Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.

PubMed

Uga, Yusaku; Sugimoto, Kazuhiko; Ogawa, Satoshi; Rane, Jagadish; Ishitani, Manabu; Hara, Naho; Kitomi, Yuka; Inukai, Yoshiaki; Ono, Kazuko; Kanno, Noriko; Inoue, Haruhiko; Takehisa, Hinako; Motoyama, Ritsuko; Nagamura, Yoshiaki; Wu, Jianzhong; Matsumoto, Takashi; Takai, Toshiyuki; Okuno, Kazutoshi; Yano, Masahiro

2013-09-01

The genetic improvement of drought resistance is essential for stable and adequate crop production in drought-prone areas. Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle. DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity. Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction. Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar. Our experiments suggest that control of root system architecture will contribute to drought avoidance in crops.

Elemental composition of native wetland plants in constructed mesocosm treatment wetlands.

PubMed

Collins, Beverly S; Sharitz, Rebecca R; Coughlin, Daniel P

2005-05-01

Plants that accumulate a small percentage of metals in constructed treatment wetlands can contribute to remediation of acidic, metal contaminated runoff waters from coal mines or processing areas. We examined root and shoot concentrations of elements in four perennial wetland species over two seasons in mesocosm wetland systems designed to remediate water from a coal pile runoff basin. Deep wetlands in each system contained Myriophyllum aquaticum and Nymphaea odorata; shallow wetlands contained Juncus effusus and Pontederia cordata. Shoot elemental concentrations differed between plants of deep and shallow wetlands, with higher Zn, Al, and Fe concentrations in plants in shallow wetlands and higher Na, Mn, and P concentrations in plants in deep wetlands. Root and shoot concentrations of most elements differed between species in each wetland type. Over two seasons, these four common wetland plants did help remediate acidic, metal-contaminated runoff from a coal storage pile.

Farming system context drives the value of deep wheat roots in semi-arid environments

PubMed Central

Lilley, Julianne M.; Kirkegaard, John A.

2016-01-01

The capture of subsoil water by wheat roots can make a valuable contribution to grain yield on deep soils. More extensive root systems can capture more water, but leave the soil in a drier state, potentially limiting water availability to subsequent crops. To evaluate the importance of these legacy effects, a long-term simulation analysis at eight sites in the semi-arid environment of Australia compared the yield of standard wheat cultivars with cultivars that were (i) modified to have root systems which extract more water at depth and/or (ii) sown earlier to increase the duration of the vegetative period and hence rooting depth. We compared simulations with and without annual resetting of soil water to investigate the legacy effects of drier subsoils related to modified root systems. Simulated mean yield benefits from modified root systems declined from 0.1–0.6 t ha−1 when annually reset, to 0–0.2 t ha−1 in the continuous simulation due to a legacy of drier soils (mean 0–32mm) at subsequent crop sowing. For continuous simulations, predicted yield benefits of >0.2 t ha−1 from more extensive root systems were rare (3–10% of years) at sites with shallow soils (<1.0 m), but occurred in 14–44% of years at sites with deeper soils (1.6–2.5 m). Earlier sowing had a larger impact than modified root systems on water uptake (14–31 vs 2–17mm) and mean yield increase (up to 0.7 vs 0–0.2 t ha−1) and the benefits occurred on deep and shallow soils and in more years (9–79 vs 3–44%). Increasing the proportion of crops in the sequence which dry the subsoil extensively has implications for the farming system productivity, and the crop sequence must be managed tactically to optimize overall system benefits. PMID:26976814

Farming system context drives the value of deep wheat roots in semi-arid environments.

PubMed

Lilley, Julianne M; Kirkegaard, John A

2016-06-01

The capture of subsoil water by wheat roots can make a valuable contribution to grain yield on deep soils. More extensive root systems can capture more water, but leave the soil in a drier state, potentially limiting water availability to subsequent crops. To evaluate the importance of these legacy effects, a long-term simulation analysis at eight sites in the semi-arid environment of Australia compared the yield of standard wheat cultivars with cultivars that were (i) modified to have root systems which extract more water at depth and/or (ii) sown earlier to increase the duration of the vegetative period and hence rooting depth. We compared simulations with and without annual resetting of soil water to investigate the legacy effects of drier subsoils related to modified root systems. Simulated mean yield benefits from modified root systems declined from 0.1-0.6 t ha(-1) when annually reset, to 0-0.2 t ha(-1) in the continuous simulation due to a legacy of drier soils (mean 0-32mm) at subsequent crop sowing. For continuous simulations, predicted yield benefits of >0.2 t ha(-1) from more extensive root systems were rare (3-10% of years) at sites with shallow soils (<1.0 m), but occurred in 14-44% of years at sites with deeper soils (1.6-2.5 m). Earlier sowing had a larger impact than modified root systems on water uptake (14-31 vs 2-17mm) and mean yield increase (up to 0.7 vs 0-0.2 t ha(-1)) and the benefits occurred on deep and shallow soils and in more years (9-79 vs 3-44%). Increasing the proportion of crops in the sequence which dry the subsoil extensively has implications for the farming system productivity, and the crop sequence must be managed tactically to optimize overall system benefits. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Anchorage failure of young trees in sandy soils is prevented by a rigid central part of the root system with various designs

PubMed Central

Danquechin Dorval, Antoine; Meredieu, Céline; Danjon, Frédéric

2016-01-01

Background and Aims Storms can cause huge damage to European forests. Even pole-stage trees with 80-cm rooting depth can topple. Therefore, good anchorage is needed for trees to survive and grow up from an early age. We hypothesized that root architecture is a predominant factor determining anchorage failure caused by strong winds. Methods We sampled 48 seeded or planted Pinus pinaster trees of similar aerial size from four stands damaged by a major storm 3 years before. The trees were gathered into three classes: undamaged, leaning and heavily toppled. After uprooting and 3D digitizing of their full root architectures, we computed the mechanical characteristics of the main components of the root system from our morphological measurements. Key Results Variability in root architecture was quite large. A large main taproot, either short and thick or long and thin, and guyed by a large volume of deep roots, was the major component that prevented stem leaning. Greater shallow root flexural stiffness mainly at the end of the zone of rapid taper on the windward side also prevented leaning. Toppling in less than 90-cm-deep soil was avoided in trees with a stocky taproots or with a very big leeward shallow root. Toppled trees also had a lower relative root biomass – stump excluded – than straight trees. Conclusions It was mainly the flexural stiffness of the central part of the root system that secured anchorage, preventing a weak displacement of the stump. The distal part of the longest taproot and attached deep roots may be the only parts of the root system contributing to anchorage through their maximum tensile load. Several designs provided good anchorage, depending partly on available soil depth. Pole-stage trees are in-between the juvenile phase when they fail by toppling and the mature phase when they fail by uprooting. PMID:27456136

Evidence for direct water absorption by shallow-rooted desert plants in desert-oasis ecotone, Northwest China

NASA Astrophysics Data System (ADS)

Fang, Jing

2014-05-01

Besides the absorption by roots from the soil substrate, it has long been known that plants exhibit alternative water-absorption strategies, particularly in drought-prone environments. For many tropical epiphytic orchids, air moisture can be absorbed directly by aerial roots. Some conifers are also found to utilize air moisture by foliar absorption during the summer fog season. However, few studies have been carried out on the atmospheric water vapor absorption by shallow-rooted desert plants. We conducted experiments in desert-oasis ecotone and investigated the effects of dew absorbed by three kinds of shallow-rooted seedlings on net photosynthesis rate, as well as on other water relations variables. Three kinds of typical shallow-rooted desert species (Bassia dasyphylla, Salsola collina and Corispermum declinatum) have been chosen and potted. Each species were subjected to contrasting watering regimes (normal and deficient) and different air moisture conditions (having dew and having no dew) for 10 weeks. Net photosynthesis rate was measured on six occasions during the study. Other water relations variables (midday shoot water potential, relative water content, stomatal conductance) were also measured. Under the dew conditions, average net photosynthesis rate, shoot water potential, leaf relative water content and stomatal conductance increased, with greater responses observed for plants subjected to a deficient watering regime than for well-watered plants. These results indicated dew occurred in arid region could be utilized through foliar absorption by some shallow-rooted plants, and for the shallow-rooted plants, the presence of dew could significantly relieve the deficit of water in water-stressed regime.

Comparison of Rooting Strategies to Explore Rock Fractures for Shallow Soil-Adapted Tree Species with Contrasting Aboveground Growth Rates: A Greenhouse Microcosm Experiment.

PubMed

Nie, Yunpeng; Chen, Hongsong; Ding, Yali; Yang, Jing; Wang, Kelin

2017-01-01

For tree species adapted to shallow soil environments, rooting strategies that efficiently explore rock fractures are important because soil water depletion occurs frequently. However, two questions: (a) to what extent shallow soil-adapted species rely on exploring rock fractures and (b) what outcomes result from drought stress, have rarely been tested. Therefore, based on the expectation that early development of roots into deep soil layers is at the cost of aboveground growth, seedlings of three tree species ( Cyclobalanopsis glauca, Delavaya toxocarpa , and Acer cinnamomifolium ) with distinct aboveground growth rates were selected from a typical shallow soil region. In a greenhouse experiment that mimics the basic features of shallow soil environments, 1-year-old seedlings were transplanted into simulated microcosms of shallow soil overlaying fractured bedrock. Root biomass allocation and leaf physiological activities, as well as leaf δ 13 C values were investigated and compared for two treatments: regular irrigation and repeated cycles of drought stress. Our results show that the three species differed in their rooting strategies in the context of encountering rock fractures, however, these strategies were not closely related to the aboveground growth rate. For the slowest-growing seedling, C. glauca , percentages of root mass in the fractures, as well as in the soil layer between soil and bedrock increased significantly under both treatments, indicating a specialized rooting strategy that facilitated the exploration of rock fractures. Early investment in deep root growth was likely critical to the establishment of this drought-vulnerable species. For the intermediate-growing, A. cinnamomifolium , percentages of root mass in the bedrock and interface soil layers were relatively low and exhibited no obvious change under either treatment. This limited need to explore rock fractures was compensated by a conservative water use strategy. For the fast-growing, D. toxocarpa , percentages of root mass in the bedrock and interface layers increased simultaneously under drought conditions, but not under irrigated conditions. This drought-induced rooting plasticity was associated with drought avoidance by this species. Although, root development might have been affected by the simulated microcosm, contrasting results among the three species indicated that efficient use of rock fractures is not a necessary or specialized strategy of shallow-soil adapted species. The establishment and persistence of these species relied on the mutual complementation between their species-specific rooting strategies and drought adaptations.

Exchange of soil moisture between patches of wild-olive and pasture sustains evapotranspiration of a Mediterranean ecosystem in both wet and dry seasons

NASA Astrophysics Data System (ADS)

Curreli, M.; Montaldo, N.; Oren, R.

2017-12-01

Partitioning evapotranspiration in water-limited environments, such as Mediterranean ecosystems, could give information on vegetation and hydraulic dynamics. Indeed, in such ecosystems, trees may survive prolonged droughts by uptake of water by dimorphic root system: deep roots and shallower lateral roots, extending beyond the crown into inter-trees grassy areas. The water exchange between under canopy areas and treeless patches plays a crucial role on sustaining tree and grass physiological performance during droughts. The study has been performed at the Orroli site, Sardinia (Italy). The landscape is covered by patchy vegetation: wild olives trees in clumps and herbaceous species, drying to bare soil in summer. The climate is characterized by long droughts from May to October and rain events concentrated in the autumn and winter, whit a mean yearly rain of about 700 mm. A 10 m micrometeorological tower equipped with eddy-covariance system has been used for measuring water and energy surface fluxes, as well as key state variables (e.g. temperature, radiations, humidity and wind velocity). Soil moisture was measured with five soil water reflectometers (two below the olive canopy and three in the pasture). To estimate plant water use in the context of soil water dynamic, 33 Granier-type thermal dissipation probes were installed 40 cm aboveground, in representative trees over the eddy covariance footprint. Early analyses show that wild olive continue to transpire even as the soil dries and the pasture desiccates. This reveled hydraulic redistribution system through the plant and the soil, and allows to quantify the reliance of the system on horizontally and vertically differentiated soil compartments. Results shows that during light hours, until transpiration decreases in midday, shallow roots uptake deplete the shallow water content. As transpiration decreases, hydraulically redistributed water provides for both transpiration of wild olives and recharge of shallow soil layers in the inter-tree areas. This consents trees to remain physiologically active during very dry conditions and represent a mechanism of facilitation of the coexistence of tree-grass system.

Comparison of Rooting Strategies to Explore Rock Fractures for Shallow Soil-Adapted Tree Species with Contrasting Aboveground Growth Rates: A Greenhouse Microcosm Experiment

PubMed Central

Nie, Yunpeng; Chen, Hongsong; Ding, Yali; Yang, Jing; Wang, Kelin

2017-01-01

For tree species adapted to shallow soil environments, rooting strategies that efficiently explore rock fractures are important because soil water depletion occurs frequently. However, two questions: (a) to what extent shallow soil-adapted species rely on exploring rock fractures and (b) what outcomes result from drought stress, have rarely been tested. Therefore, based on the expectation that early development of roots into deep soil layers is at the cost of aboveground growth, seedlings of three tree species (Cyclobalanopsis glauca, Delavaya toxocarpa, and Acer cinnamomifolium) with distinct aboveground growth rates were selected from a typical shallow soil region. In a greenhouse experiment that mimics the basic features of shallow soil environments, 1-year-old seedlings were transplanted into simulated microcosms of shallow soil overlaying fractured bedrock. Root biomass allocation and leaf physiological activities, as well as leaf δ13C values were investigated and compared for two treatments: regular irrigation and repeated cycles of drought stress. Our results show that the three species differed in their rooting strategies in the context of encountering rock fractures, however, these strategies were not closely related to the aboveground growth rate. For the slowest-growing seedling, C. glauca, percentages of root mass in the fractures, as well as in the soil layer between soil and bedrock increased significantly under both treatments, indicating a specialized rooting strategy that facilitated the exploration of rock fractures. Early investment in deep root growth was likely critical to the establishment of this drought-vulnerable species. For the intermediate-growing, A. cinnamomifolium, percentages of root mass in the bedrock and interface soil layers were relatively low and exhibited no obvious change under either treatment. This limited need to explore rock fractures was compensated by a conservative water use strategy. For the fast-growing, D. toxocarpa, percentages of root mass in the bedrock and interface layers increased simultaneously under drought conditions, but not under irrigated conditions. This drought-induced rooting plasticity was associated with drought avoidance by this species. Although, root development might have been affected by the simulated microcosm, contrasting results among the three species indicated that efficient use of rock fractures is not a necessary or specialized strategy of shallow-soil adapted species. The establishment and persistence of these species relied on the mutual complementation between their species-specific rooting strategies and drought adaptations. PMID:29018464

Root depth and morphology in response to soil drought: comparing ecological groups along the secondary succession in a tropical dry forest.

PubMed

Paz, Horacio; Pineda-García, Fernando; Pinzón-Pérez, Luisa F

2015-10-01

Root growth and morphology may play a core role in species-niche partitioning in highly diverse communities, especially along gradients of drought risk, such as that created along the secondary succession of tropical dry forests. We experimentally tested whether root foraging capacity, especially at depth, decreases from early successional species to old-growth forest species. We also tested for a trade-off between two mechanisms for delaying desiccation, the capacity to forage deeper in the soil and the capacity to store water in tissues, and explored whether successional groups separate along such a trade-off. We examined the growth and morphology of roots in response to a controlled-vertical gradient of soil water, among seedlings of 23 woody species dominant along the secondary succession in a tropical dry forest of Mexico. As predicted, successional species developed deeper and longer root systems than old-growth forest species in response to soil drought. In addition, shallow root systems were associated with high plant water storage and high water content per unit of tissue in stems and roots, while deep roots exhibited the opposite traits, suggesting a trade-off between the capacities for vertical foraging and water storage. Our results suggest that an increased capacity of roots to forage deeper for water is a trait that enables successional species to establish under the warm-dry conditions of the secondary succession, while shallow roots, associated with a higher water storage capacity, are restricted to the old-growth forest. Overall, we found evidence that the root depth-water storage trade-off may constrain tree species distribution along secondary succession.

Anchorage failure of young trees in sandy soils is prevented by a rigid central part of the root system with various designs.

PubMed

Danquechin Dorval, Antoine; Meredieu, Céline; Danjon, Frédéric

2016-07-25

Storms can cause huge damage to European forests. Even pole-stage trees with 80-cm rooting depth can topple. Therefore, good anchorage is needed for trees to survive and grow up from an early age. We hypothesized that root architecture is a predominant factor determining anchorage failure caused by strong winds. We sampled 48 seeded or planted Pinus pinaster trees of similar aerial size from four stands damaged by a major storm 3 years before. The trees were gathered into three classes: undamaged, leaning and heavily toppled. After uprooting and 3D digitizing of their full root architectures, we computed the mechanical characteristics of the main components of the root system from our morphological measurements. Variability in root architecture was quite large. A large main taproot, either short and thick or long and thin, and guyed by a large volume of deep roots, was the major component that prevented stem leaning. Greater shallow root flexural stiffness mainly at the end of the zone of rapid taper on the windward side also prevented leaning. Toppling in less than 90-cm-deep soil was avoided in trees with a stocky taproots or with a very big leeward shallow root. Toppled trees also had a lower relative root biomass - stump excluded - than straight trees. It was mainly the flexural stiffness of the central part of the root system that secured anchorage, preventing a weak displacement of the stump. The distal part of the longest taproot and attached deep roots may be the only parts of the root system contributing to anchorage through their maximum tensile load. Several designs provided good anchorage, depending partly on available soil depth. Pole-stage trees are in-between the juvenile phase when they fail by toppling and the mature phase when they fail by uprooting. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Rooting depth varies differentially in trees and grasses as a function of mean annual rainfall in an African savanna.

PubMed

Holdo, Ricardo M; Nippert, Jesse B; Mack, Michelle C

2018-01-01

A significant fraction of the terrestrial biosphere comprises biomes containing tree-grass mixtures. Forecasting vegetation dynamics in these environments requires a thorough understanding of how trees and grasses use and compete for key belowground resources. There is disagreement about the extent to which tree-grass vertical root separation occurs in these ecosystems, how this overlap varies across large-scale environmental gradients, and what these rooting differences imply for water resource availability and tree-grass competition and coexistence. To assess the extent of tree-grass rooting overlap and how tree and grass rooting patterns vary across resource gradients, we examined landscape-level patterns of tree and grass functional rooting depth along a mean annual precipitation (MAP) gradient extending from ~ 450 to ~ 750 mm year -1 in Kruger National Park, South Africa. We used stable isotopes from soil and stem water to make inferences about relative differences in rooting depth between these two functional groups. We found clear differences in rooting depth between grasses and trees across the MAP gradient, with grasses generally exhibiting shallower rooting profiles than trees. We also found that trees tended to become more shallow-rooted as a function of MAP, to the point that trees and grasses largely overlapped in terms of rooting depth at the wettest sites. Our results reconcile previously conflicting evidence for rooting overlap in this system, and have important implications for understanding tree-grass dynamics under altered precipitation scenarios.

Mitigating Groundwater Depletion in North China Plain with Cropping System that Alternate Deep and Shallow Rooted Crops

PubMed Central

Yang, Xiao-Lin; Chen, Yuan-Quan; Steenhuis, Tammo S.; Pacenka, Steven; Gao, Wang-Sheng; Ma, Li; Zhang, Min; Sui, Peng

2017-01-01

In the North China Plain, groundwater tables have been dropping at unsustainable rates of 1 m per year due to irrigation of a double cropping system of winter wheat and summer maize. To reverse the trend, we examined whether alternative crop rotations could save water. Moisture contents were measured weekly at 20 cm intervals in the top 180 cm of soil as part of a 12-year field experiment with four crop rotations: sweet potato→ cotton→ sweet potato→ winter wheat-summer maize (SpCSpWS, 4-year cycle); peanuts → winter wheat-summer maize (PWS, 2-year cycle); ryegrass–cotton→ peanuts→ winter wheat-summer maize (RCPWS, 3-year cycle); and winter wheat-summer maize (WS, each year). We found that, compared to WS, the SpCSpWS annual evapotranspiration was 28% lower, PWS was 19% lower and RCPWS was 14% lower. The yield per unit of water evaporated improved for wheat within any alternative rotation compared to WS, increasing up to 19%. Average soil moisture contents at the sowing date of wheat in the SpCSpWS, PWS, and RCPWS rotations were 7, 4, and 10% higher than WS, respectively. The advantage of alternative rotations was that a deep rooted crop of winter wheat reaching down to 180 cm followed shallow rooted crops (sweet potato and peanut drawing soil moisture from 0 to 120 cm). They benefited from the sequencing and vertical complementarity of soil moisture extraction. Thus, replacing the traditional crop rotation with cropping system that involves rotating with annual shallow rooted crops is promising for reducing groundwater depletion in the North China Plain. PMID:28642779

[Responses of Cynodon dactylon population in hydro-fluctuation belt of Three Gorges Reservoir area to flooding-drying habitat change].

PubMed

Hong, Ming; Guo, Quan-Shu; Nie, Bi-Hong; Kang, Yi; Pei, Shun-Xiang; Jin, Jiang-Qun; Wang, Xiang-Fu

2011-11-01

This paper studied the population density, morphological characteristics, and biomass and its allocation of Cynodon dactylon at different altitudinal sections of the hydro-fluctuation belt in Three Gorges Reservoir area, based on located observations. At the three altitudinal sections, the population density of C. dactylon was in the order of shallow water section (165-170 m elevation) > non-flooded section (above 172 m elevation) > deep water section (145-150 m elevation), the root diameter and root length were in the order of deep water section > shallow water section > non-flooded section, the total biomass, root biomass, stem biomass, leaf biomass, and stem biomass allocation ratio were in the order of the shallow water section > non-flooded section > deep water section, and the root biomass allocation ratio, leaf biomass allocation ratio, and underground biomass/aboveground biomass were in the order of deep water section > shallow water section > non-flooded section. The unique adaption strategies of C. dactylon to the flooding-drying habitat change in the shallow water section were the accelerated elongation growth and the increased stem biomass allocation, those in the deep water section were the increased node number of primary and secondary branches, increased number of the branches, and increased leaf biomass allocation, whereas the common strategies in the shallow and deep water sections were the accelerated root growth and the increased tillering and underground biomass allocation for preparing nutrition and energy for the rapid growth in terrestrial environment.

Modelling Water Uptake Provides a New Perspective on Grass and Tree Coexistence

PubMed Central

2015-01-01

Root biomass distributions have long been used to infer patterns of resource uptake. These patterns are used to understand plant growth, plant coexistence and water budgets. Root biomass, however, may be a poor indicator of resource uptake because large roots typically do not absorb water, fine roots do not absorb water from dry soils and roots of different species can be difficult to differentiate. In a sub-tropical savanna, Kruger Park, South Africa, we used a hydrologic tracer experiment to describe the abundance of active grass and tree roots across the soil profile. We then used this tracer data to parameterize a water movement model (Hydrus 1D). The model accounted for water availability and estimated grass and tree water uptake by depth over a growing season. Most root biomass was found in shallow soils (0–20 cm) and tracer data revealed that, within these shallow depths, half of active grass roots were in the top 12 cm while half of active tree roots were in the top 21 cm. However, because shallow soils provided roots with less water than deep soils (20–90 cm), the water movement model indicated that grass and tree water uptake was twice as deep as would be predicted from root biomass or tracer data alone: half of grass and tree water uptake occurred in the top 23 and 43 cm, respectively. Niche partitioning was also greater when estimated from water uptake rather than tracer uptake. Contrary to long-standing assumptions, shallow grass root distributions absorbed 32% less water than slightly deeper tree root distributions when grasses and trees were assumed to have equal water demands. Quantifying water uptake revealed deeper soil water uptake, greater niche partitioning and greater benefits of deep roots than would be estimated from root biomass or tracer uptake data alone. PMID:26633177

Life cycle stage and water depth affect flooding-induced adventitious root formation in the terrestrial species Solanum dulcamara

PubMed Central

Zhang, Qian; Visser, Eric J. W.; de Kroon, Hans; Huber, Heidrun

2015-01-01

Background and Aims Flooding can occur at any stage of the life cycle of a plant, but often adaptive responses of plants are only studied at a single developmental stage. It may be anticipated that juvenile plants may respond differently from mature plants, as the amount of stored resources may differ and morphological changes can be constrained. Moreover, different water depths may require different strategies to cope with the flooding stress, the expression of which may also depend on developmental stage. This study investigated whether flooding-induced adventitious root formation and plant growth were affected by flooding depth in Solanum dulcamara plants at different developmental stages. Methods Juvenile plants without pre-formed adventitious root primordia and mature plants with primordia were subjected to shallow flooding or deep flooding for 5 weeks. Plant growth and the timing of adventitious root formation were monitored during the flooding treatments. Key Results Adventitious root formation in response to shallow flooding was significantly constrained in juvenile S. dulcamara plants compared with mature plants, and was delayed by deep flooding compared with shallow flooding. Complete submergence suppressed adventitious root formation until up to 2 weeks after shoots restored contact with the atmosphere. Independent of developmental stage, a strong positive correlation was found between adventitious root formation and total biomass accumulation during shallow flooding. Conclusions The potential to deploy an escape strategy (i.e. adventitious root formation) may change throughout a plant’s life cycle, and is largely dependent on flooding depth. Adaptive responses at a given stage of the life cycle thus do not necessarily predict how the plant responds to flooding in another growth stage. As variation in adventitious root formation also correlates with finally attained biomass, this variation may form the basis for variation in resistance to shallow flooding among plants. PMID:26105188

Life cycle stage and water depth affect flooding-induced adventitious root formation in the terrestrial species Solanum dulcamara.

PubMed

Zhang, Qian; Visser, Eric J W; de Kroon, Hans; Huber, Heidrun

2015-08-01

Flooding can occur at any stage of the life cycle of a plant, but often adaptive responses of plants are only studied at a single developmental stage. It may be anticipated that juvenile plants may respond differently from mature plants, as the amount of stored resources may differ and morphological changes can be constrained. Moreover, different water depths may require different strategies to cope with the flooding stress, the expression of which may also depend on developmental stage. This study investigated whether flooding-induced adventitious root formation and plant growth were affected by flooding depth in Solanum dulcamara plants at different developmental stages. Juvenile plants without pre-formed adventitious root primordia and mature plants with primordia were subjected to shallow flooding or deep flooding for 5 weeks. Plant growth and the timing of adventitious root formation were monitored during the flooding treatments. Adventitious root formation in response to shallow flooding was significantly constrained in juvenile S. dulcamara plants compared with mature plants, and was delayed by deep flooding compared with shallow flooding. Complete submergence suppressed adventitious root formation until up to 2 weeks after shoots restored contact with the atmosphere. Independent of developmental stage, a strong positive correlation was found between adventitious root formation and total biomass accumulation during shallow flooding. The potential to deploy an escape strategy (i.e. adventitious root formation) may change throughout a plant's life cycle, and is largely dependent on flooding depth. Adaptive responses at a given stage of the life cycle thus do not necessarily predict how the plant responds to flooding in another growth stage. As variation in adventitious root formation also correlates with finally attained biomass, this variation may form the basis for variation in resistance to shallow flooding among plants. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Root productivity of deciduous and evergreen species identified using a molecular approach

NASA Astrophysics Data System (ADS)

Ellsworth, P.; Sternberg, L. O.

2012-12-01

The linkage between leaf traits and root structure may explain how plants integrate above and belowground traits into whole plant adaptations to environmental stresses. In dry seasonal forests, the lack of dry season precipitation dries out the relatively nutrient-rich shallow soil, leaving shallow soil water and nutrients inaccessible to uptake until the wet season. In tropical or subtropical seasonal dry forests, deciduousness may allow for the survival of shallow fine roots during the dry season. Losing leaves during the dry season reduces aboveground plant water demand, and a greater proportion of water extracted from deep soil can be used to maintain shallow roots until the wet season. Higher shallow root survival through the dry season than evergreen species means that deciduous species can take advantage of the nutrient pulse associated with the onset of the wet season. To test the above hypothesis, fine roots were collected from soil cores in a seasonally dry forest during the dry season, onset of the wet season, and the wet season and were identified to selected evergreen and deciduous study species. The fine roots of two of the selected species (Lyonia ferruginea and Carya floridana) could be identified from visual characteristics. The other three study species, which were all from the genus Quercus (Q. geminata, Q. myrtifolia, and Q. laevis), were impossible to separate visually. We developed a PCR-based restriction fragment length polymorphism (PCR-RFLP) technique, which provided a quick, simple, low-cost way to identify the species of all fine roots of our study species. We extracted DNA from all roots that were not visually identified, amplified the internal transcribed spacer region (ITS), digested the ITS region with the restriction enzyme TaqαI, and used gel electrophoresis to separate DNA fragments. Using a PCR-RFLP based root identification key that we developed for the species at Archbold Biological Station, all species that could not be identified visually were separated based on each species ' unique banding pattern of restriction fragments. Approximately 2,500 roots were identified using PCR-RFLP and approximately 1,500 more roots were identified visually. Identifying fine roots to species allows for species-level analysis of root productivity in this in situ study.

Topographic and ecological controls on root reinforcement

Treesearch

T.C. Hales; C.R. Ford; T. Hwang; J.M. Vose; L.E. Band

2009-01-01

Shallow landslides are a significant hazard in steep, soil-mantled landscapes. During intense rainfall events, the distribution of shallow landslides is controlled by variations in landscape gradient, the frictional and cohesive properties of soil and roots, and the subsurface hydrologic response. While gradients can be estimated from digital elevation models,...

Topographic and ecologic controls on root reinforcement

Treesearch

T.C. Hales; C.R. Ford; T. Hwang; J.M. Vose; L.E. Band

2009-01-01

Shallow landslides are a significant hazard in steep, soil-mantled landscapes. During intense rainfall events, the distribution of shallow landslides is controlled by variations in landscape gradient, the frictional and cohesive properties of soil and roots, and the subsurface hydrologic response. While gradients can be estimated from digital elevation models,...

Effects of grapevine root density and reinforcement on slopes prone to shallow slope instability

NASA Astrophysics Data System (ADS)

Meisina, Claudia; Bordoni, Massimiliano; Bischetti, Gianbattista; Vercesi, Alberto; Chiaradia, Enrico; Cislaghi, Alessio; Valentino, Roberto; Bittelli, Marco; Vergani, Chiara; Chersich, Silvia; Giuseppina Persichillo, Maria; Comolli, Roberto

2016-04-01

Slope erosion and shallow slope instabilities are the major factors of soil losses in cultivated steep terrains. These phenomena also cause loss of organic matter and plants nutrients, together with the partial or total destruction of the structures, such as the row tillage pattern of the vineyards, which allow for the plants cultivation. Vegetation has long been used as an effective tool to decrease the susceptibility of a slope to erosion and to shallow landslides. In particular, the scientific research focused on the role played by the plant roots, because the belowground biomass has the major control on the potential development of soil erosion and of shallow failures. Instead, a comprehensive study that analyzes the effects of the roots of agricultural plants on both soil erosion and slope instability has not been carried out yet. This aspect should be fundamental where sloped terrains are cultivated with plants of great economical relevance, as grapevine. To contribute to fill this gap, in this study the features of root density in the soil profile have been analyzed in slopes cultivated with vineyards, located on a sample hilly area of Oltrepò Pavese (northern Italy). In this area, the viticulture is the most important branch of the local economy. Moreover, several events of rainfall-induced slope erosion and shallow landslides have occurred in this area in the last 6 years, causing several economical damages linked to the destruction of the vineyards and the loss of high productivity soils. Grapevine root distribution have been measured in different test-site slopes, representative of the main geological, geomorphological, pedological, landslides distribution, agricultural features, in order to identify particular patterns on root density that can influence the development of slope instabilities. Roots have been sampled in each test-site for characterizing their strength, in terms of the relation between root diameter and root force at rupture. Root density and root strength have been combined in a physical model (Fiber Bundle Model), for the assessment of the trends of the root reinforcement in soil. The results of this study have contributed to identify root distribution behaviours, in different agricultural and environmental conditions, that have not been enough to guarantee slope stability or that can promote an increase of it. This can furnish important indications for a better identification of slopes more susceptible to slope instabilities and for improving land planning.

Tree-root control of shallow landslides

NASA Astrophysics Data System (ADS)

Cohen, Denis; Schwarz, Massimiliano

2017-08-01

Tree roots have long been recognized to increase slope stability by reinforcing the strength of soils. Slope stability models usually include the effects of roots by adding an apparent cohesion to the soil to simulate root strength. No model includes the combined effects of root distribution heterogeneity, stress-strain behavior of root reinforcement, or root strength in compression. Recent field observations, however, indicate that shallow landslide triggering mechanisms are characterized by differential deformation that indicates localized activation of zones in tension, compression, and shear in the soil. Here we describe a new model for slope stability that specifically considers these effects. The model is a strain-step discrete element model that reproduces the self-organized redistribution of forces on a slope during rainfall-triggered shallow landslides. We use a conceptual sigmoidal-shaped hillslope with a clearing in its center to explore the effects of tree size, spacing, weak zones, maximum root-size diameter, and different root strength configurations. Simulation results indicate that tree roots can stabilize slopes that would otherwise fail without them and, in general, higher root density with higher root reinforcement results in a more stable slope. The variation in root stiffness with diameter can, in some cases, invert this relationship. Root tension provides more resistance to failure than root compression but roots with both tension and compression offer the best resistance to failure. Lateral (slope-parallel) tension can be important in cases when the magnitude of this force is comparable to the slope-perpendicular tensile force. In this case, lateral forces can bring to failure tree-covered areas with high root reinforcement. Slope failure occurs when downslope soil compression reaches the soil maximum strength. When this occurs depends on the amount of root tension upslope in both the slope-perpendicular and slope-parallel directions. Roots in tension can prevent failure by reducing soil compressive forces downslope. When root reinforcement is limited, a crack parallel to the slope forms near the top of the hillslope. Simulations with roots that fail across this crack always resulted in a landslide. Slopes that did not form a crack could either fail or remain stable, depending on root reinforcement. Tree spacing is important for the location of weak zones but tree location on the slope (with respect to where a crack opens) is as important. Finally, for the specific cases tested here, intermediate-sized roots (5 to 20 mm in diameter) appear to contribute most to root reinforcement. Our results show more complex behaviors than can be obtained with the traditional slope-uniform, apparent-cohesion approach. A full understanding of the mechanisms of shallow landslide triggering requires a complete re-evaluation of this traditional approach that cannot predict where and how forces are mobilized and distributed in roots and soils, and how these control shallow landslides shape, size, location, and timing.

Contrasting hydraulic architecture and function in deep and shallow roots of tree species from a semi-arid habitat

PubMed Central

Johnson, Daniel M.; Brodersen, Craig R.; Reed, Mary; Domec, Jean-Christophe; Jackson, Robert B.

2014-01-01

Background and Aims Despite the importance of vessels in angiosperm roots for plant water transport, there is little research on the microanatomy of woody plant roots. Vessels in roots can be interconnected networks or nearly solitary, with few vessel–vessel connections. Species with few connections are common in arid habitats, presumably to isolate embolisms. In this study, measurements were made of root vessel pit sizes, vessel air-seeding pressures, pit membrane thicknesses and the degree of vessel interconnectedness in deep (approx. 20 m) and shallow (<10 cm) roots of two co-occurring species, Sideroxylon lanuginosum and Quercus fusiformis. Methods Scanning electron microscopy was used to image pit dimensions and to measure the distance between connected vessels. The number of connected vessels in larger samples was determined by using high-resolution computed tomography and three-dimensional (3-D) image analysis. Individual vessel air-seeding pressures were measured using a microcapillary method. The thickness of pit membranes was measured using transmission electron microscopy. Key Results Vessel pit size varied across both species and rooting depths. Deep Q. fusiformis roots had the largest pits overall (>500 µm) and more large pits than either shallow Q. fusiformis roots or S. lanuginosum roots. Vessel air-seeding pressures were approximately four times greater in Q. fusiformis than in S. lanuginosum and 1·3–1·9 times greater in shallow roots than in deep roots. Sideroxylon lanuginosum had 34–44 % of its vessels interconnected, whereas Q. fusiformis only had 1–6 % of its vessels connected. Vessel air-seeding pressures were unrelated to pit membrane thickness but showed a positive relationship with vessel interconnectedness. Conclusions These data support the hypothesis that species with more vessel–vessel integration are often less resistant to embolism than species with isolated vessels. This study also highlights the usefulness of tomography for vessel network analysis and the important role of 3-D xylem organization in plant hydraulic function. PMID:24363350

Desirable plant root traits for protecting unstable slopes against landslides

NASA Astrophysics Data System (ADS)

Stokes, A.; Atger, C.; Bengough, G.; Fourcaud, T.; Sidle, R. C.

2009-04-01

A trait is defined as a distinct, quantitative property of organisms, usually measured at the individual level and used comparatively across species. Plant quantitative traits are extremely important for understanding the local ecology of any site. Plant height, architecture, root depth, wood density, leaf size and leaf nitrogen concentration control ecosystem processes and define habitat for other taxa. An engineer conjecturing as to how plant traits may directly influence physical processes occurring on sloping land just needs to consider how e.g. canopy architecture and litter properties influence the partitioning of rainfall among interception loss, infiltration and runoff. Plant traits not only influence abiotic processes occurring at a site, but also the habitat for animals and invertebrates. Depending on the goal of the landslide engineer, the immediate and long-term effects of plant traits in an environment must be considered if a site is to remain viable and ecologically successful. When vegetation is considered in models of slope stability, usually the only root parameters taken into consideration are tensile strength and root area ratio. Root system spatial structure is not considered, although the length, orientation and diameter of roots are recognized as being of importance. Thick roots act like soil nails on slopes, reinforcing soil in the same way that concrete is reinforced with steel rods. The spatial position of these thick roots also has an indirect effect on soil fixation in that the location of thin and fine roots will depend on the arrangement of thick roots. Thin and fine roots act in tension during failure on slopes and if they cross the slip surface, are largely responsible for reinforcing soil on slopes. Therefore, the most important trait to consider initially is rooting depth. To stabilize a slope against a shallow landslide, roots must cross the shear surface. The number and thickness of roots in this zone will therefore largely determine slope stability. Rooting depth is species dependent when soil conditions are not limiting and the number of horizontal lateral roots borne on the vertical roots usually changes with depth. Therefore, the number and orientation of roots that the shear surface intersects will change significantly with rooting depth for the same plant, even for magnitudes of only several cm. Similarly, depending on the geometry of the root system, the angle at which a root crosses the shear surface can also have an influence on its resistance to pullout and breakage. The angle at which a root emerges from the parent root is dependent on root type, depth and species (when soil conditions are not limiting). Due to the physiology of roots, a root branch can be initiated at any point along a parent root, but not necessarily emerge fully from the parent root. These traits, along with others including size, relative growth rate, regeneration strategies, wood structure and strength will be discussed with regard to their influence on slope stability. How each of these traits is influenced by soil conditions and plantation techniques is also of extreme importance to the landslide engineer. The presence of obstacles in the soil, as well as compaction, affects root length and branching pattern. Roots of many species of woody plants on shallow soils also tend to grow along fractures deep into the underlying bedrock which allows roots to locate supplies of nutrient and water rich pockets. Rooting depths of herbaceous species in water-limited environments are highly correlated with infiltration depth, but waterlogged soils can asphyxiate tree roots, resulting in shallow root systems. The need to understand and integrate each of these traits for a species is not easy. Therefore, we suggest a hierarchy whereby traits are considered in order of importance, along with how external factors influence their expression over time.

Simulating vegetation controls on hurricane-induced shallow landslides with a distributed ecohydrological model

Treesearch

Taehee Hwang; Lawrence E. Band; T. C. Hales; Chelcy F. Miniat; James M. Vose; Paul V. Bolstad; Brian Miles; Katie Price

2015-01-01

The spatial distribution of shallow landslides in steep forested mountains is strongly controlled by aboveground and belowground biomass, including the distribution of root cohesion. While remote sensing of aboveground canopy properties is relatively advanced, estimating the spatial distribution of root cohesion at the forest landscape scale remains challenging. We...

Dro1, a major QTL involved in deep rooting of rice under upland field conditions.

PubMed

Uga, Yusaku; Okuno, Kazutoshi; Yano, Masahiro

2011-05-01

Developing a deep root system is an important strategy for avoiding drought stress in rice. Using the 'basket' method, the ratio of deep rooting (RDR; the proportion of total roots that elongated through the basket bottom) was calculated to evaluate deep rooting. A new major quantitative trait locus (QTL) controlling RDR was detected on chromosome 9 by using 117 recombinant inbred lines (RILs) derived from a cross between the lowland cultivar IR64, with shallow rooting, and the upland cultivar Kinandang Patong (KP), with deep rooting. This QTL explained 66.6% of the total phenotypic variance in RDR in the RILs. A BC(2)F(3) line homozygous for the KP allele of the QTL had an RDR of 40.4%, compared with 2.6% for the homozygous IR64 allele. Fine mapping of this QTL was undertaken using eight BC(2)F(3) recombinant lines. The RDR QTL Dro1 (Deeper rooting 1) was mapped between the markers RM24393 and RM7424, which delimit a 608.4 kb interval in the reference cultivar Nipponbare. To clarify the influence of Dro1 in an upland field, the root distribution in different soil layers was quantified by means of core sampling. A line homozygous for the KP allele of Dro1 (Dro1-KP) and IR64 did not differ in root dry weight in the shallow soil layers (0-25 cm), but root dry weight of Dro1-KP in deep soil layers (25-50 cm) was significantly greater than that of IR64, suggesting that Dro1 plays a crucial role in increased deep rooting under upland field conditions.

Root growth dynamics linked to above-ground growth in walnut (Juglans regia).

PubMed

Contador, Maria Loreto; Comas, Louise H; Metcalf, Samuel G; Stewart, William L; Porris Gomez, Ignacio; Negron, Claudia; Lampinen, Bruce D

2015-07-01

Examination of plant growth below ground is relatively scant compared with that above ground, and is needed to understand whole-plant responses to the environment. This study examines whether the seasonal timing of fine root growth and the spatial distribution of this growth through the soil profile varies in response to canopy manipulation and soil temperature. Plasticity in the seasonal timing and vertical distribution of root production in response to canopy and soil water manipulation was analysed in field-grown walnut (Juglans regia 'Chandler') using minirhizotron techniques. Root production in walnuts followed a unimodal curve, with one marked flush of root growth starting in mid-May, with a peak in mid-June. Root production declined later in the season, corresponding to increased soil temperature, as well as to the period of major carbohydrate allocation to reproduction. Canopy and soil moisture manipulation did not influence the timing of root production, but did influence the vertical distribution of roots through the soil profile. Water deficit appeared to promote root production in deeper soil layers for mining soil water. Canopy removal appeared to promote shallow root production. The findings of this study add to growing evidence that root growth in many ecosystems follows a unimodal curve with one marked flush of root growth in coordination with the initial leaf flush of the season. Root vertical distribution appeared to have greater plasticity than timing of root production in this system, with temperature and/or carbohydrate competition constraining the timing of root growth. Effects on root distribution can have serious impacts on trees, with shallow rooting having negative impacts in years with limited soil water or positive impacts in years with wet springs, and deep rooting having positive impacts on soil water mining from deeper soil layers but negative impacts in years with wet springs. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Using three-dimensional plant root architecture in models of shallow-slope stability.

PubMed

Danjon, Frédéric; Barker, David H; Drexhage, Michael; Stokes, Alexia

2008-05-01

The contribution of vegetation to shallow-slope stability is of major importance in landslide-prone regions. However, existing slope stability models use only limited plant root architectural parameters. This study aims to provide a chain of tools useful for determining the contribution of tree roots to soil reinforcement. Three-dimensional digitizing in situ was used to obtain accurate root system architecture data for mature Quercus alba in two forest stands. These data were used as input to tools developed, which analyse the spatial position of roots, topology and geometry. The contribution of roots to soil reinforcement was determined by calculating additional soil cohesion using the limit equilibrium model, and the factor of safety (FOS) using an existing slope stability model, Slip4Ex. Existing models may incorrectly estimate the additional soil cohesion provided by roots, as the spatial position of roots crossing the potential slip surface is usually not taken into account. However, most soil reinforcement by roots occurs close to the tree stem and is negligible at a distance >1.0 m from the tree, and therefore global values of FOS for a slope do not take into account local slippage along the slope. Within a forest stand on a landslide-prone slope, soil fixation by roots can be minimal between uniform rows of trees, leading to local soil slippage. Therefore, staggered rows of trees would improve overall slope stability, as trees would arrest the downward movement of soil. The chain of tools consisting of both software (free for non-commercial use) and functions available from the first author will enable a more accurate description and use of root architectural parameters in standard slope stability analyses.

Using Three-dimensional Plant Root Architecture in Models of Shallow-slope Stability

PubMed Central

Danjon, Frédéric; Barker, David H.; Drexhage, Michael; Stokes, Alexia

2008-01-01

Background The contribution of vegetation to shallow-slope stability is of major importance in landslide-prone regions. However, existing slope stability models use only limited plant root architectural parameters. This study aims to provide a chain of tools useful for determining the contribution of tree roots to soil reinforcement. Methods Three-dimensional digitizing in situ was used to obtain accurate root system architecture data for mature Quercus alba in two forest stands. These data were used as input to tools developed, which analyse the spatial position of roots, topology and geometry. The contribution of roots to soil reinforcement was determined by calculating additional soil cohesion using the limit equilibrium model, and the factor of safety (FOS) using an existing slope stability model, Slip4Ex. Key Results Existing models may incorrectly estimate the additional soil cohesion provided by roots, as the spatial position of roots crossing the potential slip surface is usually not taken into account. However, most soil reinforcement by roots occurs close to the tree stem and is negligible at a distance >1·0 m from the tree, and therefore global values of FOS for a slope do not take into account local slippage along the slope. Conclusions Within a forest stand on a landslide-prone slope, soil fixation by roots can be minimal between uniform rows of trees, leading to local soil slippage. Therefore, staggered rows of trees would improve overall slope stability, as trees would arrest the downward movement of soil. The chain of tools consisting of both software (free for non-commercial use) and functions available from the first author will enable a more accurate description and use of root architectural parameters in standard slope stability analyses. PMID:17766845

Effects of landfill gas on subtropical woody plants

NASA Astrophysics Data System (ADS)

Chan, G. Y. S.; Wong, M. H.; Whitton, B. A.

1991-05-01

An account is given of the influence of landfill gas on tree growth in the field at Gin Drinkers' Bay (GDB) landfill, Hong Kong, and in the laboratory. Ten species ( Acacia confusa, Albizzia lebbek, Aporusa chinensis, Bombax malabaricum, Castanopsis fissa, Liquidambar formosana, Litsea glutinosa, Machilus breviflora, Pinus elliottii, and Tristania conferta), belonging to eight families, were transplanted to two sites, one with a high concentration of landfill gas in the cover soil (high-gas site, HGS) and the other with a relatively low concentration of gas (low-gas site, LGS). Apart from the gaseous composition, the general soil properties were similar. A strong negative correlation between tree growth and landfill gas concentration was observed. A laboratory study using the simulated landfill gas to fumigate seedlings of the above species showed that the adventitious root growth of Aporusa chinensis, Bombax malabaricum, Machilus breviflora, and Tristania confera was stimulated by the gas, with shallow root systems being induced. Acacia confusa, Albizzia lebbek, and Litsea glutinosa were gas-tolerant, while root growth of Castanopsis fissa, Liquidambar formosana, and Pinus elliottii was inhibited. In most cases, shoot growth was not affected, exceptions being Bombax malabaricum, Liquidambar formosana, and Tristania conferta, where stunted growth and/or reduced foliation was observed. A very high CO2 concentration in cover soil limits the depth of the root system. Trees with a shallow root system become very susceptible to water stress. The effects of low O2 concentration in soil are less important than the effects of high CO2 concentration. Acacia confusa, Albizzia lebbek, and Tristania conferta are suited for growth on subtropical completed landfills mainly due to their gas tolerance and/or drought tolerance.

Experimentally increased nutrient availability at the permafrost thaw front selectively enhances biomass production of deep-rooting subarctic peatland species.

PubMed

Keuper, Frida; Dorrepaal, Ellen; van Bodegom, Peter M; van Logtestijn, Richard; Venhuizen, Gemma; van Hal, Jurgen; Aerts, Rien

2017-10-01

Climate warming increases nitrogen (N) mineralization in superficial soil layers (the dominant rooting zone) of subarctic peatlands. Thawing and subsequent mineralization of permafrost increases plant-available N around the thaw-front. Because plant production in these peatlands is N-limited, such changes may substantially affect net primary production and species composition. We aimed to identify the potential impact of increased N-availability due to permafrost thawing on subarctic peatland plant production and species performance, relative to the impact of increased N-availability in superficial organic layers. Therefore, we investigated whether plant roots are present at the thaw-front (45 cm depth) and whether N-uptake ( 15 N-tracer) at the thaw-front occurs during maximum thaw-depth, coinciding with the end of the growing season. Moreover, we performed a unique 3-year belowground fertilization experiment with fully factorial combinations of deep- (thaw-front) and shallow-fertilization (10 cm depth) and controls. We found that certain species are present with roots at the thaw-front (Rubus chamaemorus) and have the capacity (R. chamaemorus, Eriophorum vaginatum) for N-uptake from the thaw-front between autumn and spring when aboveground tissue is largely senescent. In response to 3-year shallow-belowground fertilization (S) both shallow- (Empetrum hermaphroditum) and deep-rooting species increased aboveground biomass and N-content, but only deep-rooting species responded positively to enhanced nutrient supply at the thaw-front (D). Moreover, the effects of shallow-fertilization and thaw-front fertilization on aboveground biomass production of the deep-rooting species were similar in magnitude (S: 71%; D: 111% increase compared to control) and additive (S + D: 181% increase). Our results show that plant-available N released from thawing permafrost can form a thus far overlooked additional N-source for deep-rooting subarctic plant species and increase their biomass production beyond the already established impact of warming-driven enhanced shallow N-mineralization. This may result in shifts in plant community composition and may partially counteract the increased carbon losses from thawing permafrost. © 2017 John Wiley & Sons Ltd.

Compensatory Root Water Uptake of Overlapping Root Systems

NASA Astrophysics Data System (ADS)

Agee, E.; Ivanov, V. Y.; He, L.; Bisht, G.; Shahbaz, P.; Fatichi, S.; Gough, C. M.; Couvreur, V.; Matheny, A. M.; Bohrer, G.

2015-12-01

Land-surface models use simplified representations of root water uptake based on biomass distributions and empirical functions that constrain water uptake during unfavorable soil moisture conditions. These models fail to capture the observed hydraulic plasticity that allows plants to regulate root hydraulic conductivity and zones of active uptake based on local gradients. Recent developments in root water uptake modeling have sought to increase its mechanistic representation by bridging the gap between physically based microscopic models and computationally feasible macroscopic approaches. It remains to be demonstrated whether bulk parameterization of microscale characteristics (e.g., root system morphology and root conductivity) can improve process representation at the ecosystem scale. We employ the Couvreur method of microscopic uptake to yield macroscopic representation in a coupled soil-root model. Using a modified version of the PFLOTRAN model, which represents the 3-D physics of variably saturated soil, we model a one-hectare temperate forest stand under natural and synthetic climatic forcing. Our results show that as shallow soil layers dry, uptake at the tree and stand level shift to deeper soil layers, allowing the transpiration stream demanded by the atmosphere. We assess the potential capacity of the model to capture compensatory root water uptake. Further, the hydraulic plasticity of the root system is demonstrated by the quick response of uptake to rainfall pulses. These initial results indicate a promising direction for land surface models in which significant three-dimensional information from large root systems can be feasibly integrated into the forest scale simulations of root water uptake.

40 CFR 230.43 - Vegetated shallows.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Special Aquatic Sites § 230.43 Vegetated shallows. (a) Vegetated shallows are permanently inundated areas that under normal circumstances support communities of rooted aquatic vegetation, such as turtle grass...) releasing chemicals that adversely affect plants and animals; (4) increasing turbidity levels, thereby...

Effect of water table fluctuations on phreatophytic root distribution.

PubMed

Tron, Stefania; Laio, Francesco; Ridolfi, Luca

2014-11-07

The vertical root distribution of riparian vegetation plays a relevant role in soil water balance, in the partition of water fluxes into evaporation and transpiration, in the biogeochemistry of hyporheic corridors, in river morphodynamics evolution, and in bioengineering applications. The aim of this work is to assess the effect of the stochastic variability of the river level on the root distribution of phreatophytic plants. A function describing the vertical root profile has been analytically obtained by coupling a white shot noise representation of the river level variability to a description of the dynamics of root growth and decay. The root profile depends on easily determined parameters, linked to stream dynamics, vegetation and soil characteristics. The riparian vegetation of a river characterized by a high variability turns out to have a rooting system spread over larger depths, but with shallower mean root depths. In contrast, a lower river variability determines root profiles with higher mean root depths. Copyright © 2014 Elsevier Ltd. All rights reserved.

Micro 3D ERT tomography for data assimilation modelling of active root zone

NASA Astrophysics Data System (ADS)

Vanella, Daniela; Busato, Laura; Boaga, Jacopo; Cassiani, Giorgio; Binley, Andrew; Putti, Mario; Consoli, Simona

2016-04-01

Within the soil-plant-atmosphere system, root activity plays a fundamental role, as it connects different domains and allows a large part of the water and nutrient exchanges necessary for plant sustenance. The understanding of these processes is not only useful from an environmental point of view, making a fundamental contribution to the understanding of the critical zone dynamics, but also plays a pivotal role in precision agriculture, where the optimisation of water resources exploitation is mandatory and often carried out through deficit irrigation techniques. In this work, we present the results of non-invasive monitoring of the active root zone of two orange trees (Citrus sinensis, cv Tarocco Ippolito) located in an orange orchard in eastern Sicily (Italy) and drip irrigated with two different techniques: partial root drying and 100% crop evapotranspiration. The main goal of the monitoring activity is to assess possible differences between the developed root systems and the root water uptake between the two irrigation strategies. The monitoring is conducted using 3D micro-electrical resistivity tomography (ERT) based on an apparatus composed of a number of micro-boreholes (about 1.2 m deep) housing 12 electrodes each, plus a number of surface electrodes. Time-lapse measurements conducted both with long-term periodicity and short-term repetition before and after irrigation clearly highlight the presence and distribution of root water uptake zone both at shallow and larger depth, likely to correspond to zones utilized during the irrigation period (shallow) and during the time when the crop is not irrigated (deep). Subsidiary information is available in terms of precipitation, sap flow measurements and micrometeorological evapotranspiration estimates. This data ensemble lends itself to the assimilation into a variably saturated flow model, where both soil hydraulic parameters and root distribution shall be identified. Preliminary results in this directions show the potential of the method and its exciting outlook.

Feasibility for Application of Soil Bioengineering Techniques to Natural Wastewater Treatment Systems

DTIC Science & Technology

1992-12-01

surface erosion control technique, providing shallow soil protection against the impact of heavy rains and running water. As adventitious rooting... soil protection against the impact of heavy rains and running water (Schiechtl, 1980). Figure 13 shows a typical brushmattress used as streambank

HYDRAULIC REDISTRIBUTION IN A DOUGLAS-FIR FOREST: LESSONS FROM SYSTEM MANIPULATIONS

EPA Science Inventory

Hydraulic redistribution (HR) has been shown to slow drying of surface soils during drought in Pacific Northwest forests, but the controls governing this process and its importance to shallow-rooted species are poorly understood. Our objective in this study was to manipulate the...

Plasticity in nodal root elongation through the hardpan triggered by rewatering during soil moisture fluctuation stress in rice.

PubMed

Suralta, Roel Rodriguez; Niones, Jonathan Manito; Kano-Nakata, Mana; Thi Tran, Thiem; Mitsuya, Shiro; Yamauchi, Akira

2018-03-12

Rainfed lowland (RFL) rice fields have hardpans and experience soil moisture fluctuations (SMF) stress, which influence root system development. Here, we clarify the expression and timing of the plasticity in nodal root elongation through the hardpan under SMF and its contribution to shoot growth using a shallow-rooting IR64 and its deep-rooting introgression line, YTH304. Under SMF, soil moisture content had negative relationship with soil penetration resistance, regardless of hardpan bulk densities. YTH304 had greater root system below the hardpan than IR64 in hardpan with 1.50 but not in 1.70 g cm -3 bulk density (BD). YTH304 had greater plasticity in nodal root elongation through the hardpan than IR64 under SMF, which was clearly expressed during rewatering. YTH304 also had greater soil water uptake below the hardpan during drought and greater shoot growth than IR64. The results imply that deep root system development during SMF was due to the plasticity in nodal root elongation through the hardpan expressed during rewatering rather than during drought periods. This is against the long standing belief that active root elongation through the hardpan happens during drought. This also implies a need to revisit current root screening methods to identify rice lines with good hardpan penetration ability.

Effect of tree roots on shallow-seated landslides

Treesearch

Kazutoki Abe Abe; Robert R. Ziemer

1991-01-01

Forest vegetation, especially tree roots, helps stabilize hillslopes by reinforcing soil shear strength. To evaluate the effect of tree roots on slope stability, information about the amount of roots and their strength should be known. A simulation model for the root distribution of Cryptomeria japonica was proposed where the number of roots in each 0.5-cm diameter...

Hydrologic Regulation of Plant Rooting Depth and Vice Versa

NASA Astrophysics Data System (ADS)

Fan, Y.; Miguez-Macho, G.

2017-12-01

How deep plant roots go and why may hold the answer to several questions regarding the co-evolution of terrestrial life and its environment. In this talk we explore how plant rooting depth responds to the hydrologic plumbing system in the soil/regolith/bedrocks, and vice versa. Through analyzing 2200 root observations of >1000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients, we found strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to groundwater capillary fringe. We explore the global significance of this framework using an inverse model, and the implications to the coevolution of deep roots and the CZ in the Early-Mid Devonian when plants colonized the upland environments.

Deep Phenotyping of Coarse Root Architecture in R. pseudoacacia Reveals That Tree Root System Plasticity Is Confined within Its Architectural Model

PubMed Central

Danjon, Frédéric; Khuder, Hayfa; Stokes, Alexia

2013-01-01

This study aims at assessing the influence of slope angle and multi-directional flexing and their interaction on the root architecture of Robinia pseudoacacia seedlings, with a particular focus on architectural model and trait plasticity. 36 trees were grown from seed in containers inclined at 0° (control) or 45° (slope) in a glasshouse. The shoots of half the plants were gently flexed for 5 minutes a day. After 6 months, root systems were excavated and digitized in 3D, and biomass measured. Over 100 root architectural traits were determined. Both slope and flexing increased significantly plant size. Non-flexed trees on 45° slopes developed shallow roots which were largely aligned perpendicular to the slope. Compared to the controls, flexed trees on 0° slopes possessed a shorter and thicker taproot held in place by regularly distributed long and thin lateral roots. Flexed trees on the 45° slope also developed a thick vertically aligned taproot, with more volume allocated to upslope surface lateral roots, due to the greater soil volume uphill. We show that there is an inherent root system architectural model, but that a certain number of traits are highly plastic. This plasticity will permit root architectural design to be modified depending on external mechanical signals perceived by young trees. PMID:24386227

Shallow landsliding, root reinforcement, and the spatial distribution of trees in the Oregon Coast Range

USGS Publications Warehouse

Roering, J.J.; Schmidt, K.M.; Stock, J.D.; Dietrich, W.E.; Montgomery, D.R.

2003-01-01

The influence of root reinforcement on shallow landsliding has been well established through mechanistic and empirical studies, yet few studies have examined how local vegetative patterns influence slope stability. Because root networks spread outward from trees, the species, size, and spacing of trees should influence the spatial distribution of root strength. We documented the distribution and characteristics of trees adjacent to 32 shallow landslides that occurred during 1996 in the Oregon Coast Range. Although broadly classified as a conifer-dominated forest, we observed sparse coniferous and abundant hardwood trees near landslide scars in an industrial forest (Mapleton) that experienced widespread burning in the 19th century. In industrial forests that were burned, selectively harvested, and not replanted (Elliott State Forest), swordfern was ubiquitous near landslides, and we observed similar numbers of live conifer and hardwood trees proximal to landslide scarps. We demonstrate that root strength quantified in landslide scarps and soil pits correlates with a geometry-based index of root network contribution derived from mapping the size, species, condition, and spacing of local trees, indicating that root strength can be predicted by mapping the distribution and characteristics of trees on potentially unstable slopes. In our study sites, landslides tend to occur in areas of reduced root strength, suggesting that to make site-specific predictions of landslide occurrence slope stability analyses must account for the diversity and distribution of vegetation in potentially unstable terrain.

Sorghum root-system classification in contrasting P environments reveals three main rooting types and root-architecture-related marker-trait associations.

PubMed

Parra-Londono, Sebastian; Kavka, Mareike; Samans, Birgit; Snowdon, Rod; Wieckhorst, Silke; Uptmoor, Ralf

2018-02-12

Roots facilitate acquisition of macro- and micronutrients, which are crucial for plant productivity and anchorage in the soil. Phosphorus (P) is rapidly immobilized in the soil and hardly available for plants. Adaptation to P scarcity relies on changes in root morphology towards rooting systems well suited for topsoil foraging. Root-system architecture (RSA) defines the spatial organization of the network comprising primary, lateral and stem-derived roots and is important for adaptation to stress conditions. RSA phenotyping is a challenging task and essential for understanding root development. In this study, 19 traits describing RSA were analysed in a diversity panel comprising 194 sorghum genotypes, fingerprinted with a 90-k single-nucleotide polymorphism (SNP) array and grown under low and high P availability. Multivariate analysis was conducted and revealed three different RSA types: (1) a small root system; (2) a compact and bushy rooting type; and (3) an exploratory root system, which might benefit plant growth and development if water, nitrogen (N) or P availability is limited. While several genotypes displayed similar rooting types in different environments, others responded to P scarcity positively by developing more exploratory root systems, or negatively with root growth suppression. Genome-wide association studies revealed significant quantitative trait loci (P < 2.9 × 10-6) on chromosomes SBI-02, SBI-03, SBI-05 and SBI-09. Co-localization of significant and suggestive (P < 5.7 × 10-5) associations for several traits indicated hotspots controlling root-system development on chromosomes SBI-02 and SBI-03. Sorghum genotypes with a compact, bushy and shallow root system provide potential adaptation to P scarcity in the field by allowing thorough topsoil foraging, while genotypes with an exploratory root system may be advantageous if N or water is the limiting factor, although such genotypes showed highest P uptake levels under the artificial conditions of the present study. © The Author(s) 2018. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

A Physically-Based and Distributed Tool for Modeling the Hydrological and Mechanical Processes of Shallow Landslides

NASA Astrophysics Data System (ADS)

Arnone, E.; Noto, L. V.; Dialynas, Y. G.; Caracciolo, D.; Bras, R. L.

2015-12-01

This work presents the capabilities of a model, i.e. the tRIBS-VEGGIE-Landslide, in two different versions, i.e. developed within a probabilistic framework and coupled with a root cohesion module. The probabilistic model treats geotechnical and soil retention curve parameters as random variables across the basin and estimates theoretical probability distributions of slope stability and the associated "factor of safety" commonly used to describe the occurrence of shallow landslides. The derived distributions are used to obtain the spatio-temporal dynamics of probability of failure, conditioned on soil moisture dynamics at each watershed location. The framework has been tested in the Luquillo Experimental Forest (Puerto Rico) where shallow landslides are common. In particular, the methodology was used to evaluate how the spatial and temporal patterns of precipitation, whose variability is significant over the basin, affect the distribution of probability of failure. Another version of the model accounts for the additional cohesion exerted by vegetation roots. The approach is to use the Fiber Bundle Model (FBM) framework that allows for the evaluation of the root strength as a function of the stress-strain relationships of bundles of fibers. The model requires the knowledge of the root architecture to evaluate the additional reinforcement from each root diameter class. The root architecture is represented with a branching topology model based on Leonardo's rule. The methodology has been tested on a simple case study to explore the role of both hydrological and mechanical root effects. Results demonstrate that the effects of root water uptake can at times be more significant than the mechanical reinforcement; and that the additional resistance provided by roots depends heavily on the vegetation root structure and length.

Shallow Roots Require Constant Watering: The Challenge of Sustained Impact in Educational Programs

ERIC Educational Resources Information Center

Rosen, Yigal; Perkins, David

2013-01-01

Socially-oriented educational programs often face societal barriers. Peace education in a region of prolonged conflict faces a negative socio-political environment that works against its effects. The media, leadership, educational system and other societal institutions continue to express a culture of conflict. Recent studies show that the effects…

Soil moisture causes dynamic adjustments to root reinforcement that reduce slope stability

Treesearch

Tristram C. Hales; Chelcy F. Miniat

2017-01-01

In steep soil-mantled landscapes, the initiation of shallow landslides is strongly controlled by the distribution of vegetation, whose roots reinforce the soil. The magnitude of root reinforcement depends on the number, diameter distribution, orientation and the mechanical properties of roots that cross potential failure planes. Understanding how these...

[Effects of soil wetting pattern on the soil water-thermal environment and cotton root water consumption under mulched drip irrigation].

PubMed

Li, Dong-wei; Li, Ming-si; Liu, Dong; Lyu, Mou-chao; Jia, Yan-hui

2015-08-01

Abstract: To explore the effects of soil wetting pattern on soil water-thermal environment and water consumption of cotton root under mulched drip irrigation, a field experiment with three drip intensities (1.69, 3.46 and 6.33 L · h(-1)), was carried out in Shihezi, Xinjiang Autonomous Region. The soil matric potential, soil temperature, cotton root distribution and water consumption were measured during the growing period of cotton. The results showed that the main factor influencing the soil temperature of cotton under plastic mulch was sunlight. There was no significant difference in the soil temperature and root water uptake under different treatments. The distribution of soil matrix suction in cotton root zone under plastic mulch was more homogeneous under ' wide and shallow' soil wetting pattern (W633). Under the 'wide and shallow' soil wetting pattern, the average difference of cotton root water consumption between inner row and outer row was 0.67 mm · d(-1), which was favorable to the cotton growing trimly at both inner and outer rows; for the 'narrow and deep' soil wetting pattern (W169), the same index was 0.88 mm · d(-1), which was unfavorable to cotton growing uniformly at both inner and outer rows. So, we should select the broad-shallow type soil wetting pattern in the design of drip irrigation under mulch.

Adaptation of fine roots to annual fertilization and irrigation in a 13-year-old Pinus pinaster stand.

PubMed

Bakker, M R; Jolicoeur, E; Trichet, P; Augusto, L; Plassard, C; Guinberteau, J; Loustau, D

2009-02-01

Effects of fertilization and irrigation on fine roots and fungal hyphae were studied in 13-year-old maritime pine (Pinus pinaster Aït. in Soland), 7 years after the initiation of the treatments. The fertilization trials consisted of a phosphorus treatment, a complete fertilizer treatment (N, P, K, Ca and Mg), and an unfertilized treatment (control). Fertilizers were applied annually and were adjusted according to foliar target values. Two irrigation regimes (no irrigation and irrigation of a set amount each day) were applied from May to October. Root samples to depths of 120 cm were collected in summer of 2005, and the biomass of small roots (diameter 2-20 mm) and fine roots (diameter

Root systems of chaparral shrubs.

PubMed

Kummerow, Jochen; Krause, David; Jow, William

1977-06-01

Root systems of chaparral shrubs were excavated from a 70 m 2 plot of a mixed chaparral stand located on a north-facing slope in San Diego County (32°54' N; 900 m above sea level). The main shrub species present were Adenostoma fasciculatum, Arctostaphylos pungens, Ceanothus greggii, Erigonum fasciculatum, and Haplopappus pinifolius. Shrubs were wired into their positions, and the soil was washed out beneath them down to a depth of approximately 60 cm, where impenetrable granite impeded further washing and root growth was severely restricted. Spacing and interweaving of root systems were recorded by an in-scale drawing. The roots were harvested in accordance to their depths, separated into diameter size classes for each species, and their dry weights measured. Roots of shrubs were largely confined to the upper soil levels. The roots of Eriogonum fasciculatum were concentrated in the upper soil layer. Roots of Adenostoma fasciculatum tended to be more superficial than those from Ceanothus greggii. It is hypothesized that the shallow soil at the excavation site impeded a clear depth zonation of the different root systems. The average dry weight root:shoot ratio was 0.6, ranging for the individual shrubs from 0.8 to 0.4. The root area always exceeded the shoot area, with the corresponding ratios ranging from 6 for Arctostaphylos pungens to 40 for Haplopappus pinifolius. The fine root density of 64 g dry weight per m 2 under the canopy was significantly higher than in the unshaded area. However, the corresponding value of 45 g dry weight per m 2 for the open ground is still high enough to make the establishment of other shrubs difficult.

Land Retirement as a Habitat Restoration Tool

NASA Astrophysics Data System (ADS)

Singh, P. N.; Wallender, W. W.

2007-12-01

Use of intensive irrigation in arid and semi-arid areas usually leads to gradual salination of the soil leading to crop yield decline. The salination problem is mitigated by applying irrigation in excess of crop requirements, which leaches the excess salt load to the groundwater. Insufficient natural or man made drainage to dispose off this saline recharge to the groundwater leads to a gradual rise in the water table and eventual encroachment upon the root zone. This may ultimately make the land unfit for any economically productive activity. The abandoned land may even lead to desertification with adverse environmental consequences. In drainage basins with no surface outflow (sometimes called closed basins), land retirement has been proposed as a management tool to address this problem. Land retirement essentially entails intentionally discontinuing irrigation of selected farmlands with the expectation that the shallow water table beneath those lands should drop and the root zone salinity level should decrease. In the San Joaquin Valley of California, intensive irrigation in conjunction with a shallow underlying layer of clay, known as the Corcoran clay layer and absence of a drainage system caused the root zone to become highly saline and the shallow water table to rise. Land retirement would remove from production those farmlands contributing the poorest quality subsurface drain water. Based on numerical models results, it was expected that with land retirement of substantial irrigated lands with poor drainage characteristics, beneath which lies shallow groundwater with high salt load, the shallow water table beneath those lands should drop. A part of the retired lands could also be used for wildlife habitat. A potential negative side of the land retirement option that has to be considered is that in certain enabling evapotranspiration, soil and water table conditions, water will be drawn upwards and evaporated, leaving a deposit of salts on the surface and in the root zone. Salt on the surface may then be wind blown to adjacent areas creating a potential environmental hazard. Using field results from the U.S. Department of the Interior Land Retirement Demonstration Project at the Tranquillity site located in western Fresno County, principles of mass balance in a fixed control volume, the HYDRUS-1D Software Package for Simulating the One-Dimensional Movement of Water, Heat, and Multiple Solutes in Variably-Saturated Media, and PEST, a model-independent parameter optimizer, we have investigated the processes of soil water and salinity movement in the root zone and the deep vadose zone. Various combinations of evapotranspiration, soil water retention properties, water table condition and top and bottom boundary condition were tested. We show that certain Land Retirement scenarios decrease shallow water table and soil water salinity and enhance development of native plants as a means to facilitate habitat restoration for certain combination of soil and bottom boundary condition. Other combinations are not sustainable.

