community changes between shallow and upper-mesophotic reefs on the Mesoamerican Barrier Reef, Caribbean.

PubMed

Andradi-Brown, Dominic A; Head, Catherine E I; Exton, Dan A; Hunt, Christina L; Hendrix, Alicia; Gress, Erika; Rogers, Alex D

2017-01-01

Mesophotic coral ecosystems (MCEs, reefs 30-150 m) are understudied, yet the limited research conducted has been biased towards large sessile taxa, such as scleractinian corals and sponges, or mobile taxa such as fishes. Here we investigate zooplankton communities on shallow reefs and MCEs around Utila on the southern Mesoamerican Barrier Reef using planktonic light traps. Zooplankton samples were sorted into broad taxonomic groups. Our results indicate similar taxonomic zooplankton richness and overall biomass between shallow reefs and MCEs. However, the abundance of larger bodied (>2 mm) zooplanktonic groups, including decapod crab zoea, mysid shrimps and peracarid crustaceans, was higher on MCEs than shallow reefs. Our findings highlight the importance of considering zooplankton when identifying broader reef community shifts across the shallow reef to MCE depth gradient.

The influence of sea level and cyclones on Holocene reef flat development: Middle Island, central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Ryan, E. J.; Smithers, S. G.; Lewis, S. E.; Clark, T. R.; Zhao, J. X.

2016-09-01

The geomorphology and chronostratigraphy of the reef flat (including microatoll ages and elevations) were investigated to better understand the long-term development of the reef at Middle Island, inshore central Great Barrier Reef. Eleven cores across the fringing reef captured reef initiation, framework accretion and matrix sediments, allowing a comprehensive appreciation of reef development. Precise uranium-thorium ages obtained from coral skeletons revealed that the reef initiated ~7873 ± 17 years before present (yBP), and most of the reef was emplaced in the following 1000 yr. Average rates of vertical reef accretion ranged between 3.5 and 7.6 mm yr-1. Reef framework was dominated by branching corals ( Acropora and Montipora). An age hiatus of ~5000 yr between 6439 ± 19 and 1617 ± 10 yBP was observed in the core data and attributed to stripping of the reef structure by intense cyclones during the mid- to late-Holocene. Large shingle ridges deposited onshore and basset edges preserved on the reef flat document the influence of cyclones at Middle Island and represent potential sinks for much of the stripped material. Stripping of the upper reef structure around the outer margin of the reef flat by cyclones created accommodation space for a thin (<1.2 m) veneer of reef growth after 1617 ± 10 yBP that grew over the eroded mid-Holocene reef structure. Although limited fetch and open-water exposure might suggest the reef flat at Middle Island is quite protected, our results show that high-energy waves presumably generated by cyclones have significantly influenced both Holocene reef growth and contemporary reef flat geomorphology.

Drowned reefs and antecedent karst topography, Au'au channel, S.E. Hawaiian Islands

USGS Publications Warehouse

Grigg, R.W.; Grossman, E.E.; Earle, S.A.; Gittings, S.R.; Lott, D.; McDonough, J.

2002-01-01

During the last glacial maximum (LGM), about 21,000 years ago, the Hawaiian Islands of Maui, Lanai, and Molokai were interconnected by limestone bridges, creating a super-island known as Maui-Nui. Approximately 120 m of sea-level rise during the Holocene Transgression flooded, and then drowned, these bridges separating the islands by inter-island channels. A new multibeam high-resolution bathymetric survey of the channels between the islands, coupled with observations and video-transects utilizing DeepWorker-2000 submersibles, has revealed the existence of numerous drowned reef features including concentric solution basins, solution ridges (rims), sand and sediment plains, and conical-shaped reef pinnacles. The concentric basins contain flat lagoon-like bottoms that are rimmed by steep-sided limestone walls. Undercut notches rim the basins at several depths, marking either sea-level still stands or paleo-lake levels. All of the solution basins shallower than 120 m were subaerial at the LGM, and at one stage or another may have been shallow shoreline lakes. Today, about 70 drowned reef pinnacles are scattered across the Maui-Lanai underwater bridge and all are situated in wave-sheltered positions. Most drowned during the interval between 14,000 and 10,000 years ago when sea-level rise averaged 15 mm/year. Virtually all of the surficial topography in the Au'au Channel today is a product of karst processes accentuated by marginal reef growth during the Holocene. Both the submerged basins and the drowned reefs represent an archive of sea-level and climate history in Hawaii during the late Quaternary.

Variability in chemical defense across a shallow to mesophotic depth gradient in the Caribbean sponge Plakortis angulospiculatus

NASA Astrophysics Data System (ADS)

Slattery, Marc; Gochfeld, Deborah J.; Diaz, M. Cristina; Thacker, Robert W.; Lesser, Michael P.

2016-03-01

The transition between shallow and mesophotic coral reef communities in the tropics is characterized by a significant gradient in abiotic and biotic conditions that could result in potential trade-offs in energy allocation. The mesophotic reefs in the Bahamas and the Cayman Islands have a rich sponge fauna with significantly greater percent cover of sponges than in their respective shallow reef communities, but relatively low numbers of spongivores. Plakortis angulospiculatus, a common sponge species that spans the depth gradient from shallow to mesophotic reefs in the Caribbean, regenerates faster following predation and invests more energy in protein synthesis at mesophotic depths compared to shallow reef conspecifics. However, since P. angulospiculatus from mesophotic reefs typically contain lower concentrations of chemical feeding deterrents, they are not able to defend new tissue from predation as efficiently as conspecifics from shallow reefs. Nonetheless, following exposure to predators on shallow reefs, transplanted P. angulospiculatus from mesophotic depths developed chemical deterrence to predatory fishes. A survey of bioactive extracts indicated that a specific defensive metabolite, plakortide F, varied in concentration with depth, producing altered deterrence between shallow and mesophotic reef P. angulospiculatus. Different selective pressures in shallow and mesophotic habitats have resulted in phenotypic plasticity within this sponge species that is manifested in variable chemical defense and tissue regeneration at wound sites.

Standing crop and sediment production of reef-dwelling foraminifera on O'ahu, Hawai'i

USGS Publications Warehouse

Harney, J.N.; Hallock, P.; Fletcher, C. H.; Richmond, B.M.

1999-01-01

Most of O'ahu's nearshore and beach sands are highly calcareous and of biogenic origin. The pale-colored constituent grains are the eroded remains of carbonate shells and skeletons produced by marine organisms living atop the island's fringing reefs and in the shallow waters near shore. Previous studies have shown that the tests of symbiont-bearing benthic foraminifera compose a substantial portion (up to one-fourth) of these organically produced sands. We sampled a variety of reef flat and slope habitats to obtain standing-crop data and production estimates for several sand-producing genera of reef-dwelling foraminifera. We found that modern communities of these shelled protists occur in dense numbers islandwide, reaching densities up to 105 individuals per square meter of suitable substrate in the more productive habitats. Further research on the contribution of foraminifera to beach, nearshore, and offshore sands is planned for O'ahu and neighboring islands to describe their roles in the sediment budget more completely.

Low-canopy seagrass beds still provide important coastal protection services.

PubMed

Christianen, Marjolijn J A; van Belzen, Jim; Herman, Peter M J; van Katwijk, Marieke M; Lamers, Leon P M; van Leent, Peter J M; Bouma, Tjeerd J

2013-01-01

One of the most frequently quoted ecosystem services of seagrass meadows is their value for coastal protection. Many studies emphasize the role of above-ground shoots in attenuating waves, enhancing sedimentation and preventing erosion. This raises the question if short-leaved, low density (grazed) seagrass meadows with most of their biomass in belowground tissues can also stabilize sediments. We examined this by combining manipulative field experiments and wave measurements along a typical tropical reef flat where green turtles intensively graze upon the seagrass canopy. We experimentally manipulated wave energy and grazing intensity along a transect perpendicular to the beach, and compared sediment bed level change between vegetated and experimentally created bare plots at three distances from the beach. Our experiments showed that i) even the short-leaved, low-biomass and heavily-grazed seagrass vegetation reduced wave-induced sediment erosion up to threefold, and ii) that erosion was a function of location along the vegetated reef flat. Where other studies stress the importance of the seagrass canopy for shoreline protection, our study on open, low-biomass and heavily grazed seagrass beds strongly suggests that belowground biomass also has a major effect on the immobilization of sediment. These results imply that, compared to shallow unvegetated nearshore reef flats, the presence of a short, low-biomass seagrass meadow maintains a higher bed level, attenuating waves before reaching the beach and hence lowering beach erosion rates. We propose that the sole use of aboveground biomass as a proxy for valuing coastal protection services should be reconsidered.

Holocene Core Logs and Site Statistics for Modern Patch-Reef Cores: Biscayne National Park, Florida

USGS Publications Warehouse

Reich, Christopher D.; Hickey, T. Don; DeLong, Kristine L.; Poore, Richard Z.; Brock, John C.

2009-01-01

The bedrock in Biscayne National Park (BNP), a 1,730-square kilometer (km2) region off southeast Florida, consists of Pleistocene (1.8 million years ago (Ma) to 10,000 years ago (ka)) and Holocene (10 ka to present) carbonate rocks (Enos and Perkins, 1977; Halley and others, 1997; Multer and others, 2002). Most of the surficial limestone in BNP, including the islands of the Florida Keys, was formed at ~125 ka during the highstand of marine oxygen-isotope substage 5e, when sea level was approximately 6 meters (m) higher than today (Chappell and Shackleton, 1986; Multer and others, 2002; Lidz and others, 2003; Siddall and others, 2003; Balsillie and Donoghue, 2004). During the substage-5e regression, the entire Florida Platform became exposed. Subaerial exposure lasted for approximately 115,000 years (kyr), which resulted in erosion and enhancement of karst-like features (Lidz and others, 2006). As the Holocene transgression began to flood the Florida shelf ~7 to 6 ka, the bedrock depression under Biscayne Bay began to flood, and Holocene coral and reef debris laid the foundation for the present reef system (Enos and Perkins, 1977; Lighty and others, 1982; Toscano and Macintyre, 2003; Lidz and others, 2006). More than 3,000 patch reefs exist within the BNP boundary. Most contain hermatypic corals of various species such as those belonging to Montastrea, Diploria, Siderastrea, Porites, Acropora, and Agaricia. Patch reefs within BNP have two morphologies: pinnacle and flat top. Experimental Advanced Airborne Research Lidar (EAARL) data collected along the offshore BNP coral reef tract show that these two morphologies are clearly defined both in the high-resolution bathymetry maps produced by the Lidar data and by statistical analyses of the Lidar dataset (Brock and others, 2008). Brock and others (2008) also show that the pinnacle patch reefs are deeper than the more shallow, broad, and flat patch reefs. The control for these two patch-reef morphologies is unclear; however, their shapes may be due to a slightly lowered sea level or a stillstand in the middle-Holocene around 4 ka that caused erosion of the shallower reefs and allowed the deeper reefs to remain unaffected. Lidz and others (2006) have suggested a stillstand around 4 ka that carved a 2.5-kilometer (km)-wide nearshore rock ledge into the seaward side of every island in the Florida Keys. The objectives of this study were to sample living corals to understand the more recent (<200 years) changes in climate and environmental conditions of the area and to investigate the Holocene (in this case, <8,000 years in the Florida Keys) depositional history at progressively deeper patch-reef sites. This report provides statistics for the cores and core sites and a basic lithologic description of these Holocene cores.

Sediment transport in the presence of large reef bottom roughness

USGS Publications Warehouse

Pomeroy, Andrew; Lowe, Ryan J.; Ghisalberti, Marco; Storlazzi, Curt; Symonds, Graham; Roelvink, Dano

2017-01-01

The presence of large bottom roughness, such as that formed by benthic organisms on coral reef flats, has important implications for the size, concentration, and transport of suspended sediment in coastal environments. A 3 week field study was conducted in approximately 1.5 m water depth on the reef flat at Ningaloo Reef, Western Australia, to quantify the cross-reef hydrodynamics and suspended sediment dynamics over the large bottom roughness (∼20–40 cm) at the site. A logarithmic mean current profile consistently developed above the height of the roughness; however, the flow was substantially reduced below the height of the roughness (canopy region). Shear velocities inferred from the logarithmic profile and Reynolds stresses measured at the top of the roughness, which are traditionally used in predictive sediment transport formulations, were similar but much larger than that required to suspend the relatively coarse sediment present at the bed. Importantly, these stresses did not represent the stresses imparted on the sediment measured in suspension and are therefore not relevant to the description of suspended sediment transport in systems with large bottom roughness. Estimates of the bed shear stresses that accounted for the reduced near-bed flow in the presence of large roughness vastly improved the relationship between the predicted and observed grain sizes that were in suspension. Thus, the impact of roughness, not only on the overlying flow but also on bed stresses, must be accounted for to accurately estimate suspended sediment transport in regions with large bottom roughness, a common feature of many shallow coastal ecosystems.

Scale-dependent effects of habitat on movements and path structure of reef sharks at a predator-dominated atoll.

PubMed

Papastamatiou, Yannis P; Lowe, Christopher G; Caselle, Jennifer E; Friedlander, Alan M

2009-04-01

The effects of habitat on the ecology, movements, and foraging strategies of marine apex predators are largely unknown. We used acoustic telemetry to quantify the movement patterns of blacktip reef sharks (Carcharhinus melanopterus) at Palmyra Atoll National Wildlife Refuge, in the Pacific Ocean. Sharks had relatively small home ranges over a timescale of days to weeks (0.55 +/- 0.24 km2) and showed strong site fidelity to sand-flat ledges within the west lagoon over a three-year period. Sharks showed evidence of diel and tidal movements, and they utilized certain regions of the west lagoon disproportionately. There were ontogenetic shifts in habitat selection, with smaller sharks showing greater selection for sand-flat habitats, and pups (total length 35-61 cm) utilizing very shallow waters on sand-flats, potentially as nursery areas. Adult sharks selected ledge habitats and had lower rates of movement when over sand-flats and ledges than they did over lagoon waters. Fractal analysis of movements showed that over periods of days, sharks used patches that were 3-17% of the scale of their home range. Repeat horizontal movements along ledge habitats consisted of relatively straight movements, which theoretical models consider the most efficient search strategy when forage patches may be spatially and temporally unpredictable. Although sharks moved using a direct walk while in patches, they appeared to move randomly between patches. Microhabitat quantity and quality had large effects on blacktip reef shark movements, which have consequences for the life-history characteristics of the species and potentially the spatial distribution of behaviorally mediated effects on lower trophic levels throughout the Palmyra ecosystem.

Carbonate Production by Benthic Communities on Shallow Coralgal Reefs of Abrolhos Bank, Brazil.

PubMed

Reis, Vanessa Moura Dos; Karez, Cláudia Santiago; Mariath, Rodrigo; de Moraes, Fernando Coreixas; de Carvalho, Rodrigo Tomazetto; Brasileiro, Poliana Silva; Bahia, Ricardo da Gama; Lotufo, Tito Monteiro da Cruz; Ramalho, Laís Vieira; de Moura, Rodrigo Leão; Francini-Filho, Ronaldo Bastos; Pereira-Filho, Guilherme Henrique; Thompson, Fabiano Lopes; Bastos, Alex Cardoso; Salgado, Leonardo Tavares; Amado-Filho, Gilberto Menezes

2016-01-01

The abundance of reef builders, non-builders and the calcium carbonate produced by communities established in Calcification Accretion Units (CAUs) were determined in three Abrolhos Bank shallow reefs during the period from 2012 to 2014. In addition, the seawater temperature, the irradiance, and the amount and composition of the sediments were determined. The inner and outer reef arcs were compared. CAUs located on the inner reef shelf were under the influence of terrigenous sediments. On the outer reefs, the sediments were composed primarily of marine biogenic carbonates. The mean carbonate production in shallow reefs of Abrolhos was 579 ± 98 g m-2 y-1. The builder community was dominated by crustose coralline algae, while the non-builder community was dominated by turf. A marine heat wave was detected during the summer of 2013-2014, and the number of consecutive days with a temperature above or below the summer mean was positively correlated with the turf cover increase. The mean carbonate production of the shallow reefs of Abrolhos Bank was greater than the estimated carbonate production measured for artificial structures on several other shallow reefs of the world. The calcimass was higher than the non-calcareous mass, suggesting that the Abrolhos reefs are still in a positive carbonate production balance. Given that marine heat waves produce an increase of turf cover on the shallow reefs of the Abrolhos, a decrease in the cover represented by reef builders and shifting carbonate production are expected in the near future.

Carbonate Production by Benthic Communities on Shallow Coralgal Reefs of Abrolhos Bank, Brazil

PubMed Central

dos Reis, Vanessa Moura; Karez, Cláudia Santiago; Mariath, Rodrigo; de Moraes, Fernando Coreixas; de Carvalho, Rodrigo Tomazetto; Brasileiro, Poliana Silva; Bahia, Ricardo da Gama; Lotufo, Tito Monteiro da Cruz; Ramalho, Laís Vieira; de Moura, Rodrigo Leão; Francini-Filho, Ronaldo Bastos; Pereira-Filho, Guilherme Henrique; Thompson, Fabiano Lopes; Bastos, Alex Cardoso; Salgado, Leonardo Tavares; Amado-Filho, Gilberto Menezes

2016-01-01

The abundance of reef builders, non-builders and the calcium carbonate produced by communities established in Calcification Accretion Units (CAUs) were determined in three Abrolhos Bank shallow reefs during the period from 2012 to 2014. In addition, the seawater temperature, the irradiance, and the amount and composition of the sediments were determined. The inner and outer reef arcs were compared. CAUs located on the inner reef shelf were under the influence of terrigenous sediments. On the outer reefs, the sediments were composed primarily of marine biogenic carbonates. The mean carbonate production in shallow reefs of Abrolhos was 579 ± 98 g m-2 y-1. The builder community was dominated by crustose coralline algae, while the non-builder community was dominated by turf. A marine heat wave was detected during the summer of 2013–2014, and the number of consecutive days with a temperature above or below the summer mean was positively correlated with the turf cover increase. The mean carbonate production of the shallow reefs of Abrolhos Bank was greater than the estimated carbonate production measured for artificial structures on several other shallow reefs of the world. The calcimass was higher than the non-calcareous mass, suggesting that the Abrolhos reefs are still in a positive carbonate production balance. Given that marine heat waves produce an increase of turf cover on the shallow reefs of the Abrolhos, a decrease in the cover represented by reef builders and shifting carbonate production are expected in the near future. PMID:27119151

Numerical modeling of the impact of sea-level rise on fringing coral reef hydrodynamics and sediment transport

USGS Publications Warehouse

Storlazzi, C.D.; Elias, E.; Field, M.E.; Presto, M.K.

2011-01-01

Most climate projections suggest that sea level may rise on the order of 0.5-1.0 m by 2100; it is not clear, however, how fluid flow and sediment dynamics on exposed fringing reefs might change in response to this rapid sea-level rise. Coupled hydrodynamic and sediment-transport numerical modeling is consistent with recent published results that suggest that an increase in water depth on the order of 0.5-1.0 m on a 1-2 m deep exposed fringing reef flat would result in larger significant wave heights and setup, further elevating water depths on the reef flat. Larger waves would generate higher near-bed shear stresses, which, in turn, would result in an increase in both the size and the quantity of sediment that can be resuspended from the seabed or eroded from adjacent coastal plain deposits. Greater wave- and wind-driven currents would develop with increasing water depth, increasing the alongshore and offshore flux of water and sediment from the inner reef flat to the outer reef flat and fore reef where coral growth is typically greatest. Sediment residence time on the fringing reef flat was modeled to decrease exponentially with increasing sea-level rise as the magnitude of sea-level rise approached the mean water depth over the reef flat. The model results presented here suggest that a 0.5-1.0 m rise in sea level will likely increase coastal erosion, mixing and circulation, the amount of sediment resuspended, and the duration of high turbidity on exposed reef flats, resulting in decreased light availability for photosynthesis, increased sediment-induced stress on the reef ecosystem, and potentially affecting a number of other ecological processes.

Last interglacial (MIS5e) sea-levels and uplift along the north-east Gulf of Aqaba

NASA Astrophysics Data System (ADS)

BAR (KOHN), N.; Stein, M.; Agnon, A.; Yehudai, M.; Lazar, B.; Shaked, Y.

2014-12-01

An uplifted flight of coral reef terraces, extending along the north-east margin of the Gulf of Aqaba (GOA), provides evidence for uplift rates and sea level high stands. GOA fills a narrow and deep tectonic depression lying along the southern sector of the Dead Sea Transform where it meets the Red Sea. This special configuration of the GOA and its latitude turn it into a dependable paleo-sea level monitor, sensitive only to global eustatic changes and local tectonic movements. A sequence of five uplifted coral reef terraces were mapped and characterized on basis of morphology and reef-facies, and their elevation above the present sea level was determined. The fossil reefs studied comprise fringing reefs, some with clear reef-structure that includes a reef flat and a shallow back lagoon. Most outcrops in the study area represent a transgressive sequence in which, during its highest stand, formed fringing reef terraces. We use U-Th ages of fossil corals samples found in growth position at various terraces. Corals from three uplifted reef terraces, R1, R2, and R3 were dated to the last interglacial period particularly to marine isotope stage (MIS) 5e. These ages were achieved from mainly calcitic corals (recrystallized in a freshwater phreatic environment). A few ages were derived from aragonite corals. The three terraces represent three sub-stages within MIS5e: R3 formed during a short standstill at ~130 ka BP; R2 formed during a long and steady standstill between ~128 to ~121 ka BP; and R1 represents a short standstill at ~117 ka BP. Assuming that terrace reef flats represent past sea level high stands, we calculated the coast average uplift rate and constrained the original terraces elevations. The reconstructed eustatic sea level variation during MIS 5e at GOA resembles observations from reef terraces in other locations. Combined, all indicate a significant sea-level rise from the MIS 6 low stand at ~134-130 ka and followed by a long and stable sea level high stand between ~128 to ~121 ka, representing a major reef building period. The long and stable sea level was followed by additional sea-level rise at ~118-116 ka that transgressed over the "stable reefs".

Facies dimensions within carbonate reservoirs - guidelines from satellite images of modern analogs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harris, P.M.; Kowalik, W.S.

1995-08-01

Modern analogs illustrate the distribution of carbonate facies within an overall depositional setting and can be an integral part of a subsurface geologic model in indicating the dimensions, trend, and interrelationships of facies that might be related to reservoir and non-reservoir distribution. Satellite images from several modern carbonate areas depict the geologic characteristics that can be expected in ancient shallow-water settings. Isolated carbonate platforms- the Bahamas, Caicos Platform in the British West Indies, Chinchorro Bank offshore of Yucatan, and portions of the Belize area; Ramp-style shelf-to-basin transitions - Abu Dhabi and northern Yucatan; Rimmed shelf margins - South Florida, portionsmore » of Belize, and the Great Barrier Reef of Australia; Broad, deep shelf lagoons - the Great Barrier Reef and Belize; Reef variability - South Florida, the Bahamas, Caicos, Northern Yucatan, and Abu Dhabi; Shallow lagoon/tidal flat settings - South Florida, the Bahamas, Caicos, Northern Yucatan, Shark Bay in Western Australia, Abu Dhabi; Mixed carbonate and siliciclastic depostion - South Florida, Belize, the Great Barrier Reef, Shark Bay and Abu Dhabi. The geologic framework as illustrated by these areas is important at the development scale where lateral variation of porosity and permeability, i.e. reservoir quality, is commonly tied to facies changes and facies dimensions are required as input to reservoir models. The geologic framework is essential at the exploration scale for reservoir facies prediction and stratigraphic play concepts which are related directly to depositional facies patterns.« less

Depth-dependent effects of culling—do mesophotic lionfish populations undermine current management?

PubMed Central

Grey, Rachel; Hendrix, Alicia; Hitchner, Drew; Gress, Erika; Madej, Konrad; Parry, Rachel L.; Régnier-McKellar, Catriona; Jones, Owen P.; Arteaga, María; Izaguirre, Andrea P.; Rogers, Alex D.; Exton, Dan A.

2017-01-01

Invasive lionfish (Pterois volitans and P. miles) have spread widely across the western Atlantic and are recognized as a major threat to native marine biodiversity. Although lionfish inhabit both shallow reefs and mesophotic coral ecosystems (MCEs; reefs from 30 to 150 m depth), the primary management response implemented by many countries has been diver-led culling limited to reefs less than 30 m. However, many reef fish undergo ontogenetic migrations, with the largest and therefore most fecund individuals found at greatest depths. Here, we study lionfish density, body size, maturity and dietary patterns across the depth gradient from the surface down to 85 m on heavily culled reefs around Utila, Honduras. We found lionfish at increased densities, body size and weight on MCEs compared with shallow reefs, with MCEs also containing the greatest proportion of actively spawning females, while shallow reefs contained the greatest proportion of immature lionfish. We then compared lionfish behaviour in response to divers on shallow culled and mesophotic unculled Utilan reefs, and on shallow unculled reefs in Tela Bay, on the Honduran mainland. We found that mesophotic lionfish exhibited high alert distances, consistent with individuals previously exposed to culling despite being below the depth limits of removal. In addition, when examining stomach content, we found that fish were the major component of lionfish diets across the depth gradient. Importantly, our results suggest that despite adjacent shallow culling, MCEs retain substantial lionfish populations that may be disproportionately contributing towards continued lionfish recruitment onto the shallow reefs of Utila, potentially undermining current culling-based management. PMID:28573007

Depth-dependent effects of culling-do mesophotic lionfish populations undermine current management?

PubMed

Andradi-Brown, Dominic A; Grey, Rachel; Hendrix, Alicia; Hitchner, Drew; Hunt, Christina L; Gress, Erika; Madej, Konrad; Parry, Rachel L; Régnier-McKellar, Catriona; Jones, Owen P; Arteaga, María; Izaguirre, Andrea P; Rogers, Alex D; Exton, Dan A

2017-05-01

Invasive lionfish ( Pterois volitans and P. miles ) have spread widely across the western Atlantic and are recognized as a major threat to native marine biodiversity. Although lionfish inhabit both shallow reefs and mesophotic coral ecosystems (MCEs; reefs from 30 to 150 m depth), the primary management response implemented by many countries has been diver-led culling limited to reefs less than 30 m. However, many reef fish undergo ontogenetic migrations, with the largest and therefore most fecund individuals found at greatest depths. Here, we study lionfish density, body size, maturity and dietary patterns across the depth gradient from the surface down to 85 m on heavily culled reefs around Utila, Honduras. We found lionfish at increased densities, body size and weight on MCEs compared with shallow reefs, with MCEs also containing the greatest proportion of actively spawning females, while shallow reefs contained the greatest proportion of immature lionfish. We then compared lionfish behaviour in response to divers on shallow culled and mesophotic unculled Utilan reefs, and on shallow unculled reefs in Tela Bay, on the Honduran mainland. We found that mesophotic lionfish exhibited high alert distances, consistent with individuals previously exposed to culling despite being below the depth limits of removal. In addition, when examining stomach content, we found that fish were the major component of lionfish diets across the depth gradient. Importantly, our results suggest that despite adjacent shallow culling, MCEs retain substantial lionfish populations that may be disproportionately contributing towards continued lionfish recruitment onto the shallow reefs of Utila, potentially undermining current culling-based management.

Linking Wave Forcing to Coral Cover and Structural Complexity Across Coral Reef Flats

NASA Astrophysics Data System (ADS)

Harris, D. L.; Rovere, A.; Parravicini, V.; Casella, E.

2015-12-01

The hydrodynamic regime is a significant component in the geomorphic and ecological development of coral reefs. The energy gradients and flow conditions generated by the breaking and transformation of waves across coral reef crests and flats drive changes in geomorphic structure, and coral growth form and distribution. One of the key aspects in regulating the wave energy propagating across reef flats is the rugosity or roughness of the benthic substrate. Rugosity and structural complexity of coral reefs is also a key indicator of species diversity, ecological functioning, and reef health. However, the links between reef rugosity, coral species distribution and abundance, and hydrodynamic forcing are poorly understood. In this study we examine this relationship by using high resolution measurement of waves in the surf zone and coral reef benthic structure.Pressure transducers (logging at 4 Hz) were deployed in cross reef transects at two sites (Tiahura and Ha'apiti reef systems) in Moorea, French Polynesia with wave characteristics determined on a wave by wave basis. A one dimensional hydrodynamic model (XBeach) was calibrated from this data to determine wave processes on the reef flats under average conditions. Transects of the reef benthic structure were conducted using photographic analysis and the three dimensional reef surface was constructed using structure from motion procedures. From this analysis reef rugosity, changes in coral genus and growth form, and across reef shifts in benthic community were determined. The results show clear changes in benthic assemblages along wave energy gradients with some indication of threshold values of wave induced bed shear stress above which live coral cover was reduced. Reef rugosity was shown to be significantly along the cross-reef transect which has important implications for accurate assessment of wave dissipation across coral reef flats. Links between reef rugosity and coral genus were also observed and may indicate that some coral species are crucial in maintaining the structural diversity of coral reefs.

Occurrence of brackish water phytoplankton species at a closed coral reef in Nansha Islands, South China Sea.

PubMed

Shen, Ping-Ping; Tan, Ye-Hui; Huang, Liang-Min; Zhang, Jian-Lin; Yin, Jian-Qiang

2010-10-01

The phytoplankton assemblage of Zhubi Reef, a closed coral reef in Nansha Islands (South China Sea, SCS) was studied in June 2007. A total of 92 species belonging to 53 genera and four phyla have been identified. The dominant taxa in the lagoon were the diatom Chaetoceros and cyanobacteria Nostoc and Microcystis, while in reef flats were cyanobacteria Trichodesmium erythraeum, dinoflagellates Gymnodinium and Prorocentrum. The species richness and diversity were consistently lower in the lagoon than in reef flats. Classification and nMDS ordination also revealed significant dissimilarity in phytoplankton community structure between the reef flat and lagoon, with statistical difference in species composition and abundance between them (ANOSIM, p=0.025). Nutrient concentrations also spatially varied, with ammonium-enrichment in the lagoon, while high Si-concentration existed in reef flat areas. Both nutrient levels and currents in SCS may play important roles in determining the composition and distribution of microalgae in Zhubi Reef and SCS. Copyright © 2010 Elsevier Ltd. All rights reserved.

Sediment resuspension and transport patterns on a fringing reef flat, Molokai, Hawaii

USGS Publications Warehouse

Ogston, A.S.; Storlazzi, C.D.; Field, M.E.; Presto, M.K.

2004-01-01

Corals are known to flourish in various turbid environments around the world. The quantitative distinction between clear and turbid water in coral habitats is not well defined nor are the amount of sediment in suspension and rates of sedimentation used to evaluate the condition of reef environments well established. This study of sediment resuspension, transport, and resulting deposition on a fringing reef flat off Molokai, Hawaii, uses a year of time-series data from a small, instrumented tripod. It shows the importance of trade winds and ocean wave heights in controlling the movement of sediment. Sediment is typically resuspended daily and the dominant controls on the magnitude of events (10-25 mg/l) are the trade-wind-generated waves and currents and tidal elevation on the reef flat. The net flux of sediment on this reef is primarily along the reef flat in the direction of the prevailing trade winds (to the west), with a secondary direction of slightly offshore, towards a zone of low coral abundance. These results have application to reef studies and reef management in other areas in several ways. First, the observed resuspension and turbidity results from fine-grained terrigenous sediment that appears to be trapped and recycled on the reef flat. Thus corals are subjected to light attenuation by the same particles repeatedly, however small the amount. Secondly, the measurements show high temporal variability (from daily to seasonal scales) of sediment resuspension, indicating that single measurements are inadequate to accurately describe conditions on a reef flat. ?? Springer-Verlag 2004.

A deep reef in deep trouble

USGS Publications Warehouse

Menza, Charles; Kendall, M.; Rogers, C.; Miller, J.

2007-01-01

The well-documented degradation of shallower reefs which are often closer to land and more vulnerable to pollution, sewage and other human-related stressors has led to the suggestion that deeper, more remote offshore reefs could possibly serve as sources of coral and fish larvae to replenish the shallower reefs. Yet, the distribution, status, and ecological roles of deep (>30 m) Caribbean reefs are not well known. In this report, an observation of a deep reef which has undergone a recent extensive loss of coral cover is presented. In stark contrast to the typical pattern of coral loss in shallow reefs, the deeper corals were most affected. This report is the first description of such a pattern of coral loss on a deep reef.

Distribution and sediment production of large benthic foraminifers on reef flats of the Majuro Atoll, Marshall Islands

NASA Astrophysics Data System (ADS)

Fujita, K.; Osawa, Y.; Kayanne, H.; Ide, Y.; Yamano, H.

2009-03-01

The distributions and population densities of large benthic foraminifers (LBFs) were investigated on reef flats of the Majuro Atoll, Marshall Islands. Annual sediment production by foraminifers was estimated based on population density data. Predominant LBFs were Calcarina and Amphistegina, and the population densities of these foraminifers varied with location and substratum type on reef flats. Both foraminifers primarily attached to macrophytes, particularly turf-forming algae, and were most abundant on an ocean reef flat (ORF) and in an inter-island channel near windward, sparsely populated islands. Calcarina density was higher on windward compared to leeward sides of ORFs, whereas Amphistegina density was similar on both sides of ORFs. These foraminifers were more common on the ocean side relative to the lagoon side of reef flats around a windward reef island, and both were rare or absent in nearshore zones around reef islands and on an ORF near windward, densely populated islands. Foraminiferal production rates varied with the degree to which habitats were subject to water motion and human influences. Highly productive sites (>103 g CaCO3 m-2 year-1) included an ORF and an inter-island channel near windward, sparsely populated islands, and a seaward area of a reef flat with no reef islands. Low-productivity sites (<10 g CaCO3 m-2 year-1) included generally nearshore zones of lagoonal reef flats, leeward ORFs, and a windward ORF near densely populated islands. These results suggest that the distribution and production of LBFs were largely influenced by a combination of natural environmental factors, including water motion, water depth, elevation relative to the lowest tidal level at spring tide, and the distribution of suitable substratum. The presence of reef islands may limit the distribution and production of foraminifers by altering water circulation in nearshore environments. Furthermore, increased anthropogenic factors (population and activities) may adversely affect foraminiferal distribution and production.

Combined infragravity wave and sea-swell runup over fringing reefs by super typhoon Haiyan

NASA Astrophysics Data System (ADS)

Shimozono, Takenori; Tajima, Yoshimitsu; Kennedy, Andrew B.; Nobuoka, Hisamichi; Sasaki, Jun; Sato, Shinji

2015-06-01

Super typhoon Haiyan struck the Philippines on 8 November 2013, marking one of the strongest typhoons at landfall in recorded history. Extreme storm waves attacked the Pacific coast of Eastern Samar where the violent typhoon first made landfall. Our field survey confirmed that storm overwash heights of 6-14 m above mean sea level were distributed along the southeastern coast and extensive inundation occurred in some coastal villages in spite of natural protection by wide fringing reefs. A wave model based on Boussinesq-type equations is constructed to simulate wave transformation over shallow fringing reefs and validated against existing laboratory data. Wave propagation and runup on the Eastern Samar coast are then reproduced using offshore boundary conditions based on a wave hindcast. The model results suggest that extreme waves on the shore are characterized as a superposition of the infragravity wave and sea-swell components. The balance of the two components is strongly affected by the reef width and beach slope through wave breaking, frictional dissipation, reef-flat resonances, and resonant runup amplification. Therefore, flood characteristics significantly differ from site to site due to a large variation of the two topographic parameters on the hilly coast. Strong coupling of infragravity waves and sea swells produces extreme runup on steep beaches fronted by narrow reefs, whereas the infragravity waves become dominant over wide reefs and they evolve into bores on steep beaches.

Regional hard coral distribution within geomorphic and reef flat ecological zones determined by satellite imagery of the Xisha Islands, South China Sea

NASA Astrophysics Data System (ADS)

Zuo, Xiuling; Su, Fenzhen; Zhao, Huanting; Zhang, Junjue; Wang, Qi; Wu, Di

2017-05-01

Coral reefs in the Xisha Islands (also known as the Paracel Islands in English), South China Sea, have experienced dramatic declines in coral cover. However, the current regional scale hard coral distribution of geomorphic and ecological zones, essential for reefs management in the context of global warming and ocean acidification, is not well documented. We analyzed data from field surveys, Landsat-8 and GF-1 images to map the distribution of hard coral within geomorphic zones and reef flat ecological zones. In situ surveys conducted in June 2014 on nine reefs provided a complete picture of reef status with regard to live coral diversity, evenness of coral cover and reef health (live versus dead cover) for the Xisha Islands. Mean coral cover was 12.5% in 2014 and damaged reefs seemed to show signs of recovery. Coral cover in sheltered habitats such as lagoon patch reefs and biotic dense zones of reef flats was higher, but there were large regional differences and low diversity. In contrast, the more exposed reef slopes had high coral diversity, along with high and more equal distributions of coral cover. Mean hard coral cover of other zones was <10%. The total Xisha reef system was estimated to cover 1 060 km2, and the emergent reefs covered 787 m2. Hard corals of emergent reefs were considered to cover 97 km2. The biotic dense zone of the reef flat was a very common zone on all simple atolls, especially the broader northern reef flats. The total cover of live and dead coral can reach above 70% in this zone, showing an equilibrium between live and dead coral as opposed to coral and algae. This information regarding the spatial distribution of hard coral can support and inform the management of Xisha reef ecosystems.

Preliminary numerical simulation for shallow strata stability of coral reef in South China Sea

NASA Astrophysics Data System (ADS)

Tang, Qinqin; Zhan, Wenhuan; Zhang, Jinchang

2017-04-01

Coral reefs are the geologic material and special rock and soil, which live in shallow water of the tropic ocean and are formed through biological and geological action. Since infrastructure construction is being increasingly developed on coral reefs during recent years, it is necessary to evaluate the shallow strata stability of coral reefs in the South China Sea. The paper is to study the borehole profiles for shallow strata of coral reefs in the South China Sea, especially in the hydrodynamic marine environment?, and to establish a geological model for numerical simulation with Geo-Studio software. Five drilling holes show a six-layer shallow structure of South China Sea, including filling layer, mid-coarse sand, coral sand gravel, fine sand, limestone debris and reef limestone. The shallow coral reef profile next to lagoon is similar to "layers cake", in which the right side close to the sea is analogous to "block cake". The simulation results show that coral reef stability depends on wave loads and earthquake strength, as well as the physical properties of coral reefs themselves. The safety factor of the outer reef is greater than 10.0 in the static condition, indicating that outer reefs are less affected by the wave and earthquake. However, the safety factor next to lagoon is ranging from 0.1 to 4.9. The main reason for the variations that the strata of coral reefs close to the sea are thick. For example, the thickness of reef limestone is more than 10 m and equivalent to the block. When the thickness of inside strata is less than 10 m, they show weak engineering geological characteristics. These findings can provide useful information for coral reef constructions in future. This work was funded by National Basic Research Program of China (contract: 2013CB956104) and National Natural Science Foundation of China (contract: 41376063).