An Experimental and Modeling Synthesis to Determine Seasonality of Hydraulic Redistribution in Semi-arid Region with Multispecies Vegetation Interaction

NASA Astrophysics Data System (ADS)

Lee, E.; Kumar, P.; Barron-Gafford, G.; Scott, R. L.

2016-12-01

A key challenge in critical zone science is to understand and predict the interaction between aboveground and belowground eco-hydrologic processes. Roots play an important role in linking aboveground plant ecophysiological processes, such as carbon, water and energy exchange with the atmosphere, and the belowground processes associated with soil moisture and carbon, and microbial and nutrient dynamics. This study analyzes aboveground and belowground interaction through hydraulic redistribution (HR), a phenomenon that roots serve as preferential pathways for water movement from wet to dry soil layers. HR process is simulated by multi-layer canopy model and compared with relative measurements from the field to study effect of HR on different plant species where Posopis velutina Woot. (velvet mesquite) and understory co-exist and share resources. The study site is one of Ameriflux sites: Santa Rita Mesquite savanna, Arizona, with a distinct dry season that facilitates occurrence of HR. We analyzed how two vegetation species share and utilize the limited amount of water by HR in both dry and wet seasons. During dry season, water moves from deep layer to shallow layer through roots and hydraulic lift (HL) occurs. During wet season, water moves from shallow layer to deep layer through roots and hydraulic descent (HD) occurs. About 40% of precipitation is transferred to deep soil layer with HD and 15% of that is transported back to shallow soil layer with HL in dry season. Assuming water supplied through HL supports evapotranspiration of plants, HL supports 10% of evapotranspiration. The ratio of mesquite and understory root conductivities is an important factor that determines how two plant species interact and share resources in water-limited environment. The sensitivity analysis of root conductivities suggests that high understory root conductivity facilitates water transported by HR and increases mesquite transpiration and photosynthesis. Understory transpiration and photosynthesis show increase with HR only in dry season when water is supplied to shallow layer through HL. With low understory root conductivity, understory looses the competition for water against mesquite and show decrease in transpiration and photosynthetic fluxes when HR is allowed.

The effect of Piriformospora indica on the root development of maize (Zea mays L.) and remediation of petroleum contaminated soil.

PubMed

Zamani, Javad; Hajabbasi, Mohammad Ali; Alaie, Ebrahim; Sepehri, Mozhgan; Leuchtmann, Adrian; Schulin, Rainer

2016-01-01

As the depth of soil petroleum contamination can vary substantially under field conditions, a rhizotron experiment was performed to investigate the influence of endophyte, P. indica, on maize growth and degradation of petroleum components in a shallow and a deep-reaching subsurface layer of a soil. For control, a treatment without soil contamination was also included. The degree in contamination and the depth to which it extended had a strong effect on the growth of the plant roots. Contaminated soil layers severely inhibited root growth thus many roots preferred to bypass the shallow contaminated layer and grow in the uncontaminated soil. While the length and branching pattern of these roots were similar to those of uncontaminated treatment. Inoculation of maize with P. indica could improve root distribution and root and shoot growth in all three contamination treatments. This inoculation also enhanced petroleum degradation in soil, especially in the treatment with deep-reaching contamination, consequently the accumulation of petroleum hydrocarbons (PAHs) in the plant tissues were increased.

Crop root behavior coordinates phosphorus status and neighbors: from field studies to three-dimensional in situ reconstruction of root system architecture.

PubMed

Fang, Suqin; Gao, Xiang; Deng, Yan; Chen, Xinping; Liao, Hong

2011-03-01

Root is a primary organ to respond to environmental stimuli and percept signals from neighboring plants. In this study, root responses in maize (Zea mays)/soybean (Glycine max) intercropping systems recognized soil phosphorus (P) status and neighboring plants in the field. Compared to self culture, the maize variety GZ1 intercropping with soybean HX3 grew much better on low P, but not in another maize variety, NE1. This genotypic response decreased with increasing distance between plants, suggesting that root interactions were important. We further conducted a detailed and quantitative study of root behavior in situ using a gel system to reconstruct the three-dimensional root architecture. The results showed that plant roots could integrate information on P status and root behavior of neighboring plants. When intercropped with its kin, maize or soybean roots grew close to each other. However, when maize GZ1 was grown with soybean HX3, the roots on each plant tended to avoid each other and became shallower on stratified P supply, but not found with maize NE1. Furthermore, root behavior in gel was highly correlated to shoot biomass and P content for field-grown plants grown in close proximity. This study provides new insights into the dynamics and complexity of root behavior and kin recognition among crop species in response to nutrient status and neighboring plants. These findings also indicate that root behavior not only depends on neighbor recognition but also on a coordinated response to soil P status, which could be the underlying cause for the different growth responses in the field.

Yield and Water Use Response of Cuphea to Irrigation in the Northern Corn Belt

USDA-ARS?s Scientific Manuscript database

Cuphea (C. viscosissima Jacq. X C. lanceolata W.T. Aiton, PSR23) is a new oilseed crop being developed as a source of medium-chain triglycerides. Cuphea has a sparse, shallow root system and low water use efficiency (WUE) making it potentially susceptible to water stress. Little is known about the y...

Adaptive Management Tools for Nitrogen: Nitrogen Index, Nitrogen Trading Tool and Nitrogen Losses Environmental Assessment Package (NLEAP-GIS)

USDA-ARS?s Scientific Manuscript database

Average nitrogen (N) use efficiencies are approximately fifty percent and can be even lower for shallower rooted systems grown on irrigated sandy soils. These low N use efficiencies need to be increased if reactive N losses to the environmental are to be reduced. Recently, USDA-NRCS identified Adapt...

Analysis of mandibular second molars with fused roots and shallow radicular grooves by using micro-computed tomography.

PubMed

Amoroso-Silva, Pablo; De Moraes, Ivaldo Gomes; Marceliano-Alves, Marilia; Bramante, Clovis Monteiro; Zapata, Ronald Ordinola; Hungaro Duarte, Marco Antonio

2018-01-01

This study aimed to describe the morphological and morphometric aspects of fused mandibular second molars with radicular shallow grooves using micro-computed tomography (CT). Eighty-eight mandibular second molars with fused roots were scanned in a micro-CT scanner at a voxel size of 19.6 μm. After reconstruction, only molars without C-shaped roots and presenting shallow radicular grooves were selected. 30 molars were chosen for further analysis. Canal cross-sections were classified according to Fan's modified classification (C1, C2, C3, and C4) and morphometric parameters at the apical region, examination of accessory foramina and tridimensional configuration were evaluated. Three-dimensional reconstructions indicated a higher prevalence of merging type ( n = 22). According to Fan's modified classification, the C4 configuration was predominant in the 3 apical mm. Roundness median values revealed a more round-shaped canals at 3 mm (0.72) than at 2 (0.63) and 1 (0.61) mm from the apex. High values of major and minor diameters were observed in the canals of these evaluated sections. In addition, few accessory apical foramina were observed at 1 and 2 mm from the apex. The average distance between last accessory foramina and the anatomic apex was 1.17 mm. A less complex internal anatomy is found when a mandibular second molar presents fused roots with shallow radicular grooves. The merging type canal was frequently observed. Moreover, the C4 configuration was predominant at a point 3 mm from the apex and presented rounded canals, large apical diameters, and few accessory foramina. The cervical and middle thirds presented C3 and C1 canal configurations most frequently. A minor morphological complexity is found when fused mandibular second molars present shallow radicular grooves.

Impact of axial root growth angles on nitrogen acquisition in maize depends on environmental conditions.

PubMed

Dathe, A; Postma, J A; Postma-Blaauw, M B; Lynch, J P

2016-09-01

Crops with reduced requirement for nitrogen (N) fertilizer would have substantial benefits in developed nations, while improving food security in developing nations. This study employs the functional structural plant model SimRoot to test the hypothesis that variation in the growth angles of axial roots of maize (Zea mays L.) is an important determinant of N capture. Six phenotypes contrasting in axial root growth angles were modelled for 42 d at seven soil nitrate levels from 10 to 250 kg ha(-1) in a sand and a silt loam, and five precipitation regimes ranging from 0·5× to 1·5× of an ambient rainfall pattern. Model results were compared with soil N measurements of field sites with silt loam and loamy sand textures. For optimal nitrate uptake, root foraging must coincide with nitrate availability in the soil profile, which depends on soil type and precipitation regime. The benefit of specific root architectures for efficient N uptake increases with decreasing soil N content, while the effect of soil type increases with increasing soil N level. Extreme root architectures are beneficial under extreme environmental conditions. Extremely shallow root systems perform well under reduced precipitation, but perform poorly with ambient and greater precipitation. Dimorphic phenotypes with normal or shallow seminal and very steep nodal roots performed well in all scenarios, and consistently outperformed the steep phenotypes. Nitrate uptake increased under reduced leaching conditions in the silt loam and with low precipitation. Results support the hypothesis that root growth angles are primary determinants of N acquisition in maize. With decreasing soil N status, optimal angles resulted in 15-50 % greater N acquisition over 42 d. Optimal root phenotypes for N capture varied with soil and precipitation regimes, suggesting that genetic selection for root phenotypes could be tailored to specific environments. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nobel, P.S.

Soil conditions were evaluated over the rooting depths for Agave deserti and Ferocactus acanthodes from the northwestern Sonoran Desert. These succulents have mean root depths of only 10 cm when adults and even shallower distribution when seedlings, which often occur is association with the nurse plant Hilaria rigida, which also has shallow roots. Maximum soil temperatures in the 2 cm beneath bare ground were predicted to exceed 65 C, which is lethal to the roots of A. deserti and F. acanthodes, whereas H. rigida reduced the maximum surface temperatures by over 10 C, providing a microhabitat suitable for seedling establishment.more » Water Availability was defined as the soil-to-plant drop in water potential, for periods when the plants could take up water, integrated over time. Below 4 cm under bare ground, simulated Water Availability increased slightly with depth (to 35 cm) for a wet year, was fairly constant for an average year, and decreased for a dry year, indicating that the shallow rooting habit is more advantageous in drier years. Water uptake by H. rigida substantially reduced Water Availability for seedlings associated with this nurse plant. On the other hand, a 66-90% higher soil nitrogen level occurred under H. rigida, possibly representing its harvesting of this macronutrient from a wide ground area. Phosphorus was slightly less abundant in the soil under H. rigida compared with under bare ground, the potassium level was substantially higher, and the sodium level was substantially lower. All four elements varied greatly with depth, N and K decreasing and P and Na increasing. Based on the known growth responses of A. deserti and F. acanthodes to these four elements, growth was predicted to be higher for plants in soil from the shallower layers, most of the differences being due to nitrogen.« less

Technical note: Application of geophysical tools for tree root studies in forest ecosystems in complex soils

NASA Astrophysics Data System (ADS)

Rodríguez-Robles, Ulises; Arredondo, Tulio; Huber-Sannwald, Elisabeth; Alfredo Ramos-Leal, José; Yépez, Enrico A.

2017-11-01

While semiarid forests frequently colonize rocky substrates, knowledge is scarce on how roots garner resources in these extreme habitats. The Sierra San Miguelito Volcanic Complex in central Mexico exhibits shallow soils and impermeable rhyolitic-rock outcrops, which impede water movement and root placement beyond the soil matrix. However, rock fractures, exfoliated rocks and soil pockets potentially permit downward water percolation and root growth. With ground-penetrating radar (GPR) and electrical resistivity tomography (ERT), two geophysical methods advocated by Jayawickreme et al. (2014) to advance root ecology, we advanced in the method development studying root and water distribution in shallow rocky soils and rock fractures in a semiarid forest. We calibrated geophysical images with in situ root measurements, and then extrapolated root distribution over larger areas. Using GPR shielded antennas, we identified both fine and coarse pine and oak roots from 0.6 to 7.5 cm diameter at different depths into either soil or rock fractures. We also detected, trees anchoring their trunks using coarse roots underneath rock outcroppings. With ERT, we tracked monthly changes in humidity at the soil-bedrock interface, which clearly explained spatial root distribution of both tree species. Geophysical methods have enormous potential in elucidating root ecology. More interdisciplinary research could advance our understanding in belowground ecological niche functions and their role in forest ecohydrology and productivity.

High-precision measurements of wetland sediment elevation. II The rod surface elevation table

USGS Publications Warehouse

Cahoon, D.R.; Lynch, J.C.; Perez, B.C.; Segura, B.; Holland, R.D.; Stelly, C.; Stephenson, G.; Hensel, P.

2002-01-01

A new high-precision device for measuring sediment elevation in emergent and shallow water wetland systems is described. The rod surface-elevation table (RSET) is a balanced, lightweight mechanical leveling device that attaches to both shallow ( 1 m in order to be stable. The pipe is driven to refusal but typically to a depth shallower than the rod bench mark because of greater surface resistance of the pipe. Thus, the RSET makes it possible to partition change in sediment elevation over shallower (e.g., the root zone) and deeper depths of the sediment profile than is possible with the SET. The confidence intervals for the height of an individual pin measured by two different operators with the RSET under laboratory conditions were A? 1.0 and A? 1.5 mm. Under field conditions, confidence intervals for the measured height of an individual pin ranged from A? 1.3 mm in a mangrove forest up to A? 4.3 mm in a salt marsh.

Comparing methods for inducing root rot of Rhododendron with Phytophthora cinnamomi and P. plurivora

USDA-ARS?s Scientific Manuscript database

Root rot, caused by Phytophthora cinnamomi and P. plurivora in containerized Rhododendron, can cause significant losses in the nursery industry. Studies commonly use a 48 h flooding event to stimulate root infection. While flooding rarely occurs in container nurseries, plants may sit in a shallow pu...

Distribution of Quercus agrifolia mycorrhizae deep within weathered bedrock: a potential mechanism for transport of stored water

Treesearch

M. Bornyasz; R. Graham; M. Allen

2002-01-01

In southwestern California, Quercus agrifolia distribution closely matches regions of granitic regolith. High annual evapotranspiration demand and inherent shallow soil conditions lead to a dependence on a deep rooting system and an ability to access water from deep within the regolith. Most of the plant available water in weathered granitic rock is...

Spatial variation of corn canopy temperature as dependent upon soil texture and crop rooting characteristics

NASA Technical Reports Server (NTRS)

Choudhury, B. J.

1983-01-01

A soil plant atmosphere model for corn (Zea mays L.) together with the scaling theory for soil hydraulic heterogeneity are used to study the sensitivity of spatial variation of canopy temperature to field averaged soil texture and crop rooting characteristics. The soil plant atmosphere model explicitly solves a continuity equation for water flux resulting from root water uptake, changes in plant water storage and transpirational flux. Dynamical equations for root zone soil water potential and the plant water storage models the progressive drying of soil, and day time dehydration and night time hydration of the crop. The statistic of scaling parameter which describes the spatial variation of soil hydraulic conductivity and matric potential is assumed to be independent of soil texture class. The field averaged soil hydraulic characteristics are chosen to be representative of loamy sand and clay loam soils. Two rooting characteristics are chosen, one shallow and the other deep rooted. The simulation shows that the range of canopy temperatures in the clayey soil is less than 1K, but for the sandy soil the range is about 2.5 and 5.0 K, respectively, for the shallow and deep rooted crops.

Root reinforcement and its implications in shallow landsliding susceptibility on a small alpine catchment

NASA Astrophysics Data System (ADS)

Morandi, M. C.; Farabegoli, E.; Onorevoli, G.

2012-04-01

Roots shear resistance offers a considerable contribution to hill-slope stability on vegetated terrains. Through the pseudo-cohesion of shrubs, trees and turf's roots, the geomechanical properties of soils can be drastically increased, exerting a positive influence on the hillslope stability. We analysed the shallow landsliding susceptibility of a small alpine catchment (Duron valley, Central Dolomites, Italy) that we consider representative of a wide altitude belt of the Dolomites (1800 - 2400 m a.s.l). The catchment is mostly mantled by grass (Nardetum strictae s.l.), with clustered shrubs (Rhododendron hirsutum and Juniperus nana), and trees (Pinus cembra, Larix decidua and Picea abies). The soil depth, investigated with direct and indirect methods, ranges from 0 to 180 cm, with its peak at the hollow axes. Locally, the bedrock, made of Triassic volcanic rocks, is deeply incised by the Holocene drainage network. Intensive grazing of cows and horses pervades the catchment area and cattle-trails occupy ca 20% of the grass cover. We used laboratory and field tests to characterize the geotechnical properties of these alpine soils; moreover we designed and tested an experimental device that measures, in situ, the shear strengths of the grass mantle. In the study area we mapped 18 shallow landslides, mostly related to road cuts and periodically reactivated as retrogressive landslides. The triggering mechanisms of these shallow landslides were qualitatively analysed at large scale and modelled at smaller scale. We used SHALSTAB to model the shallow landsliding susceptibility of the catchment at the basin scale and SLIDE (RocScience) to compute the Safety Factor at the versant scale. Qualitative management solutions are provided, in order to reduce the shallow landsliding susceptibility risk in this alpine context.

Hydraulic redistribution in a Mediterranean wild olive-pasture ecosystem: A key to tree survival and a limit to tree-patch size.

NASA Astrophysics Data System (ADS)

Curreli, Matteo; Montaldo, Nicola; Oren, Ram

2017-04-01

In water-limited environments, such as certain Mediterranean ecosystems, trees may survive prolonged droughts by uptake of water by dimorphic root system: deep roots, growing vertically, and shallower lateral roots, extending beyond the crown projection of tree clumps into zones of seasonal vegetative cover. In such ecosystems, therefore, the balance between soil water under tree canopy versus that in treeless patches plays a crucial role on sustaining tree physiological performance and surface water fluxes during drought periods. The study has been performed at the Orroli site, Sardinia (Italy). The landscape is covered by patchy vegetation: wild olives trees in clumps, herbaceous species, drying to bare soil in late spring. The climate is Mediterranean maritime with long droughts from May to October, and an historical mean yearly rain of about 670 mm concentrated in the autumn and winter months. Soil depth varies from 10 to 50 cm, with underlying fractured rocky layer of basalt. From 2003, a 10 meters micrometeorological tower equipped with eddy-covariance system has been used for measuring water and energy surface fluxes, as well as key state variables (e.g. leaf and soil skin temperature, radiations, air humidity and wind velocity). Soil moisture was measured with five soil water reflectometers (two below the olive canopy and three in patches with pasture vegetation alternating with bare soil in the dry season). Early analyses show that wild olive continue to transpire even as the soil dries and the pasture desiccates. In 2015, to estimate plant water use and in the context of soil water dynamic, 33 Granier-type thermal dissipation probes were installed for estimating sap flow in stems of wild olives trees, 40 cm aboveground, in representative trees over the eddy-covariance foot-print. The combined data of sap flow, soil water content, and eddy covariance, revealed hydraulic redistribution system through the plant and the soil at different layers, allowing to quantify the reliance of the system on different horizontally and vertically differentiated soil compartments. Results shows that during light hours, until transpiration decreases in midday, shallow roots uptake deplete the water content in the upper layer. As transpiration decreases, hydraulically redistributed water provides for both transpiration of wild olives and recharge of shallow soil layers. This buffering, attained by long recharge time of shallow soil, allow woody vegetation to remain physiologically active during very dry conditions. The hydraulically redistributed water is the main source of water for evapotranspiration in the dry summer, and its relevance increases with decreasing water availability. Thus, the spatial coverage and distribution of tree clumps is regulated by the soil water available in the inter-tree clump areas, suggesting that, if Mediterranean areas dry as predicted by IPCC, the proportion of an area occupied by tree clumps will shrink in the future, with predictable consequences to ecosystem services.

Slope Root biomechanical properties and their contribution to soil reinforcement in the Landslide-prone region, the Bailong River Basin

NASA Astrophysics Data System (ADS)

Wang, X.; Hong, M.; Huang, Z.; Zhao, Y.; Zhang, Y.

2016-12-01

The presence of vegetation increases soil burden stability along slopes and therefore reduces soil erosion. The contribution of the vegetation is due to the root's mechanical (reinforcing soil shear resistance) controls on superficial landslide. The study focused on the biotechnical characteristics of the root system of commonly grown shrub species in the Bailong River Basin, one of the most serious geo-hazards regions in China. The aim of this paper is to increase the understanding on slope root biomechanical properties of different shrubs species and their contribution to soil reinforcement. Field investigations were carried out to estimate the root density distribution with depth (root area ratio). Laboratory tests were conducted to measure the root tensile breaking force and the root tensile strength. Root tensile strength measurements were carried out on single root specimens and root area ratio was estimated analyzing the whole root system. The direct shear tests were used to quantify the soil mechanical reinforcement. The improvement of soil mechanical properties obtained by the presence of shrubs was estimated using two different models(the Fibrt Bundle Model and the Finite Element Model). The results indicates that the soil-root system shear strength of Robinia pseudoacacia Linn (L.), Populus simonii (L.), Olea europaea (L.), and Zanthoxylum bungeanum (L.) increment ranged from 62.4 to 26.3 kPa and its effect on the slope stability was significantly different. Robinia pseudoacacia Linn (L.) roots presented the highest tensile strength and soil reinforcement values. Similarly at each considered depth Robinia pseudoacacia Linn (L.) showed that the highest soil reinforcement effect (1461N) while Olea europaea (L.) presented the lowest soil reinforcement effect (1329N). The finite element model shows that the FoS of Zanthoxylum bungeanum (L.) is the largest of these plants when considering root additional cohesion. This research can provide a basic theory of afforestation mode in spatial distribution and hence control shallow landslide.

Hierarchical traits distances explain grassland Fabaceae species' ecological niches distances.

PubMed

Fort, Florian; Jouany, Claire; Cruz, Pablo

2015-01-01

Fabaceae species play a key role in ecosystem functioning through their capacity to fix atmospheric nitrogen via their symbiosis with Rhizobium bacteria. To increase benefits of using Fabaceae in agricultural systems, it is necessary to find ways to evaluate species or genotypes having potential adaptations to sub-optimal growth conditions. We evaluated the relevance of phylogenetic distance, absolute trait distance and hierarchical trait distance for comparing the adaptation of 13 grassland Fabaceae species to different habitats, i.e., ecological niches. We measured a wide range of functional traits (root traits, leaf traits, and whole plant traits) in these species. Species phylogenetic and ecological distances were assessed from a species-level phylogenetic tree and species' ecological indicator values, respectively. We demonstrated that differences in ecological niches between grassland Fabaceae species were related more to their hierarchical trait distances than to their phylogenetic distances. We showed that grassland Fabaceae functional traits tend to converge among species with the same ecological requirements. Species with acquisitive root strategies (thin roots, shallow root systems) are competitive species adapted to non-stressful meadows, while conservative ones (coarse roots, deep root systems) are able to tolerate stressful continental climates. In contrast, acquisitive species appeared to be able to tolerate low soil-P availability, while conservative ones need high P availability. Finally we highlight that traits converge along the ecological gradient, providing the assumption that species with similar root-trait values are better able to coexist, regardless of their phylogenetic distance.

Hierarchical traits distances explain grassland Fabaceae species' ecological niches distances

PubMed Central

Fort, Florian; Jouany, Claire; Cruz, Pablo

2015-01-01

Fabaceae species play a key role in ecosystem functioning through their capacity to fix atmospheric nitrogen via their symbiosis with Rhizobium bacteria. To increase benefits of using Fabaceae in agricultural systems, it is necessary to find ways to evaluate species or genotypes having potential adaptations to sub-optimal growth conditions. We evaluated the relevance of phylogenetic distance, absolute trait distance and hierarchical trait distance for comparing the adaptation of 13 grassland Fabaceae species to different habitats, i.e., ecological niches. We measured a wide range of functional traits (root traits, leaf traits, and whole plant traits) in these species. Species phylogenetic and ecological distances were assessed from a species-level phylogenetic tree and species' ecological indicator values, respectively. We demonstrated that differences in ecological niches between grassland Fabaceae species were related more to their hierarchical trait distances than to their phylogenetic distances. We showed that grassland Fabaceae functional traits tend to converge among species with the same ecological requirements. Species with acquisitive root strategies (thin roots, shallow root systems) are competitive species adapted to non-stressful meadows, while conservative ones (coarse roots, deep root systems) are able to tolerate stressful continental climates. In contrast, acquisitive species appeared to be able to tolerate low soil-P availability, while conservative ones need high P availability. Finally we highlight that traits converge along the ecological gradient, providing the assumption that species with similar root-trait values are better able to coexist, regardless of their phylogenetic distance. PMID:25741353

The variability of root cohesion as an influence on shallow landslide susceptibility in the Oregon Coast Range

USGS Publications Warehouse

Schmidt, K.M.; Roering, J.J.; Stock, J.D.; Dietrich, W.E.; Montgomery, D.R.; Schaub, T.

2001-01-01

Decades of quantitative measurement indicate that roots can mechanically reinforce shallow soils in forested landscapes. Forests, however, have variations in vegetation species and age which can dominate the local stability of landslide-initiation sites. To assess the influence of this variability on root cohesion we examined scarps of landslides triggered during large storms in February and November of 1996 in the Oregon Coast Range and hand-dug soil pits on stable ground. At 41 sites we estimated the cohesive reinforcement to soil due to roots by determining the tensile strength, species, depth, orientation, relative health, and the density of roots ???1 mm in diameter within a measured soil area. We found that median lateral root cohesion ranges from 6.8-23.2 kPa in industrial forests with significant understory and deciduous vegetation to 25.6-94.3 kPa in natural forests dominated by coniferous vegetation. Lateral root cohesion in clearcuts is uniformly ???10 kPa. Some 100-year-old industrial forests have species compositions, lateral root cohesion, and root diameters that more closely resemble 10-year-old clearcuts than natural forests. As such, the influence of root cohesion variability on landslide susceptibility cannot be determined solely from broad age classifications or extrapolated from the presence of one species of vegetation. Furthermore, the anthropogenic disturbance legacy modifies root cohesion for at least a century and should be considered when comparing contemporary landslide rates from industrial forests with geologic background rates.

Measuring and Modeling Root Distribution and Root Reinforcement in Forested Slopes for Slope Stability Calculations

NASA Astrophysics Data System (ADS)

Cohen, D.; Giadrossich, F.; Schwarz, M.; Vergani, C.

2016-12-01

Roots provide mechanical anchorage and reinforcement of soils on slopes. Roots also modify soil hydrological properties (soil moisture content, pore-water pressure, preferential flow paths) via subsurface flow path associated with root architecture, root density, and root-size distribution. Interactions of root-soil mechanical and hydrological processes are an important control of shallow landslide initiation during rainfall events and slope stability. Knowledge of root-distribution and root strength are key components to estimate slope stability in vegetated slopes and for the management of protection forest in steep mountainous area. We present data that show the importance of measuring root strength directly in the field and present methods for these measurements. These data indicate that the tensile force mobilized in roots depends on root elongation (a function of soil displacement), root size, and on whether roots break in tension of slip out of the soil. Measurements indicate that large lateral roots that cross tension cracks at the scarp are important for slope stability calculations owing to their large tensional resistance. These roots are often overlooked and when included, their strength is overestimated because extrapolated from measurements on small roots. We present planned field experiments that will measure directly the force held by roots of different sizes during the triggering of a shallow landslide by rainfall. These field data are then used in a model of root reinforcement based on fiber-bundle concepts that span different spacial scales, from a single root to the stand scale, and different time scales, from timber harvest to root decay. This model computes the strength of root bundles in tension and in compression and their effect on soil strength. Up-scaled to the stand the model yields the distribution of root reinforcement as a function of tree density, distance from tree, tree species and age with the objective of providing quantitative estimates of tree root reinforcement for best management practice of protection forests.

Do limited cold tolerance and shallow depth of roots contribute to yellow-cedar decline?

Treesearch

Paul G. Schaberg; David V. D' Amore; Paul E. Hennon; Joshua M. Halman; Gary J. Hawley

2011-01-01

It has been proposed that yellow-cedar (Callitropsis nootkatensis) decline is initiated by the freezing injury of roots when soils freeze during times of limited snowpack. To explain the unique susceptibility of yellow-cedar in contrast to co-occurring species, yellow-cedar roots would need to be less cold tolerant and/or more concentrated in upper...

Differential rates of vertical accretion and elevation change among aerial root types in Micronesian mangrove forests

USGS Publications Warehouse

Krauss, K.W.; Allen, J.A.; Cahoon, D.R.

2003-01-01

Root systems in mangrove swamps have captured the attention of scientists for decades. Among the postulated roles of root structures include a contribution to the geomorphological stability of mangrove soils through sediment trapping and binding. In this study, we used feldspar marker horizons and sediment pins to investigate the influence of three different functional root types - prop roots in Rhizophora spp., root knees in Bruguiera gymnorrhiza, and pneumatophores in Sonneratia alba - on vertical accretion and elevation change in three mangrove forests in the Federated States of Micronesia. Prop roots facilitated vertical accretion (11.0 mm year-1) more than pneumatophores or bare soil controls (mean, 8.3 mm year-1). Sediment elevation, on the other hand, increased at an average rate of only 1.3 mm year-1 across all root types, with rate differences by root type, ranging from -0.2 to 3.4 mm year-1, being detected within river basins. This investigation demonstrates that prop roots can assist in the settling of suspended sediments from estuarine waters, yet prop root structures are not as successful as pneumatophores in maintaining sediment elevation over 2.5 years. As root densities increase over time, an increase in turbulence-induced erosion and in shallow subsidence as organic peat layers form is expected in Micronesian mangrove forests. ?? 2003 Elsevier Science B.V. All rights reserved.

Modelling water uptake efficiency of root systems

NASA Astrophysics Data System (ADS)

Leitner, Daniel; Tron, Stefania; Schröder, Natalie; Bodner, Gernot; Javaux, Mathieu; Vanderborght, Jan; Vereecken, Harry; Schnepf, Andrea

2016-04-01

Water uptake is crucial for plant productivity. Trait based breeding for more water efficient crops will enable a sustainable agricultural management under specific pedoclimatic conditions, and can increase drought resistance of plants. Mathematical modelling can be used to find suitable root system traits for better water uptake efficiency defined as amount of water taken up per unit of root biomass. This approach requires large simulation times and large number of simulation runs, since we test different root systems under different pedoclimatic conditions. In this work, we model water movement by the 1-dimensional Richards equation with the soil hydraulic properties described according to the van Genuchten model. Climatic conditions serve as the upper boundary condition. The root system grows during the simulation period and water uptake is calculated via a sink term (after Tron et al. 2015). The goal of this work is to compare different free software tools based on different numerical schemes to solve the model. We compare implementations using DUMUX (based on finite volumes), Hydrus 1D (based on finite elements), and a Matlab implementation of Van Dam, J. C., & Feddes 2000 (based on finite differences). We analyse the methods for accuracy, speed and flexibility. Using this model case study, we can clearly show the impact of various root system traits on water uptake efficiency. Furthermore, we can quantify frequent simplifications that are introduced in the modelling step like considering a static root system instead of a growing one, or considering a sink term based on root density instead of considering the full root hydraulic model (Javaux et al. 2008). References Tron, S., Bodner, G., Laio, F., Ridolfi, L., & Leitner, D. (2015). Can diversity in root architecture explain plant water use efficiency? A modeling study. Ecological modelling, 312, 200-210. Van Dam, J. C., & Feddes, R. A. (2000). Numerical simulation of infiltration, evaporation and shallow groundwater levels with the Richards equation. Journal of Hydrology, 233(1), 72-85. Javaux, M., Schröder, T., Vanderborght, J., & Vereecken, H. (2008). Use of a three-dimensional detailed modeling approach for predicting root water uptake. Vadose Zone Journal, 7(3), 1079-1088.

Crustal imaging of western Michoacán and the Jalisco Block, Mexico, from Ambient Seismic Noise

NASA Astrophysics Data System (ADS)

Spica, Zack; Cruz-Atienza, Víctor M.; Reyes-Alfaro, Gabriel; Legrand, Denis; Iglesias-Mendoza, Arturo

2014-12-01

Detailed crustal imaging of western Michoacán and the Jalisco Block is obtained from ambient noise tomography. Results show a deep and well-delineated volcanic system below the Colima volcano complex, rooting up to ~ 22 km depth, with a shallow magmatic chamber constrained to the first ~ 7 km. A shallow low-velocity system to the south of the Chapala rift and west of the Michoacán-Guanajuato volcanic field merges, underneath the Colima rift, with the Colima volcano system at about 20 km depth, honoring the geometry of the Trans-Mexican Volcanic Belt. For depths greater than ~30 km, low-velocity features become parallel to the slab strike, right beneath the Mascota, Ayutla and Tapalpa volcanic fields, suggesting the presence of the mantle wedge above the Rivera plate. All mentioned low-velocity bodies are spatially correlated with the superficial volcanic activity suggesting their magmatic origin so that, the shallower these bodies, the younger are the associated volcanic deposits. Along the coast, different depths of the uppermost layer of the Rivera and the Cocos plates suggest that the latter plate subducts with an angle ~ 9° steeper than the former.

Relating groundwater to seasonal wetlands in southeastern Wisconsin, USA

USGS Publications Warehouse

Skalbeck, J.D.; Reed, D.M.; Hunt, R.J.; Lambert, J.D.

2009-01-01

Historically, drier types of wetlands have been difficult to characterize and are not well researched. Nonetheless, they are considered to reflect the precipitation history with little, if any, regard for possible relation to groundwater. Two seasonal coastal wetland types (wet prairie, sedge meadow) were investigated during three growing seasons at three sites in the Lake Michigan Basin, Wisconsin, USA. The six seasonal wetlands were characterized using standard soil and vegetation techniques and groundwater measurements from the shallow and deep systems. They all met wetland hydrology criteria (e.g., water within 30 cm of land surface for 5% of the growing season) during the early portion of the growing season despite the lack of appreciable regional groundwater discharge into the wetland root zones. Although root-zone duration analyses did not fit a lognormal distribution previously noted in groundwater-dominated wetlands, they were able to discriminate between the plant communities and showed that wet prairie communities had shorter durations of continuous soil saturation than sedge meadow communities. These results demonstrate that the relative rates of groundwater outflows can be important for wetland hydrology and resulting wetland type. Thus, regional stresses to the shallow groundwater system such as pumping or low Great Lake levels can be expected to affect even drier wetland types. ?? Springer-Verlag 2008.

A nonpathogenic Fusarium oxysporum strain enhances phytoextraction of heavy metals by the hyperaccumulator Sedum alfredii Hance.

PubMed

Zhang, Xincheng; Lin, Li; Chen, Mingyue; Zhu, Zhiqiang; Yang, Weidong; Chen, Bao; Yang, Xiaoe; An, Qianli

2012-08-30

Low biomass and shallow root systems limit the application of heavy metal phytoextraction by hyperaccumulators. Plant growth-promoting microbes may enhance hyperaccumulators'phytoextraction. A heavy metal-resistant fungus belonged to the Fusarium oxysporum complex was isolated from the Zn/Cd co-hyperaccumulator Sedum alfredii Hance grown in a Pb/Zn mined area. This Fusarium fungus was not pathogenic to plants but promoted host growth. Hydroponic experiments showed that 500 μM Zn(2+) or 50 μM Cd(2+) combined with the fungus increased root length, branches, and surface areas, enhanced nutrient uptake and chlorophyll synthesis, leading to more vigorous hyperaccumulators with greater root systems. Soil experiments showed that the fungus increased root and shoot biomass and S. alfredii-mediated heavy metal availabilities, uptake, translocation or concentrations, and thus increased phytoextraction of Zn (144% and 44%), Cd (139% and 55%), Pb (84% and 85%) and Cu (63% and 77%) from the original Pb/Zn mined soil and a multi-metal contaminated paddy soil. Together, the nonpathogenic Fusarium fungus was able to increase S. alfredii root systems and function, metal availability and accumulation, plant biomass, and thus phytoextraction efficiency. This study showed a great application potential for culturable indigenous fungi other than symbiotic mycorrhizas to enhance the phytoextraction by hyperaccumulators. Copyright © 2012 Elsevier B.V. All rights reserved.

Feedbacks between soil penetration resistance, root architecture and water uptake limit water accessibility and crop growth - A vicious circle.

PubMed

Colombi, Tino; Torres, Lorena Chagas; Walter, Achim; Keller, Thomas

2018-06-01

Water is the most limiting resource for global crop production. The projected increase of dry spells due to climate change will further increase the problem of water limited crop yields. Besides low water abundance and availability, water limitations also occur due to restricted water accessibility. Soil penetration resistance, which is largely influenced by soil moisture, is the major soil property regulating root elongation and water accessibility. Until now the interactions between soil penetration resistance, root system properties, water uptake and crop productivity are rarely investigated. In the current study we quantified how interactive effects between soil penetration resistance, root architecture and water uptake affect water accessibility and crop productivity in the field. Maize was grown on compacted and uncompacted soil that was either tilled or remained untilled after compaction, which resulted in four treatments with different topsoil penetration resistance. Higher topsoil penetration resistance caused root systems to be shallower. This resulted in increased water uptake from the topsoil and hence topsoil drying, which further increased the penetration resistance in the uppermost soil layer. As a consequence of this feedback, root growth into deeper soil layers, where water would have been available, was reduced and plant growth decreased. Our results demonstrate that soil penetration resistance, root architecture and water uptake are closely interrelated and thereby determine the potential of plants to access soil water pools. Hence, these interactions and their feedbacks on water accessibility and crop productivity have to be accounted for when developing strategies to alleviate water limitations in cropping systems. Copyright © 2018 Elsevier B.V. All rights reserved.

Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress

PubMed Central

York, Larry M.; Galindo-Castañeda, Tania; Schussler, Jeffrey R.; Lynch, Jonathan P.

2015-01-01

Increasing the nitrogen use efficiency of maize is an important goal for food security and agricultural sustainability. In the past 100 years, maize breeding has focused on yield and above-ground phenes. Over this period, maize cultivation has changed from low fertilizer inputs and low population densities to intensive fertilization and dense populations. The authors hypothesized that through indirect selection the maize root system has evolved phenotypes suited to more intense competition for nitrogen. Sixteen maize varieties representing commercially successful lines over the past century were planted at two nitrogen levels and three planting densities. Root systems of the most recent material were 7 º more shallow, had one less nodal root per whorl, had double the distance from nodal root emergence to lateral branching, and had 14% more metaxylem vessels, but total mextaxylem vessel area remained unchanged because individual metaxylem vessels had 12% less area. Plasticity was also observed in cortical phenes such as aerenchyma, which increased at greater population densities. Simulation modelling with SimRoot demonstrated that even these relatively small changes in root architecture and anatomy could increase maize shoot growth by 16% in a high density and high nitrogen environment. The authors concluded that evolution of maize root phenotypes over the past century is consistent with increasing nitrogen use efficiency. Introgression of more contrasting root phene states into the germplasm of elite maize and determination of the functional utility of these phene states in multiple agronomic conditions could contribute to future yield gains. PMID:25795737

Hydraulic Redistribution: A Modeling Perspective

NASA Astrophysics Data System (ADS)

Daly, E.; Verma, P.; Loheide, S. P., III

2014-12-01

Roots play a key role in the soil water balance. They extract and transport water for transpiration, which usually represents the most important soil water loss in vegetated areas, and can redistribute soil water, thereby increasing transpiration rates and enhancing root nutrient uptake. We present here a two-dimensional model capable of describing two key aspects of root water uptake: root water compensation and hydraulic redistribution. Root water compensation is the ability of root systems to respond to the reduction of water uptake from areas of the soil with low soil water potential by increasing the water uptake from the roots in soil parts with higher water potential. Hydraulic redistribution is a passive transfer of water through the root system from areas of the soil with greater water potential to areas with lower water potential. Both mechanisms are driven by gradients of water potential in the soil and the roots. The inclusion of root water compensation and hydraulic redistribution in models can be achieved by describing root water uptake as a function of the difference in water potential between soil and root xylem. We use a model comprising the Richards equation for the water flow in variably saturated soils and the Darcy's equation for the water flow in the xylem. The two equations are coupled via a sink term, which is assumed to be proportional to the difference between soil and xylem water potentials. The model is applied in two case studies to describe vertical and horizontal hydraulic redistribution and the interaction between vegetation with different root depths. In the case of horizontal redistribution, the model is used to reproduce the fluxes of water across the root system of a tree subjected to uneven irrigation. This example can be extended to situations when only part of the root system has access to water, such as vegetation near creeks, trees at the edge of forests, and street trees in urban areas. The second case is inspired by recent agro-ecosystems experiments that combined different vegetation species to increase crop yield. The presence of deep rooted plants (nursing species) near shallow rooted crops (nursed species) enhanced crop growth thanks to vertical and horizontal hydraulic redistribution. The model is able to reproduce the patterns of water redistribution observed in this scenario.

Comparing simple root phenotyping methods on a core set of rice genotypes.

PubMed

Shrestha, R; Al-Shugeairy, Z; Al-Ogaidi, F; Munasinghe, M; Radermacher, M; Vandenhirtz, J; Price, A H

2014-05-01

Interest in belowground plant growth is increasing, especially in relation to arguments that shallow-rooted cultivars are efficient at exploiting soil phosphorus while deep-rooted ones will access water at depth. However, methods for assessing roots in large numbers of plants are diverse and direct comparisons of methods are rare. Three methods for measuring root growth traits were evaluated for utility in discriminating rice cultivars: soil-filled rhizotrons, hydroponics and soil-filled pots whose bottom was sealed with a non-woven fabric (a potential method for assessing root penetration ability). A set of 38 rice genotypes including the OryzaSNP set of 20 cultivars, additional parents of mapping populations and products of marker-assisted selection for root QTLs were assessed. A novel method of image analysis for assessing rooting angles from rhizotron photographs was employed. The non-woven fabric was the easiest yet least discriminatory method, while the rhizotron was highly discriminatory and allowed the most traits to be measured but required more than three times the labour of the other methods. The hydroponics was both easy and discriminatory, allowed temporal measurements, but is most likely to suffer from artefacts. Image analysis of rhizotrons compared favourably to manual methods for discriminating between cultivars. Previous observations that cultivars from the indica subpopulation have shallower rooting angles than aus or japonica cultivars were confirmed in the rhizotrons, and indica and temperate japonicas had lower maximum root lengths in rhizotrons and hydroponics. It is concluded that rhizotrons are the preferred method for root screening, particularly since root angles can be assessed. © 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.

Predicting forest dieback in Maine, USA: a simple model based on soil frost and drought

Treesearch

Allan N.D. Auclair; Warren E. Heilman; Blondel Brinkman

2010-01-01

Tree roots of northern hardwoods are shallow rooted, winter active, and minimally frost hardened; dieback is a winter freezing injury to roots incited by frost penetration in the absence of adequate snow cover and exacerbated by drought in summer. High soil water content greatly increases conductivity of frost. We develop a model based on the sum of z-scores of soil...

Salinization of the soil solution decreases the further accumulation of salt in the root zone of the halophyte Atriplex nummularia Lindl. growing above shallow saline groundwater.

PubMed

Alharby, Hesham F; Colmer, Timothy D; Barrett-Lennard, Edward G

2018-01-01

Water use by plants in landscapes with shallow saline groundwater may lead to the accumulation of salt in the root zone. We examined the accumulation of Na + and Cl - around the roots of the halophyte Atriplex nummularia Lindl. and the impacts of this increasing salinity for stomatal conductance, water use and growth. Plants were grown in columns filled with a sand-clay mixture and connected at the bottom to reservoirs containing 20, 200 or 400 mM NaCl. At 21 d, Na + and Cl - concentrations in the soil solution were affected by the salinity of the groundwater, height above the water table and the root fresh mass density at various soil depths (P < 0.001). However, by day 35, the groundwater salinity and height above the water table remained significant factors, but the root fresh mass density was no longer significant. Regression of data from the 200 and 400 mM NaCl treatments showed that the rate of Na + accumulation in the soil increased until the Na + concentration reached ~250 mM within the root zone; subsequent decreases in accumulation were associated with decreases in stomatal conductance. Salinization of the soil solution therefore had a feedback effect on further salinization within the root zone. © 2017 John Wiley & Sons Ltd.

Woody plant roots fail to penetrate a clay-lined landfill: Managment implications

NASA Astrophysics Data System (ADS)

Robinson, George R.; Handel, Steven N.

1995-01-01

In many locations, regulatory agencies do not permit tree planting above landfills that are sealed with a capping clay, because roots might penetrate the clay barrier and expose landfill contents to leaching. We find, however, no empirical or theoretical basis for this restriction, and instead hypothesize that plant roots of any kind are incapable of penetrating the dense clays used to seal landfills. As a test, we excavated 30 trees and shrubs, of 12 species, growing over a clay-lined municipal sanitary landfill on Staten Island, New York. The landfill had been closed for seven years, and featured a very shallow (10 to 30-cm) soil layer over a 45-cm layer of compacted grey marl (Woodbury series) clay. The test plants had invaded naturally from nearby forests. All plants examined—including trees as tall as 6 m—had extremely shallow root plates, with deformed tap roots that grew entirely above and parallel to the clay layer. Only occasional stubby feeder roots were found in the top 1 cm of clay, and in clay cracks at depths to 6 cm, indicating that the primary impediment to root growth was physical, although both clay and the overlying soil were highly acidic. These results, if confirmed by experimental research should lead to increased options for the end use of many closed sanitary landfills.

A conceptual approach to approximate tree root architecture in infinite slope models

NASA Astrophysics Data System (ADS)

Schmaltz, Elmar; Glade, Thomas

2016-04-01

Vegetation-related properties - particularly tree root distribution and coherent hydrologic and mechanical effects on the underlying soil mantle - are commonly not considered in infinite slope models. Indeed, from a geotechnical point of view, these effects appear to be difficult to be reproduced reliably in a physically-based modelling approach. The growth of a tree and the expansion of its root architecture are directly connected with both intrinsic properties such as species and age, and extrinsic factors like topography, availability of nutrients, climate and soil type. These parameters control four main issues of the tree root architecture: 1) Type of rooting; 2) maximum growing distance to the tree stem (radius r); 3) maximum growing depth (height h); and 4) potential deformation of the root system. Geometric solids are able to approximate the distribution of a tree root system. The objective of this paper is to investigate whether it is possible to implement root systems and the connected hydrological and mechanical attributes sufficiently in a 3-dimensional slope stability model. Hereby, a spatio-dynamic vegetation module should cope with the demands of performance, computation time and significance. However, in this presentation, we focus only on the distribution of roots. The assumption is that the horizontal root distribution around a tree stem on a 2-dimensional plane can be described by a circle with the stem located at the centroid and a distinct radius r that is dependent on age and species. We classified three main types of tree root systems and reproduced the species-age-related root distribution with three respective mathematical solids in a synthetic 3-dimensional hillslope ambience. Thus, two solids in an Euclidian space were distinguished to represent the three root systems: i) cylinders with radius r and height h, whilst the dimension of latter defines the shape of a taproot-system or a shallow-root-system respectively; ii) elliptic paraboloids represent a cordate-root-system with radius r, height h and a constant, species-independent curvature. This procedure simplifies the classification of tree species into the three defined geometric solids. In this study we introduce a conceptual approach to estimate the 2- and 3-dimensional distribution of different tree root systems, and to implement it in a raster environment, as it is used in infinite slope models. Hereto we used the PCRaster extension in a python framework. The results show that root distribution and root growth are spatially reproducible in a simple raster framework. The outputs exhibit significant effects for a synthetically generated slope on local scale for equal time-steps. The preliminary results depict an initial step to develop a vegetation module that can be coupled with hydro-mechanical slope stability models. This approach is expected to yield a valuable contribution to the implementation of vegetation-related properties, in particular effects of root-reinforcement, into physically-based approaches using infinite slope models.

Thinning Mechanism of the South China Sea Crust: New Insight from the Deep Crustal Images

NASA Astrophysics Data System (ADS)

Chang, S. P.; Pubellier, M. F.; Delescluse, M.; Qiu, Y.; Liang, Y.; Chamot-Rooke, N. R. A.; Nie, X.; Wang, J.

2017-12-01

The passive margin in the South China Sea (SCS) has experienced a long-lived extension period from Paleocene to late Miocene, as well as an extreme stretching which implies an unusual fault system to accommodate the whole amount of extension. Previous interpretations of the fault system need to be revised to explain the amount of strain. We study a long multichannel seismic profile crossing the whole rifted margin in the southwest of SCS, using 6 km- and 8 km-long streamers. After de-multiple processing by SRME, Radon and F-K filtering, an enhanced image of the crustal geometry, especially on the deep crust, allows us to illustrate two levels of detachment at depth. The deeper detachment is around 7-8 sec TWT in the profile. The faults rooting at this detachment are characterized by large offset and are responsible for thicker synrift sediment. A few of these faults appear to reach the Moho. The geometry of the acoustic basement between these boundary faults suggests gentle tilting with a long wavelength ( 200km), and implies some internal deformation. The shallower detachment is located around 4-5 sec TWT. The faults rooting at this detachment represent smaller offset, a shorter wavelength of the basement and thinner packages of synrift sediment. Two detachments separate the crust into upper, middle and lower crust. If the lower crust shows ductile behavior, the upper and middle crust is mostly brittle and form large wavelength boudinage structure, and the internal deformation of the boudins might imply low friction detachments at shallower levels. The faults rooting to deep detachment have activated during the whole rifting period until the breakup. Within the upper and middle crust, the faults resulted in important tilting of the basement at shallow depth, and connect to the deep detachment at some places. The crustal geometry illustrates how the two detachments are important for the thinning process, and also constitute a pathway for the following magmatic activity from the mantle to the surface.

Seasonal Dynamics of Water Use Strategy of Two Salix Shrubs in Alpine Sandy Land, Tibetan Plateau.

PubMed

Zhu, Yajuan; Wang, Guojie; Li, Renqiang

2016-01-01

Water is a limiting factor for plant growth and vegetation dynamics in alpine sandy land of the Tibetan Plateau, especially with the increasing frequency of extreme precipitation events and drought caused by climate change. Therefore, a relatively stable water source from either deeper soil profiles or ground water is necessary for plant growth. Understanding the water use strategy of dominant species in the alpine sandy land ecosystem is important for vegetative rehabilitation and ecological restoration. The stable isotope methodology of δD, δ18O, and δ13C was used to determine main water source and long-term water use efficiency of Salix psammophila and S. cheilophila, two dominant shrubs on interdune of alpine sandy land in northeastern Tibetan Plateau. The root systems of two Salix shrubs were investigated to determine their distribution pattern. The results showed that S. psammophila and S. cheilophila absorbed soil water at different soil depths or ground water in different seasons, depending on water availability and water use strategy. Salix psammophila used ground water during the growing season and relied on shallow soil water recharged by rain in summer. Salix cheilophila used ground water in spring and summer, but relied on shallow soil water recharged by rain in spring and deep soil water recharged by ground water in fall. The two shrubs had dimorphic root systems, which is coincident with their water use strategy. Higher biomass of fine roots in S. psammophila and longer fine roots in S. cheilophila facilitated to absorb water in deeper soil layers. The long-term water use efficiency of two Salix shrubs increased during the dry season in spring. The long-term water use efficiency was higher in S. psammophila than in S. cheilophila, as the former species is better adapted to semiarid climate of alpine sandy land.

Seasonal Dynamics of Water Use Strategy of Two Salix Shrubs in Alpine Sandy Land, Tibetan Plateau

PubMed Central

Zhu, Yajuan; Wang, Guojie; Li, Renqiang

2016-01-01

Water is a limiting factor for plant growth and vegetation dynamics in alpine sandy land of the Tibetan Plateau, especially with the increasing frequency of extreme precipitation events and drought caused by climate change. Therefore, a relatively stable water source from either deeper soil profiles or ground water is necessary for plant growth. Understanding the water use strategy of dominant species in the alpine sandy land ecosystem is important for vegetative rehabilitation and ecological restoration. The stable isotope methodology of δD, δ18O, and δ13C was used to determine main water source and long-term water use efficiency of Salix psammophila and S. cheilophila, two dominant shrubs on interdune of alpine sandy land in northeastern Tibetan Plateau. The root systems of two Salix shrubs were investigated to determine their distribution pattern. The results showed that S. psammophila and S. cheilophila absorbed soil water at different soil depths or ground water in different seasons, depending on water availability and water use strategy. Salix psammophila used ground water during the growing season and relied on shallow soil water recharged by rain in summer. Salix cheilophila used ground water in spring and summer, but relied on shallow soil water recharged by rain in spring and deep soil water recharged by ground water in fall. The two shrubs had dimorphic root systems, which is coincident with their water use strategy. Higher biomass of fine roots in S. psammophila and longer fine roots in S. cheilophila facilitated to absorb water in deeper soil layers. The long-term water use efficiency of two Salix shrubs increased during the dry season in spring. The long-term water use efficiency was higher in S. psammophila than in S. cheilophila, as the former species is better adapted to semiarid climate of alpine sandy land. PMID:27243772

A multidisciplinary methodological approach for slope stability assessment of an area prone to shallow landslides

NASA Astrophysics Data System (ADS)

Bordoni, Massimiliano; Meisina, Claudia; Valentino, Roberto; Bittelli, Marco; Battista Bischetti, Gian; Vercesi, Alberto; Chersich, Silvia; Giuseppina Persichillo, Maria

2016-04-01

Rainfall-induced shallow landslides are widespread slope instabilities phenomena in several hilly and mountainous contexts all over the world. Due to their high density of diffusion also in small areas, they can provoke important damages to terrains, infrastructures, buildings, and, sometimes, loss of human lives. Shallow landslides affect superficial soils of limited thickness (generally lower than 2 m), located above weathered or not bedrock levels. Their triggering mechanism is strictly linked to the hydrological response of the soils to rainfall events. Thus, it becomes fundamental a comprehensive analysis of the soil properties which can influence the susceptibility of a slope to shallow landslides. In this study, a multidisciplinary approach was followed for the characterization of the soils and the individuation of the triggering conditions in an area particularly prone to shallow failures, for slope stability assessment. This area corresponded to the hilly sector of North-Eastern Oltrepò Pavese (Lombardy Region, Northern Italy), where the density of shallow landslides is really high, reaching more than 36 landslides per km2. The soils of the study area were analyzed through a multidisciplinary characterization, which took into account for the main geotechnical, mechanical and mineralogical parameters and also for the main pedological features of the materials. This approach allowed for identifying the main features and the horizons which could influence the soil behavior in relation to the conditions that are preparatory to shallow landslides development. In a test-site slope, representative of the main geomorphological, geological and landslides distribution characteristics typical of the study area, a continuous in time monitoring of meteorological (rainfall amount, air temperature, air humidity, atmospheric pressure, net solar radiation, wind speed and direction) and hydrological (soil water content, pore water pressure) parameters was implemented. In this way, the triggering mechanism of shallow failures in the study area was identified and the effects of the different hydrological parameters on slope stability assessment through a simplified physically-based model (Lu and Godt's model) was quantified. In several slopes, representative of the main land uses (cultivated vineyards, abandoned vineyards, shrub lands, woodlands) of the study area, soil root reinforcement of the vegetation of the slopes was measured since root density and root tensile strength. This parameter was, then, integrated in the same simplified physically-based model (Lu and Godt's model), in order to improve the assessment of slope instabilities. Moreover, this analysis allowed for a better identification of the land use classes more susceptible to shallow landslides, furnishing an important tool for land planning.

Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.)

PubMed Central

2013-01-01

Background Root system architecture is an important trait affecting the uptake of nutrients and water by crops. Shallower root systems preferentially take up nutrients from the topsoil and help avoid unfavorable environments in deeper soil layers. We have found a soil-surface rooting mutant from an M2 population that was regenerated from seed calli of a japonica rice cultivar, Nipponbare. In this study, we examined the genetic and physiological characteristics of this mutant. Results The primary roots of the mutant showed no gravitropic response from the seedling stage on, whereas the gravitropic response of the shoots was normal. Segregation analyses by using an F2 population derived from a cross between the soil-surface rooting mutant and wild-type Nipponbare indicated that the trait was controlled by a single recessive gene, designated as sor1. Fine mapping by using an F2 population derived from a cross between the mutant and an indica rice cultivar, Kasalath, revealed that sor1 was located within a 136-kb region between the simple sequence repeat markers RM16254 and 2935-6 on the terminal region of the short arm of chromosome 4, where 13 putative open reading frames (ORFs) were found. We sequenced these ORFs and detected a 33-bp deletion in one of them, Os04g0101800. Transgenic plants of the mutant transformed with the genomic fragment carrying the Os04g0101800 sequence from Nipponbare showed normal gravitropic responses and no soil-surface rooting. Conclusion These results suggest that sor1, a rice mutant causing soil-surface rooting and altered root gravitropic response, is allelic to Os04g0101800, and that a 33-bp deletion in the coding region of this gene causes the mutant phenotypes. PMID:24280269

Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.).

PubMed

Hanzawa, Eiko; Sasaki, Kazuhiro; Nagai, Shinsei; Obara, Mitsuhiro; Fukuta, Yoshimichi; Uga, Yusaku; Miyao, Akio; Hirochika, Hirohiko; Higashitani, Atsushi; Maekawa, Masahiko; Sato, Tadashi

2013-11-20

Root system architecture is an important trait affecting the uptake of nutrients and water by crops. Shallower root systems preferentially take up nutrients from the topsoil and help avoid unfavorable environments in deeper soil layers. We have found a soil-surface rooting mutant from an M2 population that was regenerated from seed calli of a japonica rice cultivar, Nipponbare. In this study, we examined the genetic and physiological characteristics of this mutant. The primary roots of the mutant showed no gravitropic response from the seedling stage on, whereas the gravitropic response of the shoots was normal. Segregation analyses by using an F2 population derived from a cross between the soil-surface rooting mutant and wild-type Nipponbare indicated that the trait was controlled by a single recessive gene, designated as sor1. Fine mapping by using an F2 population derived from a cross between the mutant and an indica rice cultivar, Kasalath, revealed that sor1 was located within a 136-kb region between the simple sequence repeat markers RM16254 and 2935-6 on the terminal region of the short arm of chromosome 4, where 13 putative open reading frames (ORFs) were found. We sequenced these ORFs and detected a 33-bp deletion in one of them, Os04g0101800. Transgenic plants of the mutant transformed with the genomic fragment carrying the Os04g0101800 sequence from Nipponbare showed normal gravitropic responses and no soil-surface rooting. These results suggest that sor1, a rice mutant causing soil-surface rooting and altered root gravitropic response, is allelic to Os04g0101800, and that a 33-bp deletion in the coding region of this gene causes the mutant phenotypes.

Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress.

PubMed

York, Larry M; Galindo-Castañeda, Tania; Schussler, Jeffrey R; Lynch, Jonathan P

2015-04-01

Increasing the nitrogen use efficiency of maize is an important goal for food security and agricultural sustainability. In the past 100 years, maize breeding has focused on yield and above-ground phenes. Over this period, maize cultivation has changed from low fertilizer inputs and low population densities to intensive fertilization and dense populations. The authors hypothesized that through indirect selection the maize root system has evolved phenotypes suited to more intense competition for nitrogen. Sixteen maize varieties representing commercially successful lines over the past century were planted at two nitrogen levels and three planting densities. Root systems of the most recent material were 7 º more shallow, had one less nodal root per whorl, had double the distance from nodal root emergence to lateral branching, and had 14% more metaxylem vessels, but total mextaxylem vessel area remained unchanged because individual metaxylem vessels had 12% less area. Plasticity was also observed in cortical phenes such as aerenchyma, which increased at greater population densities. Simulation modelling with SimRoot demonstrated that even these relatively small changes in root architecture and anatomy could increase maize shoot growth by 16% in a high density and high nitrogen environment. The authors concluded that evolution of maize root phenotypes over the past century is consistent with increasing nitrogen use efficiency. Introgression of more contrasting root phene states into the germplasm of elite maize and determination of the functional utility of these phene states in multiple agronomic conditions could contribute to future yield gains. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Vertical accretion and shallow subsidence in a mangrove forest of southwestern Florida, U.S.A

USGS Publications Warehouse

Cahoon, D.R.; Lynch, J.C.

1997-01-01

Simultaneous measurements of vertical accretion from artificial soil marker horizons and soil elevation change from sedimentation-erosion table (SET) plots were used to evaluate the processes related to soil building in range, basin, and overwash mangrove forests located in a low-energy lagoon which recieves minor inputs of terregenous sediments. Vertical accretion measures reflect the contribution of surficial sedimentation (sediment deposition and surface root growth). Measures of elevation change reflect not only the contributions of vertical accretion but also those of subsurface processes such as compaction, decomposition and shrink-swell. The two measures were used to calculate amounts of shallow subsidence (accretion minus elevation change) in each mangrove forest. The three forest types represent different accretionary envrionments. The basin forest was located behind a natural berm. Hydroperiod here was controlled primarily by rainfall rather than tidal exchange, although the basin flooded during extreme tidal events. Soil accretion here occurred primarily by autochthonous organic matter inputs, and elevation was controlled by accretion and shrink-swell of the substrate apparently related to cycles of flooding-drying and/or root growth-decomposition. This hydrologically-restricted forest did not experience an accretion or elevation deficit relative to sea-level rise. The tidally dominated fringe and overwash island forests accreted through mineral sediment inputs bound in place by plant roots. Filamentous turf algae played an important role in stabilizing loose muds in the fringe forest where erosion was prevalent. Elevation in these high-energy environments was controlled not only by accretion but also by erosion and/or shallow subsidence. The rate of shallow subsidence was consistently 3-4 mm y-1 in the fringe and overwash island forests but was negligible in the basin forest. Hence, the vertical development of mangrove soils was influenced by both surface and subsurface processes and the procces controlling soil elevation differed among forest types. The mangrove ecosystem at Rookery Bay has remained stable as sea level has risen during the past 70 years. Yet, lead-210 accretion data suggest a substantial accretion deficit has occurred in the past century (accretion was 10-20 cm < sea-level rise from 1930 to 1990) in the fringe and island forests at Rookery Bay. In contrast, our measures of elevation change mostly equalled the estimates of sea-level rise and shallow subsidence. These data suggest that (1) vertical accretion in this system is driven by local sea-level rise and shallow subsidence, and (2) the mangrove forests are mostly keeping pace with sea-level rise. Thus, the vulnerability of this mangrove ecosystem to sea-level rise is best described in terms of an elevation deficit (elevation change minus sea-level rise) based on annual measures rather than an accretion deficit (accretion minus sea-level rise) based on decadal measures.

Effects of co-inoculation with arbuscular mycorrhizal fungi and rhizobia on soybean growth as related to root architecture and availability of N and P.

PubMed

Wang, Xiurong; Pan, Qiang; Chen, Fengxian; Yan, Xiaolong; Liao, Hong

2011-04-01

Soybean plants can form tripartite symbiotic associations with rhizobia and arbuscular mycorrhizal (AM) fungi, but little is known about effects of co-inoculation with rhizobia and AM fungi on plant growth, or their relationships to root architecture as well as nitrogen (N) and phosphorus (P) availability. In the present study, two soybean genotypes contrasting in root architecture were grown in a field experiment to evaluate relationships among soybean root architecture, AMF colonization, and nodulation under natural conditions. Additionally, a soil pot experiment in greenhouse was conducted to investigate the effects of co-inoculation with rhizobia and AM fungi on soybean growth, and uptake of N and P. Our results indicated that there was a complementary relationship between root architecture and AMF colonization in the field. The deep root soybean genotype had greater AMF colonization at low P, but better nodulation with high P supply than the shallow root genotype. A synergistic relationship dependent on N and P status exists between rhizobia and AM fungi on soybean growth. Co-inoculation with rhizobia and AM fungi significantly increased soybean growth under low P and/or low N conditions as indicated by increased shoot dry weight, along with plant N and P content. There were no significant effects of inoculation under adequate N and P conditions. Furthermore, the effects of co-inoculation were related to root architecture. The deep root genotype, HN112, benefited more from co-inoculation than the shallow root genotype, HN89. Our results elucidate new insights into the relationship between rhizobia, AM fungi, and plant growth under limitation of multiple nutrients, and thereby provides a theoretical basis for application of co-inoculation in field-grown soybean.

Rhizosphere hydrophobicity: A positive trait in the competition for water.

PubMed

Zeppenfeld, Thorsten; Balkenhol, Niko; Kóvacs, Kristóf; Carminati, Andrea

2017-01-01

The ability to acquire water from the soil is a major driver in interspecific plant competition and it depends on several root functional traits. One of these traits is the excretion of gel-like compounds (mucilage) that modify physical soil properties. Mucilage secreted by roots becomes hydrophobic upon drying, impedes the rewetting of the soil close to the root, the so called rhizosphere, and reduces water availability to plants. The function of rhizosphere hydrophobicity is not easily understandable when looking at a single plant, but it may constitute a competitive advantage at the ecosystem level. We hypothesize that by making the top soil hydrophobic, deep-rooted plants avoid competititon with shallow-rooted plants. To test this hypothesis we used an individual-based model to simulate water uptake and growth of two virtual plant species, one deep-rooted plant capable of making the soil hydrophobic and a shallow-rooted plant. We ran scenarios with different precipitation regimes ranging from dry to wet (350, 700, and 1400 mm total annual precipitation) and from high to low precipitation frequencies (1, 7, and 14 days). Plant species abundance and biomass were chosen as indicators for competitiveness of plant species. At constant precipitation frequency mucilage hydrophobicity lead to a benefit in biomass and abundance of the tap-rooted population. Under wet conditions this effect diminished and tap-rooted plants were less productive. Without this trait both species coexisted. The effect of root exudation trait remained constant under different precipitation frequencies. This study shows that mucilage secretion is a competitive trait for the acquisition of water. This advantage is achieved by the modification of the soil hydraulic properties and specifically by inducing water repellency in soil regions which are shared with other species.

Rhizosphere hydrophobicity: A positive trait in the competition for water

PubMed Central

Balkenhol, Niko; Kóvacs, Kristóf; Carminati, Andrea

2017-01-01

The ability to acquire water from the soil is a major driver in interspecific plant competition and it depends on several root functional traits. One of these traits is the excretion of gel-like compounds (mucilage) that modify physical soil properties. Mucilage secreted by roots becomes hydrophobic upon drying, impedes the rewetting of the soil close to the root, the so called rhizosphere, and reduces water availability to plants. The function of rhizosphere hydrophobicity is not easily understandable when looking at a single plant, but it may constitute a competitive advantage at the ecosystem level. We hypothesize that by making the top soil hydrophobic, deep-rooted plants avoid competititon with shallow-rooted plants. To test this hypothesis we used an individual-based model to simulate water uptake and growth of two virtual plant species, one deep-rooted plant capable of making the soil hydrophobic and a shallow-rooted plant. We ran scenarios with different precipitation regimes ranging from dry to wet (350, 700, and 1400 mm total annual precipitation) and from high to low precipitation frequencies (1, 7, and 14 days). Plant species abundance and biomass were chosen as indicators for competitiveness of plant species. At constant precipitation frequency mucilage hydrophobicity lead to a benefit in biomass and abundance of the tap-rooted population. Under wet conditions this effect diminished and tap-rooted plants were less productive. Without this trait both species coexisted. The effect of root exudation trait remained constant under different precipitation frequencies. This study shows that mucilage secretion is a competitive trait for the acquisition of water. This advantage is achieved by the modification of the soil hydraulic properties and specifically by inducing water repellency in soil regions which are shared with other species. PMID:28753673

The role of nurse functional types in seedling recruitment dynamics of alternative states in rangelands

NASA Astrophysics Data System (ADS)

López, Dardo R.; Cavallero, Laura

2017-02-01

In arid ecosystems, recruitment dynamics are limited by harsh environmental conditions and greatly depend on the net outcome of the balance between facilitation and competition. This outcome can change as a consequence of degradation caused by livestock overgrazing. Also, distinct plant species may show a differential response to a common neighbour under the same environmental conditions. Therefore, ecosystem degradation could affect the net balance of plant-plant interactions, which can also depend on the functional traits of potential nurse species. The aim of this study is to assess the influence of alternative degradation states on (i) the density of seedlings of perennial species emerging in four microsite types, and on (ii) the relative interaction intensity (RII) between seedlings and potential nurses belonging to three functional types (deep- and shallow-rooted shrubs, and tussock grasses). During three years, we recorded seedling density of perennial species in four alternative degradation states in grass-shrubby steppes from northwestern Patagonia. The density of emerged seedlings of perennial species decreased sharply as degradation increased, showing non-linear responses in most microsites. Seedling density underneath deep-rooted shrubs was higher than underneath shallow-rooted shrubs and tussock grasses. Also, deep-rooted shrubs were the only functional type that recorded seedling emergence in highly degraded states. Deep-rooted shrubs had facilitative effects on the seedlings emerging and surviving underneath them, independently of ecosystem degradation. In contrast, RII between shallow-rooted shrubs and recently emerged seedlings, switched from positive effects in the less degraded states, to negative effects in the most degraded state. Tussock grasses recorded the weakest intensity of facilitative interactions with recently emerged seedlings, switching to competitive interactions as degradation increased. Our results suggest that species with key functional traits should be considered in management and restoration plans for rangelands with different degradation levels, since they have a strong influence in the net outcome of plant-plant interactions and in the recruitment dynamics of arid ecosystems.

The belowground frontier is key to understanding terrestrial ecosystem responses to global change

NASA Astrophysics Data System (ADS)

Mackay, D. S.; Grossiord, C.; Johnson, D. M.; McDowell, N. G.; Savoy, P.; Sperry, J.