The influence of sea-level rise on fringing reef sediment dynamics: field observations and numerical modeling

USGS Publications Warehouse

Storlazzi, Curt D.; Field, Michael E.; Elias, Edwin; Presto, M. Katherine

2011-01-01

While most climate projections suggest that sea level may rise on the order of 0.5-1.0 m by 2100, it is not clear how fluid flow and sediment transport on fringing reefs might change in response to this rapid sea-level rise. Field observations and numerical modeling suggest that an increase in water depth on the order of 0.5-1.0 m on a fringing reef flat would result in larger significant wave heights and wave-driven shear stresses, which, in turn, would result in an increase in both the size and quantity of sediment that can be resuspended from the seabed or eroded from coastal plain deposits. Greater wave- and wind-driven currents would develop on the reef flat with increasing water depth, increasing the offshore flux of water and sediment from the inner reef flat to the outer reef flat and fore reef where coral growth is typically greatest.

Swell-generated Set-up and Infragravity Wave Propagation Over a Fringing Coral Reef: Implications for Wave-driven Inundation of Atoll Islands

NASA Astrophysics Data System (ADS)

Cheriton, O. M.; Storlazzi, C. D.; Rosenberger, K. J.; Quataert, E.; van Dongeren, A.

2014-12-01

The Republic of the Marshall Islands is comprised of 1156 islands on 29 low-lying atolls with a mean elevation of 2 m that are susceptible to sea-level rise and often subjected to overwash during large wave events. A 6-month deployment of wave and tide gauges across two shore-normal sections of north-facing coral reef on the Roi-Namur Island on Kwajalein Atoll was conducted during 2013-2014 to quantify wave dynamics and wave-driven water levels on the fringing coral reef. Wave heights and periods on the reef flat were strongly correlated to the water levels. On the fore reef, the majority of wave energy was concentrated in the incident band (5-25 s); due to breaking at the reef crest, however, the wave energy over the reef flat was dominated by infragravity-band (25-250 s) motions. Two large wave events with heights of 6-8 m at 15 s over the fore reef were observed. During these events, infragravity-band wave heights exceeded the incident band wave heights and approximately 1.0 m of set-up was established over the innermost reef flat. This set-up enabled the propagation of large waves across the reef flat, reaching maximum heights of nearly 2 m on the innermost reef flat adjacent to the toe of the beach. XBEACH models of the instrument transects were able to replicate the incident waves, infragravity waves, and wave-driven set-up across the reef when the hydrodynamic roughness of the reef was correctly parameterized. These events led to more than 3 m of wave-driven run-up and inundation of the island that drove substantial morphological change to the beach face.

Reproductive biology of the deep brooding coral Seriatopora hystrix: Implications for shallow reef recovery.

PubMed

Prasetia, Rian; Sinniger, Frederic; Hashizume, Kaito; Harii, Saki

2017-01-01

Mesophotic coral ecosystems (MCEs, between 30 and 150 m depth) are hypothesized to contribute to the recovery of degraded shallow reefs through sexually produced larvae (referred to as Deep Reef Refuge Hypothesis). In Okinawa, Japan, the brooder coral Seriatopora hystrix was reported to be locally extinct in a shallow reef while it was found abundant at a MCE nearby. In this context, S. hystrix represents a key model to test the Deep Reef Refuge Hypothesis and to understand the potential contribution of mesophotic corals to shallow coral reef recovery. However, the reproductive biology of mesophotic S. hystrix and its potential to recolonize shallow reefs is currently unknown. This study reports for the first time, different temporal scales of reproductive periodicity and larval settlement of S. hystrix from an upper mesophotic reef (40 m depth) in Okinawa. We examined reproductive seasonality, lunar, and circadian periodicity (based on polyp dissection, histology, and ex situ planula release observations) and larval settlement rates in the laboratory. Mesophotic S. hystrix reproduced mainly in July and early August, with a small number of planulae being released at the end of May, June and August. Compared to shallow colonies in the same region, mesophotic S. hystrix has a 4-month shorter reproductive season, similar circadian periodicity, and smaller planula size. In addition, most of the planulae settled rapidly, limiting larval dispersal potential. The shorter reproductive season and smaller planula size may result from limited energy available for reproduction at deeper depths, while the similar circadian periodicity suggests that this reproductive aspect is not affected by environmental conditions differing with depth. Overall, contribution of mesophotic S. hystrix to shallow reef rapid recovery appears limited, although they may recruit to shallow reefs through a multistep process over a few generations or through random extreme mixing such as typhoons.

Reproductive biology of the deep brooding coral Seriatopora hystrix: Implications for shallow reef recovery

PubMed Central

Prasetia, Rian; Sinniger, Frederic; Hashizume, Kaito; Harii, Saki

2017-01-01

Mesophotic coral ecosystems (MCEs, between 30 and 150 m depth) are hypothesized to contribute to the recovery of degraded shallow reefs through sexually produced larvae (referred to as Deep Reef Refuge Hypothesis). In Okinawa, Japan, the brooder coral Seriatopora hystrix was reported to be locally extinct in a shallow reef while it was found abundant at a MCE nearby. In this context, S. hystrix represents a key model to test the Deep Reef Refuge Hypothesis and to understand the potential contribution of mesophotic corals to shallow coral reef recovery. However, the reproductive biology of mesophotic S. hystrix and its potential to recolonize shallow reefs is currently unknown. This study reports for the first time, different temporal scales of reproductive periodicity and larval settlement of S. hystrix from an upper mesophotic reef (40 m depth) in Okinawa. We examined reproductive seasonality, lunar, and circadian periodicity (based on polyp dissection, histology, and ex situ planula release observations) and larval settlement rates in the laboratory. Mesophotic S. hystrix reproduced mainly in July and early August, with a small number of planulae being released at the end of May, June and August. Compared to shallow colonies in the same region, mesophotic S. hystrix has a 4-month shorter reproductive season, similar circadian periodicity, and smaller planula size. In addition, most of the planulae settled rapidly, limiting larval dispersal potential. The shorter reproductive season and smaller planula size may result from limited energy available for reproduction at deeper depths, while the similar circadian periodicity suggests that this reproductive aspect is not affected by environmental conditions differing with depth. Overall, contribution of mesophotic S. hystrix to shallow reef rapid recovery appears limited, although they may recruit to shallow reefs through a multistep process over a few generations or through random extreme mixing such as typhoons. PMID:28510601

Reef Fish Community Biomass and Trophic Structure Changes across Shallow to Upper-Mesophotic Reefs in the Mesoamerican Barrier Reef, Caribbean

PubMed Central

Gress, Erika; Wright, Georgina; Exton, Dan A.; Rogers, Alex D.

2016-01-01

Mesophotic coral ecosystems (MCEs; reefs 30-150m depth) are of increased research interest because of their potential role as depth refuges from many shallow reef threats. Yet few studies have identified patterns in fish species composition and trophic group structure between MCEs and their shallow counterparts. Here we explore reef fish species and biomass distributions across shallow to upper-MCE Caribbean reef gradients (5-40m) around Utila, Honduras, using a diver-operated stereo-video system. Broadly, we found reef fish species richness, abundance and biomass declining with depth. At the trophic group level we identified declines in herbivores (both total and relative community biomass) with depth, mostly driven by declines in parrotfish (Scaridae). Piscivores increased as a proportion of the community with increased depth while, in contrast to previous studies, we found no change in relative planktivorous reef fish biomass across the depth gradient. In addition, we also found evidence of ontogenetic migrations in the blue tang (Acanthurus coeruleus), striped parrotfish (Scarus iserti), blue chromis (Chromis cyanea), creole wrasse (Clepticus parrae), bluehead wrasse (Thalassoma bifasciatum) and yellowtail snapper (Ocyurus chrysurus), with a higher proportion of larger individuals at mesophotic and near-mesophotic depths than on shallow reefs. Our results highlight the importance of using biomass measures when considering fish community changes across depth gradients, with biomass generating different results to simple abundance counts. PMID:27332811

Incident wave, infragravity wave, and non-linear low-frequency bore evolution across fringing coral reefs

NASA Astrophysics Data System (ADS)

Storlazzi, C. D.; Griffioen, D.; Cheriton, O. M.

2016-12-01

Coral reefs have been shown to significantly attenuate incident wave energy and thus provide protection for 100s of millions of people globally. To better constrain wave dynamics and wave-driven water levels over fringing coral reefs, a 4-month deployment of wave and tide gauges was conducted across two shore-normal transects on Roi-Namur Island and two transects on Kwajalein Island in the Republic of the Marshall Islands. At all locations, although incident wave (periods <25 s) heights were an order of magnitude greater than infragravity wave (periods > 250 s) heights on the outer reef flat just inshore of the zone of wave breaking, the infragravity wave heights generally equaled the incident wave heights by the middle of the reef flat and exceeded the incident wave heights on the inner reef flat by the shoreline. The infragravity waves generally were asymmetric, positively skewed, bore-like forms with incident-band waves riding the infragravity wave crest at the head of the bore; these wave packets have similar structure to high-frequency internal waves on an internal wave bore. Bore height was shown to scale with water depth, offshore wave height, and offshore wave period. For a given tidal elevation, with increasing offshore wave heights, such bores occurred more frequently on the middle reef flat, whereas they occurred less frequently on the inner reef flat. Skewed, asymmetric waves are known to drive large gradients in velocity and shear stress that can transport material onshore. Thus, a better understanding of these low-frequency, energetic bores on reef flats is critical to forecasting how coral reef-lined coasts may respond to sea-level rise and climate change.

Effects of Submarine Groundwater Discharge (SGD) on the Growth of the Lobe Coral Porites lobata in Maunalua Bay, Hawaii.

NASA Astrophysics Data System (ADS)

Lubarsky, K.

2016-02-01

Submarine groundwater discharge (SGD) constitutes a large percentage of the freshwater inputs onto coastal coral reefs on high islands such as the Hawaiian Islands, although the impact of SGD on coral reef health is currently understudied. In Maunalua Bay, on Oahu, Hawaii, SGD is discharged onto shallow reef flats from discrete seeps, creating natural gradients of water chemistry across the reef flat. We used this system to investigate rates of growth of the lobe coral Porites lobata across a gradient of SGD influence at two study sites within the bay, and to characterize the variation in water chemistry gradient over space and time due to SGD. SGD input at these sites is tidally modulated, and the groundwater itself is brackish and extremely nutrient-rich (mean=190 μM NO3- at the Black Point study site, mean=40 μM NO3- at Wailupe Beach Park), with distinct carbonate signatures at both study sites. Coral nubbins were placed across the gradient for 6 months, and growth was measured using three metrics: surface area (photo analysis), buoyant weight, and linear extension. Various chemical parameters, including pH, salinity, total alkalinity, nutrients, and chlorphyll were sampled at the same locations across the gradient over 24 hour periods in the spring and fall in order to capture spatial and temporal variation in water chemistry due to the SGD plume. Spatial patterns and temporal variation in water chemistry were correlated with the observed spatial patterns in coral growth across the SGD gradient.

Linking Demographic Processes of Juvenile Corals to Benthic Recovery Trajectories in Two Common Reef Habitats

PubMed Central

Doropoulos, Christopher; Ward, Selina; Roff, George; González-Rivero, Manuel; Mumby, Peter J.

2015-01-01

Tropical reefs are dynamic ecosystems that host diverse coral assemblages with different life-history strategies. Here, we quantified how juvenile (<50 mm) coral demographics influenced benthic coral structure in reef flat and reef slope habitats on the southern Great Barrier Reef, Australia. Permanent plots and settlement tiles were monitored every six months for three years in each habitat. These environments exhibited profound differences: the reef slope was characterised by 95% less macroalgal cover, and twice the amount of available settlement substrata and rates of coral settlement than the reef flat. Consequently, post-settlement coral survival in the reef slope was substantially higher than that of the reef flat, and resulted in a rapid increase in coral cover from 7 to 31% in 2.5 years. In contrast, coral cover on the reef flat remained low (~10%), whereas macroalgal cover increased from 23 to 45%. A positive stock-recruitment relationship was found in brooding corals in both habitats; however, brooding corals were not directly responsible for the observed changes in coral cover. Rather, the rapid increase on the reef slope resulted from high abundances of broadcast spawning Acropora recruits. Incorporating our results into transition matrix models demonstrated that most corals escape mortality once they exceed 50 mm, but for smaller corals mortality in brooders was double those of spawners (i.e. acroporids and massive corals). For corals on the reef flat, sensitivity analysis demonstrated that growth and mortality of larger juveniles (21–50 mm) highly influenced population dynamics; whereas the recruitment, growth and mortality of smaller corals (<20 mm) had the highest influence on reef slope population dynamics. Our results provide insight into the population dynamics and recovery trajectories in disparate reef habitats, and highlight the importance of acroporid recruitment in driving rapid increases in coral cover following large-scale perturbation in reef slope environments. PMID:26009892

Linking demographic processes of juvenile corals to benthic recovery trajectories in two common reef habitats.

PubMed

Doropoulos, Christopher; Ward, Selina; Roff, George; González-Rivero, Manuel; Mumby, Peter J

2015-01-01

Tropical reefs are dynamic ecosystems that host diverse coral assemblages with different life-history strategies. Here, we quantified how juvenile (<50 mm) coral demographics influenced benthic coral structure in reef flat and reef slope habitats on the southern Great Barrier Reef, Australia. Permanent plots and settlement tiles were monitored every six months for three years in each habitat. These environments exhibited profound differences: the reef slope was characterised by 95% less macroalgal cover, and twice the amount of available settlement substrata and rates of coral settlement than the reef flat. Consequently, post-settlement coral survival in the reef slope was substantially higher than that of the reef flat, and resulted in a rapid increase in coral cover from 7 to 31% in 2.5 years. In contrast, coral cover on the reef flat remained low (~10%), whereas macroalgal cover increased from 23 to 45%. A positive stock-recruitment relationship was found in brooding corals in both habitats; however, brooding corals were not directly responsible for the observed changes in coral cover. Rather, the rapid increase on the reef slope resulted from high abundances of broadcast spawning Acropora recruits. Incorporating our results into transition matrix models demonstrated that most corals escape mortality once they exceed 50 mm, but for smaller corals mortality in brooders was double those of spawners (i.e. acroporids and massive corals). For corals on the reef flat, sensitivity analysis demonstrated that growth and mortality of larger juveniles (21-50 mm) highly influenced population dynamics; whereas the recruitment, growth and mortality of smaller corals (<20 mm) had the highest influence on reef slope population dynamics. Our results provide insight into the population dynamics and recovery trajectories in disparate reef habitats, and highlight the importance of acroporid recruitment in driving rapid increases in coral cover following large-scale perturbation in reef slope environments.

Initial colonization, erosion and accretion of coral substrate

NASA Astrophysics Data System (ADS)

Davies, Peter J.; Hutchings, Patricia A.

1983-08-01

Blocks cut from Porites lutea were laid on the fore reef slope, reef flat and a lagoonal patch reef at Lizard Island, in the Northern Great Barrier Reef, and replicates removed from each environment at intervals of three months over a period of one and a half years. Variations in bioeroders and bioaccretors were noted. Microfaunas are far more numerous than macrofaunas as block colonizers; the principal borers are polychaete worms, whereas encrusters are molluscs, bryozoans, serpulids and solitary corals. The reef slope is more readily colonised by microfauna pioneer communities than are the other areas. All the environments exhibit a change from cirratulids to either sabellids or spionids (polydorids) over the length of the experiment. Accretion occurred on all blocks during the experiment, with significant differences detectable between environments; both reef slope and reef flat blocks showed weight increases of 9 10% whereas blocks from the patch reef showed increases of 15%. Annual erosion rates produced by polychaete worms are 0.694 kg m-2 year-1 (reef front), 0.843 kg m-2 year-1 (reef flat) and 1.788 kg m-2 year-1 (patch reef).

Population Structure of Montastraea cavernosa on Shallow versus Mesophotic Reefs in Bermuda

PubMed Central

Goodbody-Gringley, Gretchen; Marchini, Chiara; Chequer, Alex D.; Goffredo, Stefano

2015-01-01

Mesophotic coral reef ecosystems remain largely unexplored with only limited information available on taxonomic composition, abundance and distribution. Yet, mesophotic reefs may serve as potential refugia for shallow-water species and thus understanding biodiversity, ecology and connectivity of deep reef communities is integral for resource management and conservation. The Caribbean coral, Montastraea cavernosa, is considered a depth generalist and is commonly found at mesophotic depths. We surveyed abundance and size-frequency of M. cavernosa populations at six shallow (10m) and six upper mesophotic (45m) sites in Bermuda and found population structure was depth dependent. The mean surface area of colonies at mesophotic sites was significantly smaller than at shallow sites, suggesting that growth rates and maximum colony surface area are limited on mesophotic reefs. Colony density was significantly higher at mesophotic sites, however, resulting in equal contributions to overall percent cover. Size-frequency distributions between shallow and mesophotic sites were also significantly different with populations at mesophotic reefs skewed towards smaller individuals. Overall, the results of this study provide valuable baseline data on population structure, which indicate that the mesophotic reefs of Bermuda support an established population of M. cavernosa. PMID:26544963

Population Structure of Montastraea cavernosa on Shallow versus Mesophotic Reefs in Bermuda.

PubMed

Goodbody-Gringley, Gretchen; Marchini, Chiara; Chequer, Alex D; Goffredo, Stefano

2015-01-01

Mesophotic coral reef ecosystems remain largely unexplored with only limited information available on taxonomic composition, abundance and distribution. Yet, mesophotic reefs may serve as potential refugia for shallow-water species and thus understanding biodiversity, ecology and connectivity of deep reef communities is integral for resource management and conservation. The Caribbean coral, Montastraea cavernosa, is considered a depth generalist and is commonly found at mesophotic depths. We surveyed abundance and size-frequency of M. cavernosa populations at six shallow (10m) and six upper mesophotic (45m) sites in Bermuda and found population structure was depth dependent. The mean surface area of colonies at mesophotic sites was significantly smaller than at shallow sites, suggesting that growth rates and maximum colony surface area are limited on mesophotic reefs. Colony density was significantly higher at mesophotic sites, however, resulting in equal contributions to overall percent cover. Size-frequency distributions between shallow and mesophotic sites were also significantly different with populations at mesophotic reefs skewed towards smaller individuals. Overall, the results of this study provide valuable baseline data on population structure, which indicate that the mesophotic reefs of Bermuda support an established population of M. cavernosa.

Net ecosystem production, calcification and CO2 fluxes on a reef flat in Northeastern Brazil

NASA Astrophysics Data System (ADS)

Longhini, Cybelle M.; Souza, Marcelo F. L.; Silva, Ananda M.

2015-12-01

The carbon cycle in coral reefs is usually dominated by the organic carbon metabolism and precipitation-dissolution of CaCO3, processes that control the CO2 partial pressure (pCO2) in seawater and the CO2 fluxes through the air-sea interface. In order to characterize these processes and the carbonate system, four sampling surveys were conducted at the reef flat of Coroa Vermelha during low tide (exposed flat). Net ecosystem production (NEP), net precipitation-dissolution of CaCO3 (G) and CO2 fluxes across the air-water interface were calculated. The reef presented net autotrophy and calcification at daytime low tide. The NEP ranged from -8.7 to 31.6 mmol C m-2 h-1 and calcification from -13.1 to 26.0 mmol C m-2 h-1. The highest calcification rates occurred in August 2007, coinciding with the greater NEP rates. The daytime CO2 fluxes varied from -9.7 to 22.6 μmol CO2 m-2 h-1, but reached up to 13,900 μmol CO2 m-2 h-1 during nighttime. Carbon dioxide influx to seawater was predominant in the reef flat during low tide. The regions adjacent to the reef showed a supersaturation of CO2, acting as a source of CO2 to the atmosphere (from -22.8 to -2.6 mol CO2 m-2 h-1) in the reef flat during ebbing tide. Nighttime gas release to the atmosphere indicates a net CO2 release from the Coroa Vermelha reef flat within 24 h, and that these fluxes can be important to carbon budget in coral reefs.

Assessing the spatial distribution of coral bleaching using small unmanned aerial systems

NASA Astrophysics Data System (ADS)

Levy, Joshua; Hunter, Cynthia; Lukacazyk, Trent; Franklin, Erik C.

2018-06-01

Small unmanned aerial systems (sUAS) are an affordable, effective complement to existing coral reef monitoring and assessment tools. sUAS provide repeatable low-altitude, high-resolution photogrammetry to address fundamental questions of spatial ecology and community dynamics for shallow coral reef ecosystems. Here, we qualitatively describe the use of sUAS to survey the spatial characteristics of coral cover and the distribution of coral bleaching across patch reefs in Kānéohe Bay, Hawaii, and address limitations and anticipated technology advancements within the field of UAS. Overlapping sub-decimeter low-altitude aerial reef imagery collected during the 2015 coral bleaching event was used to construct high-resolution reef image mosaics of coral bleaching responses on four Kānéohe Bay patch reefs, totaling 60,000 m2. Using sUAS imagery, we determined that paled, bleached and healthy corals on all four reefs were spatially clustered. Comparative analyses of data from sUAS imagery and in situ diver surveys found as much as 14% difference in coral cover values between survey methods, depending on the size of the reef and area surveyed. When comparing the abundance of unhealthy coral (paled and bleached) between sUAS and in situ diver surveys, we found differences in cover from 1 to 49%, depending on the depth of in situ surveys, the percent of reef area covered with sUAS surveys and patchiness of the bleaching response. This study demonstrates the effective use of sUAS surveys for assessing the spatial dynamics of coral bleaching at colony-scale resolutions across entire patch reefs and evaluates the complementarity of data from both sUAS and in situ diver surveys to more accurately characterize the spatial ecology of coral communities on reef flats and slopes.

Spatial distribution of marine fishes along a cross-shelf gradient containing a continuum of mangrove seagrass coral reefs off southwestern Puerto Rico

NASA Astrophysics Data System (ADS)

Aguilar-Perera, Alfonso; Appeldoorn, Richard S.

2008-01-01

Despite an extensive study of the fish community off southwestern Puerto Rico, little information is available on the fish spatial distribution along an inshore-offshore, cross-shelf gradient containing a continuum of mangrove-seagrass-coral reefs. We investigated the spatial distribution of reef-associated fish species using a stratified sampling procedure. A total of 52,138 fishes were recorded, representing 102 species belonging to 32 families. Significant differences in mean fish density were evident among strata. Mean densities at shallow fore reefs and deep fore reefs (Romero key) were significantly higher compared to the rest of strata along the gradient. Mean densities of fishes in mangroves and seagrass (Montalva Bay) were comparable to those at shallow back reefs and deep fore reefs offshore (Turrumote), but lower to those inshore (Romero); the lowest fish densities were found in mangroves and seagrass (Montalva Bay) and seagrass (Romero and Corral). At least 17 species, in 7 families, were among the most common in terms of relative abundance representing 76% of the total individuals sampled. A detrended correspondence analysis (DCA) applied to more abundant fish species showed a spatial pattern in density distribution. Three major groupings were evident corresponding to mangroves and seagrass (Montalva Bay), shallow and deep reefs (Romero), and shallow and deep reefs (Corral and Turrumote). A cluster analysis on mean fish densities of the more abundant species revealed a consistent spatial distribution according to biotope by separating the ichthyofauna associated with mangroves, seagrass and that of shallow (back and fore) reefs, and deep fore reefs.

Conventional and technical diving surveys reveal elevated biomass and differing fish community composition from shallow and upper mesophotic zones of a remote United States coral reef.

PubMed

Muñoz, Roldan C; Buckel, Christine A; Whitfield, Paula E; Viehman, Shay; Clark, Randy; Taylor, J Christopher; Degan, Brian P; Hickerson, Emma L

2017-01-01

The world's coral reefs appear to be in a global decline, yet most previous research on coral reefs has taken place at depths shallower than 30 m. Mesophotic coral ecosystem (depths deeper than ~30 m) studies have revealed extensive, productive habitats and rich communities. Despite recent advances, mesophotic coral ecosystems remain understudied due to challenges with sampling at deeper depths. The few previous studies of mesophotic coral ecosystems have shown variation across locations in depth-specific species composition and assemblage shifts, potentially a response to differences in habitat or light availability/water clarity. This study utilized scuba to examine fish and benthic communities from shallow and upper mesophotic (to 45 m) zones of Flower Garden Banks National Marine Sanctuary (FGBNMS, 28°0'N; 93°50'W) from 2010-2012. Dominant planktivores were ubiquitous in shallow and upper mesophotic habitats, and comparisons with previous shallow research suggest this community distribution has persisted for over 30 years. Planktivores were abundant in shallow low-relief habitats on the periphery of the coral reef, and some of these sites that contained habitat transitioning from high to low relief supported high biomass of benthic predators. These peripheral sites at FGBNMS may be important for the trophic transfer of oceanic energy to the benthic coral reef. Distinct differences between upper mesophotic and shallow communities were also observed. These included greater overall fish (as well as apex predator) biomass in the upper mesophotic, differences in apex predator community composition between depth zones, and greater percent cover of algae, rubble, sand, and sponges in the upper mesophotic. Greater fish biomass in the upper mesophotic and similar fish community composition between depth zones provide preliminary support that upper mesophotic habitats at FGBNMS have the capacity to serve as refugia for the shallow-water reefs. Diving surveys of the upper mesophotic and shallow-water coral reef have revealed valuable information concerning the reef fish community in the northern Gulf of Mexico, with implications for the conservation of apex predators, oceanic coral reefs, and the future management of FGBNMS.

Conventional and technical diving surveys reveal elevated biomass and differing fish community composition from shallow and upper mesophotic zones of a remote United States coral reef

PubMed Central

Buckel, Christine A.; Whitfield, Paula E.; Viehman, Shay; Clark, Randy; Taylor, J. Christopher; Degan, Brian P.; Hickerson, Emma L.

2017-01-01

The world’s coral reefs appear to be in a global decline, yet most previous research on coral reefs has taken place at depths shallower than 30 m. Mesophotic coral ecosystem (depths deeper than ~30 m) studies have revealed extensive, productive habitats and rich communities. Despite recent advances, mesophotic coral ecosystems remain understudied due to challenges with sampling at deeper depths. The few previous studies of mesophotic coral ecosystems have shown variation across locations in depth-specific species composition and assemblage shifts, potentially a response to differences in habitat or light availability/water clarity. This study utilized scuba to examine fish and benthic communities from shallow and upper mesophotic (to 45 m) zones of Flower Garden Banks National Marine Sanctuary (FGBNMS, 28°0ʹN; 93°50ʹW) from 2010–2012. Dominant planktivores were ubiquitous in shallow and upper mesophotic habitats, and comparisons with previous shallow research suggest this community distribution has persisted for over 30 years. Planktivores were abundant in shallow low-relief habitats on the periphery of the coral reef, and some of these sites that contained habitat transitioning from high to low relief supported high biomass of benthic predators. These peripheral sites at FGBNMS may be important for the trophic transfer of oceanic energy to the benthic coral reef. Distinct differences between upper mesophotic and shallow communities were also observed. These included greater overall fish (as well as apex predator) biomass in the upper mesophotic, differences in apex predator community composition between depth zones, and greater percent cover of algae, rubble, sand, and sponges in the upper mesophotic. Greater fish biomass in the upper mesophotic and similar fish community composition between depth zones provide preliminary support that upper mesophotic habitats at FGBNMS have the capacity to serve as refugia for the shallow-water reefs. Diving surveys of the upper mesophotic and shallow-water coral reef have revealed valuable information concerning the reef fish community in the northern Gulf of Mexico, with implications for the conservation of apex predators, oceanic coral reefs, and the future management of FGBNMS. PMID:29161314

Intraspecific variability in the life histories of endemic coral-reef fishes between photic and mesophotic depths across the Central Pacific Ocean

NASA Astrophysics Data System (ADS)

Winston, M. S.; Taylor, B. M.; Franklin, E. C.

2017-06-01

Mesophotic coral ecosystems (MCEs) represent the lowest depth distribution inhabited by many coral reef-associated organisms. Research on fishes associated with MCEs is sparse, leading to a critical lack of knowledge of how reef fish found at mesophotic depths may vary from their shallow reef conspecifics. We investigated intraspecific variability in body condition and growth of three Hawaiian endemics collected from shallow, photic reefs (5-33 m deep) and MCEs (40-75 m) throughout the Hawaiian Archipelago and Johnston Atoll: the detritivorous goldring surgeonfish, Ctenochaetus strigosus, and the planktivorous threespot chromis, Chromis verater, and Hawaiian dascyllus, Dascyllus albisella. Estimates of body condition and size-at-age varied between shallow and mesophotic depths; however, these demographic differences were outweighed by the magnitude of variability found across the latitudinal gradient of locations sampled within the Central Pacific. Body condition and maximum body size were lowest in samples collected from shallow and mesophotic Johnston Atoll sites, with no difference occurring between depths. Samples from the Northwestern Hawaiian Islands tended to have the highest body condition and reached the largest body sizes, with differences between shallow and mesophotic sites highly variable among species. The findings of this study support newly emerging research demonstrating intraspecific variability in the life history of coral-reef fish species whose distributions span shallow and mesophotic reefs. This suggests not only that the conservation and fisheries management should take into consideration differences in the life histories of reef-fish populations across spatial scales, but also that information derived from studies of shallow fishes be applied with caution to conspecific populations in mesophotic coral environments.

Demise of reef-flat carbonate accumulation with late Holocene sea-level fall: Evidence from Molokai, Hawaii

USGS Publications Warehouse

Engels, M.S.; Fletcher, C.H.; Field, M.; Conger, C.L.; Bochicchio, C.

2008-01-01

Twelve cores from the protected reef-flat of Molokai revealed that carbonate sediment accumulation, ranging from 3 mm year-1 to less than 1 mm year-1, ended on average 2,500 years ago. Modern sediment is present as a mobile surface veneer but is not trapped within the reef framework. This finding is consistent with the arrest of deposition at the end of the mid-Holocene highstand, known locally as the "Kapapa Stand of the Sea," ???2 m above the present datum ca. 3,500 years ago in the main Hawaiian Islands. Subsequent erosion, non-deposition, and/or a lack of rigid binding were probable factors leading to the lack of reef-flat accumulation during the late Holocene sea-level fall. Given anticipated climate changes, increased sedimentation of reef-flat environments is to be expected as a consequence of higher sea level. ?? 2008 Springer-Verlag.

Novel reef fabrics from the Devonian Canning Basin, Western Australia

NASA Astrophysics Data System (ADS)

Wood, Rachel

1998-11-01

Large cement-filled cavities (0.2 to 1.5 m wide) are well developed in slope-margin sediments of the spectacular Upper Devonian (Frasnian) reefs of the Canning Basin, Western Australia, where they account for up to 50% of the primary porosity. These are here interpreted as primary reef framework cavities that formed beneath a variety of domal, tabular or laminar stromatoporoid sponges. Of particular note are those created by unusual, very thin (2 to 8 mm), laminar stromatoporoids (mainly Stachyodes australe), that formed arching, hollow domes up to 0.3 m in height and 1.5 m in diameter over the sediment surface to enclose flat-based cavities. The free undersurface of these stromatoporoids often supported a hitherto unrecognised cryptic community, dominated by pendent growth of the putative calcified cyanobacterium Renalcis, with rare intergrown lithistid sponges and spiny atrypid brachiopods. The uneven growth surface of the cryptos imparts an irregular, stromatactis-like texture to the upper surface of the remaining cavity, which is filled by early marine, finely banded, fibrous cements (mainly radiaxial calcite) interbedded with often multiple generations of geopetal sediment containing peloids and ostracod debris. This ecology yields the tabular stromatoporoid- Renalcis fabric described ubiquitously from the Canning Basin reef complex. Such unusual reef fabrics are a consequence of the ecology of shallow marine mid-Palaeozoic reefs which were quite unlike that of modern coral reefs. The frequent preservation of relatively delicate, in situ communities was due to (1) rapid and pervasive early cementation, (2) growth under non-energetic conditions, and (3) the relative insignificance of bioeroders associated with reefs at this time.

Coastal Erosion in a Coral Reef Island, Taiping Island, South China Sea

NASA Astrophysics Data System (ADS)

Su, S.; Ma, G.; Liang, M.; Chu, J.

2011-12-01

Reef flats surrounding islands are known to dissipate much offshore wave energy, and thereby protect beaches from erosion. Taiping Island, the largest coral reef islands of the Spratly Islands in the South China Sea, has been observed the shorelines erosion on the southwest coast over past decades. It is recognized that wave and current processes across coral reefs affect reef-island development and morphology. A number of studies suggest effects of climate changes, sea-level rise and storm-intensity increase, determine the magnitude of wave energy on the reef platform and will likely intensify the erosion. The topographical change in the local region, the southwest reef flat was dredged a channel for navigation, may be a significant factor in influencing current characteristics. Numerical modeling is used to describe both hydrodynamics and sediment dynamics because there are no field measurements available around the reef flat. Field observations off the island conducted in August 2004 and November 2005 provides offshore wave characteristics of the predominant wind seasons. Numerical simulations perform the spatial and temporal variation of waves and current patterns and coastal erosion potential on the reef platform.

Quaternary onset and evolution of Kimberley coral reefs (Northwest Australia) revealed by high-resolution seismic imaging

NASA Astrophysics Data System (ADS)

Bufarale, Giada; Collins, Lindsay B.; O'Leary, Michael J.; Stevens, Alexandra; Kordi, Moataz; Solihuddin, Tubagus

2016-07-01

The inner shelf Kimberley Bioregion of Northwest Australia is characterised by a macrotidal setting where prolific coral reefs growth as developed around a complex drowned landscape and is considered a biodiversity "hotspot". High-resolution shallow seismic studies were conducted across various reef settings in the Kimberley (Buccaneer Archipelago, north of Dampier Peninsula, latitude: between 16°40‧S and 16°00‧S) to evaluate stratigraphic evolution, interaction with different substrates, morphological patterns and distribution. Reef sites were chosen to assess most of the reef types present, particularly high intertidal planar reefs and fringing reefs. Reef internal acoustic reflectors were identified according to their shape, stratigraphic position and characteristics. Two main seismic horizons were identified marking the boundaries between Holocene reef (Marine Isotope Stage 1, MIS 1, last 12 ky), commonly 10-20 m thick, and MIS 5 (Last Interglacial, LIG, ~120 ky, up to 12 m thick) and Proterozoic rock foundation over which Quaternary reef growth occurred. Within the Holocene Reef unit, at least three minor internal reflectors, generally discontinuous, subparallel to the reef flat were recognised and interpreted as either growth hiatuses or a change of the coral framework or sediment matrix. The LIG reefs represent a new northernmost occurrence along the Western Australian coast. The research presented here achieved the first regional geophysical study of the Kimberley reefs. Subbottom profiles demonstrated that the surveyed reefs are characterised by a multi-stage reef buildup, indicating that coral growth occurred in the Kimberley during previous sea level highstands. The data show also that antecedent substrate and regional subsidence have contributed, too, in determining the amount of accommodation available for reef growth and controlling the morphology of the successive reef building stages. Moreover, the study showed that in spite of macrotidal conditions, high-turbidity and frequent high-energy cyclonic events, corals have exhibited prolific reef growth during the Holocene developing significant reef accretionary structures. As a result coral reefs have generating habitat complexity and species diversity in what is a biodiversity hotspot.

Dissolved inorganic carbon and total alkalinity of a Hawaiian fringing reef: chemical techniques for monitoring the effects of ocean acidification on coral reefs

NASA Astrophysics Data System (ADS)

Lantz, C. A.; Atkinson, M. J.; Winn, C. W.; Kahng, S. E.

2014-03-01

There is an interest in developing approaches to "ecosystem-based" management for coral reefs. One aspect of ecosystem performance is to monitor carbon metabolism of whole communities. In an effort to explore robust techniques to monitor the metabolism of fringing reefs, especially considering the possible effects of ocean acidification, a yearlong study of the carbonate chemistry of a nearshore fringing reef in Hawaii was conducted. Diurnal changes in seawater carbonate chemistry were measured once a week in an algal-dominated and a coral-dominated reef flat on the Waimanalo fringing reef, Hawaii, from April of 2010 until May of 2011. Calculated rates of gross primary production (GPP) and net community calcification ( G) were similar to previous estimates of community metabolism for other coral reefs (GPP 971 mmol C m-2 d-1; G 186 mmol CaCO3 m-2 d-1) and indicated that this reef was balanced in terms of organic metabolism, exhibited net calcification, and was a net source of CO2 to the atmosphere. Average slopes of total alkalinity versus dissolved inorganic carbon (TA-DIC slope) for the coral-dominated reef flat exhibited a greater calcification-to-net photosynthesis ratio than for the algal-dominated reef flat (coral slope vs. algal slope). Over the course of the time series, TA-DIC slopes remained significantly different between sites and were not correlated with diurnal averages in reef-water residence time or solar irradiance. These characteristic slopes for each reef flat reflect the relationship between carbon and carbonate community metabolism and can be used as a tool to monitor ecosystem function in response to ocean acidification.

Characterization of sediment trapped by macroalgae on a Hawaiian reef flat

USGS Publications Warehouse

Stamski, R.E.; Field, M.E.

2006-01-01

Reef researchers studying community shifts in the balance between corals and fleshy macroalgae have noted that algae are often covered with sediment. This study characterizes sediment trapping by macroalgae within a Hawaiian reef habitat and constrains the controls on this process. Sediment-laden macroalgae were sampled and macroalgal cover was assessed on a wide (???1 km) reef flat off south-central Molokai. Macroalgae trapped a mean of 1.26 (??0.91 SD) grams of sediment per gram of dry weight biomass and that sediment was dominantly terrigenous mud (59% by weight). It was determined that biomass, as a proxy for algal size, and morphology were not strict controls on the sediment trapping process. Over 300 metric tons of sediment were estimated to be retained by macroalgae across 5.75 km2 of reef flat (54 g m-2), suggesting that this process is an important component of sediment budgets. In addition, understanding the character of sediment trapped by macroalgae may help constrain suspended sediment flux and has implications for nutrient dynamics in reef flat environments. ?? 2005 Elsevier Ltd. All rights reserved.

Characterization of sediment trapped by macroalgae on a Hawaiian reef flat

NASA Astrophysics Data System (ADS)

Stamski, Rebecca E.; Field, Michael E.

2006-01-01

Reef researchers studying community shifts in the balance between corals and fleshy macroalgae have noted that algae are often covered with sediment. This study characterizes sediment trapping by macroalgae within a Hawaiian reef habitat and constrains the controls on this process. Sediment-laden macroalgae were sampled and macroalgal cover was assessed on a wide (˜1 km) reef flat off south-central Molokai. Macroalgae trapped a mean of 1.26 (±0.91 SD) grams of sediment per gram of dry weight biomass and that sediment was dominantly terrigenous mud (59% by weight). It was determined that biomass, as a proxy for algal size, and morphology were not strict controls on the sediment trapping process. Over 300 metric tons of sediment were estimated to be retained by macroalgae across 5.75 km 2 of reef flat (54 g m -2), suggesting that this process is an important component of sediment budgets. In addition, understanding the character of sediment trapped by macroalgae may help constrain suspended sediment flux and has implications for nutrient dynamics in reef flat environments.