2017-12-01

Terrestrial ecosystems adapt and acclimate to global change in part because plasticity of traits helps define how individuals respond to thresholds. A threshold could be a tipping point where a small change in a forcing brings about a big change in system response, or a critical transition that shifts the system into an alternative stable or steady state. For instance, a dimorphic root system offers an individual plant the ability to use shallow water during wet periods and deeper water during dry periods. During drought this system imparts on the ecosystem a stable state as opposed to shifting to an alternative state of fewer surviving woody species. We tested this systems view within TREES, a biophysical model that integrates abiotic and biotic drivers of ecosystem response by coupling whole-plant (rhizosphere to leaf) hydraulics to carbon allocation, root-rhizosphere expansion/contraction and rhizosphere-root centric microbe-plant nitrogen dynamics. We simulated ecosystem responses to (1) seasonal drought in a blue oak woodland, (2) an unusually protracted drought in a mixed species woodland, and (3) an experimentally imposed drought with and without warming in a juniper-pinon woodland. For the blue oak, access to deep groundwater was critical for the timing of drought deciduousness. For the mixed species woodland, deeper roots reduced the risk of mortality via rhizosphere hydraulic failure. Drought induced relatively greater water uptake from bedrock water sources in both juniper and pinon, while heat promoted greater bedrock water uptake by juniper. Higher temperature forced the microbial N and plant NSC cycles to new steady states that were unfavorable for allocation of carbon to canopy and fine roots, and higher respiration costs in roots resulted in a decline in root-to-leaf area and consequent greater loss of hydraulic conductance. The results justify a deeper understanding of the belowground frontier that bridges hydrology, plant hydraulics, and biogeochemical cycles.

Shallow Environmentalism: A Preliminary Eco-Critical Discourse Analysis of Secondary School English as a Foreign Language (EFL) Texts in China

ERIC Educational Resources Information Center

Xiong, Tao

2014-01-01

The school textbooks have been a useful site for inquiry into ways environmentalism is communicated. Rooted in the dominant social value of exploiting nature to satisfy human desire, shallow environmentalism treats environmental and ecological destruction by addressing immediate physical symptoms but refuses to reflect critically on the underlying…

Primal Eukaryogenesis: On the Communal Nature of Precellular States, Ancestral to Modern Life

PubMed Central

Egel, Richard

2012-01-01

This problem-oriented, exploratory and hypothesis-driven discourse toward the unknown combines several basic tenets: (i) a photo-active metal sulfide scenario of primal biogenesis in the porespace of shallow sedimentary flats, in contrast to hot deep-sea hydrothermal vent conditions; (ii) an inherently complex communal system at the common root of present life forms; (iii) a high degree of internal compartmentalization at this communal root, progressively resembling coenocytic (syncytial) super-cells; (iv) a direct connection from such communal super-cells to proto-eukaryotic macro-cell organization; and (v) multiple rounds of micro-cellular escape with streamlined reductive evolution-leading to the major prokaryotic cell lines, as well as to megaviruses and other viral lineages. Hopefully, such nontraditional concepts and approaches will contribute to coherent and plausible views about the origins and early life on Earth. In particular, the coevolutionary emergence from a communal system at the common root can most naturally explain the vast discrepancy in subcellular organization between modern eukaryotes on the one hand and both archaea and bacteria on the other. PMID:25382122

Shoot and Root Traits Contribute to Drought Resistance in Recombinant Inbred Lines of MD 23–24 × SEA 5 of Common Bean

PubMed Central

Polania, Jose; Rao, Idupulapati M.; Cajiao, Cesar; Grajales, Miguel; Rivera, Mariela; Velasquez, Federico; Raatz, Bodo; Beebe, Stephen E.

2017-01-01

Drought is the major abiotic stress factor limiting yield of common bean (Phaseolus vulgaris L.) in smallholder systems in Latin America and eastern and southern Africa; where it is a main source of protein in the daily diet. Identification of shoot and root traits associated with drought resistance contributes to improving the process of designing bean genotypes adapted to drought. Field and greenhouse studies were conducted at the International Center for Tropical Agriculture (CIAT), Palmira, Colombia to determine the relationship between grain yield and different shoot and root traits using a recombinant inbred lines (RILs) population (MD23–24 × SEA 5) of common bean. The main objectives of this study were to identify: (i) specific shoot and root morpho-physiological traits that contribute to improved resistance to drought and that could be useful as selection criteria in breeding beans for drought resistance; and (ii) superior genotypes with desirable shoot and root traits that could serve as parents in breeding programs that are aimed at improving drought resistance. A set of 121 bean genotypes (111 RILs, 2 parents, 8 checks) belonging to the Mesoamerican gene pool and one cowpea variety were evaluated under field conditions with two levels of water supply (irrigated and rainfed) over three seasons. To complement field studies, a greenhouse study was conducted using plastic cylinders with soil inserted into PVC pipes, to determine the relationship between grain yield obtained under field conditions with different root traits measured under greenhouse conditions. Resistance to drought stress was positively associated with a deeper and vigorous root system, better shoot growth, and superior mobilization of photosynthates to pod and seed production. The drought resistant lines differed in their root characteristics, some of them with a vigorous and deeper root system while others with a moderate to shallow root system. Among the shoot traits measured, pod harvest index, and seed number per area could serve as useful selection criteria for assessing sink strength and for genetic improvement of drought resistance in common bean. PMID:28316609

Shoot and Root Traits Contribute to Drought Resistance in Recombinant Inbred Lines of MD 23-24 × SEA 5 of Common Bean.

PubMed

Polania, Jose; Rao, Idupulapati M; Cajiao, Cesar; Grajales, Miguel; Rivera, Mariela; Velasquez, Federico; Raatz, Bodo; Beebe, Stephen E

2017-01-01

Drought is the major abiotic stress factor limiting yield of common bean ( Phaseolus vulgaris L.) in smallholder systems in Latin America and eastern and southern Africa; where it is a main source of protein in the daily diet. Identification of shoot and root traits associated with drought resistance contributes to improving the process of designing bean genotypes adapted to drought. Field and greenhouse studies were conducted at the International Center for Tropical Agriculture (CIAT), Palmira, Colombia to determine the relationship between grain yield and different shoot and root traits using a recombinant inbred lines (RILs) population (MD23-24 × SEA 5) of common bean. The main objectives of this study were to identify: (i) specific shoot and root morpho-physiological traits that contribute to improved resistance to drought and that could be useful as selection criteria in breeding beans for drought resistance; and (ii) superior genotypes with desirable shoot and root traits that could serve as parents in breeding programs that are aimed at improving drought resistance. A set of 121 bean genotypes (111 RILs, 2 parents, 8 checks) belonging to the Mesoamerican gene pool and one cowpea variety were evaluated under field conditions with two levels of water supply (irrigated and rainfed) over three seasons. To complement field studies, a greenhouse study was conducted using plastic cylinders with soil inserted into PVC pipes, to determine the relationship between grain yield obtained under field conditions with different root traits measured under greenhouse conditions. Resistance to drought stress was positively associated with a deeper and vigorous root system, better shoot growth, and superior mobilization of photosynthates to pod and seed production. The drought resistant lines differed in their root characteristics, some of them with a vigorous and deeper root system while others with a moderate to shallow root system. Among the shoot traits measured, pod harvest index, and seed number per area could serve as useful selection criteria for assessing sink strength and for genetic improvement of drought resistance in common bean.

Coarse muscovite veins and alteration deep in the Yerington batholith, Nevada: insights into fluid exsolution in the roots of porphyry copper systems

NASA Astrophysics Data System (ADS)

Runyon, Simone E.; Steele-MacInnis, Matthew; Seedorff, Eric; Lecumberri-Sanchez, Pilar; Mazdab, Frank K.

2017-04-01

Veins and pervasive wall-rock alteration composed of coarse muscovite±quartz±pyrite are documented for the first time in a porphyritic granite at Luhr Hill in the Yerington District, Nevada. Coarse muscovite at Luhr Hill occurs at paleodepths of 6-7 km in the roots of a porphyry copper system and crops out on the scale of tens to hundreds of meters, surrounded by rock that is unaltered or variably altered to sodic-calcic assemblages. Coarse muscovite veins exhibit a consistent orientation, subvertical and N-S striking, which structurally restores to subhorizontal at the time of formation. Along strike, coarse muscovite veins swell from distal, millimeter-thick muscovite-only veinlets to proximal, centimeter-thick quartz-sulfide-bearing muscovite veins. Crosscutting relationships between coarse muscovite veins, pegmatite dikes, and sodic-calcic veins indicate that muscovite veins are late-stage magmatic-hydrothermal features predating final solidification of the Luhr Hill porphyritic granite. Fluid inclusions in the muscovite-quartz veins are high-density aqueous inclusions of 3-9 wt% NaCl eq. and <1 mol% CO2 that homogenize between 150 and 200 °C, similar to fluid inclusions from greisen veins in Sn-W-Mo vein systems. Our results indicate that muscovite-forming fluids at Luhr Hill were mildly acidic, of low to moderate salinity and sulfur content and low CO2 content, and that muscovite in deep veins and alteration differs in texture, composition, and process of formation from sericite at shallower levels of the hydrothermal system. Although the definition of greisen is controversial, we suggest that coarse muscovite alteration is more similar to alteration in greisen-type Sn-W-Mo districts worldwide than to sericitic alteration at higher levels of porphyry copper systems. The fluids that form coarse muscovite veins and alteration in the roots of porphyry copper systems are distinct from fluids that formed copper ore or widespread, shallower, acidic alteration. We propose that this style of veins and alteration at Luhr Hill represents degassing of moderate volumes of overpressured hydrothermal fluid during late crystallization of deep levels of the Yerington batholith.

Below-ground attributes on reclaimed surface minelands over a 40-year chronosequence

NASA Astrophysics Data System (ADS)

Limb, Ryan; Bohrer, Stefanie; Volk, Jay

2017-04-01

Reclamation following mining activities often aims to restore stable soils that support productive and diverse native plant communities. The soil re-spread process increases soil compaction, which may alter soil water, plant composition, rooting depths and soil organic matter. This may have a direct impact on vegetation establishment and species recruitment. Seasonal wet/dry and freeze/thaw patterns are thought to alleviate soil compaction over time. However, this has not been formally evaluated on reclaimed landscapes at large scales. Our objectives were to (1) determine soil compaction alleviation, (2) rooting depth and (3) spatial patterns of soil water content over a time-since-reclamation gradient. Soil resistance to penetration varied by depth, with shallow compaction remaining unchanged, but deeper compaction increased over time rather than being alleviated. Root biomass and depth did not increase with time and was consistently less than reference locations. Plant communities initially had a strong native component, but quickly became dominated by invasive species following reclamation and soil water content became increasingly homogeneous over the 40-year chronosequence. Seasonal weather patterns and soil organic matter additions can reduce soil compaction if water infiltration is not limited. Shallow and strongly fibrous-rooted grasses present in reclaimed sites added organic matter to shallow soil layers, but did not penetrate the compacted layers and allow water infiltration. Strong linkages between land management strategies, soil properties and vegetation composition can advance reclamation efforts and promote heterogeneous landscapes. However, current post-reclamation management strategies are not facilitating natural seasonal weather patterns to reducing soil compaction.

Native root xylem embolism and stomatal closure in stands of Douglas-fir and ponderosa pine: mitigation by hydraulic redistribution.

PubMed

Domec, J-C; Warren, J M; Meinzer, F C; Brooks, J R; Coulombe, R

2004-09-01

Hydraulic redistribution (HR), the passive movement of water via roots from moist to drier portions of the soil, occurs in many ecosystems, influencing both plant and ecosystem-water use. We examined the effects of HR on root hydraulic functioning during drought in young and old-growth Douglas-fir [ Pseudotsuga menziesii (Mirb.) Franco] and ponderosa pine ( Pinus ponderosa Dougl. Ex Laws) trees growing in four sites. During the 2002 growing season, in situ xylem embolism, water deficit and xylem vulnerability to embolism were measured on medium roots (2-4-mm diameter) collected at 20-30 cm depth. Soil water content and water potentials were monitored concurrently to determine the extent of HR. Additionally, the water potential and stomatal conductance ( g(s)) of upper canopy leaves were measured throughout the growing season. In the site with young Douglas-fir trees, root embolism increased from 20 to 55 percent loss of conductivity (PLC) as the dry season progressed. In young ponderosa pine, root embolism increased from 45 to 75 PLC. In contrast, roots of old-growth Douglas-fir and ponderosa pine trees never experienced more than 30 and 40 PLC, respectively. HR kept soil water potential at 20-30 cm depth above -0.5 MPa in the old-growth Douglas-fir site and -1.8 MPa in the old-growth ponderosa pine site, which significantly reduced loss of shallow root function. In the young ponderosa pine stand, where little HR occurred, the water potential in the upper soil layers fell to about -2.8 MPa, which severely impaired root functioning and limited recovery when the fall rains returned. In both species, daily maximum g(s) decreased linearly with increasing root PLC, suggesting that root xylem embolism acted in concert with stomata to limit water loss, thereby maintaining minimum leaf water potential above critical values. HR appears to be an important mechanism for maintaining shallow root function during drought and preventing total stomatal closure.

Presence of Trifolium repens Promotes Complementarity of Water Use and N Facilitation in Diverse Grass Mixtures.

PubMed

Hernandez, Pauline; Picon-Cochard, Catherine

2016-01-01

Legume species promote productivity and increase the digestibility of herbage in grasslands. Considerable experimental data also indicate that communities with legumes produce more above-ground biomass than is expected from monocultures. While it has been attributed to N facilitation, evidence to identify the mechanisms involved is still lacking and the role of complementarity in soil water acquisition by vertical root differentiation remains unclear. We used a 20-months mesocosm experiment to investigate the effects of species richness (single species, two- and five-species mixtures) and functional diversity (presence of the legume Trifolium repens) on a set of traits related to light, N and water use and measured at community level. We found a positive effect of Trifolium presence and abundance on biomass production and complementarity effects in the two-species mixtures from the second year. In addition the community traits related to water and N acquisition and use (leaf area, N, water-use efficiency, and deep root growth) were higher in the presence of Trifolium. With a multiple regression approach, we showed that the traits related to water acquisition and use were with N the main determinants of biomass production and complementarity effects in diverse mixtures. At shallow soil layers, lower root mass of Trifolium and higher soil moisture should increase soil water availability for the associated grass species. Conversely at deep soil layer, higher root growth and lower soil moisture mirror soil resource use increase of mixtures. Altogether, these results highlight N facilitation but almost soil vertical differentiation and thus complementarity for water acquisition and use in mixtures with Trifolium. Contrary to grass-Trifolium mixtures, no significant over-yielding was measured for grass mixtures even those having complementary traits (short and shallow vs. tall and deep). Thus, vertical complementarity for soil resources uptake in mixtures was not only dependant on the inherent root system architecture but also on root plasticity. We also observed a time-dependence for positive complementarity effects due to the slow development of Trifolium in mixtures, possibly induced by competition with grasses. Overall, our data underlined that soil water resource was an important driver of over-yielding and complementarity effects in Trifolium-grass mixtures.

Dynamics of calcium concentration in stemwood of red spruce and Siberian fir

Treesearch

Kevin T. Smith; Walter C. Shortle; Rakesh Minocha; Vladislav A. Alexeyev

1996-01-01

The atmospheric deposition of strong acid anions such as sulfate and nitrate shifts the ion exchange equilibrium in the rooting zone of sensitive forests. Red spruce and other northern coniferous forests are especially sensitive to deposition due to the shallow rooting of trees in a mor-type forest floor. Initially, the deposition of strong acid ions mobilizes...

Osmotic and elastic adjustments in cold desert shrubs differing in rooting depth: coping with drought and subzero temperatures

Treesearch

Fabian G. Scholz; Sandra J. Bucci; Nadia Arias; Frederick C. Meinzer; Guillermo Goldstein

2012-01-01

Physiological adjustments to enhance tolerance or avoidance of summer drought and winter freezing were studied in shallow- to deep-rooted Patagonian cold desert shrubs. We measured leaf water potential, osmotic potential, tissue elasticity, stem hydraulic characteristics, and stomatal conductance across species throughout the year, and assessed tissue damage by subzero...

Layered Plant-Growth Media for Optimizing Gaseous, Liquid and Nutrient Requirements: Modeling, Design and Monitoring

NASA Astrophysics Data System (ADS)

Heinse, R.; Jones, S. B.; Bingham, G.; Bugbee, B.

2006-12-01

Rigorous management of restricted root zones utilizing coarse-textured porous media greatly benefits from optimizing the gas-water balance within plant-growth media. Geophysical techniques can help to quantify root- zone parameters like water content, air-filled porosity, temperature and nutrient concentration to better address the root systems performance. The efficiency of plant growth amid high root densities and limited volumes is critically linked to maintaining a favorable water content/air-filled porosity balance while considering adequate fluxes to replenish water at decreasing hydraulic conductivities during uptake. Volumes adjacent to roots also need to be optimized to provide adequate nutrients throughout the plant's life cycle while avoiding excessive salt concentrations. Our objectives were to (1) design and model an optimized root zone system using optimized porous media layers, (2) verify our design by monitoring the water content distribution and tracking nutrient release and transport, and (3) mimic water and nutrient uptake using plants or wicks to draw water from the root system. We developed a unique root-zone system using layered Ottawa sands promoting vertically uniform water contents and air-filled porosities. Watering was achieved by maintaining a shallow saturated layer at the bottom of the column and allowing capillarity to draw water upward, where coarser particle sizes formed the bottom layers with finer particles sizes forming the layers above. The depth of each layer was designed to optimize water content based on measurements and modeling of the wetting water retention curves. Layer boundaries were chosen to retain saturation between 50 and 85 percent. The saturation distribution was verified by dual-probe heat-pulse water-content sensors. The nutrient experiment involved embedding slow release fertilizer in the porous media in order to detect variations in electrical resistivity versus time during the release, diffusion and uptake of nutrients. The experiment required a specific geometry for the acquisition of ERT data using the heat-pulse water-content sensor's steel needles as electrodes. ERT data were analyzed using the sensed water contents and deriving pore-water resistivities using Archie's law. This design should provide a more optimal root-zone environment by maintaining a more uniform water content and on-demand supply of water than designs with one particle size at all column heights. The monitoring capability offers an effective means to describe the relationship between root-system performance and plant growth.

Sensitivity analysis of a new dual-porosity hydroloigcal model coupled with the SOSlope model for the numerical simulations of rainfall triggered shallow landslides.

NASA Astrophysics Data System (ADS)

Schwarz, Massimiliano; Cohen, Denis

2017-04-01

Morphology and extent of hydrological pathways, in combination with the spatio-temporal variability of rainfall events and the heterogeneities of hydro-mechanical properties of soils, has a major impact on the hydrological conditions that locally determine the triggering of shallow landslides. The coupling of these processes at different spatial scales is an enormous challenge for slope stability modeling at the catchment scale. In this work we present a sensitivity analysis of a new dual-porosity hydrological model implemented in the hydro-mechanical model SOSlope for the modeling of shallow landslides on vegetated hillslopes. The proposed model links the calculation of the saturation dynamic of preferential flow-paths based on hydrological and topographical characteristics of the landscape to the hydro-mechanical behavior of the soil along a potential failure surface due to the changes of soil matrix saturation. Furthermore, the hydro-mechanical changes of soil conditions are linked to the local stress-strain properties of the (rooted-)soil that ultimately determine the force redistribution and related deformations at the hillslope scale. The model considers forces to be redistributed through three types of solicitations: tension, compression, and shearing. The present analysis shows how the conditions of deformation due to the passive earth pressure mobilized at the toe of the landslide are particularly important in defining the timing and extension of shallow landslides. The model also shows that, in densely rooted hillslopes, lateral force redistribution under tension through the root-network may substantially contribute to stabilizing slopes, avoiding crack formation and large deformations. The results of the sensitivity analysis are discussed in the context of protection forest management and bioengineering techniques.

Root distribution of Nitraria sibirica with seasonally varying water sources in a desert habitat.

PubMed

Zhou, Hai; Zhao, Wenzhi; Zheng, Xinjun; Li, Shoujuan

2015-07-01

In water-limited environments, the water sources used by desert shrubs are critical to understanding hydrological processes. Here we studied the oxygen stable isotope ratios (δ (18)O) of stem water of Nitraria sibirica as well as those of precipitation, groundwater and soil water from different layers to identify the possible water sources for the shrub. The results showed that the shrub used a mixture of soil water, recent precipitation and groundwater, with shallow lateral roots and deeply penetrating tap (sinker) roots, in different seasons. During the wet period (in spring), a large proportion of stem water in N. sibirica was from snow melt and recent precipitation, but use of these sources declined sharply with the decreasing summer rain at the site. At the height of summer, N. sibirica mainly utilized deep soil water from its tap roots, not only supporting the growth of shoots but also keeping the shallow lateral roots well-hydrated. This flexibility allowed the plants to maintain normal metabolic processes during prolonged periods when little precipitation occurs and upper soil layers become extremely dry. With the increase in precipitation that occurs as winter approaches, the percentage of water in the stem base of a plant derived from the tap roots (deep soil water or ground water) decreased again. These results suggested that the shrub's root distribution and morphology were the most important determinants of its ability to utilize different water sources, and that its adjustment to water availability was significant for acclimation to the desert habitat.

[Effects and mechanisms of plant roots on slope reinforcement and soil erosion resistance: a research review].

PubMed

Xiong, Yan-Mei; Xia, Han-Ping; Li, Zhi-An; Cai, Xi-An

2007-04-01

Plant roots play an important role in resisting the shallow landslip and topsoil erosion of slopes by raising soil shear strength. Among the models in interpreting the mechanisms of slope reinforcement by plant roots, Wu-Waldron model is a widely accepted one. In this model, the reinforced soil strength by plant roots is positively proportional to average root tensile strength and root area ratio, the two most important factors in evaluating slope reinforcement effect of plant roots. It was found that soil erosion resistance increased with the number of plant roots, though no consistent quantitative functional relationship was observed between them. The increase of soil erosion resistance by plant roots was mainly through the actions of fiber roots less than 1 mm in diameter, while fiber roots enhanced the soil stability to resist water dispersion via increasing the number and diameter of soil water-stable aggregates. Fine roots could also improve soil permeability effectively to decrease runoff and weaken soil erosion.

Global patterns of groundwater table depth.

PubMed

Fan, Y; Li, H; Miguez-Macho, G

2013-02-22

Shallow groundwater affects terrestrial ecosystems by sustaining river base-flow and root-zone soil water in the absence of rain, but little is known about the global patterns of water table depth and where it provides vital support for land ecosystems. We present global observations of water table depth compiled from government archives and literature, and fill in data gaps and infer patterns and processes using a groundwater model forced by modern climate, terrain, and sea level. Patterns in water table depth explain patterns in wetlands at the global scale and vegetation gradients at regional and local scales. Overall, shallow groundwater influences 22 to 32% of global land area, including ~15% as groundwater-fed surface water features and 7 to 17% with the water table or its capillary fringe within plant rooting depths.

Drought versus heat: What's the major constraint on Mediterranean green roof plants?

PubMed

Savi, Tadeja; Dal Borgo, Anna; Love, Veronica L; Andri, Sergio; Tretiach, Mauro; Nardini, Andrea

2016-10-01

Green roofs are gaining momentum in the arid and semi-arid regions due to their multiple benefits as compared with conventional roofs. One of the most critical steps in green roof installation is the selection of drought and heat tolerant species that can thrive under extreme microclimate conditions. We monitored the water status, growth and survival of 11 drought-adapted shrub species grown on shallow green roof modules (10 and 13cm deep substrate) and analyzed traits enabling plants to cope with drought (symplastic and apoplastic resistance) and heat stress (root membrane stability). The physiological traits conferring efficiency/safety to the water transport system under severe drought influenced plant water status and represent good predictors of both plant water use and growth rates over green roofs. Moreover, our data suggest that high substrate temperature represents a stress factor affecting plant survival to a larger extent than drought per se. In fact, the major cause influencing seedling survival on shallow substrates was the species-specific root resistance to heat, a single and easy measurable trait that should be integrated into the methodological framework for screening and selection of suitable shrub species for roof greening in the Mediterranean. Copyright © 2016 Elsevier B.V. All rights reserved.

Leaf nitrogen and phosphorus of temperate desert plants in response to climate and soil nutrient availability

PubMed Central

He, Mingzhu; Dijkstra, Feike A.; Zhang, Ke; Li, Xinrong; Tan, Huijuan; Gao, Yanhong; Li, Gang

2014-01-01

In desert ecosystems, plant growth and nutrient uptake are restricted by availability of soil nitrogen (N) and phosphorus (P). The effects of both climate and soil nutrient conditions on N and P concentrations among desert plant life forms (annual, perennial and shrub) remain unclear. We assessed leaf N and P levels of 54 desert plants and measured the corresponding soil N and P in shallow (0–10 cm), middle (10–40 cm) and deep soil layers (40–100 cm), at 52 sites in a temperate desert of northwest China. Leaf P and N:P ratios varied markedly among life forms. Leaf P was higher in annuals and perennials than in shrubs. Leaf N and P showed a negative relationship with mean annual temperature (MAT) and no relationship with mean annual precipitation (MAP), but a positive relationship with soil P. Leaf P of shrubs was positively related to soil P in the deep soil. Our study indicated that leaf N and P across the three life forms were influenced by soil P. Deep-rooted plants may enhance the availability of P in the surface soil facilitating growth of shallow-rooted life forms in this N and P limited system, but further research is warranted on this aspect. PMID:25373739

Leaf nitrogen and phosphorus of temperate desert plants in response to climate and soil nutrient availability

NASA Astrophysics Data System (ADS)

He, Mingzhu; Dijkstra, Feike A.; Zhang, Ke; Li, Xinrong; Tan, Huijuan; Gao, Yanhong; Li, Gang

2014-11-01

In desert ecosystems, plant growth and nutrient uptake are restricted by availability of soil nitrogen (N) and phosphorus (P). The effects of both climate and soil nutrient conditions on N and P concentrations among desert plant life forms (annual, perennial and shrub) remain unclear. We assessed leaf N and P levels of 54 desert plants and measured the corresponding soil N and P in shallow (0-10 cm), middle (10-40 cm) and deep soil layers (40-100 cm), at 52 sites in a temperate desert of northwest China. Leaf P and N:P ratios varied markedly among life forms. Leaf P was higher in annuals and perennials than in shrubs. Leaf N and P showed a negative relationship with mean annual temperature (MAT) and no relationship with mean annual precipitation (MAP), but a positive relationship with soil P. Leaf P of shrubs was positively related to soil P in the deep soil. Our study indicated that leaf N and P across the three life forms were influenced by soil P. Deep-rooted plants may enhance the availability of P in the surface soil facilitating growth of shallow-rooted life forms in this N and P limited system, but further research is warranted on this aspect.

Ecology of eelgrass meadows of the Atlantic Coast: a community profile

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thayer, G.W.; Kenworthy, W.J.; Fonseca, M.S.

1984-07-01

Eelgrass, Zostera marina, dominates the ecologically important but fragile seagrass communities along the east coast of the United States from North Carolina to Nova Scotia. Grasslike leaves and an extensive root and rhizome system enable eelgrass to exist in a shallow aquatic environment subject to waves, tides, and shifting sediments. Eelgrass meadows are highly productive, frequently rivaling agricultural croplands. They provide shelter and a rich variety of primary and secondary food resources, and form a nursery habitat for the life history stages of numerous fishery organisms. The leaves absorb and release nutrients, provide surfaces for attachment, reduce water current velocity,more » turbulence and scour, and promote accumulation of detritus. Rhizomes provide protection for benthic infauna and enhance sediment stability. Roots absorb and release nutrients to interstitial waters. Because of their shallow, subtidal existence, seagrasses are susceptible to perturbations of both the water column and sediments. Eelgrass meadows are impacted by dredging and filling, some commercial fishery harvest techniques, modification of normal temperature and salinity regimes, and addition of chemical wastes. Techniques have been developed to successfully restore eelgrass habitats, but a holistic approach to planning research and environmentally-related decisions is needed to avoid cumulative environmental impacts on these vital nursery areas. 64 figures, 16 tables.« less

WETLAND RESTORATION AND REMEDIATION IN SOUTHWEST LOUISIANA MARSHES: A STUDY OF SOIL ELEVATION, VERTICAL ACCRETION, SHALLOW SUBSIDENCE AND ROOT ZONE INFLUENCES IN MARSHES RESTORED USING A VARIETY OF TECHNIQUES

EPA Science Inventory

For Project 1, we will continue sampling of all restoration sites on a quarterly basis. We also will present findings at the 2003 Society of Wetland Scientists Meeting. We will prepare a final data set for a peer-reviewed journal publication. Below-ground root zone...

Role of aquaporin activity in regulating deep and shallow root hydraulic conductance during extreme drought

Treesearch

Daniel M. Johnson; Mark E. Sherrard; Jean-Christophe Domec; Robert B. Jackson

2014-01-01

Key message Deep root hydraulic conductance is upregulated during severe drought and is associated with upregulation in aquaporin activity. Abstract In 2011, Texas experienced the worst single-year drought in its recorded history and, based on tree-ring data, likely itsworst in the pastmillennium. In the Edwards Plateau of Texas, rainfall was 58 % lower and the mean...

Vegetation induced diel signal and its meaning in recharge and discharge regions

NASA Astrophysics Data System (ADS)

Gribovszki, Zoltán; Tóth, Tibor; Csáfordi, Péter; Szabó, András; Móricz, Norbert; Kalicz, Péter

2017-04-01

Afforestation, promoted by the European Union is planned in Hungary in the next decades. One of the most important region for afforestation is the Hungarian Great Plain where the precipitation is far below potential ET so forests can not survive without significant water uptake from shallow groundwater. Diel fluctuations of hydrological variables (e.g., soil moisture, shallow groundwater level, streamflow rate) are rarely investigated in the hydrologic literature although these short-term fluctuations may incorporate useful information (like groundwater uptake) about hydro-ecological systems in shallow groundwater areas. Vegetation induced diel fluctuations are rarely compared under varying hydrologic conditions (such as recharge and discharge zones). In this study, the data of soil moisture and shallow groundwater monitoring under different surface covers (forest and neighboring agricultural plots) in discharge and recharge regions were analyzed to gain a better understanding of the vegetation hydrological impact or water uptake in changing climate. The pilot areas of the study are located in Hungarian Great Plain and in Western Hungary. The water table under the forest displayed a typical night-time recovery in the discharge region, indicating a significant groundwater supply. Certainly, the root system of the forest was able to tap the groundwater in depths measuring a few metres, while the shallower roots of the herbaceous vegetation generally did not reach the groundwater reservoir at these depths. In the recharge zone the water table under the forest showed step-like diel pattern that refer to a lack of additional groundwater supply from below. The low groundwater evapotranspiration of the forest in the recharge zone was due to the lack of the groundwater supply in the recharge area. Similar patterns can be detected in the soil moisture of recharge and discharge zones as well. Our results suggest that local estimations of groundwater evapotranspiration from water table or soil moisture measurements can only be achieved by understanding the different hydrological characteristics of recharge and discharge zones. In the context of climate change higher temperature and longer dry periods induced higher evapotranspiration constrain will probably reduce the groundwater level and so the spatial extent of shallow groundwater areas (reachable groundwater resources for vegetation). Therefore the better understanding of hydrological impact of different surface covers in shallow groundwater areas in changing climate is crucial, not only from water resources management point of view, but also from the viewpoint of agricultural and forest production or survival of forests with high water demand. This research has been mainly supported by the Agroclimate.2 VKSZ_12-1-2013-0034 project. The research of Zoltán Gribovszki was supported by the European Union and the State of Hungary, co-financed by the European Social Fund in the framework of TÁMOP 4.2.4. A/2-11-1-2012-0001 'National Excellence Program'.

How do soil physical conditions for crop growth vary over time under established contrasting tillage regimes?

NASA Astrophysics Data System (ADS)

Hallett, Paul; Stobart, Ron; Valentine, Tracy; George, Timothy; Morris, Nathan; Newton, Adrian; McKenzie, Blair

2014-05-01

When plant breeders develop modern cereal varieties for the sustainable intensification of agriculture, insufficient thought is given to the impact of tillage on soil physical conditions for crop production. In earlier work, we demonstrated that barley varieties that perform best in ploughed soil (the approach traditionally used for breeding trials) were not the same as those performing best under shallow non-inversion or zero-tillage. We also found that the Quantitative Trait Loci (QTL) associated with improved phosphorus uptake, and hence useful for marker assisted breeding, were not robust between different tillage regimes. The impact of the soil environment had greater impact than the genetics in GxE interactions. It is obvious that soil tillage should be considered when breeding the next generation of crops. Tillage may also have important impacts on carbon storage, but we found that despite greater soil carbon at shallow depths under non-inversion tillage, the carbon stored throughout the soil profile was not affected by tillage. Studies on soil tillage impacts to crop productivity and soil quality are often performed in one season, on single sites that have had insufficient time to develop. Our current research explores multiple sites, on different soils, with temporal measurements of soil physical conditions under contrasting tillage regimes. We use the oldest established contemporary tillage experiments in the United Kingdom, with all sites sharing ploughed and shallow (7cm) non-inversion tillage treatments. In eastern Scotland (Mid Pilmore), the site also has zero tillage and deep ploughing (40 cm) treatments, and was established 11 years ago. In east England there are two sites, both also having a deep non-inversion tillage treatment, and they were established 6 (New Farm Systems) and 8 (STAR) years ago. We measure a range of crop and soil properties at sowing, one month after sowing and post-harvest, including rapid lab based assays that allow high-throughput. Samples are taken over the rooting zone in the topsoil, plough pan and subsoil. The first year's dataset from this comprehensive project will be presented. Early data identified plough pans under shallow non-inversion tillage that will limit root growth at all sites. Aggregate stabilities vary as expected, with plough soils at shallow depth being less stable than non-inversion tillage, but greater stability in plough soils at greater depth due to incorporated organic matter. Very rapidly following cultivation, the seedbeds coalesce, resulting in a more challenging physical environment for crop growth. We are exploring the mechanisms in soil structure temporal dynamics in greater detail, including the resilience of seedbeds to structural degradation through natural weathering and the action of plants. These profound differences in soil conditions will impact the root ideotype of crops for these different conditions. This has implications for the way in which breeding and genotype selection is performed in the future. Ultimately, we aim to identify crop varieties suited to local soil conditions and management, possibly with root traits that boost yields and soil physical quality.

Hydrologic Controls on Shallow Landslide Location, Size, and Shape

NASA Astrophysics Data System (ADS)

Bellugi, D.; Milledge, D.; Perron, T.; McKean, J. A.; Dietrich, W.; Rulli, M.

2012-12-01

Shallow landslides, typically involving just the soil mantle, are principally controlled by topography, soil and root strengths, and soil thickness, and are typically triggered by storm-induced increases in pore water pressure. The response of a landscape to landslide-triggering storms will thus depend on factors such as rainfall totals, storm intensity and duration, and antecedent moisture conditions. The two dominant mechanisms that generate high pore water pressures at a point are topographically-steered lateral subsurface flow (over timescales of days to weeks), and rapid vertical infiltration (over timescales of minutes to hours). We aim to understand the impact of different storm characteristics and hydrologic regimes on shallow landslide location, size, and shape. We have developed a regional-scale model, which applies a low-parameter grid-based multi-dimensional slope stability model within a novel search algorithm, to generate discrete landslide predictions. This model shows that the spatial organization of parameters such as root strength and pore water pressure has a strong control on shallow landslide location, size, and shape. We apply this model to a field site near Coos Bay, OR, where a ten-year landslide inventory has been mapped onto high-resolution topographic data. Our model predicts landslide size generally increases with increasing rainfall intensity, except when root strength is extremely high and pore pressures are topographically steered. The distribution of topographic index values (the ratios of contributing area to slope) of predicted landslides is a clear signature of the pore water pressure generation mechanism: as laterally dominated flow increases, landslides develop in locations with lower slopes and higher contributing areas; in contrast, in the case of vertically-dominated pore pressure rise, landslides are consistently found in locations with higher slopes and lower contributing areas. While in both cases landslides are found in the hollows, where the soils are sufficiently deep to overcome the effects of root strength, in the laterally-dominated case they are predicted to occur further down the hollows (which matches field observations). The size distribution of landslides is better predicted in our model when vertical infiltration dominates, but the observed distribution of topographic index values follows that predicted when lateral flow dominates. This suggests that both mechanisms must be taken into account in order to capture both location and size of shallow landslides (consistent with field observations). These results suggest that this modeling approach could allow us to use observed landslide locations and geometries to infer the dominant hydrologic triggering mechanisms. Furthermore, as the spatial and temporal resolution of precipitation forecasting improves, this model will enable us to more accurately predict both location and size of shallow landslides.

Modelling root reinforcement in shallow forest soils

USGS Publications Warehouse

Skaugset, Arne E.

1997-01-01

A hypothesis used to explain the relationship between timber harvesting and landslides is that tree roots add mechanical support to soil, thus increasing soil strength. Upon harvest, the tree roots decay which reduces soil strength and increases the risk of management -induced landslides. The technical literature does not adequately support this hypothesis. Soil strength values attributed to root reinforcement that are in the technical literature are such that forested sites can't fail and all high risk, harvested sites must fail. Both unstable forested sites and stable harvested sites exist, in abundance, in the real world thus, the literature does not adequately describe the real world. An analytical model was developed to calculate soil strength increase due to root reinforcement. Conceptually, the model is composed of a reinforcing element with high tensile strength, i.e. a conifer root, embedded in a material with little tensile strength, i.e. a soil. As the soil fails and deforms, the reinforcing element also deforms and stretches. The lateral deformation of the reinforcing element is treated analytically as a laterally loaded pile in a flexible foundation and the axial deformation is treated as an axially loaded pile. The governing differential equations are solved using finite-difference approximation techniques. The root reinforcement model was tested by comparing the final shape of steel and aluminum rods, parachute cord, wooden dowels, and pine roots in direct shear with predicted shapes from the output of the root reinforcement model. The comparisons were generally satisfactory, were best for parachute cord and wooden dowels, and were poorest for steel and aluminum rods. A parameter study was performed on the root reinforcement model which showed reinforced soil strength increased with increasing root diameter and soil depth. Output from the root reinforcement model showed a strain incompatibility between large and small diameter roots. The peak increase in soil strength attributed to roots was controlled by the small (<4mm) diameter root fraction. These results were used to calculate the effect of timber harvesting on a small, approximately 7.6 m3 (10 yd3), hypothetical landslide in a shallow, cohesionless, forest soil. The root reinforcement model predicted a post-harvest reduction in soil strength of 14 and 19 percent for a soil with and without 5 kPa (105 lbs/ft2) of cohesion, respectively.

The groundwater subsidy to vegetation: groundwater exchanges between landcover patches

NASA Astrophysics Data System (ADS)

Steven, L. I.; Gimenez, R.; Jobbagy, E. G.

2015-12-01

The Gran Chaco is a hot, dry plain, that spans over 60 million hectares across Bolivia, Paraguay, Brazil and Argentina. It supports high biodiversity in its dry forest and savannahs, but is rapidly being converted to agriculture in response to growing soy demand and technology including genetic modification and zero-till, that has made cultivation in drier landscapes more viable. Under natural conditions, the deep-rooted, native vegetation of the Chaco effectively captured all rainfall for evapotranspiration resulting in near zero groundwater recharge under the dry forest. Conversion to shallower rooted soy and corn, combined with the fallow period prior to the growing season, reduces evapotranspiration and allows some water to percolate through the root zone and recharge the groundwater system. When this groundwater recharge occurs, it creates groundwater mounding and a hydraulic gradient that drives flow to adjacent landcover patches where recharge does not occur. As the watertable rises, groundwater becomes available to the deep-rooted, dry forest vegetation. We develop a soil and groundwater flow model to simulate infiltration, percolation, evaporation, rootwater uptake, groundwater recharge and the lateral transfer of water between adjacent landcover patches to quantify this groundwater subsidy from converted agricultural lands to remnant patches of dry forest.

Use of CT imaging to examine the coarse roots, rhizomes, and peat associated with creek bank Spartina alterniflora in fertilized and control creeks in Plum Island (MA)

EPA Science Inventory

We used computer-aided tomography (CT) to quantify the wet mass, abundance, and diameter of coarse roots and rhizomes as well as the wet mass and particle density of marsh peat in 7-year fertilized and control creeks in Plum Island (MA). In shallow soils (0 – 10 cm) and at dep...

Reliance on shallow soil water in a mixed-hardwood forest in central Pennsylvania

Treesearch

Katie P. Gaines; Jane W. Stanley; Frederick C. Meinzer; Katherine A. McCulloh; David R. Woodruff; Weile Chen; Thomas S. Adams; Henry Lin; David M. Eissenstat; Nathan Phillips

2015-01-01

We investigated depth of water uptake of trees on shale-derived soils in order to assess the importance of roots over a meter deep as a driver of water use in a central Pennsylvania catchment. This information is not only needed to improve basic understanding of water use in these forests but also to improve descriptions of root function at depth in hydrologic process...

The paradoxical distribution of a shallow-rooted keystone species away from surface water, near the water-limited edge of its range in the Sonoran Desert: Seed-seedling conflicts

NASA Astrophysics Data System (ADS)

Drezner, Taly Dawn

2013-02-01

Species distributions reflect limiting factors, particularly near the margins of their range where density and abundance decrease as environmental factors decrease or increase to non-optimal conditions. I test whether the keystone saguaro cactus (Carnegiea gigantea), a shallow-rooted species, is indeed distributed disproportionately in areas of concentrated drainage (runnels) in a water-limited population. Carnegiea and a common nurse were sampled at a marginal site in and out of areas with concentrated surface water and chi-square analysis was used to determine the pattern of distribution. In this study I found that, surprisingly, near the hot, water-limited edge of their range, C. gigantea are found significantly less often in areas where more water would be available to them. For example, while only 20% of nurses were on interfluves, half of Carnegiea protégé were there. One possible explanation is that the subsequent redistribution of seeds by water away from preferred microsites may be important in shaping the final pattern of successful establishment. The shallow-rooted Carnegiea relies entirely on surface water for its moisture; it is thus paradoxical that the surface water so fundamentally essential to its survival throughout its life appears to hinder its establishment in precisely those sites where the greatest surface water would be available, particularly near the water-limited edge of its range.

Reliance on shallow soil water in a mixed-hardwood forest in central Pennsylvania.

PubMed

Gaines, Katie P; Stanley, Jane W; Meinzer, Frederick C; McCulloh, Katherine A; Woodruff, David R; Chen, Weile; Adams, Thomas S; Lin, Henry; Eissenstat, David M

2016-04-01

We investigated depth of water uptake of trees on shale-derived soils in order to assess the importance of roots over a meter deep as a driver of water use in a central Pennsylvania catchment. This information is not only needed to improve basic understanding of water use in these forests but also to improve descriptions of root function at depth in hydrologic process models. The study took place at the Susquehanna Shale Hills Critical Zone Observatory in central Pennsylvania. We asked two main questions: (i) Do trees in a mixed-hardwood, humid temperate forest in a central Pennsylvania catchment rely on deep roots for water during dry portions of the growing season? (ii) What is the role of tree genus, size, soil depth and hillslope position on the depth of water extraction by trees? Based on multiple lines of evidence, including stable isotope natural abundance, sap flux and soil moisture depletion patterns with depth, the majority of water uptake during the dry part of the growing season occurred, on average, at less than ∼60 cm soil depth throughout the catchment. While there were some trends in depth of water uptake related to genus, tree size and soil depth, water uptake was more uniformly shallow than we expected. Our results suggest that these types of forests may rely considerably on water sources that are quite shallow, even in the drier parts of the growing season. © The Author 2015. Published by Oxford University Press.

Reliance on shallow soil water in a mixed-hardwood forest in central Pennsylvania

PubMed Central

Gaines, Katie P.; Stanley, Jane W.; Meinzer, Frederick C.; McCulloh, Katherine A.; Woodruff, David R.; Chen, Weile; Adams, Thomas S.; Lin, Henry; Eissenstat, David M.

2016-01-01

We investigated depth of water uptake of trees on shale-derived soils in order to assess the importance of roots over a meter deep as a driver of water use in a central Pennsylvania catchment. This information is not only needed to improve basic understanding of water use in these forests but also to improve descriptions of root function at depth in hydrologic process models. The study took place at the Susquehanna Shale Hills Critical Zone Observatory in central Pennsylvania. We asked two main questions: (i) Do trees in a mixed-hardwood, humid temperate forest in a central Pennsylvania catchment rely on deep roots for water during dry portions of the growing season? (ii) What is the role of tree genus, size, soil depth and hillslope position on the depth of water extraction by trees? Based on multiple lines of evidence, including stable isotope natural abundance, sap flux and soil moisture depletion patterns with depth, the majority of water uptake during the dry part of the growing season occurred, on average, at less than ∼60 cm soil depth throughout the catchment. While there were some trends in depth of water uptake related to genus, tree size and soil depth, water uptake was more uniformly shallow than we expected. Our results suggest that these types of forests may rely considerably on water sources that are quite shallow, even in the drier parts of the growing season. PMID:26546366

The combined effects of a long-term experimental drought and an extreme drought on the use of plant-water sources in a Mediterranean forest.

PubMed

Barbeta, Adrià; Mejía-Chang, Monica; Ogaya, Romà; Voltas, Jordi; Dawson, Todd E; Peñuelas, Josep

2015-03-01

Vegetation in water-limited ecosystems relies strongly on access to deep water reserves to withstand dry periods. Most of these ecosystems have shallow soils over deep groundwater reserves. Understanding the functioning and functional plasticity of species-specific root systems and the patterns of or differences in the use of water sources under more frequent or intense droughts is therefore necessary to properly predict the responses of seasonally dry ecosystems to future climate. We used stable isotopes to investigate the seasonal patterns of water uptake by a sclerophyll forest on sloped terrain with shallow soils. We assessed the effect of a long-term experimental drought (12 years) and the added impact of an extreme natural drought that produced widespread tree mortality and crown defoliation. The dominant species, Quercus ilex, Arbutus unedo and Phillyrea latifolia, all have dimorphic root systems enabling them to access different water sources in space and time. The plants extracted water mainly from the soil in the cold and wet seasons but increased their use of groundwater during the summer drought. Interestingly, the plants subjected to the long-term experimental drought shifted water uptake toward deeper (10-35 cm) soil layers during the wet season and reduced groundwater uptake in summer, indicating plasticity in the functional distribution of fine roots that dampened the effect of our experimental drought over the long term. An extreme drought in 2011, however, further reduced the contribution of deep soil layers and groundwater to transpiration, which resulted in greater crown defoliation in the drought-affected plants. This study suggests that extreme droughts aggravate moderate but persistent drier conditions (simulated by our manipulation) and may lead to the depletion of water from groundwater reservoirs and weathered bedrock, threatening the preservation of these Mediterranean ecosystems in their current structures and compositions. © 2014 John Wiley & Sons Ltd.

Seasonal plant water uptake patterns in the saline southeast Everglades ecotone.

PubMed

Ewe, Sharon M L; Sternberg, Leonel da S L; Childers, Daniel L

2007-07-01

The purpose of this study was to determine the seasonal water use patterns of dominant macrophytes coexisting in the coastal Everglades ecotone. We measured the stable isotope signatures in plant xylem water of Rhizophora mangle, Cladium jamaicense, and Sesuvium portulacastrum during the dry (DS) and wet (WS) seasons in the estuarine ecotone along Taylor River in Everglades National Park, FL, USA. Shallow soilwater and deeper groundwater salinity was also measured to extrapolate the salinity encountered by plants at their rooting zone. Average soil water oxygen isotope ratios (delta(18)O) was enriched (4.8 +/- 0.2 per thousand) in the DS relative to the WS (0.0 +/- 0.1 per thousand), but groundwater delta(18)O remained constant between seasons (DS: 2.2 +/- 0.4 per thousand; WS: 2.1 +/- 0.1 per thousand). There was an inversion in interstitial salinity patterns across the soil profile between seasons. In the DS, shallow water was euhaline [i.e., 43 practical salinity units (PSU)] while groundwater was less saline (18 PSU). In the WS, however, shallow water was fresh (i.e., 0 PSU) but groundwater remained brackish (14 PSU). All plants utilized 100% (shallow) freshwater during the WS, but in the DS R. mangle switched to a soil-groundwater mix (delta 55% groundwater) while C. jamaicense and S. portulacastrum continued to use euhaline shallow water. In the DS, based on delta(18)O data, the roots of R. mangle roots were exposed to salinities of 25.4 +/- 1.4 PSU, less saline than either C. jamaicense (39.1 +/- 2.2 PSU) or S. portulacastrum (38.6 +/- 2.5 PSU). Although the salinity tolerance of C. jamaicense is not known, it is unlikely that long-term exposure to high salinity is conducive to the persistence of this freshwater marsh sedge. This study increases our ecological understanding of how water uptake patterns of individual plants can contribute to ecosystem levels changes, not only in the southeast saline Everglades, but also in estuaries in general in response to global sea level rise and human-induced changes in freshwater flows.

Floodtide pulses after low tides in shallow subembayments adjacent to deep channels

USGS Publications Warehouse

Warner, J.C.; Schoellhamer, D.H.; Ruhl, C.A.; Burau, J.R.

2004-01-01

In shallow waters surface gravity waves (tides) propagate with a speed proportional to the square root of water depth (c=g(h+η)). As the ratio of free surface displacement to mean depth (η/h) approaches unity the wave will travel noticeably faster at high tide than at low tide, creating asymmetries in the tidal form. This physical process is explained analytically by the increased significance of friction and the nonlinear terms in the continuity and momentum equations. In a tidal system comprising a shallow bay adjacent to a deeper channel, tidal asymmetries will be more prevalent in the shallow bay. Thus strong barotropic gradients can be generated between the two, producing rapid accelerations of currents into the bay (relative to other bay tidal processes) and create a maximum peak in the flood tide that we describe as a floodtide pulse. These floodtide pulses can promote a landward flux of suspended-sediment into the bay. In Grizzly Bay (part of northern San Francisco Bay, USA), field observations verify the occurrence of floodtide pulses during the lowest low tides of the year. No pulses were observed in neighboring Honker Bay, which has an average depth ~30 cm greater than Grizzly Bay. Numerical simulations of northern San Francisco Bay using realistic bathymetry demonstrated that floodtide pulses occurred in Grizzly Bay but not in Honker Bay, consistent with the observations. Both observations and numerical simulations show that floodtide pulses promote a landward flux of sediment into Grizzly Bay. Numerical simulations of an idealized bay-channel system quantify the importance of mean depth and friction in creating these floodtide pulses. 

The MJO Transition from Shallow to Deep Convection in CloudSat/CALIPSO Data and GISS GCM Simulations

NASA Technical Reports Server (NTRS)

DelGenio, Anthony G.; Chen, Yonghua; Kim, Daehyun; Yao, Mao-Sung

2013-01-01

The relationship between convective penetration depth and tropospheric humidity is central to recent theories of the Madden-Julian oscillation (MJO). It has been suggested that general circulation models (GCMs) poorly simulate the MJO because they fail to gradually moisten the troposphere by shallow convection and simulate a slow transition to deep convection. CloudSat and Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO) data are analyzed to document the variability of convection depth and its relation to water vapor during the MJO transition from shallow to deep convection and to constrain GCM cumulus parameterizations. Composites of cloud occurrence for 10MJO events show the following anticipatedMJO cloud structure: shallow and congestus clouds in advance of the peak, deep clouds near the peak, and upper-level anvils after the peak. Cirrus clouds are also frequent in advance of the peak. The Advanced Microwave Scanning Radiometer for EarthObserving System (EOS) (AMSR-E) columnwater vapor (CWV) increases by;5 mmduring the shallow- deep transition phase, consistent with the idea of moisture preconditioning. Echo-top height of clouds rooted in the boundary layer increases sharply with CWV, with large variability in depth when CWV is between;46 and 68 mm. International Satellite Cloud Climatology Project cloud classifications reproduce these climatological relationships but correctly identify congestus-dominated scenes only about half the time. A version of the Goddard Institute for Space Studies Model E2 (GISS-E2) GCM with strengthened entrainment and rain evaporation that produces MJO-like variability also reproduces the shallow-deep convection transition, including the large variability of cloud-top height at intermediate CWV values. The variability is due to small grid-scale relative humidity and lapse rate anomalies for similar values of CWV. 1.

Root tensile strength of grey alder and mountain maple grown on a coarse grained eco-engineered slope in the Swiss Alps related to wood anatomical features

NASA Astrophysics Data System (ADS)

Kink, Dimitri; Bast, Alexander; Meyer, Christine; Meier, Wolfgang; Egli, Markus; Gärtner, Holger

2014-05-01

Steep, vegetation free slopes are a common feature in alpine areas. The material covering these slopes is prone to all kind of erosional processes, resulting in a high risk potential for population and infrastructure. This risk potential is likely to increase with the predicted change in the spatiotemporal distribution of precipitation events. A potential increase in extreme precipitation events will also result in a higher magnitude and frequency of erosional processes. In the Swiss Alps as in many other mountainous areas, there is a need to stabilize these slopes to reduce their direct or indirect hazard potential. In this regard, eco-engineering is a very promising and sustainable approach for slope stabilization. Planting trees and shrubs is a central task in eco-engineering. A developing vegetation cover will on one hand reduce the mechanical effects of rainfall by an increased interception, on the other hand, the root systems cause modifications of soil properties. Roots not only provide anchorage for the plants, they also promote soil aggregation and are able to penetrate possible shear horizons. Overall, anchorage of plants is at the same extend also stabilizing the near subsurface. When rainfall occurs, the saturated soil exerts downhill pressure to a tree or shrub. As long as the root distribution supports anchorage, the respective slope area remains stable. At this point, the tensile strength of the roots is a critical measure, because it is more likely that the supporting roots break than the entire root system being pulled out of the soil completely. As a consequence, root tensile strength is an important parameter in characterizing the soil stabilization potential of trees and shrubs. It is known that tree roots show a high variability in their anatomical structure depending on their depth below soil surface as well as their distance to the main stem. Therefore, we assume that these structural changes affect the tensile strength of every single root. In order to confirm this assumption and possibly find more important root properties which have an influence on soil stabilization, the root systems of seven trees (three grey alder, four mountain maple) were excavated and analyzed. The study site is a catchment, where shallow landslides are common. It is located in the Prättigau valley in the Eastern Swiss Alps and was eco-engineered in 1997. The substrate is coarse-grained morainic material, mean annual air temperature reaches 4.64°C, average precipitation is 1170 mm, and the altitude is about 1000 m a.s.l.. The root system of each tree was uncovered carefully by hand to keep the roots undamaged, before removal it was photographed in situ to document the root distribution. The root systems were then cut into single root pieces of about 20 cm length and the position of each sample was documented. The root samples were then hierarchically classified in several root classes. The tensile strength of more than 500 samples was determined. In addition, the values for age, diameter, and root moisture were ascertained. Since it was assumed, that the cellular structure of the roots has an influence on the tensile strength, two microscopic thin-sections were prepared from all successfully tested root samples. The microscopic analysis focused on anatomical parameters such as the size and number of vessels, their distribution as well as their conductivity. The results for the final correlation between the anatomical characteristics and the root's tensile strength are presented for both tree species.

State of the art on forest and shallow landslide interactions illustrated by two studies in the French Alps

NASA Astrophysics Data System (ADS)

Berger, F.; Dorren, L.; Lopez, J.; Allegra, C.

2009-04-01

The importance of mountain forests in the protection from natural hazards such as landslides was perceived already in ancient cultures. Allusions of these interactions can be found in ancient Greek, Hebrew, Roman and Chinese literature. In modern times, quantitative studies on the role of vegetation on slope stability started flourishing during the 1960's, with particular contributions from the USA, USSR and Japan, followed by Brazil, New Zealand, Canada, Sweden and Taiwan in the 1970's and 1980's. Forests influence slope stability though mechanical and hydrological effects. Empirical and scientific knowledge agree on the fact that the main effects of forests stands are considered to be: • Mechanical stabilisation due to the presence of roots • Soil moisture depletion as a result of transpiration and water interception by the canopy • Surcharge from the weight of trees The first two factors are beneficial to slope stability whilst the latter may be beneficial or harmful depending on the slope steepness and the potential failure mode. Roots type and morphology influence the capacity of a tree to stabilise slopes, although the failure surface has to be effectively penetrated by the roots in order to be stabilised. Generally, however, forests are considered beneficial for slope stabilization within the soil depth prospected by the tree's root system. So forest stands, depending on the slope value, the hydrological condition and the soil substrata, could have a positive effect on shallow landslide mitigation. Much of the research in the European Alps, however, focuses on the protection awarded by forests against avalanches and rockfalls, whilst little has been done to quantify their protection against landslides. This is in contrast with other mountain regions in the world (Oregon, Himalaya, Japan, British Columbia), where the relations between forests and landslides has been and continues to be studied throughoutly. In order to develop an efficient shallow landslide prevention and mitigation and due to the lack of scientific knowledge on the interaction between forest stands and landslide activities, there is a real need of research axis specifically devoted to the tree main effects cited before. The main objective of these thematically research axis should be an efficient integration of the effect of the forest vegetation in the modelling of shallow landslide dynamic. This presentation deals with the state of the art on forest and landslide interaction illustrated by two studies conducted in the French Alps. The first one attempts to reduce a gap in the scientific knowledge by quantifying the hazard of landslide occurrence considering vegetation effects, in the Combeloup forest on the French Alps, using a physically based spatial modelling approach. The second one present the added value of dendrogeomorphological analyse to evaluate the past activities of landslide terrain in relationship with the evolution of the forest cover.

Global simulation of interactions between groundwater and terrestrial ecosystems

NASA Astrophysics Data System (ADS)

Braakhekke, M. C.; Rebel, K.; Dekker, S. C.; Smith, B.; Van Beek, L. P.; Sutanudjaja, E.; van Kampenhout, L.; Wassen, M. J.

2016-12-01

In many places in the world ecosystems are influenced by the presence of a shallow groundwater table. In these regions upward water flux due to capillary rise increases soil moisture availability in the root zone, which has strong positive effect on evapotranspiration. Additionally it has important consequences for vegetation dynamics and fluxes of carbon and nitrogen. Under water limited conditions shallow groundwater stimulates vegetation productivity, and soil organic matter decomposition while under saturated conditions groundwater may have a negative effect on these processes due to lack of oxygen. Furthermore, since plant species differ with respect to their root distribution, preference for moisture conditions, and resistance to oxygen stress, shallow groundwater also influences vegetation type. Finally, processes such as denitrification and methane production occur under strictly anaerobic conditions and are thus strongly influenced by moisture availability. Most global hydrological models and several land surface models simulate groundwater table dynamics and their effects on land surface processes. However, these models typically have relatively simplistic representation of vegetation and do not consider changes in vegetation type and structure and are therefore less suitable to represent effects of groundwater on biogeochemical fluxes. Dynamic global vegetation models (DGVMs), describe land surface from an ecological perspective, combining detailed description of vegetation dynamics and structure and biogeochemical processes. These models are thus more appropriate to simulate the ecological and biogeochemical effects of groundwater interactions. However, currently virtually all DGVMs ignore these effects, assuming that water tables are too deep to affect soil moisture in the root zone. We have implemented a tight coupling between the dynamic global ecosystem model LPJ-GUESS and the global hydrological model PCR-GLOBWB. Using this coupled model we aim to study the influence of shallow groundwater on terrestrial ecosystem processes. We will present results of global simulations to demonstrate the effects on C, N, and water fluxes.

Root reinforcement and its contribution to slope stability in the Western Ghats of Kerala, India

NASA Astrophysics Data System (ADS)

Lukose Kuriakose, Sekhar; van Beek, L. P. H.

2010-05-01

The Western Ghats of Kerala, India is prone to shallow landslides and consequent debris flows. An earlier study (Kuriakose et al., DOI:10.1002/esp.1794) with limited data had already demonstrated the possible effects of vegetation on slope hydrology and stability. Spatially distributed root cohesion is one of the most important data necessary to assess the effects of anthropogenic disturbances on the probability of shallow landslide initiation, results of which are reported in sessions GM6.1 and HS13.13/NH3.16. Thus it is necessary to the know the upper limits of reinforcement that the roots are able to provide and its spatial and vertical distribution in such an anthropogenically intervened terrain. Root tensile strength and root pull out tests were conducted on nine species of plants that are commonly found in the region. They are 1) Rubber (Hevea Brasiliensis), 2) Coconut Palm (Cocos nucifera), 3) Jackfruit trees (Artocarpus heterophyllus), 4) Teak (Tectona grandis), 5) Mango trees (Mangifera indica), 6) Lemon grass (Cymbopogon citratus), 7) Gambooge (Garcinia gummi-gutta), 8) Coffee (Coffea Arabica) and 9) Tea (Camellia sinensis). About 1500 samples were collected of which only 380 could be tested (in the laboratory) due to breakage of roots during the tests. In the successful tests roots failed in tension. Roots having diameters between 2 mm and 12 mm were tested. Each sample tested had a length of 15 cm. Root pull out tests were conducted in the field. Root tensile strength vs root diameter, root pull out strength vs diameter, root diameter vs root depth and root count vs root depth relationships were derived. Root cohesion was computed for nine most dominant plants in the region using the perpendicular root model of Wu et al. (1979) modified by Schimidt et al. (2001). A soil depth map was derived using regression kriging as suggested by Kuriakose et al., (doi:10.1016/j.catena.2009.05.005) and used along with the land use map of 2008 to distribute the computed root tensile strength both vertically and spatially. Root cohesion varies significantly with the type of land use and the depth of soil. The computation showed that a maximum root reinforcement of 40 kPa was available in the first 30 cm of soil while exponentially decreased with depth to just about 3 kPa at 3 m depth. Mixed crops land use unit had the maximum root cohesion while fallow land, degraded forest and young rubber plantation had the lowest root reinforcement. These are the upper limits of root reinforcement that the vegetation can provide. When the soil is saturated, the bond between soil and roots reduces and thus the applicable root reinforcement is limited by the root pullout strength. Root reinforcement estimated from pullout strength vs diameter relationships was significantly lower than those estimated from tensile strength vs diameter relationships.

Effects of furrow irrigation on the growth, production, and water use efficiency of direct sowing rice.

PubMed

He, Chunlin

2010-08-03

Rice farming is the major crop production in Asia and is predicted to increase significantly in the near future in order to meet the demands for the increasing human population. Traditional irrigation methods used in rice farming often result in great water loss. New water-saving methods are urgently needed to reduce water consumption. Three field and pot experiments were conducted to evaluate the furrow irrigation (FI) system to improve water use efficiency (WUE) and production of direct sowing rice in southern China. Compared to the conventional irrigation (CI) system (continuous flooding irrigation), for every square hectometer of rice field, the FI system reduced water use by 3130 m3, or 48.1%, and increased grain production by 13.9% for an early cultivar. For a late cultivar, the FI system reduced water use by 2655 m3, or 40.6%, and an increase of grain production by 12.1%. The improved WUE in the FI system is attributed to (1) a significant reduction of irrigation rate, seepage, evaporation, and evapotranspiration; (2) a significant reduction in the reduced materials, such as ferrous ion (Fe2+), and therefore an increase in the vitality of the root system, evident by the increases in the number of white roots by 32.62%, and decreases in the number of black roots by 20.04% and yellow roots by 12.58%; the use of the FI system may also reduce humidity of the rice field and enhance gas transport in the soil and light penetration, which led to reduced rice diseases and increased leaf vitality; and (3) increases in tiller and effective spikes by 11.53% and the weight per thousand grains by 1.0 g. These findings suggest that the shallow FI system is a promising means for rice farming in areas with increasing water shortages.

Numerical model for the uptake of groundwater contaminants by phreatophytes

USGS Publications Warehouse

Widdowson, M.A.; El-Sayed, A.; Landmeyer, J.E.

2008-01-01

Conventional solute transport models do not adequately account for the effects of phreatophytic plant systems on contaminant concentrations in shallow groundwater systems. A numerical model was developed and tested to simulate threedimensional reactive solute transport in a heterogeneous porous medium. Advective-dispersive transport is coupled to biodegradation, sorption, and plantbased attenuation processes including plant uptake and sorption by plant roots. The latter effects are a function of the physical-chemical properties of the individual solutes and plant species. Models for plant uptake were tested and evaluated using the experimental data collected at a field site comprised of hybrid poplar trees. A non-linear equilibrium isotherm model best represented site conditions.

Clinical results with two different methods of root-end preparation and filling in apical surgery: mineral trioxide aggregate and adhesive resin composite.

PubMed

von Arx, Thomas; Hänni, Stefan; Jensen, Simon Storgård

2010-07-01

The aim of apical surgery is to hermetically seal the root canal system after root-end resection, thereby enabling periradicular healing. The objective of this nonrandomized prospective clinical study was to report results of 2 different root-end preparation and filling methods, ie, mineral trioxide aggregate (MTA) and an adhesive resin composite (Retroplast). The study included 353 consecutive cases with endodontic lesions limited to the periapical area. Root-end cavities were prepared with sonic microtips and filled with MTA (n = 178), or alternatively, a shallow concavity was prepared in the cut root face, with subsequent placement of an adhesive resin composite (Retroplast) (n = 175). Patients were recalled after 1 year. Cases were defined as healed when no clinical signs or symptoms were present and radiographs demonstrated complete or incomplete (scar tissue) healing of previous radiolucencies. The overall rate of healed cases was 85.5%. MTA-treated teeth demonstrated a significantly (P = .003) higher rate of healed cases (91.3%) compared with Retroplast-treated teeth (79.5%). Within the MTA group, 89.5%-100% of cases were classified as healed, depending on the type of treated tooth. In contrast, more variable rates ranging from 66.7%-100% were found in the Retroplast group. In particular, mandibular premolars and molars demonstrated considerably lower rates of healed cases when treated with Retroplast. MTA can be recommended for root-end filling in apical surgery, irrespective of the type of treated tooth. Retroplast should be used with caution for root-end sealing in apical surgery of mandibular premolars and molars. Copyright 2010 American Association of Endodontists. Published by Elsevier Inc. All rights reserved.

Degradation kinetics of chlorinated aliphatic hydrocarbons by methane oxidizers naturally-associated with wetland plant roots

NASA Astrophysics Data System (ADS)

Powell, C. L.; Goltz, M. N.; Agrawal, A.

2014-12-01

Chlorinated aliphatic hydrocarbons (CAHs) are common groundwater contaminants that can be removed from the environment by natural attenuation processes. CAH biodegradation can occur in wetland environments by reductive dechlorination as well as oxidation pathways. In particular, CAH oxidation may occur in vegetated wetlands, by microorganisms that are naturally associated with the roots of wetland plants. The main objective of this study was to evaluate the cometabolic degradation kinetics of the CAHs, cis-1,2-dichloroethene (cisDCE), trichloroethene (TCE), and 1,1,1-trichloroethane (1,1,1TCA), by methane-oxidizing bacteria associated with the roots of a typical wetland plant in soil-free system. Laboratory microcosms with washed live roots investigated aerobic, cometabolic degradation of CAHs by the root-associated methane-oxidizing bacteria at initial aqueous [CH4] ~ 1.9 mg L- 1, and initial aqueous [CAH] ~ 150 μg L- 1; cisDCE and TCE (in the presence of 1,1,1TCA) degraded significantly, with a removal efficiency of approximately 90% and 46%, respectively. 1,1,1TCA degradation was not observed in the presence of active methane oxidizers. The pseudo first-order degradation rate-constants of TCE and cisDCE were 0.12 ± 0.01 and 0.59 ± 0.07 d- 1, respectively, which are comparable to published values. However, their biomass-normalized degradation rate constants obtained in this study were significantly smaller than pure-culture studies, yet they were comparable to values reported for biofilm systems. The study suggests that CAH removal in wetland plant roots may be comparable to processes within biofilms. This has led us to speculate that the active biomass may be on the root surface as a biofilm. The cisDCE and TCE mass losses due to methane oxidizers in this study offer insight into the role of shallow, vegetated wetlands as an environmental sink for such xenobiotic compounds.

Degradation kinetics of chlorinated aliphatic hydrocarbons by methane oxidizers naturally-associated with wetland plant roots.

PubMed

Powell, C L; Goltz, M N; Agrawal, A

2014-12-01

Chlorinated aliphatic hydrocarbons (CAHs) are common groundwater contaminants that can be removed from the environment by natural attenuation processes. CAH biodegradation can occur in wetland environments by reductive dechlorination as well as oxidation pathways. In particular, CAH oxidation may occur in vegetated wetlands, by microorganisms that are naturally associated with the roots of wetland plants. The main objective of this study was to evaluate the cometabolic degradation kinetics of the CAHs, cis-1,2-dichloroethene (cisDCE), trichloroethene (TCE), and 1,1,1-trichloroethane (1,1,1TCA), by methane-oxidizing bacteria associated with the roots of a typical wetland plant in soil-free system. Laboratory microcosms with washed live roots investigated aerobic, cometabolic degradation of CAHs by the root-associated methane-oxidizing bacteria at initial aqueous [CH4] ~1.9mgL(-1), and initial aqueous [CAH] ~150μgL(-1); cisDCE and TCE (in the presence of 1,1,1TCA) degraded significantly, with a removal efficiency of approximately 90% and 46%, respectively. 1,1,1TCA degradation was not observed in the presence of active methane oxidizers. The pseudo first-order degradation rate-constants of TCE and cisDCE were 0.12±0.01 and 0.59±0.07d(-1), respectively, which are comparable to published values. However, their biomass-normalized degradation rate constants obtained in this study were significantly smaller than pure-culture studies, yet they were comparable to values reported for biofilm systems. The study suggests that CAH removal in wetland plant roots may be comparable to processes within biofilms. This has led us to speculate that the active biomass may be on the root surface as a biofilm. The cisDCE and TCE mass losses due to methane oxidizers in this study offer insight into the role of shallow, vegetated wetlands as an environmental sink for such xenobiotic compounds. Copyright © 2014 Elsevier B.V. All rights reserved.

The Influence of Tree Species on Subsurface Stormflow at the Hillslope Scale

NASA Astrophysics Data System (ADS)

Jost, G.; Weiler, M.

2006-12-01

This study investigates the effect of Norway spruce (Picea abies (L.) Karst) and European beech (Fagus sylvatica L.), two very common tree species in Central Europe, on soil water storage and runoff response to precipitation. We postulate that on the same type of soil, spruce with its shallow rooting system leads to different soil water storage and runoff responses than the deep rooting beech. To test this hypothesis, we chose a beech and a spruce stand with comparable soil type, a stagnic cambisol with a stagnic layer in about 50 cm soil depth. In each of the two stands we sprinkled a hillslope of 6 m by 10 m with intensities of 100 mm/h and 60 mm/h for one hour each. Surface and shallow interflow as well as interflow in different soil depths was collected by inserted sheet metals and gutters in 10 cm, 30 cm and 60 cm soil depth. Soil water storage responses were measured by 48 multiplexed TDR sensors at each hillslope. TDR wave-guides (20 cm long) were installed in a 45° angle in 10 cm, 30 cm, 50 cm and 70 cm soil depth. Volumetric water content was measured in 6 minute intervals. Sprinkling experiments show that even at intensities of 100 mm/h all the applied water infiltrates, independent of the vegetation cover. The deeper soil horizons respond immediately to the applied precipitation. This vertical water flux response is larger under beech. Under spruce most of the water transport happens in the topsoil layers (upper 40 cm), whereas under beech the entire soil profile down to 80 cm soil depth reacts to sprinkling. Under spruce at intensities of 100 mm/h the whole pore space is almost filled. The larger pores in the topsoil under beech stemming from higher biogenic activity and in the subsoil from more intense rooting are still far from reaching their maximum capacity. High antecedent soil water content (around field capacity) still doesn't cause infiltration excess overland flow but the time that it takes for the soil water storage to drain to its initial value is less than one hour. The hillslope at the spruce stand produces between 23% and 28% runoff. However, the beech hillslope produces roughly twice as much. These experiments show that the interactions between tree species and soil in the vadose zone lead to different pore systems and thus different responses to subsurface stormflow. Beech with its deeper rooting systems and its higher biogenic activity (lower C/N ratio) creates a very effective preferential flow path system that leads to greater amounts of subsurface stormflow. Under high antecedent soil water storage, saturation excess overland flow is more likely to occur in soils under spruce with its smaller preferential flow system.