Deep reefs are not universal refuges: Reseeding potential varies among coral species

PubMed Central

Bongaerts, Pim; Riginos, Cynthia; Brunner, Ramona; Englebert, Norbert; Smith, Struan R.; Hoegh-Guldberg, Ove

2017-01-01

Deep coral reefs (that is, mesophotic coral ecosystems) can act as refuges against major disturbances affecting shallow reefs. It has been proposed that, through the provision of coral propagules, such deep refuges may aid in shallow reef recovery; however, this “reseeding” hypothesis remains largely untested. We conducted a genome-wide assessment of two scleractinian coral species with contrasting reproductive modes, to assess the potential for connectivity between mesophotic (40 m) and shallow (12 m) depths on an isolated reef system in the Western Atlantic (Bermuda). To overcome the pervasive issue of endosymbiont contamination associated with de novo sequencing of corals, we used a novel subtraction reference approach. We have demonstrated that strong depth-associated selection has led to genome-wide divergence in the brooding species Agaricia fragilis (with divergence by depth exceeding divergence by location). Despite introgression from shallow into deep populations, a lack of first-generation migrants indicates that effective connectivity over ecological time scales is extremely limited for this species and thus precludes reseeding of shallow reefs from deep refuges. In contrast, no genetic structuring between depths (or locations) was observed for the broadcasting species Stephanocoenia intersepta, indicating substantial potential for vertical connectivity. Our findings demonstrate that vertical connectivity within the same reef system can differ greatly between species and that the reseeding potential of deep reefs in Bermuda may apply to only a small number of scleractinian species. Overall, we argue that the “deep reef refuge hypothesis” holds for individual coral species during episodic disturbances but should not be assumed as a broader ecosystem-wide phenomenon. PMID:28246645

Mesophotic bioerosion: Variability and structural impact on U.S. Virgin Island deep reefs

NASA Astrophysics Data System (ADS)

Weinstein, David K.; Smith, Tyler B.; Klaus, James S.

2014-10-01

Mesophotic reef corals, found 30-150 m below sea level, build complex structures that provide habitats for diverse ecosystems. Whereas bioerosion is known to impact the development and persistence of shallow reef structures, little is known regarding the extent of mesophotic bioerosion or how it might affect deeper reef geomorphology and carbonate accretion. Originally pristine experimental coral substrates and collected coral rubble were both used to investigate the variation and significance of mesophotic coral reef bioerosion south of St. Thomas, U.S. Virgin Islands. Bioerosion rates were calculated from experimental coral substrates exposed as framework for 1 and 2 years at four structurally distinct mesophotic coral reef habitats (between 30 and 45 m) as well as at a mid-shelf patch reef (21 m) and a shallow fringing patch reef (9 m). The long-term effects of macroboring were assessed by examining coral rubble collected at all sites. Overall, differences in bioerosional processes were found between shallow and mesophotic reefs. Increases in bioerosion on experimental substrates (amount of weight lost) were related to both decreasing seawater depth and increasing biomass of bioeroding parrotfish. Significant differences in coral skeleton bioerosion rates were also found between the transitional mesophotic reef zone (30-35 m) and the upper mesophotic reef zone (35-50 m) after 2 years of exposure, ranging from - 19.6 to 3.7 g/year. Total coral rubble macroboring was greater at most deep sites compared to shallower sites. Bioerosional grazing was found to dominate initial substrate modification in reefs 30.7 m and shallower, but sponges are believed to act as the main time-averaged long-term substrate bioeroders in reefs between 35 and 50 m. Although initial substrate bioerosion rates of a uniform substrate were relatively homogeneous in the 35-50 m depth zone, comparison of site composition suggests that mesophotic bioerosion will vary depending on the amount, location, and type of available substrate, and the duration both coral rubble and in situ coral framework are exposed on the seafloor. These variations may exaggerate pronounced structural differences in mesophotic reef habitats that experience few other methods of erosion.

Wave setup over a Pacific Island fringing reef

NASA Astrophysics Data System (ADS)

Vetter, O.; Becker, J. M.; Merrifield, M. A.; Pequignet, A.-C.; Aucan, J.; Boc, S. J.; Pollock, C. E.

2010-12-01

Measurements obtained across a shore-attached, fringing reef on the southeast coast of the island of Guam are examined to determine the relationship between incident waves and wave-driven setup during storm and nonstorm conditions. Wave setup on the reef flat correlates well (r > 0.95) and scales near the shore as approximately 35% of the incident root mean square wave height in 8 m water depth. Waves generated by tropical storm Man-Yi result in a 1.3 m setup during the peak of the storm. Predictions based on traditional setup theory (steady state, inviscid cross-shore momentum and depth-limited wave breaking) and an idealized model of localized wave breaking at the fore reef are in agreement with the observations. The reef flat setup is used to estimate a similarity parameter at breaking that is in agreement with observations from a steeply sloping sandy beach. A weak (˜10%) increase in setup is observed across the reef flat during wave events. The inclusion of bottom stress in the cross-shore momentum balance may account for a portion of this signal, but this assessment is inconclusive as the reef flat currents in some cases are in the wrong direction to account for the increase. An independent check of fringing reef setup dynamics is carried out for measurements at the neighboring island of Saipan with good agreement.

Reef Development on Artificial Patch Reefs in Shallow Water of Panjang Island, Central Java

NASA Astrophysics Data System (ADS)

Munasik; Sugiyanto; Sugianto, Denny N.; Sabdono, Agus

2018-02-01

Reef restoration methods are generally developed by propagation of coral fragments, coral recruits and provide substrate for coral attachment using artificial reefs (ARs). ARs have been widely applied as a tool for reef restoration in degraded natural reefs. Successful of coral restoration is determined by reef development such as increasing coral biomass, natural of coral recruits and fauna associated. Artificial Patch Reefs (APRs) is designed by combined of artificial reefs and coral transplantation and constructed by modular circular structures in shape, were deployed from small boats by scuba divers, and are suitable near natural reefs for shallow water with low visibility of Panjang Island, Central Java. Branching corals of Acropora aspera, Montipora digitata and Porites cylindrica fragments were transplanted on to each module of two units of artificial patch reefs in different periods. Coral fragments of Acropora evolved high survival and high growth, Porites fragments have moderate survival and low growth, while fragment of Montipora show in low survival and moderate growth. Within 19 to 22 months of APRs deployment, scleractinian corals were recruited on the surface of artificial patch reef substrates. The most recruits abundant was Montastrea, followed by Poritids, Pocilloporids, and Acroporids. We conclude that artificial patch reefs with developed by coral fragments and natural coral recruitment is one of an alternative rehabilitation method in shallow reef with low visibility.

Quantitative morphology of a fringing reef tract from high-resolution laser bathymetry: Southern Molokai, Hawaii

USGS Publications Warehouse

Storlazzi, C.D.; Logan, J.B.; Field, M.E.

2003-01-01

High-resolution Scanning Hydrographic Operational Airborne Lidar Survey (SHOALS) laser-determined bathymetric data were used to define the morphology of spur-and-groove structures on the fringing reef off the south coast of Molokai, Hawaii. These data provide a basis for mapping and analyzing morphology of the reef with a level of precision and spatial coverage never before attained. An extensive fringing coral reef stretches along the central two-thirds of Molokai's south shore (???40 km); along the east and west ends there is only a thin veneer of living coral with no developed reef complex. In total, ???4800 measurements of spur-and-groove height and the distance between adjacent spur crests (wavelength) were obtained along four isobaths. Between the 5m and 15m isobaths, the mean spur height increased from 0.7 m to 1.6 m, whereas the mean wavelength increased from 71 m to 104 m. Reef flat width was found to exponentially decrease with increasing wave energy. Overall, mean spur-and-groove height and wavelength were shown to be inversely proportional to wave energy. In high-energy environments, spur-and-groove morphology remains relatively constant across all water depths. In low-energy environments, however, spur-and-groove structures display much greater variation; they are relatively small and narrow in shallow depths and develop into much larger and broader features in deeper water. Therefore, it appears that waves exert a primary control on both the small and large-scale morphology of the reef off south Molokai.

Assessing the Diversity of Halimeda spp. on Pulley Ridge Mesophotic Reefs

NASA Astrophysics Data System (ADS)

Luzader, R. K.; Baco-Taylor, A.

2016-02-01

The Florida reef system contains an array of organisms that contribute to the development of the reef structure. These include calcifying green macroalgae of the genus Halimeda, which provides important ecosystem services by stabilizing the reefs through calcification. Halimeda is one of several groups of shallow water reef taxa with a depth range that extends into the mesophotic zone. It has been hypothesized the mesophotic reefs may serve as refugia for shallow water taxa impacted by climate change and other anthropogenic stressors. To test this hypothesis, in 2012-2015, the mesophotic reefs of Pulley Ridge and Dry Tortugas were sampled to assess genetic connectivity to the shallow water reefs of the Florida Keys. A diverse array of Halimeda species were represented on Pulley Ridge. Halimeda species are known to be difficult to identify and delineate morphologically and the taxonomy of Halimeda species has been revised several times based on molecular data. Thus, before connectivity of mesophotic Halimeda to shallow populations can be assessed, our first goal is to determine whether there is overlap of any of the Halimeda species between the mesophotic and shallow reefs, and then to determine if any of the species are present in sufficient abundance for population genetics. We sequenced portions of two chloroplast genes commonly used for algal phylogenetics and barcoding, tufA and rbcL, for at least 5 individuals of each morphotype collected on Dry Tortugas and the Pulley Ridge mesophotic reefs. Preliminary results suggest that Halimeda tuna, the species previously reported as the dominant Halimeda species on Pulley Ridge, was relatively uncommon. Morphological results and comparison of initial genetic results to sequences in GenBank suggest that H. goreaui is abundant at the Dry Tortugas site and H. fragilis, H. copiosa and H. discoidea are common on Pulley Ridge, indicating greater Halimeda diversity in the mesophotic reef system than previously documented.

Importance of Mangroves, Seagrass Beds and the Shallow Coral Reef as a Nursery for Important Coral Reef Fishes, Using a Visual Census Technique

NASA Astrophysics Data System (ADS)

Nagelkerken, I.; van der Velde, G.; Gorissen, M. W.; Meijer, G. J.; Van't Hof, T.; den Hartog, C.

2000-07-01

The nursery function of various biotopes for coral reef fishes was investigated on Bonaire, Netherlands Antilles. Length and abundance of 16 commercially important reef fish species were determined by means of visual censuses during the day in six different biotopes: mangrove prop-roots ( Rhizophora mangle) and seagrass beds ( Thalassia testudinum) in Lac Bay, and four depth zones on the coral reef (0 to 3 m, 3 to 5 m, 10 to 15 m and 15 to 20 m). The mangroves, seagrass beds and shallow coral reef (0 to 3 m) appeared to be the main nursery biotopes for the juveniles of the selected species. Mutual comparison between biotopes showed that the seagrass beds were the most important nursery biotope for juvenile Haemulon flavolineatum, H. sciurus, Ocyurus chrysurus, Acanthurus chirurgus and Sparisoma viride, the mangroves for juvenile Lutjanus apodus, L. griseus, Sphyraena barracuda and Chaetodon capistratus, and the shallow coral reef for juvenile H. chrysargyreum, L. mahogoni , A. bahianus and Abudefduf saxatilis. Juvenile Acanthurus coeruleus utilized all six biotopes, while juvenile H. carbonarium and Anisotremus surinamensis were not observed in any of the six biotopes. Although fishes showed a clear preference for a specific nursery biotope, most fish species utilized multiple nursery biotopes simultaneously. The almost complete absence of juveniles on the deeper reef zones indicates the high dependence of juveniles on the shallow water biotopes as a nursery. For most fish species an (partial) ontogenetic shift was observed at a particular life stage from their (shallow) nursery biotopes to the (deeper) coral reef. Cluster analyses showed that closely related species within the families Haemulidae, Lutjanidae and Acanthuridae, and the different size classes within species in most cases had a spatial separation in biotope utilization.

Adaptation to reef habitats through selection on the coral animal and its associated microbiome.

PubMed

van Oppen, Madeleine J H; Bongaerts, Pim; Frade, Pedro; Peplow, Lesa M; Boyd, Sarah E; Nim, Hieu T; Bay, Line K

2018-06-13

Spatially adjacent habitats on coral reefs can represent highly distinct environments, often harbouring different coral communities. Yet, certain coral species thrive across divergent environments. It is unknown whether the forces of selection are sufficiently strong to overcome the counteracting effects of the typically high gene flow over short distances, and for local adaptation to occur. We screened the coral genome (using restriction-site-associated sequencing [RAD-seq]), and characterized both the dinoflagellate photosymbiont and tissue-associated prokaryote microbiomes (using metabarcoding) of a reef flat and slope population of the reef-building coral, Pocillopora damicornis, at two locations on Heron Island in the southern Great Barrier Reef. Reef flat and slope populations were separated by <100 m horizontally and ~5 m vertically and the two study locations were separated by ~1 km. For the coral host, genetic divergence between habitats was much greater than between locations, suggesting limited gene flow between the flat and slope populations. Consistent with environmental selection, outlier loci primarily belonged to the conserved, minimal cellular stress response, likely reflecting adaptation to the different temperature and irradiance regimes on the reef flat and slope. Similarly, the prokaryote community differed across both habitat and, to a lesser extent, location, whereas the dinoflagellate photosymbionts differed by habitat but not location. The observed intra-specific diversity associated with divergent habitats supports that environmental adaptation involves multiple members of the coral holobiont. Adaptive alleles or microbial associations present in coral populations from the environmentally-variable reef flat may provide a source of adaptive variation for assisted evolution approaches, through assisted gene flow, artificial cross-breeding or probiotic inoculations, with the aim to increase climate resilience in the slope populations. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Coral communities of the remote atoll reefs in the Nansha Islands, southern South China Sea.

PubMed

Zhao, M X; Yu, K F; Shi, Q; Chen, T R; Zhang, H L; Chen, T G

2013-09-01

During the months of May and June in the year 2007, a survey was conducted regarding coral reef communities in the remote atolls (Zhubi Reef and Meiji Reef) of Nansha Islands, southern South China Sea. The goals of the survey were to: (1) for the first time, compile a scleractinian coral check-list; (2) estimate the total richness, coral cover, and growth forms of the community; and (3) describe preliminary patterns of community structure according to geomorphological units. Findings of this survey revealed a total of 120 species of scleractinia belonging to 40 genera, while the average coral cover was 21 %, ranging from less than 10 % to higher than 50 %. Branching and massive corals were also found to be the most important growth forms of the whole coral community, while Acropora, Montipora, and Porites were the three dominant genera in the overall region, with their contributions to total coral cover measuring 21, 22, and 23 %, respectively. Overall, coral communities of the Nansha Islands were in a relative healthy condition with high species diversity and coral cover. Spatial pattern of coral communities existed among various geomorphological units. Mean coral cover was highest in the patch reef within the lagoon, followed by the fore reef slope, reef flat, and lagoon slope. The greatest contributors to total coral cover were branching Acropora (45 %) in the lagoon slope, branching Montipora (44 %) in the reef flat, and massive Porites (51 %) in the patch reef. Coral cover in the fore reef revealed a greater range of genera than in other habitats. The leeward fore reef slope had higher coral cover (> 50 %) when compared with the windward slope (< 10 %). The coral communities of the inner reef flat were characterized by higher coral cover (27 %) and dominant branching Montipora corals, while lower coral cover (4 %) was dominated by Psammocora with massive growth forms on the outer reef flat. Destructive fishing and coral bleaching were two major threats to coral communities in the study area.

Sewage pollution in Negril, Jamaica: effects on nutrition and ecology of coral reef macroalgae

NASA Astrophysics Data System (ADS)

Lapointe, B. E.; Thacker, K.; Hanson, C.; Getten, L.

2011-07-01

Coral reefs in the Negril Marine Park (NMP), Jamaica, have been increasingly impacted by nutrient pollution and macroalgal blooms following decades of intensive development as a major tourist destination. A baseline survey of DIN and SRP concentrations, C:N:P and stable nitrogen isotope ratios (δ15N) of abundant reef macroalgae on shallow and deep reefs of the NMP in 1998 showed strong P-limitation and evidence of increasing sewage pollution. In 1999, a sewage collection and treatment project began diverting wastewater from the resort and urban areas to a pond system that discharged partially-treated effluent into the South Negril River (SNR). These sewage discharges significantly increased concentrations of NH{4/+} and SRP (N:P ˜13) in the SNR, which flows into Long Bay and around Negril's "West End". Concentrations of SRP, the primary limiting nutrient, were higher on shallow reefs of the West End in 2001 compared to 1998. Stable nitrogen isotope ratios (δ15N) of abundant reef macroalgae on both shallow and deep reefs of the West End in 2002 were significantly higher than baseline values in 1998, indicating an escalating impact of sewage nitrogen pollution over this timeframe. The increased nutrient concentrations and δ15N enrichment of reef macroalgae correlated with blooms of the chlorophyte Chaetomorpha linum in shallow waters of Long Bay and Codium isthmocladum and Caulerpa cupressoides on deep reefs of the West End. Sewage treatment systems adjacent to coral reefs must include nutrient removal to ensure that DIN and SRP concentrations, after dilution, are below the low thresholds noted for these oligotrophic ecosystems.

Upper Miocene reef complex of Mallorca, Balearic Islands, Spain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pomar, L.

1988-02-01

The late Tortonian-Messinian coral reef platform of south Mallorca onlaps a folded middle late Miocene carbonate platform on which progradation of up to 20 km occurs. Vertical sea cliffs (up to 100 m high) superbly show the last 5 km of this progradation and complement the numerous water-well cores from the island interior. The Mallorca reef presents the most complete facies zonation of the Miocene reefs of the western Mediterranean. The reef wall framework is up to 20 m thick and shows (1) erosional reef flat with reef breccia and small corals; (2) spur-and-grove zone with large, massive corals; (3)more » deep buttresses and pinnacles with terraces of branching corals; and (4) deep reef wall with flat, laminar coral colonies, branching red algae, and Halimeda sands.« less

Mesophotic depths as refuge areas for fishery-targeted species on coral reefs

NASA Astrophysics Data System (ADS)

Lindfield, Steven J.; Harvey, Euan S.; Halford, Andrew R.; McIlwain, Jennifer L.

2016-03-01

Coral reefs are subjected to unprecedented levels of disturbance with population growth and climate change combining to reduce standing coral cover and stocks of reef fishes. Most of the damage is concentrated in shallow waters (<30 m deep) where humans can comfortably operate and where physical disturbances are most disruptive to marine organisms. Yet coral reefs can extend to depths exceeding 100 m, potentially offering refuge from the threats facing shallower reefs. We deployed baited remote underwater stereo-video systems (stereo-BRUVs) at depths of 10-90 m around the southern Mariana Islands to investigate whether fish species targeted by fishing in the shallows may be accruing benefits from being at depth. We show that biomass, abundance and species richness of fishery-targeted species increased from shallow reef areas to a depth of 60 m, whereas at greater depths, a lack of live coral habitat corresponded to lower numbers of fish. The majority of targeted species were found to have distributions that ranged from shallow depths (10 m) to depths of at least 70 m, emphasising that habitat, not depth, is the limiting factor in their vertical distribution. While the gradient of abundance and biomass versus depth was steepest for predatory species, the first species usually targeted by fishing, we also found that fishery-targeted herbivores prevailed in similar biomass and species richness to 60 m. Compared to shallow marine protected areas, there was clearly greater biomass of fishery-targeted species accrued in mesophotic depths. Particularly some species typically harvested by depth-limited fishing methods (e.g., spearfishing), such as the endangered humphead wrasse Cheilinus undulatus, were found in greater abundance on deeper reefs. We conclude that mesophotic depths provide essential fish habitat and refuge for fishery-targeted species, representing crucial zones for fishery management and research into the resilience of disturbed coral reef ecosystems.

Anatomy of a cyclically packaged Mesoproterozoic carbonate ramp in northern Canada

NASA Astrophysics Data System (ADS)

Sherman, A. G.; Narbonne, G. M.; James, N. P.

2001-03-01

Carbonates in the upper member of the Mesoproterozoic Victor Bay Formation are dominated by lime mud and packaged in cycles of 20-50 m. These thicknesses exceed those of classic shallowing-upward cycles by almost a factor of 10. Stratigraphic and sedimentological evidence suggests high-amplitude, high-frequency glacio-eustatic cyclicity, and thus a cool global climate ca. 1.2 Ga. The Victor Bay ramp is one of several late Proterozoic carbonate platforms where the proportions of lime mud, carbonate grains, and microbialites are more typical of younger Phanerozoic successions which followed the global waning of stromatolites. Facies distribution in the study area is compatible with deposition on a low-energy, microtidal, distally steepened ramp. Outer-ramp facies are hemipelagic lime mudstone, shale, carbonaceous rhythmite, and debrites. Mid-ramp facies are molar-tooth limestone tempestite with microspar-intraclast lags. In a marine environment where stromatolitic and oolitic facies were otherwise rare, large stromatolitic reefs developed at the mid-ramp, coeval with inner-ramp facies of microspar grainstone, intertidal dolomitic microbial laminite, and supratidal evaporitic red shale. Deep-subtidal, outer-ramp cycles occur in the southwestern part of the study area. Black dolomitic shale at the base is overlain by ribbon, nodular, and carbonaceous carbonate facies, all of which exhibit signs of synsedimentary disruption. Cycles in the northeast are shallow-subtidal and peritidal in character. Shallow-subtidal cycles consist of basal deep-water facies, and an upper layer of subtidal molar-tooth limestone tempestite interbedded with microspar calcarenite facies. Peritidal cycles are identical to shallow-subtidal cycles except that they contain a cap of dolomitic tidal-flat microbial laminite, and rarely of red shale sabkha facies or of sandy polymictic conglomerate. A transect along the wall of a valley extending 8.5 km perpendicular to depositional strike reveals progradation of inner-ramp tidal flats over outer- and mid-ramp facies during shoaling. The maximum basinward progradation of peritidal facies coincides with a zone of slope failure that may have promoted the development of the stromatolitic reefs. The sea-level history of the Victor Bay Formation is represented by three hectometre-scale sequences. An initial flooding event resulted in deposition of the lower Victor Bay shale member. Upper-member carbonate cycles were then deposited during highstand. Mid-ramp slumping was followed by late-highstand reef development. The second sequence began with development of an inner-ramp lowstand unconformity and a thick mid-ramp lowstand wedge. A second transgression promoted a more modest phase of reef development at the mid-ramp and shallow-water deposition continued inboard. A third and final transgressive episode eventually led to flooding of the backstepping ramp. Overall consistent cycle thickness and absence of truncated cycles, as well as the high rate and amount of creation of accommodation space, suggest that the periodicity and amplitude of sea-level fluctuation were relatively uniform, and point to a eustatic rather than tectonic mechanism of relative sea-level change. High-amplitude, high-frequency eustatic sea-level change is characteristic of icehouse worlds in which short-term, large-scale sea-level fluctuations accompany rapidly changing ice volumes affected by Milankovitch orbital forcing. Packaging of cyclic Upper Victor Bay carbonates therefore supports the hypothesis of a late Mesoproterozoic glacial period, as proposed by previous workers.

New evidence for the barrier reef model, Permian Capitan Reef complex, New Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirkland, B.L.; Moore, C.H. Jr.

1990-05-01

Recent paleontologic and petrologic observations suggest that the Capitan Formation was deposited as an organic or ecologic reef that acted as an emergent barrier to incoming wave energy. In outcrops in the Guadalupe Mountains and within Carlsbad Caverns, massive reef boundstone contains a highly diverse assemblage of frame-building and binding organisms. In modern reefs, diversity among frame builders decreases dramatically with depth. Marine cement is abundant in reef boundstone, but limited in back-reef grainstone and packstone. This cementation pattern is similar to that observed in modern emergent barrier reef systems. Based on comparison with modern analogs, these dasycladrominated back-reef sedimentsmore » and their associated biota are indicative of shallow, hypersaline conditions. Few of these dasyclads exhibit broken or abraded segments and some thallus sections are still articulated suggesting that low-energy, hypersaline conditions occurred immediately shelfward of the reef. In addition, large-scale topographic features, such as possible spur and groove structures between Walnut Canyon and Rattlesnake Canyon, and facies geometries, such as the reef to shelf transition, resemble those found in modern shallow-water reefs. The organisms that formed the Capitan Reef appear to have lived in, and responded to, physical and chemical conditions similar to those that control the geometry of modern shallow-water reefs. Like their modern counterparts, they seem to have strongly influenced adjacent environments. In light of this evidence, consideration should be given to either modifying or abandoning the marginal mound model in favor of the originally proposed barrier reef model.« less

Long-lived groupers require structurally stable reefs in the face of repeated climate change disturbances

NASA Astrophysics Data System (ADS)

Karkarey, R.; Kelkar, N.; Lobo, A. Savio; Alcoverro, T.; Arthur, R.

2014-06-01

Benthic recovery from climate-related disturbances does not always warrant a commensurate functional recovery for reef-associated fish communities. Here, we examine the distribution of benthic groupers (family Serranidae) in coral reef communities from the Lakshadweep archipelago (Arabian Sea) in response to structural complexity and long-term habitat stability. These coral reefs that have been subject to two major El Niño Southern Oscillation-related coral bleaching events in the last decades (1998 and 2010). First, we employ a long-term (12-yr) benthic-monitoring dataset to track habitat structural stability at twelve reef sites in the archipelago. Structural stability of reefs was strongly driven by exposure to monsoon storms and depth, which made deeper and more sheltered reefs on the eastern aspect more stable than the more exposed (western) and shallower reefs. We surveyed groupers (species richness, abundance, biomass) in 60 sites across the entire archipelago, representing both exposures and depths. Sites were selected along a gradient of structural complexity from very low to high. Grouper biomass appeared to vary with habitat stability with significant differences between depth and exposure; sheltered deep reefs had a higher grouper biomass than either sheltered shallow or exposed (deep and shallow) reefs. Species richness and abundance showed similar (though not significant) trends. More interestingly, average grouper biomass increased exponentially with structural complexity, but only at the sheltered deep (high stability) sites, despite the availability of recovered structure at exposed deep and shallow sites (lower-stability sites). This trend was especially pronounced for long-lived groupers (life span >10 yrs). These results suggest that long-lived groupers may prefer temporally stable reefs, independent of the local availability of habitat structure. In reefs subject to repeated disturbances, the presence of structurally stable reefs may be critical as refuges for functionally important, long-lived species like groupers.

Near-surface enrichment of zooplankton over a shallow back reef: implications for coral reef food webs

NASA Astrophysics Data System (ADS)

Alldredge, A. L.; King, J. M.

2009-12-01

Zooplankton were 3-8 times more abundant during the day near the surface than elsewhere in the water column over a 1-2.4 m deep back reef in Moorea, French Polynesia. Zooplankton were also significantly more abundant near the surface at night although gradients were most pronounced under moonlight. Zooplankton in a unidirectional current became concentrated near the surface within 2 m of departing a well-mixed trough immediately behind the reef crest, indicating that upward swimming behavior, rather than near-bottom depletion by reef planktivores, was the proximal cause of these gradients. Zooplankton were highly enriched near the surface before and after a full lunar eclipse but distributed evenly throughout the water column during the eclipse itself supporting light as a proximal cue for the upward swimming behavior of many taxa. This is the first investigation of the vertical distribution of zooplankton over a shallow back reef typical of island barrier reef systems common around the world. Previous studies on deeper fringing reefs found zooplankton depletion near the bottom but no enrichment aloft. In Moorea, where seawater is continuously recirculated out the lagoon and back across the reef crest onto the back reef, selection for upward swimming behavior may be especially strong, because the surface serves both as a refuge from predation and an optimum location for retention within the reef system. Planktivorous fish and corals that can forage or grow even marginally higher in the water column might have a substantial competitive advantage over those nearer the bottom on shallow reefs. Zooplankton abundance varied more over a few tens of centimeters vertical distance than it did between seasons or even between day and night indicating that great care must be taken to accurately assess the availability of zooplankton as food on shallow reefs.

Can mesophotic reefs replenish shallow reefs? Reduced coral reproductive performance casts a doubt.

PubMed

Shlesinger, Tom; Grinblat, Mila; Rapuano, Hanna; Amit, Tal; Loya, Yossi

2018-02-01

Mesophotic coral ecosystems (i.e., deep coral reefs at 30-120 m depth) appear to be thriving while many shallow reefs in the world are declining. Amid efforts to understand and manage their decline, it was suggested that mesophotic reefs might serve as natural refuges and a possible source of propagules for the shallow reefs. However, our knowledge of how reproductive performance of corals alters with depth is sparse. Here, we present a comprehensive study of the reproductive phenology, fecundity, and abundance of seven reef-building conspecific corals in shallow and mesophotic habitats. Significant differences were found in the synchrony and timing of gametogenesis and spawning between shallow and mesophotic coral populations. Thus, mesophotic populations exhibited delayed or protracted spawning events, which led to spawning of the mesophotic colonies in large proportions at times where the shallow ones had long been depleted of reproductive material. All species investigated demonstrated a substantial reduction in fecundity and/or oocyte sizes at mesophotic depths (40-60 m). Two species (Seriatopora hystrix and Galaxea fascicularis) displayed a reduction in both fecundity and oocyte size at mesophotic depths. Turbinaria reniformis had only reduced fecundity and Acropora squarrosa and Acropora valida only reduced oocyte size. In Montipora verrucosa, reduced fecundity was found during one annual reproductive season while, in the following year, only reduced oocyte size was found. In contrast, reduced oocyte size in mesophotic populations of Acropora squarrosa was consistent along three studied years. One species, Acropora pharaonis, was found to be infertile at mesophotic depths along two studied years. This indicates that reproductive performance decreases with depth; and that although some species are capable of reproducing at mesophotic depths, their contribution to the replenishment of shallow reefs may be inconsequential. Reduced reproductive performance with depth, combined with the possible narrower tolerance to environmental factors, further suggests that mesophotic corals may in fact be more vulnerable than previously conceived. Furthermore, we posit that the observed temporal segregation in reproduction could lead to assortative mating, and this, in turn, may facilitate adaptive divergence across depth. © 2017 by the Ecological Society of America.

Complementarity of Rotating Video and Underwater Visual Census for Assessing Species Richness, Frequency and Density of Reef Fish on Coral Reef Slopes

PubMed Central

Mallet, Delphine; Wantiez, Laurent; Lemouellic, Soazig; Vigliola, Laurent; Pelletier, Dominique

2014-01-01

Estimating diversity and abundance of fish species is fundamental for understanding community structure and dynamics of coral reefs. When designing a sampling protocol, one crucial step is the choice of the most suitable sampling technique which is a compromise between the questions addressed, the available means and the precision required. The objective of this study is to compare the ability to sample reef fish communities at the same locations using two techniques based on the same stationary point count method: one using Underwater Visual Census (UVC) and the other rotating video (STAVIRO). UVC and STAVIRO observations were carried out on the exact same 26 points on the reef slope of an intermediate reef and the associated inner barrier reefs. STAVIRO systems were always deployed 30 min to 1 hour after UVC and set exactly at the same place. Our study shows that; (i) fish community observations by UVC and STAVIRO differed significantly; (ii) species richness and density of large species were not significantly different between techniques; (iii) species richness and density of small species were higher for UVC; (iv) density of fished species was higher for STAVIRO and (v) only UVC detected significant differences in fish assemblage structure across reef type at the spatial scale studied. We recommend that the two techniques should be used in a complementary way to survey a large area within a short period of time. UVC may census reef fish within complex habitats or in very shallow areas such as reef flat whereas STAVIRO would enable carrying out a large number of stations focused on large and diver-averse species, particularly in the areas not covered by UVC due to time and depth constraints. This methodology would considerably increase the spatial coverage and replication level of fish monitoring surveys. PMID:24392126

Living in the Past: Phylogeography and Population Histories of Indo-Pacific Wrasses (Genus Halichoeres) in Shallow Lagoons versus Outer Reef Slopes

PubMed Central

Ludt, William B.; Bernal, Moisés A.; Bowen, Brian W.; Rocha, Luiz A.

2012-01-01

Sea level fluctuations during glacial cycles affect the distribution of shallow marine biota, exposing the continental shelf on a global scale, and displacing coral reef habitat to steep slopes on oceanic islands. In these circumstances we expect that species inhabiting lagoons should show shallow genetic architecture relative to species inhabiting more stable outer reefs. Here we test this expectation on an ocean-basin scale with four wrasses (genus Halichoeres): H. claudia (N = 194, with ocean-wide distribution) and H. ornatissimus (N = 346, a Hawaiian endemic) inhabit seaward reef slopes, whereas H. trimaculatus (N = 239) and H. margaritaceus (N = 118) inhabit lagoons and shallow habitats throughout the Pacific. Two mitochondrial markers (cytochrome oxidase I and control region) were sequenced to resolve population structure and history of each species. Haplotype and nucleotide diversity were similar among all four species. The outer reef species showed significantly less population structure, consistent with longer pelagic larval durations. Mismatch distributions and significant negative Fu’s F values indicate Pleistocene population expansion for all species, and (contrary to expectations) shallower histories in the outer slope species. We conclude that lagoonal wrasses may persist through glacial habitat disruptions, but are restricted to refugia during lower sea level stands. In contrast, outer reef slope species have homogeneous and well-connected populations through their entire ranges regardless of sea level fluctuations. These findings contradict the hypothesis that shallow species are less genetically diverse as a consequence of glacial cycles. PMID:22701597

Mesophotic coral-reef environments depress the reproduction of the coral Paramontastraea peresi in the Red Sea

NASA Astrophysics Data System (ADS)

Feldman, Bar; Shlesinger, Tom; Loya, Yossi

2018-03-01

With more than 450 studied species, coral reproduction is a well-known research field. However, the vast majority of coral reproduction research has focused exclusively on shallow reefs. The incentive for the present study was: (1) the recent accelerated global degradation of coral reefs; (2) the growing interest in mesophotic coral ecosystems (MCEs; 30-120 m depth) and their potential to serve as a larval source for shallow reefs; and (3) the lack of information on MCE coral reproduction. Here, we compare the reproduction and ecology of the depth-generalist coral Paramontastraea peresi between shallow (5-10 m) and mesophotic (40-45 m) habitats in the Gulf of Eilat/Aqaba, Red Sea. Field surveys were conducted to assess the living cover, abundance, and size frequency distribution of P. peresi. Four to six colonies from each habitat were sampled monthly between April 2015 and January 2017, and the gametogenesis cycles, fecundity, and oocyte sizes were measured. The reproductive cycle in the MCEs was shorter than in the shallow reef. Despite having larger polyps, the mesophotic colonies contained significantly smaller and fewer oocytes per polyp. In spite of the relatively stable environmental conditions of the MCEs, which may contribute to coral survival, scarcity of sunlight is probably a major energetic impediment to investment in reproduction by P. peresi at mesophotic depths. Further intensive reproductive studies in mesophotic reefs are thus required to assess the ability of corals in this environment to reproduce and constitute a larval source for depleted shallow-water reefs.

Dynamics of seawater carbonate chemistry, production, and calcification of a coral reef flat, Central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Albright, R.; Langdon, C.; Anthony, K. R. N.

2013-05-01

Ocean acidification is projected to shift coral reefs from a state of net accretion to one of net dissolution this century. Presently, our ability to predict global-scale changes to coral reef calcification is limited by insufficient data relating seawater carbonate chemistry parameters to in situ rates of reef calcification. Here, we investigate natural trends in carbonate chemistry of the Davies Reef flat in the central Great Barrier Reef on diel and seasonal timescales and relate these trends to benthic carbon fluxes by quantifying net ecosystem calcification (nec) and net community production (ncp). Results show that seawater carbonate chemistry of the Davies Reef flat is highly variable over both diel and seasonal timescales. pH (total scale) ranged from 7.92 to 8.17, pCO2 ranged from 272 to 542 μatm, and aragonite saturation state (Ωarag) ranged from 2.9 to 4.1. Diel cycles in carbonate chemistry were primarily driven by ncp, and warming explained 35% and 47% of the seasonal shifts in pCO2 and pH, respectively. Daytime ncp averaged 36 ± 19 mmol C m-2 h-1 in summer and 33 ± 13 mmol C m-2 h-1 in winter; nighttime ncp averaged -22 ± 20 and -7 ± 6 mmol C m-2 h-1 in summer and winter, respectively. Daytime nec averaged 11 ± 4 mmol CaCO3 m-2 h-1 in summer and 8 ± 3 mmol CaCO3 m-2 h-1 in winter, whereas nighttime nec averaged 2 ± 4 mmol and -1 ± 3 mmol CaCO3 m-2 h-1 in summer and winter, respectively. Net ecosystem calcification was positively correlated with Ωarag for both seasons. Linear correlations of nec and Ωarag indicate that the Davies Reef flat may transition from a state of net calcification to net dissolution at Ωarag values of 3.4 in summer and 3.2 in winter. Diel trends in Ωarag indicate that the reef flat is currently below this calcification threshold 29.6% of the time in summer and 14.1% of the time in winter.

Wave Transformation over a Fringing Coral Reef and the Importance of Low-Frequency Waves and Offshore Water Levels to Runup and Island Overtopping

NASA Astrophysics Data System (ADS)

Cheriton, O. M.; Storlazzi, C. D.; Rosenberger, K. J.

2016-02-01

Low-lying, reef-fringed islands are susceptible to sea-level rise and often subjected to overwash and flooding during large wave events. To quantify wave dynamics and wave-driven water levels on fringing coral reefs, wave gauges and a current meter were deployed for 5 months across two shore-normal transects on Roi-Namur, an atoll island in the Republic of the Marshall Islands. These observations captured two large wave events that had maximum wave heights greater than 6 m and peak periods of 16 s over the fore reef. The larger event coincided with a peak spring tide, leading to energetic, highly-skewed infragravity (0.04-0.004 Hz) and very low frequency (0.004-0.001 Hz) waves at the shoreline, which reached heights of 1.0 and 0.7 m, respectively. Water surface elevations, combined with wave runup, exceeded 3.7 m at the innermost reef flat adjacent to the toe of the beach, resulting in flooding of inland areas. This overwash occurred during a 3-hr time window that coincided with high tide and maximum low-frequency reef flat wave heights. The relatively low-relief characteristics of this narrow reef flat may further drive shoreline amplification of low-frequency waves due to resonance modes. These results demonstrate how the coupling of high offshore water levels with low-frequency reef flat wave energetics can lead to large impacts along atoll and fringing reef-lined shorelines, such as island overwash. These observations lend support to the hypothesis that predicted higher sea levels will lead to more frequent occurrences of both extreme shoreline runup and island overwash, threatening the sustainability of these islands.

Predictions of turbidity due to enhanced sediment resuspension resulting from sea-level rise on a fringing Coral Reef: Evidence from Molokai, Hawaii

USGS Publications Warehouse

Ogston, A.S.; Field, M.E.

2010-01-01

Accelerating sea-level rise associated with global climate change will affect sedimentary processes on coral reefs and other shoreline environments by increasing energy and sediment resuspension. On reefs, sedimentation is known to increase coral stress and bleaching as particles that settle on coral surfaces interfere with photosynthesis and feeding, and turbidity induced by suspended sediment reduces incident light levels. Using relationships developed from observations of wave orbital velocity, water-surface elevation, and suspended-sediment concentration on a fringing reef flat of Molokai, Hawaii, predictions of the average daily maximum in suspended-sediment concentration increase from ~11 mg/l to ~20 mg/l with 20 cm sea-level rise. The duration of time concentrations exceeds 10 mg/l increases from 9 to 37. An evaluation of the reduction of wave energy flux through breaking and frictional dissipation across the reef flat shows an increase of ~80 relative to the present will potentially reach the shoreline as sea level increases by 20 cm. Where the shoreline exists on low, flat terrain, the increased energy could cause significant erosion of the shoreline. Considering the sediment budget, the sediment flux is predicted to increase and removal of fine-grained sediment may be expedited on some fringing reefs, and sediment in storage on the inner reef could ultimately be reduced. However, increased shoreline erosion may add sediment and offset removal from the reef flat. The shifts in sediment availability and transport that will occur as result of a modest increase in sea level have wide application to fringing coral reefs elsewhere, as well as other shoreline environments. ?? 2010 the Coastal Education & Research Foundation (CERF).