Agricultural conservation planning framework: 2. Classification of riparian buffer design types with application to assess and map stream corridors.

PubMed

Tomer, M D; Boomer, K M B; Porter, S A; Gelder, B K; James, D E; McLellan, E

2015-05-01

A watershed's riparian corridor presents opportunities to stabilize streambanks, intercept runoff, and influence shallow groundwater with riparian buffers. This paper presents a system to classify these riparian opportunities and apply them toward riparian management planning in hydrologic unit code 12 watersheds. In two headwater watersheds from each of three landform regions found in Iowa and Illinois, high-resolution (3-m grid) digital elevation models were analyzed to identify spatial distributions of surface runoff contributions and zones with shallow water tables (SWTs) (within 1.5 m of the channel elevation) along the riparian corridors. Results were tabulated, and a cross classification was applied. Classes of buffers include those primarily placed to (i) trap runoff and sediment, (ii) influence shallow groundwater, (iii) address both runoff and shallow groundwater, and (iv) maintain/improve stream bank stability. Riparian buffers occupying about 2.5% of these six watersheds could effectively intercept runoff contributions from 81 to 94% of the watersheds' contributing areas. However, extents of riparian zones where a narrow buffer (<10 m wide) would adequately intercept runoff but where >25 m width of buffer vegetation could root to a SWT varied according to landform region ( < 0.10). Yet, these wide-SWT riparian zones were widespread and occupied 23 to 53% of the lengths of stream banks among the six watersheds. The wide-SWT setting provides opportunities to reduce dissolved nutrients (particularly NO-N) carried via groundwater. This riparian classification and mapping system is part of a ArcGIS toolbox and could provide a consistent basis to identify riparian management opportunities in Midwestern headwater catchments wherever high-resolution elevation data are available. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Colonization and community structure of root-associated microorganisms of Sabina vulgaris with soil depth in a semiarid desert ecosystem with shallow groundwater.

PubMed

Taniguchi, Takeshi; Usuki, Hiroyuki; Kikuchi, Junichi; Hirobe, Muneto; Miki, Naoko; Fukuda, Kenji; Zhang, Guosheng; Wang, Linhe; Yoshikawa, Ken; Yamanaka, Norikazu

2012-08-01

Arbuscular mycorrhizal fungi (AMF) have been observed in deep soil layers in arid lands. However, change in AMF community structure with soil depth and vertical distributions of the other root-associated microorganisms are unclear. Here, we examined colonization by AMF and dark septate fungi (DSF), as well as the community structure of AMF and endophytic fungi (EF) and endophytic bacteria (EB) in association with soil depth in a semiarid desert with shallow groundwater. Roots of Sabina vulgaris and soils were collected from surface to groundwater level at 20-cm intervals. Soil chemistry (water content, total N, and available P) and colonization of AMF and DSF were measured. Community structures of AMF, EF, and EB were examined by terminal restriction fragment length polymorphism analysis. AMF colonization decreased with soil depth, although it was mostly higher than 50%. Number of AMF phylotypes decreased with soil depth, but more than five phylotypes were observed at depths up to 100 cm. Number of AMF phylotypes had a significant and positive relationship with soil moisture level within 0-15% of soil water content. DSF colonization was high but limited to soil surface. Number of phylotypes of EF and EB were diverse even in deep soil layers, and the community composition was associated with the colonization and community composition of AMF. This study indicates that AMF species richness in roots decreases but is maintained in deep soil layers in semiarid regions, and change in AMF colonization and community structure associates with community structure of the other root-associated microorganisms.

Environmental Assessment for Repairs and Replacement of Overhead Electrical Line, Feeders N1, N3, and N6 Vandenberg Air Force Base, California

DTIC Science & Technology

2011-08-22

along almost the entire coast of California. Shallow- rooted , mesophyllic plant species that are often drought-deciduous and summer-dormant... root and debris zone of the host plant (Mattoni 1992). Pupae remain in diapause until at least the following flight season. The number of adult...Maschner et al. 1991; Snethkamp and Munns 1991; Lebow 2001; Nettles and Hamilton 2008. 1149/H Location/ lithic scatter/ historic ranch N1, N3 Unevaluated

Escapes from herbivory in relation to the structure of mangrove island macroalgal communities.

PubMed

Taylor, Phillip R; Littler, Mark M; Littler, Diane S

1986-07-01

Some shallow habitats that surround mangrove islands exhibit abruptly discontinuous macrophyte boundaries; in other regions, plant distributional patterns are less defined. Where distinct boundaries do occur, fleshy algae predominate on the roots of the red mangrove, Rhizophora mangle, which do not contact the bottom sediments ("hanging roots"), while calcifying algae dominate on the substratum-penetrating roots and banks (=embedded-root habitat) surrounding the mangrove thickets. Considerable natural-history and floristic information reveals that the fleshy hanging-root species are not specialists, for that type of habitat. Experimental transplants showed that on banks and embedded roots where there typically are abundant macroherbivores (particularly sea urchins), most fleshy algae are eliminated.The dominants of the hanging-root habitat (e.g, Acanthophora spicifera, Spyridia filamentosa, Caulerpa racemosa var. Occidentalis) are 6-20 times more susceptible to herbivores than the dominants of the embedded-root habitat (e.g., Halimeda opuntia f. triloba, H. monile). Consequently, we suggest the former are relegated to the spatial refugia from herbivores (=non-coexistence escapes) provided by the hanging roots. Factors associated with these palatability differences include higher average calorific values (6.5 times) of the fleshy hanging-root dominants, greater proportions of organic content (2.6 times) and the general absence of calcification. The dominants of the embedded-root habitat show reduced edibility as a probable consequence of low calorific values, heavy calcification and potential herbivore-detering secondary metabolites. Correlative evidence and preliminary experimental results tentatively indicate that, in the absence of macroherbivores, the hanging-root dominants, which exhibit production rates 4.7 times greater than the dominants of the embedded-root habitat, are better competitors for space.We suggest that variations in herbivory are responsible, in part, for maintaining greater algal diversity in mangrove systems. At a study site with abundant sea urchins, five algal species were found only in the embedded-root habitat three species were confined to the hanging roots, while three others occurred in both. At an urchin-free site, no macrophytes were found only on embedded-root substrata, while one (in trace amounts) was found only on hanging-root habitat and eight occurred in both. We predict that in the absence of herbivores, the species assemblage characteristic of the hanging-roots would exclude many of the dominants from the embedded-root habitat.

Characterising the range of seismogenic behaviour on detachment faults - the case of 13o20'N, Mid Atlantic Ridge.

NASA Astrophysics Data System (ADS)

Craig, T. J.; Parnell-Turner, R.

2017-12-01

Extension at slow- and intermediate-spreading mid-ocean ridges is commonly accommodated through slip on long-lived detachment faults. These curved, convex-upward faults consist of a steeply-dipping section thought to be rooted in the lower crust or upper mantle which rotates to progressively shallower dip-angles at shallower depths, resulting in a domed, sub-horizontal oceanic core complex at the seabed. Although it is accepted that detachment faults can accumulate kilometre-scale offsets over millions of years, the mechanism of slip, and their capacity to sustain the shear stresses necessary to produce large earthquakes, remains debated. In this presentation we will show a comprehensive seismological study of an active oceanic detachment fault system on the Mid-Atlantic Ridge near 13o20'N, combining the results from a local ocean-bottom seismograph deployment with waveform inversion of a series of larger, teleseismically-observed earthquakes. The coincidence of these two datasets provides a more complete characterisation of rupture on the fault, from its initial beginnings within the uppermost mantle to its exposure at the surface. Our results demonstrate that although slip on the steeply-dipping portion of detachment fault is accommodated by failure in numerous microearthquakes, the shallower-dipping section of the fault within the upper few kilometres is relatively strong, and is capable of producing large-magnitude earthquakes. Slip on the shallow portion of active detachment faults at relatively low angles may therefore account for many more large-magnitude earthquakes at mid-ocean ridges than previously thought, and suggests that the lithospheric strength at slow-spreading mid-ocean ridges may be concentrated at shallow depths.

Modeling Water and Nutrient Transport through the Soil-Root-Canopy Continuum: Explicitly Linking the Below- and Above-Ground Processes

NASA Astrophysics Data System (ADS)

Kumar, P.; Quijano, J. C.; Drewry, D.

2010-12-01

Vegetation roots provide a fundamental link between the below ground water and nutrient dynamics and above ground canopy processes such as photosynthesis, evapotranspiration and energy balance. The “hydraulic architecture” of roots, consisting of the structural organization of the root system and the flow properties of the conduits (xylem) as well as interfaces with the soil and the above ground canopy, affect stomatal conductance thereby directly linking them to the transpiration. Roots serve as preferential pathways for the movement of moisture from wet to dry soil layers during the night, both from upper soil layer to deeper layers during the wet season (‘hydraulic descent’) and vice-versa (‘hydraulic lift’) as determined by the moisture gradients. The conductivities of transport through the root system are significantly, often orders of magnitude, larger than that of the surrounding soil resulting in movement of soil-moisture at rates that are substantially larger than that through the soil. This phenomenon is called hydraulic redistribution (HR). The ability of the deep-rooted vegetation to “bank” the water through hydraulic descent during wet periods for utilization during dry periods provides them with a competitive advantage. However, during periods of hydraulic lift these deep-rooted trees may facilitate the growth of understory vegetation where the understory scavenges the hydraulically lifted soil water. In other words, understory vegetation with relatively shallow root systems have access to the banked deep-water reservoir. These inter-dependent root systems have a significant influence on water cycle and ecosystem productivity. HR induced available moisture may support rhizosphere microbial and mycorrhizal fungi activities and enable utilization of heterogeneously distributed water and nutrient resources To capture this complex inter-dependent nutrient and water transport through the soil-root-canopy continuum we present modeling results using coupled partial differential equations of transport in soils and roots along with that for nutrient dynamics. We study the feedbkack of HR on the dynamics of water and nitrogen cycling in the soil and how these dynamics influence root water and nitrogen uptake and consequently carbon assimilation by the canopy. The forcing data is obtained from the Ameriflux Tower located in Blodgett Forest, Sierra Nevada, California. We consider single-species (Ponderosa Pine) and multi-species (overstory Ponderosa Pine and understory shrubs) interaction. When single species is considered, the near surface soil-moisture available from HR during dry summer season is an important source of evaporation and contributes significantly to the total ET flux. However, when multi-species interactions are taken into account, the soil-water from the HR becomes an important source of transpiration from the understory. The results also show that passive plant nitrogen uptake is higher when HR is present and it is critical for sustaining expected rates of carbon assimilation.

Comparison of sap flux data from two instrumented tree species in a forested catchment with different levels of water stress

NASA Astrophysics Data System (ADS)

Hartsough, P. C.; Roudneva, E.; Malazian, A. I.; Meadows, M. W.; Kelly, A. E.; Bales, R. C.; Goulden, M.; Hopmans, J. W.

2011-12-01

Two trees were instrumented with heat pulse sapflux sensors in the Southern Sierra Critical Zone Observatory (SSCZO) within the Kings River Experimental Watershed (KREW) to better understand transpiration as it relates to water availability from deeper sources. At the first instrumented site, CZT-1, a White Fir (Abies concolor) was instrumented on a flat ridge with access to deep soil moisture. Extensive monitoring of shallow and deep soil regions confirm that there is significant soil water available from 100-400cm as the tree exhausts water from shallower depths. A root excavation of an adjacent tree shows the roots distributed from 30-150cm with limited roots available to access deeper soil water and water stored in the saprolite. At the second instrumented site, CZT-2, a Ponderosa Pine (Pinus Ponderosa) was instrumented with a similar suite of sap flow and soil sensors. The CZT-2 site is on a slight slope and is characterized by shallow soils (<90cm) with extensive cobbles and bedrock outcrops with limited access to deeper soil or saprolite water. The second site also sits in the open while the first site is more protected in a closed forest. The two sites show different responses to changes in rain and snow loading from above as well as soil drainage and water depletion from below. They also have different thresholds for transpiration shut down both due to late season water deficit and also during winter periods where air temperatures are high enough to permit photosynthesis. Sap flux data are supplemented by extensive soil water content and potential measurements around both trees as well as evapotranspiration measurements from a 50m flux tower located between the two instrumented trees.

Estimating the effect of shallow groundwater on diurnal heat transport in a vadose zone

NASA Astrophysics Data System (ADS)

Jiang, Jianmei; Zhao, Lin; Zhai, Zhe

2016-09-01

The influence of shallow groundwater on the diurnal heat transport of the soil profile was analyzed using a soil sensor automatic monitoring system that continuously measures temperature and water content of soil profiles to simulate heat transport based on the Philip and de Vries (PDV) model. Three experiments were conducted to measure soil properties at depths of 5 cm, 10 cm, 20 cm, and 30 cm when groundwater tables reached 10 cm, 30 cm, and 60 cm (Experiments I, II, and III). Results show that both the soil temperature near shallow groundwater and the soil water content were effectively simulated by the PDV model. The root mean square errors of the temperature at depths of 5 cm, 10 cm, and 20 cm were 1.018°C, 0.909°C, and 0.255°C, respectively. The total heat flux generated the convergent and divergent planes in space-time fields with valley values of-161.5W•m-2 at 7:30 and-234.6W•m-2 at 11:10 in Experiments II and III, respectively. The diurnal heat transport of the saturated soil occurred in five stages, while that of saturated-unsaturated and unsaturated soil profiles occurred in four stages because high moisture content led to high thermal conductivity, which hastened the heat transport.

Root niche separation can explain avoidance of seasonal drought stress and vulnerability of overstory trees to extended drought in a mature Amazonian forest

NASA Astrophysics Data System (ADS)

Ivanov, Valeriy Y.; Hutyra, Lucy R.; Wofsy, Steven C.; Munger, J. William; Saleska, Scott R.; de Oliveira, Raimundo C., Jr.; de Camargo, Plínio B.

2012-12-01

Large areas of Amazonian evergreen forest experience seasonal droughts extending for three or more months, yet show maximum rates of photosynthesis and evapotranspiration during dry intervals. This apparent resilience is belied by disproportionate mortality of the large trees in manipulations that reduce wet season rainfall, occurring after 2-3 years of treatment. The goal of this study is to characterize the mechanisms that produce these contrasting ecosystem responses. A mechanistic model is developed based on the ecohydrological framework of TIN (Triangulated Irregular Network)-based Real Time Integrated Basin Simulator + Vegetation Generator for Interactive Evolution (tRIBS+VEGGIE). The model is used to test the roles of deep roots and soil capillary flux to provide water to the forest during the dry season. Also examined is the importance of "root niche separation," in which roots of overstory trees extend to depth, where during the dry season they use water stored from wet season precipitation, while roots of understory trees are concentrated in shallow layers that access dry season precipitation directly. Observational data from the Tapajós National Forest, Brazil, were used as meteorological forcing and provided comprehensive observational constraints on the model. Results strongly suggest that deep roots with root niche separation adaptations explain both the observed resilience during seasonal drought and the vulnerability of canopy-dominant trees to extended deficits of wet season rainfall. These mechanisms appear to provide an adaptive strategy that enhances productivity of the largest trees in the face of their disproportionate heat loads and water demand in the dry season. A sensitivity analysis exploring how wet season rainfall affects the stability of the rainforest system is presented.

Hydraulic redistribution by two semi-arid shrub species: Implications for Sahelianagro-ecosystems

EPA Science Inventory

Hydraulic redistribution is the process of passive water movement from deeper moist soil to shallower dry soil layers using plant roots as conduits. Results from this study indicate that this phenomenon exists among two shrub species (Guiera senegalensis and Piliostigma reticulat...

Nutrient cycling and Above- and Below-ground Interactions in a Runoff Agroforestry System Applied with Composted Tree Trimmings

NASA Astrophysics Data System (ADS)

Ilani, Talli; Ephrath, Jhonathan; Silberbush, Moshe; Berliner, Pedro

2014-05-01

The primary production in arid zones is limited due to shortage of water and nutrients. Conveying flood water and storing it in plots surrounded by embankments allows their cropping. The efficient exploitation of the stored water can be achieved through an agroforestry system, in which two crops are grown simultaneously: annual crops with a shallow root system and trees with a deeper root system. We posit that the long-term productivity of this system can be maintained by intercropping symbiotic N fixing shrubs with annual crops, and applying the pruned and composted shrub leaves to the soil, thus ensuring an adequate nitrogen level (a limiting factor in drylands) in the soil. To test our hypothesis we carried a two year trial in which fast-growing acacia (A. saligna) trees were the woody component and maize (Zea mays L.) the intercrop. Ten treatments were applied over two maize growth seasons to examine the below- and above-ground effects of tree pruning, compost application and interactions. The addition of compost in the first growth season led to an increase of the soil organic matter reservoir, which was the main N source for the maize during the following growth season. In the second growth season the maize yield was significantly higher in the plots to which compost was applied. Pruning the tree's canopies changed the trees spatial and temporal root development, allowing the annual crop to develop between the trees. The roots of pruned trees intercropped with maize penetrated deeper in the soil. The intercropping of maize within pruned trees and implementing compost resulted in a higher water use efficiency of the water stored in the soil when compared to the not composted and monoculture treatments. The results presented suggest that the approach used in this study can be the basis for achieving sustainable agricultural production under arid conditions.

The effect of modifying rooting depths and nitrification inhibitors on nutrient uptake from organic biogas residues in maize

NASA Astrophysics Data System (ADS)

Dietrich, Charlotte C.; Koller, Robert; Nagel, Kerstin A.; Schickling, Anke; Schrey, Silvia D.; Jablonowski, Nicolai D.

2017-04-01

Optimizing the application of and nutrient uptake from organic nutrient sources, such as the nutrient-rich residues ("digestates") from the biogas industry, is becoming a viable option in remediating fertility on previously unsuitable soils for agricultural utilization. Proposedly, concurrent changes in root system architecture and functioning could also serve as the basis of future phytomining approaches. Herein, we evaluate the effect of spatial nutrient availability and nitrification on maize root architecture and nutrient uptake. We test these effects by applying maize-based digestate at a rate of 170 kg/ha in layers of varying depths (10, 25 and 40 cm) and through either the presence or absence of nitrification inhibitors. In order to regularly monitor above- and below-ground plant biomass production, we used the noninvasive phenotyping platform, GROWSCREEN-Rhizo at the Forschungszentrum Jülich, using rhizotrons (Nagel et al., 2012). Measured parameters included projected plant height and leaf area, as well as root length and spatial distribution. Additionally, root diameters were quantified after the destructive harvest, 21 days after sowing (DAS). Spatial nutrient availability significantly affected root system architecture, as for example root system size -the area occupied by roots- increased alongside nutrient layer depths. Fertilization also positively affected root length density (RLD). Within fertilized layers, the presence of nitrification inhibitors increased RLD by up to 30% and was most pronounced in the fine root biomass fraction (0.1 to 0.5mm). Generally, nitrification inhibitors promoted early plant growth by up to 45% across treatments. However, their effect varied in dependence of layer depths, leading to a time-delayed response in deeper layers, accounting for plants having to grow significantly longer roots in order to reach fertilized substrate. Nitrification inhibitors also initiated the comparatively early on-set of growth differences in shallower layers, where their effect on plant growth was temporarily most pronounced. At final harvest (21 DAS) however, effects of nitrification inhibitors on plant height were visible only in deeper layers. Furthermore, the statistically significant interaction between the factors time x layer depths x nitrification inhibitors underlined the dynamic influence of nitrification inhibitors on plant growth over time and across rooting depths. This study offers insights into optimizing nutrient uptake and plant productivity by (re-) using residues from the biogas industry. It is among the first to monitor and try to explain the dynamics of nitrification inhibitors on root system architecture over time. A modified N-fertilization application scheme might also serve as a promising tool in optimizing phytoremediation and phytomining techniques through predictably altering root structure in fertilized layers. References: Nagel, K. A. ; Putz, A. ; Gilmer, F. ; Heinz, K. ; Fischbach, A. ; Pfeifer, J. ; Faget, M. ; Blossfeld, S. ; Ernst, M. ; Dimaki, C. ; Kastenholz, B. ; Kleinert, A.-K. ; Galinski, A. ; Scharr, H. ; Fiorani, F. ; Schurr, U. (2012): GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons.
Functional plant biology 39(11), 891-904.

Depth-varying seismogenesis on an oceanic detachment fault at 13°20‧N on the Mid-Atlantic Ridge

NASA Astrophysics Data System (ADS)

Craig, Timothy J.; Parnell-Turner, Ross

2017-12-01

Extension at slow- and intermediate-spreading mid-ocean ridges is commonly accommodated through slip on long-lived faults called oceanic detachments. These curved, convex-upward faults consist of a steeply-dipping section thought to be rooted in the lower crust or upper mantle which rotates to progressively shallower dip-angles at shallower depths. The commonly-observed result is a domed, sub-horizontal oceanic core complex at the seabed. Although it is accepted that detachment faults can accumulate kilometre-scale offsets over millions of years, the mechanism of slip, and their capacity to sustain the shear stresses necessary to produce large earthquakes, remains subject to debate. Here we present a comprehensive seismological study of an active oceanic detachment fault system on the Mid-Atlantic Ridge near 13°20‧N, combining the results from a local ocean-bottom seismograph deployment with waveform inversion of a series of larger teleseismically-observed earthquakes. The unique coincidence of these two datasets provides a comprehensive definition of rupture on the fault, from the uppermost mantle to the seabed. Our results demonstrate that although slip on the deep, steeply-dipping portion of detachment faults is accommodated by failure in numerous microearthquakes, the shallow, gently-dipping section of the fault within the upper few kilometres is relatively strong, and is capable of producing large-magnitude earthquakes. This result brings into question the current paradigm that the shallow sections of oceanic detachment faults are dominated by low-friction mineralogies and therefore slip aseismically, but is consistent with observations from continental detachment faults. Slip on the shallow portion of active detachment faults at relatively low angles may therefore account for many more large-magnitude earthquakes at mid-ocean ridges than previously thought, and suggests that the lithospheric strength at slow-spreading mid-ocean ridges may be concentrated at shallow depths.

Does apical root resection in endodontic microsurgery jeopardize the prosthodontic prognosis?

PubMed Central

Cho, Sin-Yeon

2013-01-01

Apical surgery cuts off the apical root and the crown-to-root ratio becomes unfavorable. Crown-to-root ratio has been applied to periodontally compromised teeth. Apical root resection is a different matter from periodontal bone loss. The purpose of this paper is to review the validity of crown-to-root ratio in the apically resected teeth. Most roots have conical shape and the root surface area of coronal part is wider than apical part of the same length. Therefore loss of alveolar bone support from apical resection is much less than its linear length.The maximum stress from mastication concentrates on the cervical area and the minimum stress was found on the apical 1/3 area. Therefore apical root resection is not so harmful as periodontal bone loss. Osteotomy for apical resection reduces longitudinal width of the buccal bone and increases the risk of endo-perio communication which leads to failure. Endodontic microsurgery is able to realize 0 degree or shallow bevel and precise length of root resection, and minimize the longitudinal width of osteotomy. The crown-to-root ratio is not valid in evaluating the prosthodontic prognosis of the apically resected teeth. Accurate execution of endodontic microsurgery to preserve the buccal bone is essential to avoid endo-perio communication. PMID:23741707

Root Architecture Responses: In Search of Phosphate1

PubMed Central

Kanno, Satomi; Nussaume, Laurent

2014-01-01

Soil phosphate represents the only source of phosphorus for plants and, consequently, is its entry into the trophic chain. This major component of nucleic acids, phospholipids, and energy currency of the cell (ATP) can limit plant growth because of its low mobility in soil. As a result, root responses to low phosphate favor the exploration of the shallower part of the soil, where phosphate tends to be more abundant, a strategy described as topsoil foraging. We will review the diverse developmental strategies that can be observed among plants by detailing the effect of phosphate deficiency on primary and lateral roots. We also discuss the formation of cluster roots: an advanced adaptive strategy to cope with low phosphate availability observed in a limited number of species. Finally, we will put this work into perspective for future research directions. PMID:25341534

Untangling the effects of shallow groundwater and deficit irrigation on irrigation water productivity in arid region: New conceptual model.

PubMed

Xue, Jingyuan; Huo, Zailin; Wang, Fengxin; Kang, Shaozhong; Huang, Guanhua

2018-04-01

Water scarcity and salt stress are two main limitations for agricultural production. Groundwater evapotranspiration (ET g ) with upward salt movement plays an important role in crop water use and water productivity in arid regions, and it can compensate the impact of deficit irrigation on crop production. Thus, comprehensive impacts of shallow groundwater and deficit irrigation on crop water use results in an improvement of irrigation water productivity (IWP). However, it is difficult to quantify the effects of groundwater and deficit irrigation on IWP. In this study, we built an IWP evaluation model coupled with a water and salt balance model and a crop yield estimation model. As a valuable tool of IWP simulation, the calibrated model was used to investigate the coupling response of sunflower IWP to irrigation water depths (IWDs), groundwater table depth (GTDs) and groundwater salinities (GSs). A total of 210 scenarios were run in which five irrigation water depths (IWDs) and seven groundwater table depths (GTDs) and six groundwater salinities (GSs) were used. Results indicate that increasing GS clearly increases the negative effect on a crop's actual evapotranspiration (ET a ) as salt accumulation in root zone. When GS is low (0.5-1g/L), increasing GTD produces more positive effect than negative effect. In regard to relatively high GS (2-5g/L), the negative effect of shallow-saline groundwater reaches a maximum at 2m GTD. Additionally, the salt concentration in the root zone maximizes its value at 2.0m GTD. In most cases, increasing GTD and GS reduces the benefits of irrigation water and IWP. The IWP increases with decreasing irrigation water. Overall, in arid regions, capillary rise of shallow groundwater can compensate for the lack of irrigation water and improve IWP. By improving irrigation schedules and taking advantages of shallow saline groundwater, we can obtain higher IWP. Copyright © 2017 Elsevier B.V. All rights reserved.

Deep rooting conferred by DEEPER ROOTING 1 enhances rice yield in paddy fields.

PubMed

Arai-Sanoh, Yumiko; Takai, Toshiyuki; Yoshinaga, Satoshi; Nakano, Hiroshi; Kojima, Mikiko; Sakakibara, Hitoshi; Kondo, Motohiko; Uga, Yusaku

2014-07-03

To clarify the effect of deep rooting on grain yield in rice (Oryza sativa L.) in an irrigated paddy field with or without fertilizer, we used the shallow-rooting IR64 and the deep-rooting Dro1-NIL (a near-isogenic line homozygous for the Kinandang Patong allele of DEEPER ROOTING 1 (DRO1) in the IR64 genetic background). Although total root length was similar in both lines, more roots were distributed within the lower soil layer of the paddy field in Dro1-NIL than in IR64, irrespective of fertilizer treatment. At maturity, Dro1-NIL showed approximately 10% higher grain yield than IR64, irrespective of fertilizer treatment. Higher grain yield of Dro1-NIL was mainly due to the increased 1000-kernel weight and increased percentage of ripened grains, which resulted in a higher harvest index. After heading, the uptake of nitrogen from soil and leaf nitrogen concentration were higher in Dro1-NIL than in IR64. At the mid-grain-filling stage, Dro1-NIL maintained higher cytokinin fluxes from roots to shoots than IR64. These results suggest that deep rooting by DRO1 enhances nitrogen uptake and cytokinin fluxes at late stages, resulting in better grain filling in Dro1-NIL in a paddy field in this study.

Modeling soil moisture memory in savanna ecosystems

NASA Astrophysics Data System (ADS)

Gou, S.; Miller, G. R.

2011-12-01

Antecedent soil conditions create an ecosystem's "memory" of past rainfall events. Such soil moisture memory effects may be observed over a range of timescales, from daily to yearly, and lead to feedbacks between hydrological and ecosystem processes. In this study, we modeled the soil moisture memory effect on savanna ecosystems in California, Arizona, and Africa, using a system dynamics model created to simulate the ecohydrological processes at the plot-scale. The model was carefully calibrated using soil moisture and evapotranspiration data collected at three study sites. The model was then used to simulate scenarios with various initial soil moisture conditions and antecedent precipitation regimes, in order to study the soil moisture memory effects on the evapotranspiration of understory and overstory species. Based on the model results, soil texture and antecedent precipitation regime impact the redistribution of water within soil layers, potentially causing deeper soil layers to influence the ecosystem for a longer time. Of all the study areas modeled, soil moisture memory of California savanna ecosystem site is replenished and dries out most rapidly. Thus soil moisture memory could not maintain the high rate evapotranspiration for more than a few days without incoming rainfall event. On the contrary, soil moisture memory of Arizona savanna ecosystem site lasts the longest time. The plants with different root depths respond to different memory effects; shallow-rooted species mainly respond to the soil moisture memory in the shallow soil. The growing season of grass is largely depended on the soil moisture memory of the top 25cm soil layer. Grass transpiration is sensitive to the antecedent precipitation events within daily to weekly timescale. Deep-rooted plants have different responses since these species can access to the deeper soil moisture memory with longer time duration Soil moisture memory does not have obvious impacts on the phenology of woody plants, as these can maintain transpiration for a longer time even through the top soil layer dries out.

Precipitation patterns and moisture fluxes in a sandy, tropical environment with a shallow water table

NASA Astrophysics Data System (ADS)

Minihane, M. R.; Freyberg, D. L.

2011-08-01

Identifying the dominant mechanisms controlling recharge in shallow sandy soils in tropical climates has received relatively little attention. Given the expansion of coastal fill using marine sands and the growth of coastal populations throughout the tropics, there is a need to better understand the nature of water balances in these settings. We use time series of field observations at a coastal landfill in Singapore coupled with numerical modeling using the Richards' equation to examine the impact of precipitation patterns on soil moisture dynamics, including percolation past the root zone and recharge, in such an environment. A threshold in total precipitation event depth, much more so than peak precipitation intensity, is the strongest event control on recharge. However, shallow antecedent moisture, and therefore the timing between events along with the seasonal depth to water table, also play significant roles in determining recharge amounts. For example, at our field site, precipitation events of less than 3 mm per event yield little to no direct recharge, but for larger events, moisture content changes below the root zone are linearly correlated to the product of the average antecedent moisture content and the total event precipitation. Therefore, water resources planners need to consider identifying threshold precipitation volumes, along with the multiple time scales that capture variability in event antecedent conditions and storm frequency in assessing the role of recharge in coastal water balances in tropical settings.

Effects of shallow water table, salinity and frequency of irrigation water on the date palm water use

NASA Astrophysics Data System (ADS)

Askri, Brahim; Ahmed, Abdelkader T.; Abichou, Tarek; Bouhlila, Rachida

2014-05-01

In southern Tunisia oases, waterlogging, salinity, and water shortage represent serious threats to the sustainability of irrigated agriculture. Understanding the interaction between these problems and their effects on root water uptake is fundamental for suggesting possible options of improving land and water productivity. In this study, HYDRUS-1D model was used in a plot of farmland located in the Fatnassa oasis to investigate the effects of waterlogging, salinity, and water shortage on the date palm water use. The model was calibrated and validated using experimental data of sap flow density of a date palm, soil hydraulic properties, water table depth, and amount of irrigation water. The comparison between predicted and observed data for date palm transpiration rates was acceptable indicating that the model could well estimate water consumption of this tree crop. Scenario simulations were performed with different water table depths, and salinities and frequencies of irrigation water. The results show that the impacts of water table depth and irrigation frequency vary according to the season. In summer, high irrigation frequency and shallow groundwater are needed to maintain high water content and low salinity of the root-zone and therefore to increase the date palm transpiration rates. However, these factors have no significant effect in winter. The results also reveal that irrigation water salinity has no significant effect under shallow saline groundwater.

Water use patterns of co-occurring C3 and C4 shrubs in the Gurbantonggut desert in northwestern China.

PubMed

Tiemuerbieke, Bahejiayinaer; Min, Xiao-Jun; Zang, Yong-Xin; Xing, Peng; Ma, Jian-Ying; Sun, Wei

2018-09-01

In water-limited ecosystems, spatial and temporal partitioning of water sources is an important mechanism that facilitates plant survival and lessens the competition intensity of co-existing plants. Insights into species-specific root functional plasticity and differences in the water sources of co-existing plants under changing water conditions can aid in accurate prediction of the response of desert ecosystems to future climate change. We used stable isotopes of soil water, groundwater and xylem water to determine the seasonal and inter- and intraspecific differences variations in the water sources of six C 3 and C 4 shrubs in the Gurbantonggut desert. We also measured the stem water potentials to determine the water stress levels of each species under varying water conditions. The studied shrubs exhibited similar seasonal water uptake patterns, i.e., all shrubs extracted shallow soil water recharged by snowmelt water during early spring and reverted to deeper water sources during dry summer periods, indicating that all of the studied shrubs have dimorphic root systems that enable them to obtain water sources that differ in space and time. Species in the C 4 shrub community exhibited differences in seasonal water absorption and water status due to differences in topography and rooting depth, demonstrating divergent adaptations to water availability and water stress. Haloxylon ammodendron and T. ramosissima in the C 3 /C 4 mixed community were similar in terms of seasonal water extraction but differed with respect to water potential, which indicated that plant water status is controlled by both root functioning and shoot eco-physiological traits. The two Tamarix species in the C 3 shrub community were similar in terms of water uptake and water status, which suggests functional convergence of the root system and physiological performance under same soil water conditions. In different communities, Haloxylon ammodendron differed in terms of summer water extraction, which suggests that this species exhibits plasticity with respect to rooting depth under different soil water conditions. Shrubs in the Gurbantonggut desert displayed varying adaptations across species and communities through divergent root functioning and shoot eco-physiological traits. Copyright © 2018 Elsevier B.V. All rights reserved.

Limitations to CO2-induced growth enhancement in pot studies.

PubMed

McConnaughay, K D M; Berntson, G M; Bazzaz, F A

1993-07-01

Recently, it has been suggested that small pots may reduce or eliminate plant responses to enriched CO 2 atmospheres due to root restriction. While smaller pot volumes provide less physical space available for root growth, they also provide less nutrients. Reduced nutrient availability alone may reduce growth enhancement under elevated CO 2 . To investigate the relative importance of limited physical rooting space separate from and in conjunction with soil nutrients, we grew plants at ambient and double-ambient CO 2 levels in growth containers of varied volume, shape, nutrient concentration, and total nutrient content. Two species (Abutilon theophrasti, a C 3 dicot with a deep tap root andSetaria faberii, a C 4 monocot with a shallow diffuse root system) were selected for their contrasting physiology and root architecture. Shoot demography was determined weekly and biomass was determined after eight and ten weeks of growth. Increasing total nutrients, either by increasing nutrient concentration or by increasing pot size, increased plant growth. Further, increasing pot size while maintaining equal total nutrients per pot resulted in increased total biomass for both species. CO 2 -induced growth and reproductive yield enhancements were greatest in pots with high nutrient concentrations, regardless of total nutrient content or pot size, and were also mediated by the shape of the pot. CO 2 -induced growth and reproductive yield enhancements were unaffected by pot size (growth) or were greater in small pots (reproductive yield), regardless of total nutrient content, contrary to predictions based on earlier studies. These results suggest that several aspects of growth conditions within pots may influence the CO 2 responses of plants; pot size, pot shape, the concentration and total amount of nutrient additions to pots may lead to over-or underestimates of the CO 2 responses of real-world plants.

Using chloride and chlorine-36 as soil-water tracers to estimate deep percolation at selected locations on the U.S. Department of Energy Hanford site, Washington

USGS Publications Warehouse

Prych, Edmund A.

1995-01-01

Long-term average deep-percolation rates of water from precipitation on the U.S. Department of Energy Hanford Site in semiarid south-central Washington, as estimated by a chloride mass-balance method, range from 0.008 to 0.30 mm/yr (millimeters per year) at nine locations covered by a variety of fine-grain soils and vegetated with sagebrush and other deep-rooted plants plus sparse shallow-rooted grasses. Deep-percolation rates estimated using a chlorine-36 bomb-pulse method at three of the nine locations range from 2.1 to 3.4 mm/yr. Because the mass-balance method may underestimate percolation rates and the bomb-pulse method probably overestimates percolation rates, estimates by the two methods probably bracket actual rates. These estimates, as well as estimates by previous investigators who used different methods, are a small fraction of mean annual precipitation, which ranges from about 160 to 210 mm/yr at the different test locations. Estimates by the mass-balance method at four locations in an area that is vegetated only with sparse shallow-rooted grasses range from 0.39 to 2.0 mm/yr. Chlorine-36 data at one location in this area were sufficient only to determine that the upper limit of deep percolation is more than 5.1 mm/yr. Although estimates for locations in this area are larger than the estimates for locations with deep-rooted plants, they are at the lower end of the range of estimates for this area made by previous investigators.

EAG Eminent Speaker: Two types of Archean continental crust: plume and plate tectonics on early Earth

NASA Astrophysics Data System (ADS)

Van Kranendonk, M. J.

2012-04-01

Over 4.5 billion years, Earth has evolved from a molten ball to a cooler planet with large continental plates, but how and when continents grew and plate tectonics started remain poorly understood. In this paper, I review the evidence that 3.5-3.2 Ga continental nuclei of the Pilbara (Australia) and Kaapvaal (southern Africa) cratons formed as thick volcanic plateaux over hot, upwelling mantle and survived due to contemporaneous development of highly depleted, buoyant, unsubductable mantle roots. This type of crust is distinct from, but complimentary to, high-grade gneiss terranes, as exemplified by the North Atlantic Craton of West Greenland, which formed through subduction-accretion tectonics on what is envisaged as a vigorously convecting early Earth with small plates. Thus, it is proposed that two types of crust formed on early Earth, in much the same way as in modern Earth, but with distinct differences resulting from a hotter Archean mantle. Volcanic plateaux provided a variety of stable habitats for early life, including chemical nutrient rich, shallow-water hydrothermal systems and shallow marine carbonate platforms.

Evaluation of an experimental LiDAR for surveying a shallow, braided, sand-bedded river

USGS Publications Warehouse

Kinzel, P.J.; Wright, C.W.; Nelson, J.M.; Burman, A.R.

2007-01-01

Reaches of a shallow (<1.0m), braided, sand-bedded river were surveyed in 2002 and 2005 with the National Aeronautics and Space Administration's Experimental Advanced Airborne Research LiDAR (EAARL) and concurrently with conventional survey-grade, real-time kinematic, global positioning system technology. The laser pulses transmitted by the EAARL instrument and the return backscatter waveforms from exposed sand and submerged sand targets in the river were completely digitized and stored for postflight processing. The vertical mapping accuracy of the EAARL was evaluated by comparing the ellipsoidal heights computed from ranging measurements made using an EAARL terrestrial algorithm to nearby (<0.5m apart) ground-truth ellipsoidal heights. After correcting for apparent systematic bias in the surveys, the root mean square error of these heights with the terrestrial algorithm in the 2002 survey was 0.11m for the 26 measurements taken on exposed sand and 0.18m for the 59 measurements taken on submerged sand. In the 2005 survey, the root mean square error was 0.18m for 92 measurements taken on exposed sand and 0.24m for 434 measurements on submerged sand. In submerged areas the waveforms were complicated by reflections from the surface, water column entrained turbidity, and potentially the riverbed. When applied to these waveforms, especially in depths greater than 0.4m, the terrestrial algorithm calculated the range above the riverbed. A bathymetric algorithm has been developed to approximate the position of the riverbed in these convolved waveforms and preliminary results are encouraging. ?? 2007 ASCE.

Hydrologic regulation of plant rooting depth

PubMed Central

Miguez-Macho, Gonzalo; Jobbágy, Esteban G.; Jackson, Robert B.; Otero-Casal, Carlos

2017-01-01

Plant rooting depth affects ecosystem resilience to environmental stress such as drought. Deep roots connect deep soil/groundwater to the atmosphere, thus influencing the hydrologic cycle and climate. Deep roots enhance bedrock weathering, thus regulating the long-term carbon cycle. However, we know little about how deep roots go and why. Here, we present a global synthesis of 2,200 root observations of >1,000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients. Results reveal strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow, avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to the groundwater capillary fringe. This framework explains the contrasting rooting depths observed under the same climate for the same species but at distinct topographic positions. We assess the global significance of these hydrologic mechanisms by estimating root water-uptake depths using an inverse model, based on observed productivity and atmosphere, at 30″ (∼1-km) global grids to capture the topography critical to soil hydrology. The resulting patterns of plant rooting depth bear a strong topographic and hydrologic signature at landscape to global scales. They underscore a fundamental plant–water feedback pathway that may be critical to understanding plant-mediated global change. PMID:28923923

Hydrologic regulation of plant rooting depth.

PubMed

Fan, Ying; Miguez-Macho, Gonzalo; Jobbágy, Esteban G; Jackson, Robert B; Otero-Casal, Carlos

2017-10-03

Plant rooting depth affects ecosystem resilience to environmental stress such as drought. Deep roots connect deep soil/groundwater to the atmosphere, thus influencing the hydrologic cycle and climate. Deep roots enhance bedrock weathering, thus regulating the long-term carbon cycle. However, we know little about how deep roots go and why. Here, we present a global synthesis of 2,200 root observations of >1,000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients. Results reveal strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow, avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to the groundwater capillary fringe. This framework explains the contrasting rooting depths observed under the same climate for the same species but at distinct topographic positions. We assess the global significance of these hydrologic mechanisms by estimating root water-uptake depths using an inverse model, based on observed productivity and atmosphere, at 30″ (∼1-km) global grids to capture the topography critical to soil hydrology. The resulting patterns of plant rooting depth bear a strong topographic and hydrologic signature at landscape to global scales. They underscore a fundamental plant-water feedback pathway that may be critical to understanding plant-mediated global change.

Hydrologic regulation of plant rooting depth

NASA Astrophysics Data System (ADS)

Fan, Ying; Miguez-Macho, Gonzalo; Jobbágy, Esteban G.; Jackson, Robert B.; Otero-Casal, Carlos

2017-10-01

Plant rooting depth affects ecosystem resilience to environmental stress such as drought. Deep roots connect deep soil/groundwater to the atmosphere, thus influencing the hydrologic cycle and climate. Deep roots enhance bedrock weathering, thus regulating the long-term carbon cycle. However, we know little about how deep roots go and why. Here, we present a global synthesis of 2,200 root observations of >1,000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients. Results reveal strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow, avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to the groundwater capillary fringe. This framework explains the contrasting rooting depths observed under the same climate for the same species but at distinct topographic positions. We assess the global significance of these hydrologic mechanisms by estimating root water-uptake depths using an inverse model, based on observed productivity and atmosphere, at 30″ (˜1-km) global grids to capture the topography critical to soil hydrology. The resulting patterns of plant rooting depth bear a strong topographic and hydrologic signature at landscape to global scales. They underscore a fundamental plant-water feedback pathway that may be critical to understanding plant-mediated global change.

First record of plicidentine in Synapsida and patterns of tooth root shape change in Early Permian sphenacodontians.

PubMed

Brink, Kirstin S; LeBlanc, Aaron R H; Reisz, Robert R

2014-11-01

Recent histological studies have revealed a diversity of dental features in Permo-Carboniferous tetrapods. Here, we report on the occurrence of plicidentine (infolded dentine around the base of the tooth root) in Sphenacodontia, the first such documentation in Synapsida, the clade that includes mammals. Five taxa were examined histologically, Ianthodon schultzei, Sphenacodon ferocior, Dimetrodon limbatus, Dimetrodon grandis, and Secodontosaurus obtusidens. The tooth roots of Ianthodon possess multiple folds, which is generally viewed as the primitive condition for amniotes. Sphenacodon and D. limbatus have distinctive "four-leaf clover"-shaped roots in cross section, whereas Secodontosaurus has an elongate square shape with only subtle folding. The most derived and largest taxon examined in this study, D. grandis, has rounded roots in cross section and therefore no plicidentine. This pattern of a loss of plicidentine in sphenacodontids supports previous functional hypotheses of plicidentine, where teeth with shallow roots require folds to increase the area of attachment to the tooth-bearing element, whereas teeth with long roots do not. This pattern may also reflect differences in diet between co-occurring sphenacodontids as well as changes in feeding niche through time, specifically in the apex predator Dimetrodon.

Nitrogen fluxes through unsaturated zones in five agricultural settings across the USA

NASA Astrophysics Data System (ADS)

Green, C. T.; Fisher, L. H.; Bekins, B. A.

2006-12-01

The main controls on nitrogen (N) fluxes between the root zone and the water table were determined for agricultural sites in California, Washington, Nebraska, Indiana, and Maryland in 2004 and 2005. Sites included irrigated and non-irrigated fields; soil textures ranging from clay to sand; crops including corn, soybeans, almonds, and pasture; and unsaturated zone thicknesses ranging from 0.5 to 20 m. Chemical analyses of water from lysimeters, shallow wells, and sediment cores indicate that advective transport of nitrate is the dominant process affecting the rate of N transport below the root zone. Vertical profiles of (1) N species, (2) stable N and O isotopes, and (3) oxygen gas in unsaturated zone air and shallow ground water, and correlations between N and other agricultural chemicals indicate that reactions do not greatly affect N concentrations between the root zone and the capillary fringe. Relatively stable concentrations at depths greater than a few meters allow calculation of nitrogen fluxes to the saturated zone. These fluxes are equivalent to 14 - 64% of the N application rates. At the same locations, median vertical fluxes of N in ground water are generally lower, ranging from 4 - 37% of N application rates. The lower nitrate fluxes in ground water reflect processes including lateral flow to tile drains and denitrification in the capillary fringe, as well as historical changes in N inputs.

Simulations of tremor-related creep reveal a weak crustal root of the San Andreas Fault

USGS Publications Warehouse

Shelly, David R.; Bradley, Andrew M.; Johnson, Kaj M.

2013-01-01

Deep aseismic roots of faults play a critical role in transferring tectonic loads to shallower, brittle crustal faults that rupture in large earthquakes. Yet, until the recent discovery of deep tremor and creep, direct inference of the physical properties of lower-crustal fault roots has remained elusive. Observations of tremor near Parkfield, CA provide the first evidence for present-day localized slip on the deep extension of the San Andreas Fault and triggered transient creep events. We develop numerical simulations of fault slip to show that the spatiotemporal evolution of triggered tremor near Parkfield is consistent with triggered fault creep governed by laboratory-derived friction laws between depths of 20–35 km on the fault. Simulated creep and observed tremor northwest of Parkfield nearly ceased for 20–30 days in response to small coseismic stress changes of order 104 Pa from the 2003 M6.5 San Simeon Earthquake. Simulated afterslip and observed tremor following the 2004 M6.0 Parkfield earthquake show a coseismically induced pulse of rapid creep and tremor lasting for 1 day followed by a longer 30 day period of sustained accelerated rates due to propagation of shallow afterslip into the lower crust. These creep responses require very low effective normal stress of ~1 MPa on the deep San Andreas Fault and near-neutral-stability frictional properties expected for gabbroic lower-crustal rock.

Powerful Reforms with Shallow Roots: Improving America's Urban Schools.

ERIC Educational Resources Information Center

Cuban, Larry, Ed.; Usdan, Michael, Ed.

This collection of papers, purposely written in jargon-free language, is designed to inform policymakers, business leaders, educators, and civic-minded parents about the abiding complexities of urban school reform and the linkages between the success of schools and the vitality of cities. After the "Introduction: Learning from the Past"…

PHYTOREMEDIATION OF GROUNDWATER AT AIR FORCE PLANT 4, CARSWELL, TEXAS - INNOVATIVE TECHNOLOGY EVALUATION REPORT (CD-ROM)

EPA Science Inventory

Over 600 Cottonwood trees were planted over a shallow groundwater plume in an attempt to detoxify the tricWoroethylene (TCE) in a groundwater plume at a former Air Force facility. Two planting techniques were used: rooted stock about two years old, and 18 inch cuttings were insta...

PHYTOREMEDIATION OF GROUNDWATER AT AIR FORCE PLANT 4, CARSWELL, TEXAS - INNOVATIVE TECHNOLOGY EVALUATION REPORT

EPA Science Inventory

Over 600 Cottonwood trees were planted over a shallow groundwater plume in an attempt to detoxify the trichloroethylene (TCE) in a groundwater plume at a former Air Force facility. Two planting techniques were used: rooted stock about two years old, and 18 inch cuttings were inst...

Hydraulic redistribution by two semi-arid shrub species: implications for Sahelian agro-ecosystems

Treesearch

F. Kizito; M.I. Dragila; M. Sene; J.R. Brooks; F.C. Meinzer; I. Diedhiou; M. Diouf; A. Lufafa; R.P. Dick; J. Selker; R. Cuenca

2012-01-01

Hydraulic redistribution is the process of passive water movement from deeper moist soil to shallower dry soil layers using plant roots as conduits. Results from this study indicate that this phenomenon exists among two shrub species (Guiera senegalensis and Piliostigma reticulatum) that co-exist with annual food crops in...

On Violence in History: A Tale of One City and Two Thomases.

ERIC Educational Resources Information Center

Scott, John Anthony

1986-01-01

Through the literary device of a dialogue, this article urges teachers to address the root causes of international and state terrorism, which it identifies as the quest for political power. Condemns the shallow analysis of both major and minor wars offered in typical textbooks and high school social studies classes. (JDH)

Thermal and visible remote sensing for estimation of evapotranspiration of rainfed agrosystems and its impact on groundwater in SE Australia

NASA Astrophysics Data System (ADS)

Roohi, Rakhshan; Webb, John A.

2016-05-01

Rainfed agrosystems are important components of the world's food production system and account for 65-95% of total agriculture. In contrast to irrigated production systems, relatively little attention has been paid to understanding the hydrological interactions between the components of rainfed agrosystems and their impact on water resources, especially groundwater. A new model, the Surface Energy Balance Algorithm for Rainfed Agriculture (SEBARA), has been developed to estimate the spatial pattern of evapotranspiration in these agrosystems using satellite images (thermal, infrared and visible spectra). The model was calibrated for two competing land uses (Eucalyptus globules tree plantations and pastures) in adjacent catchments in western Victoria, southeastern Australia. Using measurements from a flux tower in the pasture catchment and adjusted sapflow measurements in the plantation catchment, an estimation accuracy of 95% was achieved. The tree plantations had higher available net radiation, lower soil heat flux and higher latent heat flux, resulting in 15-20% higher evapotranspirative demand than the pasture, depending upon the age and canopy of plantations. The evapotranspiration rate of plantations declines where groundwater depth is >12m or where shallow groundwater is saline. The shallow root system of the pasture means that it relies solely on soil moisture to meet its water requirements and thus has lower evapotranspiration, which varies according to the pasture species.

SOSlope: a new slope stability model for vegetated hillslopes

NASA Astrophysics Data System (ADS)

Cohen, D.; Schwarz, M.

2016-12-01

Roots contribute to increase soil strength but forces mobilized by roots depend on soil relative displacement. This effect is not included in models of slope stability. Here we present a new numerical model of shallow landslides for vegetated hillslopes that uses a strain-step loading approach for force redistributions within a soil mass including the effects of root strength in both tension and compression. The hillslope is discretized into a two-dimensional array of blocks connected by bonds. During a rainfall event the blocks's mass increases and the soil shear strength decreases. At each time step, we compute a factor of safety for each block. If the factor of safety of one or more blocks is less than one, those blocks are moved in the direction of the local active force by a predefined amount and the factor of safety is recalculated for all blocks. Because of the relative motion between blocks that have moved and those that remain stationary, mechanical bond forces between blocks that depend on relative displacement change, modifying the force balance. This relative motion triggers instantaneous force redistributions across the entire hillslope similar to a self-organized critical system. Looping over blocks and moving those that are unstable is repeated until all blocks are stable and the system reaches a new equilibrium, or, some blocks have failed causing a landslide. Spatial heterogeneity of vegetation is included by computing the root density and distribution as a function of distance form trees. A simple subsurface hydrological model based on dual permeability concepts is used to compute the temporal evolution of water content, pore-water pressure, suction stress, and soil shear strength. Simulations for a conceptual slope indicates that forces mobilized in tension and compression both contribute to the stability of the slope. However, the maximum tensional and compressional forces imparted by roots do not contribute simultaneously to the stability of the soil mass, in contrast to what is commonly assumed in models. Simulations with different tree sizes (different magnitude of root reinforcement) indicate that there is a threshold in tree spacing (or tree diameter) above (or below) which root density and root sizes no longer provide sufficient reinforcement to keep the slope stable during a rainfall event.

Bathymetric mapping of shallow water surrounding Dongsha Island using QuickBird image

NASA Astrophysics Data System (ADS)

Li, Dongling; Zhang, Huaguo; Lou, Xiulin

2018-03-01

This article presents an experiment of water depth inversion using the band ratio method in Dongsha Island shallow water. The remote sensing data is from QuickBird satellite on April 19, 2004. The bathymetry result shows an extensive agreement with the charted depths. 129 points from the chart depth data were chosen to evaluate the accuracy of the inversion depth. The results show that when the water depth is less than 20m, the inversion depth is accord with the chart, while the water depth is more than 20m, the inversion depth is still among 15- 25m. Therefore, the remote sensing methods can only be effective with the inversion of 20m in Dongsha Island shallow water, rather than in deep water area. The total of 109 depth points less than 20m were used to evaluate the accuracy, the root mean square error is 2.2m.

Biogenic and pedogenic controls on Si distributions and cycling in grasslands of the Santa Cruz soil chronosequence, California

NASA Astrophysics Data System (ADS)

White, Art F.; Vivit, Davison V.; Schulz, Marjorie S.; Bullen, Tom D.; Evett, Rand R.; Aagarwal, Jugdeep

2012-10-01

Biogenic and pedogenic processes control silica cycling in grasslands growing on a soil chronosequence and dominated by strong seasonal variabilities of a Mediterranean climate. Shallow pore water Si, in spite of significant annual uptake and release by plant growth and dieback, exhibits only moderate seasonal fluctuations reflecting strong buffering from labile biogenic Si, dominated by phytoliths and by secondary pedogenic silicates. Long phytolith residence times (340-900 yrs) reflect the seasonally dry climate and high solute Si concentrations. Water-extractable Si is closely associated with Al, indicating seasonal precipitation and dissolution of a highly labile 1:1 hydroxyaluminosilicate (HAS), probably allophane, which transforms in deeper soil into fine grained, poorly crystalline kaolinite. Shallow plant roots extract greater proportions of biogenic Si and deeper plant roots larger amounts pedogenic Si. High pore water Ge/Si in late winter and spring reflects the reinforcing effects of plant fractionation and concurrent dissolution of Ge-enriched HAS. The same processes produce pore waters with depleted 30Si/28Si. In the summer and fall, Ge/Si declines and 30Si/28Si increases, reflecting the cessation of plant uptake, continued dissolution of soil phytoliths and re-precipitation of less soluble HAS. Si inputs from weathering (2-90 mmol m-2 yr-1) and losses from pore water discharge (18-68 mM m-2 yr-1) are comparable for individual soils, decline with soil age and are significantly less than amounts of Si annual cycled through the vegetation (42-171 mM m-2 yr-1). Mobile Si is generally balanced in the soils with upward bio-pumping by the shallow-rooted grasses efficiently competing against downward leaching and pore water discharge. Small net annual increases in Si in the present day soils could not have been maintained over the time scale represented by the chronosequence (65-225 yrs), implying past changes in environmental conditions.

Geoecohydrological mechanisms couple soil and leaf water dynamics and facilitate species coexistence in shallow soils of a tropical semiarid mixed forest.

PubMed

Rodríguez-Robles, Ulises; Arredondo, J Tulio; Huber-Sannwald, Elisabeth; Vargas, Rodrigo

2015-07-01

Trees growing on shallow rocky soils must have exceptional adaptations when underlying weathered bedrock has no deep fractures for water storage. Under semiarid conditions, hydrology of shallow soils is expected to decouple from plant hydrology, as soils dry out as a result of rapid evaporation and competition for water increases between coexisting tree species. Gas exchange and plant-water relations were monitored for 15 months for Pinus cembroides and Quercus potosina tree species in a tropical semiarid forest growing on c. 20-cm-deep soils over impermeable volcanic bedrock. Soil and leaf water potential maintained a relatively constant offset throughout the year in spite of high intra-annual fluctuations reaching up to 5 MPa. Thus, hydrology of shallow soils did not decouple from hydrology of trees even in the driest period. A combination of redistribution mechanisms of water stored in weathered bedrock and hypodermic flow accessible to oak provided the source of water supply to shallow soils, where most of the actively growing roots occurred. This study demonstrates a unique geoecohydrological mechanism that maintains a tightly coupled hydrology between shallow rocky soils and trees, as well as species coexistence in this mixed forest, where oak facilitates water access to pine. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Franco, A.C.; Nobel, P.S.

Seedlings of the succulent crassulacean acid metabolism (CAM) plant Agave deserti in the northwestern Sonoran Desert were found only in sheltered microhabitats, nearly all occurring under the canopy of a desert bunchgrass, Hilaria rigida. Apparently because soil surface temperatures can reach 71{degree}C in exposed areas, seedlings were generally located near the center or on the northern side of this nurse plant. Both species have shallow root systems, about half of the roots of H. rigida and all those for seedlings of A. deserti occurring above soil depths of 0.08 m. To examine competition for water between the nurse plant andmore » an associated seedling, a three-dimensional model for root water uptake was developed. Predicted pre-dawn soil water potentials at the mean root depth and total shoot transpiration agreed well with field measurements. Simulated annual water uptake by a seedling of A. deserti was reduced {approx}50% when the seedling was moved from an exposed location to the center of the nurse plant. Shading by the nurse plant reduced total daily photosynthetically active radiation (PAR) by up to 74% compared with an exposed seedling. On the other hand, soil nitrogen under the canopy of H rigida was 60% higher than in exposed locations. Assuming that the effects of nitrogen, temperature, PAR, and soil water on net CO{sub 2} uptake are multiplicative, the predicted net CO{sub 2} uptake by a seedling of A. deserti under the nurse plant was only {approx}45% of that for an exposed seedling.« less

Diurnal and seasonal variation in root xylem embolism in neotropical savanna woody species: impact on stomatal control of plant water status.

PubMed

Domec, J C; Scholz, F G; Bucci, S J; Meinzer, F C; Goldstein, G; Villalobos-Vega, R

2006-01-01

Vulnerability to water-stress-induced embolism and variation in the degree of native embolism were measured in lateral roots of four co-occurring neotropical savanna tree species. Root embolism varied diurnally and seasonally. Late in the dry season, loss of root xylem conductivity reached 80% in the afternoon when root water potential (psi root) was about -2.6 MPa, and recovered to 25-40% loss of conductivity in the morning when psi root was about -1.0 MPa. Daily variation in psi root decreased, and root xylem vulnerability and capacitance increased with rooting depth. However, all species experienced seasonal minimum psi root close to complete hydraulic failure independent of their rooting depth or resistance to embolism. Predawn psi root was lower than psi soil when psi soil was relatively high (> -0.7 MPa) but became less negative than psi soil, later in the dry season, consistent with a transition from a disequilibrium between plant and soil psi induced by nocturnal transpiration to one induced by hydraulic redistribution of water from deeper soil layers. Shallow longitudinal root incisions external to the xylem prevented reversal of embolism overnight, suggesting that root mechanical integrity was necessary for recovery, consistent with the hypothesis that if embolism is a function of tension, refilling may be a function of internal pressure imbalances. All species shared a common relationship in which maximum daily stomatal conductance declined linearly with increasing afternoon loss of root conductivity over the course of the dry season. Daily embolism and refilling in roots is a common occurrence and thus may be an inherent component of a hydraulic signaling mechanism enabling stomata to maintain the integrity of the hydraulic pipeline in long-lived structures such as stems.

A multidimensional stability model for predicting shallow landslide size and shape across landscapes.

PubMed

Milledge, David G; Bellugi, Dino; McKean, Jim A; Densmore, Alexander L; Dietrich, William E

2014-11-01

The size of a shallow landslide is a fundamental control on both its hazard and geomorphic importance. Existing models are either unable to predict landslide size or are computationally intensive such that they cannot practically be applied across landscapes. We derive a model appropriate for natural slopes that is capable of predicting shallow landslide size but simple enough to be applied over entire watersheds. It accounts for lateral resistance by representing the forces acting on each margin of potential landslides using earth pressure theory and by representing root reinforcement as an exponential function of soil depth. We test our model's ability to predict failure of an observed landslide where the relevant parameters are well constrained by field data. The model predicts failure for the observed scar geometry and finds that larger or smaller conformal shapes are more stable. Numerical experiments demonstrate that friction on the boundaries of a potential landslide increases considerably the magnitude of lateral reinforcement, relative to that due to root cohesion alone. We find that there is a critical depth in both cohesive and cohesionless soils, resulting in a minimum size for failure, which is consistent with observed size-frequency distributions. Furthermore, the differential resistance on the boundaries of a potential landslide is responsible for a critical landslide shape which is longer than it is wide, consistent with observed aspect ratios. Finally, our results show that minimum size increases as approximately the square of failure surface depth, consistent with observed landslide depth-area data.

A multidimensional stability model for predicting shallow landslide size and shape across landscapes

PubMed Central

Milledge, David G; Bellugi, Dino; McKean, Jim A; Densmore, Alexander L; Dietrich, William E

2014-01-01

The size of a shallow landslide is a fundamental control on both its hazard and geomorphic importance. Existing models are either unable to predict landslide size or are computationally intensive such that they cannot practically be applied across landscapes. We derive a model appropriate for natural slopes that is capable of predicting shallow landslide size but simple enough to be applied over entire watersheds. It accounts for lateral resistance by representing the forces acting on each margin of potential landslides using earth pressure theory and by representing root reinforcement as an exponential function of soil depth. We test our model's ability to predict failure of an observed landslide where the relevant parameters are well constrained by field data. The model predicts failure for the observed scar geometry and finds that larger or smaller conformal shapes are more stable. Numerical experiments demonstrate that friction on the boundaries of a potential landslide increases considerably the magnitude of lateral reinforcement, relative to that due to root cohesion alone. We find that there is a critical depth in both cohesive and cohesionless soils, resulting in a minimum size for failure, which is consistent with observed size-frequency distributions. Furthermore, the differential resistance on the boundaries of a potential landslide is responsible for a critical landslide shape which is longer than it is wide, consistent with observed aspect ratios. Finally, our results show that minimum size increases as approximately the square of failure surface depth, consistent with observed landslide depth-area data. PMID:26213663

Effects of hydromechanical loading history and antecedent soil mechanical damage on shallow landslide triggering

NASA Astrophysics Data System (ADS)

Fan, Linfeng; Lehmann, Peter; Or, Dani

2015-10-01

Evidence suggests that the sudden triggering of rainfall-induced shallow landslides is preceded by accumulation of local internal failures in the soil mantle before their abrupt coalescence into a landslide failure plane. The mechanical status of a hillslope at any given time reflects competition between local damage accumulated during antecedent rainfall events and rates of mechanical healing (e.g., rebonding of microcracks and root regrowth). This dynamic interplay between damage accumulation and healing rates determines the initial mechanical state for landslide modeling. We evaluated the roles of these dynamic processes on landslide characteristics and patterns using a hydromechanical landslide-triggering model for a sequence of rainfall scenarios. The progressive nature of soil failure was represented by the fiber bundle model formalism that considers threshold strength of mechanical bonds linking adjacent soil columns and bedrock. The antecedent damage induced by prior rainfall events was expressed by the fraction of broken fibers that gradually regain strength or mechanically heal at rates specific to soil and roots. Results indicate that antecedent damage accelerates landslide initiation relative to pristine (undamaged) hillslopes. The volumes of first triggered landslides increase with increasing antecedent damage; however, for heavily damaged hillslopes, landslide volumes tend to decrease. Elapsed time between rainfall events allows mechanical healing that reduces the effects of antecedent damage. This study proposed a quantitative framework for systematically incorporating hydromechanical loading history and information on precursor events (e.g., such as recorded by acoustic emissions) into shallow landslide hazard assessment.

Magmatic architecture within a rift segment: Articulate axial magma storage at Erta Ale volcano, Ethiopia

NASA Astrophysics Data System (ADS)

Xu, Wenbin; Rivalta, Eleonora; Li, Xing

2017-10-01

Understanding the magmatic systems beneath rift volcanoes provides insights into the deeper processes associated with rift architecture and development. At the slow spreading Erta Ale segment (Afar, Ethiopia) transition from continental rifting to seafloor spreading is ongoing on land. A lava lake has been documented since the twentieth century at the summit of the Erta Ale volcano and acts as an indicator of the pressure of its magma reservoir. However, the structure of the plumbing system of the volcano feeding such persistent active lava lake and the mechanisms controlling the architecture of magma storage remain unclear. Here, we combine high-resolution satellite optical imagery and radar interferometry (InSAR) to infer the shape, location and orientation of the conduits feeding the 2017 Erta Ale eruption. We show that the lava lake was rooted in a vertical dike-shaped reservoir that had been inflating prior to the eruption. The magma was subsequently transferred into a shallower feeder dike. We also find a shallow, horizontal magma lens elongated along axis inflating beneath the volcano during the later period of the eruption. Edifice stress modeling suggests the hydraulically connected system of horizontal and vertical thin magmatic bodies able to open and close are arranged spatially according to stresses induced by loading and unloading due to topographic changes. Our combined approach may provide new constraints on the organization of magma plumbing systems beneath volcanoes in continental and marine settings.

Integrating the effects of forest cover on slope stability in a deterministic landslide susceptibility model (TRIGRS 2.0)

NASA Astrophysics Data System (ADS)

Zieher, T.; Rutzinger, M.; Bremer, M.; Meissl, G.; Geitner, C.

2014-12-01

The potentially stabilizing effects of forest cover in respect of slope stability have been the subject of many studies in the recent past. Hence, the effects of trees are also considered in many deterministic landslide susceptibility models. TRIGRS 2.0 (Transient Rainfall Infiltration and Grid-Based Regional Slope-Stability; USGS) is a dynamic, physically-based model designed to estimate shallow landslide susceptibility in space and time. In the original version the effects of forest cover are not considered. As for further studies in Vorarlberg (Austria) TRIGRS 2.0 is intended to be applied in selected catchments that are densely forested, the effects of trees on slope stability were implemented in the model. Besides hydrological impacts such as interception or transpiration by tree canopies and stems, root cohesion directly influences the stability of slopes especially in case of shallow landslides while the additional weight superimposed by trees is of minor relevance. Detailed data on tree positions and further attributes such as tree height and diameter at breast height were derived throughout the study area (52 km²) from high-resolution airborne laser scanning data. Different scenarios were computed for spruce (Picea abies) in the study area. Root cohesion was estimated area-wide based on published correlations between root reinforcement and distance to tree stems depending on the stem diameter at breast height. In order to account for decreasing root cohesion with depth an exponential distribution was assumed and implemented in the model. Preliminary modelling results show that forest cover can have positive effects on slope stability yet strongly depending on tree age and stand structure. This work has been conducted within C3S-ISLS, which is funded by the Austrian Climate and Energy Fund, 5th ACRP Program.

Post-fire geomorphic response in steep, forested landscapes: Oregon Coast Range, USA

NASA Astrophysics Data System (ADS)

Jackson, Molly; Roering, Joshua J.

2009-06-01

The role of fire in shaping steep, forested landscapes depends on a suite of hydrologic, biologic, and geological characteristics, including the propensity for hydrophobic soil layers to promote runoff erosion during subsequent rainfall events. In the Oregon Coast Range, several studies postulate that fire primarily modulates sediment production via root reinforcement and shallow landslide susceptibility, although few studies have documented post-fire geomorphic response. Here, we describe field observations and topographic analyses for three sites in the central Oregon Coast Range that burned in 1999, 2002, and 2003. The fires generated strongly hydrophobic soil layers that did not promote runoff erosion because the continuity of the layers was interrupted by pervasive discontinuities that facilitated rapid infiltration. At each of our sites, fire generated significant colluvial transport via dry ravel, consistent with other field-based studies in the western United States. Fire-driven dry ravel accumulation in low-order valleys of our Sulphur Creek site equated to a slope-averaged landscape lowering of 2.5 mm. Given Holocene estimates of fire frequency, these results suggest that fire may contribute 10-20% of total denudation across steep, dissected portions of the Oregon Coast Range. In addition, we documented more rapid decline of root strength at our sites than has been observed after timber harvest, suggesting that root strength was compromised prior to fire or that intense heat damaged roots in the shallow subsurface. Given that fire frequencies in the Pacific Northwest are predicted to increase with continued climate change, our findings highlight the importance of fire-induced dry ravel and post-fire debris flow activity in controlling sediment delivery to channels.

Aggregate stability, root length and root thickness influenced by a mycorrhizal inoculum? - Results from a three-year eco-engineering field experiment on an alpine slope.

NASA Astrophysics Data System (ADS)

Bast, Alexander; Wilcke, Wolfgang; Lüscher, Peter; Graf, Frank; Gärtner, Holger

2014-05-01

In mountain environments many slopes are covered by coarse grained, glacial-, periglacial- or/and denudation-derived substrate. These slopes show a high geomorphic activity and are susceptible for erosional processes, shallow landslides or debris flows, which can result in a high socio-economic hazard potential. This is especially true for steep slopes, lacking a protecting vegetation cover. Regarding hazard prevention, eco-engineering gained in importance because related techniques provide a sustainable measure to protect erosion-prone hillslopes. The idea of using plants for sustainable erosion control and protection against shallow landslides, demands some essential requirements, as e.g., a stable seedbed providing appropriate water and nutrient supply. However, degraded alpine slopes are often unstable and the coarse-grained material shows a low retention capacity of water and nutrients. Extreme conditions like this hamper a fast and sustainable development of a protecting vegetation cover even if pioneer plants are used to stabilize the slopes. Thus, the question arises what needs to be done to give planted saplings within eco-engineering projects maximum support developing their above- and belowground structures to promote slope stabilization. Laboratory experiments using potted plants have shown a positive impact of mycorrhizal fungi inoculation plant development and soil structure, i.e. the formation of (stable) aggregates within several months. Soil aggregate stability is an integrating parameter, reflecting several aspects of the plant-soil system and for this also an indicator of soil development and soil stability. Because of this and based on the promising laboratory results, we intended to apply this approach in a field-experiment We established (i) mycorrhizal and (ii) non-mycorrhizal treated eco-engineered research plots on a field experimental scale, covering a total area of approx. 1000 m2 on an ENE exposed slope (coarse morainic and denudation-derived substrate; inclination ~40 - 45 °; elevation 1220 - 1360 m a.s.l.) located in the Eastern Swiss Alps, where many environmental parameters can be seen as homogeneous. Soil aggregate stability, the formation of water stable aggregates and the fine-root development was quantified at the end of three consecutively vegetation periods. Our results show, that an impact of the mycorrhizal inoculum on aggregate stability was not traceable after one vegetation period, which contradicts our expectations and former laboratory experiments. At the mycorrhizal inoculated site, fine roots showed indeed a lower root length density compared to the non-mycorrhizal treated site, but the proportion of roots with thicker diameters tended to be higher. At the end of the third vegetation period this pattern changed. Aggregate stability is then highest at the inoculated site and root length density increased showing the highest values as well. The tendency to thicker root diameters at the mycorrhizal treated site can be confirmed. Our findings show that studies on a field experimental scale are inevitable. Laboratory experiments and field studies complement each other, and lead to a better understanding, having regard to a successful application of sustainable eco-engineering measures on erosion-prone slopes in alpine environments.

Using Rain Gardens to Promote Service Learning and Climate Science Education with Urban Youth

ERIC Educational Resources Information Center

Kinsey, Sharon B.; Haberland, Michael W.

2012-01-01

The Jersey Roots, Global Reach 4-H Climate Science Program conducted in Camden, New Jersey introduces middle school students to the evidence, impacts, and potential solutions to climate change. For their service learning project, students installed two rain gardens at the school. Rain gardens are shallow landscaped depressions in the soil that can…

Soil-water content characterisation in a modified Jarvis-Stewart model: A case study of a conifer forest on a shallow unconfined aquifer

NASA Astrophysics Data System (ADS)

Guyot, Adrien; Fan, Junliang; Oestergaard, Kasper T.; Whitley, Rhys; Gibbes, Badin; Arsac, Margaux; Lockington, David A.

2017-01-01

Groundwater-vegetation-atmosphere fluxes were monitored for a subtropical coastal conifer forest in South-East Queensland, Australia. Observations were used to quantify seasonal changes in transpiration rates with respect to temporal fluctuations of the local water table depth. The applicability of a Modified Jarvis-Stewart transpiration model (MJS), which requires soil-water content data, was assessed for this system. The influence of single depth values compared to use of vertically averaged soil-water content data on MJS-modelled transpiration was assessed over both a wet and a dry season, where the water table depth varied from the surface to a depth of 1.4 m below the surface. Data for tree transpiration rates relative to water table depth showed that trees transpire when the water table was above a threshold depth of 0.8 m below the ground surface (water availability is non-limiting). When the water table reached the ground surface (i.e., surface flooding) transpiration was found to be limited. When the water table is below this threshold depth, a linear relationship between water table depth and the transpiration rate was observed. MJS modelling results show that the influence of different choices for soil-water content on transpiration predictions was insignificant in the wet season. However, during the dry season, inclusion of deeper soil-water content data improved the model performance (except for days after isolated rainfall events, here a shallower soil-water representation was better). This study demonstrated that, to improve MJS simulation results, appropriate selection of soil water measurement depths based on the dynamic behaviour of soil water profiles through the root zone was required in a shallow unconfined aquifer system.

Microsurgical removal of epidermal and cortical cells: evidence that the gravitropic signal moves through the outer cell layers in primary roots of maize

NASA Technical Reports Server (NTRS)

Yang, R. L.; Evans, M. L.; Moore, R.

1990-01-01

There is general agreement that during root gravitropism some sort of growth-modifying signal moves from the cap to the elongation zone and that this signal ultimately induces the curvature that leads to reorientation of the root. However, there is disagreement regarding both the nature of the signal and the pathway of its movement from the root cap to the elongation zone. We examined the pathway of movement by testing gravitropism in primary roots of maize (Zea mays L.) from which narrow (0.5 mm) rings of epidermal and cortical tissue were surgically removed from various positions within the elongation zone. When roots were girdled in the apical part of the elongation zone gravitropic curvature occurred apical to the girdle but not basal to the girdle. Filling the girdle with agar allowed curvature basal to the girdle to occur. Shallow girdles, in which only two or three cell layers (epidermis plus one or two cortical cell layers) were removed, prevented or greatly delayed gravitropic curvature basal to the girdle. The results indicate that the gravitropic signal moves basipetally through the outermost cell layers, perhaps through the epidermis itself.

Root growth regulation and gravitropism in maize roots does not require the epidermis

NASA Technical Reports Server (NTRS)

Bjorkman, T.; Cleland, R. E.

1991-01-01

We have earlier published observations showing that endogenous alterations in growth rate during gravitropism in maize roots (Zea mays L.) are unaffected by the orientation of cuts which remove epidermal and cortical tissue in the growing zone (Bjorkman and Cleland, 1988, Planta 176, 513-518). We concluded that the epidermis and cortex are not essential for transporting a growth-regulating signal in gravitropism or straight growth, nor for regulating the rate of tissue expansion. This conclusion has been challenged by Yang et al. (1990, Planta 180, 530-536), who contend that a shallow girdle around the entire perimeter of the root blocks gravitropic curvature and that this inhibition is the result of a requirement for epidermal cells to transport the growth-regulating signal. In this paper we demonstrate that the entire epidermis can be removed without blocking gravitropic curvature and show that the position of narrow girdles does not affect the location of curvature. We therefore conclude that the epidermis is not required for transport of a growth-regulating substance from the root cap to the growing zone, nor does it regulate the growth rate of the elongating zone of roots.

Characterizing hydrology and the importance of ground-water discharge in natural and constructed wetlands

USGS Publications Warehouse

Hunt, Randall J.; Walker, John F.; Krabbenhoft, David P.

1999-01-01

Although considered the most important component for the establishment and persistence of wetlands, hydrology has been hard to characterize and linkages between hydrology and other environmental conditions are often poorly understood. In this work, methods for characterizing a wetland’s hydrology from hydrographs were developed, and the importance of ground water to the physical and geochemical conditions in the root zone was investigated. Detailed sampling of nearly continuous hydrographs showed that sites with greater ground-water discharge had higher water tables and more stable hydrographs. Subsampling of the continuous hydrograph failed to characterize the sites correctly, even though the wetland complex is located in a strong regional ground-water-discharge area. By comparing soil-moisture-potential measurements to the water-table hydrograph at one site, we noted that the amount of root-zone saturation was not necessarily driven by the water-table hydrograph but can be a result of other soil parameters (i.e., soil texture and associated capillary fringe). Ground-water discharge was not a significant determinant of maximum or average temperatures in the root zone. High ground-water discharge was associated with earliest date of thaw and shortest period of time that the root zone was frozen, however. Finally, the direction and magnitude of shallow ground-water flow was found to affect the migration and importance of a geochemical species. Areas of higher ground-water discharge had less downward penetration of CO2 generated in the root zone. In contrast, biotically derived CO2 was able to penetrate the deeper ground-water system in areas of ground-water recharge. Although ground-water flows are difficult to characterize, understanding these components is critical to the success of wetland restoration and creation efforts.

Mustard catch crop enhances denitrification in shallow groundwater beneath a spring barley field.

PubMed

Jahangir, M M R; Minet, E P; Johnston, P; Premrov, A; Coxon, C E; Hackett, R; Richards, K G

2014-05-01

Over-winter green cover crops have been reported to increase dissolved organic carbon (DOC) concentrations in groundwater, which can be used as an energy source for denitrifiers. This study investigates the impact of a mustard catch crop on in situ denitrification and nitrous oxide (N2O) emissions from an aquifer overlain by arable land. Denitrification rates and N2O-N/(N2O-N+N2-N) mole fractions were measured in situ with a push-pull method in shallow groundwater under a spring barley system in experimental plots with and without a mustard cover crop. The results suggest that a mustard cover crop could substantially enhance reduction of groundwater nitrate NO3--N via denitrification without significantly increasing N2O emissions. Mean total denitrification (TDN) rates below mustard cover crop and no cover crop were 7.61 and 0.002 μg kg(-1) d(-1), respectively. Estimated N2O-N/(N2O-N+N2-N) ratios, being 0.001 and 1.0 below mustard cover crop and no cover crop respectively, indicate that denitrification below mustard cover crop reduces N2O to N2, unlike the plot with no cover crop. The observed enhanced denitrification under the mustard cover crop may result from the higher groundwater DOC under mustard cover crop (1.53 mg L(-1)) than no cover crop (0.90 mg L(-1)) being added by the root exudates and root masses of mustard. This study gives insights into the missing piece in agricultural nitrogen (N) balance and groundwater derived N2O emissions under arable land and thus helps minimise the uncertainty in agricultural N and N2O-N balances. Copyright © 2013 Elsevier Ltd. All rights reserved.

Phreatophyte influence on reductive dechlorination in a shallow aquifer contaminated with trichloroethene (TCE)

USGS Publications Warehouse

Lee, R.W.; Jones, S.A.; Kuniansky, E.L.; Harvey, G.; Lollar, B.S.; Slater, G.F.

2000-01-01

Phytoremediation uses the natural ability of plants to degrade contaminants in groundwater. A field demonstration designed to remediate aerobic shallow groundwater contaminated with trichloroethene began in April 1996 with the planting of cottonwood trees, a short-rotation woody crop, over an approximately 0.2-ha area at the Naval Air Station, Fort Worth, Texas. The project was developed to demonstrate capture of contaminated groundwater and degradation of contaminants by phreatophytes. Analyses from samples of groundwater collected from July 1997 to June 1998 indicate that tree roots have the potential to create anaerobic conditions in the groundwater that will facilitate degradation of trichloroethene by microbially mediated reductive dechlorination. Organic matter from root exudates and decay of tree roots probably stimulate microbial activity, consuming dissolved oxygen. Dissolved oxygen concentrations, which varied across the site, were smallest near a mature cottonwood tree (about 20 years of age and 60 meters southwest of the cottonwood plantings) where degradation products of trichloroethene were measured. Oxidation of organic matter is the primary microbially mediated reaction occurring in the groundwater beneath the planted trees whereas near the mature cottonwood tree, data indicate that methanogenesis is the most probable reaction occurring. Reductive dechlorination in groundwater either is not occurring or is not a primary process away from the mature tree. Carbon-13 isotope values for trichloroethene are nearly identical at locations away from the mature tree, further confirming that dechlorination is not occurring at the site.

Minimalistic models of the vertical distribution of roots under stochastic hydrological forcing

NASA Astrophysics Data System (ADS)

Laio, Francesco

2014-05-01

The assessment of the vertical root profile can be useful for multiple purposes: the partition of water fluxes between evaporation and transpiration, the evaluation of root soil reinforcement for bioengineering applications, the influence of roots on biogeochemical and microbial processes in the soil, etc. In water-controlled ecosystems the shape of the root profile is mainly determined by the soil moisture availability at different depths. The long term soil water balance in the root zone can be assessed by modeling the stochastic incoming and outgoing water fluxes, influenced by the stochastic rainfall pulses and/or by the water table fluctuations. Through an ecohydrological analysis one obtains that in water-controlled ecosystems the vertical root distribution is a decreasing function with depth, whose parameters depend on pedologic and climatic factors. The model can be extended to suitably account for the influence of the water table fluctuations, when the water table is shallow enough to exert an influence on root development, in which case the vertical root distribution tends to assume a non-monotonic form. In order to evaluate the validity of the ecohydrological estimation of the root profile we have tested it on a case study in the north of Tuscany (Italy). We have analyzed data from 17 landslide-prone sites: in each of these sites we have assessed the pedologic and climatic descriptors necessary to apply the model, and we have measured the mean rooting depth. The results show a quite good matching between observed and modeled mean root depths. The merit of this minimalistic approach to the modeling of the vertical root distribution relies on the fact that it allows a quantitative estimation of the main features of the vertical root distribution without resorting to time- and money-demanding measuring surveys.

Assessment of grass root effects on soil piping in sandy soils using the pinhole test

NASA Astrophysics Data System (ADS)

Bernatek-Jakiel, Anita; Vannoppen, Wouter; Poesen, Jean

2017-10-01

Soil piping is an important land degradation process that occurs in a wide range of environments. Despite an increasing number of studies on this type of subsurface erosion, the impact of vegetation on piping erosion is still unclear. It can be hypothesized that vegetation, and in particular plant roots, may reduce piping susceptibility of soils because roots of vegetation also control concentrated flow erosion rates or shallow mass movements. Therefore, this paper aims to assess the impact of grass roots on piping erosion susceptibility of a sandy soil. The pinhole test was used as it provides quantitative data on pipeflow discharge, sediment concentration and sediment discharge. Tests were conducted at different hydraulic heads (i.e., 50 mm, 180 mm, 380 mm and 1020 mm). Results showed that the hydraulic head was positively correlated with pipeflow discharge, sediment concentration and sediment discharge, while the presence of grass roots (expressed as root density) was negatively correlated with these pipeflow characteristics. Smaller sediment concentrations and sediment discharges were observed in root-permeated samples compared to root-free samples. When root density exceeds 0.5 kg m- 3, piping erosion rates decreased by 50% compared to root-free soil samples. Moreover, if grass roots are present, the positive correlation between hydraulic head and both sediment discharge and sediment concentration is less pronounced, demonstrating that grass roots become more effective in reducing piping erosion rates at larger hydraulic heads. Overall, this study demonstrates that grass roots are quite efficient in reducing piping erosion rates in sandy soils, even at high hydraulic head (> 1 m). As such, grass roots may therefore be used to efficiently control piping erosion rates in topsoils.

Tritium Plume Dynamics in the Shallow Unsaturated Zone Adjacent to an Arid Waste Disposal Facility

NASA Astrophysics Data System (ADS)

Maples, S.; Andraski, B. J.; Stonestrom, D. A.; Cooper, C. A.; Michel, R. L.; Pohll, G. M.

2012-12-01

Previous studies at the U.S. Geological Survey's Amargosa Desert Research Site (ADRS) in southern Nevada have documented two plumes of tritiated water-vapor (3HHOg) adjacent to a closed, commercial low-level radioactive waste disposal facility. Wastes were disposed on-site from 1962-92. Tritium has moved long distances (> 400 m) through a shallow (1-2-m depth) dry gravelly layer—orders of magnitude further than anticipated by standard transport models. Geostatistical methods, spatial moment analyses and tritium flux calculations were applied to assess shallow plume dynamics. A grid-based plant-water sampling method was utilized to infer detailed, field-scale 3HHOg concentrations at 5-yr intervals during 2001-11. Results indicate that gravel-layer 3HHOg mass diminished faster than would be expected from radioactive decay (~70% in 10 yr). Both plumes exhibited center-of-mass stability, suggesting that bulk-plume movement is minimal during the period of study. Nonetheless, evidence of localized lateral advancement along some margins, combined with increases in the spatial covariance of concentration distribution, indicates intra-plume mass redistribution is ongoing. Previous studies have recognized that vertical movement of tritiated water from sub-root-zone gravel into the root-zone contributes to atmospheric release via evapotranspiration. Estimates of lateral and vertical tritium fluxes during the study period indicate (1) vertical tritiated water fluxes were dominated by diffusive-vapor fluxes (> 90%), and (2) vertical diffusive-vapor fluxes were roughly an order of magnitude greater than lateral diffusive-vapor fluxes. This behavior highlights the importance of the atmosphere as a tritium sink. Estimates of cumulative vertical diffusive-vapor flux and radioactive decay with time were comparable to observed declines in total shallow plume mass with time. This suggests observed changes in plume mass may (1) be attributed, in considerable part, to these removal mechanisms, and (2) appreciable input from the adjacent disposal facility is not occurring at this time.

Modeling the hydrological and mechanical effect of roots on shallow landslides

NASA Astrophysics Data System (ADS)

Arnone, E.; Caracciolo, D.; Noto, L. V.; Preti, F.; Bras, R. L.

2016-11-01

This study proposes a new methodology for estimating the additional shear strength (or cohesion) exerted by vegetation roots on slope stability analysis within a coupled hydrological-stability model. The mechanical root cohesion is estimated within a Fiber Bundle Model framework that allows for the evaluation of the root strength as a function of stress-strain relationships of populations of fibers. The use of such model requires the knowledge of the root architecture. A branching topology model based on Leonardo's rule is developed, providing an estimation of the amount of roots and the distribution of diameters with depth. The proposed methodology has been implemented into an existing distributed hydrological-stability model able to simulate the dynamics of factor of safety as a function of soil moisture dynamics. The model also accounts for the hydrological effects of vegetation, which reduces soil water content via root water uptake, thus increasing the stability. The entire methodology has been tested in a synthetic hillslope with two configurations of vegetation type, i.e., trees and shrubs, which have been compared to a configuration without vegetation. The vegetation has been characterized using roots data of two mediterranean plant species. The results demonstrate the capabilities of the topological model in accurately reproducing the observed root structure of the analyzed species. For the environmental setting modeled, the effects of root uptake might be more significant than the mechanical reinforcement; the additional resistance depends strictly on the vegetation root depth. Finally, for the simulated climatic environment, landslides are seasonal, in agreement with past observations.

Effect of different management systems on soil CO2 emission and plant growth in a maize field

NASA Astrophysics Data System (ADS)

Dencso, Marton; Gelybó, Györgyi; Kása, Ilona; Pokovai, Klára; Potyó, Imre; Horel, Ágota; Birkás, Márta; Takács, Tünde; Tóth, Eszter

2017-04-01

In this study soil CO2 emission was examined in a long-term tillage experiment along with observations of plant morphological parameters, arbuscular mycorrhizal fungal (AMF) root colonization, soil properties and soil hydrothermal regime on loamy clay soil (Józsefmajor, Hungary) sown with maize. The tillage experiment was set up in 2002 and we focused on measurements performed in 2016. Based on soil disturbance depths, we selected three different tillage types such as ploughing (26-32 cm), shallow cultivation (12-16 cm), and no tillage (0 cm) for the present study. We examined CO2 emissions in rows compared to between rows within the same treatment in order to estimate the CO2 emission pattern in case of the different treatments. The measurements were carried out using the static chamber method in seven spatial replicates per treatment. For investigating plant morphological parameters of the maize we measured height of plants, leaf number and area, girth area of stem...etc. The CO2 data showed that the difference between ploughing and no tillage treatments was higher in the vegetation period of 2016 than during the dormant season. There were higher CO2 emissions in case of chambers inserted in rows than between rows on average, moreover there were significant differences between certain chambers installed in rows and between rows according to statistical data. This phenomenom can be explained by the enhanced root repiration in the rows. Based on plant morphology measurements we observed that plant developement was slower in no tillage treatment than in ploughing. Depending on sampling date, height of plants data showed 1.1 to 1.5 higher values, while leaf area data showed 1.2 to 2.5 times higher areas in case of ploughing compared to no tillage treatment. This can be due to the different soil conditions and textures of the treatments. The AMF root colonization data showed minor differences between ploughing and no tillage treatments, the highest colonization rates were found in case of shallow cultivation.

A circumferential crack in a cylindrical shell under tension.

NASA Technical Reports Server (NTRS)

Duncan-Fama, M. E.; Sanders, J. L., Jr.

1972-01-01

A closed cylindrical shell under uniform internal pressure has a slit around a portion of its circumference. Linear shallow shell theory predicts inverse square-root-type singularities in certain of the stresses at the crack tips. This paper reports the computed strength of these singularities for different values of a dimensionless parameter based on crack length, shell radius and shell thickness.

Time-lapse 3D electrical resistivity tomography to monitor soil-plant interactions

NASA Astrophysics Data System (ADS)

Boaga, Jacopo; Rossi, Matteo; Cassiani, Giorgio; Putti, Mario

2013-04-01

In this work we present the application of time-lapse non-invasive 3D micro- electrical tomography (ERT) to monitor soil-plant interactions in the root zone in the framework of the FP7 Project CLIMB (Climate Induced Changes on the Hydrology of Mediterranean Basins). The goal of the study is to gain a better understanding of the soil-vegetation interactions by the use of non-invasive techniques. We designed, built and installed a 3D electrical tomography apparatus for the monitoring of the root zone of a single apple tree in an orchard located in the Trentino region, Northern Italy. The micro-ERT apparatus consists of 48 buried electrodes on 4 instrumented micro boreholes plus 24 mini-electrodes on the surface spaced 0.1 m on a square grid. We collected repeated ERT and TDR soil moisture measurements for one year and performed two different controlled irrigation tests: one during a very dry Summer and one during a very wet and highly dynamic plant growing Spring period. We also ran laboratory analyses on soil specimens, in order to evaluate the electrical response at different saturation steps. The results demonstrate that 3D micro-ERT is capable of characterizing subsoil conditions and monitoring root zone activities, especially in terms of root zone suction regions. In particular, we note that in very dry conditions, 3D micro ERT can image water plumes in the shallow subsoil produced by a drip irrigation system. In the very dynamic growing season, under abundant irrigation, micro 3D ERT can detect the main suction zones caused by the tree root activity. Even though the quantitative use of this technique for moisture content balance suffers from well-known inversion difficulties, even the pure imaging of the active root zone is a valuable contribution. However the integration of the measurements in a fully coupled hydrogeophysical inversion is the way forward for a better understanding of subsoil interactions between biomass, hydrosphere and atmosphere.

Biomass Accumulation, Photosynthetic Traits and Root Development of Cotton as Affected by Irrigation and Nitrogen-Fertilization

PubMed Central

Chen, Zongkui; Tao, Xianping; Khan, Aziz; Tan, Daniel K. Y.; Luo, Honghai

2018-01-01

Limitations of soil water and nitrogen (N) are factors which cause a substantial reduction in cotton (Gossypium hirsutum L.) yield, especially in an arid environment. Suitable management decisions like irrigation method and nitrogen fertilization are the key yield improvement technologies in cotton production systems. Therefore, we hypothesized that optimal water-N supply can increase cotton plant biomass accumulation by maintaining leaf photosynthetic capacity and improving root growth. An outdoor polyvinyl chloride (PVC) tube study was conducted to investigate the effects of two water-N application depths, i.e., 20 cm (H20) or 40 cm (H40) from soil surface and four water-N combinations [deficit irrigation (W55) and no N (N0) (W55N0), W55 and moderate N (N1) (W55N1), moderate irrigation (W75) and N0 (W75N0), W75N1] on the roots growth, leaf photosynthetic traits and dry mass accumulation of cotton crops. H20W55N1 combination increased total dry mass production by 29–82% and reproductive organs biomass by 47–101% compared with other counterparts. Root protective enzyme and nitrate reductase (NR) activity, potential quantum yield of photosystem (PS) II (Fv/Fm), PSII quantum yield in the light [Y(II)] and electron transport rate of PSII were significantly higher in H20W55N1 prior to 82 days after emergence. Root NR activity and protective enzyme were significantly correlated with chlorophyll, Fv/Fm, Y(II) and stomatal conductance. Hence, shallow irrigation (20 cm) with moderate irrigation and N-fertilization application could increase cotton root NR activity and protective enzyme leading to enhance light capture and photochemical energy conversion of PSII before the full flowering stage. This enhanced photoassimilate to reproductive organs. PMID:29497435

CO2 dynamics in the Amargosa Desert: Fluxes and isotopic speciation in a deep unsaturated zone

USGS Publications Warehouse

Walvoord, Michelle Ann; Striegl, Robert G.; Prudic, David E.; Stonestrom, David A.

2005-01-01

Natural unsaturated-zone gas profiles at the U.S. Geological Survey's Amargosa Desert Research Site, near Beatty, Nevada, reveal the presence of two physically and isotopically distinct CO2 sources, one shallow and one deep. The shallow source derives from seasonally variable autotrophic and heterotrophic respiration in the root zone. Scanning electron micrograph results indicate that at least part of the deep CO2 source is associated with calcite precipitation at the 110-m-deep water table. We use a geochemical gas-diffusion model to explore processes of CO2 production and behavior in the unsaturated zone. The individual isotopic species 12CO2, 13CO2, and 14CO2 are treated as separate chemical components that diffuse and react independently. Steady state model solutions, constrained by the measured δ13C (in CO2), and δ14C (in CO2) profiles, indicate that the shallow CO2 source from root and microbial respiration composes ∼97% of the annual average total CO2 production at this arid site. Despite the small contribution from deep CO2 production amounting to ∼0.1 mol m−2 yr−1, upward diffusion from depth strongly influences the distribution of CO2 and carbon isotopes in the deep unsaturated zone. In addition to diffusion from deep CO2 production, 14C exchange with a sorbed CO2 phase is indicated by the modeled δ14C profiles, confirming previous work. The new model of carbon-isotopic profiles provides a quantitative approach for evaluating fluxes of carbon under natural conditions in deep unsaturated zones.

Plant traits and trait-based vegetation modeling in the Arctic

NASA Astrophysics Data System (ADS)

Xu, C.; Sevanto, S.; Iversen, C. M.; Salmon, V. G.; Rogers, A.; Wullschleger, S.; Wilson, C. J.

2017-12-01

Arctic tundra environments are characterized by extremely cold temperatures, strong winds, short growing season and thin, nutrient-poor soil layer impacted by permafrost. To survive in this environment vascular plants have developed traits that simultaneously promote high productivity under favorable environments, and survival in harsh conditions. To improve representation of Arctic tundra vegetation in Earth System Models we surveyed plant trait data bases for key trait parameters that influence modeled ecosystem carbon balance, and compared the traits within plant families occurring in the boreal, temperate and arctic zones. The parameters include photosynthetic carbon uptake efficiency (Vcmax and Jmax), root:shoot ratio, and root and leaf nitrogen content, and we focused on woody shrubs. Our results suggest that root nitrogen content in non-nitrogen fixing tundra shrubs is lower than in representatives of the same families in the boreal or temperate zone. High tissue nitrogen concentrations have been related to high vulnerability to drought. The low root nitrogen concentrations in tundra shrubs may thus be an indication of acclimation to shallow soils, and frequent freezing that has a similar impact on the plant conductive tissue as drought. With current nitrogen availability, nitrogen limitation reduces the benefits of increased temperatures and longer growing seasons to the tundra ecosystem carbon balance. Thawing of permafrost will increase nitrogen availability, and promote plant growth and carbon uptake, but it could also make the shrubs more vulnerable to freeze-thaw cycles, with the overall result of reduced shrub coverage. The final outcome of warming temperatures and thawing of permafrost on tundra shrubs will thus depend on the relative speed of warming and plant acclimation.

Modeling hydrological controls on vegetation distribution across topography in Seward Peninsula, Alaska

NASA Astrophysics Data System (ADS)

Mekonnen, Z. A.; Riley, W. J.; Grant, R. F.; Salmon, V. G.; Iversen, C. M.; Biraud, S.; Breen, A. L.

2017-12-01

Observed changes in vegetation affect carbon and nutrient cycles in diverse landscapes of northern ecosystems. These changes can be affected by topography and landscape hydrology. We applied a coupled transect version of the ecosystem model ecosys in a landscape underlain by impermeable permafrost at Kougarok, Alaska to examine hydrological controls on watershed-scale vegetation distributions. Our preliminary results indicate strong relationships between vegetation distribution and soil physical and hydraulic properties that control water, nutrients, and energy flows across the hillslope. Modeled differences in aboveground biomass across the Kougarok hillslope had a good agreement (R2 0.80) with preliminary biomass measurements from the NGEE-Arctic project in summer 2016. Low soil water content from shallower soil depth and lateral flow of water and nutrients in the upper slope position of the hillslope resulted in water stress and low N mineralization for plants with deeper roots. The middle slope position had intermediate soil moisture from deeper soil and higher N mineralization that favoured fast-growing and deep-rooted plants. The gentle slope and deeper soil in the lower slope position resulted in saturated soil, thus reduced O2 for microbes, hence favouring plants with higher root porosity. Earth system models that do not account for the underlying mechanisms of surface and sub-surface flows of water, nutrients, and energy may not predict these types of dynamics in Arctic ecosystems.

Water balance analysis for efficient water allocation in agriculture. A case study: Balta Brailei, Romania

NASA Astrophysics Data System (ADS)

Chitu, Zenaida; Villani, Giulia; Tomei, Fausto; Minciuna, Marian; Aldea, Adrian; Dumitrescu, Alexandru; Trifu, Cristina; Neagu, Dumitru

2017-04-01

Balta Brailei is one of the largest agriculture area in the Danube floodplain, located in SE of Romania. An impressive irrigation system, that covered about 53.500 ha and transferred water from the Danube River, was carried out in the period 1960-1980. Even if the water resources for agriculture in this area cover in most of the cases the volumes required by irrigation water users, the irrigation infrastructure issues as the position of the pumping stations against the river levels hinder the use of the water during low flows periods. An efficient optimization of water allocation in agriculture could avoid periods with water deficit in the irrigation systems. Hydrological processes are essentials in describing the mass and energy exchanges in the atmosphere-plant-soil system. Furthermore, the hydrological regime in this area is very dynamic with many feedback mechanisms between the various parts of the surface and subsurface water regimes. Agricultural crops depend on capillary rise from the shallow groundwater table and irrigation. For an effective optimization of irrigation water in Balta Brailei, we propose to analyse the water balance taking into consideration the water movement into the root zone and the influence of the Danube river, irrigation channel system and the shallow aquifer by combining the soil water balance model CRITERIA and GMS hydrogeological model. CRITERIA model is used for simulating water movement into the soil, while GMS model is used for simulating the shallow groundwater level variation. The understanding of the complex feedbacks between atmosphere, crops and the various parts of the surface and subsurface water regimes in the Balta Brailei will bring more insights for predicting crop water need and water resources for irrigation and it will represent the basis for implementing Moses Platform in this specific area. Moses Platform is a GIS based system devoted to water procurement and management agencies to facilitate planning of irrigation water resources. This work is financed by the European Union's H2020 research and innovation programme under grant agreement No 642258 (Moses Project).

Assessing the temporal stability of spatial patterns of soil apparent electrical conductivity using geophysical methods

NASA Astrophysics Data System (ADS)

De Caires, Sunshine A.; Wuddivira, Mark N.; Bekele, Isaac

2014-10-01

Cocoa remains in the same field for decades, resulting in plantations dominated with aging trees growing on variable and depleted soils. We determined the spatio-temporal variability of key soil properties in a (5.81 ha) field from the International Cocoa Genebank, Trinidad using geophysical methods. Multi-year (2008-2009) measurements of apparent electrical conductivity at 0-0.75 m (shallow) and 0.75-1.5 m (deep) were conducted. Apparent electrical conductivity at deep and shallow gave the strongest linear correlation with clay-silt content (R = 0.67 and R = 0.78, respectively) and soil solution electrical conductivity (R = 0.76 and R = 0.60, respectively). Spearman rank correlation coefficients ranged between 0.89-0.97 and 0.81- 0.95 for apparent electrical conductivity at deep and shallow, respectively, signifying a strong linear dependence between measurement days. Thus, in the humid tropics, cocoa fields with thick organic litter layer and relatively dense understory cover, experience minimal fluctuations in transient properties of soil water and temperature at the topsoil resulting in similarly stable apparent electrical conductivity at shallow and deep. Therefore, apparent electrical conductivity at shallow, which covers the depth where cocoa feeder roots concentrate, can be used as a fertility indicator and to develop soil zones for efficient application of inputs and management of cocoa fields.

Mid-tertiary ash flow tuff cauldrons, southwestern New Mexico

NASA Technical Reports Server (NTRS)

Elston, W. E.

1984-01-01

Characteristics of 28 known or suspected mid-Tertiary ash-flow tuff cauldrons in New Mexico are described. The largest region is 40 km in diameter, and erosional and block faulting processes have exposed levels as far down as the plutonic roots. The study supports a five-stage process: precursor, caldera collapse, early post-collapse, volcanism, major ring-fracture volcanism, and hydrothermal activity. The stages can repeat or the process can stop at any stage. Post-collapse lavas fell into two categories: cauldron lavas, derived from shallow defluidized residues of caldera-forming ash flow tuff eruption, and framework lavas, evolved from a siliceous pluton below the cauldron complex. The youngest caldera was shallow and formed from asymmetric subsidence and collapse of the caldera walls.

Submarine landslides along the eastern Mediterranean Israeli continental slope - a possible source for tsunami

NASA Astrophysics Data System (ADS)

Katz, O.; Reuven, E.; Aharonov, E.

2013-12-01

Numerous shallow submarine slope failures (scars and deposits) are observed in recent high resolution bathymetric grids of the continental slope off the Israeli eastern Mediterranean coast. The nature of these slope failures is currently not comprehensively understood as well as the question of whether the eastern Mediterranean continental slope is continuously or episodically unstable. This question is relevant to tsunami hazard along the densely populated eastern Mediterranean shores. We report here first steps towards understanding the present state of this submarine landslide system, which include mapping and analyzing the geology of the landslides and the hosting slopes. The continental slope extends from water depths of about 150 to more than 1000 meters with a slope of less than 5 degrees in general. Bathymetric grids with pixel resolution of 15 m till water depth of 700 m and 50 m till water depth of 1700 m were used. Analyzing the bathymetry revealed three main submarine surface features on the continental slope: (a) numerous shallow landslides, within the upper sequence of the post-Messenian sediments. Landslide widths range between hundreds to thousand of meters at the scar, with scar heights up to hundred meters. The toes of the landslides are not always mapable and lay up to a few kilometers down slope from the scar. Slope angles within the scars are 5 degrees to more than 15 degrees. In general landslides size decreases from south to north where their head scar depth turns to be shallower northwards. At least two types of landslides were detected: presumably young slides with sharp scars and presumably old slides with secondary slides and secondary drainage systems developed within the scar area; (b) a few kilometers long, north striking step-like lineaments. Step heights are up to 100 meters and the slopes are up to 20 degrees. The offset between parallel steps is less than a kilometer to a few kilometers. Analyzing seismic lines, the steps are interpreted as surface expressions of growth faults rooted at the Messinian evaporates up to 1.5 kilometers below surface; (c) a few north striking channels were also detected with steep walls of more than 15 degrees, up to two kilometers width and a few kilometers length. The nature of these channels is not clear yet although apparently they are also a surface expressions of the growth faults rooted at the Messinian evaporates. Field relations show that the landslides, both young and old, either emerge from the over-steepened steps, or are displaced by them, and hence submarine landslides and steps are apparently contemporaneous. In addition this suggests that salt dynamics at depth is a main drive for at least some of these shallow slides. The above preliminary results testify to the complicated and highly dynamic nature of the studied continental slope, yet to be revealed.

The Hydromechanics of Vegetation for Slope Stabilization

NASA Astrophysics Data System (ADS)

Mulyono, A.; Subardja, A.; Ekasari, I.; Lailati, M.; Sudirja, R.; Ningrum, W.

2018-02-01

Vegetation is one of the alternative technologies in the prevention of shallow landslide prevention that occurs mostly during the rainy season. The application of plant for slope stabilization is known as bioengineering. Knowledge of the vegetative contribution that can be considered in bioengineering was the hydrological and mechanical aspects (hydromechanical). Hydrological effect of the plant on slope stability is to reduce soil water content through transpiration, interception, and evapotranspiration. The mechanical impact of vegetation on slope stability is to stabilize the slope with mechanical reinforcement of soils through roots. Vegetation water consumption varies depending on the age and density, rainfall factors and soil types. Vegetation with high ability to absorb water from the soil and release into the atmosphere through a transpiration process will reduce the pore water stress and increase slope stability, and vegetation with deep root anchoring and strong root binding was potentially more significant to maintain the stability of the slope.

Root growth and spatial distribution characteristics for seedlings raised in substrate and transplanted cotton

PubMed Central

Han, Yingchun; Li, Yabing; Wang, Guoping; Feng, Lu; Yang, Beifang; Fan, Zhengyi; Lei, Yaping; Du, Wenli; Mao, Shuchun

2017-01-01

In this study, transplanting cotton seedlings grown in artificial substrate is considered due to recent increased interest in cotton planting labor saving approaches. The nursery methods used for growing cotton seedlings affect root growth. However, the underlying functional responses of root growth to variations in cotton seedling transplanting methods are poorly understood. We assessed the responses of cotton (Gossypium hirsutum L.) roots to different planting methods by conducting cotton field experiments in 2012 and 2013. A one-factor random block design was used with three replications and three different cotton planting patterns (substrate seedling transplanted cotton (SSTC), soil-cube seedling transplanted cotton (ScSTC) and directly sown cotton (DSC). The distributions and variances of the root area density (RAD) and root length density (RLD) at different cotton growing stages and several yield components were determined. Overall, the following results were observed: 1) The RAD and RLD were greatest near the plants (a horizontal distance of 0 cm) but were lower at W20 and W40 cm in the absence of film mulching than at E20 and E40 cm with film mulching. 2) The roots were confined to shallow depths (20–40 cm), and the root depths of SSTC and DSC were greater than the root depths of ScSTC. 3) Strong root growth was observed in the SSTC at the cotton flowering and boll setting stages. In addition, early onset root growth occurred in the ScSTC, and vigorous root growth occurred throughout all cotton growth stages in DSC. 4) The SSTC plants had more lateral roots with higher root biomass (RB) than the ScSTC, which resulted in higher cotton yields. However, the early onset root growth in the ScSTC resulted in greater pre-frost seed cotton (PFSC) yields. These results can be used to infer how cotton roots are distributed in soils and capture nutrients. PMID:29272298

Quantitative trait locus mapping of deep rooting by linkage and association analysis in rice

PubMed Central

Lou, Qiaojun; Chen, Liang; Mei, Hanwei; Wei, Haibin; Feng, Fangjun; Wang, Pei; Xia, Hui; Li, Tiemei; Luo, Lijun

2015-01-01

Deep rooting is a very important trait for plants’ drought avoidance, and it is usually represented by the ratio of deep rooting (RDR). Three sets of rice populations were used to determine the genetic base for RDR. A linkage mapping population with 180 recombinant inbred lines and an association mapping population containing 237 rice varieties were used to identify genes linked to RDR. Six quantitative trait loci (QTLs) of RDR were identified as being located on chromosomes 1, 2, 4, 7, and 10. Using 1 019 883 single-nucleotide polymorphisms (SNPs), a genome-wide association study of the RDR was performed. Forty-eight significant SNPs of the RDR were identified and formed a clear peak on the short arm of chromosome 1 in a Manhattan plot. Compared with the shallow-rooting group and the whole collection, the deep-rooting group had selective sweep regions on chromosomes 1 and 2, especially in the major QTL region on chromosome 2. Seven of the nine candidate SNPs identified by association mapping were verified in two RDR extreme groups. The findings from this study will be beneficial to rice drought-resistance research and breeding. PMID:26022253

Paired tree and soil instrumentation: what can we learn from two instrumented sites across various gradients in a forested catchment

NASA Astrophysics Data System (ADS)

Hartsough, P. C.; Roudneva, E.; Malazian, A. I.; Meadows, M. W.; Bales, R. C.; Hopmans, J. W.

2012-12-01

Extensive instrumentation both below and above ground across a forested catchment in the Southern Sierra Critical Zone Observatory (SSCZO) within the Kings River Experimental Watershed (KREW) begins to untangle the complex relationship between precipitation, water storage and transpiration as it relates to water availability from deeper sources. The first instrumented site (CZT-1) includes a White Fir (Abies concolor) situated on a flat ridge with access to deep soil moisture. Monitoring and modeling of shallow and deep soil regions confirm that there is significant soil water available from 100-400cm as the tree exhausts water from shallower depths. A root excavation and limited drilling show roots distributed from 30-150cm with limited roots available to access deeper soil water and water stored in the saprolite. At a second instrumented site, CZT-2, a Ponderosa Pine (Pinus ponderosa) was instrumented with a similar suite of sap flow and soil sensors. The CZT-2 site is on a slight slope and is characterized by shallow soils (<90cm) with extensive cobbles and bedrock outcrops with limited access to deeper soil or saprolite water. The second site also sits in the open while the first site is more protected in a closed forest. The two sites show different responses to changes in rain and snow loading from above as well as soil drainage and water depletion from below across a wet to dry transition. They also have different thresholds for transpiration shut down both due to late season water deficit and also during winter periods where air temperatures are high enough to permit photosynthesis. Sap flux and extensive soil water content and water potential measurements around both trees as well as evapotranspiration measurements from a 50m flux tower located adjacent to the two instrumented trees, show little water limitation during wet years and only moderate water limitation during a drought year. Access to deeper water storage pools is confirmed by modeling results across the soil/tree/atmosphere continuum.

Soil Water and Shallow Groundwater Relations in an Agricultural Hillslope

NASA Astrophysics Data System (ADS)

Logsdon, S. D.; Schilling, K. E.

2007-12-01

Shallow water tables contribute to soil water variations under rolling topography, and soil properties contribute to shallow water table fluctutations. Preferential flow through large soil pores can cause a rise in the water table with little increase in soil water except near the soil surface. Lateral groundwater flow can cause a large rise in water table at toeslope and depressional landscape positions. As plants transpire, water can move up into the root zone from the water table and wet soil below the root zone. Roots can utilize water in the capillary fringe. The purpose of this study was to interface automated measurements of soil water content and water table depth for determining the importance of drainage and upward movement. In 2006 soil water and water table depth were monitored at three positions: shoulder, backslope, and toeslope. Neutron access tubes were manually monitored to 2.3 m depth, and automated soil moisture was measured using CS616 probes installed at 0.3, 0.5, 0.7, and 0.9 m depth. Water table depths were monitored manually and automated, but the automated measurements failed during the season at two sites. In 2007, similar measurements were made at one toeslope position, but the CS616 probes were installed at nine depths and better quality automated well depth equipment was used. The 2006 data revealed little landscape position effect on daytime soil water loss on a wetter date; however, on a dry day just before a rain, daytime water loss was greatest for the toeslope positon and least for the shoulder position. After a period of intense rain, a rapid and significant water table rise occurred at the toeslope position but little water table rise occurred at the other landscape positions. The rapid toeslope water table rise was likely caused by lateral groundwater flow whereas minor water table rise at the other positions was likely due to preferential flow since the soil had not wet up below 0.6 m. Use of automated equipment has improved our understanding of the relations of soil water to water table fluctuations in an agricultural field.

Species type controls root strength and influences slope stability in coastal Ecuador

NASA Astrophysics Data System (ADS)

Anttila, E.; Wray, M. E.; Knappe, E.; Ogasawara, T.; Tholt, A.; Cliffe, B.; Oshun, J.

2014-12-01

Tree roots, particular those of old growth trees, provide significant cohesive strength that can prevent shallow landslides. Little is known about the root strength of trees growing in dry tropical forests. In 1997, Bahía de Caráquez, Ecuador experienced a large landslide, which may have been precipitated by massive deforestation along the Ecuadorian coast. We used a tensile spring apparatus combined with root maps to caclulate the cohesive strength of different native species of trees. Whereas the results show the previously reported power law relationship between root diameter and tensile strength, our data also reveals new contributions. First, we find that trees have far stronger and more abundant roots than neighboring bushes, and thus add far more cohesive strength to the hillslope. Furthermore, there is a wide range of tensile strength among the native trees measured, with algarrobo having the strongest roots, and ceibo gernally being weak rooted. Finally, we use a slope stability model to predict failure conditions considering the strength added to a hillslope if vegetation is predominantly composed of bushes, algarrobo, or ceibo. Our results, which are the first of their kind for the Ecuadorian dry tropical forest, will be used to guide the ongoing native reforestation efforts of Global Student Embassy. Our unique partnership with Global Student Embassy connects our field study to practical land use decisions that will lead to increased slope and decreased human danger along coastal Ecuador's dry tropical forest.

Coupled stochastic soil moisture simulation-optimization model of deficit irrigation

NASA Astrophysics Data System (ADS)

Alizadeh, Hosein; Mousavi, S. Jamshid

2013-07-01

This study presents an explicit stochastic optimization-simulation model of short-term deficit irrigation management for large-scale irrigation districts. The model which is a nonlinear nonconvex program with an economic objective function is built on an agrohydrological simulation component. The simulation component integrates (1) an explicit stochastic model of soil moisture dynamics of the crop-root zone considering interaction of stochastic rainfall and irrigation with shallow water table effects, (2) a conceptual root zone salt balance model, and 3) the FAO crop yield model. Particle Swarm Optimization algorithm, linked to the simulation component, solves the resulting nonconvex program with a significantly better computational performance compared to a Monte Carlo-based implicit stochastic optimization model. The model has been tested first by applying it in single-crop irrigation problems through which the effects of the severity of water deficit on the objective function (net benefit), root-zone water balance, and irrigation water needs have been assessed. Then, the model has been applied in Dasht-e-Abbas and Ein-khosh Fakkeh Irrigation Districts (DAID and EFID) of the Karkheh Basin in southwest of Iran. While the maximum net benefit has been obtained for a stress-avoidance (SA) irrigation policy, the highest water profitability has been resulted when only about 60% of the water used in the SA policy is applied. The DAID with respectively 33% of total cultivated area and 37% of total applied water has produced only 14% of the total net benefit due to low-valued crops and adverse soil and shallow water table conditions.

Can hydraulically redistributed water assist surrounding seedlings during summer drought?

PubMed

Muler, A L; van Etten, E J B; Stock, W D; Howard, K; Froend, R H

2018-05-12

Plant interaction studies provide a good understanding of the roles of key species, which can assist restoration of natural ecosystems. Among the interactions, facilitation and competition are known to affect ecosystem structure and function. We investigated whether a deep-rooted species could positively affect surrounding seedlings through hydraulic redistribution during dry months. We conducted two experiments in which seedlings from two species were growing together or isolated from source plants (field experiment) and where plants were isolated from source plants that were connected to or separated from a water table (glasshouse experiment). Survival, growth, water relations and soil water content were measured. We also applied δ 2 H enriched water adjacent to, or into, the roots of source plants to track water movement between plants. Soil water content was higher in shallow layers where source plants could interact with seedlings (field) and when accessing water tables (glasshouse). Seedlings from all treatments had an increase in leaf δ 2 H. Seedlings of Banksia attenuata that were isolated from source plants had the highest survival, growth and stomatal conductance rates. Seedlings of Gompholobium tomentosum presented higher stomatal conductance rates when growing with source plants than when isolated from them during the first months, but this relationship reversed towards the end of summer. These results suggest that source plants and seedlings competed, but the influence of facilitation and competition might change during the year, at least for the shallow-rooted species. Therefore, competition for water and/or other limiting factors must be considered when planning ecological restoration in such areas.

Nitrogen fluxes through unsaturated zones in five agricultural settings across the United States

USGS Publications Warehouse

Green, C.T.; Fisher, L.H.; Bekins, B.A.

2008-01-01

The main physical and chemical controls on nitrogen (N) fluxes between the root zone and the water table were determined for agricultural sites in California, Indiana, Maryland, Nebraska, and Washington from 2004 to 2005. Sites included irrigated and nonirrigated fields; soil textures ranging from clay to sand; crops including corn, soybeans, almonds, and pasture; and unsaturated zone thicknesses ranging from 1 to 22 m. Chemical analyses of water from lysimeters and shallow wells indicate that advective transport of nitrate is the dominant process affecting the flux of N below the root zone. Vertical profiles of (i) nitrogen species, (ii) stable isotopes of nitrogen and oxygen, and (iii) oxygen, N, and argon in unsaturated zone air and correlations between N and other agricultural chemicals indicate that reactions do not greatly affect N concentrations between the root zone and the capillary fringe. As a result, physical factors, such as N application rate, water inputs, and evapotranspiration, control the differences in concentrations among the sites. Concentrations of N in shallow lysimeters exhibit seasonal variation, whereas concentrations in lysimeters deeper than a few meters are relatively stable. Based on concentration and recharge estimates, fluxes of N through the deep unsaturated zone range from 7 to 99 kg ha-1 yr-1. Vertical fluxes of N in ground water are lower due to spatial and historical changes in N inputs. High N fluxes are associated with coarse sediments and high N application rates. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Modeled hydraulic redistribution in tree-grass, CAM-grass, and tree-CAM associations: the implications of crassulacean acid metabolism (CAM).

PubMed

Yu, Kailiang; Foster, Adrianna

2016-04-01

Past studies have largely focused on hydraulic redistribution (HR) in trees, shrubs, and grasses, and recognized its role in interspecies interactions. HR in plants that conduct crassulacean acid metabolism (CAM), however, remains poorly investigated, as does the effect of HR on transpiration in different vegetation associations (i.e., tree-grass, CAM-grass, and tree-CAM associations). We have developed a mechanistic model to investigate the net direction and magnitude of HR at the patch scale for tree-grass, CAM-grass, and tree-CAM associations at the growing season to yearly timescale. The modeling results show that deep-rooted CAM plants in CAM-grass associations could perform hydraulic lift at a higher rate than trees in tree-grass associations in a relatively wet environment, as explained by a significant increase in grass transpiration rate in the shallow soil layer, balancing a lower transpiration rate by CAM plants. By comparison, trees in tree-CAM associations may perform hydraulic descent at a higher rate than those in tree-grass associations in a dry environment. Model simulations also show that hydraulic lift increases the transpiration of shallow-rooted plants, while hydraulic descent increases that of deep-rooted plants. CAM plants transpire during the night and thus perform HR during the day. Based on these model simulations, we suggest that the ability of CAM plants to perform HR at a higher rate may have different effects on the surrounding plant community than those of plants with C3 or C4 photosynthetic pathways (i.e., diurnal transpiration).

A microelectromechanical systems (MEMS) force-displacement transducer for sub-5 nm nanoindentation and adhesion measurements

NASA Astrophysics Data System (ADS)

Zhang, Youfeng; Oh, Yunje; Stauffer, Douglas; Polycarpou, Andreas A.

2018-04-01

We present a highly sensitive force-displacement transducer capable of performing ultra-shallow nanoindentation and adhesion measurements. The transducer utilizes electrostatic actuation and capacitive sensing combined with microelectromechanical fabrication technologies. Air indentation experiments report a root-mean-square (RMS) force resolution of 1.8 nN and an RMS displacement resolution of 0.019 nm. Nanoindentation experiments on a standard fused quartz sample report a practical RMS force resolution of 5 nN and an RMS displacement resolution of 0.05 nm at sub-10 nm indentation depths, indicating that the system has a very low system noise for indentation experiments. The high sensitivity and low noise enables the transducer to obtain high-resolution nanoindentation data at sub-5 nm contact depths. The sensitive force transducer is used to successfully perform nanoindentation measurements on a 14 nm thin film. Adhesion measurements were also performed, clearly capturing the pull-on and pull-off forces during approach and separation of two contacting surfaces.

The effect of chestnut coppice forests abandon on slope stability: a case study

NASA Astrophysics Data System (ADS)

Vergani, Chiara; Bassanelli, Chiara; Rossi, Lorenzo; Chiaradia, Enrico Antonio; Battista Bischetti, Gian

2013-04-01

Sweet chestnut has been fundamental for Italian mountainous economies for many centuries. This kind of forest was traditionally managed by coppicing in shortly rotation (15-20 years) to rapidly produce wood biomass until half of XX century. In the last decades these forests were in large part abandoned due to change in economy which made coppiced forest management unprofitable, especially in steeper slopes and where forest viability is scarce. As a consequence most of them are over aged and very dense, leading to an observed increasing in localized slope instability, primary because of the uprooting of stools (Vogt et al., 2006). In this work the effect of the abandon of chestnut coppice on slope stability was analyzed, focusing on shallow landslides triggering. The mechanical contribution to soil shear strength of differently managed chestnut stand was estimated and compared in terms of additional root cohesion. The study area is located in the Valcuvia Valley (Lombardy Prealps - Northern Italy) at an elevation about 600 m a.s.l., where two different stands, one managed and the other abandoned (over 40 year aged), were chosen. The two sampling stands are on cohesionless slopes (quaternary moraine deposits) and are homogeneous with regard to the substrate, exposure and elevation. Slope steepness influences heavily forestry practices and steeper stands are more frequently abandoned than stands on gentler terrain: in fact in the abandoned coppice the slope was higher (35 degrees against 13 in the managed stand) and no stands completely homogeneous can be found. In each site the main characteristics of the stand were surveyed and a trench in each stand was excavated to analyze root diameter and number distribution with depth; root specimens were also collected for the tensile force determination through laboratory tensile tests. Root distribution and force were then used to estimate root cohesion values through a Fiber Boundle Model (Pollen and Simon, 2005). Results, as expected, show that management didn't affect root mechanical properties, whereas root distribution within the soil profile did. In terms of additional root cohesion, values are higher in the managed stand, and lower in the abandoned one, at least in the first 50 cm of soil. In the abandoned stand, in fact, roots reach deeper layers of soil (100 cm) than the managed one (50 cm), mainly because of an unexpected greater soil depth. To assess the implication of such results in terms of slope stability, a simple infinite slope model was applied to the two conditions. The results showed that the abandoned stand is prone to instability also with a low level of saturation. On the contrary, by applying the additional root cohesion profile obtained in the managed stand to the steeper slopes, stability should be guaranteed, except in the case of total saturation. In conclusion, although more investigations are required especially to extend the number of stands, coppicing practice seem to be fundamental to prevent shallow landsliding in sweet chestnut forests over cohesionless slopes.

Biological intrusion of low-level-waste trench covers

NASA Astrophysics Data System (ADS)

Hakonson, T. E.; Gladney, E. S.

The long-term integrity of low-level waste shallow land burialsites is dependent on the interaction of physical, chemical, and biological factors that modify the waste containment system. The need to consider biological processes as being potentially important in reducing the integrity of waste burial site cover treatment is demonstrated. One approach to limiting biological intrusion through the waste cover is to apply a barrier within the profile to limit root and animal penetration with depth. Experiments in the Los Alamos Experimental Engineered Test Facility were initiated to develop and evaluate biological barriers that are effective in minimizing intrusion into waste trenches. The experiments that are described employ four different candidate barrier materials of geologic origin. Experimental variables that will be evaluated, in addition to barrier type, are barrier depth and sil overburden depth.

Observations of a two-layer soil moisture influence on surface energy dynamics and planetary boundary layer characteristics in a semiarid shrubland

NASA Astrophysics Data System (ADS)

Sanchez-Mejia, Zulia Mayari; Papuga, Shirley A.

2014-01-01

We present an observational analysis examining soil moisture control on surface energy dynamics and planetary boundary layer characteristics. Understanding soil moisture control on land-atmosphere interactions will become increasingly important as climate change continues to alter water availability. In this study, we analyzed 4 years of data from the Santa Rita Creosote Ameriflux site. We categorized our data independently in two ways: (1) wet or dry seasons and (2) one of the four cases within a two-layer soil moisture framework for the root zone based on the presence or absence of moisture in shallow (0-20 cm) and deep (20-60 cm) soil layers. Using these categorizations, we quantified the soil moisture control on surface energy dynamics and planetary boundary layer characteristics using both average responses and linear regression. Our results highlight the importance of deep soil moisture in land-atmosphere interactions. The presence of deep soil moisture decreased albedo by about 10%, and significant differences were observed in evaporative fraction even in the absence of shallow moisture. The planetary boundary layer height (PBLh) was largest when the whole soil profile was dry, decreasing by about 1 km when the whole profile was wet. Even when shallow moisture was absent but deep moisture was present the PBLh was significantly lower than when the entire profile was dry. The importance of deep moisture is likely site-specific and modulated through vegetation. Therefore, understanding these relationships also provides important insights into feedbacks between vegetation and the hydrologic cycle and their consequent influence on the climate system.

Upscaling the Coupled Water and Heat Transport in the Shallow Subsurface

NASA Astrophysics Data System (ADS)

Sviercoski, R. F.; Efendiev, Y.; Mohanty, B. P.

2018-02-01

Predicting simultaneous movement of liquid water, water vapor, and heat in the shallow subsurface has many practical interests. The demand for multidimensional multiscale models for this region is important given: (a) the critical role that these processes play in the global water and energy balances, (b) that more data from air-borne and space-borne sensors are becoming available for parameterizations of modeling efforts. On the other hand, numerical models that consider spatial variations of the soil properties, termed here as multiscale, are prohibitively expensive. Thus, there is a need for upscaled models that take into consideration these features, and be computationally affordable. In this paper, a multidimensional multiscale model coupling the water flow and heat transfer and its respective upscaled version are proposed. The formulation is novel as it describes the multidimensional and multiscale tensorial versions of the hydraulic conductivity and the vapor diffusivity, taking into account the tortuosity and porosity properties of the medium. It also includes the coupling with the energy balance equation as a boundary describing atmospheric influences at the shallow subsurface. To demonstrate the accuracy of both models, comparisons were made between simulation and field experiments for soil moisture and temperature at 2, 7, and 12 cm deep, during 11 days. The root-mean-square errors showed that the upscaled version of the system captured the multiscale features with similar accuracy. Given the good matching between simulated and field data for near-surface soil temperature, the results suggest that it can be regarded as a 1-D variable.

Eco-geomorphic controls on slope stability

NASA Astrophysics Data System (ADS)

Hales, T.; Ford, C.; Hwang, T.; Vose, J.; Band, L.

2009-04-01

Vegetation controls soil-mantled landscape evolution primarily through growth of roots into soil and rock. Root-soil interactions affect the spatial distribution and rate of shallow landsliding and other hillslope processes. Yet the distribution and tensile strength of roots depends on a number of geomorphically-influenced parameters, including soil moisture. Our field-based study investigated the effects of topography on root distributions, tensile strengths, and cohesion. Systematic differences in plant species distribution and soil properties are found in the hollow-nose topography of soil-mantled landscapes; with hollows containing thick colluvial soils and mesic tree species and noses containing thinner, more differentiated soils and more xeric species. We investigated whether these topographic variations in geomorphic and ecologic properties affected the spatial distribution of root cohesion by measuring the distribution and tensile strength of roots from soil pits dug downslope of fifteen individual trees in the Coweeta Hydrologic Laboratory, North Carolina. Our soil pits were located to capture variance in plant species (10 species total), topographic positions (nose, hollow), and sizes (a range of DBH between 5 cm and 60 cm). Root tensile strengths showed little variance with different species, but showed strong differences as a function of topography, with nose roots stronger than hollow roots. Similarly, within species, root cellulose content was systematically greater in trees on nose positions compared to those in hollows. For all species, roots were concentrated close to the soil surface (at least 70% of biomass occurred within 50 cm of the surface) and variations in this pattern were primarily a function of topographic position. Hollow roots were more evenly distributed in the soil column than those on noses, yet trees located on noses had higher mean root cohesion than those in hollows because of a higher root tensile force. These data provide an empirical basis for the development of simple geomorphic transport laws that explicitly include vegetation.

Identifying the optimal spatially and temporally invariant root distribution for a semiarid environment

NASA Astrophysics Data System (ADS)

Sivandran, Gajan; Bras, Rafael L.

2012-12-01

In semiarid regions, the rooting strategies employed by vegetation can be critical to its survival. Arid regions are characterized by high variability in the arrival of rainfall, and species found in these areas have adapted mechanisms to ensure the capture of this scarce resource. Vegetation roots have strong control over this partitioning, and assuming a static root profile, predetermine the manner in which this partitioning is undertaken.A coupled, dynamic vegetation and hydrologic model, tRIBS + VEGGIE, was used to explore the role of vertical root distribution on hydrologic fluxes. Point-scale simulations were carried out using two spatially and temporally invariant rooting schemes: uniform: a one-parameter model and logistic: a two-parameter model. The simulations were forced with a stochastic climate generator calibrated to weather stations and rain gauges in the semiarid Walnut Gulch Experimental Watershed (WGEW) in Arizona. A series of simulations were undertaken exploring the parameter space of both rooting schemes and the optimal root distribution for the simulation, which was defined as the root distribution with the maximum mean transpiration over a 100-yr period, and this was identified. This optimal root profile was determined for five generic soil textures and two plant-functional types (PFTs) to illustrate the role of soil texture on the partitioning of moisture at the land surface. The simulation results illustrate the strong control soil texture has on the partitioning of rainfall and consequently the depth of the optimal rooting profile. High-conductivity soils resulted in the deepest optimal rooting profile with land surface moisture fluxes dominated by transpiration. As we move toward the lower conductivity end of the soil spectrum, a shallowing of the optimal rooting profile is observed and evaporation gradually becomes the dominate flux from the land surface. This study offers a methodology through which local plant, soil, and climate can be accounted for in the parameterization of rooting profiles in semiarid regions.

Defining modeling parameters for juniper trees assuming pleistocene-like conditions at the NTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tarbox, S.R.; Cochran, J.R.

1994-12-31

This paper addresses part of Sandia National Laboratories` (SNL) efforts to assess the long-term performance of the Greater Confinement Disposal (GCD) facility located on the Nevada Test Site (NTS). Of issue is whether the GCD site complies with 40 CFR 191 standards set for transuranic (TRU) waste burial. SNL has developed a radionuclide transport model which can be used to assess TRU radionuclide movement away from the GCD facility. An earlier iteration of the model found that radionuclide uptake and release by plants is an important aspect of the system to consider. Currently, the shallow-rooted plants at the NTS domore » not pose a threat to the integrity of the GCD facility. However, the threat increases substantially it deeper-rooted woodland species migrate to the GCD facility, given a shift to a wetter climate. The model parameters discussed here will be included in the next model iteration which assumes a climate shift will provide for the growth of juniper trees at the GCD facility. Model parameters were developed using published data and wherever possible, data were taken from juniper and pinon-juniper studies that mirrored as many aspects of the GCD facility as possible.« less

Seasonal and inter-annual variation in occurrence and biomass of rooted macrophytes and drift algae in shallow bays

NASA Astrophysics Data System (ADS)

Berglund, J.; Mattila, J.; Rönnberg, O.; Heikkilä, J.; Bonsdorff, E.

2003-04-01

Submerged rooted macrophytes and drift algae were studied in shallow (0-1 m) brackish soft-bottom bays in the Åland Islands, N Baltic Sea, in 1997-2000. The study was performed by aerial photography and ground-truth sampling and the compatibility of the methods was evaluated. The study provided quantitative results on seasonal and inter-annual variation in growth, distribution and biomass of submerged macrophytes and drift algae. On an average, 18 submerged macrophyte species occurred in the studied bays. The most common species, by weight and occurrence, were Chara aspera, Cladophora glomerata, Pilayella littoralis and Potamogeton pectinatus. Filamentous green algae constituted 45-70% of the biomass, charophytes 25-40% and vascular plants 3-18%. A seasonal pattern with a peak in biomass in July-August was found and the mean biomass was negatively correlated with exposure. There were statistically significant differences in coverage among years, and among levels of exposure. The coverage was highest when exposure was low. Both sheltered and exposed bays were influenced by drift algae (30 and 60% occurrence in July-August) and there was a positive correlation between exposure and occurrence of algal accumulations. At exposed sites, most of the algae had drifted in from other areas, while at sheltered ones they were mainly of local origin. Data obtained by aerial photography and ground-truth sampling showed a high concordance, but aerial photography gave a 9% higher estimate than the ground-truth samples. The results can be applied in planning of monitoring and management strategies for shallow soft-bottom areas under potential threat of drift algae.

Water in the Cratonic Mantle: Insights from FTIR Data on Lac De Gras Xenoliths (Slave Craton, Canada)

NASA Technical Reports Server (NTRS)

Peslier, Anne H.; Brandon, Alan D.; Schaffer, Lillian Aurora; O'Reilly, Suzanne Yvette; Griffin, William L.; Morris, Richard V.; Graff, Trevor G.; Agresti, David G.

2014-01-01

The mantle lithosphere beneath the cratonic part of continents is the deepest (> 200 km) and oldest (>2-3 Ga) on Earth, remaining a conundrum as to how these cratonic roots could have resisted delamination by asthenospheric convection over time. Water, or trace H incorporated in mineral defects, could be a key player in the evolution of continental lithosphere because it influences melting and rheology of the mantle. Mantle xenoliths from the Lac de Gras kimberlite in the Slave craton were analyzed by FTIR. The cratonic mantle beneath Lac de Gras is stratified with shallow (<145 km) oxidized ultradepleted peridotites and pyroxenites with evidence for carbonatitic metasomatism, underlain by reduced and less depleted peridotites metasomatized by kimberlite melts. Peridotites analyzed so far have H O contents in ppm weight of 7-100 in their olivines, 58 to 255 in their orthopyroxenes (opx), 11 to 84 in their garnet, and 139 in one clinopyroxene. A pyroxenite contains 58 ppm H2O in opx and 5 ppm H2O in its olivine and garnet. Olivine and garnet from the deep peridotites have a range of water contents extending to higher values than those from the shallow ones. The FTIR spectra of olivines from the shallow samples have more prominent Group II OH bands compared to the olivines from the deep samples, consistent with a more oxidized mantle environment. The range of olivine water content is similar to that observed in Kaapvaal craton peridotites at the same depths (129-184 km) but does not extend to as high values as those from Udachnaya (Siberian craton). The Slave, Kaapvaal and Siberian cratons will be compared in terms of water content distribution, controls and role in cratonic root longevity.

Do septic systems contribute micropollutants and their transformation products to shallow groundwater?

USDA-ARS?s Scientific Manuscript database

Septic systems may contribute micropollutants to shallow groundwater and surface water. We constructed two in situ conventional drainfields (drip dispersal and gravel trench) and an advanced drainfield of septic systems to investigate the fate and transport of micropollutants to shallow groundwater....

PLATEAU IRIS SYNDROME--CASE SERIES.

PubMed

Feraru, Crenguta Ioana; Pantalon, Anca Delia; Chiselita, Dorin; Branisteanu, Daniel

2015-01-01

Plateau iris is characterized by closing the anterior chamber angle due to a large ciliary body or due to its anterior insertion that alters the position of iris periphery in respect to the trabecular meshwork. There are two aspects that need to be differentiated: plateau iris configuration and plateau iris syndrome. The first describes a situation when the iris root is flat and the anterior chamber is not shallow, the latter refers to a post laser iridotomy condition in which a patent iridotomy has removed the relative pupillary block, but goniscopically confirmed angle closure recurs without central shallowing of the anterior chamber. Isolated plateau iris syndrome is rare compared to plateau iris configuration. We hereby present two case reports of plateau iris syndrome in young patients who came to an ophthalmologic consult by chance.

Holistic irrigation water management approach based on stochastic soil water dynamics

NASA Astrophysics Data System (ADS)

Alizadeh, H.; Mousavi, S. J.

2012-04-01

Appreciating the essential gap between fundamental unsaturated zone transport processes and soil and water management due to low effectiveness of some of monitoring and modeling approaches, this study presents a mathematical programming model for irrigation management optimization based on stochastic soil water dynamics. The model is a nonlinear non-convex program with an economic objective function to address water productivity and profitability aspects in irrigation management through optimizing irrigation policy. Utilizing an optimization-simulation method, the model includes an eco-hydrological integrated simulation model consisting of an explicit stochastic module of soil moisture dynamics in the crop-root zone with shallow water table effects, a conceptual root-zone salt balance module, and the FAO crop yield module. Interdependent hydrology of soil unsaturated and saturated zones is treated in a semi-analytical approach in two steps. At first step analytical expressions are derived for the expected values of crop yield, total water requirement and soil water balance components assuming fixed level for shallow water table, while numerical Newton-Raphson procedure is employed at the second step to modify value of shallow water table level. Particle Swarm Optimization (PSO) algorithm, combined with the eco-hydrological simulation model, has been used to solve the non-convex program. Benefiting from semi-analytical framework of the simulation model, the optimization-simulation method with significantly better computational performance compared to a numerical Mote-Carlo simulation-based technique has led to an effective irrigation management tool that can contribute to bridging the gap between vadose zone theory and water management practice. In addition to precisely assessing the most influential processes at a growing season time scale, one can use the developed model in large scale systems such as irrigation districts and agricultural catchments. Accordingly, the model has been applied in Dasht-e-Abbas and Ein-khosh Fakkeh Irrigation Districts (DAID and EFID) of the Karkheh Basin in southwest of Iran. The area suffers from the water scarcity problem and therefore the trade-off between the level of deficit and economical profit should be assessed. Based on the results, while the maximum net benefit has been obtained for the stress-avoidance (SA) irrigation policy, the highest water profitability, defined by economical net benefit gained from unit irrigation water volume application, has been resulted when only about 60% of water used in the SA policy is applied.

Shallow End Response from ATEM

NASA Astrophysics Data System (ADS)

Vetrov, A.

2014-12-01

Different geological, hydrological, environmental and engineering targets are located shallow underground. The information collected with ATEM systems might be very useful for their study; although there are many deeper targets that the ATEM systems are traditionally used for. The idea to raise magnetic moment output and get deeper penetration response was one of the goals of ATEM systems development during the last decade. The shallow geology response was a trade for such systems, which sometimes were almost blind in the first hundred meter under surface. The possibility to achieve shallow end response from ATEM systems has become significant subject in last years. Several airborne TDEM systems got second higher frequency and lower magnetic moment signal to pick up shallow response together with deep one. Having a potential advantage such implementation raises complication and cost of the system. There's no need to receive 500 meter deep response when exploring shallow geology. P-THEM system having a compact size transmitter and relatively light weight is working on one base frequency at a time, but this frequency can be preset before a flight considering survey goals. A study of shallow geology response of the P-THEM system working on different base frequency has been conducted in 2014 in Ontario. The Alliston test area located in Southern Ontario has been flown with the P-THEM system working on base frequencies 30Hz and 90Hz. Results of the observations will be discussed in the presentation. The shallow end data can be used for mineral exploration applications and also for hydrological and environmental studies.

Estimating evapotranspiration in natural and constructed wetlands

USGS Publications Warehouse

Lott, R. Brandon; Hunt, Randall J.

2001-01-01

Difficulties in accurately calculating evapotranspiration (ET) in wetlands can lead to inaccurate water balances—information important for many compensatory mitigation projects. Simple meteorological methods or off-site ET data often are used to estimate ET, but these approaches do not include potentially important site-specific factors such as plant community, root-zone water levels, and soil properties. The objective of this study was to compare a commonly used meterological estimate of potential evapotranspiration (PET) with direct measurements of ET (lysimeters and water-table fluctuations) and small-scale root-zone geochemistry in a natural and constructed wetland system. Unlike what has been commonly noted, the results of the study demonstrated that the commonly used Penman combination method of estimating PET underestimated the ET that was measured directly in the natural wetland over most of the growing season. This result is likely due to surface heterogeneity and related roughness efffects not included in the simple PET estimate. The meterological method more closely approximated season-long measured ET rates in the constructed wetland but may overestimate the ET rate late in the growing season. ET rates also were temporally variable in wetlands over a range of time scales because they can be influenced by the relation of the water table to the root zone and the timing of plant senescence. Small-scale geochemical sampling of the shallow root zone was able to provide an independent evaluation of ET rates, supporting the identification of higher ET rates in the natural wetlands and differences in temporal ET rates due to the timing of senescence. These discrepancies illustrate potential problems with extrapolating off-site estimates of ET or single measurements of ET from a site over space or time.