Observations of wave transformation over a fringing coral reef and the importance of low-frequency waves and offshore water levels to runup, overwash, and coastal flooding

NASA Astrophysics Data System (ADS)

Cheriton, Olivia M.; Storlazzi, Curt D.; Rosenberger, Kurt J.

2016-05-01

Many low-lying tropical islands are susceptible to sea level rise and often subjected to overwash and flooding during large wave events. To quantify wave dynamics and wave-driven water levels on fringing coral reefs, a 5 month deployment of wave gauges and a current meter was conducted across two shore-normal transects on Roi-Namur Island in the Republic of the Marshall Islands. These observations captured two large wave events that had waves with maximum heights greater than 6 m with peak periods of 16 s over the fore reef. The larger event coincided with a peak spring tide, leading to energetic, highly skewed infragravity (0.04-0.004 Hz) and very low frequency (0.004-0.001 Hz) waves at the shoreline, which reached heights of 1.0 and 0.7 m, respectively. Water surface elevations, combined with wave runup, reached 3.7 m above the reef bed at the innermost reef flat adjacent to the toe of the beach, resulting in flooding of inland areas. This overwash occurred during a 3 h time window that coincided with high tide and maximum low-frequency reef flat wave heights. The relatively low-relief characteristics of this narrow reef flat may further drive shoreline amplification of low-frequency waves due to resonance modes. These results (1) demonstrate how the coupling of high offshore water levels with low-frequency reef flat wave energetics can lead to large impacts along fringing reef-lined shorelines, such as island overwash, and (2) lend support to the hypothesis that predicted higher sea levels will lead to more frequent occurrences of these extreme events, negatively impacting coastal resources and infrastructure.

Observations of wave transformation over a fringing coral reef and the importance of low-frequency waves and offshore water levels to runup, overwash, and coastal flooding

USGS Publications Warehouse

Cheriton, Olivia; Storlazzi, Curt; Rosenberger, Kurt

2016-01-01

Many low-lying tropical islands are susceptible to sea level rise and often subjected to overwash and flooding during large wave events. To quantify wave dynamics and wave-driven water levels on fringing coral reefs, a 5 month deployment of wave gauges and a current meter was conducted across two shore-normal transects on Roi-Namur Island in the Republic of the Marshall Islands. These observations captured two large wave events that had waves with maximum heights greater than 6 m with peak periods of 16 s over the fore reef. The larger event coincided with a peak spring tide, leading to energetic, highly skewed infragravity (0.04–0.004 Hz) and very low frequency (0.004–0.001 Hz) waves at the shoreline, which reached heights of 1.0 and 0.7 m, respectively. Water surface elevations, combined with wave runup, reached 3.7 m above the reef bed at the innermost reef flat adjacent to the toe of the beach, resulting in flooding of inland areas. This overwash occurred during a 3 h time window that coincided with high tide and maximum low-frequency reef flat wave heights. The relatively low-relief characteristics of this narrow reef flat may further drive shoreline amplification of low-frequency waves due to resonance modes. These results (1) demonstrate how the coupling of high offshore water levels with low-frequency reef flat wave energetics can lead to large impacts along fringing reef-lined shorelines, such as island overwash, and (2) lend support to the hypothesis that predicted higher sea levels will lead to more frequent occurrences of these extreme events, negatively impacting coastal resources and infrastructure.

Ecological impacts and management implications of reef walking on a tropical reef flat community.

PubMed

Williamson, Jane E; Byrnes, Evan E; Clark, Jennalee A; Connolly, David M; Schiller, Sabine E; Thompson, Jessica A; Tosetto, Louise; Martinelli, Julieta C; Raoult, Vincent

2017-01-30

Continued growth of tourism has led to concerns about direct and indirect impacts on the ecology of coral reefs and ultimate sustainability of these environments under such pressure. This research assessed impacts of reef walking by tourists on a relatively pristine reef flat community associated with an 'ecoresort' on the Great Barrier Reef, Australia. Heavily walked areas had lower abundances of live hard coral but greater amounts of dead coral and sediment. Abundances of macroalgae were not affected between sites. Coral-associated butterflyfish were less abundant and less diverse in more trampled sites. A manipulative experiment showed handling holothurians on reef walks had lasting negative impacts. This is the first study to show potential impacts of such handling on holothurians. Ecological impacts of reef walking are weighed against sociocultural benefits of a first hand experience in nature. Copyright © 2016 Elsevier Ltd. All rights reserved.

Human impacts on large benthic foraminifers near a densely populated area of Majuro Atoll, Marshall Islands.

PubMed

Osawa, Yoko; Fujita, Kazuhiko; Umezawa, Yu; Kayanne, Hajime; Ide, Yoichi; Nagaoka, Tatsutoshi; Miyajima, Toshihiro; Yamano, Hiroya

2010-08-01

Human impacts on sand-producing, large benthic foraminifers were investigated on ocean reef flats at the northeast Majuro Atoll, Marshall Islands, along a human population gradient. The densities of dominant foraminifers Calcarina and Amphistegina declined with distance from densely populated islands. Macrophyte composition on ocean reef flats differed between locations near sparsely or densely populated islands. Nutrient concentrations in reef-flat seawater and groundwater were high near or on densely populated islands. delta(15)N values in macroalgal tissues indicated that macroalgae in nearshore lagoons assimilate wastewater-derived nitrogen, whereas those on nearshore ocean reef flats assimilate nitrogen from other sources. These results suggest that increases in the human population result in high nutrient loading in groundwater and possibly into nearshore waters. High nutrient inputs into ambient seawater may have both direct and indirect negative effects on sand-producing foraminifers through habitat changes and/or the collapse of algal symbiosis. Copyright 2010 Elsevier Ltd. All rights reserved.

Abundance and diversity of anemonefishes and their host sea anemones at two mesophotic sites on the Great Barrier Reef, Australia

NASA Astrophysics Data System (ADS)

Bridge, T.; Scott, A.; Steinberg, D.

2012-12-01

Anemonefishes and their host sea anemones are iconic inhabitants of coral reef ecosystems. While studies have documented their abundance in shallow-water reef habitats in parts of the Indo-Pacific, none have examined these species on mesophotic reefs. In this study, we used autonomous underwater vehicle imagery to examine the abundance and diversity of anemones and anemonefishes at Viper Reef and Hydrographers Passage in the central Great Barrier Reef at depths between 50 and 65 m. A total of 37 host sea anemones (31 Entacmaea quadricolor and 6 Heteractis crispa) and 24 anemonefishes (23 Amphiprion akindynos and 1 A. perideraion) were observed. Densities were highest at Viper Reef, with 8.48 E. quadricolor and A. akindynos per 100 m2 of reef substratum. These results support the hypothesis that mesophotic reefs have many species common to shallow-water coral reefs and that many taxa may occur at depths greater than currently recognised.

Rising sea levels will reduce extreme temperature variations in tide-dominated reef habitats.

PubMed

Lowe, Ryan Joseph; Pivan, Xavier; Falter, James; Symonds, Graham; Gruber, Renee

2016-08-01

Temperatures within shallow reefs often differ substantially from those in the surrounding ocean; therefore, predicting future patterns of thermal stresses and bleaching at the scale of reefs depends on accurately predicting reef heat budgets. We present a new framework for quantifying how tidal and solar heating cycles interact with reef morphology to control diurnal temperature extremes within shallow, tidally forced reefs. Using data from northwestern Australia, we construct a heat budget model to investigate how frequency differences between the dominant lunar semidiurnal tide and diurnal solar cycle drive ~15-day modulations in diurnal temperature extremes. The model is extended to show how reefs with tidal amplitudes comparable to their depth, relative to mean sea level, tend to experience the largest temperature extremes globally. As a consequence, we reveal how even a modest sea level rise can substantially reduce temperature extremes within tide-dominated reefs, thereby partially offsetting the local effects of future ocean warming.

Stratigraphy and evolution of emerged Pleistocene reefs at the Red Sea coast of Sudan

NASA Astrophysics Data System (ADS)

Hamed, Basher; Bussert, Robert; Dominik, Wilhelm

2016-02-01

Emerged Pleistocene coral reefs constitute a prominent landform along the Red Sea coast of Sudan. They are well exposed with a thickness of up to 12 m and extend over a width of about 3 km parallel to the coastline. Four major reef units that represent different reef zones are distinguished. Unit 1 is located directly at the coastline and is assigned to the rock-reef rim, while unit 2 represents the reef-front zone. Unit 3 is attributed to the reef-flat zone and unit 4 to the back-reef zone. The stratigraphic position and age of the four units respectively the facies zones are based on field relationships and δ18O analysis. Results of δ18O analysis of coral, gastropod and bivalve samples were correlated to previous age dating of correlative reefs in Sudan and other parts of the Red Sea region. Estimation of reef ages was mainly based on δ18O values of the reef-front zone (unit 2) and the observed sedimentary succession of the reefs. δ18O values of two Porites coral samples from the reef-front zone strongly suggest equivalent ages of 120 and 122 ka that correspond to marine isotope stage MIS 5.5. Based on δ18O values and the field relationship to the reef-front zone, ages of reef-flat zone (unit 3) and back-reef zone (unit 4) could be assigned to MIS 9 and MIS 7 respectively. MIS 5.1 is suggested for the reef-rock rim (unit 1). The relationship of the reef zones to individual MIS might be explained by the predominance of a specific zone during a certain stage, while other facies were less well developed and/or later eroded by wave action. The reef unit most distal from the recent coastline formed during interglacial stage MIS 7, while former studies assign this unit to interglacial stage MIS 9. Unique flourishing, high diversity and excellent preservation of corals in the back-reef unit of MIS 7 reflect growth in troughs landward of the oldest reef-flat formed during previous interglacial stage MIS 9.

Assessing Caribbean Shallow and Mesophotic Reef Fish Communities Using Baited-Remote Underwater Video (BRUV) and Diver-Operated Video (DOV) Survey Techniques.

PubMed

Andradi-Brown, Dominic A; Macaya-Solis, Consuelo; Exton, Dan A; Gress, Erika; Wright, Georgina; Rogers, Alex D

2016-01-01

Fish surveys form the backbone of reef monitoring and management initiatives throughout the tropics, and understanding patterns in biases between techniques is crucial if outputs are to address key objectives optimally. Often biases are not consistent across natural environmental gradients such as depth, leading to uncertainty in interpretation of results. Recently there has been much interest in mesophotic reefs (reefs from 30-150 m depth) as refuge habitats from fishing pressure, leading to many comparisons of reef fish communities over depth gradients. Here we compare fish communities using stereo-video footage recorded via baited remote underwater video (BRUV) and diver-operated video (DOV) systems on shallow and mesophotic reefs in the Mesoamerican Barrier Reef, Caribbean. We show inconsistent responses across families, species and trophic groups between methods across the depth gradient. Fish species and family richness were higher using BRUV at both depth ranges, suggesting that BRUV is more appropriate for recording all components of the fish community. Fish length distributions were not different between methods on shallow reefs, yet BRUV recorded more small fish on mesophotic reefs. However, DOV consistently recorded greater relative fish community biomass of herbivores, suggesting that studies focusing on herbivores should consider using DOV. Our results highlight the importance of considering what component of reef fish community researchers and managers are most interested in surveying when deciding which survey technique to use across natural gradients such as depth.

Assessing Caribbean Shallow and Mesophotic Reef Fish Communities Using Baited-Remote Underwater Video (BRUV) and Diver-Operated Video (DOV) Survey Techniques

PubMed Central

Macaya-Solis, Consuelo; Exton, Dan A.; Gress, Erika; Wright, Georgina; Rogers, Alex D.

2016-01-01

Fish surveys form the backbone of reef monitoring and management initiatives throughout the tropics, and understanding patterns in biases between techniques is crucial if outputs are to address key objectives optimally. Often biases are not consistent across natural environmental gradients such as depth, leading to uncertainty in interpretation of results. Recently there has been much interest in mesophotic reefs (reefs from 30–150 m depth) as refuge habitats from fishing pressure, leading to many comparisons of reef fish communities over depth gradients. Here we compare fish communities using stereo-video footage recorded via baited remote underwater video (BRUV) and diver-operated video (DOV) systems on shallow and mesophotic reefs in the Mesoamerican Barrier Reef, Caribbean. We show inconsistent responses across families, species and trophic groups between methods across the depth gradient. Fish species and family richness were higher using BRUV at both depth ranges, suggesting that BRUV is more appropriate for recording all components of the fish community. Fish length distributions were not different between methods on shallow reefs, yet BRUV recorded more small fish on mesophotic reefs. However, DOV consistently recorded greater relative fish community biomass of herbivores, suggesting that studies focusing on herbivores should consider using DOV. Our results highlight the importance of considering what component of reef fish community researchers and managers are most interested in surveying when deciding which survey technique to use across natural gradients such as depth. PMID:27959907

Microfacies and depositional environments of the Late Ordovician Lianglitage Formation at the Tazhong Uplift in the Tarim Basin of Northwest China

NASA Astrophysics Data System (ADS)

Gao, Da; Lin, Changsong; Yang, Haijun; Zuo, Fanfan; Cai, Zhenzhong; Zhang, Lijuan; Liu, Jingyan; Li, Hong

2014-04-01

The Late Ordovician Lianglitage Formation comprises 13 microfacies (Mf1-Mf13) that were deposited on a carbonate platform at the Tazhong Uplift of the Tarim Basin in Northwest China. Each type of microfacies indicates a specific depositional environment with a certain level of wave energy. Four primary groups of microfacies associations (MA1-MA4) were determined. These associations represent different depositional facies, including reef-shoal facies in the platform margin (MA1), carbonate sand shoal facies (MA2) and oncoid shoal (MA3) on open platforms, and lagoon and tidal flat facies (MA4) in the platform interior. Each microfacies association was generated in a fourth-order sedimentary sequence developing within third-order sequences (SQ1, SQ2, and SQ3, from bottom to top), showing a shallowing-upward trend. High-frequency sequences and facies correlation between wells suggests that the reef-shoal facies more successively developed in the southeastern part of the platform margin, and high-energy microfacies were more strictly confined by the top boundary of fourth-order sequences in the northwestern part of the platform. The highstand systems tract (HST) of the SQ2 is characterized by reef-shoals that developed along the platform margin and tidal flats and lagoons that developed in the platform interior, while the SQ3 is characterized by the oncoid shoal facies that generally developed on the uplift due to a regionally extensive transgression that occurred during the latter part of the Late Ordovician. The results of this study can be used for investigating the development and distribution of potential reservoirs; the reservoirs in southeastern part of the platform margin may be of premium quality because the high-energy microfacies were best preserved there.

The influence of micro-topography and external bioerosion on coral-reef-building organisms: recruitment, community composition and carbonate production over time

NASA Astrophysics Data System (ADS)

Mallela, Jennie

2018-03-01

The continued health and function of tropical coral reefs is highly dependent on the ability of reef-building organisms to build large, complex, three-dimensional structures that continue to accrete and evolve over time. The recent deterioration of reef health globally, including loss of coral cover, has resulted in significant declines in architectural complexity at a large, reef-scape scale. Interestingly, the fine-scale role of micro-structure in initiating and facilitating future reef development and calcium carbonate production has largely been overlooked. In this study, experimental substrates with and without micro-ridges were deployed in the lagoon at One Tree Island for 34 months. This study assessed how the presence or absence of micro-ridges promoted recruitment by key reef-building sclerobionts (corals and encrusters) and their subsequent development at micro (mm) and macro (cm) scales. Experimental plates were examined after 11 and 34 months to assess whether long-term successional and calcification processes on different micro-topographies led to convergent or divergent communities over time. Sclerobionts were most prevalent in micro-grooves when they were available. Interestingly, in shallow lagoon reef sites characterised by shoals of small parrotfish and low urchin abundance, flat substrates were also successfully recruited to. Mean rates of carbonate production were 374 ± 154 (SD) g CaCO3 m-2 yr-1 within the lagoon. Substrates with micro-ridges were characterised by significantly greater rates of carbonate production than smooth substrates. The orientation of the substrate and period of immersion also significantly impacted rates of carbonate production, with CaCO3 on cryptic tiles increasing by 28% between 11 and 34 months. In contrast, rates on exposed tiles declined by 35% over the same time. In conclusion, even at sites characterised by small-sized parrotfish and low urchin density, micro-topography is an important settlement niche clearly favouring sclerobiont early life-history processes and subsequent carbonate production.

Identification and classification of very low frequency waves on a coral reef flat

USGS Publications Warehouse

Gawehn, Matthijs; van Dongeran, Ap; van Rooijen, Arnold; Storlazzi, Curt; Cheriton, Olivia; Reniers, Ad

2016-01-01

Very low frequency (VLF, 0.001–0.005 Hz) waves are important drivers of flooding of low-lying coral reef-islands. In particular, VLF wave resonance is known to drive large wave runup and subsequent overwash. Using a 5 month data set of water levels and waves collected along a cross-reef transect on Roi-Namur Island in the Republic of the Marshall Islands, the observed VLF motions were categorized into four different classes: (1) resonant, (2) (nonresonant) standing, (3) progressive-growing, and (4) progressive-dissipative waves. Each VLF class is set by the reef flat water depth and, in the case of resonance, the incident-band offshore wave period. Using an improved method to identify VLF wave resonance, we find that VLF wave resonance caused prolonged (∼0.5–6.0 h), large-amplitude water surface oscillations at the inner reef flat ranging in wave height from 0.14 to 0.83 m. It was induced by relatively long-period, grouped, incident-band waves, and occurred under both storm and nonstorm conditions. Moreover, observed resonant VLF waves had nonlinear, bore-like wave shapes, which likely have a larger impact on the shoreline than regular, sinusoidal waveforms. As an alternative technique to the commonly used Fast Fourier Transformation, we propose the Hilbert-Huang Transformation that is more computationally expensive but can capture the wave shape more accurately. This research demonstrates that understanding VLF waves on reef flats is important for evaluating coastal flooding hazards.

Identification and classification of very low frequency waves on a coral reef flat

NASA Astrophysics Data System (ADS)

Gawehn, Matthijs; van Dongeren, Ap; van Rooijen, Arnold; Storlazzi, Curt D.; Cheriton, Olivia M.; Reniers, Ad

2016-10-01

Very low frequency (VLF, 0.001-0.005 Hz) waves are important drivers of flooding of low-lying coral reef-islands. In particular, VLF wave resonance is known to drive large wave runup and subsequent overwash. Using a 5 month data set of water levels and waves collected along a cross-reef transect on Roi-Namur Island in the Republic of the Marshall Islands, the observed VLF motions were categorized into four different classes: (1) resonant, (2) (nonresonant) standing, (3) progressive-growing, and (4) progressive-dissipative waves. Each VLF class is set by the reef flat water depth and, in the case of resonance, the incident-band offshore wave period. Using an improved method to identify VLF wave resonance, we find that VLF wave resonance caused prolonged (˜0.5-6.0 h), large-amplitude water surface oscillations at the inner reef flat ranging in wave height from 0.14 to 0.83 m. It was induced by relatively long-period, grouped, incident-band waves, and occurred under both storm and nonstorm conditions. Moreover, observed resonant VLF waves had nonlinear, bore-like wave shapes, which likely have a larger impact on the shoreline than regular, sinusoidal waveforms. As an alternative technique to the commonly used Fast Fourier Transformation, we propose the Hilbert-Huang Transformation that is more computationally expensive but can capture the wave shape more accurately. This research demonstrates that understanding VLF waves on reef flats is important for evaluating coastal flooding hazards.

Bathymetric distribution of foraminifera in Jamaican reef environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, R.E.; Liddell, W.D.

1985-02-01

Recent foraminifera inhabiting Jamaican north-coast fringing reefs display variations in distributional patterns that are related to bathymetry and reef morphology. Sediment samples containing foraminifera were collected along a profile that traversed the back reef (depth 1-2 m), fore-reef terrace (3-15 m), fore-reef escarpment (15-27 m), fore-reef slope (30-55 m), and upper deep fore reef (70 m). Approximately 150 species distributed among 80 genera were identified from the samples. Preliminary analyses indicate that diversity values (S, H') are lowest on the fore-reef terrace (79, 3.0, respectively), increase similarly in back-reef and fore-reef escarpment and slope settings (93, 3.4), and are highestmore » on the deep fore reef (109, 3.7). Larger groupings (suborders) exhibit distinct bathymetric trends with miliolids occurring more commonly in back-reef (comprising 51% of the fauna) than in fore-reef (28%) zones, whereas agglutinated and planktonic species occur more commonly in deeper reef (> 15 m, 9% and 4%, respectively) than in shallower reef zones (< 15 m, 3%, and 0.5%, respectively). Among the more common species Amphistegina gibbosa (Rotolina) is much more abundant in fore-reef (3%) environments, and Sorites marginalis (Miliolina) occurs almost exclusively in the back reef, where it comprises 5.5% of the fauna. Q-mode cluster analysis, involving all species collected, enabled the delineation of back-reef, shallow fore-reef, and deeper fore-reef biofacies, also indicating the potential utility of foraminiferal distributions in detailed paleoenvironment interpretations of ancient reef settings.« less

Diurnal variability in turbidity and coral fluorescence on a fringing reef flat: Southern Molokai, Hawaii

USGS Publications Warehouse

Piniak, G.A.; Storlazzi, C.D.

2008-01-01

Terrigenous sediment in the nearshore environment can pose both acute and chronic stresses to coral reefs. The reef flat off southern Molokai, Hawaii, typically experiences daily turbidity events, in which trade winds and tides combine to resuspend terrigenous sediment and transport it alongshore. These chronic turbidity events could play a role in restricting coral distribution on the reef flat by reducing the light available for photosynthesis. This study describes the effects of these turbidity events on the Hawaiian reef coral Montipora capitata using in situ diurnal measurements of turbidity, light levels, and chlorophyll fluorescence yield via pulse-amplitude-modulated (PAM) fluorometry. Average surface irradiance was similar in the morning and the afternoon, while increased afternoon turbidity resulted in lower subsurface irradiance, higher fluorescence yield (??F/Fm???), and lower relative electron transport rates (rETR). Model calculations based on observed light extinction coeffecients suggest that in the absence of turbidity events, afternoon subsurface irradiances would be 1.43 times higher than observed, resulting in rETR for M. capitata that are 1.40 times higher.

Rising sea levels will reduce extreme temperature variations in tide-dominated reef habitats

PubMed Central

Lowe, Ryan Joseph; Pivan, Xavier; Falter, James; Symonds, Graham; Gruber, Renee

2016-01-01

Temperatures within shallow reefs often differ substantially from those in the surrounding ocean; therefore, predicting future patterns of thermal stresses and bleaching at the scale of reefs depends on accurately predicting reef heat budgets. We present a new framework for quantifying how tidal and solar heating cycles interact with reef morphology to control diurnal temperature extremes within shallow, tidally forced reefs. Using data from northwestern Australia, we construct a heat budget model to investigate how frequency differences between the dominant lunar semidiurnal tide and diurnal solar cycle drive ~15-day modulations in diurnal temperature extremes. The model is extended to show how reefs with tidal amplitudes comparable to their depth, relative to mean sea level, tend to experience the largest temperature extremes globally. As a consequence, we reveal how even a modest sea level rise can substantially reduce temperature extremes within tide-dominated reefs, thereby partially offsetting the local effects of future ocean warming. PMID:27540589

Coral reef metabolism and carbon chemistry dynamics of a coral reef flat

NASA Astrophysics Data System (ADS)

Albright, Rebecca; Benthuysen, Jessica; Cantin, Neal; Caldeira, Ken; Anthony, Ken

2015-05-01

Global carbon emissions continue to acidify the oceans, motivating growing concern for the ability of coral reefs to maintain net positive calcification rates. Efforts to develop robust relationships between coral reef calcification and carbonate parameters such as aragonite saturation state (Ωarag) aim to facilitate meaningful predictions of how reef calcification will change in the face of ocean acidification. Here we investigate natural trends in carbonate chemistry of a coral reef flat over diel cycles and relate these trends to benthic carbon fluxes by quantifying net community calcification and net community production. We find that, despite an apparent dependence of calcification on Ωarag seen in a simple pairwise relationship, if the dependence of net calcification on net photosynthesis is accounted for, knowing Ωarag does not add substantial explanatory value. This suggests that, over short time scales, the control of Ωarag on net calcification is weak relative to factors governing net photosynthesis.

Nutrients, high light, and shallow depths favor the expansion of the brown macroalgae Turbinaria ornata in the coral reefs of Mo'orea, French Polynesia

NASA Astrophysics Data System (ADS)

Rogers, J.; Cordoba, G.; Nieves, M.; Barber, P. H.; Fong, P.; Sura, S.

2016-02-01

Coral reefs provide food, recreation and economic resources for billions of people. Despite this importance, anthropogenic stressors including climate change and nutrification threaten coral reefs globally, causing phase-shifts to algal dominated ecosystems and loss of coral habitats. Throughout the tropical South Pacific, the brown macroalgae Turbinaria ornata is expanding its range and now dominates areas where corals used to thrive, especially shallow areas on fringing reefs of French Polynesia. Abiotic factors like light and nutrient availability could enhance the expansion of T. ornata by promoting its growth or by making it physically tougher, which could reduce herbivory pressure and enhance its survival in high energy zones. To understand the abiotic factors favoring growth and survival of T. ornata in Mo'orea, French Polynesia, we conducted a field experiment testing the effect of nutrients (+/- fertilizer), depth (1m within Turbinaria zone, 1.5m at border, 2m below depth distribution), and light (+/- shade) on the growth and toughness of T. ornata. Three-factor ANOVA showed that an interaction between nutrients and light favored T. ornata biomass accumulation (p=0.04). In addition, T. ornata from shallow depths were significantly tougher than intermediate depths (p=0.01). These results imply that nutrient enrichment combined with high light levels common in shallow coral reefs may promote growth and expansion of T. ornata to near-shore reef environments. Increased survival and population growth is likely further enhanced by increased toughness of T. ornata in shallow areas, which may limit herbivore grazing and improve survival in strong wave action or currents. Future research should examine whether reducing nutrient loading to coastal waters may limit the expansion of T. ornata in the South Pacific.

Nutrients, High Light and Shallow Depths Favor the Expansion of the Brown Macroalgae Turbinaria ornata in the Coral Reefs of Mo'orea, French Polynesia

NASA Astrophysics Data System (ADS)

Nieves, M.; Cordoba, G.; Rogers, J.

2016-02-01

Coral reefs provide food, recreation and economic resources for billions of people. Despite this importance, anthropogenic stressors including climate change and nutrification threaten coral reefs globally, causing phase-shifts to algal dominated ecosystems and loss of coral habitats. Throughout the tropical South Pacific, the brown macroalgae Turbinaria ornata is expanding its range and now dominates areas where corals used to thrive, especially shallow areas on fringing reefs of French Polynesia. Abiotic factors like light and nutrient availability could enhance the expansion of T. ornata by promoting its growth or by making it physically tougher, which could reduce herbivory pressure and enhance its survival in high energy zones. To understand the abiotic factors favoring growth and survival of T. ornata in Mo'orea, French Polynesia, we conducted a field experiment testing the effect of nutrients (+/- fertilizer), depth (1m within Turbinaria zone, 1.5m at border, 2m below depth distribution), and light (+/- shade) on the growth and toughness of T. ornata. Three-factor ANOVA showed that an interaction between nutrients and light favored T. ornata biomass accumulation (p=0.04). In addition, T. ornata from shallow depths were significantly tougher than those at intermediate depths (p=0.01). These results imply that nutrient enrichment combined with high light levels common in shallow coral reefs may promote growth and expansion of T. ornata to near-shore reef environments. Increased survival and population growth is likely further enhanced by increased toughness of T. ornata in shallow areas, which may limit herbivore grazing and improve survival in strong wave action or currents. Future research should examine whether reducing nutrient loading to coastal waters may limit the expansion of T. ornata in the South Pacific.

Fitness consequences of habitat variability, trophic position, and energy allocation across the depth distribution of a coral-reef fish

NASA Astrophysics Data System (ADS)

Goldstein, E. D.; D'Alessandro, E. K.; Sponaugle, S.

2017-09-01

Environmental clines such as latitude and depth that limit species' distributions may be associated with gradients in habitat suitability that can affect the fitness of an organism. With the global loss of shallow-water photosynthetic coral reefs, mesophotic coral ecosystems ( 30-150 m) may be buffered from some environmental stressors, thereby serving as refuges for a range of organisms including mobile obligate reef dwellers. Yet habitat suitability may be diminished at the depth boundary of photosynthetic coral reefs. We assessed the suitability of coral-reef habitats across the majority of the depth distribution of a common demersal reef fish ( Stegastes partitus) ranging from shallow shelf (SS, <10 m) and deep shelf (DS, 20-30 m) habitats in the Florida Keys to mesophotic depths (MP, 60-70 m) at Pulley Ridge on the west Florida Shelf. Diet, behavior, and potential energetic trade-offs differed across study sites, but did not always have a monotonic relationship with depth, suggesting that some drivers of habitat suitability are decoupled from depth and may be linked with geographic location or the local environment. Feeding and diet composition differed among depths with the highest consumption of annelids, lowest ingestion of appendicularians, and the lowest gut fullness in DS habitats where predator densities were highest and fish exhibited risk-averse behavior that may restrict foraging. Fish in MP environments had a broader diet niche, higher trophic position, and higher muscle C:N ratios compared to shallower environments. High C:N ratios suggest increased tissue lipid content in fish in MP habitats that coincided with higher investment in reproduction based on gonado-somatic index. These results suggest that peripheral MP reefs are suitable habitats for demersal reef fish and may be important refuges for organisms common on declining shallow coral reefs.

The role of coral reef rugosity in dissipating wave energy and coastal protection

NASA Astrophysics Data System (ADS)

Harris, Daniel; Rovere, Alessio; Parravicini, Valeriano; Casella, Elisa

2016-04-01

Coral reefs are the most effective natural barrier in dissipating wave energy through breaking and bed friction. The attenuation of wave energy by coral reef flats is essential in the protection and stability of coral reef aligned coasts and reef islands. However, the effectiveness of wave energy dissipation by coral reefs may be diminished under future climate change scenarios with a potential reduction of coral reef rugosity due to increased stress environmental stress on corals. The physical roughness or rugosity of coral reefs is directly related to ecological diversity, reef health, and hydrodynamic roughness. However, the relationship between physical roughness and hydrodynamic roughness is not well understood despite the crucial role of bed friction in dissipating wave energy in coral reef aligned coasts. We examine the relationship between wave energy dissipation across a fringing reef in relation to the cross-reef ecological zonation and the benthic hydrodynamic roughness. Waves were measured by pressure transducers in a cross-reef transect on the reefs flats and post processed on a wave by wave basis to determine wave statistics such as significant wave height and wave period. Results from direct wave measurement were then used to calibrate a 1D wave dissipation model that incorporates dissipation functions due to bed friction and wave breaking. This model was used to assess the bed roughness required to produce the observed wave height dissipation during propagation from deep water and across the coral reef flats. Changes in wave dissipation was also examined under future scenarios of sea level rise and reduced bed roughness. Three dimensional models of the benthic reef structure were produced through structure-from-motion photogrammetry surveys. Reef rugosity was then determined from these surveys and related to the roughness results from the calibrated model. The results indicate that applying varying roughness coefficients as the benthic ecological assemblage changes produces the most accurate assessment of wave energy dissipation across the reef flat. However, the modelled results of bed roughness (e.g. 0.01 for the fore-reef slope) were different to the directly measured rugosity values (0.05 for the fore-reef slope) from three dimension structure-from-motion surveys. In spite of this, the modelled and directly measured values of roughness are similar considering the difficulties outlined in previous research when relating the coral reef structural complexity to a single value of hydrodynamic roughness. Bed roughness was shown to be a secondary factor behind wave breaking in dissipating wave energy. However, without bed friction waves could be an order of magnitude higher in the back-reef environment. Bed friction is also increasingly important in wave dissipation at higher sea levels as wave energy dissipation due to wave breaking is reduced at greater depths. This shows that maintaining a structurally diverse and healthy reef is crucial under future sea level rise scenarios in order to maintain the protection of coastal environments. These results also indicate that significant geomorphic change in coastal environments will occur due to reduced wave dissipation at higher sea levels unless reefs are capable of keeping up with forecasted sea level rise.

Effects of sandfish (Holothuria scabra) removal on shallow-water sediments in Fiji.

PubMed

Lee, Steven; Ford, Amanda K; Mangubhai, Sangeeta; Wild, Christian; Ferse, Sebastian C A

2018-01-01

Sea cucumbers play an important role in the recycling and remineralization of organic matter (OM) in reef sands through feeding, excretion, and bioturbation processes. Growing demand from Asian markets has driven the overexploitation of these animals globally. The implications of sea cucumber fisheries for shallow coastal ecosystems and their management remain poorly understood. To address this knowledge gap, the current study manipulated densities of Holothuria scabra within enclosures on a reef flat in Fiji, between August 2015 and February 2016, to study the effects of sea cucumber removal on sedimentary function as a biocatalytic filter system. Three treatments were investigated: (i) high density (350 g m -2 wet weight; ca . 15 individuals); (ii) natural density (60 g m -2 ; ca . 3 individuals); and (iii) exclusion (0 g m -2 ). Quantity of sediment reworked through ingestion by H. scabra , grain size distribution, O 2 penetration depth, and sedimentary oxygen consumption (SOC) were quantified within each treatment. Findings revealed that the natural population of H. scabra at the study site can rework ca . 10,590 kg dry sediment 1,000 m -2 year -1 ; more than twice the turnover rate recorded for H. atra and Stichopus chloronotus . There was a shift towards finer fraction grains in the high treatment. In the exclusion treatment, the O 2 penetration depth decreased by 63% following a 6 °C increase in water temperature over the course of two months, while in the high treatment no such change was observed. SOC rates increased ca . two-fold in the exclusion treatment within the first month, and were consistently higher than in the high treatment. These results suggest that the removal of sea cucumbers can reduce the capacity of sediments to buffer OM pulses, impeding the function and productivity of shallow coastal ecosystems.

Effects of sandfish (Holothuria scabra) removal on shallow-water sediments in Fiji

PubMed Central

Ford, Amanda K.; Mangubhai, Sangeeta; Wild, Christian; Ferse, Sebastian C.A.

2018-01-01

Sea cucumbers play an important role in the recycling and remineralization of organic matter (OM) in reef sands through feeding, excretion, and bioturbation processes. Growing demand from Asian markets has driven the overexploitation of these animals globally. The implications of sea cucumber fisheries for shallow coastal ecosystems and their management remain poorly understood. To address this knowledge gap, the current study manipulated densities of Holothuria scabra within enclosures on a reef flat in Fiji, between August 2015 and February 2016, to study the effects of sea cucumber removal on sedimentary function as a biocatalytic filter system. Three treatments were investigated: (i) high density (350 g m−2 wet weight; ca. 15 individuals); (ii) natural density (60 g m−2; ca. 3 individuals); and (iii) exclusion (0 g m−2). Quantity of sediment reworked through ingestion by H. scabra, grain size distribution, O2 penetration depth, and sedimentary oxygen consumption (SOC) were quantified within each treatment. Findings revealed that the natural population of H. scabra at the study site can rework ca. 10,590 kg dry sediment 1,000 m−2 year−1; more than twice the turnover rate recorded for H. atra and Stichopus chloronotus. There was a shift towards finer fraction grains in the high treatment. In the exclusion treatment, the O2 penetration depth decreased by 63% following a 6 °C increase in water temperature over the course of two months, while in the high treatment no such change was observed. SOC rates increased ca. two-fold in the exclusion treatment within the first month, and were consistently higher than in the high treatment. These results suggest that the removal of sea cucumbers can reduce the capacity of sediments to buffer OM pulses, impeding the function and productivity of shallow coastal ecosystems. PMID:29796344

Spatial and temporal variation in reef-scale carbonate storage of large benthic foraminifera: a case study on One Tree Reef

NASA Astrophysics Data System (ADS)

Doo, Steve S.; Hamylton, Sarah; Finfer, Joshua; Byrne, Maria

2017-03-01

Large benthic foraminifera (LBFs) are a vital component of coral reef carbonate production, often overlooked due to their small size. These super-abundant calcifiers are crucial to reef calcification by generation of lagoon and beach sands. Reef-scale carbonate production by LBFs is not well understood, and seasonal fluctuations in this important process are largely unquantified. The biomass of five LBF species in their algal flat habitat was quantified in the austral winter (July 2013), spring (October 2013), and summer (February 2014) at One Tree Reef. WorldView-2 satellite images were used to characterize and create LBF habitat maps based on ground-referenced photographs of algal cover. Habitat maps and LBF biomass measurements were combined to estimate carbonate storage across the entire reef flat. Total carbonate storage of LBFs on the reef flat ranged from 270 tonnes (winter) to 380 tonnes (summer). Satellite images indicate that the habitat area used by LBFs ranged from 0.6 (winter) to 0.71 km2 (spring) of a total possible area of 0.96 km2. LBF biomass was highest in the winter when algal habitat area was lowest, but total carbonate storage was the highest in the summer, when algal habitat area was intermediate. Our data suggest that biomass measurements alone do not capture total abundance of LBF populations (carbonate storage), as the area of available habitat is variable. These results suggest LBF carbonate production studies that measure biomass in discrete locations and single time points fail to capture accurate reef-scale production by not incorporating estimates of the associated algal habitat. Reef-scale measurements in this study can be incorporated into carbonate production models to determine the role of LBFs in sedimentary landforms (lagoons, beaches, etc.). Based on previous models of entire reef metabolism, our estimates indicate that LBFs contribute approximately 3.9-5.4% of reef carbonate budgets, a previously underappreciated carbon sink.

Six Month In Situ High-Resolution Carbonate Chemistry and Temperature Study on a Coral Reef Flat Reveals Asynchronous pH and Temperature Anomalies.

PubMed

Kline, David I; Teneva, Lida; Hauri, Claudine; Schneider, Kenneth; Miard, Thomas; Chai, Aaron; Marker, Malcolm; Dunbar, Rob; Caldeira, Ken; Lazar, Boaz; Rivlin, Tanya; Mitchell, Brian Gregory; Dove, Sophie; Hoegh-Guldberg, Ove

2015-01-01

Understanding the temporal dynamics of present thermal and pH exposure on coral reefs is crucial for elucidating reef response to future global change. Diel ranges in temperature and carbonate chemistry parameters coupled with seasonal changes in the mean conditions define periods during the year when a reef habitat is exposed to anomalous thermal and/or pH exposure. Anomalous conditions are defined as values that exceed an empirically estimated threshold for each variable. We present a 200-day time series from June through December 2010 of carbonate chemistry and environmental parameters measured on the Heron Island reef flat. These data reveal that aragonite saturation state, pH, and pCO2 were primarily modulated by biologically-driven changes in dissolved organic carbon (DIC) and total alkalinity (TA), rather than salinity and temperature. The largest diel temperature ranges occurred in austral spring, in October (1.5 - 6.6°C) and lowest diel ranges (0.9 - 3.2°C) were observed in July, at the peak of winter. We observed large diel total pH variability, with a maximum range of 7.7 - 8.5 total pH units, with minimum diel average pH values occurring during spring and maximum during fall. As with many other reefs, the nighttime pH minima on the reef flat were far lower than pH values predicted for the open ocean by 2100. DIC and TA both increased from June (end of Fall) to December (end of Spring). Using this high-resolution dataset, we developed exposure metrics of pH and temperature individually for intensity, duration, and severity of low pH and high temperature events, as well as a combined metric. Periods of anomalous temperature and pH exposure were asynchronous on the Heron Island reef flat, which underlines the importance of understanding the dynamics of co-occurrence of multiple stressors on coastal ecosystems.

Six Month In Situ High-Resolution Carbonate Chemistry and Temperature Study on a Coral Reef Flat Reveals Asynchronous pH and Temperature Anomalies

PubMed Central

Kline, David I.; Teneva, Lida; Hauri, Claudine; Schneider, Kenneth; Miard, Thomas; Chai, Aaron; Marker, Malcolm; Dunbar, Rob; Caldeira, Ken; Lazar, Boaz; Rivlin, Tanya; Mitchell, Brian Gregory; Dove, Sophie; Hoegh-Guldberg, Ove

2015-01-01

Understanding the temporal dynamics of present thermal and pH exposure on coral reefs is crucial for elucidating reef response to future global change. Diel ranges in temperature and carbonate chemistry parameters coupled with seasonal changes in the mean conditions define periods during the year when a reef habitat is exposed to anomalous thermal and/or pH exposure. Anomalous conditions are defined as values that exceed an empirically estimated threshold for each variable. We present a 200-day time series from June through December 2010 of carbonate chemistry and environmental parameters measured on the Heron Island reef flat. These data reveal that aragonite saturation state, pH, and pCO2 were primarily modulated by biologically-driven changes in dissolved organic carbon (DIC) and total alkalinity (TA), rather than salinity and temperature. The largest diel temperature ranges occurred in austral spring, in October (1.5 – 6.6°C) and lowest diel ranges (0.9 – 3.2°C) were observed in July, at the peak of winter. We observed large diel total pH variability, with a maximum range of 7.7 – 8.5 total pH units, with minimum diel average pH values occurring during spring and maximum during fall. As with many other reefs, the nighttime pH minima on the reef flat were far lower than pH values predicted for the open ocean by 2100. DIC and TA both increased from June (end of Fall) to December (end of Spring). Using this high-resolution dataset, we developed exposure metrics of pH and temperature individually for intensity, duration, and severity of low pH and high temperature events, as well as a combined metric. Periods of anomalous temperature and pH exposure were asynchronous on the Heron Island reef flat, which underlines the importance of understanding the dynamics of co-occurrence of multiple stressors on coastal ecosystems. PMID:26039687

In four shallow and mesophotic tropical reef sponges from Guam the microbial community largely depends on host identity

PubMed Central

Steinert, Georg; Taylor, Michael W.; Deines, Peter; Simister, Rachel L.; de Voogd, Nicole J.; Hoggard, Michael

2016-01-01

Sponges (phylum Porifera) are important members of almost all aquatic ecosystems, and are renowned for hosting often dense and diverse microbial communities. While the specificity of the sponge microbiota seems to be closely related to host phylogeny, the environmental factors that could shape differences within local sponge-specific communities remain less understood. On tropical coral reefs, sponge habitats can span from shallow areas to deeper, mesophotic sites. These habitats differ in terms of environmental factors such as light, temperature, and food availability, as well as anthropogenic impact. In order to study the host specificity and potential influence of varying habitats on the sponge microbiota within a local area, four tropical reef sponges, Rhabdastrella globostellata, Callyspongia sp., Rhaphoxya sp., and Acanthella cavernosa, were collected from exposed shallow reef slopes and a deep reef drop-off. Based on 16S rRNA gene pyrosequencing profiles, beta diversity analyses revealed that each sponge species possessed a specific microbiota that was significantly different to those of the other species and exhibited attributes that are characteristic of high- and/or low-microbial-abundance sponges. These findings emphasize the influence of host identity on the associated microbiota. Dominant sponge- and seawater-associated bacterial phyla were Chloroflexi, Cyanobacteria, and Proteobacteria. Comparison of individual sponge taxa and seawater samples between shallow and deep reef sites revealed no significant variation in alpha diversity estimates, while differences in microbial beta diversity (variation in community composition) were significant for Callyspongia sp. sponges and seawater samples. Overall, the sponge-associated microbiota is significantly shaped by host identity across all samples, while the effect of habitat differentiation seems to be less predominant in tropical reef sponges. PMID:27114882

Global change and modern coral reefs: New opportunities to understand shallow-water carbonate depositional processes

NASA Astrophysics Data System (ADS)

Hallock, Pamela

2005-04-01

Human activities are impacting coral reefs physically, biologically, and chemically. Nutrification, sedimentation, chemical pollution, and overfishing are significant local threats that are occurring worldwide. Ozone depletion and global warming are triggering mass coral-bleaching events; corals under temperature stress lose the ability to synthesize protective sunscreens and become more sensitive to sunlight. Photo-oxidative stress also reduces fitness, rendering reef-building organisms more susceptible to emerging diseases. Increasing concentration of atmospheric CO 2 has already reduced CaCO 3 saturation in surface waters by more than 10%. Doubling of atmospheric CO 2 concentration over pre-industrial concentration in the 21st century may reduce carbonate production in tropical shallow marine environments by as much as 80%. As shallow-water reefs decline worldwide, opportunities abound for researchers to expand understanding of carbonate depositional systems. Coordinated studies of carbonate geochemistry with photozoan physiology and calcification, particularly in cool subtropical-transition zones between photozoan-reef and heterotrophic carbonate-ramp communities, will contribute to understanding of carbonate sedimentation under environmental change, both in the future and in the geologic record. Cyanobacteria are becoming increasingly prominent on declining reefs, as these microbes can tolerate strong solar radiation, higher temperatures, and abundant nutrients. The responses of reef-dwelling cyanobacteria to environmental parameters associated with global change are prime topics for further research, with both ecological and geological implications.

High-resolution physical and biogeochemical variability from a shallow back reef on Ofu, American Samoa: an end-member perspective

NASA Astrophysics Data System (ADS)

Koweek, David A.; Dunbar, Robert B.; Monismith, Stephen G.; Mucciarone, David A.; Woodson, C. Brock; Samuel, Lianna

2015-09-01

Shallow back reefs commonly experience greater thermal and biogeochemical variability owing to a combination of coral community metabolism, environmental forcing, flow regime, and water depth. We present results from a high-resolution (sub-hourly to sub-daily) hydrodynamic and biogeochemical study, along with a coupled long-term (several months) hydrodynamic study, conducted on the back reefs of Ofu, American Samoa. During the high-resolution study, mean temperature was 29.0 °C with maximum temperatures near 32 °C. Dissolved oxygen concentrations spanned 32-178 % saturation, and pHT spanned the range from 7.80 to 8.39 with diel ranges reaching 0.58 units. Empirical cumulative distribution functions reveal that pHT was between 8.0 and 8.2 during only 30 % of the observational period, with approximately even distribution of the remaining 70 % of the time between pHT values less than 8.0 and greater than 8.2. Thermal and biogeochemical variability in the back reefs is partially controlled by tidal modulation of wave-driven flow, which isolates the back reefs at low tide and brings offshore water into the back reefs at high tide. The ratio of net community calcification to net community production was 0.15 ± 0.01, indicating that metabolism on the back reef was dominated by primary production and respiration. Similar to other back reef systems, the back reefs of Ofu are carbon sinks during the daytime. Shallow back reefs like those in Ofu may provide insights for how coral communities respond to extreme temperatures and acidification and are deserving of continued attention.

Oyster reef restoration in the Northern Gulf of Mexico: effect of artificial substrate and sge on nekton and benthic macroinvertebrate assemblage use

USGS Publications Warehouse

Brown, Laura A.; Furlong, Jessica N.; Brown, Kenneth M.; LaPeyre, Megan K.

2013-01-01

In the northern Gulf of Mexico (GOM), reefs built by eastern oysters, Crassostrea virginica, provide critical habitat within shallow estuaries, and recent efforts have focused on restoring reefs to benefit nekton and benthic macroinvertebrates. We compared nekton and benthic macroinvertebrate assemblages at historic, newly created (<5years) and old (>6years) shell and rock substrate reefs. Using crab traps, gill-nets, otter trawls, cast nets, and benthic macroinvertebrate collectors, 20 shallow reefs (<5m) in the northern GOM were sampled throughout the summer of 2011. We compared nekton and benthic assemblage abundance, diversity and composition across reef types. Except for benthic macroinvertebrate abundance, which was significantly higher on old rock reefs as compared to historic reefs, all reefs were similar to historic reefs, suggesting created reefs provide similar support of nekton and benthic assemblages as historic reefs. To determine refuge value of oyster structure for benthic macroinvertebrates compared to bare bottom, we tested preferences of juvenile crabs across depth and refuge complexity in the presence and absence of adult blue crabs (Callinectes sapidus). Juveniles were more likely to use deep water with predators present only when provided oyster structure. Provision of structural material to support and sustain development of benthic and mobile reef communities may be the most important factor in determining reef value to these assemblages, with biophysical characteristics related to reef location influencing assemblage patterns in areas with structure; if so, appropriately locating created reefs is critical.

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship.

PubMed

Paxton, Avery B; Pickering, Emily A; Adler, Alyssa M; Taylor, J Christopher; Peterson, Charles H

2017-01-01

Structural complexity, a form of habitat heterogeneity, influences the structure and function of ecological communities, generally supporting increased species density, richness, and diversity. Recent research, however, suggests the most complex habitats may not harbor the highest density of individuals and number of species, especially in areas with elevated human influence. Understanding nuances in relationships between habitat heterogeneity and ecological communities is warranted to guide habitat-focused conservation and management efforts. We conducted fish and structural habitat surveys of thirty warm-temperate reefs on the southeastern US continental shelf to quantify how structural complexity influences fish communities. We found that intermediate complexity maximizes fish abundance on natural and artificial reefs, as well as species richness on natural reefs, challenging the current paradigm that abundance and other fish community metrics increase with increasing complexity. Naturally occurring rocky reefs of flat and complex morphologies supported equivalent abundance, biomass, species richness, and community composition of fishes. For flat and complex morphologies of rocky reefs to receive equal consideration as essential fish habitat (EFH), special attention should be given to detecting pavement type rocky reefs because their ephemeral nature makes them difficult to detect with typical seafloor mapping methods. Artificial reefs of intermediate complexity also maximized fish abundance, but human-made structures composed of low-lying concrete and metal ships differed in community types, with less complex, concrete structures supporting lower numbers of fishes classified largely as demersal species and metal ships protruding into the water column harboring higher numbers of fishes, including more pelagic species. Results of this study are essential to the process of evaluating habitat function provided by different types and shapes of reefs on the seafloor so that all EFH across a wide range of habitat complexity may be accurately identified and properly managed.

Great Barrier Reef, Queensland, Australia

NASA Technical Reports Server (NTRS)

1991-01-01

The Great Barrier Reef of Queensland, Australia extends for roughly 2,000 km along the northeast coast of Australia and is made up of thousands of individual reefs which define the edge of the Continental shelf. Swan Reef, the southern part of the reef system, is seen in this view. Water depths around the reefs are quite shallow (less than 1 to 36 meters) but only a few kilometers offshore, water depths can reach 1,000 meters.

Lightweight Exoatmospheric Projectile (LEAP) Test Program. Environment Assessment

DTIC Science & Technology

1991-07-01

and Man-Made Environment Kwajalein Atoll is a coral reef containing approximately 100 islands surrounding the largest lagoon in the Nlorld. The Atoll is...entirely from the remains of marine organisms such as reef corals , coralline algae, foramnifera, and others. Soils are coarse, grain size, alkaline...Kwajalein Atoll include ocean reefs , lagoon reefs , lagoon floor and sand flats, harbors, piers, quarries, and sea grass beds. Several reef species are

Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs

NASA Astrophysics Data System (ADS)

Perry, C. T.; Morgan, K. M.

2017-01-01

Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantified. Here we quantify the magnitude of changes that followed the ENSO-induced SST warming that affected the Indian Ocean region in mid-2016. Resultant coral bleaching caused an average 75% reduction in coral cover (present mean 6.2%). Most critically we report major declines in shallow fore-reef carbonate budgets, these shifting from strongly net positive (mean 5.92 G, where G = kg CaCO3 m-2 yr-1) to strongly net negative (mean -2.96 G). These changes have driven major reductions in reef growth potential, which have declined from an average 4.2 to -0.4 mm yr-1. Thus these shallow fore-reef habitats are now in a phase of net erosion. Based on past bleaching recovery trajectories, and predicted increases in bleaching frequency, we predict a prolonged period of suppressed budget and reef growth states. This will limit reef capacity to track IPCC projections of sea-level rise, thus limiting the natural breakwater capacity of these reefs and threatening reef island stability.

Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs.

PubMed

Perry, C T; Morgan, K M

2017-01-13

Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantified. Here we quantify the magnitude of changes that followed the ENSO-induced SST warming that affected the Indian Ocean region in mid-2016. Resultant coral bleaching caused an average 75% reduction in coral cover (present mean 6.2%). Most critically we report major declines in shallow fore-reef carbonate budgets, these shifting from strongly net positive (mean 5.92 G, where G = kg CaCO 3 m -2 yr -1 ) to strongly net negative (mean -2.96 G). These changes have driven major reductions in reef growth potential, which have declined from an average 4.2 to -0.4 mm yr -1 . Thus these shallow fore-reef habitats are now in a phase of net erosion. Based on past bleaching recovery trajectories, and predicted increases in bleaching frequency, we predict a prolonged period of suppressed budget and reef growth states. This will limit reef capacity to track IPCC projections of sea-level rise, thus limiting the natural breakwater capacity of these reefs and threatening reef island stability.

Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs

PubMed Central

Perry, C. T.; Morgan, K. M.

2017-01-01

Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantified. Here we quantify the magnitude of changes that followed the ENSO-induced SST warming that affected the Indian Ocean region in mid-2016. Resultant coral bleaching caused an average 75% reduction in coral cover (present mean 6.2%). Most critically we report major declines in shallow fore-reef carbonate budgets, these shifting from strongly net positive (mean 5.92 G, where G = kg CaCO3 m−2 yr−1) to strongly net negative (mean −2.96 G). These changes have driven major reductions in reef growth potential, which have declined from an average 4.2 to −0.4 mm yr−1. Thus these shallow fore-reef habitats are now in a phase of net erosion. Based on past bleaching recovery trajectories, and predicted increases in bleaching frequency, we predict a prolonged period of suppressed budget and reef growth states. This will limit reef capacity to track IPCC projections of sea-level rise, thus limiting the natural breakwater capacity of these reefs and threatening reef island stability. PMID:28084450

Habitat Specialization in Tropical Continental Shelf Demersal Fish Assemblages

PubMed Central

Fitzpatrick, Ben M.; Harvey, Euan S.; Heyward, Andrew J.; Twiggs, Emily J.; Colquhoun, Jamie

2012-01-01

The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1–10 m depth), down the fore reef slope to the reef base (10–30 m depth) then across the adjacent continental shelf (30–110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected habitats through which fish can migrate. PMID:22761852

Caribbean mesophotic coral ecosystems are unlikely climate change refugia.

PubMed

Smith, Tyler B; Gyory, Joanna; Brandt, Marilyn E; Miller, William J; Jossart, Jonathan; Nemeth, Richard S

2016-08-01

Deeper coral reefs experience reduced temperatures and light and are often shielded from localized anthropogenic stressors such as pollution and fishing. The deep reef refugia hypothesis posits that light-dependent stony coral species at deeper depths are buffered from thermal stress and will avoid bleaching-related mass mortalities caused by increasing sea surface temperatures under climate change. This hypothesis has not been tested because data collection on deeper coral reefs is difficult. Here we show that deeper (mesophotic) reefs, 30-75 m depth, in the Caribbean are not refugia because they have lower bleaching threshold temperatures than shallow reefs. Over two thermal stress events, mesophotic reef bleaching was driven by a bleaching threshold that declines 0.26 °C every +10 m depth. Thus, the main premise of the deep reef refugia hypothesis that cooler environments are protective is incorrect; any increase in temperatures above the local mean warmest conditions can lead to thermal stress and bleaching. Thus, relatively cooler temperatures can no longer be considered a de facto refugium for corals and it is likely that many deeper coral reefs are as vulnerable to climate change as shallow water reefs. © 2015 John Wiley & Sons Ltd.

Water level effects on breaking wave setup for Pacific Island fringing reefs

NASA Astrophysics Data System (ADS)

Becker, J. M.; Merrifield, M. A.; Ford, M.

2014-02-01

The effects of water level variations on breaking wave setup over fringing reefs are assessed using field measurements obtained at three study sites in the Republic of the Marshall Islands and the Mariana Islands in the western tropical Pacific Ocean. At each site, reef flat setup varies over the tidal range with weaker setup at high tide and stronger setup at low tide for a given incident wave height. The observed water level dependence is interpreted in the context of radiation stress gradients specified by an idealized point break model generalized for nonnormally incident waves. The tidally varying setup is due in part to depth-limited wave heights on the reef flat, as anticipated from previous reef studies, but also to tidally dependent breaking on the reef face. The tidal dependence of the breaking is interpreted in the context of the point break model in terms of a tidally varying wave height to water depth ratio at breaking. Implications for predictions of wave-driven setup at reef-fringed island shorelines are discussed.

Observations of infragravity motions for reef fringed islands and atolls

NASA Astrophysics Data System (ADS)

Becker, J. M.; Merrifield, M. A.; Ford, M.

2012-12-01

The frequency of flooding events that affect low lying islands and atolls in the Pacific is expected to increase under current sea level rise projections. Infragravity (IG) motions, with periods ranging from approximately 25 to 400 seconds, are an important component of wave driven flooding events for reef fringed islands and atolls. The IG variability during wave events is analyzed and interpreted dynamically from pressure and current observations at four cross-reef transects in the North Pacific Ocean that include sites in the Republic of the Marshall Islands and Guam. The IG motions are shown to depend upon the spectral properties of the incident wave forcing and reef flat characteristics that include reef flat length (ranging from 100m to 450m at the four sites) and total water level due to setup and tides. A small inundation event at one of the sites is shown to occur due to large shoreline infragravity energy.

Along-Track Reef Imaging System (ATRIS)

USGS Publications Warehouse

Brock, John; Zawada, Dave

2006-01-01

"Along-Track Reef Imaging System (ATRIS)" describes the U.S. Geological Survey's Along-Track Reef Imaging System, a boat-based sensor package for rapidly mapping shallow water benthic environments. ATRIS acquires high resolution, color digital images that are accurately geo-located in real-time.

Repeated invasions into the twilight zone: evolutionary origins of a novel assemblage of fishes from deep Caribbean reefs.

PubMed

Tornabene, Luke; Van Tassell, James L; Robertson, D Ross; Baldwin, Carole C

2016-08-01

Mesophotic and deeper reefs of the tropics are poorly known and underexplored ecosystems worldwide. Collectively referred to as the 'twilight zone', depths below ~30-50 m are home to many species of reef fishes that are absent from shallower depths, including many undescribed and endemic species. We currently lack even a basic understanding of the diversity and evolutionary origins of fishes on tropical mesophotic reefs. Recent submersible collections in the Caribbean have provided new specimens that are enabling phylogenetic reconstructions that incorporate deep-reef representatives of tropical fish genera. Here, we investigate evolutionary depth transitions in the family Gobiidae (gobies), the most diverse group of tropical marine fishes. Using divergence-time estimation coupled with stochastic character mapping to infer the timing of shallow-to-deep habitat transitions in gobies, we demonstrate at least four transitions from shallow to mesophotic depths. Habitat transitions occurred in two broad time periods (Miocene, Pliocene-Pleistocene), and may have been linked to the availability of underutilized niches, as well as the evolution of morphological/behavioural adaptations for life on deep reefs. Further, our analysis shows that at least three evolutionary lineages that invaded deep habitats subsequently underwent speciation, reflecting another unique mode of radiation within the Gobiidae. Lastly, we synthesize depth distributions for 95 species of Caribbean gobies, which reveal major bathymetric faunal breaks at the boundary between euphotic and mesophotic reefs. Ultimately, our study is the first rigorous investigation into the origin of Caribbean deep-reef fishes and provides a framework for future studies that utilize rare, deep-reef specimens. © 2016 John Wiley & Sons Ltd.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cuffey, R.J.; Pachut, J.F.

The Holocene reef-building coral Favia pallida was sampled at 4.5 m depth increments (to 40 m) from two reefs on Enewetak Atoll to examine intraspecific environmental effects. An exposed outer reef was massive and wall-like, whereas a sheltered lagoonal reef grew as a slender pinnacle. Corallite diameter and growth rate, two attributes retrievable in fossil corals, were measured with data partitioned into shallow (<20 m), intermediate (20 to 29 m), and deep-water (>29 m) subsets. Highly significant differences between depth zone populations were found for both corallite diameters and growth rates in analyses of individual and combined reef data sets.more » Canonical variates analyses (CVA) separated populations from depth zones along single, highly significant, functions. Centroids and 95% confidence intervals, calculated from CVA scores of colonies in each population, are widely separated for the lagoon reef and combined data sets. Conversely, populations from shallow and intermediate depths on the outer reef display overlapping confidence bars indicative of more gradational morphologic changes. When CV's were used to classify specimens to groups, misassignments of intermediate depth specimens to shallow or deep-water populations underscored the gradational nature of the environment. Completely intergrading populations of Favia pallida collected from different depths can be morphologically separated into statistically distinct groupings. A stratigraphic succession of such morphotypes might be interpreted as abruptly appearing separate species if sampling were not as uniform, systematic, and detailed as was possible on modern reefs. Analyses of evolutionary patterns must carefully assess potential effects of clinal variation if past evolutionary patterns are to be interpreted correctly.« less

A Herbivore Knows Its Patch: Luderick, Girella tricuspidata, Exhibit Strong Site Fidelity on Shallow Subtidal Reefs in a Temperate Marine Park

PubMed Central

Ferguson, Adrian M.; Harvey, Euan S.; Taylor, Matthew D.; Knott, Nathan A.

2013-01-01

Understanding movement patterns, habitat use and behaviour of fish is critical to determining how targeted species may respond to protection provided by “no-take” sanctuary zones within marine parks. We assessed the fine and broad scale movement patterns of an exploited herbivore, luderick (Girella tricuspidata), using acoustic telemetry to evaluate how this species may respond to protection within Jervis Bay (New South Wales, Australia). We surgically implanted fourteen fish with acoustic transmitters and actively and passively tracked individuals to determine fine and broad scale movement patterns respectively. Eight fish were actively tracked for 24 h d¯1 for 6 d (May 2011), and then intermittently over the following 30 d. Six fish were passively tracked from December 2011 to March 2012, using a fixed array of receivers deployed across rocky reefs around the perimeter of the bay. Luderick exhibited strong site fidelity on shallow subtidal reefs, tending to remain on or return consistently to the reef where they were caught and released. All eight fish actively tracked used core areas solely on their release reef, with the exception of one fish that used multiple core areas, and four of the six fish passively tracked spent between 75 to 96% of days on release reefs over the entire tracking period. Luderick did move frequently to adjacent reefs, and occasionally to more distant reefs, however consistently returned to their release reef. Luderick also exhibited predictable patterns in movement between spatially distinct daytime and night-time core use areas. Night-time core use areas were generally located in sheltered areas behind the edge of reefs. Overall, our data indicate luderick exhibit strong site fidelity on shallow subtidal reefs in Jervis Bay and suggests that this important herbivore may be likely to show a positive response to protection within the marine park. PMID:23741515

A herbivore knows its patch: luderick, Girella tricuspidata, exhibit strong site fidelity on shallow subtidal reefs in a temperate marine park.

PubMed

Ferguson, Adrian M; Harvey, Euan S; Taylor, Matthew D; Knott, Nathan A

2013-01-01

Understanding movement patterns, habitat use and behaviour of fish is critical to determining how targeted species may respond to protection provided by "no-take" sanctuary zones within marine parks. We assessed the fine and broad scale movement patterns of an exploited herbivore, luderick (Girella tricuspidata), using acoustic telemetry to evaluate how this species may respond to protection within Jervis Bay (New South Wales, Australia). We surgically implanted fourteen fish with acoustic transmitters and actively and passively tracked individuals to determine fine and broad scale movement patterns respectively. Eight fish were actively tracked for 24 h d¯(1) for 6 d (May 2011), and then intermittently over the following 30 d. Six fish were passively tracked from December 2011 to March 2012, using a fixed array of receivers deployed across rocky reefs around the perimeter of the bay. Luderick exhibited strong site fidelity on shallow subtidal reefs, tending to remain on or return consistently to the reef where they were caught and released. All eight fish actively tracked used core areas solely on their release reef, with the exception of one fish that used multiple core areas, and four of the six fish passively tracked spent between 75 to 96% of days on release reefs over the entire tracking period. Luderick did move frequently to adjacent reefs, and occasionally to more distant reefs, however consistently returned to their release reef. Luderick also exhibited predictable patterns in movement between spatially distinct daytime and night-time core use areas. Night-time core use areas were generally located in sheltered areas behind the edge of reefs. Overall, our data indicate luderick exhibit strong site fidelity on shallow subtidal reefs in Jervis Bay and suggests that this important herbivore may be likely to show a positive response to protection within the marine park.

The relative contribution of processes driving variability in flow, shear, and turbidity over a fringing coral reef: West Maui, Hawaii

USGS Publications Warehouse

Storlazzi, C.D.; Jaffe, B.E.

2008-01-01

High-frequency measurements of waves, currents and water column properties were made on a fringing coral reef off northwest Maui, Hawaii, for 15 months between 2001 and 2003 to aid in understanding the processes governing flow and turbidity over a range of time scales and their contributions to annual budgets. The summer months were characterized by consistent trade winds and small waves, and under these conditions high-frequency internal bores were commonly observed, there was little net flow or turbidity over the fore reef, and over the reef flat net flow was downwind and turbidity was high. When the trade winds waned or the wind direction deviated from the dominant trade wind orientation, strong alongshore flows occurred into the typically dominant wind direction and lower turbidity was observed across the reef. During the winter, when large storm waves impacted the study area, strong offshore flows and high turbidity occurred on the reef flat and over the fore reef. Over the course of a year, trade wind conditions resulted in the greatest net transport of turbid water due to relatively strong currents, moderate overall turbidity, and their frequent occurrence. Throughout the period of study, near-surface current directions over the fore reef varied on average by more than 41?? from those near the seafloor, and the orientation of the currents over the reef flat differed on average by more than 65?? from those observed over the fore reef. This shear occurred over relatively short vertical (order of meters) and horizontal (order of hundreds of meters) scales, causing material distributed throughout the water column, including the particles in suspension causing the turbidity (e.g. sediment or larvae) and/or dissolved nutrients and contaminants, to be transported in different directions under constant oceanographic and meteorologic forcing.

Geographic differences in vertical connectivity in the Caribbean coral Montastraea cavernosa despite high levels of horizontal connectivity at shallow depths.

PubMed

Serrano, X; Baums, I B; O'Reilly, K; Smith, T B; Jones, R J; Shearer, T L; Nunes, F L D; Baker, A C

2014-09-01

The deep reef refugia hypothesis proposes that deep reefs can act as local recruitment sources for shallow reefs following disturbance. To test this hypothesis, nine polymorphic DNA microsatellite loci were developed and used to assess vertical connectivity in 583 coral colonies of the Caribbean depth-generalist coral Montastraea cavernosa. Samples were collected from three depth zones (≤10, 15-20 and ≥25 m) at sites in Florida (within the Upper Keys, Lower Keys and Dry Tortugas), Bermuda, and the U.S. Virgin Islands. Migration rates were estimated to determine the probability of coral larval migration from shallow to deep and from deep to shallow. Finally, algal symbiont (Symbiodinium spp.) diversity and distribution were assessed in a subset of corals to test whether symbiont depth zonation might indicate limited vertical connectivity. Overall, analyses revealed significant genetic differentiation by depth in Florida, but not in Bermuda or the U.S. Virgin Islands, despite high levels of horizontal connectivity between these geographic locations at shallow depths. Within Florida, greater vertical connectivity was observed in the Dry Tortugas compared to the Lower or Upper Keys. However, at all sites, and regardless of the extent of vertical connectivity, migration occurred asymmetrically, with greater likelihood of migration from shallow to intermediate/deep habitats. Finally, most colonies hosted a single Symbiodinium type (C3), ruling out symbiont depth zonation of the dominant symbiont type as a structuring factor. Together, these findings suggest that the potential for shallow reefs to recover from deep-water refugia in M. cavernosa is location-specific, varying among and within geographic locations likely as a consequence of local hydrology. © 2014 John Wiley & Sons Ltd.

Reef corals of Johnston Atoll: one of the world's most isolated reefs

NASA Astrophysics Data System (ADS)

Maragos, James E.; Jokiel, Paul L.

1986-01-01

Johnston Atoll lies 800 km southwest of the nearest reefs of Hawaii and over 1,500 km from other shallow reefs to the south and west. Only 33 species and 16 genera and subgenera of shallow water stony corals have been reported from the atoll. Endemic species are absent despite Johnston's great age and favorable environment. With few exceptions, only species with broad geographic distribution are represented. Factors contributing to the low number of species are remoteness, the atoll's small size, lack of favorable currents to transport larvae from the southwest Pacific, lack of reef “stepping stones” in the region since the Cretaceous, possible defaunation during eustatic sea-level rise and fall, and possible drowning from tectonic subsidence or tilting. The species list shows strongest affinity with that of Hawaii, but some unexpected discontinuities occur. Despite low species diversity, coral coverage is extremely high in most environments.

Plate tectonics drive tropical reef biodiversity dynamics

PubMed Central

Leprieur, Fabien; Descombes, Patrice; Gaboriau, Théo; Cowman, Peter F.; Parravicini, Valeriano; Kulbicki, Michel; Melián, Carlos J.; de Santana, Charles N.; Heine, Christian; Mouillot, David; Bellwood, David R.; Pellissier, Loïc

2016-01-01

The Cretaceous breakup of Gondwana strongly modified the global distribution of shallow tropical seas reshaping the geographic configuration of marine basins. However, the links between tropical reef availability, plate tectonic processes and marine biodiversity distribution patterns are still unknown. Here, we show that a spatial diversification model constrained by absolute plate motions for the past 140 million years predicts the emergence and movement of diversity hotspots on tropical reefs. The spatial dynamics of tropical reefs explains marine fauna diversification in the Tethyan Ocean during the Cretaceous and early Cenozoic, and identifies an eastward movement of ancestral marine lineages towards the Indo-Australian Archipelago in the Miocene. A mechanistic model based only on habitat-driven diversification and dispersal yields realistic predictions of current biodiversity patterns for both corals and fishes. As in terrestrial systems, we demonstrate that plate tectonics played a major role in driving tropical marine shallow reef biodiversity dynamics. PMID:27151103

Plate tectonics drive tropical reef biodiversity dynamics.

PubMed

Leprieur, Fabien; Descombes, Patrice; Gaboriau, Théo; Cowman, Peter F; Parravicini, Valeriano; Kulbicki, Michel; Melián, Carlos J; de Santana, Charles N; Heine, Christian; Mouillot, David; Bellwood, David R; Pellissier, Loïc

2016-05-06

The Cretaceous breakup of Gondwana strongly modified the global distribution of shallow tropical seas reshaping the geographic configuration of marine basins. However, the links between tropical reef availability, plate tectonic processes and marine biodiversity distribution patterns are still unknown. Here, we show that a spatial diversification model constrained by absolute plate motions for the past 140 million years predicts the emergence and movement of diversity hotspots on tropical reefs. The spatial dynamics of tropical reefs explains marine fauna diversification in the Tethyan Ocean during the Cretaceous and early Cenozoic, and identifies an eastward movement of ancestral marine lineages towards the Indo-Australian Archipelago in the Miocene. A mechanistic model based only on habitat-driven diversification and dispersal yields realistic predictions of current biodiversity patterns for both corals and fishes. As in terrestrial systems, we demonstrate that plate tectonics played a major role in driving tropical marine shallow reef biodiversity dynamics.

Earth Observations taken by Expedition 26 crewmember

NASA Image and Video Library

2010-11-27

ISS026-E-005121 (27 Nov. 2010) --- Tidal flats and channels on Long Island, Bahamas are featured in this image photographed by an Expedition 26 crew member on the International Space Station. The islands of the Bahamas in the Caribbean Sea are situated on large depositional platforms (the Great and Little Bahama Banks) composed mainly of carbonate sediments ringed by fringing reefs – the islands themselves are only the parts of the platform currently exposed above sea level. The sediments are formed mostly from the skeletal remains of organisms settling to the sea floor; over geologic time, these sediments will consolidate to form carbonate sedimentary rocks such as limestone. This detailed photograph provides a view of tidal flats and tidal channels near Sandy Cay on the western side of Long Island, located along the eastern margin of the Great Bahama Bank. The continually exposed parts of the island have a brown coloration in the image, a result of soil formation and vegetation growth (left). To the north of Sandy Cay an off-white tidal flat composed of carbonate sediments is visible; light blue-green regions indicate shallow water on the tidal flat. Tidal flow of seawater is concentrated through gaps in the anchored land surface, leading to formation of relatively deep tidal channels that cut into the sediments of the tidal flat. The channels, and areas to the south of the island, have a vivid blue coloration that provides a clear indication of deeper water (center).

Great Barrier Reef, Queensland, Australia

NASA Image and Video Library

1991-09-18

STS048-151-250 (12-18 Sept. 1991) --- The Great Barrier Reef extends for roughly 2,000 kilometers along the northeast coast of Australia. The great Barrier Reef is made up of thousands of individual reefs which define the edge of the continental shelf. The southern part of the feature, called Swain Reef, is seen here. Water depths around the reefs are quite shallow (less than 1 meter to about 36 meters in depth), but only a few kilometers offshore, water depths are roughly 1,000 meters.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mazzullo, S.J.; Anderson-Underwood, K.E.; Burke, C.D.

Coral patch reefs are major components of Holocene platform carbonate facies systems in tropical and subtropical areas. The biotic composition, growth and relationship to sea level history, and diagenetic attributes of a representative Holocene patch reef ([open quotes]Elmer Reef[close quotes]) in the Mexico Rocks complex in northern Belize are described and compared to those of Holocene patch reefs in southern Belize. Elmer Reef has accumulated in shallow (2.5 m) water over the last 420 yr, under static sea level conditions. Rate of vertical construction is 0.3-0.5 m/100 yr, comparable to that of patch reefs in southern Belize. A pronounced coralmore » zonation exists across Elmer Reef, with Monastrea annularis dominating on its crest and Acropora cervicornis occurring on its windward and leeward flanks. The dominance of Montastrea on Elmer Reef is unlike that of patch reefs in southern Belize, in which this coral assumes only a subordinate role in reef growth relative to that of Acropora palmata. Elmer Reef locally is extensively biodegraded and marine, fibrous aragonite and some bladed high-magnesium calcite cements occur throughout the reef section, partially occluding corallites and interparticle pores in associated sands. Patch reefs in southern Belize have developed as catch-up and keep-up reefs in a transgressive setting. In contrast, the dominant mode of growth of Elmer Reef, and perhaps other patch reefs in Mexico Rocks, appears to be one of lateral rather than vertical accretion. This style of growth occurs in a static sea level setting where there is only limited accommodation space because of the shallowness of the water, and such reefs are referred to as [open quotes]expansion reefs[close quotes]. 39 refs., 8 figs., 2 tabs.« less

Response of shallow-water carbonates and reef systems to the Toarcian Ocean Anoxic Event (183 Ma) on the Dinaric Carbonate Platform (Slovenia)

NASA Astrophysics Data System (ADS)

Martindale, R. C.; Kosir, A.; Schaller, M. F.

2015-12-01

With rising concerns regarding the persistence of coral reefs through the 21st century, there is a crucial need to understand how these ecosystems will respond to future environmental deterioration (e.g. ocean warming, acidification, and decreased oxygenation). Several ancient events have been identified as good analogues for modern ecological changes, however, most of these correspond to mass extinction events. By studying carbon cycle perturbations that caused more minor ecosystem collapse, such as the Toarcian Ocean Anoxic Event (T-OAE), the key physiological, ecological, and environmental features that correlate with species and community survival can be assessed. The Dinaric Carbonate Platform, which extends from northeastern Italy to northwestern Albania, is one of the few platforms in Europe that captures an almost continuous shallow-water record of Pliensbachian and Toarcian strata. Specifically, this comparatively poorly studied platform captures the T-OAE in shallow-water carbonates. One such outcrop on the Trnovski Gozd karst plateau in western Slovenia contains both Pleinsbachian lithiotid (bivalve) biostromes and coral bioherms (i.e. coral reefs). The occurrence of both lithiotid and coral buildups in one section is extremely rare and provides the opportunity to study the response of both communities, as well as the carbonate system as a whole, to the T-OAE. This research focuses on the lithology and chemostratigraphy from this locality, particularly identifying the T-OAE horizon more precisely. Additionally, (micro)facies analyses and paleontological analyses of the reefs themselves will be presented. These data will establish the paleoenvironmental conditions that favored reef growth in the Pliensbachian, as well as what conditions changed at the stage boundary and T-OAE to cause the collapse of the shallow-water carbonates and reef systems.

Using light-dependent scleractinia to define the upper boundary of mesophotic coral ecosystems on the reefs of Utila, Honduras.

PubMed

Laverick, Jack H; Andradi-Brown, Dominic A; Rogers, Alex D

2017-01-01

Shallow water zooxanthellate coral reefs grade into ecologically distinct mesophotic coral ecosystems (MCEs) deeper in the euphotic zone. MCEs are widely considered to start at an absolute depth limit of 30m deep, possibly failing to recognise that these are distinct ecological communities that may shift shallower or deeper depending on local environmental conditions. This study aimed to explore whether MCEs represent distinct biological communities, the upper boundary of which can be defined and whether the depth at which they occur may vary above or below 30m. Mixed-gas diving and closed-circuit rebreathers were used to quantitatively survey benthic communities across shallow to mesophotic reef gradients around the island of Utila, Honduras. Depths of up to 85m were sampled, covering the vertical range of the zooxanthellate corals around Utila. We investigate vertical reef zonation using a variety of ecological metrics to identify community shifts with depth, and the appropriateness of different metrics to define the upper MCE boundary. Patterns observed in scleractinian community composition varied between ordination analyses and approaches utilising biodiversity indices. Indices and richness approaches revealed vertical community transition was a gradation. Ordination approaches suggest the possibility of recognising two scleractinian assemblages. We could detect a mesophotic and shallow community while illustrating that belief in a static depth limit is biologically unjustified. The switch between these two communities occurred across bathymetric gradients as small as 10m and as large as 50m in depth. The difference between communities appears to be a loss of shallow specialists and increase in depth-generalist taxa. Therefore, it may be possible to define MCEs by a loss of shallow specialist species. To support a biological definition of mesophotic reefs, we advocate this analytical framework should be applied around the Caribbean and extended into other ocean basins where MCEs are present.