Soil moisture controls on phenology and productivity in a semi-arid critical zone.

PubMed

Cleverly, James; Eamus, Derek; Restrepo Coupe, Natalia; Chen, Chao; Maes, Wouter; Li, Longhui; Faux, Ralph; Santini, Nadia S; Rumman, Rizwana; Yu, Qiang; Huete, Alfredo

2016-10-15

The Earth's Critical Zone, where physical, chemical and biological systems interact, extends from the top of the canopy to the underlying bedrock. In this study, we investigated soil moisture controls on phenology and productivity of an Acacia woodland in semi-arid central Australia. Situated on an extensive sand plain with negligible runoff and drainage, the carry-over of soil moisture content (θ) in the rhizosphere enabled the delay of phenology and productivity across seasons, until conditions were favourable for transpiration of that water to prevent overheating in the canopy. Storage of soil moisture near the surface (in the top few metres) was promoted by a siliceous hardpan. Pulsed recharge of θ above the hardpan was rapid and depended upon precipitation amount: 150mm storm(-1) resulted in saturation of θ above the hardpan (i.e., formation of a temporary, discontinuous perched aquifer above the hardpan in unconsolidated soil) and immediate carbon uptake by the vegetation. During dry and inter-storm periods, we inferred the presence of hydraulic lift from soil storage above the hardpan to the surface due to (i) regular daily drawdown of θ in the reservoir that accumulates above the hardpan in the absence of drainage and evapotranspiration; (ii) the dimorphic root distribution wherein most roots were found in dry soil near the surface, but with significant root just above the hardpan; and (iii) synchronisation of phenology amongst trees and grasses in the dry season. We propose that hydraulic redistribution provides a small amount of moisture that maintains functioning of the shallow roots during long periods when the surface soil layer was dry, thereby enabling Mulga to maintain physiological activity without diminishing phenological and physiological responses to precipitation when conditions were favourable to promote canopy cooling. Copyright © 2016 Elsevier B.V. All rights reserved.

Proselytization in Albania by Middle Eastern Islamic Organizations

DTIC Science & Technology

2009-03-01

9. SPONSORING /MONITORING AGENCY NAME(S) AND ADDRESS(ES) N/ A 10. SPONSORING/MONITORING AGENCY REPORT NUMBER 11. SUPPLEMENTARY NOTES The...welcomed and positive, some have created problematic situations. Although, the revival of Islam was seen as a sign of freedom, it soon became an unexpected...access a small part of the population. However, Albania’s long history of religious tolerance, shallow roots in formal religion, and Western cultural

Understanding deep roots and their functions in ecosystems: an advocacy for more unconventional research

PubMed Central

Pierret, Alain; Maeght, Jean-Luc; Clément, Corentin; Montoroi, Jean-Pierre; Hartmann, Christian; Gonkhamdee, Santimaitree

2016-01-01

Background Deep roots are a common trait among a wide range of plant species and biomes, and are pivotal to the very existence of ecosystem services such as pedogenesis, groundwater and streamflow regulation, soil carbon sequestration and moisture content in the lower troposphere. Notwithstanding the growing realization of the functional significance of deep roots across disciplines such as soil science, agronomy, hydrology, ecophysiology or climatology, research efforts allocated to the study of deep roots remain incommensurate with those devoted to shallow roots. This is due in part to the fact that, despite technological advances, observing and measuring deep roots remains challenging. Scope Here, other reasons that explain why there are still so many fundamental unresolved questions related to deep roots are discussed. These include the fact that a number of hypotheses and models that are widely considered as verified and sufficiently robust are only partly supported by data. Evidence has accumulated that deep rooting could be a more widespread and important trait among plants than usually considered based on the share of biomass that it represents. Examples that indicate that plant roots have different structures and play different roles with respect to major biochemical cycles depending on their position within the soil profile are also examined and discussed. Conclusions Current knowledge gaps are identified and new lines of research for improving our understanding of the processes that drive deep root growth and functioning are proposed. This ultimately leads to a reflection on an alternative paradigm that could be used in the future as a unifying framework to describe and analyse deep rooting. Despite the many hurdles that pave the way to a practical understanding of deep rooting functions, it is anticipated that, in the relatively near future, increased knowledge about the deep rooting traits of a variety of plants and crops will have direct and tangible influence on how we manage natural and cultivated ecosystems. PMID:27390351

Mitogenomes of Giant-Skipper Butterflies reveal an ancient split between deep and shallow root feeders.

PubMed

Zhang, Jing; Cong, Qian; Fan, Xiao-Ling; Wang, Rongjiang; Wang, Min; Grishin, Nick V

2017-01-01

Background: Giant-Skipper butterflies from the genus Megathymus are North American endemics. These large and thick-bodied Skippers resemble moths and are unique in their life cycles. Grub-like at the later stages of development, caterpillars of these species feed and live inside yucca roots. Adults do not feed and are mostly local, not straying far from the patches of yucca plants. Methods: Pieces of muscle were dissected from the thorax of specimens and genomic DNA was extracted (also from the abdomen of a specimen collected nearly 60 years ago). Paired-end libraries were prepared and sequenced for 150bp from both ends. The mitogenomes were assembled from the reads followed by a manual gap-closing procedure and a phylogenetic tree was constructed using a maximum likelihood method from an alignment of the mitogenomes. Results: We determined mitogenome sequences of nominal subspecies of all five known species of Megathymus and Agathymus mariae to confidently root the phylogenetic tree. Pairwise sequence identity indicates the high similarity, ranging from 88-96% among coding regions for 13 proteins, 22 tRNAs and 2 rRNA, with a gene order typical for mitogenomes of Lepidoptera. Phylogenetic analysis confirms that Giant-Skippers (Megathymini) originate within the subfamily Hesperiinae and do not warrant a subfamily rank. Genus Megathymus is monophyletic and splits into two species groups. M. streckeri and M. cofaqui caterpillars feed deep in the main root system of yucca plants and deposit frass underground. M. ursus , M. beulahae and M. yuccae feed in the yucca caudex and roots near the ground, and deposit frass outside through a "tent" (a silk tube projecting from the center of yucca plant). M. yuccae and M. beulahae are sister species consistently with morphological similarities between them. Conclusions: We constructed the first DNA-based phylogeny of the genus Megathymus from their mitogenomes. The phylogeny agrees with morphological considerations.

Groundwater control of mangrove surface elevation: shrink and swell varies with soil depth

USGS Publications Warehouse

Whelan, K.R.T.; Smith, T. J.; Cahoon, D.R.; Lynch, J.C.; Anderson, G.H.

2005-01-01

We measured monthly soil surface elevation change and determined its relationship to groundwater changes at a mangrove forest site along Shark River, Everglades National Park, Florida. We combined the use of an original design, surface elevation table with new rod-surface elevation tables to separately track changes in the mid zone (0?4 m), the shallow root zone (0?0.35 m), and the full sediment profile (0?6 m) in response to site hydrology (daily river stage and groundwater piezometric pressure). We calculated expansion and contraction for each of the four constituent soil zones (surface [accretion and erosion; above 0 m], shallow zone [0?0.35 m], middle zone [0.35?4 m], and bottom zone [4?6 m]) that comprise the entire soil column. Changes in groundwater pressure correlated strongly with changes in soil elevation for the entire profile (Adjusted R2 5 0.90); this relationship was not proportional to the depth of the soil profile sampled. The change in thickness of the bottom soil zone accounted for the majority (R2 5 0.63) of the entire soil profile expansion and contraction. The influence of hydrology on specific soil zones and absolute elevation change must be considered when evaluating the effect of disturbances, sea level rise, and water management decisions on coastal wetland systems.

Root foraging elicits niche complementarity-dependent yield advantage in the ancient ‘three sisters’ (maize/bean/squash) polyculture

PubMed Central

Zhang, Chaochun; Postma, Johannes A.; York, Larry M.; Lynch, Jonathan P.

2014-01-01

Background and Aims Since ancient times in the Americas, maize, bean and squash have been grown together in a polyculture known as the ‘three sisters’. This polyculture and its maize/bean variant have greater yield than component monocultures on a land-equivalent basis. This study shows that below-ground niche complementarity may contribute to this yield advantage. Methods Monocultures and polycultures of maize, bean and squash were grown in two seasons in field plots differing in nitrogen (N) and phosphorus (P) availability. Root growth patterns of individual crops and entire polycultures were determined using a modified DNA-based technique to discriminate roots of different species. Key Results The maize/bean/squash and maize/bean polycultures had greater yield and biomass production on a land-equivalent basis than the monocultures. Increased biomass production was largely caused by a complementarity effect rather than a selection effect. The differences in root crown architecture and vertical root distribution among the components of the ‘three sisters’ suggest that these species have different, possibly complementary, nutrient foraging strategies. Maize foraged relatively shallower, common bean explored the vertical soil profile more equally, while the root placement of squash depended on P availability. The density of lateral root branching was significantly greater for all species in the polycultures than in the monocultures. Conclusions It is concluded that species differences in root foraging strategies increase total soil exploration, with consequent positive effects on the growth and yield of these ancient polycultures. PMID:25274551

Relationship between root water uptake and soil respiration: A modeling perspective

NASA Astrophysics Data System (ADS)

Teodosio, Bertrand; Pauwels, Valentijn R. N.; Loheide, Steven P.; Daly, Edoardo

2017-08-01

Soil moisture affects and is affected by root water uptake and at the same time drives soil CO2 dynamics. Selecting root water uptake formulations in models is important since this affects the estimation of actual transpiration and soil CO2 efflux. This study aims to compare different models combining the Richards equation for soil water flow to equations describing heat transfer and air-phase CO2 production and flow. A root water uptake model (RWC), accounting only for root water compensation by rescaling water uptake rates across the vertical profile, was compared to a model (XWP) estimating water uptake as a function of the difference between soil and root xylem water potential; the latter model can account for both compensation (XWPRWC) and hydraulic redistribution (XWPHR). Models were compared in a scenario with a shallow water table, where the formulation of root water uptake plays an important role in modeling daily patterns and magnitudes of transpiration rates and CO2 efflux. Model simulations for this scenario indicated up to 20% difference in the estimated water that transpired over 50 days and up to 14% difference in carbon emitted from the soil. The models showed reduction of transpiration rates associated with water stress affecting soil CO2 efflux, with magnitudes of soil CO2 efflux being larger for the XWPHR model in wet conditions and for the RWC model as the soil dried down. The study shows the importance of choosing root water uptake models not only for estimating transpiration but also for other processes controlled by soil water content.

Quantitative trait locus mapping of deep rooting by linkage and association analysis in rice.

PubMed

Lou, Qiaojun; Chen, Liang; Mei, Hanwei; Wei, Haibin; Feng, Fangjun; Wang, Pei; Xia, Hui; Li, Tiemei; Luo, Lijun

2015-08-01

Deep rooting is a very important trait for plants' drought avoidance, and it is usually represented by the ratio of deep rooting (RDR). Three sets of rice populations were used to determine the genetic base for RDR. A linkage mapping population with 180 recombinant inbred lines and an association mapping population containing 237 rice varieties were used to identify genes linked to RDR. Six quantitative trait loci (QTLs) of RDR were identified as being located on chromosomes 1, 2, 4, 7, and 10. Using 1 019 883 single-nucleotide polymorphisms (SNPs), a genome-wide association study of the RDR was performed. Forty-eight significant SNPs of the RDR were identified and formed a clear peak on the short arm of chromosome 1 in a Manhattan plot. Compared with the shallow-rooting group and the whole collection, the deep-rooting group had selective sweep regions on chromosomes 1 and 2, especially in the major QTL region on chromosome 2. Seven of the nine candidate SNPs identified by association mapping were verified in two RDR extreme groups. The findings from this study will be beneficial to rice drought-resistance research and breeding. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Revisiting the two-layer hypothesis: coexistence of alternative functional rooting strategies in savannas.

PubMed

Holdo, Ricardo M

2013-01-01

The two-layer hypothesis of tree-grass coexistence posits that trees and grasses differ in rooting depth, with grasses exploiting soil moisture in shallow layers while trees have exclusive access to deep water. The lack of clear differences in maximum rooting depth between these two functional groups, however, has caused this model to fall out of favor. The alternative model, the demographic bottleneck hypothesis, suggests that trees and grasses occupy overlapping rooting niches, and that stochastic events such as fires and droughts result in episodic tree mortality at various life stages, thus preventing trees from otherwise displacing grasses, at least in mesic savannas. Two potential problems with this view are: 1) we lack data on functional rooting profiles in trees and grasses, and these profiles are not necessarily reflected by differences in maximum or physical rooting depth, and 2) subtle, difficult-to-detect differences in rooting profiles between the two functional groups may be sufficient to result in coexistence in many situations. To tackle this question, I coupled a plant uptake model with a soil moisture dynamics model to explore the environmental conditions under which functional rooting profiles with equal rooting depth but different depth distributions (i.e., shapes) can coexist when competing for water. I show that, as long as rainfall inputs are stochastic, coexistence based on rooting differences is viable under a wide range of conditions, even when these differences are subtle. The results also indicate that coexistence mechanisms based on rooting niche differentiation are more viable under some climatic and edaphic conditions than others. This suggests that the two-layer model is both viable and stochastic in nature, and that a full understanding of tree-grass coexistence and dynamics may require incorporating fine-scale rooting differences between these functional groups and realistic stochastic climate drivers into future models.

Revisiting the Two-Layer Hypothesis: Coexistence of Alternative Functional Rooting Strategies in Savannas

PubMed Central

Holdo, Ricardo M.

2013-01-01

The two-layer hypothesis of tree-grass coexistence posits that trees and grasses differ in rooting depth, with grasses exploiting soil moisture in shallow layers while trees have exclusive access to deep water. The lack of clear differences in maximum rooting depth between these two functional groups, however, has caused this model to fall out of favor. The alternative model, the demographic bottleneck hypothesis, suggests that trees and grasses occupy overlapping rooting niches, and that stochastic events such as fires and droughts result in episodic tree mortality at various life stages, thus preventing trees from otherwise displacing grasses, at least in mesic savannas. Two potential problems with this view are: 1) we lack data on functional rooting profiles in trees and grasses, and these profiles are not necessarily reflected by differences in maximum or physical rooting depth, and 2) subtle, difficult-to-detect differences in rooting profiles between the two functional groups may be sufficient to result in coexistence in many situations. To tackle this question, I coupled a plant uptake model with a soil moisture dynamics model to explore the environmental conditions under which functional rooting profiles with equal rooting depth but different depth distributions (i.e., shapes) can coexist when competing for water. I show that, as long as rainfall inputs are stochastic, coexistence based on rooting differences is viable under a wide range of conditions, even when these differences are subtle. The results also indicate that coexistence mechanisms based on rooting niche differentiation are more viable under some climatic and edaphic conditions than others. This suggests that the two-layer model is both viable and stochastic in nature, and that a full understanding of tree-grass coexistence and dynamics may require incorporating fine-scale rooting differences between these functional groups and realistic stochastic climate drivers into future models. PMID:23950900

Hydrologic characterization of desert soils with varying degrees of pedogenesis: 1. field experiments evaluating plant-relevant soil water behavior

USGS Publications Warehouse

Nimmo, J.R.; Perkins, K.S.; Schmidt, K.M.; Miller, D.M.; Stock, J.D.; Singha, K.

2009-01-01

To assess the eff ect of pedogenesis on the soil moisture dynamics infl uencing the character and quality of ecological habitat, we conducted infi ltration and redistribution experiments on three alluvial deposits in the Mojave National Preserve: (i) recently deposited active wash sediments, (ii) a soil of early Holocene age, and (iii) a highly developed soil of late Pleistocene age. At each, we ponded water in a 1-m-diameter infi ltration ring for 2.3 h and monitored soil water content and matric pressure during and atier infi ltration, using probes and electrical resistivity imaging (ERI). Infi ltration and downward fl ow rates were greater in younger material, favoring deep-rooted species. Deep-rooted species tend to colonize the margins of washes, where they are unaff ected by sediment transport that inhibits colonization. The ERI results support important generalizations, for example that shallower than 0.5 m, infi ltrated water persists longer in highly developed soil, favoring shallow-rooted species. Soil moisture data for the two youngest soils suggested that saturation overshoot, which may have signifi cant but unexplored hydroecologic and pedogenic eff ects, occurred at the horizontally advancing weting front. Spatial heterogeneity of soil properties generally increased with pedogenic development. Evidence suggested that some early-stage developmental processes may promote uniformity; the intermediate- age soil appeared to have the least heterogeneity in terms of textural variation with depth, and also the least anisotropy. Lateral heterogeneity was pronounced in older soil, having a multitude of eff ects on the distribution and retention of soil water, and may facilitate certain water-conserving strategies of plants over what would be possible in a laterally homogeneous soil. ?? Soil Science Society of America.

Spatial and temporal variation of papyrus root mat thickness and water storage in a tropical wetland system.

PubMed

Kayendeke, Ellen Jessica; Kansiime, Frank; French, Helen K; Bamutaze, Yazidhi

2018-06-18

Papyrus wetlands are predominant in permanently inundated areas of tropical Sub Saharan Africa (SSA) and offer both provisioning and regulatory services. Although a wealth of literature exists on wetland functions, the seasonal behaviour of the papyrus mat and function in water storage has received less attention. The objective of this study was to assess the response of the papyrus root mat to changing water levels in a tropical wetland system in Eastern Uganda. We delineated seven transects through a section of a wetland system and mapped wetland bathymetry along these transects. We used three transects to measure spatial and temporal changes in mat thickness and free water column, and to monitor variations in total depth during two seasons. The free water column increased across all transects in the wet season. However, changes in the mat thickness varied spatially and were influenced by the rate of increase of the free water column as well as wetland bathymetry. The proportion of mat compression was higher at the shallow end of the wetland (83%) compared to the deep end (67%). There was a significant negative correlation between changes in free water column and papyrus mat thickness (r = -0.85, p = 000). Therefore, the mat compresses in response to increase in free water column, which increases the ratio of the free water column to root mat thickness. Hence, the wetland accommodates excess water during rainy seasons. Water depth varied from 1.5 m to 2.1 m during the monitoring period, corresponding to a water storage of 61,597 m 3 and 123,355 m 3 respectively. This means a 50% change in water volume for the studied wetland section. This water regulatory function mitigates severity of floods downstream, but the stored water is also useful to the surrounding communities for wetland-edge farm irrigation during dry seasons. Copyright © 2018 Elsevier B.V. All rights reserved.

Depositional environments and processes in Upper Cretaceous nonmarine and marine sediments, Ocean Point dinosaur locality, North Slope, Alaska

USGS Publications Warehouse

Phillips, R.L.

2003-01-01

A 178-m-thick stratigraphic section exposed along the lower Colville River in northern Alaska, near Ocean Point, represents the uppermost part of a 1500 m Upper Cretaceous stratigraphic section. Strata exposed at Ocean Point are assigned to the Prince Creek and Schrader Bluff formations. Three major depositional environments are identified consisting, in ascending order, of floodplain, interdistributary-bay, and shallow-marine shelf. Nonmarine strata, comprising the lower 140 m of this section, consist of fluvial distributaries, overbank sediments, tephra beds, organic-rich beds, and vertebrate remains. Tephras yield isotopic ages between 68 and 72.9 Ma, generally consistent with paleontologic ages of late Campanian-Maastrichtian determined from dinosaur remains, pollen, foraminifers, and ostracodes. Meandering low-energy rivers on a low-gradient, low-relief floodplain carried a suspended-sediment load. The rivers formed multistoried channel deposits (channels to 10 m deep) as well as solitary channel deposits (channels 2-5 m deep). Extensive overbank deposits resulting from episodic flooding formed fining-upward strata on the floodplain. The fining-upward strata are interbedded with tephra and beds of organic-rich sediment. Vertical-accretion deposits containing abundant roots indicate a sheet flood origin for many beds. Vertebrate and nonmarine invertebrate fossils along with plant debris were locally concentrated in the floodplain sediment. Deciduous conifers as well as abundant wetland plants, such as ferns, horsetails, and mosses, covered the coastal plain. Dinosaur skeletal remains have been found concentrated in floodplain sediments in organic-rich bone beds and as isolated bones in fluvial channel deposits in at least nine separate horizons within a 100-m-thick interval. Arenaceous foraminifers in some organic-rich beds and shallow fluvial distributaries indicate a lower coastal plain environment with marginal marine (bay) influence. Marginal marine strata representing interdistributary bay deposits overlie the nonmarine beds and comprise about 15 m of section. Extensive vegetated sand flats, shoals, and shallow channels overlain by shallow bay deposits (less than 7 m deep), containing storm-generated strata characterize the marginal marine beds. Abundant bioturbation and roots characterize the stratigraphic lowest bay deposits; bioturbated sediment, pelecypods, barnacles, and benthic microfossils are found in the overlying bay storm deposits. The sediments abruptly change upward from hummocky cross-stratified bay deposits to a muddy marsh deposit containing shallow organic-rich channels to prograding nonmarine to marginal marine beds. Transgressive, abundantly fossiliferous shallow-marine strata more than 13 m thick comprise the uppermost exposures at Ocean Point. The marine beds overlie nonmarine and bay strata and represent an environment dominated episodically by storms. The age of the marginal marine and marine beds is late Maastrichtian based on pollen. ?? 2003 Elsevier Ltd. All rights reserved.

Numerical investigations of triggering mechanisms of shallow landslides due to heterogeneous spatio-temporal hydrological patterns.

NASA Astrophysics Data System (ADS)

Schwarz, Massimiliano; Cohen, Denis

2016-04-01

Rainfall is one of the major triggering factor of shallow landslide around the world. The increase of soil moisture in the soil influences the stability of a slope through the increase of soil bulk density, the reduction of soil apparent cohesion (due to suction stress), and the increase in pore water pressure.The spatio-temporal transformations of such properties of soil are know to be heterogeneous and under constant change. For instance, there may be a condition where, in cracked clay-soil, water, during a rain event, produces a rapid increase of pore water pressure along preferential flow-paths (crack or roots), while soil moisture and suction within the soil matrix change minimally. An another site in a sandy soil, the situation might be very different where the increase of soil moisture and pore water pressure, and the decrease of soil suction take place more or less simultaneously across the entire soil profile. In both of these cases topography plays a major role in determining the accumulation of water along the slope through different subsurface flows intensities and directions. In many documented cases in the Alps, shallow landslides may also be triggered by the punctual exfiltration of water from bedrock or weathered geological strata. The hydro-geological characteristics of the catchment control this mechanism. These different situations aim to give an idea of the large spectrum of hydrological triggering conditions of shallow landslides. The heterogeneities of these hydrological conditions represent a difficult issue in modeling shallow landslide triggering mechanisms. In the simplest models, hydrology is assumed to influence changes in pore water pressure only, mostly using one dimensional vertical infiltration models. More advanced models consider changes in apparent cohesion due to changes in soil moisture or include more complex hydrological models to simulate water flow and distribution during a rainfall event. However, most models at the regional scale rely on the infinite slope assumption for stability calculations and on continuous hydrological properties of the soil. The objective of the present study is to investigate the influence of non-continuos hydrological features (such as ephemeral springs) on the triggering mechanisms of shallow landslides using a discrete element model (SOSlope) in which the stress-strain behavior of soil is explicitly considered. The application of a stress-strain calculation allows for the simulation of local versus global loading due to hydrological processes. In particular, this study investigates the effects of different types of hydrological loading on the force redistribution on a slope associated with local displacements and following failures of soil masses. Strength and stiffness of soil are considered heterogeneous and are calculated based on the assumption of root distributions within a forested hillslope.

Kelp and Eelgrass in Puget Sound

DTIC Science & Technology

2007-05-01

Florida. 531 p. Cox, P.A. 1988. Hydophilous pollination . Annual Review in of Ecology and Systematics 19:261-280. Dayton, P.K. 1985. Ecology of kelp...Restoration of Coastal Plant Communities. CRC Press, Boca Raton, FL. Phillips, R.C. 1984. The ecology of eelgrass meadows in the Pacific Northwest...moderate to high waves or currents. Eelgrass, which is a flowering plant adapted to the marine environment, roots in sand or mud in shallow waters where

The Rare Perennial Balduina atropurpurea (Asteraceae) at Fort Stewart, Georgia

DTIC Science & Technology

1998-06-01

savannas; moist, sandy, peaty clearings among slash ( Pinus elliottii) and longleaf (P. palustris) pines; and sandhill seeps with seasonal standing...with relatively shallow roots; however, near the end of the autumn drought these soils are still wet. It is believed that the soils remain wet from...internal drainage through the upland soils above the impervious clay layer into the topographically lower bog habitats over the 6 to 8 week drought

Methylmercury production in and export from agricultural wetlands in California, USA: the need to account for physical transport processes into and out of the root zone

USGS Publications Warehouse

Bachand, Philip A.M.; Bachand, Sandra M.; Fleck, Jacob A.; Alpers, Charles N.; Stephenson, Mark; Windham-Myers, Lisamarie

2014-01-01

Concentration and mass balance analyses were used to quantify methylmercury (MeHg) loads from conventional (white) rice, wild rice, and fallowed fields in northern California's Yolo Bypass. These analyses were standardized against chloride to distinguish transport pathways and net ecosystem production (NEP). During summer, chloride loads were both exported with surface water and moved into the root zone at a 2:1 ratio. MeHg and dissolved organic carbon (DOC) behaved similarly with surface water and root zone exports at ~ 3:1 ratio. These trends reversed in winter with DOC, MeHg, and chloride moving from the root zone to surface waters at rates opposite and exceeding summertime root zone fluxes. These trends suggest that summer transpiration advectively moves constituents from surface water into the root zone, and winter diffusion, driven by concentration gradients, subsequently releases those constituents into surface waters. The results challenge a number of paradigms regarding MeHg. Specifically, biogeochemical conditions favoring microbial MeHg production do not necessarily translate to synchronous surface water exports; MeHg may be preserved in the soils allowing for release at a later time; and plants play a role in both biogeochemistry and transport. Our calculations show that NEP of MeHg occurred during both summer irrigation and winter flooding. Wild rice wet harvesting and winter flooding of white rice fields were specific practices that increased MeHg export, both presumably related to increased labile organic carbon and disturbance. Outflow management during these times could reduce MeHg exports. Standardizing MeHg outflow:inflow concentration ratios against natural tracers (e.g. chloride, EC) provides a simple tool to identify NEP periods. Summer MeHg exports averaged 0.2 to 1 μg m− 2 for the different agricultural wetland fields, depending upon flood duration. Average winter MeHg exports were estimated at 0.3 μg m− 2. These exports are within the range reported for other shallow aquatic systems.

Methylmercury production in and export from agricultural wetlands in California, USA: the need to account for physical transport processes into and out of the root zone.

PubMed

Bachand, P A M; Bachand, S M; Fleck, J A; Alpers, C N; Stephenson, M; Windham-Myers, L

2014-02-15

Concentration and mass balance analyses were used to quantify methylmercury (MeHg) loads from conventional (white) rice, wild rice, and fallowed fields in northern California's Yolo Bypass. These analyses were standardized against chloride to distinguish transport pathways and net ecosystem production (NEP). During summer, chloride loads were both exported with surface water and moved into the root zone at a 2:1 ratio. MeHg and dissolved organic carbon (DOC) behaved similarly with surface water and root zone exports at ~3:1 ratio. These trends reversed in winter with DOC, MeHg, and chloride moving from the root zone to surface waters at rates opposite and exceeding summertime root zone fluxes. These trends suggest that summer transpiration advectively moves constituents from surface water into the root zone, and winter diffusion, driven by concentration gradients, subsequently releases those constituents into surface waters. The results challenge a number of paradigms regarding MeHg. Specifically, biogeochemical conditions favoring microbial MeHg production do not necessarily translate to synchronous surface water exports; MeHg may be preserved in the soils allowing for release at a later time; and plants play a role in both biogeochemistry and transport. Our calculations show that NEP of MeHg occurred during both summer irrigation and winter flooding. Wild rice wet harvesting and winter flooding of white rice fields were specific practices that increased MeHg export, both presumably related to increased labile organic carbon and disturbance. Outflow management during these times could reduce MeHg exports. Standardizing MeHg outflow:inflow concentration ratios against natural tracers (e.g. chloride, EC) provides a simple tool to identify NEP periods. Summer MeHg exports averaged 0.2 to 1 μg m(-2) for the different agricultural wetland fields, depending upon flood duration. Average winter MeHg exports were estimated at 0.3 μg m(-2). These exports are within the range reported for other shallow aquatic systems. Copyright © 2013 Elsevier B.V. All rights reserved.

Growing trees on completed sanitary landfills. [Nyssa sylvatica, Picea abies, Ginkgo biloba

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leone, I.A.; Gilman, E.F.; Flower, F.B.

1983-01-01

A 10-year old completed landfill in New Jersey consisting of 9 m (depth) of refuse covered with 15-25 cm of soil was cleared of debris and vegetation and covered with 30 cm of subsoil and 15-25 cm of topsoil. Nineteen coniferous and broadleaved species were planted on the landfill and on a control site in 1975, and trees were maintained and growth and condition monitored over 4 years. On the basis of shoot length and stem area increase, the most successful of the surviving trees were Nyssa sylvatica, Picea abies and Ginkgo biloba, in decreasing order of tolerance. Tolerance ofmore » landfill conditions appeared to be greatest in those species with low water requirements, a slow growth rate, high acid tolerance and a shallow root system. (Refs. 11).« less

Water uptake depth analyses using stable water isotopes in rice-based cropping systems in Southeastern Asia

NASA Astrophysics Data System (ADS)

Mahindawansha, Amani; Kraft, Philipp; Orlowski, Natalie; Racela, Healthcliff S. U.; Breuer, Lutz

2017-04-01

Rice is one of the most water-consuming crop in the world. Understanding water source utilization of rice-based cropping systems will help to improve water use efficiency (WUE) in paddy management. The objectives of our study were to (1) determine the contributions of various water sources to plant growth in diversified rice-based production systems (wet rice, aerobic rice) (2) investigate water uptake depths at different maturity periods during wet and dry conditions, and (3) calculate WUE of the cropping systems. Our field experiment is based on changes of stable water isotope concentrations in the soil-plant-atmosphere continuum due to transpiration and evaporation. Soil samples were collected together with root sampling from nine different depths under vegetative, reproductive, and matured periods of plant growth together with stem samples. Soil and plant samples were extracted by cryogenic vacuum extraction. Groundwater, surface water, rain, and irrigation water were sampled weekly. All water samples were analyzed for hydrogen and oxygen isotope ratios (δ2H and δ18O) via a laser spectroscope (Los Gatos DLT100). The direct inference approach, which is based on comparing isotopic compositions between plant stem water and soil water, were used to determine water sources taken up by plant. Multiple-source mass balance assessment can provide the estimated range of potential contributions of water from each soil depth to root water uptake of a crop. These estimations were used to determine the proportion of water from upper soil horizons and deep horizons for rice in different maturity periods during wet and dry seasons. Shallow soil water has the higher evaporation than from deeper soil water where the highest evaporation effect is at 5 cm depth (drying front). Water uptake is mostly taking place from surface water in the vegetative and between 5-10 cm in the reproductive period, since roots have grown widely and deeper in the reproductive stage. This will be helpful to understand the WUE and identify the most efficient water management system and the influence of groundwater and surface water during both seasons in rice-based cropping ecosystems by using means of stable water isotope.

Automated Root Tracking with "Root System Analyzer"

NASA Astrophysics Data System (ADS)

Schnepf, Andrea; Jin, Meina; Ockert, Charlotte; Bol, Roland; Leitner, Daniel

2015-04-01

Crucial factors for plant development are water and nutrient availability in soils. Thus, root architecture is a main aspect of plant productivity and needs to be accurately considered when describing root processes. Images of root architecture contain a huge amount of information, and image analysis helps to recover parameters describing certain root architectural and morphological traits. The majority of imaging systems for root systems are designed for two-dimensional images, such as RootReader2, GiA Roots, SmartRoot, EZ-Rhizo, and Growscreen, but most of them are semi-automated and involve mouse-clicks in each root by the user. "Root System Analyzer" is a new, fully automated approach for recovering root architectural parameters from two-dimensional images of root systems. Individual roots can still be corrected manually in a user interface if required. The algorithm starts with a sequence of segmented two-dimensional images showing the dynamic development of a root system. For each image, morphological operators are used for skeletonization. Based on this, a graph representation of the root system is created. A dynamic root architecture model helps to determine which edges of the graph belong to an individual root. The algorithm elongates each root at the root tip and simulates growth confined within the already existing graph representation. The increment of root elongation is calculated assuming constant growth. For each root, the algorithm finds all possible paths and elongates the root in the direction of the optimal path. In this way, each edge of the graph is assigned to one or more coherent roots. Image sequences of root systems are handled in such a way that the previous image is used as a starting point for the current image. The algorithm is implemented in a set of Matlab m-files. Output of Root System Analyzer is a data structure that includes for each root an identification number, the branching order, the time of emergence, the parent identification number, the distance between branching point to the parent root base, the root length, the root radius and the nodes that belong to each individual root path. This information is relevant for the analysis of dynamic root system development as well as the parameterisation of root architecture models. Here, we show results of Root System Analyzer applied to analyse the root systems of wheat plants grown in rhizotrons. Different treatments with respect to soil moisture and apatite concentrations were used to test the effects of those conditions on root system development. Photographs of the root systems were taken at high spatial and temporal resolution and root systems are automatically tracked.

Shallow and deep controls on lava lake surface motion at Kīlauea Volcano

USGS Publications Warehouse

Patrick, Matthew R.; Orr, Tim R.; Swanson, Don; Lev, Einat

2016-01-01

Lava lakes provide a rare window into magmatic behavior, and lake surface motion has been used to infer deeper properties of the magmatic system. At Halema'uma'u Crater, at the summit of Kīlauea Volcano, multidisciplinary observations for the past several years indicate that lava lake surface motion can be broadly divided into two regimes: 1) stable and 2) unstable. Stable behavior is driven by lava upwelling from deeper in the lake (presumably directly from the conduit) and is an intrinsic process that drives lava lake surface motion most of the time. This stable behavior can be interrupted by periods of unstable flow (often reversals) driven by spattering – a shallowly-rooted process often extrinsically triggered by small rockfalls from the crater wall. The bursting bubbles at spatter sources create void spaces and a localized surface depression which draws and consumes surrounding surface crust. Spattering is therefore a location of lava downwelling, not upwelling. Stable (i.e. deep, upwelling-driven) and unstable (i.e. shallow, spattering-driven) behavior often alternate through time, have characteristic surface velocities, flow directions and surface temperature regimes, and also correspond to changes in spattering intensity, outgassing rates, lava level and seismic tremor. These results highlight that several processes, originating at different depths, can control the motion of the lava lake surface, and long-term interdisciplinary monitoring is required to separate these influences. These observations indicate that lake surface motion is not always a reliable proxy for deeper lake or magmatic processes. From these observations, we suggest that shallow outgassing (spattering), not lake convection, drives the variations in lake motion reported at Erta 'Ale lava lake.

Shallow and deep controls on lava lake surface motion at Kīlauea Volcano

NASA Astrophysics Data System (ADS)

Patrick, M. R.; Orr, T.; Swanson, D. A.; Lev, E.

2016-12-01

Lava lakes provide a rare window into magmatic behavior, and lake surface motion has been used to infer deeper properties of the magmatic system. At Halema'uma'u Crater, at the summit of Kīlauea Volcano, multidisciplinary observations for the past several years indicate that lava lake surface motion can be broadly divided into two regimes: 1) stable and 2) unstable. Stable behavior is driven by lava upwelling from deeper in the lake (presumably directly from the conduit) and is an intrinsic process that drives lava lake surface motion most of the time. This stable behavior can be interrupted by periods of unstable flow (often reversals) driven by spattering - a shallowly-rooted process often extrinsically triggered by small rockfalls from the crater wall. The bursting bubbles at spatter sources create void spaces and a localized surface depression which draws and consumes surrounding surface crust. Spattering is therefore a location of lava downwelling, not upwelling. Stable (i.e. deep, upwelling-driven) and unstable (i.e. shallow, spattering-driven) behavior often alternate through time, have characteristic surface velocities, flow directions and surface temperature regimes, and also correspond to changes in spattering intensity, outgassing rates, lava level and seismic tremor. These results highlight that several processes, originating at different depths, can control the motion of the lava lake surface, and long-term interdisciplinary monitoring is required to separate these influences. These observations indicate that lake surface motion is not always a reliable proxy for deeper lake or magmatic processes. From these observations, we suggest that shallow outgassing (spattering), not lake convection, drives the variations in lake motion reported at Erta 'Ale lava lake.

Amino acid production exceeds plant nitrogen demand in Siberian tundra

NASA Astrophysics Data System (ADS)

Wild, Birgit; Eloy Alves, Ricardo J.; Bárta, Jiři; Čapek, Petr; Gentsch, Norman; Guggenberger, Georg; Hugelius, Gustaf; Knoltsch, Anna; Kuhry, Peter; Lashchinskiy, Nikolay; Mikutta, Robert; Palmtag, Juri; Prommer, Judith; Schnecker, Jörg; Shibistova, Olga; Takriti, Mounir; Urich, Tim; Richter, Andreas

2018-03-01

Arctic plant productivity is often limited by low soil N availability. This has been attributed to slow breakdown of N-containing polymers in litter and soil organic matter (SOM) into smaller, available units, and to shallow plant rooting constrained by permafrost and high soil moisture. Using 15N pool dilution assays, we here quantified gross amino acid and ammonium production rates in 97 active layer samples from four sites across the Siberian Arctic. We found that amino acid production in organic layers alone exceeded literature-based estimates of maximum plant N uptake 17-fold and therefore reject the hypothesis that arctic plant N limitation results from slow SOM breakdown. High microbial N use efficiency in organic layers rather suggests strong competition of microorganisms and plants in the dominant rooting zone. Deeper horizons showed lower amino acid production rates per volume, but also lower microbial N use efficiency. Permafrost thaw together with soil drainage might facilitate deeper plant rooting and uptake of previously inaccessible subsoil N, and thereby promote plant productivity in arctic ecosystems. We conclude that changes in microbial decomposer activity, microbial N utilization and plant root density with soil depth interactively control N availability for plants in the Arctic.

Root coverage with Emdogain/AlloDerm: a new way to treat gingival recessions.

PubMed

Saadoun, André P

2008-01-01

The recession of the gingival margin is becoming a more prominent condition in the oral situation of many patients and should be treated at its earliest detection. The multifactorial etiology, decision modality, and current trends in the treatment of gingival recession are discussed in this article. The surgical technique of choice depends on several factors, but among the different surgical protocols available, the clinician should select one that will minimize surgical trauma and achieve predictable esthetic results. All of the approaches described in this article can effectively treat deep and shallow Class I or II buccal recessions. Recently, as an alternative to autogenous gingival grafts in root coverage procedures, enamel matrix derivative (Emdogain) and acellular dermal matrix allograft (AlloDerm) were utilized to correct these gingival defects, negating the morbidity and the requirement for a second palatal surgical procedure. Emdogain or AlloDerm materials used alone or in combination are a predictable treatment for root coverage, are relatively easy to perform (although they are technique sensitive), present low patient morbidity, offer a significant increase in the percentage of root coverage and amount of keratinized tissue, and should be part of the periodontal plastic surgery armamentarium.

Convergence of the effect of root hydraulic functioning and root hydraulic redistribution on ecosystem water and carbon balance across divergent forest ecosystems

NASA Astrophysics Data System (ADS)

domec, J.; King, J. S.; Ogée, J.; Noormets, A.; Warren, J.; Meinzer, F. C.; Sun, G.; Jordan-Meille, L.; Martineau, E.; Brooks, R. J.; Laclau, J.; Battie Laclau, P.; McNulty, S.

2012-12-01

INVITED ABSTRACT: Deep root water uptake and hydraulic redistribution (HR) play a major role in forest ecosystems during drought, but little is known about the impact of climate change on root-zone processes influencing HR and its consequences on water and carbon fluxes. Using data from two old growth sites in the western USA, two mature sites in the eastern USA, one site in southern Brazil, and simulations with the process-based model MuSICA, our objectives were to show that HR can 1) mitigate the effects of soil drying on root functioning, and 2) have important implications for carbon uptake and net ecosystem exchange (NEE). In a dry, old-growth ponderosa pine (USA) and a eucalyptus stand (Brazil) both characterized by deep sandy soils, HR limited the decline in root hydraulic conductivity and increased dry season tree transpiration (T) by up to 30%, which impacted NEE through major increases in gross primary productivity (GPP). The presence of deep-rooted trees did not necessarily imply high rates of HR unless soil texture allowed large water potential gradients to occur, as was the case in the wet old-growth Douglas-fir/mixed conifer stand. At the Duke mixed hardwood forest characterized by a shallow clay-loam soil, modeled HR was low but not negligible, representing annually up to 10% of T, and maintaining root conductance high. At this site, in the absence of HR, it was predicted that annual GPP would have been diminished by 7-19%. At the coastal loblolly pine plantation, characterized by deep organic soil, HR limited the decline in shallow root conductivity by more than 50% and increased dry season T by up to 40%, which increased net carbon gain by the ecosystem by about 400 gC m-2 yr-1, demonstrating the significance of HR in maintaining the stomatal conductance and assimilation capacity of the whole ecosystem. Under future climate conditions (elevated atmospheric [CO2] and temperature), HR is predicted to be reduced by up to 50%; reducing the resilience of trees to droughts. Under future conditions, T is predicted to stay the same at the Duke mixed hardwood forest, but to decline slightly at the coastal loblolly pine plantation and slightly increase at the old-growth ponderosa pine stand and the eucalyptus plantation. As a consequence, water use efficiency in all sites was predicted to improve dramatically under future climate conditions. Our simulations also showed that the negative effect of drier nights on HR would be greater under future climate conditions. Assuming no increase in stomatal control with increasing drier nights, increased vapor pressure deficit at night under future conditions was sufficient to drive significant nighttime T at all sites , which reduced HR, because the plant and the atmosphere became a sink for hydraulically redistributed water . We concluded that the predicted reductions in HR under future climate conditions are expected to play an important regulatory role in land-atmosphere interactions by affecting whole ecosystem carbon and water balance. We suggest that root distribution should be treated dynamically in response to climate change and that HR and its interactions with rooting depth and soil texture should be implemented in soil-vegetation-atmosphere transfer models.

The patterns and implications of diurnal variations in the d-excess of plant water, shallow soil water and air moisture

NASA Astrophysics Data System (ADS)

Zhao, L.; Wang, L.; Liu, X.; Xiao, H.; Ruan, Y.; Zhou, M.

2014-10-01

Deuterium excess (d-excess) of air moisture is traditionally considered a conservative tracer of oceanic evaporation conditions. Recent studies challenge this view and emphasize the importance of vegetation activity in controlling the dynamics of air moisture d-excess. However, direct field observations supporting the role of vegetation in d-excess variations are not well documented. In this study, we quantified the d-excess of air moisture, shallow soil water (5 and 10 cm) and plant water (leaf, root and xylem) of multiple dominant species at hourly intervals during three extensive field campaigns at two climatically different locations within the Heihe River basin, northwestern China. The ecosystems at the two locations range from forest to desert. The results showed that with the increase in temperature (T) and the decrease in relative humidity (RH), the δD-δ18O regression lines of leaf water, xylem water and shallow soil water deviated gradually from their corresponding local meteoric water line. There were significant differences in d-excess values between different water pools at all the study sites. The most positive d-excess values were found in air moisture (9.3‰) and the most negative d-excess values were found in leaf water (-85.6‰). The d-excess values of air moisture (dmoisture) and leaf water (dleaf) during the sunny days, and shallow soil water (dsoil) during the first sunny day after a rain event, showed strong diurnal patterns. There were significantly positive relationships between dleaf and RH and negative relationships between dmoisture and RH. The correlations of dleaf and dmoisture with T were opposite to their relationships with RH. In addition, we found opposite diurnal variations for dleaf and dmoisture during the sunny days, and for dsoil and dmoisture during the first sunny day after the rain event. The steady-state Craig-Gordon model captured the diurnal variations in dleaf, with small discrepancies in the magnitude. Overall, this study provides a comprehensive and high-resolution data set of d-excess of air moisture, leaf, root, xylem and soil water. Our results provide direct evidence that dmoisture of the surface air at continental locations can be significantly altered by local processes, especially plant transpiration during sunny days. The influence of shallow soil water on dmoisture is generally much smaller compared with that of plant transpiration, but the influence could be large on a sunny day right after rainfall events.

Nitrogen Ion Form and Spatio-temporal Variation in Root Distribution Mediate Nitrogen Effects on Lifespan of Ectomycorrhizal Roots

NASA Astrophysics Data System (ADS)

Kou, L.; McCormack, M. L.; Chen, W.; Guo, D.; Wang, H.; Li, S.; Gao, W.; Yang, H.

2017-12-01

Background and Aims Absorptive roots active in soil resource uptake are often intimately associated with mycorrhizal fungi, yet it remains unclear how nitrogen (N) loading affects lifespan of absorptive roots associating with ectomycorrhizal (ECM) fungi. Methods Through a three-year minirhizotron experiment, we investigated the responses of ECM lifespan to different rates of N addition and examined the roles of N ion form, rooting depth, seasonal root cohort, and ECM morphotype in mediating the N effects on ECM lifespan in a slash pine (Pinus elliottii) forest in subtropical China. Results High rates of NH4Cl significantly decreased foliar P concentrations and increased foliar N: P ratios, and mean ECM lifespan was negatively correlated to foliar P concentration. N additions generally increased the lifespan of most ectomycorrhizas, but the specific differences were context dependent. N rates and forms exerted significant positive effects on ECM lifespan with stronger effects occurring at high N rates and under ammonium N addition. N additions extended lifespan of ectomycorrhizas in shallower soil and born in spring and autumn, but shortened lifespan of ectomycorrhizas in deeper soil and born in summer and winter. N additions reduced lifespan of dichotomous ectomycorrhizas, but increased lifespan of coralloid ectomycorrhizas. Conclusions The increased ECM lifespan in response to N additions may primarily be driven by the persistent and aggravated P limitation to plants. Our findings highlight the importance of environmental contexts in controlling ECM lifespan and the need to consider potential differences among mycorrhizal morphotypes when studying N—lifespan relationships of absorptive roots in the context of N deposition.

Climate changes effects on vegetation in Mediterranean areas

NASA Astrophysics Data System (ADS)

Viola, F.; Pumo, D.; Noto, L. V.

2009-04-01

The Mediterranean ecosystems evolved under climatic conditions characterized by precipitations markedly out of phase with the growing period for the vegetation there established. In such environments, deep and shallow rooted species cohabit and compete each other. The formers, being characterized by deeper root, are able to utilize the water stored during the dormant season, while the conditions of shallow rooted plant are closely related to the intermittence of the precipitations. A numerical model has been here used in order to carry out an analysis of the potential climate changes influence on the vegetation state in a typical Mediterranean environment, such as Sicilian one. The most important consequences arising from climate changes in the Mediterranean area, due to the CO2 increase, are the temperatures raise and the contemporaneous rainfall reduction. Probably, this reduction could be accompanied by an increase in events intensity and, at the same time, by a decrease in the number of annual events. There are very few information about possible changes in the distribution of the rainfall events over the year. However, according to the analysis of the recorded trend, it is possible to predict that the rainfall reduction will be mainly concentrated during the autumnal and wintry months. The goal of this work is a quantitative evaluation of the effects due to the climatic forcing changes, on vegetation water stress. In particular, great attention is paid to the effects that rainfall decrease may have on vegetation, by itself or coupled with the temperature increase. A detailed investigation on the influence of the variations in rainfall seasonality, frequency and intensity is carried out. In this work two vegetation covers, with shallow and deep rooting depth (grass and tree) laying on three different soil types (loamy sand, sandy loam and clay) are considered. Simulations on Mediterranean ecosystems have lead to recognize the role of the rainfall amount, frequency and temporal distribution. Rainfall decrease increases the vegetation water stress much more than temperature increase do. Intense and rare rainfall events, as they are expected to be, could attenuate the effects of rainfall reduction because of the less interception correlated to them. The future rainfall distribution over the year is also crucial for vegetation water stress. If the current ratio between the growing season and the dormant season rainfall will be kept, trees and grasses will suffer a common increase of water stress, which seems more severe for trees than for grasses. Otherwise, if the rainfall reduction will be concentrated during the wintry periods, as emerges from literature, grasses will have some advantages over the trees species. In this conditions grasses will keep the water stress similar to the nowadays value, while trees will suffer for the lack of the winter recharge increasing their water stress.

An Early Pennsylvanian threshold for the influence of vegetation on fluvial landscapes, based on the geological record of Atlantic Canada

NASA Astrophysics Data System (ADS)

Gibling, Martin; Ielpi, Alessandro; Bashforth, Arden; Davies, Neil

2015-04-01

Vegetation profoundly influences modern fluvial systems, depending on plant life-history strategies, tolerance to disturbance, and habitat drainage. However, direct evidence for these dynamic relationships is cryptic and has commonly been overlooked in ancient deposits. We report evidence for profound interactions between channels, in situ and transported vegetation in Lower Pennsylvanian formations of Atlantic Canada (~310 Ma), attributed to braided, meandering and fixed-channel (anastomosing) systems. Plant groups include lycopsids that preferred stable wetland settings, disturbance-tolerant calamitaleans, and deeply rooted cordaitaleans (early gymnosperms) that originated in the late Mississippian and colonised both wetland and dryland settings. For the meandering and anastomosing channel deposits, upright vegetation was observed within channel-based bedforms and bars and on channel margins. Lycopsids and calamitalean groves colonized the channel bed and bank-attached bars during periods of reduced flow, nucleating bar growth after flow resumed. Upright lycopsids and cordaitaleans are common along channel cutbanks and are locally tilted towards the channel, implying involvement in bank stabilization. Rhizoconcretions that formed around deep cordaitalean roots may have aided bank reinforcement. Tetrapod and arthropod trackways in the channel deposits indicate a close linkage between riparian and aquatic ecosystems. In the braided systems, sediments that contain abundant cordaitalean logs constitute nearly 20% of channel deposits, and the logs form channel-base lags, fill channels up to 6 m deep, and form nuclei for shallow sandbars. Log accumulations overlain by shale lenses imply a contribution to channel avulsion. Rooted channel-sandstones containing upright trees are interpreted as vegetated islands in an island-braided system. Anastomosing systems are abundant in these Lower Pennsylvanian formations but rare in older strata, and the multi-channel island-braided systems are the oldest yet described. The rise to prominence of these two anabranching styles, broadly coinciding with the rise of cordaitaleans, implies that fluvial landscapes had crossed a threshold from a geomorphic and biogeomorphic mode of operation into a fully ecological mode with feedback loops between vegetation and fluvial processes. Thereafter, patterns of interaction between rivers and vegetation broadly resembled those of today, with prominent riparian corridors and profound consequences for aquatic, soil and other terrestrial ecosystems. Our field observations confirm the co-evolution of river systems, vegetation and animals, and highlight a need to incorporate vegetation more fully into earth-system and landscape models.

Mesocosm-Scale Experimental Quantification of Plant-Fungi Associations on Carbon Fluxes and Mineral Weathering

NASA Astrophysics Data System (ADS)

Andrews, M. Y.; Palmer, B.; Leake, J. R.; Banwart, S. A.; Beerling, D. J.

2009-12-01

The rise of land plants in the Paleozoic is classically implicated as driving lower atmospheric CO2 levels through enhanced weathering of Ca and Mg bearing silicate minerals. However, this view overlooks the fact that plants coevolved with associated mycorrhizal fungi over this time, with many of the weathering processes usually ascribed to plants actually being driven by the combined activities of roots and mycorrhizal fungi. Here we present initial results from a novel mesocosm-scale laboratory experiment designed to allow investigation of plant-driven carbon flux and mineral weathering at different soil depths under ambient (400 ppm) and elevated (1500 ppm) atmospheric CO2. Four species of plants were chosen to address evolutionary trends in symbiotic mycorrhizal association and rooting depth on biologically driven silicate weathering under the different CO2 regimes. Gymnosperms were used to investigate potential differences in weathering capabilities of two fungal symbioses: Sequoia sempervirens and Metasequoia glyptostroboides (arbuscular mycorrhizal, AM) and Pinus sylvestris (ectomycorrhizal, EM), and the shallow rooted ancient fern, Osmunda regalis, used to provide a contrast to the three more deeply rooted trees. Plants were grown in a cylindrical mesocosm with four horizontal inserts at each depth. These inserts are a mesh-covered dual-core unit whereby an inner core containing silicate minerals can be rotated within an outer core. The mesh excludes roots from the cylinders allowing fungal-rock pairings to be examined at each depth. Each core contains either basalt or granite, each with severed (rotated cores) or intact (static cores) mycorrhizae. This system provides a unique opportunity to examine the ability of a plant to weather minerals with and without its symbiotic fungi. Preliminary results indicate marked differences in nutritional and water requirements, and response to elevated CO2 between the species. The bulk solution chemistries (pH, conductivity, and geochemistry) are very different from each other, and from the plant-free controls. 14C labelling of the above-ground shoots indicates preferential allocation of photosynthate to fungal partners associated with basalt as compared to granite. Ongoing measurements will characterize the effects of fungal colonization on basalt and granite weathering in these systems. The novel ability to simultaneously measure biological and geochemical processes with depth allows us to better understand the role of plant and fungal evolution in the shaping Earth’s CO2 history.

A QTL for root growth angle on rice chromosome 7 is involved in the genetic pathway of DEEPER ROOTING 1.

PubMed

Uga, Yusaku; Kitomi, Yuka; Yamamoto, Eiji; Kanno, Noriko; Kawai, Sawako; Mizubayashi, Tatsumi; Fukuoka, Shuichi

2015-01-01

Root growth angle (RGA) is an important trait that influences the ability of rice to avoid drought stress. DEEPER ROOTING 1 (DRO1), which is a major quantitative trait locus (QTL) for RGA, is responsible for the difference in RGA between the shallow-rooting cultivar IR64 and the deep-rooting cultivar Kinandang Patong. However, the RGA differences between these cultivars cannot be fully explained by DRO1. The objective of this study was to identify new QTLs for RGA explaining the difference in RGA between these cultivars. By crossing IR64 (which has a non-functional allele of DRO1) with Kinandang Patong (which has a functional allele of DRO1), we developed 26 chromosome segment substitution lines (CSSLs) that carried a particular chromosome segment from Kinandang Patong in the IR64 genetic background. Using these CSSLs, we found only one chromosomal region that was related to RGA: on chromosome 9, which includes DRO1. Using an F2 population derived from a cross between Kinandang Patong and the Dro1-NIL (near isogenic line), which had a functional DRO1 allele in the IR64 genetic background, we identified a new QTL for RGA (DRO3) on the long arm of chromosome 7. DRO3 may only affect RGA in plants with a functional DRO1 allele, suggesting that DRO3 is involved in the DRO1 genetic pathway.

Skill (or lack thereof) of data-model fusion techniques to provide an early warning signal for an approaching tipping point.

PubMed

Singh, Riddhi; Quinn, Julianne D; Reed, Patrick M; Keller, Klaus

2018-01-01

Many coupled human-natural systems have the potential to exhibit a highly nonlinear threshold response to external forcings resulting in fast transitions to undesirable states (such as eutrophication in a lake). Often, there are considerable uncertainties that make identifying the threshold challenging. Thus, rapid learning is critical for guiding management actions to avoid abrupt transitions. Here, we adopt the shallow lake problem as a test case to compare the performance of four common data assimilation schemes to predict an approaching transition. In order to demonstrate the complex interactions between management strategies and the ability of the data assimilation schemes to predict eutrophication, we also analyze our results across two different management strategies governing phosphorus emissions into the shallow lake. The compared data assimilation schemes are: ensemble Kalman filtering (EnKF), particle filtering (PF), pre-calibration (PC), and Markov Chain Monte Carlo (MCMC) estimation. While differing in their core assumptions, each data assimilation scheme is based on Bayes' theorem and updates prior beliefs about a system based on new information. For large computational investments, EnKF, PF and MCMC show similar skill in capturing the observed phosphorus in the lake (measured as expected root mean squared prediction error). EnKF, followed by PF, displays the highest learning rates at low computational cost, thus providing a more reliable signal of an impending transition. MCMC approaches the true probability of eutrophication only after a strong signal of an impending transition emerges from the observations. Overall, we find that learning rates are greatest near regions of abrupt transitions, posing a challenge to early learning and preemptive management of systems with such abrupt transitions.

Skill (or lack thereof) of data-model fusion techniques to provide an early warning signal for an approaching tipping point

PubMed Central

Quinn, Julianne D.; Reed, Patrick M.; Keller, Klaus

2018-01-01

Many coupled human-natural systems have the potential to exhibit a highly nonlinear threshold response to external forcings resulting in fast transitions to undesirable states (such as eutrophication in a lake). Often, there are considerable uncertainties that make identifying the threshold challenging. Thus, rapid learning is critical for guiding management actions to avoid abrupt transitions. Here, we adopt the shallow lake problem as a test case to compare the performance of four common data assimilation schemes to predict an approaching transition. In order to demonstrate the complex interactions between management strategies and the ability of the data assimilation schemes to predict eutrophication, we also analyze our results across two different management strategies governing phosphorus emissions into the shallow lake. The compared data assimilation schemes are: ensemble Kalman filtering (EnKF), particle filtering (PF), pre-calibration (PC), and Markov Chain Monte Carlo (MCMC) estimation. While differing in their core assumptions, each data assimilation scheme is based on Bayes’ theorem and updates prior beliefs about a system based on new information. For large computational investments, EnKF, PF and MCMC show similar skill in capturing the observed phosphorus in the lake (measured as expected root mean squared prediction error). EnKF, followed by PF, displays the highest learning rates at low computational cost, thus providing a more reliable signal of an impending transition. MCMC approaches the true probability of eutrophication only after a strong signal of an impending transition emerges from the observations. Overall, we find that learning rates are greatest near regions of abrupt transitions, posing a challenge to early learning and preemptive management of systems with such abrupt transitions. PMID:29389938

Identifying calcium sources at an acid deposition-impacted spruce forest: A strontium isotope, alkaline earth element multi-tracer approach

USGS Publications Warehouse

Bullen, T.D.; Bailey, S.W.

2005-01-01

Depletion of calcium from forest soils has important implications for forest productivity and health. Ca is available to fine feeder roots from a number of soil organic and mineral sources, but identifying the primary source or changes of sources in response to environmental change is problematic. We used strontium isotope and alkaline earth element concentration ratios of trees and soils to discern the record of Ca sources for red spruce at a base-poor, acid deposition-impacted watershed. We measured 87Sr/86Sr and chemical compositions of cross-sectional stemwood cores of red spruce, other spruce tissues and sequential extracts of co-located soil samples. 87Sr/86Sr and Sr/Ba ratios together provide a tracer of alkaline earth element sources that distinguishes the plant-available fraction of the shallow organic soils from those of deeper organic and mineral soils. Ca/Sr ratios proved less diagnostic, due to within-tree processes that fractionate these elements from each other. Over the growth period from 1870 to 1960, 87Sr/86Sr and Sr/Ba ratios of stemwood samples became progressively more variable and on average trended toward values that considered together are characteristic of the uppermost forest floor. In detail the stemwood chemistry revealed an episode of simultaneous enhanced uptake of all alkaline earth elements during the growth period from 1930 to 1960, coincident with reported local and regional increases in atmospheric inputs of inorganic acidity. We attribute the temporal trends in stemwood chemistry to progressive shallowing of the effective depth of alkaline earth element uptake by fine roots over this growth period, due to preferential concentration of fine roots in the upper forest floor coupled with reduced nutrient uptake by roots in the lower organic and upper mineral soils in response to acid-induced aluminum toxicity. Although both increased atmospheric deposition and selective weathering of Ca-rich minerals such as apatite provide possible alternative explanations of aspects of the observed trends, the chemical buffering capacity of the forest floor-biomass pool limits their effectiveness as causal mechanisms. ?? Springer 2005.

High organic inputs explain shallow and deep SOC storage in a long-term agroforestry system - combining experimental and modeling approaches

NASA Astrophysics Data System (ADS)

Cardinael, Rémi; Guenet, Bertrand; Chevallier, Tiphaine; Dupraz, Christian; Cozzi, Thomas; Chenu, Claire

2018-01-01

Agroforestry is an increasingly popular farming system enabling agricultural diversification and providing several ecosystem services. In agroforestry systems, soil organic carbon (SOC) stocks are generally increased, but it is difficult to disentangle the different factors responsible for this storage. Organic carbon (OC) inputs to the soil may be larger, but SOC decomposition rates may be modified owing to microclimate, physical protection, or priming effect from roots, especially at depth. We used an 18-year-old silvoarable system associating hybrid walnut trees (Juglans regia × nigra) and durum wheat (Triticum turgidum L. subsp. durum) and an adjacent agricultural control plot to quantify all OC inputs to the soil - leaf litter, tree fine root senescence, crop residues, and tree row herbaceous vegetation - and measured SOC stocks down to 2 m of depth at varying distances from the trees. We then proposed a model that simulates SOC dynamics in agroforestry accounting for both the whole soil profile and the lateral spatial heterogeneity. The model was calibrated to the control plot only. Measured OC inputs to soil were increased by about 40 % (+ 1.11 t C ha-1 yr-1) down to 2 m of depth in the agroforestry plot compared to the control, resulting in an additional SOC stock of 6.3 t C ha-1 down to 1 m of depth. However, most of the SOC storage occurred in the first 30 cm of soil and in the tree rows. The model was strongly validated, properly describing the measured SOC stocks and distribution with depth in agroforestry tree rows and alleys. It showed that the increased inputs of fresh biomass to soil explained the observed additional SOC storage in the agroforestry plot. Moreover, only a priming effect variant of the model was able to capture the depth distribution of SOC stocks, suggesting the priming effect as a possible mechanism driving deep SOC dynamics. This result questions the potential of soils to store large amounts of carbon, especially at depth. Deep-rooted trees modify OC inputs to soil, a process that deserves further study given its potential effects on SOC dynamics.

Observations of shallow water marine ambient sound: the low frequency underwater soundscape of the central Oregon coast.

PubMed

Haxel, Joseph H; Dziak, Robert P; Matsumoto, Haru

2013-05-01

A year-long experiment (March 2010 to April 2011) measuring ambient sound at a shallow water site (50 m) on the central OR coast near the Port of Newport provides important baseline information for comparisons with future measurements associated with resource development along the inner continental shelf of the Pacific Northwest. Ambient levels in frequencies affected by surf-generated noise (f < 100 Hz) characterize the site as a high-energy end member within the spectrum of shallow water coastal areas influenced by breaking waves. Dominant sound sources include locally generated ship noise (66% of total hours contain local ship noise), breaking surf, wind induced wave breaking and baleen whale vocalizations. Additionally, an increase in spectral levels for frequencies ranging from 35 to 100 Hz is attributed to noise radiated from distant commercial ship commerce. One-second root mean square (rms) sound pressure level (SPLrms) estimates calculated across the 10-840 Hz frequency band for the entire year long deployment show minimum, mean, and maximum values of 84 dB, 101 dB, and 152 dB re 1 μPa.

Root architecture simulation improves the inference from seedling root phenotyping towards mature root systems

PubMed Central

Zhao, Jiangsan; Rewald, Boris; Leitner, Daniel; Nagel, Kerstin A.; Nakhforoosh, Alireza

2017-01-01

Abstract Root phenotyping provides trait information for plant breeding. A shortcoming of high-throughput root phenotyping is the limitation to seedling plants and failure to make inferences on mature root systems. We suggest root system architecture (RSA) models to predict mature root traits and overcome the inference problem. Sixteen pea genotypes were phenotyped in (i) seedling (Petri dishes) and (ii) mature (sand-filled columns) root phenotyping platforms. The RSA model RootBox was parameterized with seedling traits to simulate the fully developed root systems. Measured and modelled root length, first-order lateral number, and root distribution were compared to determine key traits for model-based prediction. No direct relationship in root traits (tap, lateral length, interbranch distance) was evident between phenotyping systems. RootBox significantly improved the inference over phenotyping platforms. Seedling plant tap and lateral root elongation rates and interbranch distance were sufficient model parameters to predict genotype ranking in total root length with an RSpearman of 0.83. Parameterization including uneven lateral spacing via a scaling function substantially improved the prediction of architectures underlying the differently sized root systems. We conclude that RSA models can solve the inference problem of seedling root phenotyping. RSA models should be included in the phenotyping pipeline to provide reliable information on mature root systems to breeding research. PMID:28168270

Modeling of Near-Surface Leakage and Seepage of CO2 for Risk Characterization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oldenburg, Curtis M.; Unger, Andre A.J.

2004-02-18

The injection of carbon dioxide (CO2) into deep geologic carbon sequestration sites entails risk that CO2 will leak away from the primary storage formation and migrate upwards to the unsaturated zone from which it can seep out of the ground. We have developed a coupled modeling framework called T2CA for simulating CO2 leakage and seepage in the subsurface and in the atmospheric surface layer. The results of model simulations can be used to calculate the two key health, safety, and environmental (HSE) risk drivers, namely CO2 seepage flux and nearsurface CO2 concentrations. Sensitivity studies for a subsurface system with amore » thick unsaturated zone show limited leakage attenuation resulting in correspondingly large CO2 concentrations in the shallow subsurface. Large CO2 concentrations in the shallow subsurface present a risk to plant and tree roots, and to humans and other animals in subsurface structures such as basements or utility vaults. Whereas CO2 concentrations in the subsurface can be high, surfacelayer winds reduce CO2 concentrations to low levels for the fluxes investigated. We recommend more verification and case studies be carried out with T2CA, along with the development of extensions to handle additional scenarios such as calm conditions, topographic effects, and catastrophic surface-layer discharge events.« less

Do Vertical Gradients in Soil Environmental Conditions Regulate Exudation Rates from Peatland Vegetation?

NASA Astrophysics Data System (ADS)

Proctor, C.; He, Y.

2017-12-01

Deposition of carbon belowground via the root exudation pathway is the net of root-borne efflux and influx processes. For select exudates, root have a remarkable ability to actively recapture lost compounds, suggesting that influx mechanisms regulate exudation. However, roots are not the sole sink for root effluxed carbon. Roots compete with solute sorption and microbial uptake, whom are regulated by a unique set of soil environmental conditions. Peatland soil features stark vertical gradients in their physical, chemical, biological, and hydrological properties, which has downstream implications for the relative competitive ability of each actor in root-soil-microbial interactions. This study developed a single root exudate model using the Barber-Cushman approach to examine the radial accumulation of exudates in simulated peatland soil with vertical gradients. The model simulated efflux, influx, solute diffusion, solute mineralization and solid phase sorption mechanisms as depth dependent on bulk density, porosity, tortuosity, buffer power, temperature, and microbial biomass. Deeper peat soil reduced the porosity that permits solute transport, increased tortuosity which lowered the effective diffusion rate, increased solute-solid sorption, and reduced microbial mineralization of effluxed compounds. Slower mineralization rates were partially juxtaposed by increases in sorption, albeit the net removal of effluxed compounds was lower, leading to a larger amount of exudates to remain in the rhizosphere around deeper roots. Increase in the solid phase, and its subsequent constriction of solute migration, lead to a higher accumulation of effluxed compounds on the rhizoplane, up to 1.23x higher than shallow soil. Subsequently, influx mechanisms captured a larger fraction of effluxed compounds (69.06% at -10cm versus 84.8% at -80 cm), reducing net exudation rates from 0.641 to 0.315 nmol cm-1 hr-1 between -10 and -80cm depths. These results suggest that localized environmental conditions around roots can be a considerable influence on root influx and competition for root exudates. The insights provided by this model help provide a better understanding of exudate regulation in peatlands and the quantity and quality of carbon deposited to the methanogen community.

Fort Devens Feasibility Study for Group 1A Suites, Final Feasibility Study Report, Cold Spring Brook Landfill Operable Unit

DTIC Science & Technology

1994-12-01

salinity, and the fact that there are preferred food plants within the AA such as Nymphaea odorata and Brasenia schreberi, which are considered by WET to be...by WET include the substrate type, low salinity, and the fact that there are preferred food plants within the AA such as Nymphaea odorata and Brasenia...describe it as shallow and capable of supporting a dense rooted vascular plant community. Sweet water lily ( Nymphaea odorata ), water shield (Brasenia

Might rock moisture in shallow fractured bedrock underlying hillslopes provide vegetation resilience to future droughts?

NASA Astrophysics Data System (ADS)

Dietrich, W. E.; Dawson, T. E.; Salve, R.; Simonin, K. A.; Oshun, J.; Rempe, D.; Fung, I.

2009-12-01

Hilly and mountainous landscapes are often capped by relatively thin soil that mantles a thicker, but nonetheless relatively shallow fractured bedrock zone. The few studies that have quantitatively explored this near-surface zone have demonstrated that subsurface runoff, saturation overland flow, and pore pressure development are dominated by pathways through the bedrock—not through the soil. Hence, evolution of this weathered fractured zone, and its spatial variation strongly influences hydrologic and geomorphic processes. Here we report findings at a new study site (“Rivendell”) in the South Fork Eel River watershed in the Northern Coastal California area, where periods of essentially no rain can extend 5 to 6 months, yet 60 m tall conifer trees can prosper and continuous baseflow in modest sized drainages can sustain aquatic ecosystems. Dominant vegetation in the region correlates with lithology and we hypothesize that it is the extent of development of the shallow fractured bedrock that controls this relationship. To explore the linkages between climate, vegetation, and hydrology as mediated by bedrock conditions we have instrumented a 4000 m2 steep (32 degree) catchment under old-growth Douglas fir forest with a large number (over 300) of devices including rain gauges, temperature, humidity and soil moisture probes, TDR arrays, sap flow monitors and pressure transducers in wells—all of which report via a wireless solar powered system back to Berkeley for effectively real-time monitoring. Electrical resistivity tomography surveys have been repeatedly performed. Seven deep (up to 30 m) wells along the catchment reveal a ~20 m thick weathered, fractured bedrock zone that tapers downslope to about 7 m. Two years of monitoring show that all water passes through the shallow soil into the bedrock zone where it eventually collects at the base of the fracture zone, forming a dynamic perched groundwater table that generates storm runoff and slowly drops during the summer (controlling river baseflow). Sap flow measurements show strong seasonal response, and flow reversal, i.e. flow returning to the feeding root system at night. Together these data suggest the hypotheses that: 1) in the dry summers trees use “hydraulic lift” to exploit seasonally recharged rock moisture at depth (in the unsaturated zone above the groundwater table) and store this water in the soil in the evening (possibly benefiting lower canopy plants), 2) this process could provide a forest ecosystem resilience to the expanding droughts anticipated for California, and 3) available rock moisture depends on rock type and whether the shallow fractured rock zone develops. Rock moisture is missing from global climate models, and its availability to plants may strongly influence vegetation response and changes in regional climate.