Growth rates of Porites astreoides and Orbicella franksi in mesophotic habitats surrounding St. Thomas, US Virgin Islands

NASA Astrophysics Data System (ADS)

Groves, Sarah H.; Holstein, Daniel M.; Enochs, Ian C.; Kolodzeij, Graham; Manzello, Derek P.; Brandt, Marilyn E.; Smith, Tyler B.

2018-06-01

Mesophotic coral ecosystems (MCEs) are deep (> 30 m), light-dependent communities that are abundant in many parts of the global ocean. MCEs are potentially connected to shallow reefs via larval exchange and may act as refuges for reef organisms. However, MCE community level recovery after disturbance, and thus, community resilience, are poorly understood components of their capacity as refuges. To assess the potential for disturbance and growth to drive community structure on MCEs with differential biophysical conditions and coral communities, we collected colonies of Orbicella franksi and Porites astreoides and used computerized tomography to quantify calcification. The divergence of coral growth rates in MCEs with different environmental conditions may be species specific; habitat-forming O. franksi have slow and consistent growth rates of 0.2 cm yr-1 below 30 m, regardless of mesophotic habitat, compared to 1.0 cm yr-1 in shallow-water habitats. Slow skeletal growth rates in MCEs suggest that rates of recovery from disturbance will likely also be slow. Localized buffering of MCEs from the stressors affecting shallow reefs is therefore crucial to the long-term capacity of these sites to serve as refugia, given that skeletal extension and recovery from disturbance in MCEs will be significantly slower than on shallow reefs.

Correlation of Coral Bleaching Events and Remotely-Sensed Sea Surface Temperatures

DTIC Science & Technology

1994-05-19

water column. Diving on the reefs, they found significant tracts of bleached corals, zoanthids , gorgonians, and sea anemones (Bunckley-Williams and... zoanthids between May and July 1988 on shallow lagoonal reefs and rim margin reefs was the first indication of any sort of bleaching event at Bermuda

A Bayesian-based system to assess wave-driven flooding hazards on coral reef-lined coasts

USGS Publications Warehouse

Pearson, S. G.; Storlazzi, Curt; van Dongeren, A. R.; Tissier, M. F. S.; Reniers, A. J. H. M.

2017-01-01

Many low-elevation, coral reef-lined, tropical coasts are vulnerable to the effects of climate change, sea level rise, and wave-induced flooding. The considerable morphological diversity of these coasts and the variability of the hydrodynamic forcing that they are exposed to make predicting wave-induced flooding a challenge. A process-based wave-resolving hydrodynamic model (XBeach Non-Hydrostatic, “XBNH”) was used to create a large synthetic database for use in a “Bayesian Estimator for Wave Attack in Reef Environments” (BEWARE), relating incident hydrodynamics and coral reef geomorphology to coastal flooding hazards on reef-lined coasts. Building on previous work, BEWARE improves system understanding of reef hydrodynamics by examining the intrinsic reef and extrinsic forcing factors controlling runup and flooding on reef-lined coasts. The Bayesian estimator has high predictive skill for the XBNH model outputs that are flooding indicators, and was validated for a number of available field cases. It was found that, in order to accurately predict flooding hazards, water depth over the reef flat, incident wave conditions, and reef flat width are the most essential factors, whereas other factors such as beach slope and bed friction due to the presence or absence of corals are less important. BEWARE is a potentially powerful tool for use in early warning systems or risk assessment studies, and can be used to make projections about how wave-induced flooding on coral reef-lined coasts may change due to climate change.

Catastrophic impact of typhoon waves on coral communities in the Ryukyu Islands under global warming

NASA Astrophysics Data System (ADS)

Hongo, Chuki; Kawamata, Hideki; Goto, Kazuhisa

2012-06-01

Typhoon-generated storm waves generally cause mechanical damage to coral communities on present-day reefs, and the magnitude and extent of damage is predicted to increase in the near future as a result of global warming. Therefore, a comprehensive understanding of potential future scenarios of reef ecosystems is of prime interest. This study assesses the current status of coral communities on Ibaruma reef, Ryukyu Islands, on the basis of field observations, engineering and fluid dynamic models, and calculations of wave motion, and predicts the potential effects of a super-extreme typhoon (incident wave height,H = 20 m; wave period, T = 20 s) on the reef. On the present-day reef, massive corals occur in shallow lagoons and tabular corals occur from the reef crest to the reef slope. The observed distribution of corals, which is frequently attacked by moderate (H = 10 m, T = 10 s) and extreme (H = 10 m, T = 15 s) typhoons, is consistent with the predictions of engineering models. Moreover, this study indicates that if a super-extreme typhoon attacks the reef in the near future, massive corals will survive in the shallow lagoons but tabular corals on the reef crest and reef slope will be severely impacted. The findings imply that super-extreme typhoons will cause a loss of species diversity, as the tabular corals are important reef builders and are critical to the maintenance of reef ecosystems. Consequently, reef restoration is a key approach to maintaining reef ecosystems in the wake of super-extreme typhoons.

Sponge distribution across Davies Reef, Great Barrier Reef, relative to location, depth, and water movement

NASA Astrophysics Data System (ADS)

Wilkinson, Clive R.; Evans, Elizabeth

1989-06-01

Sponge populations were surveyed at different depths in three zones of Davies Reef, a large platform reef of the central Great Barrier Reef. Depth is the major discriminatory factor as few sponges are found within the first 10 m depth and maximal populations occur between 15 m and 30 m on fore-reef, lagoon and back-reef slopes. Reef location is another major factor, with the lagoon containing a significantly different sponge population to either the fore-reef or the back-reef slopes. Physical factors are considered to be the major influences behind these patterns. Physical turbulence is strongest within the first 10 m and apparently limits sponge growth within these shallow zones. Insufficient photosynthetic radiation limits the growth of the sponge population below 30 m depth as many of the species are phototrophic with a dependence on cyanobacterial symbionts for nutrition. Sponge populations on the outer (fore- and back-) reef slopes are comparable with each other but different from those on lagoon slopes where currents are reduced and fine sediment loads are higher. The largest populations occur on the back-reef slope where currents are stronger and there are possibly higher concentrations of organic nutrients originating from the more productive shallow parts of the reef. While there are correlations between sponge populations and environmental parameters, data are insufficient to enable more definitive conclusions to be drawn. Most sponge species are distributed widely over the reef, however, some are restricted to a few habitats and, hence, may be used to characterize those habitats.

The application of PIT tags to measure transport of detrital coral fragments on a fringing reef: Majuro Atoll, Marshall Islands

NASA Astrophysics Data System (ADS)

Ford, Murray R.

2014-06-01

Passive integrated transponder (PIT) tags are a radio-frequency identification device widely used as a machine-readable identification tool in fisheries research. PIT tags have also been employed, to a lesser extent, to track the movement of gravel-sized clasts within fluvial and coastal systems. In this study, PIT tags were inserted into detrital coral fragments and used to establish source-sink transport pathways on a fringing reef on Majuro Atoll in the Marshall Islands. Results suggest the transport of gravel-sized material on the inter-tidal reef flat is exclusively across-reef towards the lagoon. Considerable variation in the distance travelled by fragments was observed. Fragments were largely intact and visually recognisable after almost 5 months on the reef flat. However, the branches of some recovered fragments had broken off and corallite abrasion was observed in recovered fragments. This study indicates that PIT tags are an inexpensive and powerful new addition to the suite of sediment transport and taphonomic tools for researchers working within coral reef systems.

Mechanisms of wave‐driven water level variability on reef‐fringed coastlines

USGS Publications Warehouse

Buckley, Mark L.; Lowe, Ryan J.; Hansen, Jeff E; van Dongeren, Ap R.; Storlazzi, Curt

2018-01-01

Wave‐driven water level variability (and runup at the shoreline) is a significant cause of coastal flooding induced by storms. Wave runup is challenging to predict, particularly along tropical coral reef‐fringed coastlines due to the steep bathymetric profiles and large bottom roughness generated by reef organisms, which can violate assumptions in conventional models applied to open sandy coastlines. To investigate the mechanisms of wave‐driven water level variability on a reef‐fringed coastline, we performed a set of laboratory flume experiments on an along‐shore uniform bathymetric profile with and without bottom roughness. Wave setup and waves at frequencies lower than the incident sea‐swell forcing (infragravity waves) were found to be the dominant components of runup. These infragravity waves were positively correlated with offshore wave groups, signifying they were generated in the surf zone by the oscillation of the breakpoint. On the reef flat and at the shoreline, the low‐frequency waves formed a standing wave pattern with energy concentrated at the natural frequencies of the reef flat, indicating resonant amplification. Roughness elements used in the flume to mimic large reef bottom roughness reduced low frequency motions on the reef flat and reduced wave run up by 30% on average, compared to the runs over a smooth bed. These results provide insight into sea‐swell and infragravity wave transformation and wave setup dynamics on steep‐sloped coastlines, and the effect that future losses of reef bottom roughness may have on coastal flooding along reef‐fringed coasts.

[Ichthyofauna associated to a shallow reef in Morrocoy National Park, Venezuela].

PubMed

López-Ordaz, A; Rodríguez-Quintal, J G

2010-10-01

Ichthyofauna associated to a shallow reef in Morrocoy National Park, Venezuela. Morrocoy National Park is one of the most studied coastal marine environments in Venezuela; however, efforts have been concentrated in south zone. In this study we select a shallow reef located in the north zone, characterized the benthic community and the structure of the fish community was studied using visual censuses. The benthic community was dominated by dead coral covered by algae (31%) and the live coral coverage was 12%. A total of 65 fish species belonging to 24 families were recorded, being Pomacentridae (43%), Scaridae (19%) and Haemulidae (15%) the most abundant families. Significant differences in the fish species abundances were found along the depth gradient, which could be related to the habitat characteristics, nevertheless herbivorous species dominance was evident at all depth strata. There seems to be a trend towards greater richness and density in the south zone reefs, and these differences may be related to the presence of extensive seagrass meadows and mangrove forests in that area or to differences in the recruitment patterns.

Mapping islands, reefs and shoals in the oceans surrounding Australia

NASA Technical Reports Server (NTRS)

Turner, L. G. (Principal Investigator)

1975-01-01

The author has identified the following significant results. Comparisons of the imagery with aerial photography of areas of reefs and island and with 1:250,000 maps of coastlines indicate that the MSS imagery depicts detail to an extent which is satisfactory for 1:250,000 mapping. As the imagery does not have some of the disadvantages of aerial photography, the former should be valuable for mapping reefs, islands, and shoals. The water discoloration problem is significant as the discolored water appears to occur near shallow depths, so that confusion could arise through the misinterpretation of discolored water, when it exists, as shallow water.

Are mesophotic coral ecosystems distinct communities and can they serve as refugia for shallow reefs?

NASA Astrophysics Data System (ADS)

Semmler, Robert F.; Hoot, Whitney C.; Reaka, Marjorie L.

2017-06-01

We analyzed an extensive dataset of over 9000 benthic and suprabenthic species found throughout the Gulf of Mexico (GoMx) to assess whether mesophotic coral ecosystems represent distinct assemblages and evaluate their potential to serve as refugia for shallow reef communities. We assessed community structure of the overall benthic community from 0 to 300 m via non-metric multidimensional scaling (NMDS) of species presence across depth bands. We used the Jaccard index of similarity to calculate the proportion of shared species between adjacent depth bands, measure species turnover with depth, and assess taxonomic overlap between shallow reefs versus progressively deeper depth bands. NMDS ordinations showed that the traditionally defined mesophotic range (30-150 m) as a whole is not a distinct community. In contrast, taxonomically distinct communities, determined by hierarchical clustering, were found at 0-70, 60-120, 110-200, and 190-300 m. Clustering highlighted an important separation in the benthic community at 60 m, which was especially important for actinopterygian fishes. Species turnover between adjacent depths decreased with depth for all taxa combined and individual taxa, with peaks at 60, 90-120, and 190-200 m. Fishes showed lower turnover from shallow to upper mesophotic depths (0-50 m) than all taxa combined, a substantial peak at 60 m, followed by a precipitous and continued decline in turnover thereafter. Taxonomic overlap between shallow (0-20 m) and progressively deeper zones declined steadily with depth in all taxa and individual taxa, suggesting that mid- and lower mesophotic habitats have less (but not inconsequential) potential to serve as refugia (60-150 m, 15-25% overlap with shallow habitats) than upper mesophotic zones (30-60 m, 30-45% overlap with shallow habitats) for all taxa combined. We conclude that the traditional mesophotic zone is home to three ecological communities in the GoMx, one that is confluent with shallow reefs, a distinct mesophotic assemblage spanning 60-120 m, and a third that extends onto the outer continental shelf.

Dynamics of seawater carbonate chemistry, production, and calcification of a coral reef flat, central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Albright, R.; Langdon, C.; Anthony, K. R. N.

2013-10-01

Ocean acidification is projected to shift coral reefs from a state of net accretion to one of net dissolution this century. Presently, our ability to predict global-scale changes to coral reef calcification is limited by insufficient data relating seawater carbonate chemistry parameters to in situ rates of reef calcification. Here, we investigate diel and seasonal trends in carbonate chemistry of the Davies Reef flat in the central Great Barrier Reef and relate these trends to benthic carbon fluxes by quantifying net ecosystem calcification (nec) and net community production (ncp). Results show that seawater carbonate chemistry of the Davies Reef flat is highly variable over both diel and seasonal cycles. pH (total scale) ranged from 7.92 to 8.17, pCO2 ranged from 272 to 542 μatm, and aragonite saturation state (Ωarag) ranged from 2.9 to 4.1. Diel cycles in carbonate chemistry were primarily driven by ncp, and warming explained 35% and 47% of the seasonal shifts in pCO2 and pH, respectively. Daytime ncp averaged 37 ± 19 mmol C m-2 h-1 in summer and 33 ± 13 mmol C m-2 h-1 in winter; nighttime ncp averaged -30 ± 25 and -7 ± 6 mmol C m-2 h-1 in summer and winter, respectively. Daytime nec averaged 11 ± 4 mmol CaCO3 m-2 h-1 in summer and 8 ± 3 mmol CaCO3 m-2 h-1 in winter, whereas nighttime nec averaged 2 ± 4 mmol and -1 ± 3 mmol CaCO3 m-2 h-1 in summer and winter, respectively. Net ecosystem calcification was highly sensitive to changes in Ωarag for both seasons, indicating that relatively small shifts in Ωarag may drive measurable shifts in calcification rates, and hence carbon budgets, of coral reefs throughout the year.

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship

PubMed Central

Pickering, Emily A.; Adler, Alyssa M.; Taylor, J. Christopher; Peterson, Charles H.

2017-01-01

Structural complexity, a form of habitat heterogeneity, influences the structure and function of ecological communities, generally supporting increased species density, richness, and diversity. Recent research, however, suggests the most complex habitats may not harbor the highest density of individuals and number of species, especially in areas with elevated human influence. Understanding nuances in relationships between habitat heterogeneity and ecological communities is warranted to guide habitat-focused conservation and management efforts. We conducted fish and structural habitat surveys of thirty warm-temperate reefs on the southeastern US continental shelf to quantify how structural complexity influences fish communities. We found that intermediate complexity maximizes fish abundance on natural and artificial reefs, as well as species richness on natural reefs, challenging the current paradigm that abundance and other fish community metrics increase with increasing complexity. Naturally occurring rocky reefs of flat and complex morphologies supported equivalent abundance, biomass, species richness, and community composition of fishes. For flat and complex morphologies of rocky reefs to receive equal consideration as essential fish habitat (EFH), special attention should be given to detecting pavement type rocky reefs because their ephemeral nature makes them difficult to detect with typical seafloor mapping methods. Artificial reefs of intermediate complexity also maximized fish abundance, but human-made structures composed of low-lying concrete and metal ships differed in community types, with less complex, concrete structures supporting lower numbers of fishes classified largely as demersal species and metal ships protruding into the water column harboring higher numbers of fishes, including more pelagic species. Results of this study are essential to the process of evaluating habitat function provided by different types and shapes of reefs on the seafloor so that all EFH across a wide range of habitat complexity may be accurately identified and properly managed. PMID:28873447

Coral-reef front migration in the Ryukyu Arc: responses of high latitude coral reefs to Quaternary climatic changes in North Western Pacific

NASA Astrophysics Data System (ADS)

Matsuda, H.; Iryu, Y.; Machiyama, H.

2003-04-01

Coral reefs are tropic to subtropic coastal ecosystems comprising very diverse organisms. Their community structure and geographic and local distribution are highly controlled by various environmental factors. Thus, their ancient counterparts, reef deposits, provide important, high-resolution records of geoscientific events in tropic to subtropic shallow waters, such as vertical and lateral tectonic movements, sea-level fluctuations, paleoclimatic changes, and paleoceanographic variations. In order to clarify relationships between reef formation and geoscientific events, it is necessary to investigate the reef deposits at relatively higher latitudes within reef provinces, because such reefs were considered to be more sensitive to the environmental changes than those in proximal areas. It can be, therefore, considered that the northern or southern limit of reef formation, herein termed the 'coral-reef front', may have migrated to higher and lower latitudes, respectively, responding to Pleistocene global warming and cooling associated with rapid, cyclic changes in climate and oceanographic conditions and with glacioeustatic sea-level rises and falls. Thus, this study mainly aims (1) to depict paleoeclimatic and paleoceanographic fluctuations in tropic to subtropic shallow-waters in details by reconstructing the coral-reef front migration, (2) how and to what extent the reefs responded to rapid environmental changes, and (3) to evaluate a role of coral reefs in a global carbon cycle. To resolve the problems described above, the Ryukyu Islands are one of the best fields. In this proposal, we will insist that the multiple drilling that covers submarine (IODP) and land (ICDP) areas is the only way to complete our purposes.

Predicting invertebrate assemblage composition from harvesting pressure and environmental characteristics on tropical reef flats

NASA Astrophysics Data System (ADS)

Jimenez, H.; Dumas, P.; Ponton, D.; Ferraris, J.

2012-03-01

Invertebrates represent an essential component of coral reef ecosystems; they are ecologically important and a major resource, but their assemblages remain largely unknown, particularly on Pacific islands. Understanding their distribution and building predictive models of community composition as a function of environmental variables therefore constitutes a key issue for resource management. The goal of this study was to define and classify the main environmental factors influencing tropical invertebrate distributions in New Caledonian reef flats and to test the resulting predictive model. Invertebrate assemblages were sampled by visual counting during 2 years and 2 seasons, then coupled to different environmental conditions (habitat composition, hydrodynamics and sediment characteristics) and harvesting status (MPA vs. non-MPA and islets vs. coastal flats). Environmental conditions were described by a principal component analysis (PCA), and contributing variables were selected. Permutational analysis of variance (PERMANOVA) was used to test the effects of different factors (status, flat, year and season) on the invertebrate assemblage composition. Multivariate regression trees (MRT) were then used to hierarchically classify the effects of environmental and harvesting variables. MRT model explained at least 60% of the variation in structure of invertebrate communities. Results highlighted the influence of status (MPA vs. non-MPA) and location (islet vs. coastal flat), followed by habitat composition, organic matter content, hydrodynamics and sampling year. Predicted assemblages defined by indicator families were very different for each environment-exploitation scenario and correctly matched a calibration data matrix. Predictions from MRT including both environmental variables and harvesting pressure can be useful for management of invertebrates in coral reef environments.

An interhemispheric tropical sea level seesaw due to El Niño Taimasa

NASA Astrophysics Data System (ADS)

Widlansky, M. J.; Timmermann, A.; McGregor, S.; Stuecker, M. F.; Cai, W.

2013-12-01

During strong El Niño events, sea level drops around some tropical western Pacific islands by up to 20-30 cm. Such extreme events (referred to as ';taimasa' in Samoa) expose shallow reefs, thereby damaging associated coastal ecosystems and contributing to the formation of ';flat topped coral heads' often referred to as microatolls. We show that during the termination of strong El Niño events, a southward movement of weak trade winds and development of an anomalous anticyclone in the Philippine Sea force an interhemispheric sea level seesaw in the tropical Pacific which enhances and prolongs extreme low sea levels in the southwestern Pacific. Spectral features, in addition to wind forced linear shallow water ocean model experiments, identify an interaction between El Niño and the annual cycle as the main cause of these sea level anomalies. Given the well established seasonal prediction skill for El Niño events and their seasonally paced termination, our analysis suggests that long-duration extreme sea level drops may also be highly predictable.

Exploring the hidden shallows: extensive reef development and resilience within the turbid nearshore Great Barrier Reef

NASA Astrophysics Data System (ADS)

Morgan, Kyle; Perry, Chris; Smithers, Scott; Johnson, Jamie; Daniell, James

2016-04-01

Mean coral cover on Australia's Great Barrier Reef (GBR) has reportedly declined by over 15% during the last 30 years. Climate change events and outbreaks of coral disease have been major drivers of degradation, often exacerbating the stresses caused by localised human activities (e.g. elevated sediment and nutrient inputs). Here, however, in the first assessment of nearshore reef occurrence and ecology across meaningful spatial scales (15.5 sq km), we show that areas of the GBR shelf have exhibited strong intra-regional variability in coral resilience to declining water quality. Specifically, within the highly-turbid "mesophotic" nearshore (<10 m depth) of the central GBR, where terrigenous seafloor sediments are persistently resuspended by wave processes, coral cover averages 38% (twice that reported on mid- and outer-shelf reefs). Of the mapped area, 11% of the seafloor has distinct reef or coral community cover, a density comparable to that measured across the entire GBR shelf (9%). Identified coral taxa (21 genera) exhibited clear depth-stratification corresponding closely to light attenuation and seafloor topography. Reefs have accreted relatively rapidly during the late-Holocene (1.8-3.0 mm y-1) with rates of vertical reef growth influenced by intrinsic shifts in coral assemblages associated with reef development. Indeed, these shallow-water reefs may have similar potential as refugia from large-scale disturbance as their deep-water (>30 m) "mesophotic" equivalents, and also provide a basis from which to model future trajectories of reef growth within nearshore areas.

LIDAR optical rugosity of coral reefs in Biscayne National Park, Florida

USGS Publications Warehouse

Brock, J.C.; Wright, C.W.; Clayton, T.D.; Nayegandhi, A.

2004-01-01

The NASA Experimental Advanced Airborne Research Lidar (EAARL), a temporal waveform-resolving, airborne, green wavelength LIDAR (light detection and ranging), is designed to measure the submeter-scale topography of shallow reef substrates. Topographic variability is a prime component of habitat complexity, an ecological factor that both expresses and controls the abundance and distribution of many reef organisms. Following the acquisition of EAARL coverage over both mid-platform patch reefs and shelf-margin bank reefs within Biscayne National Park in August 2002, EAARL-based optical indices of topographic variability were evaluated at 15 patch reef and bank reef sites. Several sites were selected to match reefs previously evaluated in situ along underwater video and belt transects. The analysis used large populations of submarine topographic transects derived from the examination of closely spaced laser spot reflections along LIDAR raster scans. At all 15 sites, each LIDAR transect was evaluated separately to determine optical rugosity (Rotran), and the average elevation difference between adjacent points (Av(??E ap)). Further, the whole-site mean and maximum values of Ro tran and Av(??Eap) for the entire population of transects at each analysis site, along with their standard deviations, were calculated. This study revealed that the greater habitat complexity of inshore patch reefs versus outer bank reefs results in relative differences in topographic complexity that can be discerned in the laser returns. Accordingly, LIDAR sensing of optical rugosity is proposed as a complementary new technique for the rapid assessment of shallow coral reefs. ?? Springer-Verlag 2004.

Modern coral reefs of western Atlantic: new geological perspective

DOE Office of Scientific and Technical Information (OSTI.GOV)

MacIntyre, I.G.

1988-11-01

Contrary to popular belief of the late 1960s, western Atlantic Holocene reefs have a long history and are not feeble novice nearshore veneers that barely survived postglacial temperatures. Rather, the growth of these reefs kept pace with the rising seas of the Holocene transgression and their development was, for the most part, controlled by offshore wave-energy conditions and the relationship between changing sea levels and local shelf topography. Thus, the outer shelves of the eastern Caribbean in areas of high energy have relict reefs consisting predominantly of Acropora palmata, a robust shallow-water coral. The flooding of adjacent shelves during themore » postglacial transgression introduced stress conditions that terminated the growth of these reefs. When, about 7000 yr ago, shelf-water conditions improved, scattered deeper water coral communities reestablished themselves on these stranded shelf-edge reefs, and fringing and bank-barrier reefs began to flourish in shallow coastal areas. At the same time, the fragile and rapidly growing Acropora cervicornis and other corals flourished at greater depths on the more protected shelves of the western Caribbean and the Gulf of Mexico. As a result, late Holocene buildups more than 30 m thick developed in those areas. 7 figures.« less

A Global Analysis of the Relationship between Farmed Seaweed Production and Herbivorous Fish Catch.

PubMed

Hehre, E James; Meeuwig, Jessica J

2016-01-01

Globally, farmed seaweed production is expanding rapidly in shallow marine habitats. While seaweed farming provides vital income to millions of artisanal farmers, it can negatively impact shallow coral reef and seagrass habitats. However, seaweed farming may also potentially provide food subsidies for herbivorous reef fish such as the Siganidae, a valuable target family, resulting in increased catch. Comparisons of reef fish landings across the central Philippines revealed that the catch of siganids was positively correlated to farmed seaweed production whilst negatively correlated to total reef fish catch over the same period of time. We tested the generality of this pattern by analysing seaweed production, siganid catch, and reef fish catch for six major seaweed-producing countries in the tropics. We hypothesized that increased seaweed production would correspond with increased catch of siganids but not other reef fish species. Analysis of the global data showed a positive correlation between farmed seaweeds and siganids in Southeast Asia (Indonesia, Malaysia, and the Philippines) but not Africa (Tanzania and Zanzibar), or the Western Pacific (Fiji). In Southeast Asia, siganid catch increased disproportionately faster with seaweed production than did reef fish catch. Low continuity, sporadic production and smaller volumes of seaweed farming may explain the differences.

Shifting reef fish assemblages along a depth gradient in Pohnpei, Micronesia

PubMed Central

Copus, Joshua M.; Coffey, Daniel M.; Whitton, Robert K.; Bowen, Brian W.

2018-01-01

Mesophotic coral ecosystems (MCEs) continue to be understudied, especially in island locations spread across the Indo-Pacific Ocean. Pohnpei is the largest island in the Federated States of Micronesia, with a well-developed barrier reef, and steep slopes that descend to more than 1,000 m. Here we conducted visual surveys along a depth gradient of 0 to 60 m in addition to video surveys that extend to 130 m, with 72 belt transects and 12 roving surveys using closed-circuit rebreathers, to test for changes in reef fish composition from shallow to mesophotic depths. We observed 304 fish species across 47 families with the majority confined to shallow habitat. Taxonomic and trophic positions at 30 m showed similar compositions when compared against all other depths. However, assemblages were comprised of a distinct shallow (<30 m) and deep (>30 m) group, suggesting 30 m as a transition zone between these communities. Shallow specialists had a high probability of being herbivores and deep specialists had a higher probability of being planktivores. Acanthuridae (surgeonfishes), Holocentridae (soldierfishes), and Labridae (wrasses) were associated primarily with shallow habitat, while Pomacentridae (damselfishes) and Serranidae (groupers) were associated with deep habitat. Four species may indicate Central Pacific mesophotic habitat: Chromis circumaurea, Luzonichthys seaver, Odontanthias borbonius, and an undescribed slopefish (Symphysanodon sp.). This study supports the 30 m depth profile as a transition zone between shallow and mesophotic ecosystems (consistent with accepted definitions of MCEs), with evidence of multiple transition zones below 30 m. Disturbances restricted to either region are not likely to immediately impact the other and both ecosystems should be considered separately in management of reefs near human population centers. PMID:29707432

76 FR 39858 - Western Pacific Fisheries; Approval of a Marine Conservation Plan for Guam

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-07

... assessment and monitoring of Guam coral reef flat communities. Objective 6. Domestic fisheries development... life-history data of nearshore reef fish. g. Support Guam volunteer fishery data collection project. h...

pH homeostasis during coral calcification in a free ocean CO2 enrichment (FOCE) experiment, Heron Island reef flat, Great Barrier Reef

PubMed Central

Georgiou, Lucy; Falter, James; Trotter, Julie; Kline, David I.; Holcomb, Michael; Dove, Sophie G.; Hoegh-Guldberg, Ove; McCulloch, Malcolm

2015-01-01

Geochemical analyses (δ11B and Sr/Ca) are reported for the coral Porites cylindrica grown within a free ocean carbon enrichment (FOCE) experiment, conducted on the Heron Island reef flat (Great Barrier Reef) for a 6-mo period from June to early December 2010. The FOCE experiment was designed to simulate the effects of CO2-driven acidification predicted to occur by the end of this century (scenario RCP4.5) while simultaneously maintaining the exposure of corals to natural variations in their environment under in situ conditions. Analyses of skeletal growth (measured from extension rates and skeletal density) showed no systematic differences between low-pH FOCE treatments (ΔpH = ∼−0.05 to −0.25 units below ambient) and present day controls (ΔpH = 0) for calcification rates or the pH of the calcifying fluid (pHcf); the latter was derived from boron isotopic compositions (δ11B) of the coral skeleton. Furthermore, individual nubbins exhibited near constant δ11B compositions along their primary apical growth axes (±0.02 pHcf units) regardless of the season or treatment. Thus, under the highly dynamic conditions of the Heron Island reef flat, P. cylindrica up-regulated the pH of its calcifying fluid (pHcf ∼8.4–8.6), with each nubbin having near-constant pHcf values independent of the large natural seasonal fluctuations of the reef flat waters (pH ∼7.7 to ∼8.3) or the superimposed FOCE treatments. This newly discovered phenomenon of pH homeostasis during calcification indicates that coral living in highly dynamic environments exert strong physiological controls on the carbonate chemistry of their calcifying fluid, implying a high degree of resilience to ocean acidification within the investigated ranges. PMID:26438833

pH homeostasis during coral calcification in a free ocean CO2 enrichment (FOCE) experiment, Heron Island reef flat, Great Barrier Reef.

PubMed

Georgiou, Lucy; Falter, James; Trotter, Julie; Kline, David I; Holcomb, Michael; Dove, Sophie G; Hoegh-Guldberg, Ove; McCulloch, Malcolm

2015-10-27

Geochemical analyses (δ(11)B and Sr/Ca) are reported for the coral Porites cylindrica grown within a free ocean carbon enrichment (FOCE) experiment, conducted on the Heron Island reef flat (Great Barrier Reef) for a 6-mo period from June to early December 2010. The FOCE experiment was designed to simulate the effects of CO2-driven acidification predicted to occur by the end of this century (scenario RCP4.5) while simultaneously maintaining the exposure of corals to natural variations in their environment under in situ conditions. Analyses of skeletal growth (measured from extension rates and skeletal density) showed no systematic differences between low-pH FOCE treatments (ΔpH = ∼-0.05 to -0.25 units below ambient) and present day controls (ΔpH = 0) for calcification rates or the pH of the calcifying fluid (pHcf); the latter was derived from boron isotopic compositions (δ(11)B) of the coral skeleton. Furthermore, individual nubbins exhibited near constant δ(11)B compositions along their primary apical growth axes (±0.02 pHcf units) regardless of the season or treatment. Thus, under the highly dynamic conditions of the Heron Island reef flat, P. cylindrica up-regulated the pH of its calcifying fluid (pHcf ∼8.4-8.6), with each nubbin having near-constant pHcf values independent of the large natural seasonal fluctuations of the reef flat waters (pH ∼7.7 to ∼8.3) or the superimposed FOCE treatments. This newly discovered phenomenon of pH homeostasis during calcification indicates that coral living in highly dynamic environments exert strong physiological controls on the carbonate chemistry of their calcifying fluid, implying a high degree of resilience to ocean acidification within the investigated ranges.

Carbonate Platform Development and Stromatolite Morphogenesis: Constraints on Environmental and Biological Evolution

NASA Technical Reports Server (NTRS)

Grotzinger, John P.

2003-01-01

Work has been completed on the digital mapping of a terminal Proterozoic reef complex in Namibia. This complex formed an isolated carbonate platform developed downdip on a carbonate ramp of the Nama Group. The stratigraphic evolution of the platform was digitally reconstructed from an extensive dataset that was compiled by using digital surveying technologies. The platform comprises three accommodation cycles in which each subsequent cycle experienced progressively greater influence of a long-term accommodation increase. Aggradation and progradation during the first cycle resulted in a flat, uniform, sheet-like platform. The coarsening and shallowing-upward sequence representing the first cycle is dominated by columnar stromatolitic thrombolites and massive dolostones with interbedded mudstone-grainstone at the base of the sequence grading into cross-bedded dolostones. The second cycle features aggradation, formation of a distinct margin containing thrombolite mounds and domes, and the development of a bucket geometry. Columnar stromatolitic thrombolites dominate the platform interior. The final stage of platform development shows a deepening trend with initial aggradation and formation of well-bedded, thin deposits in the interior and mound development at the margins. While the interior drowned, the platform margin kept up with rising sea level and a complex pinnacle reef formed containing fused and coalesced thrombolite mounds flanked by bioclastic grainstones (containing Cloudina and Namacalathus fossils) and collapse breccias. A set of isolated large thrombolite mounds flanked by shales indicate the final stage of the carbonate platform. During a progressive increase in accommodation, a flat-topped isolated carbonate platform becomes aerially less extensive by either backstepping or formation of smaller pinnacles or a combination of both. The overall geometric evolution of the studied platform from flat-topped to bucket with elevated margins is recorded in many Proterozoic and Phanerozoic isolated carbonate platforms with similar dimensions. The terminal Proterozoic, microbial-dominated, isolated carbonate platform of this study clearly illustrates that the answer to accommodation changes was already familiar among carbonate platforms before the dawn of metazoan-dominated platforms.

Infragravity waves on fringing reefs in the tropical Pacific: Dynamic setup

NASA Astrophysics Data System (ADS)

Becker, J. M.; Merrifield, M. A.; Yoon, H.

2016-05-01

Cross-shore pressure and current observations from four fringing reefs of lengths ranging from 135 to 420 m reveal energetic low-frequency (˜0.001-0.05 Hz) motions. The spatial structure and temporal amplitudes of an empirical orthogonal function analysis of the pressure measurements suggest the dominant low-frequency variability is modal. Incoming and outgoing linear flux estimates also support partially standing modes on the reef flat during energetic events. A cross-covariance analysis suggests that breakpoint forcing excites these partially standing modes, similar to previous findings at other steep reefs. The dynamics of Symonds et al. (1982) with damping are applied to a step reef, with forcing obtained by extending a point break model of Vetter et al. (2010) for breaking wave setup to the low-frequency band using the shoaled envelope of the incident free surface elevation. A one parameter, linear analytical model for the reef flat free surface elevation is presented, which describes between 75% and 97% of the variance of the observed low-frequency shoreline significant wave height for all reefs considered over a range of conditions. The linear model contains a single dimensionless parameter that is the ratio of the inertial to dissipative time scales, and the observations from this study exhibit more low-frequency variability when the dissipative time scale is greater than the inertial time scale for the steep reefs considered.

Blacktip reef sharks, Carcharhinus melanopterus, have high genetic structure and varying demographic histories in their Indo-Pacific range.

PubMed

Vignaud, Thomas M; Mourier, Johann; Maynard, Jeffrey A; Leblois, Raphael; Spaet, Julia; Clua, Eric; Neglia, Valentina; Planes, Serge

2014-11-01

For free-swimming marine species like sharks, only population genetics and demographic history analyses can be used to assess population health/status as baseline population numbers are usually unknown. We investigated the population genetics of blacktip reef sharks, Carcharhinus melanopterus; one of the most abundant reef-associated sharks and the apex predator of many shallow water reefs of the Indian and Pacific Oceans. Our sampling includes 4 widely separated locations in the Indo-Pacific and 11 islands in French Polynesia with different levels of coastal development. Four-teen microsatellite loci were analysed for samples from all locations and two mitochondrial DNA fragments, the control region and cytochrome b, were examined for 10 locations. For microsatellites, genetic diversity is higher for the locations in the large open systems of the Red Sea and Australia than for the fragmented habitat of the smaller islands of French Polynesia. Strong significant structure was found for distant locations with FST values as high as ~0.3, and a smaller but still significant structure is found within French Polynesia. Both mitochondrial genes show only a few mutations across the sequences with a dominant shared haplotype in French Polynesia and New Caledonia suggesting a common lineage different to that of East Australia. Demographic history analyses indicate population expansions in the Red Sea and Australia that may coincide with sea level changes after climatic events. Expansions and flat signals are indicated for French Polynesia as well as a significant recent bottleneck for Moorea, the most human-impacted lagoon of the locations in French Polynesia. © 2014 John Wiley & Sons Ltd.

Benthic habitat and fish assemblage structure from shallow to mesophotic depths in a storm-impacted marine protected area

NASA Astrophysics Data System (ADS)

Abesamis, Rene A.; Langlois, Tim; Birt, Matthew; Thillainath, Emma; Bucol, Abner A.; Arceo, Hazel O.; Russ, Garry R.

2018-03-01

Baseline ecological studies of mesophotic coral ecosystems are lacking in the equatorial Indo-West Pacific region where coral reefs are highly threatened by anthropogenic and climate-induced disturbances. Here, we used baited remote underwater video to describe benthic habitat and fish assemblage structure from 10 to 80 m depth at Apo Island, a well-managed marine protected area in the Philippines. We conducted surveys 2 yr after two storms (in 2011 and 2012) caused severe damage to shallow coral communities within the no-take marine reserve (NTMR) of Apo Island, which led to declines in fish populations that had built up over three decades. We found that hard coral cover was restricted to < 40 m deep in the storm-impacted NTMR and a nearby fished area not impacted by storms. Benthic cover at mesophotic depths (> 30 m) was dominated by sand/rubble and rock (dead coral) with low cover of soft corals, sponges and macroalgae. Storm damage appeared to have reached the deepest limit of the fringing reef (40 m) and reduced variability in benthic structure within the NTMR. Species richness and/or abundance of most trophic groups of fish declined with increasing depth regardless of storm damage. There were differences in taxonomic and trophic structure and degree of targeting by fisheries between shallow and mesophotic fish assemblages. Threatened shark species and a fish species previously unreported in the Philippines were recorded at mesophotic depths. Our findings provide a first glimpse of the benthic and fish assemblage structure of Philippine coral reef ecosystems across a wide depth gradient. This work also underscores how a combination of limited coral reef development at mesophotic depths close to shallow reefs and severe habitat loss caused by storms would result in minimal depth refuge for reef fish populations.