From where does the Amazon forest gets its water?

NASA Astrophysics Data System (ADS)

Miguez-Macho, G.; Fan, Y.

2016-12-01

The Amazon receives abundant annual rainfall but parts of it experience a multi-month dry season. Here we ask: what is the water source that sustains the dry-season ET? Where over the Amazon it is largely local and recent rain (hence ET shutting down in dry season), or past rain that is stored in the deep soils and the groundwater (deep roots tapping deep reservoirs sustaining ET), or is it rain that fell on higher grounds (through topography-driven lateral convergence)? Using synthesis of isotope and other tracer observations and basin-wide inverse modeling (shallow soil, deep soil, with and without groundwater, with and without dynamic rooting depth), we attempt to tease out these components. The results shed light on likely ET sources and how future global change may preferentially impact Amazon ecosystem functioning.

Importance of Mangroves, Seagrass Beds and the Shallow Coral Reef as a Nursery for Important Coral Reef Fishes, Using a Visual Census Technique

NASA Astrophysics Data System (ADS)

Nagelkerken, I.; van der Velde, G.; Gorissen, M. W.; Meijer, G. J.; Van't Hof, T.; den Hartog, C.

2000-07-01

The nursery function of various biotopes for coral reef fishes was investigated on Bonaire, Netherlands Antilles. Length and abundance of 16 commercially important reef fish species were determined by means of visual censuses during the day in six different biotopes: mangrove prop-roots ( Rhizophora mangle) and seagrass beds ( Thalassia testudinum) in Lac Bay, and four depth zones on the coral reef (0 to 3 m, 3 to 5 m, 10 to 15 m and 15 to 20 m). The mangroves, seagrass beds and shallow coral reef (0 to 3 m) appeared to be the main nursery biotopes for the juveniles of the selected species. Mutual comparison between biotopes showed that the seagrass beds were the most important nursery biotope for juvenile Haemulon flavolineatum, H. sciurus, Ocyurus chrysurus, Acanthurus chirurgus and Sparisoma viride, the mangroves for juvenile Lutjanus apodus, L. griseus, Sphyraena barracuda and Chaetodon capistratus, and the shallow coral reef for juvenile H. chrysargyreum, L. mahogoni , A. bahianus and Abudefduf saxatilis. Juvenile Acanthurus coeruleus utilized all six biotopes, while juvenile H. carbonarium and Anisotremus surinamensis were not observed in any of the six biotopes. Although fishes showed a clear preference for a specific nursery biotope, most fish species utilized multiple nursery biotopes simultaneously. The almost complete absence of juveniles on the deeper reef zones indicates the high dependence of juveniles on the shallow water biotopes as a nursery. For most fish species an (partial) ontogenetic shift was observed at a particular life stage from their (shallow) nursery biotopes to the (deeper) coral reef. Cluster analyses showed that closely related species within the families Haemulidae, Lutjanidae and Acanthuridae, and the different size classes within species in most cases had a spatial separation in biotope utilization.

Root architecture simulation improves the inference from seedling root phenotyping towards mature root systems.

PubMed

Zhao, Jiangsan; Bodner, Gernot; Rewald, Boris; Leitner, Daniel; Nagel, Kerstin A; Nakhforoosh, Alireza

2017-02-01

Root phenotyping provides trait information for plant breeding. A shortcoming of high-throughput root phenotyping is the limitation to seedling plants and failure to make inferences on mature root systems. We suggest root system architecture (RSA) models to predict mature root traits and overcome the inference problem. Sixteen pea genotypes were phenotyped in (i) seedling (Petri dishes) and (ii) mature (sand-filled columns) root phenotyping platforms. The RSA model RootBox was parameterized with seedling traits to simulate the fully developed root systems. Measured and modelled root length, first-order lateral number, and root distribution were compared to determine key traits for model-based prediction. No direct relationship in root traits (tap, lateral length, interbranch distance) was evident between phenotyping systems. RootBox significantly improved the inference over phenotyping platforms. Seedling plant tap and lateral root elongation rates and interbranch distance were sufficient model parameters to predict genotype ranking in total root length with an RSpearman of 0.83. Parameterization including uneven lateral spacing via a scaling function substantially improved the prediction of architectures underlying the differently sized root systems. We conclude that RSA models can solve the inference problem of seedling root phenotyping. RSA models should be included in the phenotyping pipeline to provide reliable information on mature root systems to breeding research. © The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Restricting the above ground sink corrects the root/shoot ratio and substantially boosts the yield potential per panicle in field-grown rice (Oryza sativa L.).

PubMed

Nada, Reham M; Abogadallah, Gaber M

2016-04-01

Rice has shallow, weak roots, but it is unknown how much increase in yield potential could be achieved if the root/shoot ratio is corrected. Removing all tillers except the main one, in a japonica (Sakha 101) and an indica (IR64) rice cultivar, instantly increased the root/shoot ratio from 0.21 to 1.16 in Sakha 101 and from 0.16 to 1.46 in IR64. Over 30 days after detillering, the root/shoot ratios of the detillered plants decreased to 0.49 in Sakha 101 and 0.46 in IR64 but remained significantly higher than in the controls. The detillered plants showed two- or fourfold increase in the main tiller fresh weight, as a consequence of more positive midday leaf relative water content (RWC), and consistently higher rates of stomatal conductance and photosynthesis, but not transpiration, compared with the controls. The enhanced photosynthesis in Sakha 101 after detillering resulted from both improved water status and higher Rubisco contents whereas in IR64, increasing the Rubisco content did not contribute to improving photosynthesis. Detillering did not increase the carbohydrate contents of leaves but prevented starch depletion at the end of grain filling. The leaf protein content during vegetative and reproductive stages, the grain filling rate, the number of filled grains per panicle were greatly improved, bringing about 38.3 and 35.9% increase in the harvested grain dry weight per panicle in Sakha 101 and IR64, respectively. We provide evidence that improving the root performance by increasing the root/shoot ratio would eliminate the current limitations to photosynthesis and growth in rice. © 2015 Scandinavian Plant Physiology Society.

Mangrove peat analysis and reconstruction of vegetation history at the Pelican Cays, Belize

USGS Publications Warehouse

McKee, K.L.; Faulkner, P.L.

2000-01-01

The substrate beneath mangrove forests in the Pelican Cays complex is predominately peat composed mainly of mangrove roots. Leaves and wood account for less than 20% of the peat mass. At Cat Cay, the depth of the peat ranges from 0.2 m along the shoreline to 1.65 m in the island center, indicating that the island has expanded horizontally as well as vertically through below-ground, biogenic processes. Mangrove roots thus play a critical role in the soil formation, vertical accretion, and stability of these mangrove cays. The species composition of fossil roots changes markedly with depth: Rhizophora mangle (red mangrove) was the initial colonizer on a coral base, followed by Avicennia germinans (black mangrove), which increased in abundance and expanded radially from the center of the island. The center of the Avicennia stand ultimately died, leaving an unvegetated, shallow pond. The peat thus retains a record of mangrove development, succession, and deterioration in response to sea-level change and concomitant hydroedaphic conditions controlling dispersal, establishment, growth, and mortality of mangroves on oceanic islands in Belize.

The influence of vegetation cover and soil physical properties on deflagration of shallow landslides - Nova Friburgo, RJ / Brazil

NASA Astrophysics Data System (ADS)

de Oliveira Marques, Maria Clara; Silva, Roberta; Fraga, Joana; Luiza Coelho Netto, Ana; Mululo Sato, Anderson

2017-04-01

In 2011, the mountainous region of the State of Rio de Janeiro (Brazil) suffered enormous social and economic losses due to thousands of landslides caused by an extreme rainfall event. The mapping of the scars of these landslides in an area of 421 km2 in the municipality of Nova Friburgo, RJ - Brazil resulted in a total of 3622, and 89% of these scars were located in areas covered by grasses and forests. Despite the unexpected result (64% of scars in forest areas), field evidence has shown that most of the forest fragments in the municipality are in the initial stages of succession and in different states of degradation, evidencing the need for a better understanding of the role of these forests in the detonation and propagation of landslides. Two slope forest areas with different ages (20 and 50 years) were evaluated in relation to the vegetative aspects that influence the stability of the slopes in each area. Hydrological monitoring, including precipitation, interception by manual and automatic method, soil moisture and subsurface flows were performed in two different areas: forest and grass. Soil moisture was monitored by granular matrix sensors and flows by collecting troughs in trenches at depths of 0 cm, 20 cm, 50 cm, 100 cm, 150 cm and 220 cm, which were also analyzed for biomass and length of thick roots (> 2 mm diameter) and thin roots (< 2 mm diameter) and for the soil physical properties (particle size, aggregate stability, porosity and hydraulic conductivity in situ). In the grass area, the lower soil structure in relation to the forest areas makes it difficult to transmit the water through the soil matrix. During the monitoring period, that area preserved the moisture in depths of 100 cm, 150 cm and 220 cm. The fasciculate root system of the grasses increased the infiltration of water at the top of the soil, favouring the formation of more superficial saturation zones in the heavy rains, due to the hydraulic discontinuities. In forest areas, infiltration by preferential paths allows the concentration of water in the depths in which they are terminal increasing the pore water pressure. Soil saturation in this area also occurred in heavy rains, but more deeply due to the rapid movement and redirection of water in depth by tree roots. This process was also responsible for the higher subsurface flows found in the forest, that is, the greater aggregation of the soil, the existence of interconnected macropores, ducts and roots facilitate the transmission of water in depth. Associated with the high rainfall and high relative humidity, these vegetation favoured the formation of saturation zones and increased pore pressures of the water, causing landslides on lands between 0.5 m and 2.0 m. The results of hydraulic conductivity show that the difference (lateritic = 10-4 cm/s; saprolitic = 10-5 cm/s) between the layers of the soil can generate zones of hydraulic discontinuity in extreme rainfall events, which would justify the predominance of shallow translational landslides at these same depths.

A new method of fully three dimensional analysis of stress field in the soil layer of a soil-mantled hillslope

NASA Astrophysics Data System (ADS)

Wu, Y. H.; Nakakita, E.

2017-12-01

Hillslope stability is highly related to stress equilibrium near the top surface of soil-mantled hillslopes. Stress field in a hillslope can also be significantly altered by variable groundwater motion under the rainfall influence as well as by different vegetation above and below the slope. The topographic irregularity, biological effects from vegetation and variable rainfall patterns couple with others to make the prediction of shallow landslide complicated and difficult. In an increasing tendency of extreme rainfall, the mountainous area in Japan has suffered more and more shallow landslides. To better assess shallow landslide hazards, we would like to develop a new mechanically-based method to estimate the fully three-dimensional stress field in hillslopes. The surface soil-layer of hillslope is modelled as a poroelastic medium, and the tree surcharge on the slope surface is considered as a boundary input of stress forcing. The modelling of groundwater motion is involved to alter effective stress state in the soil layer, and the tree root-reinforcement estimated by allometric equations is taken into account for influencing the soil strength. The Mohr-Coulomb failure theory is then used for locating possible yielding surfaces, or says for identifying failure zones. This model is implemented by using the finite element method. Finally, we performed a case study of the real event of massive shallow landslides occurred in Hiroshima in August, 2014. The result shows good agreement with the field condition.

Shallow Investigations of the Deep Seafloor: Quantitative Morphology in the Levant Basin, Eastern Mediterranean

NASA Astrophysics Data System (ADS)

Kanari, M.; Ketter, T.; Tibor, G.; Schattner, U.

2017-12-01

We aim to characterize the seafloor morphology and its shallow sub-surface structures and deformations in the deep part of the Levant basin (eastern Mediterranean) using recently acquired high-resolution shallow seismic reflection data and multibeam bathymetry, which allow quantitative analysis of morphology and structure. The Levant basin at the eastern Mediterranean is considered a passive continental margin, where most of the recent geological processes were related in literature to salt tectonics rooted at the Messinian deposits from 6Ma. We analyzed two sets of recently acquired high-resolution data from multibeam bathymetry and 3.5 kHz Chirp sub-bottom seismic reflection in the deep basin of the continental shelf offshore Israel (water depths up to 2100 m). Semi-automatic mapping of seafloor features and seismic data interpretation resulted in quantitative morphological analysis of the seafloor and its underlying sediment with penetration depth up to 60 m. The quantitative analysis and its interpretation are still in progress. Preliminary results reveal distinct morphologies of four major elements: channels, faults, folds and sediment waves, validated by seismic data. From the spatial distribution and orientation analyses of these phenomena, we identify two primary process types which dominate the formation of the seafloor in the Levant basin: structural and sedimentary. Characterization of the geological and geomorphological processes forming the seafloor helps to better understand the transport mechanisms and the relations between sediment transport and deposition in deep water and the shallower parts of the shelf and slope.

Effect of woody and herbaceous plants on chemical weathering of basalt material

NASA Astrophysics Data System (ADS)

Mark, N.; Dontsova, K.; Barron-Gafford, G. A.

2011-12-01

Worldwide, semi-arid landscapes are transitioning from shallow-rooted grasslands to mixed vegetation savannas composed of deeper-rooted shrubs. These contrasting growth forms differentially drive below-ground processes because they occupy different soil horizons, are differentially stressed by periods of drought, and unequally stimulate soil weathering. Our study aims to determine the effect of woody and herbaceous plants on weathering of granular basalt serving as a model for soil. We established pots with velvet mesquite (Prosopis veluntina), sideoats grama (Bouteloua curtipendula), and bare-soil pots within two temperature treatments in University of Arizona Biosphere 2. The Desert biome served as the ambient temperature treatment, while the Savanna biome was maintained 4°C warmer to simulate projected air temperatures if climate change continues unabated. Rhizon water samplers were installed at a depth of one inch from the soil surface to monitor root zone exudates (total dissolved carbon and nitrogen), dissolved inorganic carbon, and lithogenic elements resulting from basalt weathering. Soil leachates were collected through the course of the experiment. The anion content of the leachates was determined using the ICS-5000 Reagent-Free ion chromatography system. Dissolved carbon and nitrogen were analyzed by combustion using the Shimadzu TOC-VCSH with TN module. Metals and metalloids were measured using inductively coupled plasma mass spectrometry. Irrigation of the pots was varied in time to simulate periods of drought and determine the effect of stress on root exudation. Leachates from all treatments displayed higher pH and electrical conductivity than water used for irrigation indicating weathering. On average, leachates from the potted grasses displayed higher pH and electrical conductivity than mesquites. This agreed with higher concentrations of organic carbon, a measure of root exudation, and inorganic carbon, measure of soil respiration. Both organic acids exuded by plants and respired CO2 have been linked to mineral weathering. Increased weathering in grass treatments also resulted in higher concentrations of plant nutrients. No effect of temperature on plant exudation or basalt weathering was observed in the course of the experiment. This work links physiological plant responses to temperature and water stress by two vegetation types with below-ground processes that result in soil evolution.

Cultivation-Independent and Cultivation-Dependent Analysis of Microbes in the Shallow-Sea Hydrothermal System Off Kueishantao Island, Taiwan: Unmasking Heterotrophic Bacterial Diversity and Functional Capacity.

PubMed

Tang, Kai; Zhang, Yao; Lin, Dan; Han, Yu; Chen, Chen-Tung A; Wang, Deli; Lin, Yu-Shih; Sun, Jia; Zheng, Qiang; Jiao, Nianzhi

2018-01-01

Shallow-sea hydrothermal systems experience continuous fluctuations of physicochemical conditions due to seawater influx which generates variable habitats, affecting the phylogenetic composition and metabolic potential of microbial communities. Until recently, studies of submarine hydrothermal communities have focused primarily on chemolithoautotrophic organisms, however, there have been limited studies on heterotrophic bacteria. Here, fluorescence in situ hybridization, high throughput 16S rRNA gene amplicon sequencing, and functional metagenomes were used to assess microbial communities from the shallow-sea hydrothermal system off Kueishantao Island, Taiwan. The results showed that the shallow-sea hydrothermal system harbored not only autotrophic bacteria but abundant heterotrophic bacteria. The potential for marker genes sulfur oxidation and carbon fixation were detected in the metagenome datasets, suggesting a role for sulfur and carbon cycling in the shallow-sea hydrothermal system. Furthermore, the presence of diverse genes that encode transporters, glycoside hydrolases, and peptidase indicates the genetic potential for heterotrophic utilization of organic substrates. A total of 408 cultivable heterotrophic bacteria were isolated, in which the taxonomic families typically associated with oligotrophy, copiotrophy, and phototrophy were frequently found. The cultivation-independent and -dependent analyses performed herein show that Alphaproteobacteria and Gammaproteobacteria represent the dominant heterotrophs in the investigated shallow-sea hydrothermal system. Genomic and physiological characterization of a novel strain P5 obtained in this study, belonging to the genus Rhodovulum within Alphaproteobacteria, provides an example of heterotrophic bacteria with major functional capacity presented in the metagenome datasets. Collectively, in addition to autotrophic bacteria, the shallow-sea hydrothermal system also harbors many heterotrophic bacteria with versatile genetic potential to adapt to the unique environmental conditions.

Cultivation-Independent and Cultivation-Dependent Analysis of Microbes in the Shallow-Sea Hydrothermal System Off Kueishantao Island, Taiwan: Unmasking Heterotrophic Bacterial Diversity and Functional Capacity

PubMed Central

Tang, Kai; Zhang, Yao; Lin, Dan; Han, Yu; Chen, Chen-Tung A.; Wang, Deli; Lin, Yu-Shih; Sun, Jia; Zheng, Qiang; Jiao, Nianzhi

2018-01-01

Shallow-sea hydrothermal systems experience continuous fluctuations of physicochemical conditions due to seawater influx which generates variable habitats, affecting the phylogenetic composition and metabolic potential of microbial communities. Until recently, studies of submarine hydrothermal communities have focused primarily on chemolithoautotrophic organisms, however, there have been limited studies on heterotrophic bacteria. Here, fluorescence in situ hybridization, high throughput 16S rRNA gene amplicon sequencing, and functional metagenomes were used to assess microbial communities from the shallow-sea hydrothermal system off Kueishantao Island, Taiwan. The results showed that the shallow-sea hydrothermal system harbored not only autotrophic bacteria but abundant heterotrophic bacteria. The potential for marker genes sulfur oxidation and carbon fixation were detected in the metagenome datasets, suggesting a role for sulfur and carbon cycling in the shallow-sea hydrothermal system. Furthermore, the presence of diverse genes that encode transporters, glycoside hydrolases, and peptidase indicates the genetic potential for heterotrophic utilization of organic substrates. A total of 408 cultivable heterotrophic bacteria were isolated, in which the taxonomic families typically associated with oligotrophy, copiotrophy, and phototrophy were frequently found. The cultivation-independent and -dependent analyses performed herein show that Alphaproteobacteria and Gammaproteobacteria represent the dominant heterotrophs in the investigated shallow-sea hydrothermal system. Genomic and physiological characterization of a novel strain P5 obtained in this study, belonging to the genus Rhodovulum within Alphaproteobacteria, provides an example of heterotrophic bacteria with major functional capacity presented in the metagenome datasets. Collectively, in addition to autotrophic bacteria, the shallow-sea hydrothermal system also harbors many heterotrophic bacteria with versatile genetic potential to adapt to the unique environmental conditions. PMID:29527196

The key players of the primary root growth and development also function in lateral roots in Arabidopsis.

PubMed

Tian, Huiyu; Jia, Yuebin; Niu, Tiantian; Yu, Qianqian; Ding, Zhaojun

2014-05-01

The core regulators which are required for primary root growth and development also function in lateral root development or lateral root stem cell niche maintenance. The primary root systems and the lateral root systems are the two important root systems which are vital to the survival of plants. Though the molecular mechanism of the growth and development of both the primary root systems and the lateral root systems have been extensively studied individually in Arabidopsis, there are not so much evidence to show that if both root systems share common regulatory mechanisms. AP2 family transcription factors such as PLT1 (PLETHORA1) and PLT2, GRAS family transcription factors such as SCR (SCARECROW) and SHR (SHORT ROOT) and WUSCHEL-RELATED HOMEOBOX transcription factor WOX5 have been extensively studied and found to be essential for primary root growth and development. In this study, through the expression pattern analysis and mutant examinations, we found that these core regulators also function in lateral root development or lateral root stem cell niche maintenance.

Generalized Lotka—Volterra systems connected with simple Lie algebras

NASA Astrophysics Data System (ADS)

Charalambides, Stelios A.; Damianou, Pantelis A.; Evripidou, Charalambos A.

2015-06-01

We devise a new method for producing Hamiltonian systems by constructing the corresponding Lax pairs. This is achieved by considering a larger subset of the positive roots than the simple roots of the root system of a simple Lie algebra. We classify all subsets of the positive roots of the root system of type An for which the corresponding Hamiltonian systems are transformed, via a simple change of variables, to Lotka-Volterra systems. For some special cases of subsets of the positive roots of the root system of type An, we produce new integrable Hamiltonian systems.

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

PubMed Central

Rellán-Álvarez, Rubén; Lobet, Guillaume; Lindner, Heike; Pradier, Pierre-Luc; Sebastian, Jose; Yee, Muh-Ching; Geng, Yu; Trontin, Charlotte; LaRue, Therese; Schrager-Lavelle, Amanda; Haney, Cara H; Nieu, Rita; Maloof, Julin; Vogel, John P; Dinneny, José R

2015-01-01

Root systems develop different root types that individually sense cues from their local environment and integrate this information with systemic signals. This complex multi-dimensional amalgam of inputs enables continuous adjustment of root growth rates, direction, and metabolic activity that define a dynamic physical network. Current methods for analyzing root biology balance physiological relevance with imaging capability. To bridge this divide, we developed an integrated-imaging system called Growth and Luminescence Observatory for Roots (GLO-Roots) that uses luminescence-based reporters to enable studies of root architecture and gene expression patterns in soil-grown, light-shielded roots. We have developed image analysis algorithms that allow the spatial integration of soil properties, gene expression, and root system architecture traits. We propose GLO-Roots as a system that has great utility in presenting environmental stimuli to roots in ways that evoke natural adaptive responses and in providing tools for studying the multi-dimensional nature of such processes. DOI: http://dx.doi.org/10.7554/eLife.07597.001 PMID:26287479

GLO-Roots: An imaging platform enabling multidimensional characterization of soil-grown root systems

DOE PAGES

Rellan-Alvarez, Ruben; Lobet, Guillaume; Lindner, Heike; ...

2015-08-19

Root systems develop different root types that individually sense cues from their local environment and integrate this information with systemic signals. This complex multi-dimensional amalgam of inputs enables continuous adjustment of root growth rates, direction, and metabolic activity that define a dynamic physical network. Current methods for analyzing root biology balance physiological relevance with imaging capability. To bridge this divide, we developed an integrated-imaging system called Growth and Luminescence Observatory for Roots (GLO-Roots) that uses luminescence-based reporters to enable studies of root architecture and gene expression patterns in soil-grown, light-shielded roots. We have developed image analysis algorithms that allow themore » spatial integration of soil properties, gene expression, and root system architecture traits. We propose GLO-Roots as a system that has great utility in presenting environmental stimuli to roots in ways that evoke natural adaptive responses and in providing tools for studying the multi-dimensional nature of such processes.« less

Longleaf Pine Root System Development and Seedling Quality in Response to Copper Root Pruning and Cavity Size

Treesearch

Mary Anne Sword Sayer; Shi-Jean Susana Sung; James D. Haywood

2011-01-01

Cultural practices that modify root system structure in the plug of container-grown seedlings have the potential to improve root system function after planting. Our objective was to assess how copper root pruning affects the quality and root system development of longleaf pine seedlings grown in three cavity sizes in a greenhouse. Copper root pruning increased seedling...

Ground-water flow in the shallow aquifer system at the Naval Weapons Station Yorktown, Virginia

USGS Publications Warehouse

Smith, Barry S.

2001-01-01

The Environmental Directorate of the Naval Weapons Station Yorktown, Virginia, is concerned about possible contamination of ground water at the Station. Ground water at the Station flows through a shallow system of layered aquifers and leaky confining units. The units of the shallow aquifer system are the Columbia aquifer, the Cornwallis Cave confining unit, the Cornwallis Cave aquifer, the Yorktown confining unit, and the Yorktown-Eastover aquifer. The Eastover-Calvert confining unit separates the shallow aquifer system from deeper confined aquifers beneath the Station. A three-dimensional, finite-difference, ground-water flow model was used to simulate steady-state ground-water flow of the shallow aquifer system in and around the Station. The model simulated ground-water flow from the peninsular drainage divide that runs across the Lackey Plain near the southern end of the Station north to King Creek and the York River and south to Skiffes Creek and the James River. The model was calibrated by minimizing the root mean square error between 4 7 measured and corresponding simulated water levels. The calibrated model was used to determine the ground-water budget and general directions of ground-water flow. A particle-tracking routine was used with the calibrated model to estimate groundwater flow paths, flow rates, and traveltimes from selected sites at the Station. Simulated ground-water flow velocities of the Station-area model were small beneath the interstream areas of the Lackey Plain and Croaker Flat, but increased outward toward the streams and rivers where the hydraulic gradients are larger. If contaminants from the land surface entered the water table at or near the interstream areas of the Station, where hydraulic gradients are smaller, they would migrate more slowly than if they entered closer to the streams or the shores of the rivers where gradients commonly are larger. The ground-water flow simulations indicate that some ground water leaks downward from the water table to the Yorktown confining unit and, where the confining unit is absent, to the Yorktown-Eastover aquifer. The velocities of advective-driven contaminants would decrease considerably when entering the Yorktown confining unit because the hydraulic conductivity of the confining unit is small compared to that of the aquifers. Any contaminants that moved with advective ground-water flow near the groundwater divide of the Lackey Plain would move relatively slowly because the hydraulic gradients are small there. The direction in which the contaminants would move, however, would be determined by precisely where the contaminants entered the water table. The model was not designed to accurately simulate ground-water flow paths through local karst features. Beneath Croaker Flat, ground water flows downward through the Columbia aquifer and the Yorktown confining unit into the Yorktown-Eastover aquifer. Analyses of the movement of simulated particles from two adjacent sites at Croaker Flat indicated that ground-water flow paths were similar at first but diverged and discharged to different tributaries of Indian Field Creek or to the York River. These simulations indicate that complex and possibly divergent flow paths and traveltimes are possible at the Station. Although the Station-area model is not detailed enough to simulate ground-water flow at the scales commonly used to track and remediate contaminants at specific sites, general concepts about possible contaminant migration at the Station can be inferred from the simulations.

Outcome of Endodontic Surgery: A Meta-analysis of the Literature-Part 3: Comparison of Endodontic Microsurgical Techniques with 2 Different Root-end Filling Materials.

PubMed

Kohli, Meetu R; Berenji, Homayon; Setzer, Frank C; Lee, Su-Min; Karabucak, Bekir

2018-06-01

The aim of the present study was to investigate the influence of root-end preparation and filling material on endodontic surgery outcome. A systematic review and meta-analysis was conducted to determine the outcome of resin-based endodontic surgery (RES, the use of high-magnification preparation of a shallow and concave root-end cavity and bonded resin-based root-end filling material) versus endodontic microsurgery (EMS, the use of high-magnification ultrasonic root-end preparation and root-end filling with SuperEBA [Keystone Industries, Gibbstown, NJ], IRM [Dentsply Sirona, York, PA], mineral trioxide aggregate [MTA], or other calcium silicate cements). An exhaustive literature search was conducted to identify prognostic studies on the outcome of root-end surgery. Human studies conducted from 1966 to the end of December 2016 in 5 different languages (ie, English, French, German, Italian, and Spanish) were searched in 4 electronic databases (ie, Medline, Embase, PubMed, and Cochrane Library). Relevant review articles on the subject were scrutinized for cross-references. In addition, 5 dental and medical journals (Journal of Endodontics; International Endodontic Journal; Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontics; Journal of Oral and Maxillofacial Surgery; and International Journal of Oral and Maxillofacial Surgery) were hand checked dating back to 1975. All abstracts were screened by 3 independent reviewers (H.B., M.K., and F.S.). Strict inclusion-exclusion criteria were defined to identify relevant articles. Raw data were extracted from the full-text review of these selected articles independently by each of the 3 reviewers. In case of disagreement, an agreement was reached by discussion, and qualifying articles were assigned to group RES. For EMS, the same search strategy was performed for the time frame October 2009 to December 2016, whereas up to October 2009 the data were obtained from a previous systematic review with identical criteria and search strategy. Weighted pooled success rates and a relative risk assessment between RES and EMS were calculated. To make a comparison between groups, a random effects model was used. Sixty-eight articles were eligible for full-text review. Of these, per strict inclusion exclusion criteria, 14 studies qualified, 3 for RES (n = 862) and 11 for EMS (n = 915). Weighted pooled success rates for RES were 82.20% (95% confidence interval [CI], 0.7965-0.8476) and 94.42% for EMS (95% CI, 0.9295-0.9590). This difference was statistically significant (P < .0005). The probability for success for EMS proved to be significantly greater than the probability for success for RES, providing best available evidence on the influence of cavity preparation with ultrasonic tips and/or SuperEBA (Keystone Industries, Gibbstown, NJ), IRM (Dentsply Sirona, York, PA), MTA, or silicate cements as root-end filling material instead of a shallow cavity preparation and placement of a resin-based material. Additional large-scale randomized clinical trials are needed to assess other predictors of outcome. Copyright © 2018 American Association of Endodontists. Published by Elsevier Inc. All rights reserved.

Desert shrub responses to experimental modification of precipitation seasonality and soil depth: relationship to the two-layer model and ecohydrological niche

USGS Publications Warehouse

Germino, Matthew J.; Reinhardt, Keith

2013-01-01

1. Ecohydrological niches are important for understanding plant community responses to climate shifts, particularly in dry lands. According to the two-layer hypothesis, selective use of deep-soil water increases growth or persistence of woody species during warm and dry summer periods and thereby contributes to their coexistence with shallow-rooted herbs in dry ecosystems. The resource-pool hypothesis further suggests that shallow-soil water benefits growth of all plants while deep-soil water primarily enhances physiological maintenance and survival of woody species. Few studies have directly tested these by manipulating deep-soil water availability and observing the long-term outcomes. 2. We predicted that factors promoting infiltration and storage of water in deep soils, specifically greater winter precipitation and soil depth, would enhance Artemisia tridentata (big sagebrush) in cold, winter-wet/summer-dry desert. Sagebrush responses to 20 years of winter irrigation were compared to summer- or no irrigation, on plots having relatively deep or shallow soils (2 m vs. 1 m depths). 3. Winter irrigation increased sagebrush cover, and crown and canopy volumes, but not density (individuals/plot) compared to summer or no irrigation, on deep-soil plots. On shallow-soil plots, winter irrigation surprisingly decreased shrub cover and size, and summer irrigation had no effect. Furthermore, multiple regression suggested that the variations in growth were related (i) firstly to water in shallow soils (0-0.2 m) and secondly to deeper soils (> 1 m deep) and (ii) more by springtime than by midsummer soil water. Water-use efficiency increased considerably on shallow soils without irrigation and was lowest with winter irrigation. 4. Synthesis. Sagebrush was more responsive to the seasonal timing of precipitation than to total annual precipitation. Factors that enhanced deep-water storage (deeper soils plus more winter precipitation) led to increases in Artemisia tridentata that were consistent with the two-layer hypothesis, and the contribution of shallow water to growth on these plots was consistent with the resource-pool hypothesis. However, shallow-soil water also had negative effects on sagebrush, suggesting an ecohydrological trade-off not considered in these or related theories. The interaction between precipitation timing and soil depth indicates that increased winter precipitation could lead to a mosaic of increases and decreases in A. tridentata across landscapes having variable soil depth.

Potential contribution of groundwater to dry-season ET in the Amazon

NASA Astrophysics Data System (ADS)

Miguez-Macho, Gonzalo; Fan, Ying

2010-05-01

Climate and land ecosystem models simulate vegetation stress in the Amazon forest in the dry season, but observations show enhanced growth in response to higher radiation under less cloudy skies indicating an adequate water supply. The question is: how does the vegetation obtain sufficient water, and what is missing in the models? Shallow model soil and rooting depth is a factor; the ability of roots to move water up and down (hydraulic redistribution) may be another, but another cause may lie in the buffering effect of the groundwater found in nature but absent in models. We present observational and modeling evidence that the vast groundwater store, consequence of high annual rainfall combined with poor drainage in the Amazon, may provide a stable source for dry-season photosynthesis. The water table beneath the Amazon is sufficiently shallow (38% area <5m and 63% area <10m deep) as to contribute >2mm/day to dry-season evapotranspiration, a non-negligible portion of tower-observed flux of 3-4mm/day, the latter including canopy-interception loss and open-water evaporation. This may have important implications to our understanding of Amazonia ecosystem response and feedback to climate change. Current models, lacking groundwater, predict a significant reduction in dry-season photosynthesis under current climate and large-scale dieback under projected future climate converting the Amazon from a net carbon sink to a net source and accelerating warming. If groundwater is considered in the models, the magnitude of the responses and feedbacks may be reduced.

Bacterial interactions in the rhizosphere of seagrass communities in shallow coastal lagoons.

PubMed

Donnelly, A P; Herbert, R A

1998-12-01

Rooted phanerogam communities in the shallow intertidal and subtidal coastal zone represent productive and healthy ecosystems. Inorganic nutrients are assimilated into seagrass biomass. Much of the organic matter resulting from moribund seagrass is rapidly mineralized, principally by bacteria. The microbial community of the rhizosphere is also highly active due to the supply of organic matter released during photosynthesis. This active sediment community plays an important role through carbon, nitrogen and phosphorous cycling in maintaining the stability and productivity of seagrass meadows. Over the last two decades, however, seagrass meadows in European coastal areas have declined due to increasing pollution. As eutrophication advances a trasition occurs from rooted phanerogram dominated communities to planktonic algal blooms and/or cyanobacterial blooms. Such changes represent the decline of a stable, high biodiversity habitat to an unstable one dominated by a few species. These changes of community structure can occur rapidly once the internal nutrient and organic matter control cycles are exceeded. A field investigation was undertaken to establish the spatial distribution of bacterial populations of Zostera noltii colonized and uncolonized sediment in the Bassin d'Arcachon, France. Bacteria were enumerated using both plate count and MPN techniques for different functional groups as well as determining the total bacterial populations present. Nitrogen fixation, ammonification, sulphate reduction rates, as well as alkaline phosphatase activity were also determined. Colonization of the Z. noltii roots and rhizomes was studied by light and scanning electron microscopy. Results confirmed that higher bacterial populations were present in the rhizosphere of Z. noltii compared to uncolonized sediments. Furthermore, electron microscopy identified the rhizome as the main site of colonization for a diverse range of morphological groups of bacteria. Sulphate reducing bacteria were identified as the key group of bacteria involved in N-fixation in the rhizosphere of Z. noltii. The data will be discussed in relation to the role played by the rhizosphere microflora in supplying and mobilising nutrients in Z. noltii. 1998 Society of Applied Microbiology.

Nonlinear modes of snap-through motions of a shallow arch

NASA Astrophysics Data System (ADS)

Breslavsky, I.; Avramov, K. V.; Mikhlin, Yu.; Kochurov, R.

2008-03-01

Nonlinear modes of snap-through motions of a shallow arch are analyzed. Dynamics of shallow arch is modeled by a two-degree-of-freedom system. Two nonlinear modes of this discrete system are treated. The methods of Ince algebraization and Hill determinants are used to study stability of nonlinear modes. The analytical results are compared with the data of the numerical simulations.

The Corinth Rift Laboratory, Greece (CRL) : A Multidisciplinary Near Fault Observatory (NFO) on a Fast Rifting System

NASA Astrophysics Data System (ADS)

Bernard, P.; Lyon-Caen, H.; Deschamps, A.; Briole, P.; Lambotte, S.; Ford, M.; Scotti, O.; Beck, C.; Hubert-Ferrari, A.; Boiselet, A.; Godano, M.; Matrullo, E.; Meyer, N.; Albini, P.; Elias, P.; Nercessian, A.; Katsonopoulou, D.; Papadimitriou, P.; Voulgaris, N.; Kapetanidis, V.; Sokos, E.; Serpetsidaki, A.; el Arem, S.; Dublanchet, P.; Duverger, C.; Makropoulos, K.; Tselentis, A.

2014-12-01

The western rift of Corinth (Greece) is one of the most active tectonic structures of the euro-mediterranean area. Its NS opening rate is 1.5 cm/yr ( strain rate of 10-6/yr) results into a high microseismicity level and a few destructive, M>6 earthquakes per century, activating a system of mostly north dipping normal faults. Since 2001, monitoring arrays of the European Corinth Rift Laboratory (CRL, www.crlab.eu) allowed to better track the mechanical processes at work, with short period and broad band seismometers, cGPS, borehole strainmeters, EM stations, …). The recent (300 kyr) tectonic history has been revealed by onland (uplifted fan deltas and terraces) and offshore geological studies (mapping, shallow seismic, coring), showing a fast evolution of the normal fault system. The microseismicity, dominated by swarms lasting from days to months, mostly clusters in a layer 1 to 3 km thick, between 6 and 9 km in depth, dipping towards north, on which most faults are rooting. The diffusion of the microseismicity suggests its triggering by pore pressure transients, with no or barely detected strain. Despite a large proportion of multiplets, true repeaters seem seldom, suggesting a minor contribution of creep in their triggering, although transient or steady creep is clearly detected on the shallow part of some majors faults. The microseismic layer may thus be an immature, downward growing detachment, and the dominant rifting mechanism might be a mode I, anelastic strain beneath the rift axis , for which a mechanical model is under development. Paleoseismological (trenching, paleoshorelines, turbidites), archeological and historical studies completed the catalogues of instrumental seismicity, motivating attempts of time dependent hazard assessment. The Near Fault Observatory of CRL is thus a multidisciplinary research infrastructure aiming at a better understanding and modeling of multiscale, coupled seismic/aseismic processes on fault systems.

Distinct modes of adventitious rooting in Arabidopsis thaliana.

PubMed

Correa, L da Rocha; Troleis, J; Mastroberti, A A; Mariath, J E A; Fett-Neto, A G

2012-01-01

The literature describes different rooting protocols for Arabidopsis thaliana as models to study adventitious rooting, and results are generally perceived as comparable. However, there is a lack of investigations focusing on the distinct features, advantages and limitations of each method in the study of adventitious rooting with both wild-type (WT) ecotypes and their respective mutants. This investigation was undertaken to evaluate the adventitious rooting process in three different experimental systems, all using A. thaliana, analysing the same rooting parameters after transient exposure to auxin (indole-3-acetic acid) and control conditions: excised leaves, de-rooted plants and etiolated seedlings. The founding tissues and sites of origin of roots differed depending on the system used, whereas all rooting patterns were of the direct type (i.e., without callus formation). None of the systems had an absolute requirement for exogenous auxin, although rooting was enhanced by this phytohormone, with the exception of de-rooted plants, which had adventitious rooting strongly inhibited by exogenous auxin. Root elongation was much favoured in isolated leaves. Auxin-overproducing mutants could not be used in the detached leaf system due to precocious senescence; in the de-rooted plant system, these mutants had a WT-like rooting response, whereas the expression of the 'rooty' phenotype was only evident in the etiolated seedling system. Adventitious rooting of etiolated WT seedlings in the presence of exogenous auxin was inhibited by exogenous flavonoids, which act as auxin transport inhibitors; surprisingly, the flavonoid-deficient mutant chs had a lower rooting response compared to WT. Although Arabidopsis is an excellent model system to study adventitious rooting, physiological and developmental responses differed significantly, underlining the importance of avoiding data generalisation on rooting responses derived from different experimental systems with this species. © 2011 German Botanical Society and The Royal Botanical Society of the Netherlands.

Geochemistry of water in the Fort Union Formation of the northern Powder River basin, southeastern Montana

USGS Publications Warehouse

Lee, Roger W.

1980-01-01

Shallow water in the coal-bearing Fort Union Formation of southeastern Montana was investigated to provide a better understanding of the geochemistry. Springs, wells less than 200 feet deep, and wells greater then 200 feet deep were observed to have different water qualities. Overall, the ground water exists as two systems: a mosaic of shallow, chemically dynamic, and localized recharge-discharge cells superimposed on a deeper, chemically static regional system. Water chemistry is highly variable in the shallow system, whereas sodium and bicarbonate waters characterize the deeper system. Within the shallow system , springs, and wells less than 200 feet deep show predominantly sodium and sulfate enrichment processes from recharge to discharge. These processes are consistent with the observed aquifer mineralogy and aqueous chemistry. However, intermittent mixing with downward moving recharge waters or upward moving deeper waters, and bacterially catalyzed sulfate reduction, may cause apparent reversals in these processes. (USGS)

Geochemistry of water in the Fort Union formation of the northern Powder River basin, southeastern Montana

USGS Publications Warehouse

Lee, Roger W.

1981-01-01

Shallow water in the coal-bearing Paleocene Fort Union Formation of southeastern Montana was investigated to provide a better understanding of its geochemistry. Springs, wells less than 200 feet deep, and wells greater than 200 feet deep were observed to have different water qualities. Overall, the ground water exists as two systems: a mosaic of shallow, chemically dynamic, and localized recharge-discharge cells superimposed on a deeper, chemically static regional system. Water chemistry is highly variable in the shallow system; whereas, waters containing sodium and bicarbonate characterize the deeper system. Within the shallow system, springs and wells less than 200 feet deep show predominantly sodium and sulfate enrichment processes from recharge to discharge. These processes are consistent with the observed aquifer mineralogy and aqueous chemistry. However, intermittent mixing with downward moving recharge waters or upward moving deeper waters, and bacterially catalyzed sulfate reduction, may cause apparent reversals in these processes.

The role of deep nitrogen and dynamic rooting profiles on vegetation dynamics and productivity in response to permafrost thaw and climate change in Arctic tundra

NASA Astrophysics Data System (ADS)

Hewitt, R. E.; Helene, G.; Taylor, D. L.; McGuire, A. D.; Mack, M. C.

2017-12-01

The release of permafrost-derived nitrogen (N) has the potential to fertilize tundra vegetation, modulating plant competition, stimulating productivity, and offsetting carbon losses from thawing permafrost. Dynamic rooting, mycorrhizal interactions, and coupling of N availability and root N uptake have been identified as gaps in ecosystem models. As a first step towards understanding whether Arctic plants can access deep permafrost-derived N, we characterized rooting profiles and quantified acquisition of 15N tracer applied at the permafrost boundary by moist acidic tundra plants subjected to almost three decades of warming at Toolik Lake, Alaska. In the ambient control plots the vegetation biomass is distributed between five plant functional types (PFTs): sedges, evergreen and deciduous shrubs, mosses and in lower abundance, forbs. The warming treatment has resulted in the increase of deciduous shrub biomass and the loss of sedges, evergreen shrubs, and mosses. We harvested roots by depth increment down to the top of the permafrost. Roots were classified by size class and PFT. The average thaw depth in the warmed plots was 58.3 cm ± 6.4 S.E., close to 18 cm deeper than the average thaw depth in the ambient plots (40.8 cm ± 1.8 S.E.). Across treatments the deepest rooting species was Rubus chamaemorus (ambient 40.8 cm ± 1.8 S.E., warmed 50.3 cm ± 9.8 S.E.), a non-mycorrhizal forb, followed by Eriophorum vaginatum, a non-mycorrhizal sedge. Ectomycorrhizal deciduous and ericoid mycorrhizal evergreen shrubs were rooted at more shallow depths. Deeply rooted non-mycorrhizal species had the greatest uptake of 15N tracer within 24 hours across treatments. Tracer uptake was greatest for roots of E. vaginatum in ambient plots and R. chamaemorus in warmed plots. Root profiles were integrated into a process-based ecosystem model coupled with a dynamic vegetation model. Functions modeling dynamic rooting profile relative to thaw depth were implemented for each PFT. The goal of the model simulations is to evaluate the relative effect of deep N acquisition and dynamic rooting profile on site level vegetation productivity. This modeling exercise will contribute to more accurate predictions of vegetation change in the Arctic modulated by belowground plant traits and changing soil resources with warming.

Root anatomy, morphology, and longevity among root orders in Vaccinium corymbosum (Ericaceae).

PubMed

Valenzuela-Estrada, Luis R; Vera-Caraballo, Vivianette; Ruth, Leah E; Eissenstat, David M

2008-12-01

Understanding root processes at the whole-plant or ecosystem scales requires an accounting of the range of functions within a root system. Studying root traits based on their branching order can be a powerful approach to understanding this complex system. The current study examined the highly branched root system of the ericoid plant, Vaccinium corymbosum L. (highbush blueberry) by classifying its root orders with a modified version of the morphometric approach similar to that used in hydrology for stream classification. Root anatomy provided valuable insight into variation in root function across orders. The more permanent portion of the root system occurred in 4th- and higher-order roots. Roots in these orders had radial growth; the lowest specific root length, N:C ratios, and mycorrhizal colonization; the highest tissue density and vessel number; and the coarsest root diameter. The ephemeral portion of the root system was mainly in the first three root orders. First- and 2nd-order roots were nearly anatomically identical, with similar mycorrhizal colonization and diameter, and also, despite being extremely fine, median lifespans were not very short (115-120 d; estimated with minirhizotrons). Our research underscores the value of examining root traits by root order and its implications to understanding belowground processes.

Summer dormancy, drought survival and functional resource acquisition strategies in California perennial grasses

PubMed Central

Balachowski, Jennifer A.; Bristiel, Pauline M.; Volaire, Florence A.

2016-01-01

Background and Aims Evidence suggests drought severity is increasing due to climate change, but strategies promoting severe drought survival in perennial grasses have been seldom explored. This is particularly true of summer dormancy, an adaptation common in summer-dry Mediterranean-type climates. In addition, though theory predicts superior drought survival results in lower potential productivity, studies rarely measure both drought survival and growth under optimal conditions. Methods Physiological and functional ecological approaches were integrated to quantify interspecific variation in foliar and root traits in a suite of eight California perennial grass species. In a glasshouse experiment, summer dormancy, foliar functional trait variation, and seasonal growth and phenology under non-limiting water conditions and dehydration tolerance under progressive drought were quantified. In a second glasshouse study, root functional traits were quantified under non-limiting water conditions in rhizotrons. Key Results Summer dormancy was associated with higher dehydration tolerance, and negatively associated with traits conferring dehydration avoidance. Species with greater summer dormancy were characterized by greater springtime productivity, earlier reproduction, and a shallow and fine root system, which are indicative of dehydration escape. Summer dormancy was associated with an acquisitive, competitive functional strategy in spring, and a conservative strategy in summer. Conclusions Both the escape and acquisitive springtime strategies observed in summer dormant perennial taxa are typically associated with annual grasses. California grasslands were once dominated by perennial species, but have been overtaken by non-native Mediterranean annual grasses, which are expected to be further favoured by climate change. Owing to functional similarity with these exotic annuals, it is suggested that native summer dormant taxa may play an important ecological role in the future of both natural and restored California grasslands. PMID:27325898

Ecohydrology and biogeochemistry of seasonally-dry ecosystems

NASA Astrophysics Data System (ADS)

Feng, X.; Porporato, A. M.

2010-12-01

The composition and the dynamic in various types of seasonally dry ecosystems are largely determined by rainfall seasonality and distribution. The intermittency of rainfall in these ecosystems has played a dominant role in the life cycle of native plants such that phenological events such as growth or reproduction have oftentimes become synchronized with the onset of the dry or the wet season. Characteristic amongst such types of ecosystems are the tropical dry and Mediterranean ecosystems, both of which receive similar amount of precipitation yet are markedly distinct in their synchronization of rainfall fluctuations and temperature. Seasonally dry ecosystems cover more than 16 million square kilometers in the tropics, with short but intense wet seasons followed by long dry seasons and elevated temperature throughout the year. Native vegetation grows during the wet season and adopts dormancy or seasonal deciduousness to cope with the dry season. In the Mediterranean climates, precipitations and temperature are out of phase, with wet temperate winters and hot dry summers. Dimorphic root systems are prevalent, where deep rooted plants exploit the winter recharge while the shallow rooted species take advantage of the infrequent summer rains. Using a stochastic soil moisture model we analyze how temporal shifts, or the lack thereof, in temperature and precipitation patterns affect the development of water stress during the dry season and its feedbacks on soil-plant biogeochemistry. We especially focus on the role of differences in temperature and seasonal potential evapotranspiration between tropical dry and Mediterranean climates. We also compare irrigation needs and the effects of projected climatic conditions in those regions. Understanding how plants adopt different water use strategies in the context of shifted climatic patterns will shed light on how these regions of high biodiversity may cope with rapidly-changing climatic conditions.

Groundwater Controls on Vegetation Composition and Patterning in Mountain Meadows

NASA Astrophysics Data System (ADS)

Loheide, S. P.; Lowry, C.; Moore, C. E.; Lundquist, J. D.

2010-12-01

Mountain meadows are groundwater dependent ecosystems that are hotspots of biodiversity and productivity in the Sierra Nevada of California. Meadow vegetation relies on shallow groundwater during the region’s dry summer growing season. Vegetation composition in this environment is influenced both by 1) oxygen stress that occurs when portions of the root zone are saturated and anaerobic conditions are created that limit root respiration and 2) water stress that occurs when the water table drops and water-limited conditions are created in the root zone. A watershed model that explicitly accounts for snowmelt processes was linked to a fine resolution groundwater flow model of Tuolumne Meadows in Yosemite National Park, CA to simulated spatially distributed water table dynamics. This linked hydrologic model was calibrated to observations from a well observation network for 2006-2008, and validated using data from 2009. A vegetation survey was also conducted at the site in which the three dominant species were identified at more than 200 plots distributed across the meadow. Nonparametric multiplicative regression was performed to create and select the best models for predicting vegetation dominance based on simulated hydrologic regime. The hydrologic niche of three vegetation types representing wet, moist, and dry meadow vegetation communities was best described using both 1) a sum exceedance value calculated as the integral of water table position above a threshold of oxygen stress and 2) a sum deceedance value calculated as the integral of water table position below a threshold of water stress. This linked hydrologic and vegetative modeling framework advances our ability to predict the propagation of human-induced climatic and land-use/-cover changes through the hydrologic system to the ecosystem.

Plant hydraulic traits govern forest water use and growth

NASA Astrophysics Data System (ADS)

Matheny, Ashley; Bohrer, Gil; Fiorella, Rich; Mirfenderesgi, Golnazalsadat

2016-04-01

Biophysical controls at the leaf, stem, and root levels govern plant water acquisition and use. Suites of sometimes co-varying traits afford plants the ability to manage water stress at each of these three levels. We studied the contrasting hydraulic strategies of red oaks (Q. rubra) and red maples (A. rubrum) in northern Michigan, USA. These two species differ in stomatal regulation strategy and xylem architecture, and are thought to root at different depths. Water use was monitored through sap flux, stem water storage, and leaf water potential measurements. Depth of water acquisition was determined on the basis of stable oxygen and hydrogen isotopes from xylem water samples taken from both species. Fifteen years of bole growth records were used to compare the influence of the trees' opposing hydraulic strategies on carbon acquisition and growth. During non-limiting soil moisture conditions, transpiration from red maples typically exceeded that of red oak. However, during a 20% soil dry down, transpiration from red maples decreased by more than 80%, while transpiration from red oaks only fell by 31%. Stem water storage in red maple also declined sharply, while storage in red oaks remained nearly constant. The more consistent isotopic compositions of xylem water samples indicated that oaks can draw upon a steady, deep supply of water which red maples cannot access. Additionally, red maple bole growth correlated strongly with mean annual soil moisture, while red oak bole growth did not. These results indicate that the deeper rooting strategy of red oaks allowed the species to continue transpiration and carbon uptake during periods of intense soil water limitation, when the shallow-rooted red maples ceased transpiration. The ability to root deeply could provide an additional buffer against drought-induced mortality, which may permit some anisohydric species, like red oak, to survive hydrologic conditions that would be expected to favor survival of more isohydric species, like red maple. Advanced plant hydrodynamic models, including the FETCH2 model, are able to capture the effects that traits regulating water loss (e. g. isohydry/anisohydry, conductivity of woody tissue, and rooting depth) impose upon transpiration at scales of a single tree to a whole forest. The integration of detailed knowledge of species-specific hydraulic traits, available through the TRY Global Plant Trait Database, provides biologically relevant constraints for the governing parameters within these modeling systems. By incorporating the effects of plant hydraulic traits at the leaf, stem, and root levels, with mechanistically based predictions of transpiration, growth, and mortality, we can improve simulations of the surface energy budget and global carbon and water balances.

Individual variation of sap-flow rate in large pine and spruce trees and stand transpiration: a pilot study at the central NOPEX site

NASA Astrophysics Data System (ADS)

Čermák, J.; Cienciala, E.; Kučera, J.; Lindroth, A.; Bednářová, E.

1995-06-01

Transpiration in a mixed old stand of sub-boreal forest in the Norunda region (central Sweden) was estimated on the basis of direct measurement of sap flow rate in 24 large Scots pine and Norway spruce trees in July and August 1993. Sap flow rate was measured using the trunk tissue heat balance method based on internal (electric) heating and sensing of temperature. Transpiration was only 0.7 mm day -1 in a relatively dry period in July (i.e. about 20% of potential evaporation) and substantially higher after a rainy period in August. The error of the estimates of transpiration was higher during a dry period (about 13% and 22% in pine and spruce, respectively) and significantly lower (about 9% in both species) during a period of sufficient water supply. Shallow-rooted spruce trees responded much faster to precipitation than deeply rooted pines.

YUCCA9-Mediated Auxin Biosynthesis and Polar Auxin Transport Synergistically Regulate Regeneration of Root Systems Following Root Cutting

PubMed Central

Xu, Dongyang; Miao, Jiahang; Yumoto, Emi; Yokota, Takao; Asahina, Masashi; Watahiki, Masaaki

2017-01-01

Abstract Recovery of the root system following physical damage is an essential issue for plant survival. An injured root system is able to regenerate by increases in lateral root (LR) number and acceleration of root growth. The horticultural technique of root pruning (root cutting) is an application of this response and is a common garden technique for controlling plant growth. Although root pruning is widely used, the molecular mechanisms underlying the subsequent changes in the root system are poorly understood. In this study, root pruning was employed as a model system to study the molecular mechanisms of root system regeneration. Notably, LR defects in wild-type plants treated with inhibitors of polar auxin transport (PAT) or in the auxin signaling mutant auxin/indole-3-acetic acid19/massugu2 were recovered by root pruning. Induction of IAA19 following root pruning indicates an enhancement of auxin signaling by root pruning. Endogenous levels of IAA increased after root pruning, and YUCCA9 was identified as the primary gene responsible. PAT-related genes were induced after root pruning, and the YUCCA inhibitor yucasin suppressed root regeneration in PAT-related mutants. Therefore, we demonstrate the crucial role of YUCCA9, along with other redundant YUCCA family genes, in the enhancement of auxin biosynthesis following root pruning. This further enhances auxin transport and activates downstream auxin signaling genes, and thus increases LR number. PMID:29016906

First report of the successful operation of a side stream supersaturation hypolimnetic oxygenation system in a eutrophic, shallow reservoir.

PubMed

Gerling, Alexandra B; Browne, Richard G; Gantzer, Paul A; Mobley, Mark H; Little, John C; Carey, Cayelan C

2014-12-15

Controlling hypolimnetic hypoxia is a key goal of water quality management. Hypoxic conditions can trigger the release of reduced metals and nutrients from lake sediments, resulting in taste and odor problems as well as nuisance algal blooms. In deep lakes and reservoirs, hypolimnetic oxygenation has emerged as a viable solution for combating hypoxia. In shallow lakes, however, it is difficult to add oxygen into the hypolimnion efficiently, and a poorly designed hypolimnetic oxygenation system could potentially result in higher turbidity, weakened thermal stratification, and warming of the sediments. As a result, little is known about the viability of hypolimnetic oxygenation in shallow bodies of water. Here, we present the results from recent successful tests of side stream supersaturation (SSS), a type of hypolimnetic oxygenation system, in a shallow reservoir and compare it to previous side stream deployments. We investigated the sensitivity of Falling Creek Reservoir, a shallow (Zmax = 9.3 m) drinking water reservoir located in Vinton, Virginia, USA, to SSS operation. We found that the SSS system increased hypolimnetic dissolved oxygen concentrations at a rate of ∼1 mg/L/week without weakening stratification or warming the sediments. Moreover, the SSS system suppressed the release of reduced iron and manganese, and likely phosphorus, from the sediments. In summary, SSS systems hold great promise for controlling hypolimnetic oxygen conditions in shallow lakes and reservoirs. Copyright © 2014 Elsevier Ltd. All rights reserved.

[Three-dimensional morphological modeling and visualization of wheat root system].

PubMed

Tan, Feng; Tang, Liang; Hu, Jun-Cheng; Jiang, Hai-Yan; Cao, Wei-Xing; Zhu, Yan

2011-01-01

Crop three-dimensional (3D) morphological modeling and visualization is an important part of digital plant study. This paper aimed to develop a 3D morphological model of wheat root system based on the parameters of wheat root morphological features, and to realize the visualization of wheat root growth. According to the framework of visualization technology for wheat root growth, a 3D visualization model of wheat root axis, including root axis growth model, branch geometric model, and root axis curve model, was developed firstly. Then, by integrating root topology, the corresponding pixel was determined, and the whole wheat root system was three-dimensionally re-constructed by using the morphological feature parameters in the root morphological model. Finally, based on the platform of OpenGL, and by integrating the technologies of texture mapping, lighting rendering, and collision detection, the 3D visualization of wheat root growth was realized. The 3D output of wheat root system from the model was vivid, which could realize the 3D root system visualization of different wheat cultivars under different water regimes and nitrogen application rates. This study could lay a technical foundation for further development of an integral visualization system of wheat plant.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gebauer, R.L.E.; Ehleringer, J.R.

Variation in the ability to utilize pulses of both water and nitrogen (N) is one possible mechanism allowing the coexistence of species in the cold desert community on the Colorado Plateau. The authors simulated 25-mm precipitation events and used stable isotope tracers ({sup 2}H and {sup 15}N) to follow water and N uptake patterns in six dominant perennials (Artemisia filifolia, Coleogyne ramosissima, Cryptantha flava, Ephedra viridis, Quercus havardii, and Vanclevea stylosa) at different times of the growing season. Water pulse utilization varied on a seasonal basis and was to some extent different among species during the summer. Carbon isotope discriminationmore » was negatively related to both plant use of moisture in upper soil layers and foliar N concentration. Species that were similar in water pulse utilization patterns differed in the natural abundance of {sup 15}N, suggesting partitioning in N sources. All species were able to utilize N pulses after rain events, but there were temporal differences in the response among species. The authors also found that water and N uptake in shallow roots do not necessarily occur simultaneously. Artemisia, Cryptantha, and Quercus showed significant uptake of both water and N from the upper soil layers. In contrast, Coleogyne and Ephedra showed the capacity to utilize the water pulse, but not the N pulse. Vanclevea only took up N. The results indicate that different parts of the root system may be responsible for the acquisition of water and N. Their results also suggest that N and water partitioning could contribute to the coexistence of species in highly variable environments such as the Colorado Plateau desert system.« less

The Development of Advanced Passive Acoustic Monitoring Systems Using microMARS Technology

DTIC Science & Technology

2015-09-30

localization that will be available in a number of configurations for deep and shallow water environments alike. OBJECTIVES The project has two...through two test series, first targeting the GPS synchronized shallow water and then the self-synchronized deep water configurations. The project will...main objectives: 1. Development of all the components of a compact passive acoustic monitoring system suitable both for shallow water moored

A model framework to represent plant-physiology and rhizosphere processes in soil profile simulation models

NASA Astrophysics Data System (ADS)

Vanderborght, J.; Javaux, M.; Couvreur, V.; Schröder, N.; Huber, K.; Abesha, B.; Schnepf, A.; Vereecken, H.

2013-12-01

Plant roots play a crucial role in several key processes in soils. Besides their impact on biogeochemical cycles and processes, they also have an important influence on physical processes such as water flow and transport of dissolved substances in soils. Interaction between plant roots and soil processes takes place at different scales and ranges from the scale of an individual root and its directly surrounding soil or rhizosphere over the scale of a root system of an individual plant in a soil profile to the scale of vegetation patterns in landscapes. Simulation models that are used to predict water flow and solute transport in soil-plant systems mainly focus on the individual plant root system scale, parameterize single-root scale phenomena, and aggregate the root system scale to the vegetation scale. In this presentation, we will focus on the transition from the single root to the root system scale. Using high resolution non-invasive imaging techniques and methods, gradients in soil properties and states around roots and their difference from the bulk soil properties could be demonstrated. Recent developments in plant sciences provide new insights in the mechanisms that control water fluxes in plants and in the adaptation of root properties or root plasticity to changing soil conditions. However, since currently used approaches to simulate root water uptake neither resolve these small scale processes nor represent processes and controls within the root system, transferring this information to the whole soil-plant system scale is a challenge. Using a simulation model that describes flow and transport processes in the soil, resolves flow and transport towards individual roots, and describes flow and transport within the root system, such a transfer could be achieved. We present a few examples that illustrate: (i) the impact of changed rhizosphere hydraulic properties, (ii) the effect of root hydraulic properties and root system architecture, (iii) the regulation of plant transpiration by root-zone produced plant hormones, and (iv) the impact of salt accumulation at the soil-root interface on root water uptake. We further propose a framework how this process knowledge could be implemented in root zone simulation models that do not resolve small scale processes.

Airgun inter-pulse noise field during a seismic survey in an Arctic ultra shallow marine environment.

PubMed

Guan, Shane; Vignola, Joseph; Judge, John; Turo, Diego

2015-12-01

Offshore oil and gas exploration using seismic airguns generates intense underwater pulses that could cause marine mammal hearing impairment and/or behavioral disturbances. However, few studies have investigated the resulting multipath propagation and reverberation from airgun pulses. This research uses continuous acoustic recordings collected in the Arctic during a low-level open-water shallow marine seismic survey, to measure noise levels between airgun pulses. Two methods were used to quantify noise levels during these inter-pulse intervals. The first, based on calculating the root-mean-square sound pressure level in various sub-intervals, is referred to as the increment computation method, and the second, which employs the Hilbert transform to calculate instantaneous acoustic amplitudes, is referred to as the Hilbert transform method. Analyses using both methods yield similar results, showing that the inter-pulse sound field exceeds ambient noise levels by as much as 9 dB during relatively quiet conditions. Inter-pulse noise levels are also related to the source distance, probably due to the higher reverberant conditions of the very shallow water environment. These methods can be used to quantify acoustic environment impacts from anthropogenic transient noises (e.g., seismic pulses, impact pile driving, and sonar pings) and to address potential acoustic masking affecting marine mammals.

Contrasting water use pattern of introduced and native plants in an alpine desert ecosystem, Northeast Qinghai-Tibet Plateau, China.

PubMed

Wu, Huawu; Li, Xiao-Yan; Jiang, Zhiyun; Chen, Huiying; Zhang, Cicheng; Xiao, Xiong

2016-01-15

Plant water use patterns reflect the complex interactions between different functional types and environmental conditions in water-limited ecosystems. However, the mechanisms underlying the water use patterns of plants in the alpine desert of the Qinghai-Tibet Plateau remain poorly understood. This study investigated seasonal variations in the water sources of herbs (Carex moorcroftii, Astragalus adsurgens) and shrubs (Artemisia oxycephala, Hippophae rhamnoides) using stable oxygen-18 isotope methods. The results indicated that the native herbs (C. moorcroftii, A. adsurgens) and one of the shrubs (A. oxycephala) mainly relied on water from the shallow layer (0-30 cm) throughout the growing season, while the introduced shrub (H. rhamnoides) showed plasticity in switching between water from shallow and deep soil layers depending on soil water availability. All studied plants primarily depended on water from shallow soil layers early in the season. The differences of water use patterns between the introduced and native plants are closely linked with the range of active root zones when competing for water. Our findings will facilitate the mechanistic understanding of plant-soil-water relations in alpine desert ecosystems and provide information for screening introduced species for sand fixation. Copyright © 2015 Elsevier B.V. All rights reserved.

Volcanology of Tuzo pipe (Gahcho Kué cluster) — Root-diatreme processes re-interpreted

NASA Astrophysics Data System (ADS)

Seghedi, I.; Maicher, D.; Kurszlaukis, S.

2009-11-01

The Middle Cambrian (~ 540 Ma) Gahcho Kué Kimberlite Field is situated about 275 km ENE of Yellowknife, NWT, Canada. The kimberlites were emplaced into 2.6 Ga Archean granitic rocks of the Yellowknife Supergroup. Four larger kimberlite bodies (5034, Tesla, Tuzo, and Hearne) as well as a number of smaller pipes and associated sheets occur in the field. In plan view, the Tuzo pipe has a circular outline at the surface, and it widens towards deeper levels. The pipe infill consists of several types of coherent and fragmental kimberlite facies. Coherent or apparent coherent (possibly welded) kimberlite facies dominate at depth, but also occur at shallow levels, as dikes intruded late in the eruptive sequence or individual coherent kimberlite clasts. The central and shallower portions of the pipe consist of several fragmental kimberlite varieties that are texturally classified as Tuffisitic Kimberlites. The definition, geometry and extent of the geological units are complex and zones controlled by vertical elements are most significant. The fluidal outlines of some of the coherent kimberlite clasts suggest that at least some are the product of disruption of magma that was in a semi-plastic state or even of welded material. Ragged clasts at low levels are inferred to form part of a complex peperite-like system that intrudes the base of the root zone. A variable, often high abundance of local wall-rock xenoliths between and within the kimberlite phases is observed, varying in size from sub-millimeter to several tens of meters. Wall-rock fragments are common at all locations within the pipe but are especially frequent in a domain with a belt-like geometry between 120 and 200 m depth in the pipe. Steeply outward-dipping bedded deposits made up of wall-rock fragments occur in deep levels of the pipe and are especially common under the downward-widening roof segments. The gradational contact relationships of these deposits with the surrounding kimberlite-bearing rocks as well as their location suggest that they formed more-or-less in situ. Different breccia facies inside the pipe suggest an origin by slumping, grain flows, rock fall or pyroclastic deposition. The shape and facies architecture of the Tuzo pipe suggests that the studied section of the pipe lies at a root zone-diatreme transitional structural level. Composite coherent kimberlite clasts imply that recycling processes were active over time, while reworked wall-rock rich deposits and ductily-deformed clasts of welded kimberlite point to the presence of temporary cavities in the root zone. The emplacement of the Tuzo pipe did not occur in a single, violent explosion, but involved repetitive volcanic explosions alternating with periods of relative quiescence. The observed features are typical of phreatomagmatic processes, which may include phases of less-explosive magmatic activity.

A Pipeline for 3D Digital Optical Phenotyping Plant Root System Architecture

NASA Astrophysics Data System (ADS)

Davis, T. W.; Shaw, N. M.; Schneider, D. J.; Shaff, J. E.; Larson, B. G.; Craft, E. J.; Liu, Z.; Kochian, L. V.; Piñeros, M. A.

2017-12-01

This work presents a new pipeline for digital optical phenotyping the root system architecture of agricultural crops. The pipeline begins with a 3D root-system imaging apparatus for hydroponically grown crop lines of interest. The apparatus acts as a self-containing dark room, which includes an imaging tank, motorized rotating bearing and digital camera. The pipeline continues with the Plant Root Imaging and Data Acquisition (PRIDA) software, which is responsible for image capturing and storage. Once root images have been captured, image post-processing is performed using the Plant Root Imaging Analysis (PRIA) command-line tool, which extracts root pixels from color images. Following the pre-processing binarization of digital root images, 3D trait characterization is performed using the next-generation RootReader3D software. RootReader3D measures global root system architecture traits, such as total root system volume and length, total number of roots, and maximum rooting depth and width. While designed to work together, the four stages of the phenotyping pipeline are modular and stand-alone, which provides flexibility and adaptability for various research endeavors.

Simulating the fate of water in field soil crop environment

NASA Astrophysics Data System (ADS)

Cameira, M. R.; Fernando, R. M.; Ahuja, L.; Pereira, L.

2005-12-01

This paper presents an evaluation of the Root Zone Water Quality Model(RZWQM) for assessing the fate of water in the soil-crop environment at the field scale under the particular conditions of a Mediterranean region. The RZWQM model is a one-dimensional dual porosity model that allows flow in macropores. It integrates the physical, biological and chemical processes occurring in the root zone, allowing the simulation of a wide spectrum of agricultural management practices. This study involved the evaluation of the soil, hydrologic and crop development sub-models within the RZWQM for two distinct agricultural systems, one consisting of a grain corn planted in a silty loam soil, irrigated by level basins and the other a forage corn planted in a sandy soil, irrigated by sprinklers. Evaluation was performed at two distinct levels. At the first level the model capability to fit the measured data was analyzed (calibration). At the second level the model's capability to extrapolate and predict the system behavior for conditions different than those used when fitting the model was assessed (validation). In a subsequent paper the same type of evaluation is presented for the nitrogen transformation and transport model. At the first level a change in the crop evapotranspiration (ETc) formulation was introduced, based upon the definition of the effective leaf area, resulting in a 51% decrease in the root mean square error of the ETc simulations. As a result the simulation of the root water uptake was greatly improved. A new bottom boundary condition was implemented to account for the presence of a shallow water table. This improved the simulation of the water table depths and consequently the soil water evolution within the root zone. The soil hydraulic parameters and the crop variety specific parameters were calibrated in order to minimize the simulation errors of soil water and crop development. At the second level crop yield was predicted with an error of 1.1 and 2.8% for grain and forage corn, respectively. Soil water was predicted with an efficiency ranging from 50 to 95% for the silty loam soil and between 56 and 72% for the sandy soil. The purposed calibration procedure allowed the model to predict crop development, yield and the water balance terms, with accuracy that is acceptable in practical applications for complex and spatially variable field conditions. An iterative method was required to account for the strong interaction between the different model components, based upon detailed experimental data on soils and crops.