Impacts of category 5 tropical cyclone Fantala (April 2016) on Farquhar Atoll, Seychelles Islands, Indian Ocean

NASA Astrophysics Data System (ADS)

Duvat, Virginie K. E.; Volto, Natacha; Salmon, Camille

2017-12-01

This paper provides new insights on the impacts of a category 5 tropical cyclone on Indian Ocean atoll reef islands. Using multi-date aerial imagery and field observations, the contribution of tropical cyclone Fantala to shoreline and island change, and to sediment production and transport, was assessed on Farquhar Atoll, Seychelles Islands. Results show that the two largest islands (> 3 km2) only suffered limited land loss (- 1.19 to - 8.35%) while small islets lost 13.17 to 28.45% of their initial land area. Islands and islets exhibited contrasting responses depending on their location, topography and vegetation type. Depending on islands, the retreat of the vegetation line occurred either along all shorelines, or along ocean shoreline only. The structure (wooded vs. grassy) and origin (native vs. introduced) of the vegetation played a major role in island response. Five days after the cyclone, beach width and beach area were multiplied by 1.5 to 10, depending on the setting, and were interpreted as resulting from both sediment reworking and the supply of large amounts of fresh sediments by the reef outer slopes to the island system. Fourth months after the cyclone, extended sheets of loose sediments were still present on the reef flat and in inter-islet channels and shallow lagoon waters, indicating continuing sediment transfer to islands. As a reminder (see Section 3.1.4), beach width uncertainty equals to 6 m for all beach sections.

Spatial variability of sediment transport processes over intra‐ and subtidal timescales within a fringing coral reef system

USGS Publications Warehouse

Pomeroy, Andrew; Lowe, Ryan J.; Ghisalberti, Marco; Winter, Gundula; Storlazzi, Curt D.; Cuttler, Michael V. W.

2018-01-01

Sediment produced on fringing coral reefs that is transported along the bed or in suspension affects ecological reef communities as well as the morphological development of the reef, lagoon, and adjacent shoreline. This study quantified the physical process contribution and relative importance of incident waves, infragravity waves, and mean currents to the spatial and temporal variability of sediment in suspension. Estimates of bed shear stresses demonstrate that incident waves are the key driver of the SSC variability spatially (reef flat, lagoon, and channels) but cannot not fully describe the SSC variability alone. The comparatively small but statistically significant contribution to the bed shear stress by infragravity waves and currents, along with the spatial availability of sediment of a suitable size and volume, is also important. Although intra‐tidal variability in SSC occurs in the different reef zones, the majority of the variability occurs over longer slowly varying (subtidal) time scales, which is related to the arrival of large incident waves at a reef location. The predominant flow pathway, which can transport suspended sediment, consists of cross‐reef flow across the reef flat that diverges in the lagoon and returns offshore through channels. This pathway is primarily due to subtidal variations in wave‐driven flows, but can also be driven alongshore by wind stresses when the incident waves are small. Higher frequency (intra‐tidal) current variability also occur due to both tidal flows, as well as variations in the water depth that influence wave transmission across the reef and wave‐driven currents.

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore.

PubMed

Guest, J R; Tun, K; Low, J; Vergés, A; Marzinelli, E M; Campbell, A H; Bauman, A G; Feary, D A; Chou, L M; Steinberg, P D

2016-11-08

Coral cover on reefs is declining globally due to coastal development, overfishing and climate change. Reefs isolated from direct human influence can recover from natural acute disturbances, but little is known about long term recovery of reefs experiencing chronic human disturbances. Here we investigate responses to acute bleaching disturbances on turbid reefs off Singapore, at two depths over a period of 27 years. Coral cover declined and there were marked changes in coral and benthic community structure during the first decade of monitoring at both depths. At shallower reef crest sites (3-4 m), benthic community structure recovered towards pre-disturbance states within a decade. In contrast, there was a net decline in coral cover and continuing shifts in community structure at deeper reef slope sites (6-7 m). There was no evidence of phase shifts to macroalgal dominance but coral habitats at deeper sites were replaced by unstable substrata such as fine sediments and rubble. The persistence of coral dominance at chronically disturbed shallow sites is likely due to an abundance of coral taxa which are tolerant to environmental stress. In addition, high turbidity may interact antagonistically with other disturbances to reduce the impact of thermal stress and limit macroalgal growth rates.

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore

PubMed Central

Guest, J. R.; Tun, K.; Low, J.; Vergés, A.; Marzinelli, E. M.; Campbell, A. H.; Bauman, A. G.; Feary, D. A.; Chou, L. M.; Steinberg, P. D.

2016-01-01

Coral cover on reefs is declining globally due to coastal development, overfishing and climate change. Reefs isolated from direct human influence can recover from natural acute disturbances, but little is known about long term recovery of reefs experiencing chronic human disturbances. Here we investigate responses to acute bleaching disturbances on turbid reefs off Singapore, at two depths over a period of 27 years. Coral cover declined and there were marked changes in coral and benthic community structure during the first decade of monitoring at both depths. At shallower reef crest sites (3–4 m), benthic community structure recovered towards pre-disturbance states within a decade. In contrast, there was a net decline in coral cover and continuing shifts in community structure at deeper reef slope sites (6–7 m). There was no evidence of phase shifts to macroalgal dominance but coral habitats at deeper sites were replaced by unstable substrata such as fine sediments and rubble. The persistence of coral dominance at chronically disturbed shallow sites is likely due to an abundance of coral taxa which are tolerant to environmental stress. In addition, high turbidity may interact antagonistically with other disturbances to reduce the impact of thermal stress and limit macroalgal growth rates. PMID:27824083

A Global Analysis of the Relationship between Farmed Seaweed Production and Herbivorous Fish Catch

PubMed Central

2016-01-01

Globally, farmed seaweed production is expanding rapidly in shallow marine habitats. While seaweed farming provides vital income to millions of artisanal farmers, it can negatively impact shallow coral reef and seagrass habitats. However, seaweed farming may also potentially provide food subsidies for herbivorous reef fish such as the Siganidae, a valuable target family, resulting in increased catch. Comparisons of reef fish landings across the central Philippines revealed that the catch of siganids was positively correlated to farmed seaweed production whilst negatively correlated to total reef fish catch over the same period of time. We tested the generality of this pattern by analysing seaweed production, siganid catch, and reef fish catch for six major seaweed-producing countries in the tropics. We hypothesized that increased seaweed production would correspond with increased catch of siganids but not other reef fish species. Analysis of the global data showed a positive correlation between farmed seaweeds and siganids in Southeast Asia (Indonesia, Malaysia, and the Philippines) but not Africa (Tanzania and Zanzibar), or the Western Pacific (Fiji). In Southeast Asia, siganid catch increased disproportionately faster with seaweed production than did reef fish catch. Low continuity, sporadic production and smaller volumes of seaweed farming may explain the differences. PMID:26894553

Spectral Diversity and Regulation of Coral Fluorescence in a Mesophotic Reef Habitat in the Red Sea.

PubMed

Eyal, Gal; Wiedenmann, Jörg; Grinblat, Mila; D'Angelo, Cecilia; Kramarsky-Winter, Esti; Treibitz, Tali; Ben-Zvi, Or; Shaked, Yonathan; Smith, Tyler B; Harii, Saki; Denis, Vianney; Noyes, Tim; Tamir, Raz; Loya, Yossi

2015-01-01

The phenomenon of coral fluorescence in mesophotic reefs, although well described for shallow waters, remains largely unstudied. We found that representatives of many scleractinian species are brightly fluorescent at depths of 50-60 m at the Interuniversity Institute for Marine Sciences (IUI) reef in Eilat, Israel. Some of these fluorescent species have distribution maxima at mesophotic depths (40-100 m). Several individuals from these depths displayed yellow or orange-red fluorescence, the latter being essentially absent in corals from the shallowest parts of this reef. We demonstrate experimentally that in some cases the production of fluorescent pigments is independent of the exposure to light; while in others, the fluorescence signature is altered or lost when the animals are kept in darkness. Furthermore, we show that green-to-red photoconversion of fluorescent pigments mediated by short-wavelength light can occur also at depths where ultraviolet wavelengths are absent from the underwater light field. Intraspecific colour polymorphisms regarding the colour of the tissue fluorescence, common among shallow water corals, were also observed for mesophotic species. Our results suggest that fluorescent pigments in mesophotic reefs fulfil a distinct biological function and offer promising application potential for coral-reef monitoring and biomedical imaging.

Postglacial Fringing-Reef to Barrier-Reef conversion on Tahiti links Darwin's reef types

NASA Astrophysics Data System (ADS)

Blanchon, Paul; Granados-Corea, Marian; Abbey, Elizabeth; Braga, Juan C.; Braithwaite, Colin; Kennedy, David M.; Spencer, Tom; Webster, Jody M.; Woodroffe, Colin D.

2014-05-01

In 1842 Charles Darwin claimed that vertical growth on a subsiding foundation caused fringing reefs to transform into barrier reefs then atolls. Yet historically no transition between reef types has been discovered and they are widely considered to develop independently from antecedent foundations during glacio-eustatic sea-level rise. Here we reconstruct reef development from cores recovered by IODP Expedition 310 to Tahiti, and show that a fringing reef retreated upslope during postglacial sea-level rise and transformed into a barrier reef when it encountered a Pleistocene reef-flat platform. The reef became stranded on the platform edge, creating a lagoon that isolated it from coastal sediment and facilitated a switch to a faster-growing coral assemblage dominated by acroporids. The switch increased the reef's accretion rate, allowing it to keep pace with rising sea level, and transform into a barrier reef. This retreat mechanism not only links Darwin's reef types, but explains the re-occupation of reefs during Pleistocene glacio-eustacy.

Mg/Ca and Sr/Ca as novel geochemical proxies for understanding sediment transport processes within coral reefs

NASA Astrophysics Data System (ADS)

Gacutan, J.; Vila-Concejo, A.; Nothdurft, L. D.; Fellowes, T. E.; Cathey, H. E.; Opdyke, B. N.; Harris, D. L.; Hamylton, S.; Carvalho, R. C.; Byrne, M.; Webster, J. M.

2017-10-01

Sediment transport is a key driver of reef zonation and biodiversity, where an understanding of sediment dynamics gives insights into past reef processes and allows the prediction of geomorphic responses to changing environmental conditions. However, modal conditions within the back-reef seldom promote sediment transport, hence direct observation is inherently difficult. Large benthic foraminifera (LBF) have previously been employed as 'tracers' to infer sediment transport pathways on coral reefs, as their habitat is largely restricted to the algal flat and post-mortem, their calcium carbonate test is susceptible to sediment transport forces into the back-reef. Foraminiferal test abundance and post-depositional test alteration have been used as proxies for sediment transport, although the resolution of these measures becomes limited by low test abundance and the lack of variation within test alteration. Here we propose the novel use of elemental ratios as a proxy for sediment transport. Two species, Baculogypsina sphaerulata and Calcarina capricornia, were analysed using a taphonomic index within One Tree and Lady Musgrave reefs, Great Barrier Reef (Australia). Inductively coupled plasma-atomic emission spectrometry (ICP-AES) was used to determine Mg/Ca and Sr/Ca and these ratios were compared with taphonomic data. Decreases in test Mg/Ca accompany increases in Sr/Ca in specimens from algal-flat to lagoonal samples in both species, mirroring trends indicated by taphonomic values, therefore indicating a relationship with test alteration. To delineate mechanisms driving changes in elemental ratios, back-scattered electron (BSE) images, elemental mapping and in situ quantitative spot analyses by electron microprobe microanalysis (EPMA) using wavelength dispersive X-ray spectrometers (WDS) were performed on un-altered algal flat and heavily abraded tests for both species. EPMA analyses reveal heterogeneity in Mg/Ca between spines and the test wall, implying the loss of appendages results in a decrease in Mg/Ca. BSE imaging and WDS elemental mapping provided evidence for cementation, facilitated by microbial-boring as the primary cause of increasing Sr/Ca. These novel proxies hold advantages over taphonomic measures and further provide a rapid method to infer sediment transport pathways within back-reef environments.

Environmental and ecological upheval in shallow marine systems during the Early Jurassic (Pliensbachian and Toarcian)

NASA Astrophysics Data System (ADS)

Martindale, R. C.; Ettinger, N. P.; Bodin, S.; Kosir, A.; Brame, H. M. R.; Thibodeau, A. M.; Larson, T. E.; Kerans, C.

2017-12-01

Carbon cycle perturbations, such as the Toarcian Oceanic Anoxic Event (T-OAE), have a significant influence on marine communities (e.g., extinctions), as well as the nature of the sedimentary record (e.g., carbonate factory collapse and black shale deposition) and geochemical cycling. To date, there remains a gap in our knowledge about the shallow-water record of the T-OAE and the geochemical signature of this event. This research combines geochemical, sedimentological, and paleontological data from two shallow-water Early Jurassic records in Slovenia and Morocco. The Dinaric Carbonate Platform (Slovenia) records a relatively continuous record of Pliensbachian and Toarcian strata and captures the T-OAE in shallow-water carbonates. The Trnovski Gozd karst plateau (western Slovenia) contains Pleinsbachian lithiotid (bivalve) biostromes, coral bioherms, and a diverse assemblage of carbonate producing fauna. This work documents the geochemical and sedimentological signature of the T-OAE in shallow water carbonates and tests whether mercury concentrations link paleontological and sedimentological changes with the Karoo-Ferrar Large Igneous Province. Elemental data coupled with sedimentologic and stratigraphic evidence indicate a prolonged period of deoxygenation on the shelf coincident with both large igneous province activity and the OAE. The Moroccan High Atlas Mountains provide another excellent shallow-water record of the T-OAE, with a thick mixed carbonate-siliciclastic shelf-to-ramp setting with sustained deposition through the Early Jurassic interval. In Morocco there is no evidence for anoxia in this shallow-water locality; however, the carbonate factory collapses at the Pliensbachian-Toarcian stage boundary as well as the T-OAE. Reef communities, particularly the lithiotid biostromes, persist across the stage boundary and are observed through to the T-OAE. The studied localities also record the oldest corals reefs following the T-OAE; coral reefs recover relatively quickly, but lithiotid reefs never recover. These data will allow us to build a more nuanced understanding of the paleoenvironmental conditions during the T-OAE, connect the basinal and shallower-water records of the OAE, as well as document the collapse and recovery of communities during this extinction.

A New Perspective: Assessing the Spatial Distribution of Coral Bleaching with Unmanned Low Altitude Remote Sensing Systems

NASA Astrophysics Data System (ADS)

Levy, J.; Franklin, E. C.; Hunter, C. L.

2016-12-01

Coral reefs are biodiversity hotspots that are vital to the function of global economic and biological processes. Coral bleaching is a significant contributor to the global decline of reefs and can impact an expansive reef area over short timescales. In order to understand the dynamics of coral bleaching and how these stress events impact reef ecosystems, it is important to conduct rapid bleaching surveys at functionally important spatial scales. Due to the inherent heterogeneity, size, and in some cases, remoteness of coral reefs, it is difficult to routinely monitor coral bleaching dynamics before, during, and after bleaching. Additionally, current in situ survey methods only collect snippets of discrete reef data over small reef areas, which are unable to accurately represent the reef as a whole. We present a new technique using small unmanned aerial systems (sUAS) as cost effective, efficient monitoring tools that target small to intermediate-scale reef dynamics to understand the spatial distribution of bleached coral colonies during the 2015 bleaching event on patch reefs in Kaneohe Bay, Oahu. Overlapping low altitude aerial images were collected at four reefs during the bleaching period and processed using Structure-from-Motion techniques to produce georeferenced and spatially accurate orthomosaics of complete reef areas. Mosaics were analyzed using manual and heuristic neural network classification schemes to identify comprehensive populations of bleached and live coral on each patch reef. We found that bleached colonies had random and clumped distributions on patch reefs in Kaneohe Bay depending on local environmental conditions. Our work demonstrates that sUAS provide a low cost, efficient platform that can rapidly and repeatedly collect high-resolution imagery (1 cm/pixel) and map large areas of shallow reef ecosystems (5 hectares). This study proves the feasibility of utilizing sUAS as a tool to collect spatially rich reef data that will provide reef scientists a new perspective on meso-scale coral reef dynamics. We envision that similar low altitude aerial surveys will be incorporated as a standard component of shallow-water reef studies, especially on reefs too dangerous or remote for in situ surveys.

Holocene reef growth over irregular Pleistocene karst confirms major influence of hydrodynamic factors on Holocene reef development

NASA Astrophysics Data System (ADS)

Salas-Saavedra, Marcos; Dechnik, Belinda; Webb, Gregory E.; Webster, Jody M.; Zhao, Jian-xin; Nothdurft, Luke D.; Clark, Tara R.; Graham, Trevor; Duce, Stephanie

2018-01-01

Many factors govern reef growth through time, but their relative contributions are commonly poorly known. A prime example is the degree to which modern reef morphology is controlled by contemporary hydrodynamic settings or antecedent topography. Fortunately, reefs record essential information for interpreting palaeoclimate and palaeoenvironment within their structure as they accrete in response to environmental change. Five new cores recovered from the margin of Heron Reef, southern Great Barrier Reef (GBR), provide new insights into Holocene reef development and relationships between Holocene reefs and Pleistocene antecedent topography, suggesting much more irregular underlying topography than expected based on the configuration of the overlying modern reef margin. Cores were recovered to depths of 30 m and 94 new 230Th ages document growth between 8408 ± 24 and 2222 ± 16 yrs. BP. One core penetrated Pleistocene basement at ∼15.3 m with Holocene reef growth initiated by ∼8.4 ka BP. However, 1.83 km west along the same smooth margin, four cores failed to penetrate Pleistocene basement at depths between 20 and 30 m, suggesting that the margin at this location overlies a karst valley, or alternatively, the antecedent platform does not extend there. A 48 m-long margin-perpendicular transect of three cores documents the filling of this topographic low, at least 30 m beneath the current reef top, with seaward lateral accretion at a rate of 34.3 m/ka. Cores indicate steady vertical and lateral accretion between 3.2 and 1.8 ka BP with no evidence of the hiatus in reef flat progradation seen in most other offshore reefs of the GBR at that time. These cores suggest that the relative protection afforded by the valley allowed for unconsolidated sediment to accumulate, enabling continuous progradation even when other areas of the reef flat appear to have 'turned off'. Additionally, the cores suggest that although reefs in the southern GBR clearly owe their location to Pleistocene antecedent topography, modern reef morphology at sea level primarily reflects the interaction of Holocene reef communities with contemporary hydrodynamics.

Effects of intermittent flow and irradiance level on back reef Porites corals at elevated seawater temperatures

USGS Publications Warehouse

Smith, L.W.; Birkeland, C.

2007-01-01

Corals inhabiting shallow back reef habitats are often simultaneously exposed to elevated seawater temperatures and high irradiance levels, conditions known to cause coral bleaching. Water flow in many tropical back reef systems is tidally influenced, resulting in semi-diurnal or diurnal flow patterns. Controlled experiments were conducted to test effects of semi-diurnally intermittent water flow on photoinhibition and bleaching of the corals Porites lobata and P. cylindrica kept at elevated seawater temperatures and different irradiance levels. All coral colonies were collected from a shallow back reef pool on Ofu Island, American Samoa. In the high irradiance experiments, photoinhibition and bleaching were less for both species in the intermittent high-low flow treatment than in the constant low flow treatment. In the low irradiance experiments, there were no differences in photoinhibition or bleaching for either species between the flow treatments, despite continuously elevated seawater temperatures. These results suggest that intermittent flow associated with semi-diurnal tides, and low irradiances caused by turbidity or shading, may reduce photoinhibition and bleaching of back reef corals during warming events. ?? 2006 Elsevier B.V. All rights reserved.

Mid-term coral-algal dynamics and conservation status of a Gorgona Island (Tropical Eastern Pacific) coral reef.

PubMed

Zapata, Fernando A; Rodríguez-Ramírez, Alberto; Caro-Zambrano, Carlos; Garzón-Ferreira, Jaime

2010-05-01

Colombian coral reefs, as other reefs worldwide, have deteriorated significantly during the last few decades due to both natural and anthropogenic disturbances. The National Monitoring System for Coral Reefs in Colombia (SIMAC) was established in 1998 to provide long-term data bases to assess the changes of Colombian coral reefs against perturbations and to identify the factors responsible for their decline or recovery. On the Pacific coast, data on coral and algal cover have been collected yearly during seven consecutive years (1998-2004) from 20 permanent transects in two sites at La Azufrada reef, Gorgona Island. Overall, coral cover was high (55.1%-65.7%) and algal cover low (28.8%-37.5%) and both exhibited significant changes among years, most notably on shallow areas. Differences between sites in both coral and algal cover were present since the study began and may be explained by differences in sedimentation stress derived from soil runoff. Differences between depths most likely stem from the effects of low tidal sub-aerial exposures. Particularly intense sub-aerial exposures occurred repeatedly during January-March, 2001 and accounted for a decrease in coral and an increase in algal cover on shallow depths observed later that year. Additionally, the shallow area on the Northern site seems to be negatively affected by the combined effect of sedimentation and low tidal exposure. However, a decrease in coral cover and an increase of algal cover since 2001 on deep areas at both sites remain unexplained. Comparisons with previous studies suggest that the reef at La Azufrada has been more resilient than other reefs in the Tropical Eastern Pacific (TEP), recovering pre-disturbance (1979) levels of coral cover within a 10 year period after the 1982-83 El Niño, which caused 85% mortality. Furthermore, the effects of the 1997-98 El Niño, indicated by the difference in overall live coral cover between 1998 and 1999, were minor (< 6% reduction). Despite recurrent natural disturbances, live coral cover in 2004 was as high as that existing before 1982 at La Azufrada, and one of the highest observed on healthy coral reefs in the TEP region.

From Submarine Volcanoes to Modern Atolls: New Insights from the Mozambique Channel (SW Indian Ocean)

NASA Astrophysics Data System (ADS)

Jorry, S.; Courgeon, S.; Camoin, G.; BouDagher-Fadel, M.; Jouet, G.; Poli, E.

2016-12-01

Although the long-term evolution of isolated shallow-water carbonate platforms leading to guyot and atoll formation has been the subject of numerous studies during the last decades, their driving processes are still the subject of active debates. The Mozambique Channel (SW Indian Ocean) is characterized by several modern carbonate platforms, ranging from 11°S to 21°S in latitudes. These platforms are characterized by reef margins mostly developed on windward sides with internal parts blanketed by sand dunes and numerous reef pinnacles, or by Darwin-type atolls with enclosed lagoons. Dredge sampling, underwater observations and geophysical acquisitions carried out during recent oceanographic cruises (PTOLEMEE and PAMELA-MOZ1) along slopes and basins adjacent to modern platforms led to the discovery of flat-top seamounts corresponding to shallow-water carbonate platforms which grew on top of submarine volcanoes. Microfacies and datings (biostratigraphy analysis coupled with Strontium isotopic stratigraphy) indicate that those carbonate platforms, characterized by fauna assemblages dominated by corals, Halimeda and red algaes, and larger benthic foraminifera, developed in tropical settings from Early Miocene to Late Miocene/Early Pliocene times. Submarine volcanism, karstification and pedogenesis evidences on top of the drowned edifices demonstrate that tectonic deformation, rejuvenated volcanic activity and subaerial exposure occurred after and potentially during the Neogene platform aggradation. Growth of modern platforms on top of submerged carbonate terraces is explained by topographic irregularities inherited from volcanism, tectonic and/or subaerial exposure conditions which could have produced favorable substratum for carbonates which grew during the Plio-Quaternary, up to reach modern sea-level. This research is co-funded by TOTAL and IFREMER as part of the PAMELA (Passive Margin Exploration Laboratories) scientific project.

Sponge communities on Caribbean coral reefs are structured by factors that are top-down, not bottom-up.

PubMed

Pawlik, Joseph R; Loh, Tse-Lynn; McMurray, Steven E; Finelli, Christopher M

2013-01-01

Caribbean coral reefs have been transformed in the past few decades with the demise of reef-building corals, and sponges are now the dominant habitat-forming organisms on most reefs. Competing hypotheses propose that sponge communities are controlled primarily by predatory fishes (top-down) or by the availability of picoplankton to suspension-feeding sponges (bottom-up). We tested these hypotheses on Conch Reef, off Key Largo, Florida, by placing sponges inside and outside predator-excluding cages at sites with less and more planktonic food availability (15 m vs. 30 m depth). There was no evidence of a bottom-up effect on the growth of any of 5 sponge species, and 2 of 5 species grew more when caged at the shallow site with lower food abundance. There was, however, a strong effect of predation by fishes on sponge species that lacked chemical defenses. Sponges with chemical defenses grew slower than undefended species, demonstrating a resource trade-off between growth and the production of secondary metabolites. Surveys of the benthic community on Conch Reef similarly did not support a bottom-up effect, with higher sponge cover at the shallower depth. We conclude that the structure of sponge communities on Caribbean coral reefs is primarily top-down, and predict that removal of sponge predators by overfishing will shift communities toward faster-growing, undefended species that better compete for space with threatened reef-building corals.

Sponge Communities on Caribbean Coral Reefs Are Structured by Factors That Are Top-Down, Not Bottom-Up

PubMed Central

Pawlik, Joseph R.; Loh, Tse-Lynn; McMurray, Steven E.; Finelli, Christopher M.

2013-01-01

Caribbean coral reefs have been transformed in the past few decades with the demise of reef-building corals, and sponges are now the dominant habitat-forming organisms on most reefs. Competing hypotheses propose that sponge communities are controlled primarily by predatory fishes (top-down) or by the availability of picoplankton to suspension-feeding sponges (bottom-up). We tested these hypotheses on Conch Reef, off Key Largo, Florida, by placing sponges inside and outside predator-excluding cages at sites with less and more planktonic food availability (15 m vs. 30 m depth). There was no evidence of a bottom-up effect on the growth of any of 5 sponge species, and 2 of 5 species grew more when caged at the shallow site with lower food abundance. There was, however, a strong effect of predation by fishes on sponge species that lacked chemical defenses. Sponges with chemical defenses grew slower than undefended species, demonstrating a resource trade-off between growth and the production of secondary metabolites. Surveys of the benthic community on Conch Reef similarly did not support a bottom-up effect, with higher sponge cover at the shallower depth. We conclude that the structure of sponge communities on Caribbean coral reefs is primarily top-down, and predict that removal of sponge predators by overfishing will shift communities toward faster-growing, undefended species that better compete for space with threatened reef-building corals. PMID:23667492

Shelf stratigraphy and the influence of antecedent substrate on Holocene reef development, south Oahu, Hawaii

USGS Publications Warehouse

Grossman, E.E.; Barnhardt, W.A.; Hart, P.; Richmond, B.M.; Field, M.E.

2006-01-01

Paired analyses of drill cores and high-resolution seismic reflection data show that development of Holocene framework reefs on the Oahu (Hawaii) shelf is limited to settings of low wave energy and to the period 8000 to 3000 yr BP. A prominent bounding surface that is mapped across much of the Oahu shelf is an erosion surface cut into Marine Isotope Stages 5 and 7 limestones that show extensive loss of primary porosity, aragonite, and MgCO3 owing to meteoric and vadose-zone diagenesis. This acoustic reflector is found exposed at the surface where wave energy is high or in the shallow subsurface below Holocene reef and sand sheet deposits where energy is low. Ship-towed video along 30 km of the shelf reveals a steady decrease in limestone accumulation from offshore of Honolulu southeast to Koko Head where the seafloor is characterized by volcanic pavement and/or thin sand deposits. This may reflect the build-up of late Pleistocene volcanics associated with the Hanauma Bay eruption (30,000-7000 yr BP) that now comprise the substrate in depths shallow enough to limit reef accretion. The absence of significant Holocene reef build-up on the south Oahu shelf is consistent with observations from north-facing coasts that lack Holocene reefs, indicating that Holocene reef formation in Hawaii is complex and patchy.

Physical and Biological Controls on the Carbonate Chemistry of Coral Reef Waters: Effects of Metabolism, Wave Forcing, Sea Level, and Geomorphology

PubMed Central

Falter, James L.; Lowe, Ryan J.; Zhang, Zhenlin; McCulloch, Malcolm

2013-01-01

We present a three-dimensional hydrodynamic-biogeochemical model of a wave-driven coral-reef lagoon system using the circulation model ROMS (Regional Ocean Modeling System) coupled with the wave transformation model SWAN (Simulating WAves Nearshore). Simulations were used to explore the sensitivity of water column carbonate chemistry across the reef system to variations in benthic reef metabolism, wave forcing, sea level, and system geomorphology. Our results show that changes in reef-water carbonate chemistry depend primarily on the ratio of benthic metabolism to the square root of the onshore wave energy flux as well as on the length and depth of the reef flat; however, they are only weakly dependent on channel geometry and the total frictional resistance of the reef system. Diurnal variations in pCO2, pH, and aragonite saturation state (Ωar) are primarily dependent on changes in net production and are relatively insensitive to changes in net calcification; however, net changes in pCO2, pH, and Ωar are more strongly influenced by net calcification when averaged over 24 hours. We also demonstrate that a relatively simple one-dimensional analytical model can provide a good description of the functional dependence of reef-water carbonate chemistry on benthic metabolism, wave forcing, sea level, reef flat morphology, and total system frictional resistance. Importantly, our results indicate that any long-term (weeks to months) net offsets in reef-water pCO2 relative to offshore values should be modest for reef systems with narrow and/or deep lagoons. Thus, the long-term evolution of water column pCO2 in many reef environments remains intimately connected to the regional-scale oceanography of offshore waters and hence directly influenced by rapid anthropogenically driven increases in pCO2. PMID:23326411

Physical and biological controls on the carbonate chemistry of coral reef waters: effects of metabolism, wave forcing, sea level, and geomorphology.

PubMed

Falter, James L; Lowe, Ryan J; Zhang, Zhenlin; McCulloch, Malcolm

2013-01-01

We present a three-dimensional hydrodynamic-biogeochemical model of a wave-driven coral-reef lagoon system using the circulation model ROMS (Regional Ocean Modeling System) coupled with the wave transformation model SWAN (Simulating WAves Nearshore). Simulations were used to explore the sensitivity of water column carbonate chemistry across the reef system to variations in benthic reef metabolism, wave forcing, sea level, and system geomorphology. Our results show that changes in reef-water carbonate chemistry depend primarily on the ratio of benthic metabolism to the square root of the onshore wave energy flux as well as on the length and depth of the reef flat; however, they are only weakly dependent on channel geometry and the total frictional resistance of the reef system. Diurnal variations in pCO(2), pH, and aragonite saturation state (Ω(ar)) are primarily dependent on changes in net production and are relatively insensitive to changes in net calcification; however, net changes in pCO(2), pH, and Ω(ar) are more strongly influenced by net calcification when averaged over 24 hours. We also demonstrate that a relatively simple one-dimensional analytical model can provide a good description of the functional dependence of reef-water carbonate chemistry on benthic metabolism, wave forcing, sea level, reef flat morphology, and total system frictional resistance. Importantly, our results indicate that any long-term (weeks to months) net offsets in reef-water pCO(2) relative to offshore values should be modest for reef systems with narrow and/or deep lagoons. Thus, the long-term evolution of water column pCO(2) in many reef environments remains intimately connected to the regional-scale oceanography of offshore waters and hence directly influenced by rapid anthropogenically driven increases in pCO(2).

Observation of coral reefs on Ishigaki Island, Japan, using Landsat TM images and aerial photographs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsunaga, Tsuneo; Kayanne, Hajime

1997-06-01

Ishigaki Island is located at the southwestern end of Japanese Islands and famous for its fringing coral reefs. More than twenty LANDSAT TM images in twelve years and aerial photographs taken on 1977 and 1994 were used to survey two shallow reefs on this island, Shiraho and Kabira. Intensive field surveys were also conducted in 1995. All satellite images of Shiraho were geometrically corrected and overlaid to construct a multi-date satellite data set. The effects of solar elevation and tide on satellite imagery were studied with this data set. The comparison of aerial and satellite images indicated that significant changesmore » occurred between 1977 and 1984 in Kabira: rapid formation in the western part and decrease in the eastern part of dark patches. The field surveys revealed that newly formed dark patches in the west contain young corals. These results suggest that remote sensing is useful for not only mapping but also monitoring of shallow coral reefs.« less

Impact of warming events on reef-scale temperature variability as captured in two Little Cayman coral Sr/Ca records

NASA Astrophysics Data System (ADS)

von Reumont, J.; Hetzinger, S.; Garbe-Schönberg, D.; Manfrino, C.; Dullo, W.-Chr.

2016-03-01

The rising temperature of the world's oceans is affecting coral reef ecosystems by increasing the frequency and severity of bleaching and mortality events. The susceptibility of corals to temperature stress varies on local and regional scales. Insights into potential controlling parameters are hampered by a lack of long term in situ data in most coral reef environments and sea surface temperature (SST) products often do not resolve reef-scale variations. Here we use 42 years (1970-2012) of coral Sr/Ca data to reconstruct seasonal- to decadal-scale SST variations in two adjacent but distinct reef environments at Little Cayman, Cayman Islands. Our results indicate that two massive Diploria strigosa corals growing in the lagoon and in the fore reef responded differently to past warming events. Coral Sr/Ca data from the shallow lagoon successfully record high summer temperatures confirmed by in situ observations (>33°C). Surprisingly, coral Sr/Ca from the deeper fore reef is strongly affected by thermal stress events, although seasonal temperature extremes and mean SSTs at this site are reduced compared to the lagoon. The shallow lagoon coral showed decadal variations in Sr/Ca, supposedly related to the modulation of lagoonal temperature through varying tidal water exchange, influenced by the 18.6 year lunar nodal cycle. Our results show that reef-scale SST variability can be much larger than suggested by satellite SST measurements. Thus, using coral SST proxy records from different reef zones combined with in situ observations will improve conservation programs that are developed to monitor and predict potential thermal stress on coral reefs.

Spectral Diversity and Regulation of Coral Fluorescence in a Mesophotic Reef Habitat in the Red Sea

PubMed Central

Eyal, Gal; Wiedenmann, Jörg; Grinblat, Mila; D’Angelo, Cecilia; Kramarsky-Winter, Esti; Treibitz, Tali; Ben-Zvi, Or; Shaked, Yonathan; Smith, Tyler B.; Harii, Saki; Denis, Vianney; Noyes, Tim; Tamir, Raz; Loya, Yossi

2015-01-01

The phenomenon of coral fluorescence in mesophotic reefs, although well described for shallow waters, remains largely unstudied. We found that representatives of many scleractinian species are brightly fluorescent at depths of 50–60 m at the Interuniversity Institute for Marine Sciences (IUI) reef in Eilat, Israel. Some of these fluorescent species have distribution maxima at mesophotic depths (40–100 m). Several individuals from these depths displayed yellow or orange-red fluorescence, the latter being essentially absent in corals from the shallowest parts of this reef. We demonstrate experimentally that in some cases the production of fluorescent pigments is independent of the exposure to light; while in others, the fluorescence signature is altered or lost when the animals are kept in darkness. Furthermore, we show that green-to-red photoconversion of fluorescent pigments mediated by short-wavelength light can occur also at depths where ultraviolet wavelengths are absent from the underwater light field. Intraspecific colour polymorphisms regarding the colour of the tissue fluorescence, common among shallow water corals, were also observed for mesophotic species. Our results suggest that fluorescent pigments in mesophotic reefs fulfil a distinct biological function and offer promising application potential for coral-reef monitoring and biomedical imaging. PMID:26107282

The Habitat of Yellow Mouth Turban Turbo Chrysostomus, Linnaeus, 1758

NASA Astrophysics Data System (ADS)

Soekendarsi, E.

2018-03-01

In general, yellow mouth turban snail Turbo chrysostomus L. 1758 was found in intertidal and coral reef area. This animal is active at night (nocturnal) and settles the coral reef-flats area to do its activity as substrate. In doing its activity, yellow mouth turban snail can be found in the depth of 50 cm until 4 m of tidal area. The adult yellow mouth turban snails are found in great number at intertidal area’s border and at coastal area of coral reef-flats. Methodology that was used in this study is visual analysis (descriptive method), and divided into two parameters which were observed, i.e. abiotic and biotic. Abiotic components that were measured are; Oxygen (ppm), pH, Water Temperature (°C), Salinity (ppm), Ammonia (mg/L), Nitrate (mg/L), Nitrite (mg/L), and Calsium Carbonat (mg/L).Whereas, biotic components that were measured are; substrates, seaweeds, other organisms, and epilithon. The observation’s result of yellow mouth turban snail’s environmental condition showed: abiotic condition of the waters consists of oxygen 3-5 ppm, seawater pH 7-8, seawater temperature 23-26°C, and the salinity of 32-33 ppm. The Habitat of yellow mouth turban snail settled the reef-flats area that is overgrown covered by seaweed Sargassum sp. as the place to do its activity.

Between-Habitat Variation of Benthic Cover, Reef Fish Assemblage and Feeding Pressure on the Benthos at the Only Atoll in South Atlantic: Rocas Atoll, NE Brazil

PubMed Central

Longo, G. O.; Morais, R. A.; Martins, C. D. L.; Mendes, T. C.; Aued, A. W.; Cândido, D. V.; de Oliveira, J. C.; Nunes, L. T.; Fontoura, L.; Sissini, M. N.; Teschima, M. M.; Silva, M. B.; Ramlov, F.; Gouvea, L. P.; Ferreira, C. E. L.; Segal, B.; Horta, P. A.; Floeter, S. R.

2015-01-01

The Southwestern Atlantic harbors unique and relatively understudied reef systems, including the only atoll in South Atlantic: Rocas atoll. Located 230 km off the NE Brazilian coast, Rocas is formed by coralline red algae and vermetid mollusks, and is potentially one of the most “pristine” areas in Southwestern Atlantic. We provide the first comprehensive and integrative description of the fish and benthic communities inhabiting different shallow reef habitats of Rocas. We studied two contrasting tide pool habitats: open pools, which communicate with the open ocean even during low tides, thus more exposed to wave action; and closed pools, which remain isolated during low tide and are comparatively less exposed. Reef fish assemblages, benthic cover, algal turfs and fish feeding pressure on the benthos remarkably varied between open and closed pools. The planktivore Thalassoma noronhanum was the most abundant fish species in both habitats. In terms of biomass, the lemon shark Negaprion brevirostris and the omnivore Melichtys niger were dominant in open pools, while herbivorous fishes (mainly Acanthurus spp.) prevailed in closed pools. Overall benthic cover was dominated by algal turfs, composed of articulated calcareous algae in open pools and non-calcified algae in closed pools. Feeding pressure was dominated by acanthurids and was 10-fold lower in open pools than in closed pools. Besides different wave exposure conditions, such pattern could also be related to the presence of sharks in open pools, prompting herbivorous fish to feed more in closed pools. This might indirectly affect the structure of reef fish assemblages and benthic communities. The macroalgae Digenea simplex, which is uncommon in closed pools and abundant in the reef flat, was highly preferred in herbivory assays, indicating that herbivory by fishes might be shaping this distribution pattern. The variations in benthic and reef fish communities, and feeding pressure on the benthos between open and closed pools suggest that the dynamics in open pools is mostly driven by physical factors and the tolerance of organisms to harsh conditions, while in closed pools direct and indirect effects of species interactions also play an important role. Understanding the mechanisms shaping biological communities and how they scale-up to ecosystem functioning is particularly important on isolated near-pristine systems where natural processes can still be studied under limited human impact. PMID:26061735

Between-Habitat Variation of Benthic Cover, Reef Fish Assemblage and Feeding Pressure on the Benthos at the Only Atoll in South Atlantic: Rocas Atoll, NE Brazil.

PubMed

Longo, G O; Morais, R A; Martins, C D L; Mendes, T C; Aued, A W; Cândido, D V; de Oliveira, J C; Nunes, L T; Fontoura, L; Sissini, M N; Teschima, M M; Silva, M B; Ramlov, F; Gouvea, L P; Ferreira, C E L; Segal, B; Horta, P A; Floeter, S R

2015-01-01

The Southwestern Atlantic harbors unique and relatively understudied reef systems, including the only atoll in South Atlantic: Rocas atoll. Located 230 km off the NE Brazilian coast, Rocas is formed by coralline red algae and vermetid mollusks, and is potentially one of the most "pristine" areas in Southwestern Atlantic. We provide the first comprehensive and integrative description of the fish and benthic communities inhabiting different shallow reef habitats of Rocas. We studied two contrasting tide pool habitats: open pools, which communicate with the open ocean even during low tides, thus more exposed to wave action; and closed pools, which remain isolated during low tide and are comparatively less exposed. Reef fish assemblages, benthic cover, algal turfs and fish feeding pressure on the benthos remarkably varied between open and closed pools. The planktivore Thalassoma noronhanum was the most abundant fish species in both habitats. In terms of biomass, the lemon shark Negaprion brevirostris and the omnivore Melichtys niger were dominant in open pools, while herbivorous fishes (mainly Acanthurus spp.) prevailed in closed pools. Overall benthic cover was dominated by algal turfs, composed of articulated calcareous algae in open pools and non-calcified algae in closed pools. Feeding pressure was dominated by acanthurids and was 10-fold lower in open pools than in closed pools. Besides different wave exposure conditions, such pattern could also be related to the presence of sharks in open pools, prompting herbivorous fish to feed more in closed pools. This might indirectly affect the structure of reef fish assemblages and benthic communities. The macroalgae Digenea simplex, which is uncommon in closed pools and abundant in the reef flat, was highly preferred in herbivory assays, indicating that herbivory by fishes might be shaping this distribution pattern. The variations in benthic and reef fish communities, and feeding pressure on the benthos between open and closed pools suggest that the dynamics in open pools is mostly driven by physical factors and the tolerance of organisms to harsh conditions, while in closed pools direct and indirect effects of species interactions also play an important role. Understanding the mechanisms shaping biological communities and how they scale-up to ecosystem functioning is particularly important on isolated near-pristine systems where natural processes can still be studied under limited human impact.

Seven new species of the genus Xestoleberis (Ostracoda: Podocopida: Cytheroidea) from the Fiji Archipelago.

PubMed

Chand, Prerna; Kamiya, Takahiro

2016-12-18

The genus Xestoleberis has a global distribution, and although they are predominant in shallow marine environments adapted to both sediment and algal habitats, only two species of this genus, Xestoleberis curta (Brady, 1866) and Xestoleberis variegata Brady, 1880, have previously been reported from the Fiji archipelago. Herein we report seven new species of the genus Xestoleberis from intertidal environments of fringing reef flats of the Fiji Islands: Xestoleberis becca n. sp., Xestoleberis concava n. sp., Xestoleberis gracilariaii n. sp., Xestoleberis marcula n. sp., Xestoleberis natuvuensis n. sp., Xestoleberis penna n. sp. and Xestoleberis petrosa n. sp. With the exception of X. becca n. sp., Xestoleberis species show restricted distribution within Fijian waters. The possible causes for their distribution patterns are suggested to be physical barriers imposed by the fast flowing Bligh Water currents, and islands separated by deep ocean waters.

Virus-host interactions and their roles in coral reef health and disease.

PubMed

Thurber, Rebecca Vega; Payet, Jérôme P; Thurber, Andrew R; Correa, Adrienne M S

2017-04-01

Coral reefs occur in nutrient-poor shallow waters, constitute biodiversity and productivity hotspots, and are threatened by anthropogenic disturbance. This Review provides an introduction to coral reef virology and emphasizes the links between viruses, coral mortality and reef ecosystem decline. We describe the distinctive benthic-associated and water-column- associated viromes that are unique to coral reefs, which have received less attention than viruses in open-ocean systems. We hypothesize that viruses of bacteria and eukaryotes dynamically interact with their hosts in the water column and with scleractinian (stony) corals to influence microbial community dynamics, coral bleaching and disease, and reef biogeochemical cycling. Last, we outline how marine viruses are an integral part of the reef system and suggest that the influence of viruses on reef function is an essential component of these globally important environments.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scott, R.W.; Fernandez-Mendiola, P.A.; Gili, E.

During the Early Cretaceous, coral-algal communities occupied deeper water habitats in the reef ecosystem, and rudist communities generally populated the shallow-water, carbonate-sand substrates. During the middle Cretaceous, however, coral-algal communities became less common, and Late Cretaceous reef communities consisted of both rudist-dominated and rudist-coral communities. In the Pyrenean basins and other basins in the Mediterranean, coral associations co-existed with rudists forming complex buildups at the shelf-edge. In some parts of these buildups corals were nearly as abundant as rudists; in some complex buildups large coral colonies encrusted the rudists. Behind the shelf margin cylindrical, elevator rudists dominated the lenticular thicketsmore » that were interspersed with carbonate sands. Global changes in oceanic conditions, such as marine productivity and oxygen content, may have stressed the deeper coral-algal reef communities leaving rudists as the major shallow reef biota in Caribbean reefs. However, the co-occurrence of corals with rudists in these Pyrenean complex buildups suggests that corals were able to compete with rudists for resources. The corals in the complex buildups generally belong to genera different from those in the coral-algal communities. Perhaps this ecological stress in the mid-Cretaceous resulted in the evolution of new coral taxa.« less

Rapid fluctuations in flow and water-column properties in Asan Bay, Guam: implications for selective resilience of coral reefs in warming seas

USGS Publications Warehouse

Storlazzi, Curt D.; Field, Michael E.; Cheriton, Olivia M.; Presto, M.K.; Logan, J.B.

2013-01-01

Hydrodynamics and water-column properties were investigated off west-central Guam from July 2007 through January 2008. Rapid fluctuations, on time scales of 10s of min, in currents, temperature, salinity, and acoustic backscatter were observed to occur on sub-diurnal frequencies along more than 2 km of the fore reef but not at the reef crest. During periods characterized by higher sea-surface temperatures (SSTs), weaker wind forcing, smaller ocean surface waves, and greater thermal stratification, rapid decreases in temperature and concurrent rapid increases in salinity and acoustic backscatter coincided with onshore-directed near-bed currents and offshore-directed near-surface currents. During the study, these cool-water events, on average, lasted 2.3 h and decreased the water temperature 0.57 °C, increased the salinity 0.25 PSU, and were two orders of magnitude more prevalent during the summer season than the winter. During the summer season when the average satellite-derived SST anomaly was +0.63 °C, these cooling events, on average, lowered the temperature 1.14 °C along the fore reef but only 0.11 °C along the reef crest. The rapid shifts appear to be the result of internal tidal bores pumping cooler, more saline, higher-backscatter oceanic water from depths >50 m over cross-shore distances of 100 s of m into the warmer, less saline waters at depths of 20 m and shallower. Such internal bores appear to have the potential to buffer shallow coral reefs from predicted increases in SSTs by bringing cool, offshore water to shallow coral environments. These cooling internal bores may also provide additional benefits to offset stress such as supplying food to thermally stressed corals, reducing stress due to ultraviolet radiation and/or low salinity, and delivering coral larvae from deeper reefs not impacted by surface thermal stress. Thus, the presence of internal bores might be an important factor locally in the resilience of select coral reefs facing increased thermal stress.

Rapid fluctuations in flow and water-column properties in Asan Bay, Guam: implications for selective resilience of coral reefs in warming seas

NASA Astrophysics Data System (ADS)

Storlazzi, C. D.; Field, M. E.; Cheriton, O. M.; Presto, M. K.; Logan, J. B.

2013-12-01

Hydrodynamics and water-column properties were investigated off west-central Guam from July 2007 through January 2008. Rapid fluctuations, on time scales of 10s of min, in currents, temperature, salinity, and acoustic backscatter were observed to occur on sub-diurnal frequencies along more than 2 km of the fore reef but not at the reef crest. During periods characterized by higher sea-surface temperatures (SSTs), weaker wind forcing, smaller ocean surface waves, and greater thermal stratification, rapid decreases in temperature and concurrent rapid increases in salinity and acoustic backscatter coincided with onshore-directed near-bed currents and offshore-directed near-surface currents. During the study, these cool-water events, on average, lasted 2.3 h and decreased the water temperature 0.57 °C, increased the salinity 0.25 PSU, and were two orders of magnitude more prevalent during the summer season than the winter. During the summer season when the average satellite-derived SST anomaly was +0.63 °C, these cooling events, on average, lowered the temperature 1.14 °C along the fore reef but only 0.11 °C along the reef crest. The rapid shifts appear to be the result of internal tidal bores pumping cooler, more saline, higher-backscatter oceanic water from depths >50 m over cross-shore distances of 100 s of m into the warmer, less saline waters at depths of 20 m and shallower. Such internal bores appear to have the potential to buffer shallow coral reefs from predicted increases in SSTs by bringing cool, offshore water to shallow coral environments. These cooling internal bores may also provide additional benefits to offset stress such as supplying food to thermally stressed corals, reducing stress due to ultraviolet radiation and/or low salinity, and delivering coral larvae from deeper reefs not impacted by surface thermal stress. Thus, the presence of internal bores might be an important factor locally in the resilience of select coral reefs facing increased thermal stress.

Evaluating Environmental Effects of Dredged Material Management Alternatives: A Technical Framework

DTIC Science & Technology

1992-11-01

fluctuating flows and tamperatures would be difficult. Biological processes such as nitrification, nutrient catabolism, and photosynthesis are important...communities as tidal flats, seagrass meadows, oyster beds, clam flats, fishing reefs, and freshwater aquatic plant establishment. The bottom of many

Diverse Staghorn Coral Fauna on the Mesophotic Reefs of North-East Australia

PubMed Central

Muir, Paul; Wallace, Carden; Bridge, Tom C. L.; Bongaerts, Pim

2015-01-01

Concern for the future of reef-building corals in conditions of rising sea temperatures combined with recent technological advances has led to a renewed interest in documenting the biodiversity of mesophotic coral ecosystems (MCEs) and their potential to provide lineage continuation for coral taxa. Here, we examine species diversity of staghorn corals (genera Acropora and Isopora) in the mesophotic zone (below 30 m depth) of the Great Barrier Reef and western Coral Sea. Using specimen-based records we found 38 staghorn species in the mesophotic zone, including three species newly recorded for Australia and five species that only occurred below 30 m. Staghorn corals became scarce at depths below 50 m but were found growing in-situ to 73 m depth. Of the 76 staghorn coral species recorded for shallow waters (depth ≤ 30 m) in north-east Australia, 21% extended to mesophotic depths with a further 22% recorded only rarely to 40 m depth. Extending into the mesophotic zone provided shallow water species no significant advantage in terms of their estimated global range-size relative to species restricted to shallow waters (means 86.2 X 106 km2 and 85.7 X 106 km2 respectively, p = 0.98). We found four staghorn coral species at mesophotic depths on the Great Barrier Reef that were previously considered rare and endangered on the basis of their limited distribution in central Indonesia and the far western Pacific. Colonies below 40 m depth showed laterally flattened branches, light and fragile skeletal structure and increased spacing between branches and corallites. The morphological changes are discussed in relation to decreased light, water movement and down-welling coarse sediments. Staghorn corals have long been regarded as typical shallow-water genera, but here we demonstrate the significant contribution of this group to the region’s mesophotic fauna and the importance of considering MCEs in reef biodiversity estimates and management. PMID:25714341

Diverse staghorn coral fauna on the mesophotic reefs of north-east Australia.

PubMed

Muir, Paul; Wallace, Carden; Bridge, Tom C L; Bongaerts, Pim

2015-01-01

Concern for the future of reef-building corals in conditions of rising sea temperatures combined with recent technological advances has led to a renewed interest in documenting the biodiversity of mesophotic coral ecosystems (MCEs) and their potential to provide lineage continuation for coral taxa. Here, we examine species diversity of staghorn corals (genera Acropora and Isopora) in the mesophotic zone (below 30 m depth) of the Great Barrier Reef and western Coral Sea. Using specimen-based records we found 38 staghorn species in the mesophotic zone, including three species newly recorded for Australia and five species that only occurred below 30 m. Staghorn corals became scarce at depths below 50 m but were found growing in-situ to 73 m depth. Of the 76 staghorn coral species recorded for shallow waters (depth ≤ 30 m) in north-east Australia, 21% extended to mesophotic depths with a further 22% recorded only rarely to 40 m depth. Extending into the mesophotic zone provided shallow water species no significant advantage in terms of their estimated global range-size relative to species restricted to shallow waters (means 86.2 X 10(6) km2 and 85.7 X 10(6) km2 respectively, p = 0.98). We found four staghorn coral species at mesophotic depths on the Great Barrier Reef that were previously considered rare and endangered on the basis of their limited distribution in central Indonesia and the far western Pacific. Colonies below 40 m depth showed laterally flattened branches, light and fragile skeletal structure and increased spacing between branches and corallites. The morphological changes are discussed in relation to decreased light, water movement and down-welling coarse sediments. Staghorn corals have long been regarded as typical shallow-water genera, but here we demonstrate the significant contribution of this group to the region's mesophotic fauna and the importance of considering MCEs in reef biodiversity estimates and management.

Estimating Surface Area of Sponges and Marine Gorgonians as Indicators of Habitat Availability on Caribbean Coral Reefs

EPA Science Inventory

Surface area and topographical complexity are fundamental attributes of shallow tropical coral reefs and can be used to estimate habitat for fish and invertebrates. This study presents empirical methods for estimating surface area provided by sponges and gorgonians in the Central...

INFLUENCE OF LIGHT ON BACTERIOPLANKTON PRODUCTION AND RESPIRATION IN A SUBTROPICAL CORAL REEF

EPA Science Inventory

The influence of sunlight on bacterioplankton production (14C-leucine (Leu) and 3H-thymidine (TdR) incorporation; changes in cell abundances) and O2 consumption was investigated in a shallow subtropical coral reef located near Key Largo, Florida. Quartz (light) and opaque (dark) ...

Heavy metal contamination from gold mining recorded in Porites lobata skeletons, Buyat-Ratototok district, North Sulawesi, Indonesia.

PubMed

Edinger, Evan N; Azmy, Karem; Diegor, Wilfredo; Siregar, P Raja

2008-09-01

Shallow marine sediments and fringing coral reefs of the Buyat-Ratototok district of North Sulawesi, Indonesia, are affected by submarine disposal of tailings from industrial gold mining and by small-scale gold mining using mercury amalgamation. Between-site variation in heavy metal concentrations in shallow marine sediments was partially reflected by trace element concentrations in reef coral skeletons from adjacent reefs. Corals skeletons recorded silicon, manganese, iron, copper, chromium, cobalt, antimony, thallium, and lead in different concentrations according to proximity to sources, but arsenic concentrations in corals were not significantly different among sites. Temporal analysis found that peak concentrations of arsenic and chromium generally coincided with peak concentrations of silica and/or copper, suggesting that most trace elements in the coral skeleton were incorporated into detrital siliciclastic sediments, rather than impurities within skeletal aragonite.

Ocean Exploration and Drug Discovery in the Twilight Zone

NASA Astrophysics Data System (ADS)

Slattery, M.; Gochfeld, D.; Lesser, M.

2006-12-01

The transition between shallow coral reef communities and aphotic deep-water communities in the tropics (= 50m to 150m) is often called the "twilight zone", and it is characterized by reduced light and consequently photosynthesis. But while reef-building coral diversity decreases with increasing depth, many sponges, soft corals, and even low-light acclimatized primary producers are abundant. Thus, this is a zone of potentially incredible ecological significance, unique biodiversity, and unusual physiological adaptations where one might expect to find important natural products that might be used as pharmaceuticals or other biotechnology products. This is also one of the least studied ecosystems in the marine environment since it exceeds the limits of traditional SCUBA, but is considered too shallow to warrant costly submersible time. We have examined the Twilight Zone off the Exuma Sound Shelf, Bahamas, over the last three years using technical mixed gas diving. Biodiversity data indicate a rich sponge community consisting of 92 species and approximately 15% endemism. Sponge diversity and density increased with depth as picoplankton food abundance increased. Sponges were also larger and faster growing at depth than in shallow-water conspecific populations. This unique biodiversity represents an important biotechnological resource as well; two thirds of the sponges exhibit promising biomedical activity compared to less than one third of the shallow reef sponge species. In addition, 5 of 7 species that co-occur at shallow and deep sites exhibited greater bioactivity due to quantitative and qualitative differences in the natural products produced in each depth range.

Vertical and horizontal genetic connectivity in Chromis verater, an endemic damselfish found on shallow and mesophotic reefs in the Hawaiian Archipelago and adjacent Johnston Atoll.

PubMed

Tenggardjaja, Kimberly A; Bowen, Brian W; Bernardi, Giacomo

2014-01-01

Understanding vertical and horizontal connectivity is a major priority in research on mesophotic coral ecosystems (30-150 m). However, horizontal connectivity has been the focus of few studies, and data on vertical connectivity are limited to sessile benthic mesophotic organisms. Here we present patterns of vertical and horizontal connectivity in the Hawaiian Islands-Johnston Atoll endemic threespot damselfish, Chromis verater, based on 319 shallow specimens and 153 deep specimens. The mtDNA markers cytochrome b and control region were sequenced to analyze genetic structure: 1) between shallow (< 30 m) and mesophotic (30-150 m) populations and 2) across the species' geographic range. Additionally, the nuclear markers rhodopsin and internal transcribed spacer 2 of ribosomal DNA were sequenced to assess connectivity between shallow and mesophotic populations. There was no significant genetic differentiation by depth, indicating high levels of vertical connectivity between shallow and deep aggregates of C. verater. Consequently, shallow and deep samples were combined by location for analyses of horizontal connectivity. We detected low but significant population structure across the Hawaiian Archipelago (overall cytochrome b: ΦST = 0.009, P = 0.020; control region: ΦST = 0.012, P = 0.009) and a larger break between the archipelago and Johnston Atoll (cytochrome b: ΦST = 0.068, P < 0.001; control region: ΦST = 0.116, P < 0.001). The population structure within the archipelago was driven by samples from the island of Hawaii at the southeast end of the chain and Lisianski in the middle of the archipelago. The lack of vertical genetic structure supports the refugia hypothesis that deep reefs may constitute a population reservoir for species depleted in shallow reef habitats. These findings represent the first connectivity study on a mobile organism that spans shallow and mesophotic depths and provide a reference point for future connectivity studies on mesophotic fishes.

Vertical and Horizontal Genetic Connectivity in Chromis verater, an Endemic Damselfish Found on Shallow and Mesophotic Reefs in the Hawaiian Archipelago and Adjacent Johnston Atoll

PubMed Central

Tenggardjaja, Kimberly A.; Bowen, Brian W.; Bernardi, Giacomo

2014-01-01

Understanding vertical and horizontal connectivity is a major priority in research on mesophotic coral ecosystems (30–150 m). However, horizontal connectivity has been the focus of few studies, and data on vertical connectivity are limited to sessile benthic mesophotic organisms. Here we present patterns of vertical and horizontal connectivity in the Hawaiian Islands-Johnston Atoll endemic threespot damselfish, Chromis verater, based on 319 shallow specimens and 153 deep specimens. The mtDNA markers cytochrome b and control region were sequenced to analyze genetic structure: 1) between shallow (<30 m) and mesophotic (30–150 m) populations and 2) across the species' geographic range. Additionally, the nuclear markers rhodopsin and internal transcribed spacer 2 of ribosomal DNA were sequenced to assess connectivity between shallow and mesophotic populations. There was no significant genetic differentiation by depth, indicating high levels of vertical connectivity between shallow and deep aggregates of C. verater. Consequently, shallow and deep samples were combined by location for analyses of horizontal connectivity. We detected low but significant population structure across the Hawaiian Archipelago (overall cytochrome b: ΦST = 0.009, P = 0.020; control region: ΦST = 0.012, P = 0.009) and a larger break between the archipelago and Johnston Atoll (cytochrome b: ΦST = 0.068, P<0.001; control region: ΦST = 0.116, P<0.001). The population structure within the archipelago was driven by samples from the island of Hawaii at the southeast end of the chain and Lisianski in the middle of the archipelago. The lack of vertical genetic structure supports the refugia hypothesis that deep reefs may constitute a population reservoir for species depleted in shallow reef habitats. These findings represent the first connectivity study on a mobile organism that spans shallow and mesophotic depths and provide a reference point for future connectivity studies on mesophotic fishes. PMID:25517964

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kayanne, Hajime; Suzuki, Atsushi; Saito, Hiroshi

Coral reefs are considered to be a source of atmospheric carbon dioxide because of their high calcium carbonate production and low net primary production. This was tested by direct measurement of diurnal changes in the partial pressure of carbon dioxide (P{sub CO2}) in reef waters during two 3-day periods, one in March 1993 and one in March 1994, on Shiraho reef of the Ryukyu Islands, Japan. Although the P{sub CO2} values in reef waters exhibited large diurnal changes ranging from 160 to 520 microatmospheres, they indicate that the reef flat area is a net sink for atmospheric carbon dioxide. Thismore » suggests that the net organic production rate of the reef community exceeded its calcium carbonate production rate during the observation periods. 16 refs., 2 figs., 1 tab.« less

Final Environmental Assessment for Minuteman III Modification

DTIC Science & Technology

2004-12-30

the ocean floor. FONSI-3 At USAKA, target sites for test RVs are located in the deep ocean area east of the Kwajalein reef or in the vicinity...an RV impacts directly on Illeginni Island or in the shallow coral reefs of Kwajalein Atoll, a crater will form. Post-test debris recovery and... coral reef habitat. The USAF has projected that approximately four to five RVs will impact at Illeginni over the next 20 years. The overall effects

O2-MAVS: an Instrument for Measuring Oxygen Flux

DTIC Science & Technology

2010-06-01

al. (2007), “ Coral reefs under rapid climate change and ocean acidification ,” Science 318:1737-1742 [20] K.R.N. Anthony, D.I. Kline, S. Dove, and...O. Hoegh-Guldberg (2008), “ Ocean acidification causes bleaching and productivity loss in coral reef builders,” Proc. Nat. Acad. of Sci. 105:doi...deployments were made on shallow, warm-water coral reefs in La Parguera, Puerto Rico. Time series of net production obtained using the boundary

Book review of Littler DM. Littler MM (2000) Caribbean Reef Plants An Identification Guide to the Reef Plants of the Caribbean, Bahamas, Florida and Gulf of Mexico

NASA Astrophysics Data System (ADS)

Zuschin, M.; Hohenegger, J.; Steininger, F.

2001-09-01

Information on spatial variability and distribution patterns of organisms in coral reef environments is necessary to evaluate the increasing anthropogenic disturbance of marine environments (Richmond 1993; Wilkinson 1993; Dayton 1994). Therefore different types of subtidal, reef-associated hard substrata (reef flats, reef slopes, coral carpets, coral patches, rock grounds), each with different coral associations, were investigated to determine the distribution pattern of molluscs and their life habits (feeding strategies and substrate relations). The molluscs were strongly dominated by taxa with distinct relations to corals, and five assemblages were differentiated. The Dendropoma maxima assemblage on reef flats is a discrete entity, strongly dominated by this encrusting and suspension-feeding gastropod. All other assemblages are arranged along a substrate gradient of changing coral associations and potential molluscan habitats. The Coralliophila neritoidea- Barbatia foliata assemblage depends on the presence of Porites and shows a dominance of gastropods feeding on corals and of bivalves associated with living corals. The Chamoidea- Cerithium spp. assemblage on rock grounds is strongly dominated by encrusting bivalves. The Drupella cornus-Pteriidae assemblage occurs on Millepora- Acropora reef slopes and is strongly dominated by bivalves associated with living corals. The Barbatia setigera- Ctenoides annulata assemblage includes a broad variety of taxa, molluscan life habits and bottom types, but occurs mainly on faviid carpets and is transitional among the other three assemblages. A predicted degradation of coral coverage to rock bottoms due to increasing eutrophication and physical damage in the study area (Riegl and Piller 2000) will result in a loss of coral-associated molluscs in favor of bivalve crevice dwellers in dead coral heads and of encrusters on dead hard substrata.

Morphological plasticity of the depth generalist coral, Montastraea cavernosa, on mesophotic reefs in Bermuda.

PubMed

Goodbody-Gringley, Gretchen; Waletich, Justin

2018-04-02

Scleractinian corals have global ecological, structural, social, and economic importance that is disproportionately large relative to their areal extent. These reef building corals form the architectural framework for shallow water tropical reef systems, supporting the most productive and biologically diverse marine ecosystems on Earth (Veron, 1995). Reef-building scleractinian species are dependent on photosynthetic products supplied by symbiotic zooxanthellae of the genus Symbiodinium, restricting their distribution to the photic zone (Stambler, 2011). This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

UPWELLING EVENT IN THE DRY TORTUGAS DURING MAY 1998

EPA Science Inventory

A major macro-algae bloom was observed during a coral disease survey in May 1998 in the Dry Tortugas and New Grounds region. The significant algal growth was found only on the outer slope of reefs in depths greater than 25'; the algal bloom was not present on shallow reefs. The a...

Critical bifurcation of shallow microtidal landforms in tidal flats and salt marshes

PubMed Central

Fagherazzi, Sergio; Carniello, Luca; D'Alpaos, Luigi; Defina, Andrea

2006-01-01

Shallow tidal basins are characterized by extensive tidal flats and salt marshes that lie within specific ranges of elevation, whereas intermediate elevations are less frequent in intertidal landscapes. Here we show that this bimodal distribution of elevations stems from the characteristics of wave-induced sediment resuspension and, in particular, from the reduction of maximum wave height caused by dissipative processes in shallow waters. The conceptual model presented herein is applied to the Venice Lagoon, Italy, and demonstrates that areas at intermediate elevations are inherently unstable and tend to become either tidal flats or salt marshes. PMID:16707583

The big squeeze: ecosystem change and contraction of habitat for newly discovered deep-water reefs off the U.S. West Coast

NASA Astrophysics Data System (ADS)

Wickes, L.; Etnoyer, P. J.; Lauermann, A.; Rosen, D.

2016-02-01

Cold-water reefs are fragile, complex ecosystems that extend into the bathyal depths of the ocean, creating three dimensional structure and habitat for a diversity of deep-water invertebrates and fishes. The cold waters of the California Current support a diverse assemblage of these corals at relatively shallow depths close to shore. At these depths and locations the communities face a multitude of stressors, including low carbonate saturations, hypoxia, changing temperature, and coastal pollution. The current study employed ROV surveys (n=588, 2003-2015) to document the distribution of deep-sea corals in the Southern California Bight, including the first description of a widespread reef-building coral in the naturally acidified waters off the U.S. West Coast. We provide empirical evidence of species survival in the corrosive waters (Ωarag 0.67-1.86), but find loss of reef integrity. Recent publications have implied acclimation, resistance, and resilience of cold-water reef-building corals to ocean acidification, but results of this study indicate a cost to skeletal framework development with a subsequent loss of coral habitat. While ocean acidification and declines in oxygen are expected to further impinge on Lophelia at depth (𝑥̅=190 m), surface warming and coastal polution may affect shallower populations and mesophotic reef assemblages, resulting in a contraction of available coral habitat. Recent observations of die offs of gorgonians and antipatharians from surveys in shallow (50 m) and deep water (500 m) provide compelling evidence of ongoing ecosystem changes. Concurrent losses in habitat quality in deep and mesophotic waters suggest that corals may be "squeezed" into a more restricted depth range. New monitoring efforts aim to characterize the health and condition of deep corals with respect to gradients in carbonate chemistry, coastal pollution and changing temperatures, to assess vulnerability and both current and future habitat suitability.

Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats

PubMed Central

2011-01-01

Background Divergent natural selection across environmental gradients has been acknowledged as a major driver of population and species divergence, however its role in the diversification of scleractinian corals remains poorly understood. Recently, it was demonstrated that the brooding coral Seriatopora hystrix and its algal endosymbionts (Symbiodinium) are genetically partitioned across reef environments (0-30 m) on the far northern Great Barrier Reef. Here, we explore the potential mechanisms underlying this differentiation and assess the stability of host-symbiont associations through a reciprocal transplantation experiment across habitats ('Back Reef', 'Upper Slope' and 'Deep Slope'), in combination with molecular (mtDNA and ITS2-DGGE) and photo-physiological analyses (respirometry and HPLC). Results The highest survival rates were observed for native transplants (measured 14 months after transplantation), indicating differential selective pressures between habitats. Host-symbiont assemblages remained stable during the experimental duration, demonstrating that the ability to "shuffle" or "switch" symbionts is restricted in S. hystrix. Photo-physiological differences were observed between transplants originating from the shallow and deep habitats, with indirect evidence of an increased heterotrophic capacity in native deep-water transplants (from the 'Deep Slope' habitat). Similar photo-acclimatisation potential was observed between transplants originating from the two shallow habitats ('Back Reef' and 'Upper Slope'), highlighting that their genetic segregation over depth may be due to other, non-photo-physiological traits under selection. Conclusions This study confirms that the observed habitat partitioning of S. hystrix (and associated Symbiodinium) is reflective of adaptive divergence along a depth gradient. Gene flow appears to be reduced due to divergent selection, highlighting the potential role of ecological mechanisms, in addition to physical dispersal barriers, in the diversification of scleractinian corals and their associated Symbiodinium. PMID:22004364

Importance of benthic prey for fishes in coral reef-associated sediments

USGS Publications Warehouse

DeFelice, R.C.; Parrish, J.D.

2003-01-01

The importance of open, sandy substrate adjacent to coral reefs as habitat and a food source for fishes has been little studied in most shallow tropical waters in the Pacific, including Hawai'i. In this study, in Hanalei Bay, Hiwai'i, we identified and quantified the major invertebrate fauna (larger than 0.5 mm) in the well-characterized sands adjoining the shallow fringing reefs. Concurrently, we identified the fish species that seemed to make substantial use of these sand habitats, estimated their density there, sampled their gut contents to examine trophic links with the sand habitat, and made other observations and collections to determine the times, locations, and types of activity there. A variety of (mostly small) polychaeres were dominant in the sediments at most sampling stations, along with many small crustaceans (e.g., amphipods, isopods, ostracods, and small shrimps) and fair numbers of mollusks (especially bivalves) and small echinoids. Fish guts examined contained ???77% of the total number of benthic taxa collected, including nearly all those just listed. However, fish consumption was selective, and the larger shrimps, crabs, and small cryptic fishes were dominant in the diets of most of the numerous predator taxa. Diets of benthic-feeding fishes showed relatively low specific overlap. The fish fauna in this area included substrate-indifferent pelagics, species with various degrees of reef relatedness, reef-restricted species, and (at the other extreme) permanent cryptic sand dwellers. Data on occurrence and movements of fishes indicated that a band of sandy substrate several tens of meters wide next to the reef was an active area for fishes, and activity was considerably different at different times of day and for fish of different ages. These results imply an important trophic role for the benthos in these near-reef habitats in support of reef-associated fishes.

Influences of wind-wave exposure on the distribution and density of recruit reef fishes at Kure and Pearl and Hermes Atolls, Northwestern Hawaiian Islands

USGS Publications Warehouse

DeMartini, E.E.; Zgliczynski, B.J.; Boland, R.C.; Friedlander, A.M.

2009-01-01

This paper describes the results of a field survey designed to test the prediction that the density of benthic juveniles of shallow-reef fishes is greater on wind-wave "exposed" sectors of a pair of isolated oceanic atolls (Kure, Pearl and Hermes) at the far northwestern end of the Hawaiian Islands, an archipelago in which east-northeasterly trade winds dominate onshore water flow and transport by surface currents. The densities of recruits (juveniles ???5 cm total length) were higher overall on windward versus leeward sectors of carbonate rock-rubble back reefs at both atolls, and the pattern was stronger for smaller (likely younger, more recently settled) recruits of four of the five most abundant species and the remainder pooled as an "Other" taxon. The windward-leeward disparity was four-fold greater at Pearl Hermes (the atoll with a three-fold longer perimeter) than at Kure. Resident predator biomass also was correlated with recruit densities, but habitat (benthic substratum) effects were generally weak. The distribution and abundance of recruits and juveniles of the primarily endemic reef fishes on shallow back reefs at these atolls appear partly influenced by relative rates of water flow over windward vs. leeward sectors of barrier reef and by the size, shape, and orientation of habitat parcels that filter out postlarval fishes with relatively weak swimming capabilities like labroids. Whole-reef geomorphology as well as fine-scale habitat heterogeneity and rugosity should be considered among the suite of many factors used to interpret observed spatial patterns of post-settlement juvenile fish distribution at atolls and perhaps some other tropical reefs. ?? The Author(s) 2009.

Keep up or drown: adjustment of western Pacific coral reefs to sea-level rise in the 21st century

PubMed Central

van Woesik, R.; Golbuu, Y.; Roff, G.

2015-01-01

Since the Mid-Holocene, some 5000 years ago, coral reefs in the Pacific Ocean have been vertically constrained by sea level. Contemporary sea-level rise is releasing these constraints, providing accommodation space for vertical reef expansion. Here, we show that Porites microatolls, from reef-flat environments in Palau (western Pacific Ocean), are ‘keeping up’ with contemporary sea-level rise. Measurements of 570 reef-flat Porites microatolls at 10 locations around Palau revealed recent vertical skeletal extension (78±13 mm) over the last 6–8 years, which is consistent with the timing of the recent increase in sea level. We modelled whether microatoll growth rates will potentially ‘keep up’ with predicted sea-level rise in the near future, based upon average growth, and assuming a decline in growth for every 1°C increase in temperature. We then compared these estimated extension rates with rates of sea-level rise under four Representative Concentration Pathways (RCPs). Our model suggests that under low–mid RCP scenarios, reef-coral growth will keep up with sea-level rise, but if greenhouse gas concentrations exceed 670 ppm atmospheric CO2 levels and with +2.2°C sea-surface temperature by 2100 (RCP 6.0 W m−2), our predictions indicate that Porites microatolls will be unable to keep up with projected rates of sea-level rise in the twenty-first century. PMID:26587277

The modern deep water coral reefs off NW-Europe: the largest reef province in the world

NASA Astrophysics Data System (ADS)

Dullo, W. C.; Freiwald, A.

2003-04-01

Recently discovered deep-water coral reefs and coral mounds in the Procupine Seabight and in the Rockall Trough are part of a North Atlantic coral reef province, stretching from the Iberian Peninsula up to northern Norway within the intermediate water-mass. Current research activities underline the significance of these coral eco-systems as a centre of extreme high biodiversity and biomass indicated by numerous economically important nurtrients for humans as well as resources for marine biochemical products. This unexpected high biological activity along continental margins, which is responsible for the formation of 100 m high biogenic mounds, creating impressive geological reliefs, portrays the complex coupling between hydrosphere and geosphere. The geological importance of these recent and living carbonate structures is underlined by the fact that this "reef type" or mud mound is a very prominent carbon hydrogen reservoir throughout earth history. Such mud mound structures cannot be compared with any other present-day shallow water reef. Our present knowledge about reefs and carbonate production is limited to the areas of the shallow shelves mainly within the tropical region. Only few studies exist from high latitudes and from the continental margin of NW Europe. Further occurences of these deep-water mounds have recently been discovered off West Africa and off SE Brasilia within the frame of exploration activities. The portion of the climate-forcing greenhouse gas CO_2, stored in these mounds during glacial and interglacial times has not been introduced into model runs and prediction scenarios so far. These mounds do not depend on glacial/interglacial sea-level changes in the same way as their shallow-water counterparts do. Deep-water coral mounds react and respond to changes in the oceanographic regime and are triggered by abrupt changes within the sedimentary environment (increased erosion of shelf sediments during low stands of sea level as well as slope instabilities). These properties of modern aphotic coral mounds provide the ideal potential for the interpretation of fossil deep-water mounds in order to study their control mechanisms and their oceanographic environment.

Development of small carbonate banks on the south Florida platform margin: Response to sea level and climate change

USGS Publications Warehouse

Mallinson, David J.; Hine, Albert C.; Hallock, Pamela; Locker, Stanley D.; Shinn, Eugene; Naar, David; Donahue, Brian; Weaver, Douglas C.

2003-01-01

Geophysical and coring data from the Dry Tortugas, Tortugas Bank, and Riley’s Hump on the southwest Florida margin reveal the stratigraphic framework and growth history of these carbonate banks. The Holocene reefs of the Dry Tortugas and Tortugas Bank are approximately 14 and 10 m thick, respectively, and are situated upon Pleistocene reefal edifices. Tortugas Bank consists of the oldest Holocene corals in the Florida Keys with earliest coral recruitment occurring at ∼9.6 cal ka. Growth curves for the Tortugas Bank reveal slow growth (<1 mm/yr) until 6.2 cal ka, then a rapid increase to 3.4 mm/yr, until shallow reef demise at ∼4.2 cal ka. Coral reef development at the Dry Tortugas began at ∼6.4 cal ka. Aggradation at the Dry Tortugas was linear, and rapid (∼3.7 mm/yr) and kept pace with sea-level change. The increase in aggradation rate of Tortugas Bank at 6.2 cal ka is attributed to the growth of the Dry Tortugas reefs, which formed a barrier to inimical shelf water. Termination of shallow (<15 m below sea level) reef growth at Tortugas Bank at ∼4.2 cal ka is attributed to paleoclimate change in the North American interior that increased precipitation and fluvial discharge. Reef growth rates and characteristics are related to the rate of sea-level rise relative to the position of the reef on the shelf margin, and are additionally modified by hydrographic conditions related to climate change.

A Bayesian-Based System to Assess Wave-Driven Flooding Hazards on Coral Reef-Lined Coasts

NASA Astrophysics Data System (ADS)

Pearson, S. G.; Storlazzi, C. D.; van Dongeren, A. R.; Tissier, M. F. S.; Reniers, A. J. H. M.

2017-12-01

Many low-elevation, coral reef-lined, tropical coasts are vulnerable to the effects of climate change, sea level rise, and wave-induced flooding. The considerable morphological diversity of these coasts and the variability of the hydrodynamic forcing that they are exposed to make predicting wave-induced flooding a challenge. A process-based wave-resolving hydrodynamic model (XBeach Non-Hydrostatic, "XBNH") was used to create a large synthetic database for use in a "Bayesian Estimator for Wave Attack in Reef Environments" (BEWARE), relating incident hydrodynamics and coral reef geomorphology to coastal flooding hazards on reef-lined coasts. Building on previous work, BEWARE improves system understanding of reef hydrodynamics by examining the intrinsic reef and extrinsic forcing factors controlling runup and flooding on reef-lined coasts. The Bayesian estimator has high predictive skill for the XBNH model outputs that are flooding indicators, and was validated for a number of available field cases. It was found that, in order to accurately predict flooding hazards, water depth over the reef flat, incident wave conditions, and reef flat width are the most essential factors, whereas other factors such as beach slope and bed friction due to the presence or absence of corals are less important. BEWARE is a potentially powerful tool for use in early warning systems or risk assessment studies, and can be used to make projections about how wave-induced flooding on coral reef-lined coasts may change due to climate change.