Soil resistivity over root area ratio, soil humidity, and bulk density: laboratory tests

NASA Astrophysics Data System (ADS)

Guastini, Enrico; Giambastiani, Yamuna; Preti, Federico

2015-04-01

Knowledge about root system distribution covers an important role in slope shallow stability stud-ies, as this factor grants an increase in soil geotechnical properties (soil cohesion and friction an-gle) and determines a different underground water circulation. Published studies (Amato et al., 2008 and 2011; Censini et al., 2014) about in situ application of ERT (Electrical Resistivity Tomo-graphy) analysis show how the root presence affects the measurable soil resistivity values, confirm-ing the suitability to investigate the application of such technique, aiming to estimate root density in soil with an indirect and non-invasive method. This study, laboratory-based and led on reconstructed samples in controlled condition, aim to find a correlation between the resistivity variations and the various factors that can affect them (humid-ity, bulk density, presence of foreign bodies, temperature). The tests involved a clay-loam soil (USDA classification) taken from Quaracchi (Florence, Italy), in an experimental fir-wood (Picea abies) owned by the Department of Agricultural, Food and For-estry System, Florence University, a previously chosen site for field ERT applications. The row ma-terial has been dried out in a lab stove, grounded and sieved at 2 mm, and then placed in a lexan box (30 x 20 x 20 cm) without compaction. Inside the sample have been inserted 3 series of 4 iron electrodes, insulated along the shaft and with the conductive end placed at three different depth: 2 cm from surface, in the middle of the sample and in contact with the bottom of the box; resistivity measures are conducted on the three levels using a Syscal R2 with electrodes connected in a dipole-dipole configuration. Root presence is simulated inserting bamboo spits (simple geometry, replicable "R.A.R.") in varying number from 0 to 16 in every area between two contiguous electrodes. The tests are repeated in time, monitoring the natural variations in humidity (evapotranspiration) and bulk density (compac-tion). The first results show an increase of resistivity with the decrease of mean humidity that follows a potential trend; data measured in the spitted sample can be statistically considered as a different population in respect to the data from the bare earth sample, giving credit to the hypothesis that the wooden spit presence could be indirectly quantified from geoelectric data. Acknowledgements Italian Research Project of Relevant Interest (PRIN2010-2011), prot. 20104ALME4, National network for monitoring, modeling, and sustainable management of erosion processes in agricultural land and hilly-mountainous area

Channel response to a new hydrological regime in southwestern Australia

NASA Astrophysics Data System (ADS)

Callow, J. N.; Smettem, K. R. J.

2007-02-01

The Kent River flows from semi-arid headwaters in the agricultural (wheatbelt) region of Western Australia to a wetter and forested lower-catchment. It is set in an atypical fluvial environment, with rainfall decreasing inland towards a low-relief upper catchment. Replacement of native deep-rooted perennial vegetation with shallow-rooted seasonal crops has altered the hydrology of the upper catchment. Clearing for agriculture has also increased recharge of regional groundwater systems causing groundwater to rise and mobilise salt stores. This has increased stream salinity which has degradation riparian vegetation and decreased flow resistance. Elevated groundwater has also affected streamflow, increasing flow duration and annual discharge. The altered hydrological regime has affected geomorphic stability, resulting in channel responses that include incision and removal of uncohesive material. Channel response is variable, showing a high dependence on channel morphotype, channel boundary material and severity of salinity (degree of vegetation degradation). Response in confined reaches bounded by sandy material has been characterised by minor lateral bank erosion. In the fine-grained, wider, low-gradient reaches, mid-channel islands have been stripped of sandy sediment where vegetation has degraded. Following an initial period of high erosion rates in these reaches, the channel is now slowly adjusting to a new set of boundary conditions. The variable response has significant implications for management of salt affected rivers in southwestern Australia.

Root Systems of Individual Plants, and the Biotic and Abiotic Factors Controlling Their Depth and Distribution: a Synthesis Using a Global Database.

NASA Astrophysics Data System (ADS)

Tumber-Davila, S. J.; Schenk, H. J.; Jackson, R. B.

2017-12-01

This synthesis examines plant rooting distributions globally, by doubling the number of entries in the Root Systems of Individual Plants database (RSIP) created by Schenk and Jackson. Root systems influence many processes, including water and nutrient uptake and soil carbon storage. Root systems also mediate vegetation responses to changing climatic and environmental conditions. Therefore, a collective understanding of the importance of rooting systems to carbon sequestration, soil characteristics, hydrology, and climate, is needed. Current global models are limited by a poor understanding of the mechanisms affecting rooting, carbon stocks, and belowground biomass. This improved database contains an extensive bank of records describing the rooting system of individual plants, as well as detailed information on the climate and environment from which the observations are made. The expanded RSIP database will: 1) increase our understanding of rooting depths, lateral root spreads and above and belowground allometry; 2) improve the representation of plant rooting systems in Earth System Models; 3) enable studies of how climate change will alter and interact with plant species and functional groups in the future. We further focus on how plant rooting behavior responds to variations in climate and the environment, and create a model that can predict rooting behavior given a set of environmental conditions. Preliminary results suggest that high potential evapotranspiration and seasonality of precipitation are indicative of deeper rooting after accounting for plant growth form. When mapping predicted deep rooting by climate, we predict deepest rooting to occur in equatorial South America, Africa, and central India.

Biological Dimensions of Crack Morphology in Dryland Soils

NASA Astrophysics Data System (ADS)

DeCarlo, K. F.; Spiegel, M.; Caylor, K. K.

2014-12-01

Macropores and cracks have an integral role in soil hydrology, and the physicochemical factors that induce them have been the subject of much laboratory research. How these processes translate to field soils, however, is often obfuscated by the biological elements present that complicate its formation and dynamics. In this study, we investigated the biological influence of herbivores and vegetation on 3D crack morphology in a dryland swelling soil (black cotton/vertisol). Fieldwork was conducted at and near the Kenya Long-Term Exclosure Experiment (KLEE) plots in Mpala, central Kenya, where three different soil regions were identified: highly vegetated areas, animal trails, and termite mounds. Crack networks were physically characterized by pouring liquid resin into the soil and excavating them when dry, after which they were imaged and quantified using medical magnetic resonance imaging (MRI). Cracking intensity of each cast was corrected via soil moisture and bulk density measurements at 5 cm intervals over 30 cm. 3D characterization of the soil system shows that mechanical compaction is a major influence in the formation of extensive and deep cracks in animal trails, with megaherbivores (e.g. elephants) inducing the most extreme cracks. Bioturbation is seen as a major influence in the formation of shallower cracks in termite mounds, as termites loosen and aerate the soil and reduce the soil's cohesive properties. Highly vegetated soils show a large degree of variability: small, disconnected soil patches induced by vegetative cover and a larger root network results in smaller and shallower cracks, but full vegetative cover induces deep and irregular cracks, possibly due to diverted rainfall. Our results highlight the intricate connections between the biology and physics that dictate soil processes in a complex soil system at the field scale.

The Importance of Juvenile Root Traits for Crop Yields

NASA Astrophysics Data System (ADS)

White, Philip; Adu, Michael; Broadley, Martin; Brown, Lawrie; Dupuy, Lionel; George, Timothy; Graham, Neil; Hammond, John; Hayden, Rory; Neugebauer, Konrad; Nightingale, Mark; Ramsay, Gavin; Thomas, Catherine; Thompson, Jacqueline; Wishart, Jane; Wright, Gladys

2014-05-01

Genetic variation in root system architecture (RSA) is an under-exploited breeding resource. This is partly a consequence of difficulties in the rapid and accurate assessment of subterranean root systems. However, although the characterisation of root systems of large plants in the field are both time-consuming and labour-intensive, high-throughput (HTP) screens of root systems of juvenile plants can be performed in the field, glasshouse or laboratory. It is hypothesised that improving the root systems of juvenile plants can accelerate access to water and essential mineral elements, leading to rapid crop establishment and, consequently, greater yields. This presentation will illustrate how aspects of the juvenile root systems of potato (Solanum tuberosum L.) and oilseed rape (OSR; Brassica napus L.) correlate with crop yields and examine the reasons for such correlations. It will first describe the significant positive relationships between early root system development, phosphorus acquisition, canopy establishment and eventual yield among potato genotypes. It will report the development of a glasshouse assay for root system architecture (RSA) of juvenile potato plants, the correlations between root system architectures measured in the glasshouse and field, and the relationships between aspects of the juvenile root system and crop yields under drought conditions. It will then describe the development of HTP systems for assaying RSA of OSR seedlings, the identification of genetic loci affecting RSA in OSR, the development of mathematical models describing resource acquisition by OSR, and the correlations between root traits recorded in the HTP systems and yields of OSR in the field.

Shallow peatland ecohydrology - the control of peat depth on moss productivity

NASA Astrophysics Data System (ADS)

Dixon, Simon; Kettridge, Nicholas; Moore, Paul; Devito, Kevin; Tilak, Amey; Petrone, Rich; Mendoza, Carl; Waddington, Mike

2017-04-01

Northern peatlands represent an important sink in the global carbon cycle. Shallow peatlands and marginal connective wetlands can be essential components of many northern peatland landscape mosaics, playing a vital role in landscape connectivity and wider landscape hydrology. However the ecohydrological function of these shallow, marginal systems has been largely overlooked, with peatland hydrology research focused on relatively deep bog systems. In order to predict landscape scale wetland function and its vulnerability to climate change we need to understand how these shallow connective systems function. The balance between moss productivity and water loss provide a key component of these systems, as water use efficiency controls the rate of moss growth and thus controls the amount of atmospheric carbon sequestered in peat. Understanding how productivity of shallow peatland systems responds to changes in evaporative stress will aid predictions of peatland landscape hydrological function in a changing climate. To determine the factors influencing peat productivity, water balance simulations using Hydrus 1-D were conducted over annual growing seasons for different soil profile depths, compositions and antecedent moisture conditions. Our results demonstrate a bimodal distribution of peatland responses; either primarily conserving water by limiting evapotranspiration or, maximizing productivity. For sustained periods of evaporative stress, shallow marginal systems are least able to buffer periods of evaporative stress due to limited labile water storage, and will limit evaporation, conserve water and be less productive. Conversely, where present, both deep water storage and a shallow initial water table prolong the onset of high vegetative stress, thus maximizing moss productivity. However, a total depth of 0.8 m is identified as the threshold above which increasing peat depth has no further effect on changing vegetative stress response and thus landscape function. These results are important as moss productivity, along with rate of organic matter decay are the two principle factors controlling the build-up of peat, and therefore sequestration of carbon. With a predicted increase in the frequency and size of rain events in northern latitudes our results indicate the productivity of shallow wetland systems may increase, but greater moisture availability will increase the likelihood they remain as wetlands in a changing climate.

Functional Metagenomic Investigations of Microbial Communities in a Shallow-Sea Hydrothermal System

PubMed Central

Tang, Kai; Liu, Keshao; Jiao, Nianzhi; Zhang, Yao; Chen, Chen-Tung Arthur

2013-01-01

Little is known about the functional capability of microbial communities in shallow-sea hydrothermal systems (water depth of <200 m). This study analyzed two high-throughput pyrosequencing metagenomic datasets from the vent and the surface water in the shallow-sea hydrothermal system offshore NE Taiwan. This system exhibited distinct geochemical parameters. Metagenomic data revealed that the vent and the surface water were predominated by Epsilonproteobacteria (Nautiliales-like organisms) and Gammaproteobacteria ( Thiomicrospira -like organisms), respectively. A significant difference in microbial carbon fixation and sulfur metabolism was found between the vent and the surface water. The chemoautotrophic microorganisms in the vent and in the surface water might possess the reverse tricarboxylic acid cycle and the Calvin−Bassham−Benson cycle for carbon fixation in response to carbon dioxide highly enriched in the environment, which is possibly fueled by geochemical energy with sulfur and hydrogen. Comparative analyses of metagenomes showed that the shallow-sea metagenomes contained some genes similar to those present in other extreme environments. This study may serve as a basis for deeply understanding the genetic network and functional capability of the microbial members of shallow-sea hydrothermal systems. PMID:23940820

Rhizoslides: paper-based growth system for non-destructive, high throughput phenotyping of root development by means of image analysis.

PubMed

Le Marié, Chantal; Kirchgessner, Norbert; Marschall, Daniela; Walter, Achim; Hund, Andreas

2014-01-01

A quantitative characterization of root system architecture is currently being attempted for various reasons. Non-destructive, rapid analyses of root system architecture are difficult to perform due to the hidden nature of the root. Hence, improved methods to measure root architecture are necessary to support knowledge-based plant breeding and to analyse root growth responses to environmental changes. Here, we report on the development of a novel method to reveal growth and architecture of maize root systems. The method is based on the cultivation of different root types within several layers of two-dimensional, large (50 × 60 cm) plates (rhizoslides). A central plexiglass screen stabilizes the system and is covered on both sides with germination paper providing water and nutrients for the developing root, followed by a transparent cover foil to prevent the roots from falling dry and to stabilize the system. The embryonic roots grow hidden between a Plexiglas surface and paper, whereas crown roots grow visible between paper and the transparent cover. Long cultivation with good image quality up to 20 days (four fully developed leaves) was enhanced by suppressing fungi with a fungicide. Based on hyperspectral microscopy imaging, the quality of different germination papers was tested and three provided sufficient contrast to distinguish between roots and background (segmentation). Illumination, image acquisition and segmentation were optimised to facilitate efficient root image analysis. Several software packages were evaluated with regard to their precision and the time investment needed to measure root system architecture. The software 'Smart Root' allowed precise evaluation of root development but needed substantial user interference. 'GiaRoots' provided the best segmentation method for batch processing in combination with a good analysis of global root characteristics but overestimated root length due to thinning artefacts. 'WhinRhizo' offered the most rapid and precise evaluation of root lengths in diameter classes, but had weaknesses with respect to image segmentation and analysis of root system architecture. A new technique has been established for non-destructive root growth studies and quantification of architectural traits beyond seedlings stages. However, automation of the scanning process and appropriate software remains the bottleneck for high throughput analysis.

Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems

PubMed Central

2013-01-01

This paper presents an original spit-and-combine imaging procedure that enables the complete vectorization of complex root systems grown in rhizotrons. The general principle of the method is to (1) separate the root system into a small number of large pieces to reduce root overlap, (2) scan these pieces one by one, (3) analyze separate images with a root tracing software and (4) combine all tracings into a single vectorized root system. This method generates a rich dataset containing morphological, topological and geometrical information of entire root systems grown in rhizotrons. The utility of the method is illustrated with a detailed architectural analysis of a 20-day old maize root system, coupled with a spatial analysis of water uptake patterns. PMID:23286457

Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems.

PubMed

Lobet, Guillaume; Draye, Xavier

2013-01-04

: This paper presents an original spit-and-combine imaging procedure that enables the complete vectorization of complex root systems grown in rhizotrons. The general principle of the method is to (1) separate the root system into a small number of large pieces to reduce root overlap, (2) scan these pieces one by one, (3) analyze separate images with a root tracing software and (4) combine all tracings into a single vectorized root system. This method generates a rich dataset containing morphological, topological and geometrical information of entire root systems grown in rhizotrons. The utility of the method is illustrated with a detailed architectural analysis of a 20-day old maize root system, coupled with a spatial analysis of water uptake patterns.

The Succession Problem in the People’s Republic of China.

DTIC Science & Technology

1985-06-01

Kung Yen Chiu" (Studies in Chinese Communism) is a monthly publication by the Nationalist Chinese on Taiwan and "Cheng, J. Chester" is a personal name...beans on a beanstalk fire, Came a plaintive voice from the pot, 0 Why, since we sprang from the selfsame root, "- should you kill me with anger hot...someone of shallow experience (a rookie, or "wet behind the ears"). Literally, it means that "the smell of your mother’s milk is still fresh on you ." Most

High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development.

PubMed

Clark, Randy T; Famoso, Adam N; Zhao, Keyan; Shaff, Jon E; Craft, Eric J; Bustamante, Carlos D; McCouch, Susan R; Aneshansley, Daniel J; Kochian, Leon V

2013-02-01

High-throughput phenotyping of root systems requires a combination of specialized techniques and adaptable plant growth, root imaging and software tools. A custom phenotyping platform was designed to capture images of whole root systems, and novel software tools were developed to process and analyse these images. The platform and its components are adaptable to a wide range root phenotyping studies using diverse growth systems (hydroponics, paper pouches, gel and soil) involving several plant species, including, but not limited to, rice, maize, sorghum, tomato and Arabidopsis. The RootReader2D software tool is free and publicly available and was designed with both user-guided and automated features that increase flexibility and enhance efficiency when measuring root growth traits from specific roots or entire root systems during large-scale phenotyping studies. To demonstrate the unique capabilities and high-throughput capacity of this phenotyping platform for studying root systems, genome-wide association studies on rice (Oryza sativa) and maize (Zea mays) root growth were performed and root traits related to aluminium (Al) tolerance were analysed on the parents of the maize nested association mapping (NAM) population. © 2012 Blackwell Publishing Ltd.

Root evolution at the base of the lycophyte clade: insights from an Early Devonian lycophyte

PubMed Central

Matsunaga, Kelly K. S.; Tomescu, Alexandru M. F.

2016-01-01

Background and Aims The evolution of complex rooting systems during the Devonian had significant impacts on global terrestrial ecosystems and the evolution of plant body plans. However, detailed understanding of the pathways of root evolution and the architecture of early rooting systems is currently lacking. We describe the architecture and resolve the structural homology of the rooting system of an Early Devonian basal lycophyte. Insights gained from these fossils are used to address lycophyte root evolution and homology. Methods Plant fossils are preserved as carbonaceous compressions at Cottonwood Canyon (Wyoming), in the Lochkovian–Pragian (∼411 Ma; Early Devonian) Beartooth Butte Formation. We analysed 177 rock specimens and documented morphology, cuticular anatomy and structural relationships, as well as stratigraphic position and taphonomic conditions. Key Results The rooting system of the Cottonwood Canyon lycophyte is composed of modified stems that bear fine, dichotomously branching lateral roots. These modified stems, referred to as root-bearing axes, are produced at branching points of the above-ground shoot system. Root-bearing axes preserved in growth position exhibit evidence of positive gravitropism, whereas the lateral roots extend horizontally. Consistent recurrence of these features in successive populations of the plant preserved in situ demonstrates that they represent constitutive structural traits and not opportunistic responses of a flexible developmental programme. Conclusions This is the oldest direct evidence for a rooting system preserved in growth position. These rooting systems, which can be traced to a parent plant, include some of the earliest roots known to date and demonstrate that substantial plant–substrate interactions were under way by Early Devonian time. The morphological relationships between stems, root-bearing axes and roots corroborate evidence that positive gravitropism and root identity were evolutionarily uncoupled in lycophytes, and challenge the hypothesis that roots evolved from branches of the above-ground axial system, suggesting instead that lycophyte roots arose as a novel organ. PMID:26921730

Sustainable intensive thermal use of the shallow subsurface-a critical view on the status quo.

PubMed

Vienken, T; Schelenz, S; Rink, K; Dietrich, P

2015-01-01

Thermal use of the shallow subsurface for heat generation, cooling, and thermal energy storage is increasingly gaining importance in reconsideration of future energy supplies. Shallow geothermal energy use is often promoted as being of little or no costs during operation, while simultaneously being environmentally friendly. Hence, the number of installed systems has rapidly risen over the last few decades, especially among newly built houses. While the carbon dioxide reduction potential of this method remains undoubted, concerns about sustainability and potential negative effects on the soil and groundwater due to an intensified use have been raised-even as far back as 25 years ago. Nevertheless, consistent regulation and management schemes for the intensified thermal use of the shallow subsurface are still missing-mainly due to a lack of system understanding and process knowledge. In the meantime, large geothermal applications, for example, residential neighborhoods that are entirely dependent up on shallow geothermal energy use or low enthalpy aquifer heat storage, have been developed throughout Europe. Potential negative effects on the soil and groundwater due to an intensive thermal use of the shallow subsurface as well as the extent of potential system interaction still remain unknown. © 2014, National Ground Water Association.

Verification of radiocesium decontamination from farmlands by plants in Fukushima.

PubMed

Kobayashi, Daisuke; Okouchi, Toshiyasu; Yamagami, Mutsumi; Shinano, Takuro

2014-01-01

The purpose of this study was to verify radiocesium decontamination from Fukushima farmland by plants and to screen plants useful for phytoremediation. Thirteen species from three families (Asteraceae, Fabaceae, and Poaceae) of crops were grown in shallow and deeply cultivated fields (0-8 and 0-15 cm plowing, respectively). To change plowing depth was expected to make different contacting zone between root system and radiocesium in soil. The radioactivity values of the plants due to the radiocesium ¹³⁴Cs and ¹³⁷Cs were 22-179 and 29-225 Bq kg dry weight⁻¹, respectively. The ¹³⁴Cs and ¹³⁷Cs transfer factors for plants grown in the shallow field ranged from 0.021 to 0.12 and fro 0.019 to 0.13, respectively, with the geometric means of 0.051 and 0.057, respectively. The ¹³⁴Cs and ¹³⁷Cs transfer factors for plants grown in the deep field ranged from 0.019 to 0.13 and from 0.022 to 0.13, respectively, with the geometric means of 0.045 and 0.063, respectively. Although a reducing ratio was calculated to evaluate the decrease in radiocesium from contaminated soil during cultivation (i.e., phytoremediation ability), no plant species resulted in a remarkable decrease in radiocesium in soil among the tested crops. These results should be followed up for several years and further analyses are required to evaluate whether the phytoremediation technique is applicable to radioactively contaminated farmlands.

Farm water budgets for semiarid irrigated floodplains of northern New Mexico: characterizing the surface water-groundwater interactions

NASA Astrophysics Data System (ADS)

Gutierrez, K. Y.; Fernald, A.; Ochoa, C. G.; Guldan, S. J.

2013-12-01

KEY WORDS - Hydrology, Water budget, Deep percolation, Surface water-Groundwater interactions. With the recent projections for water scarcity, water balances have become an indispensable water management tool. In irrigated floodplains, deep percolation from irrigation can represent one of the main aquifer recharge sources. A better understanding of surface water and groundwater interactions in irrigated valleys is needed for properly assessing the water balances in these systems and estimating potential aquifer recharge. We conducted a study to quantify the parameters and calculate the water budgets in three flood irrigated hay fields with relatively low, intermediate and, high water availability in northern New Mexico. We monitored different hydrologic parameters including total amount of water applied, change in soil moisture, drainage below the effective root zone, and shallow water level fluctuations in response to irrigation. Evapotranspiration was calculated from weather station data collected in-situ using the Samani-Hargreaves. Previous studies in the region have estimated deep percolation as a residual parameter of the water balance equation. In this study, we used both, the water balance method and actual measurements of deep percolation using passive lysimeters. Preliminary analyses for the three fields show a relatively rapid movement of water through the upper 50 cm of the vadose zone and a quick response of the shallow aquifer under flood irrigation. Further results from this study will provide a better understanding of surface water-groundwater interactions in flood irrigated valleys in northern New Mexico.

Geochemistry and hydrology of a calcareous fen within the Savage Fen wetlands complex, Minnesota, USA

USGS Publications Warehouse

Komor, S.C.

1994-01-01

Savage Fen is a wetlands complex at the base of north-facing bluffs in the Minnesota River Valley. The complex includes 27.8 hectares of calcareous fen that host rare calciphile plants whose populations are declining in Minnesota. Water and sediment compositions in the calcareous fen were studied to gain a better understanding of the hydrologie System that sustains the rare vegetation. Groundwater in the fen is a calcium-magnesium-bicarbonate type with circumneutral pH values. The groundwater composition is the resuit of interactions among water, dissolved and gaseous carbon species, carbonates, and ion exchangers. Shallow groundwater is distinguished from deep groundwater by smaller concentrations of chloride, sulfate, magnesium, and sodium, and larger concentrations of calcium, bicarbonate, hydrogen sulfide, and ammonium. Magnesian calcite is the prevalent carbonate in unconsolidated sedimentary fill beneath the fen and is an important source and sink for dissolved calcium, magnesium, and inorganic carbon. Calcite concentrations just below the water table are small because aerobic and anaerobic oxidation of organic matter increase the partial pressure of carbon dioxide (PCO2), decrease pH, and cause calcite to dissolve. Thick calcite accumulations just above the water table, in the root zone of calciphile plants, result from water table fluctuations and attendant changes in PCO2. Groundwater beneath Savage Fen recharges in lakes and ponds south of the fen and upwells to the surface within the fen. Water at the water table is a mixture of upwelling groundwater and water near the surface that flows downslope from higher elevations in the fen. Changes in oxygen and hydrogen isotope compositions of shallow groundwater indicate that the proportion of upwelling groundwater in shallow groundwater decreases downgradient in the calcareous fen. Encroachment of reed grasses into the calcareous fen may reflect human-caused disturbances in the recharge area.

Root production method system

Treesearch

Wayne Lovelace

2002-01-01

The RPM system (Root Production Method) is a multistep production system of container tree production that places primary emphasis on the root system because the root system ultimately determines the tree's survival and performance in its outplanted environment. This particular container production system has been developed to facilitate volume production, in a...

Multiple shallow level sill intrusions coupled with hydromagmatic explosive eruptions marked the initial phase of Ferrar large igneous province magmatism in northern Victoria Land, Antarctica

USGS Publications Warehouse

Viereck-Goette, L.; Schöner, R.; Bomfleur, B.; Schneider, J.

2007-01-01

Field data gathered during GANOVEX IX (2005/2006) in Northern Victoria Land, Antarctica, indicate that volcaniclastic deposits of phreatomagmatic eruptions (so-called Exposure Hill Type events) are intercalated with fluvial deposits of Triassic-Jurassic age at two stratigraphic levels. Abundant scoriaceous spatter (locally welded) indicates a hawaiian/strombolian component. Breccia-filled diatremes, from which volcaniclastic deposits were sourced, are rooted in sills which intruded wet sediments. The deposits are thus subaerial expressions of initial Ferrar magmatism involving intrusion of multiple shallow-level sills. Due to magma-sediment interaction abundant clastic dikes are developed that intrude the sediments and sills. All igneous components in the volcaniclastic deposits are andesitic in composition, as are the chilled margins of the sills. They are more differentiated than the basaltic andesites of the younger effusive section of Kirkpatrick plateau lavas which in northern Victoria Land start with pillow lavas and small volume lava flows from volcanic necks.

Broadband calibration of the R/V Marcus G. Langseth four-string seismic sources

NASA Astrophysics Data System (ADS)

Tolstoy, M.; Diebold, J.; Doermann, L.; Nooner, S.; Webb, S. C.; Bohnenstiehl, D. R.; Crone, T. J.; Holmes, R. C.

2009-08-01

The R/V Marcus G. Langseth is the first 3-D seismic vessel operated by the U.S. academic community. With up to a four-string, 36-element source and four 6-km-long solid state hydrophone arrays, this vessel promises significant new insights into Earth science processes. The potential impact of anthropogenic sound sources on marine life is an important topic to the marine seismic community. To ensure that operations fully comply with existing and future marine mammal permitting requirements, a calibration experiment was conducted in the Gulf of Mexico in 2007-2008. Results are presented from deep (˜1.6 km) and shallow (˜50 m) water sites, obtained using the full 36-element (6600 cubic inches) seismic source. This array configuration will require the largest safety radii, and the deep and shallow sites provide two contrasting operational environments. Results show that safety radii and the offset between root-mean-square and sound exposure level measurements were highly dependent on water depth.

Sediment dynamics in a large shallow lake characterized by seasonal flood pulse in Southeast Asia.

PubMed

Siev, Sokly; Yang, Heejun; Sok, Ty; Uk, Sovannara; Song, Layheang; Kodikara, Dilini; Oeurng, Chantha; Hul, Seingheng; Yoshimura, Chihiro

2018-08-01

Most of studies on sediment dynamics in stable shallow lakes focused on the resuspension process as it is the dominant process. However, understanding of sediment dynamics in a shallow lake influenced by flood pulse is unclear. We tested a hypothesis that floodplain vegetation plays as a significant role in lessening the intensity of resuspension process in a shallow lake characterized by the flood pulse system. Therefore, this study aimed to investigate sediment dynamics in this type of shallow lake. The target was Tonle Sap Lake (TSL), which is a large shallow lake influenced by a flood pulse system of Mekong River located in Southeast Asia. An extensive and seasonal sampling survey was conducted to measure total suspended solid (TSS) concentrations, sedimentation and resuspension rates in TSL and its 4 floodplain areas. The study revealed that sedimentation process was dominant (TSS ranged: 3-126mgL -1 ) in the high water period (September-December) while resuspension process was dominant (TSS ranged: 4-652mgL -1 ) only in the low water period (March-June). In addition, floodplain vegetation reduced the resuspension of sediment (up to 26.3%) in water. The implication of the study showed that resuspension is a seasonally dominant process in shallow lake influenced by the flood pulse system at least for the case of TSL. Copyright © 2018 Elsevier B.V. All rights reserved.

Interacting vegetative and thermal contributions to water movement in desert soil

USGS Publications Warehouse

Garcia, C.A.; Andraski, Brian J.; Stonestrom, David A.; Cooper, C.A.; Šimůnek, J.; Wheatcraft, S.W.

2011-01-01

Thermally driven water-vapor flow can be an important component of total water movement in bare soil and in deep unsaturated zones, but this process is often neglected when considering the effects of soil–plant–atmosphere interactions on shallow water movement. The objectives of this study were to evaluate the coupled and separate effects of vegetative and thermal-gradient contributions to soil water movement in desert environments. The evaluation was done by comparing a series of simulations with and without vegetation and thermal forcing during a 4.7-yr period (May 2001–December 2005). For vegetated soil, evapotranspiration alone reduced root-zone (upper 1 m) moisture to a minimum value (25 mm) each year under both isothermal and nonisothermal conditions. Variations in the leaf area index altered the minimum storage values by up to 10 mm. For unvegetated isothermal and nonisothermal simulations, root-zone water storage nearly doubled during the simulation period and created a persistent driving force for downward liquid fluxes below the root zone (total net flux ~1 mm). Total soil water movement during the study period was dominated by thermally driven vapor fluxes. Thermally driven vapor flow and condensation supplemented moisture supplies to plant roots during the driest times of each year. The results show how nonisothermal flow is coupled with plant water uptake, potentially influencing ecohydrologic relations in desert environments.

Patterns of nocturnal rehydration in root tissues of Vaccinium corymbosum L. under severe drought conditions

PubMed Central

Valenzuela-Estrada, Luis R.; Richards, James H.; Diaz, Andres; Eissensat, David M.

2009-01-01

Although roots in dry soil layers are commonly rehydrated by internal hydraulic redistribution during the nocturnal period, patterns of tissue rehydration are poorly understood. Rates of nocturnal rehydration were examined in roots of different orders in Vaccinium corymbosum L. ‘Bluecrop’ (Northern highbush blueberry) grown in a split-pot system with one set of roots in relatively moist soil and the other set of roots in dry soil. Vaccinium is noted for a highly branched and extremely fine root system. It is hypothesized that nocturnal root tissue rehydration would be slow, especially in the distal root orders because of their greater hydraulic constraints (smaller vessel diameters and fewer number of vessels). Vaccinium root hydraulic properties delayed internal water movement. Even when water was readily available to roots in the wet soil and transpiration was minimal, it took a whole night-time period of 12 h for the distal finest roots (1st to 4th order) under dry soil conditions to reach the same water potentials as fine roots in moist soil (1st to 4th order). Even though roots under dry soil equilibrated with roots in moist soil, the equilibrium point reached before sunrise was about –1.2 MPa, indicating that tissues were not fully rehydrated. Using a single-branch root model, it was estimated that individual roots exhibiting the lowest water potentials in dry soil were 1st order roots (distal finest roots of the root system). However, considered at the branch level, root orders with the highest hydraulic resistances corresponded to the lowest orders of the permanent root system (3rd-, 4th-, and 5th-order roots), thus indicating possible locations of hydraulic safety control in the root system of this species. PMID:19188275

Patterns of nocturnal rehydration in root tissues of Vaccinium corymbosum L. under severe drought conditions.

PubMed

Valenzuela-Estrada, Luis R; Richards, James H; Diaz, Andres; Eissensat, David M

2009-01-01

Although roots in dry soil layers are commonly rehydrated by internal hydraulic redistribution during the nocturnal period, patterns of tissue rehydration are poorly understood. Rates of nocturnal rehydration were examined in roots of different orders in Vaccinium corymbosum L. 'Bluecrop' (Northern highbush blueberry) grown in a split-pot system with one set of roots in relatively moist soil and the other set of roots in dry soil. Vaccinium is noted for a highly branched and extremely fine root system. It is hypothesized that nocturnal root tissue rehydration would be slow, especially in the distal root orders because of their greater hydraulic constraints (smaller vessel diameters and fewer number of vessels). Vaccinium root hydraulic properties delayed internal water movement. Even when water was readily available to roots in the wet soil and transpiration was minimal, it took a whole night-time period of 12 h for the distal finest roots (1st to 4th order) under dry soil conditions to reach the same water potentials as fine roots in moist soil (1st to 4th order). Even though roots under dry soil equilibrated with roots in moist soil, the equilibrium point reached before sunrise was about -1.2 MPa, indicating that tissues were not fully rehydrated. Using a single-branch root model, it was estimated that individual roots exhibiting the lowest water potentials in dry soil were 1st order roots (distal finest roots of the root system). However, considered at the branch level, root orders with the highest hydraulic resistances corresponded to the lowest orders of the permanent root system (3rd-, 4th-, and 5th-order roots), thus indicating possible locations of hydraulic safety control in the root system of this species.

Rethinking Volcanic Plumbing Systems: The Prevalence of Offset Magma Reservoirs at Holocene Volcanoes

NASA Astrophysics Data System (ADS)

Lerner, A. H.; Karlstrom, L.; Hurwitz, S.; Anderson, K. R.; Ebmeier, S. K.

2016-12-01

Mechanical models of volcanic overpressure and interpretations of volcanic deposits are generally rooted in the classic paradigm of a magma reservoir being located directly beneath the main topographic high and central conduit of a volcano. We test this framework against recent decades of research on volcanic deformation, seismic tomography, earthquake hypocenter locations, and magnetotellurics, which have provided unprecedented geophysical views of volcanic plumbing systems. In a literature survey of Holocene strato- and shield volcanoes in arc, backarc, continental rift, and intraplate settings, we find that shallow to mid-crustal (< 20 km) magma reservoirs are equally likely to be laterally offset from principle volcanic edifices (n = 20) as they are to be centrally located beneath volcanic topographic highs (n = 19). We classify offset reservoirs as having imaged or modeled centroids that are at least 2 km laterally offset from the central volcanic edifice. The scale and geometry of offset magma reservoirs range widely, with a number of systems having discrete reservoirs laterally offset up to 15 km from the main volcanic edifice, at depths of 2 to 15 km. Other systems appear to have inclined magmatic reservoirs and/or fluid transport zones that continuously extend from beneath the main edifice to lateral distances up to 20 km, at depths of 3 to 18 km. Additionally, over a third of the studied systems have small, centrally located shallow magma or fluid reservoirs at depths of 1 to 5 km. Overall, we find that offset magma reservoirs are more common than is classically perceived, and offset reservoirs are more prevalent in intermediate to evolved stratovolcanoes (19 of 28) than in basaltic shield volcanoes (2 of 7). The reason for the formation of long-lived edifices that are offset from their source magma reservoir(s) is an open question; correlation to regional principal stresses or local tectonics, edifice size, lithology, and morphology, and climate may provide insights into this phenomenon. The commonality of offset magma reservoirs warrants reassessing the ways that volcanic systems have been traditionally modeled and monitored, which are principally focused around the topographic edifice, but may be missing critical features associated with lateral offset reservoirs and more complex conduit geometries.

Mine-hunting dolphins of the Navy

NASA Astrophysics Data System (ADS)

Moore, Patrick W.

1997-07-01

Current counter-mine and obstacle avoidance technology is inadequate, and limits the Navy's capability to conduct shallow water (SW) and very shallow water (VSW) MCM in support of beach assaults by Marine Corps forces. Without information as to the location or density of mined beach areas, it must be assumed that if mines are present in one area then they are present in all areas. Marine mammal systems (MMS) are an unusual, effective and unique solution to current problems of mine and obstacle hunting. In the US Navy Mine Warfare Plan for 1994-1995 Marine Mammal Systems are explicitly identified as the Navy's only means of countering buried mines and the best means for dealing with close-tethered mines. The dolphins in these systems possess a biological sonar specifically adapted for their shallow and very shallow water habitat. Research has demonstrated that the dolphin biosonar outperforms any current hardware system available for SW and VSW applications. This presentation will cover current Fleet MCM systems and future technology application to the littoral region.

Using thermodynamics to assess biotic and abiotic impediments to root water uptake

NASA Astrophysics Data System (ADS)

Bechmann, Marcel; Hildebrandt, Anke; Kleidon, Axel

2016-04-01

Root water uptake has been the subject of extensive research, dealing with understanding the processes limiting transpiration and understanding strategies of plants to avoid water stress. Many of those studies use models of water flow from the soil through the plant into the atmosphere to learn about biotic and abiotic factors affecting plant water relations. One important question in this context is to identify those processes that are most limiting to water transport, and specifically whether these processes lie within the plant or the soil? Here, we propose to use a thermodynamic formulation of root water uptake to answer this question. The method allows us to separate the energy exported at the root collar into a sum of energy fluxes related to all processes along the flow path, notably including the effect of increasing water retention in drier soils. Evaluation of the several contributions allows us to identify and rank the processes by how much these impede water flow from the soil to the atmosphere. The application of this approach to a complex 3-dimensional root water uptake model reveals insights on the role of root versus soil resistances to limit water flow. We investigate the efficiency of root water uptake in an ensemble of root systems with varying root hydraulic properties. While root morphology is kept the same, root radial and axial resistances are artificially varied. Starting with entirely young systems (uptake roots, high radial, low axial conductance) we increasingly add older roots (transport roots, high axial, low radial conductance) to improve transport within root systems. This yields a range of root hydraulic architectures, where the extremes are limited either by radial uptake capacity or low capacity to transport water along the root system. We model root water uptake in this range of root systems with a 3-dimensional root water uptake model in two different soils, applying constant flux boundary conditions in a dry down experiment and evaluate energy fluxes afterwards. The results show that a minimum of energy is exported in mixed root systems, but a wide range of root systems act near the optimum. A great loss of efficiency only occurs in the extreme cases (only young or only old roots). In all systems near the optimum root water uptake is impeded equally by abiotic and biotic factors in moist conditions, whereas abiotic factors become the limiting factor in dry conditions. The abiotic factors depend on the soil type and are either due to the water retention function or water flow towards individual roots. Small changes in the distribution of root resistance shift the impediments from radial to axial flow path within the root, but without much affecting overall energy export. This suggests that abiotic factors are a dominant control for efficient root water uptake, while morphology only has a comparatively smaller effect, as long as the root system contains a minimum mixture of uptake and transport roots.

Can diversity in root architecture explain plant water use efficiency? A modeling study

PubMed Central

Tron, Stefania; Bodner, Gernot; Laio, Francesco; Ridolfi, Luca; Leitner, Daniel

2015-01-01

Drought stress is a dominant constraint to crop production. Breeding crops with adapted root systems for effective uptake of water represents a novel strategy to increase crop drought resistance. Due to complex interaction between root traits and high diversity of hydrological conditions, modeling provides important information for trait based selection. In this work we use a root architecture model combined with a soil-hydrological model to analyze whether there is a root system ideotype of general adaptation to drought or water uptake efficiency of root systems is a function of specific hydrological conditions. This was done by modeling transpiration of 48 root architectures in 16 drought scenarios with distinct soil textures, rainfall distributions, and initial soil moisture availability. We find that the efficiency in water uptake of root architecture is strictly dependent on the hydrological scenario. Even dense and deep root systems are not superior in water uptake under all hydrological scenarios. Our results demonstrate that mere architectural description is insufficient to find root systems of optimum functionality. We find that in environments with sufficient rainfall before the growing season, root depth represents the key trait for the exploration of stored water, especially in fine soils. Root density, instead, especially near the soil surface, becomes the most relevant trait for exploiting soil moisture when plant water supply is mainly provided by rainfall events during the root system development. We therefore concluded that trait based root breeding has to consider root systems with specific adaptation to the hydrology of the target environment. PMID:26412932

Can diversity in root architecture explain plant water use efficiency? A modeling study.

PubMed

Tron, Stefania; Bodner, Gernot; Laio, Francesco; Ridolfi, Luca; Leitner, Daniel

2015-09-24

Drought stress is a dominant constraint to crop production. Breeding crops with adapted root systems for effective uptake of water represents a novel strategy to increase crop drought resistance. Due to complex interaction between root traits and high diversity of hydrological conditions, modeling provides important information for trait based selection. In this work we use a root architecture model combined with a soil-hydrological model to analyze whether there is a root system ideotype of general adaptation to drought or water uptake efficiency of root systems is a function of specific hydrological conditions. This was done by modeling transpiration of 48 root architectures in 16 drought scenarios with distinct soil textures, rainfall distributions, and initial soil moisture availability. We find that the efficiency in water uptake of root architecture is strictly dependent on the hydrological scenario. Even dense and deep root systems are not superior in water uptake under all hydrological scenarios. Our results demonstrate that mere architectural description is insufficient to find root systems of optimum functionality. We find that in environments with sufficient rainfall before the growing season, root depth represents the key trait for the exploration of stored water, especially in fine soils. Root density, instead, especially near the soil surface, becomes the most relevant trait for exploiting soil moisture when plant water supply is mainly provided by rainfall events during the root system development. We therefore concluded that trait based root breeding has to consider root systems with specific adaptation to the hydrology of the target environment.

Differential priming of soil carbon driven by soil depth and root impacts on carbon availability

DOE Office of Scientific and Technical Information (OSTI.GOV)

de Graaff, Marie-Anne; Jastrow, Julie D.; Gillette, Shay

2013-11-15

Enhanced root-exudate inputs can stimulate decomposition of soil carbon (C) by priming soil microbial activity, but the mechanisms controlling the magnitude and direction of the priming effect remain poorly understood. With this study we evaluated how differences in soil C availability affect the impact of simulated root exudate inputs on priming. We conducted a 60-day laboratory incubation with soils collected (60 cm depth) from under six switchgrass (Panicum virgatum) cultivars. Differences in specific root length (SRL) among cultivars were expected to result in small differences in soil C inputs and thereby create small differences in the availability of recent labilemore » soil C; whereas soil depth was expected to create large overall differences in soil C availability. Soil cores from under each cultivar (roots removed) were divided into depth increments of 0–10, 20–30, and 40–60 cm and incubated with addition of either: (1) water or (2) 13C-labeled synthetic root exudates (0.7 mg C/g soil). We measured CO2 respiration throughout the experiment. The natural difference in 13C signature between C3 soils and C4 plants was used to quantify cultivar-induced differences in soil C availability. Amendment with 13C-labeled synthetic root-exudate enabled evaluation of SOC priming. Our experiment produced three main results: (1) switchgrass cultivars differentially influenced soil C availability across the soil profile; (2) small differences in soil C availability derived from recent root C inputs did not affect the impact of exudate-C additions on priming; but (3) priming was greater in soils from shallow depths (relatively high total soil C and high ratio of labile-to-stable C) compared to soils from deep depths (relatively low total soil C and low ratio of labile-to-stable C). These findings suggest that the magnitude of the priming effect is affected, in part, by the ratio of root exudate C inputs to total soil C and that the impact of changes in exudate inputs on the priming of SOC is regulated differently in surface soil compared to subsoil.« less

Root growth and water relations of oak and birch seedlings.

PubMed

Osonubi, O; Davies, W J

1981-01-01

First year seedlings of English oak (Quercus Cobur) and silver birch (Betula pendula) were subjected to pressure-volume analysis to investigate the water potential components and cell wall properties of single leaves. It was hoped that this rapid-drying technique would differentiate between reductions in plant solute potential resulting from dehydration and the effects of solute accumulation.Comparison of results from these experiments with those of slow drying treatments (over a number of days) with plants growing in tubes of soil, indicated that some solute accumulation may have occurred in drying oak leaves. High leaf turgor and leaf conductance were maintained for a significant period of the drying cycle. Roots of well-watered oak plants extended deep into the soil profile, and possibly as a result of solute regulation and therefore turgor maintenance, root growth of unwatered plants was greater than that of their well-watered counterparts. This was particularly the case deep in the profile. As a result of deep root penetration, water deep in the soil core was used by oak plants to maintain plant turgor, and quite low soil water potentials were recorded in the lower soil segments.Root growth of well-watered birch seedlings was prolific but roots of both well-watered and unwatered plants were restricted to the upper part of the profile. Root growth of unwatered plants was reduced despite the existence of high soil water potentials deep in the profile. Shallow rooting birch seedlings were unable to use this water.Pressure-volume analysis indicated that significant reductions of water potential, which are required for water uptake from drying soil, would occur in oak with only a small reduction in plant water content compared to the situation in birch. This was a result of the low solute potential in oak leaves combined with a high modulus of elasticity of cell walls. Deep rooting of oak seedlings, combined with these characteristics, which will be particularly important when soil deep in the profile begins to dry, mean that this species may be comparatively successful when growing on dry sites.

Single Plant Root System Modeling under Soil Moisture Variation

NASA Astrophysics Data System (ADS)

Yabusaki, S.; Fang, Y.; Chen, X.; Scheibe, T. D.

2016-12-01

A prognostic Virtual Plant-Atmosphere-Soil System (vPASS) model is being developed that integrates comprehensively detailed mechanistic single plant modeling with microbial, atmospheric, and soil system processes in its immediate environment. Three broad areas of process module development are targeted: Incorporating models for root growth and function, rhizosphere interactions with bacteria and other organisms, litter decomposition and soil respiration into established porous media flow and reactive transport models Incorporating root/shoot transport, growth, photosynthesis and carbon allocation process models into an integrated plant physiology model Incorporating transpiration, Volatile Organic Compounds (VOC) emission, particulate deposition and local atmospheric processes into a coupled plant/atmosphere model. The integrated plant ecosystem simulation capability is being developed as open source process modules and associated interfaces under a modeling framework. The initial focus addresses the coupling of root growth, vascular transport system, and soil under drought scenarios. Two types of root water uptake modeling approaches are tested: continuous root distribution and constitutive root system architecture. The continuous root distribution models are based on spatially averaged root development process parameters, which are relatively straightforward to accommodate in the continuum soil flow and reactive transport module. Conversely, the constitutive root system architecture models use root growth rates, root growth direction, and root branching to evolve explicit root geometries. The branching topologies require more complex data structures and additional input parameters. Preliminary results are presented for root model development and the vascular response to temporal and spatial variations in soil conditions.

Water-quality assessment of the Rio Grande Valley, Colorado, New Mexico, and Texas : shallow ground-water quality and land use in the Albuquerque area, central New Mexico, 1993

USGS Publications Warehouse

Anderholm, Scott K.

1997-01-01

This report describes the quality of shallow ground water and the relations between land use and the quality of that shallow ground water in an urban area in and adjacent to Albuquerque, New Mexico. Water samples were collected from 24 shallow wells. Samples were analyzed for selected common constituents, nutrients, trace elements, radionuclides, volatile organic compounds, and pesticides. The study area, which is in the Albuquerque Basin in central New Mexico, was limited to the Rio Grande flood plain; depth to water in this area generally is less than 25 feet. The amount and composition of recharge to the shallow ground-water system are important factors that affect shallow ground-water composition in this area. Important sources of recharge that affect shallow ground-water quality in the area include infiltration of surface water, which is used in agricultural land-use areas to irrigate crops, and infiltration of septic-system effluent in residential areas. Agricultural land use represents about 28 percent of the area, and residential land use represents about 35 percent of the total study area. In most of the study area, agricultural land use is interspersed with residential land use and neither is the dominant land use in the area. Land use in the study area historically has been changing from agricultural to urban. The composition of shallow ground water in the study area varies considerably. The dissolved solids concentration in shallow ground water in the study area ranges from 272 to 1,650 milligrams per liter, although the relative percentages of selected cations and anions do not vary substantially. Calcium generally is the dominant cation and bicarbonate generally is the dominant anion. Concentrations of nutrients generally were less than 1 milligram per liter. The concentration of many trace elements in shallow ground water was below or slightly above 1 microgram per liter and there was little variation in the concentrations. Barium, iron, manganese, molybdenum, and uranium were the only trace elements analyzed for that had median concentrations greater than 5 micrograms per liter. Volatile organic compounds were detected in 5 of 24 samples. Cis-1,2-dichloroethene and 1,1-dichloroethane were the most commonly detected volatile organic compounds (detected in two samples each). Pesticides were detected in 8 of 24 samples. Prometon was the most commonly detected pesticide (detected in 5 of 24 samples). Concentrations of volatile organic compounds and pesticides detected were much smaller than any U.S. Environmental Protection Agency standards that have been established. Infiltration of surface water and the evaporation or transpiration of this water, which partially is the result of past and present agricultural land use, seem to affect the concentrations of common constituents in shallow ground water in the study area. The small excess chloride in shallow ground water relative to surface water that has been affected by evaporation or transpiration could be due to mixing of shallow ground water with small amounts of precipitation/bulk deposition or septic-system effluent. Infiltration of septic-system effluent (residential land use) has affected the shallow ground-water composition in parts of the study area on the basis of the small dissolved oxygen concentrations, large dissolved organic carbon concentrations, and excess chloride. Despite the loading of nitrogen to the shallow ground-water system as the result of infiltration of septic-system effluent, the small nitrogen concentrations in shallow ground water probably are due to the small dissolved oxygen concentrations and relatively large dissolved organic carbon concentrations. The small concentrations and lack of variation of most trace elements indicate that land use has not substantially affected the concentration

Root evolution at the base of the lycophyte clade: insights from an Early Devonian lycophyte.

PubMed

Matsunaga, Kelly K S; Tomescu, Alexandru M F

2016-04-01

The evolution of complex rooting systems during the Devonian had significant impacts on global terrestrial ecosystems and the evolution of plant body plans. However, detailed understanding of the pathways of root evolution and the architecture of early rooting systems is currently lacking. We describe the architecture and resolve the structural homology of the rooting system of an Early Devonian basal lycophyte. Insights gained from these fossils are used to address lycophyte root evolution and homology. Plant fossils are preserved as carbonaceous compressions at Cottonwood Canyon (Wyoming), in the Lochkovian-Pragian (∼411 Ma; Early Devonian) Beartooth Butte Formation. We analysed 177 rock specimens and documented morphology, cuticular anatomy and structural relationships, as well as stratigraphic position and taphonomic conditions. The rooting system of the Cottonwood Canyon lycophyte is composed of modified stems that bear fine, dichotomously branching lateral roots. These modified stems, referred to as root-bearing axes, are produced at branching points of the above-ground shoot system. Root-bearing axes preserved in growth position exhibit evidence of positive gravitropism, whereas the lateral roots extend horizontally. Consistent recurrence of these features in successive populations of the plant preserved in situ demonstrates that they represent constitutive structural traits and not opportunistic responses of a flexible developmental programme. This is the oldest direct evidence for a rooting system preserved in growth position. These rooting systems, which can be traced to a parent plant, include some of the earliest roots known to date and demonstrate that substantial plant-substrate interactions were under way by Early Devonian time. The morphological relationships between stems, root-bearing axes and roots corroborate evidence that positive gravitropism and root identity were evolutionarily uncoupled in lycophytes, and challenge the hypothesis that roots evolved from branches of the above-ground axial system, suggesting instead that lycophyte roots arose as a novel organ. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

USGS advances in integrated, high-resolution sea-floor mapping: inner continental shelf to estuaries

USGS Publications Warehouse

Denny, J.F.; Schwab, W.C.; Twichell, D.C.; O'Brien, T.F.; Danforth, W.W.; Foster, D.S.; Bergeron, E.; Worley, C.W.; Irwin, B.J.; Butman, B.; Valentine, P.C.; Baldwin, W.E.; Morton, R.A.; Thieler, E.R.; Nichols, D.R.; Andrews, B.D.

2007-01-01

The U.S. Geological Survey (USGS) has been involved in geological mapping of the sea floor for the past thirty years. Early geophysical and acoustic mapping efforts using GLORIA (Geologic LOng Range Inclined ASDIC) a long-range sidescan-sonar system, provided broad-scale imagery of deep waters within the U.S. Exclusive Economic Zone (EEZ). In the early 1990's, research emphasis shifted from deep- to shallow-water environments to address pertinent coastal research and resource management issues. Use of shallow-water, high-resolution geophysical systems has enhanced our understanding of the processes shaping shallow marine environments. However, research within these shallow-water environments continues to present technological challenges.

Simplified continuous simulation model for investigating effects of controlled drainage on long-term soil moisture dynamics with a shallow groundwater table.

PubMed

Sun, Huaiwei; Tong, Juxiu; Luo, Wenbing; Wang, Xiugui; Yang, Jinzhong

2016-08-01

Accurate modeling of soil water content is required for a reasonable prediction of crop yield and of agrochemical leaching in the field. However, complex mathematical models faced the difficult-to-calibrate parameters and the distinct knowledge between the developers and users. In this study, a deterministic model is presented and is used to investigate the effects of controlled drainage on soil moisture dynamics in a shallow groundwater area. This simplified one-dimensional model is formulated to simulate soil moisture in the field on a daily basis and takes into account only the vertical hydrological processes. A linear assumption is proposed and is used to calculate the capillary rise from the groundwater. The pipe drainage volume is calculated by using a steady-state approximation method and the leakage rate is calculated as a function of soil moisture. The model is successfully calibrated by using field experiment data from four different pipe drainage treatments with several field observations. The model was validated by comparing the simulations with observed soil water content during the experimental seasons. The comparison results demonstrated the robustness and effectiveness of the model in the prediction of average soil moisture values. The input data required to run the model are widely available and can be measured easily in the field. It is observed that controlled drainage results in lower groundwater contribution to the root zone and lower depth of percolation to the groundwater, thus helping in the maintenance of a low level of soil salinity in the root zone.

Environmental Control of Root System Biology.

PubMed

Rellán-Álvarez, Rubén; Lobet, Guillaume; Dinneny, José R

2016-04-29

The plant root system traverses one of the most complex environments on earth. Understanding how roots support plant life on land requires knowing how soil properties affect the availability of nutrients and water and how roots manipulate the soil environment to optimize acquisition of these resources. Imaging of roots in soil allows the integrated analysis and modeling of environmental interactions occurring at micro- to macroscales. Advances in phenotyping of root systems is driving innovation in cross-platform-compatible methods for data analysis. Root systems acclimate to the environment through architectural changes that act at the root-type level as well as through tissue-specific changes that affect the metabolic needs of the root and the efficiency of nutrient uptake. A molecular understanding of the signaling mechanisms that guide local and systemic signaling is providing insight into the regulatory logic of environmental responses and has identified points where crosstalk between pathways occurs.

Modelling Root Systems Using Oriented Density Distributions

NASA Astrophysics Data System (ADS)

Dupuy, Lionel X.

2011-09-01

Root architectural models are essential tools to understand how plants access and utilize soil resources during their development. However, root architectural models use complex geometrical descriptions of the root system and this has limitations to model interactions with the soil. This paper presents the development of continuous models based on the concept of oriented density distribution function. The growth of the root system is built as a hierarchical system of partial differential equations (PDEs) that incorporate single root growth parameters such as elongation rate, gravitropism and branching rate which appear explicitly as coefficients of the PDE. Acquisition and transport of nutrients are then modelled by extending Darcy's law to oriented density distribution functions. This framework was applied to build a model of the growth and water uptake of barley root system. This study shows that simplified and computer effective continuous models of the root system development can be constructed. Such models will allow application of root growth models at field scale.

An image processing and analysis tool for identifying and analysing complex plant root systems in 3D soil using non-destructive analysis: Root1.

PubMed

Flavel, Richard J; Guppy, Chris N; Rabbi, Sheikh M R; Young, Iain M

2017-01-01

The objective of this study was to develop a flexible and free image processing and analysis solution, based on the Public Domain ImageJ platform, for the segmentation and analysis of complex biological plant root systems in soil from x-ray tomography 3D images. Contrasting root architectures from wheat, barley and chickpea root systems were grown in soil and scanned using a high resolution micro-tomography system. A macro (Root1) was developed that reliably identified with good to high accuracy complex root systems (10% overestimation for chickpea, 1% underestimation for wheat, 8% underestimation for barley) and provided analysis of root length and angle. In-built flexibility allowed the user interaction to (a) amend any aspect of the macro to account for specific user preferences, and (b) take account of computational limitations of the platform. The platform is free, flexible and accurate in analysing root system metrics.

Deep roots delay flowering and relax the impact of floral traits and associated pollinators in steppe plants

PubMed Central

Berrached, Rachda; Kadik, Leila; Ait Mouheb, Hocine; Prinzing, Andreas

2017-01-01

Strong seasonality in abiotic harshness and pollinator availability shape the reproductive success of plants. Plant species can avoid or can tolerate harsh abiotic conditions and can attract different pollinators, but it remains unknown (i) which of these capacities is most important for flowering phenology, (ii) whether tolerance/avoidance of abiotic harshness reinforces or relaxes the phenological differentiation of species attracting different pollinators. We assembled possibly the first functional trait database for a North African steppe covering 104 species. We inferred avoidance of harshness (drought) from dormancy, i.e. annual life-span and seed size. We inferred tolerance or resistance to harshness from small specific leaf area, small stature, deep roots and high dry matter content. We inferred the type of pollinators attracted from floral colour, shape and depth. We found that avoidance traits did not affect flowering phenology, and among tolerance traits only deep roots had an effect by delaying flowering. Flower colour (red or purple), and occasionally flower depth, delayed flowering. Dish, gullet and flag shape accelerated flowering. Interactive effects however were at least as important, inversing the mentioned relationship between floral characters and flowering phenology. Specifically, among drought-tolerant deep-rooted species, flowering phenologies converged among floral types attracting different pollinators, without becoming less variable overall. Direct and interactive effects of root depth and floral traits explained at least 45% of the variance in flowering phenology. Also, conclusions on interactive effects were highly consistent with and without including information on family identity or outliers. Overall, roots and floral syndromes strongly control flowering phenology, while many other traits do not. Surprisingly, floral syndromes and the related pollinators appear to constrain phenology mainly in shallow-rooted, abiotically little tolerant species. Lack of abiotic tolerance might hence constrain accessible resources and thereby impose a stronger synchronization with biotic partners such as pollinators. PMID:28301580

Natural genetic variation of root system architecture from Arabidopsis to Brachypodium: towards adaptive value.

PubMed

Pacheco-Villalobos, David; Hardtke, Christian S

2012-06-05

Root system architecture is a trait that displays considerable plasticity because of its sensitivity to environmental stimuli. Nevertheless, to a significant degree it is genetically constrained as suggested by surveys of its natural genetic variation. A few regulators of root system architecture have been isolated as quantitative trait loci through the natural variation approach in the dicotyledon model, Arabidopsis. This provides proof of principle that allelic variation for root system architecture traits exists, is genetically tractable, and might be exploited for crop breeding. Beyond Arabidopsis, Brachypodium could serve as both a credible and experimentally accessible model for root system architecture variation in monocotyledons, as suggested by first glimpses of the different root morphologies of Brachypodium accessions. Whether a direct knowledge transfer gained from molecular model system studies will work in practice remains unclear however, because of a lack of comprehensive understanding of root system physiology in the native context. For instance, apart from a few notable exceptions, the adaptive value of genetic variation in root system modulators is unknown. Future studies should thus aim at comprehensive characterization of the role of genetic players in root system architecture variation by taking into account the native environmental conditions, in particular soil characteristics.

Getting to the roots of it: Genetic and hormonal control of root architecture

PubMed Central

Jung, Janelle K. H.; McCouch, Susan

2013-01-01

Root system architecture (RSA) – the spatial configuration of a root system – is an important developmental and agronomic trait, with implications for overall plant architecture, growth rate and yield, abiotic stress resistance, nutrient uptake, and developmental plasticity in response to environmental changes. Root architecture is modulated by intrinsic, hormone-mediated pathways, intersecting with pathways that perceive and respond to external, environmental signals. The recent development of several non-invasive 2D and 3D root imaging systems has enhanced our ability to accurately observe and quantify architectural traits on complex whole-root systems. Coupled with the powerful marker-based genotyping and sequencing platforms currently available, these root phenotyping technologies lend themselves to large-scale genome-wide association studies, and can speed the identification and characterization of the genes and pathways involved in root system development. This capability provides the foundation for examining the contribution of root architectural traits to the performance of crop varieties in diverse environments. This review focuses on our current understanding of the genes and pathways involved in determining RSA in response to both intrinsic and extrinsic (environmental) response pathways, and provides a brief overview of the latest root system phenotyping technologies and their potential impact on elucidating the genetic control of root development in plants. PMID:23785372

Upper-crustal Stress Field Variations During the Building of the Central Andes: Constrains on the Activation/deactivation of Megadetachments

NASA Astrophysics Data System (ADS)

Giambiagi, L.; Tassara, A.; Mescua, J.; Suriano, J.; Mahoney, J. B.; Hoke, G. D.; Spagnotto, S. L.; Lossada, A. C.; Mardónez, D.; Mazzitelli, M.; Barrionuevo, M.

2015-12-01

Nowadays, it is broadly accepted that the Central Andes resulted largely from crustal shortening in the last ~45 Ma, driven by horizontal forces as a consequence of subduction of the Nazca plate beneath South America. However, the way this shortening is achieved is still a matter a debate. Structural, seismological, thermochronological, isotopical and sedimentological studies of the Central Andes, together with thermomechanical modeling, suggest that different megadetachments located shallow in the upper crust were active during the construction of the Andes. Constrains on changes in the state of stress in the crust gleaned from more than 1,500 fault-slip data in the arc region provide insights into how and when these megadetachments get activated or deactivated. We used a forward modeling procedure to examine five transects across the Central Andes, at 21.5°, 24°, 30°, 34° and 35°S, with particular emphasis on the relationship between deep and shallow structures. Our kinematic-thermomechanical models show that most of the upper-middle crust has a brittle-elastic behavior particularly for the cold and rigid forearc and foreland regions, and a ductile behavior below the thermally weakened arc region. Our models assume a shallow, sub-horizontal megadetachment located at the shallowest brittle-ductile transition, which concentrates the majority of the horizontal crustal shortening between the fore-arc and the South American craton. During this horizontal shortening, the crust gets thick and topography rises due to buoyancy of the crustal root. The threshold of this thickening is achieved when the bouyancy force equals the horizontal force. At this point, the megadetachment deactives and the crustal root widens eastwards in concert with ductile deformation in the lower crust and the generation of a new megadetachment. By studying changes in the paleostress fields along the arc region, from compression to strike-slip, and strike-slip to extension, associated with σ3/σ2 and σ2/σ1 permutations respectively, together with the timing of uplift and exhumation of the morphostructural units across the transects, we can constrain the timing of activation/deactivation of the detachments responsible for the Andean deformation.

Carbonate-derived CO 2 purging magma at depth: Influence on the eruptive activity of Somma-Vesuvius, Italy

NASA Astrophysics Data System (ADS)

Dallai, Luigi; Cioni, Raffaello; Boschi, Chiara; D'Oriano, Claudia

2011-10-01

Mafic phenocrysts from selected products of the last 4 ka volcanic activity at Mt. Vesuvius were investigated for their chemical and O-isotope composition, as a proxy for primary magmas feeding the system. 18O/ 16O ratios of studied Mg-rich olivines suggest that near-primary shoshonitic to tephritic melts experienced a flux of sedimentary carbonate-derived CO 2, representing the early process of magma contamination in the roots of the volcanic structure. Bulk carbonate assimilation (physical digestion) mainly occurred in the shallow crust, strongly influencing magma chamber evolution. On a petrological and geochemical basis the effects of bulk sedimentary carbonate digestion on the chemical composition of the near-primary melts are resolved from those of carbonate-released CO 2 fluxed into magma. An important outcome of this process lies in the effect of external CO 2 in changing the overall volatile solubility of the magma, enhancing the ability of Vesuvius mafic magmas to rapidly rise and explosively erupt at the surface.

Responses of soybean to ammonium and nitrate supplied in combination to the whole root system or separately in a split-root system

NASA Technical Reports Server (NTRS)

Chaillou, S.; Rideout, J. W.; Raper, C. D. Jr; Raper CD, J. r. (Principal Investigator)

1994-01-01

To address the questions of whether allocation of carbohydrates to roots is influenced by ionic form of nitrogen absorbed and whether allocation of carbohydrates to roots in turn influences proportionality between NH4+ and NO3- uptake from mixed sources, NH4+ and NO3- were supplied separately to halves of a split-root hydroponic system and were supplied in combination to a whole-root system. Dry matter accumulation in the split-root system was 18% less in the NH4(+)-fed axis than in the NO3(-)-fed axis. This, however, does not indicate that partitioning of carbohydrate between the two axes was different. Most of the reduction in dry matter accumulation in the NH4(+)-fed axis can be accounted for by the retransport of CH2O equivalents from the root back to the shoot with amino acids produced by NH4+ assimilation. Uptake of NH4+ or NO3- by the respective halves of the split-root system was proportional to the estimated allocation of carbohydrate to that half. When NH4+ and NO3- were supplied to separate halves of the split-root system, the cumulative NH4+ to NO3- uptake ratio was 0.81. When supplied in combination to the whole-root system, the cumulative NH4+ to NO3- uptake ratio was 1.67. Thus, while the shoot may affect total nitrogen uptake through the export of carbohydrates to roots, the shoot (common for halves of the split-root system) apparently does not exert a direct effect on proportionality of NH4+ and NO3- uptake by roots. For whole roots supplied with both NH4+ and NO3-, the restriction in uptake of NO3- may involve a stimulation of NO3- efflux rather than an inhibition of NO3- influx. While only the net uptake of NH4+ and NO3- was measured by ion chromatography, monitoring at approximately hourly intervals during the first 3 days of treatment revealed irregularly occurring intervals of both depletion (net influx) and enrichment (net efflux) in solutions. In the case of NH4+, numbers of net efflux events were similar (21 to 24 out of 65 sequential sampling intervals) whether NH4+ was supplied with NO3- to whole-root systems or separately to an axis of the split-root system. In the case of NO3-, however, the number of net efflux events increased from 8 when NO3- was supplied to a separate axis of the split-root system to between 19 and 24 when NO3- was supplied with NH4+ to whole-root systems.

A statistical approach to root system classification

PubMed Central

Bodner, Gernot; Leitner, Daniel; Nakhforoosh, Alireza; Sobotik, Monika; Moder, Karl; Kaul, Hans-Peter

2013-01-01

Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for “plant functional type” identification in ecology can be applied to the classification of root systems. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. The study demonstrates that principal component based rooting types provide efficient and meaningful multi-trait classifiers. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems) is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Rooting types emerging from measured data, mainly distinguished by diameter/weight and density dominated types. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement techniques are essential. PMID:23914200

A statistical approach to root system classification.

PubMed

Bodner, Gernot; Leitner, Daniel; Nakhforoosh, Alireza; Sobotik, Monika; Moder, Karl; Kaul, Hans-Peter

2013-01-01

Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for "plant functional type" identification in ecology can be applied to the classification of root systems. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. The study demonstrates that principal component based rooting types provide efficient and meaningful multi-trait classifiers. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems) is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Rooting types emerging from measured data, mainly distinguished by diameter/weight and density dominated types. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement techniques are essential.

The efficiency of different irrigation solutions and techniques for the removal of triple antibiotic paste from simulated immature root canals.

PubMed

Ustun, Y; Düzgün, S; Aslan, T; Aktı, A

2018-03-01

The purpose of this study was to evaluate the efficiencies of different irrigation protocols in the removal of triple antibiotic paste (TAP) from root canals. A total of 127 extracted human maxillary incisor teeth were prepared. Then, root-end resection of 3 mm was accomplished to simulate immature apex model. The root canals were filled with TAP, after 21 days, randomly divided into nine groups according to irrigation systems and solutions (n = 13). Conventional irrigation (CI) groups - Group 1: Root canal irrigation was performed with CI by Peracetic acid (PAA) solution, Group 2: Root canal irrigation was performed with CI by etidronic acid 1-hydroxyethylidene-1, 1-bisphosphonate (HEBP) + sodium hypochlorite (NaOCl) solution, Group 3: Root canal irrigation was performed with CI by ethylenediaminetetraacetic acid (EDTA)/NaOCl solutions. Vibringe system groups - Group 4: Root canal irrigation was performed with Vibringe system by PAA solution, Group 5: Root canal irrigation was performed with Vibringe system by HEBP + NaOCl solution, Group 6: Root canal irrigation was performed with Vibringe system by EDTA/NaOCl solution. EndoVac system groups - Group 7: Root canal irrigation was performed with EndoVac system by PAA solution, Group 8: Root canal irrigation was performed with EndoVac system by HEBP + NaOCl solution, Group 9: Root canal irrigation was performed with EndoVac system by EDTA/NaOCl solution. Control Group: (n = 0). Samples were sectioned vertically, and the amount of remaining medicament was scored for each root half and data were statistically analyzed. Among the irrigation systems, CI groups showed the highest scores at both apical and coronal parts (P < 0.05). In comparisons among the solutions, at the apical part, PAA groups showed the highest scores (P < 0.05). At the coronal part, EDTA + NaOCl groups showed the lowest score values (P < 0.05). The use of irrigation systems improved the removal of TAP from the simulated immature root canals. Also, as an irrigation solution EDTA gives more promising results than PAA and HEBP solutions.

Thermal Impact of Medium Deep Borehole Thermal Energy Storage on the Shallow Subsurface

NASA Astrophysics Data System (ADS)

Welsch, Bastian; Schulte, Daniel O.; Rühaak, Wolfram; Bär, Kristian; Sass, Ingo

2017-04-01

Borehole heat exchanger arrays are a well-suited and already widely applied method for exploiting the shallow subsurface as seasonal heat storage. However, in most of the populated regions the shallow subsurface also comprises an important aquifer system used for drinking water production. Thus, the operation of shallow geothermal heat storage systems leads to a significant increase in groundwater temperatures in the proximity of the borehole heat exchanger array. The magnitude of the impact on groundwater quality and microbiology associated with this temperature rise is controversially discussed. Nevertheless, the protection of shallow groundwater resources has priority. Accordingly, water authorities often follow restrictive permission policies for building such storage systems. An alternative approach to avoid this issue is the application of medium deep borehole heat exchanger arrays instead of shallow ones. The thermal impact on shallow aquifers can be significantly reduced as heat is stored at larger depth. Moreover, it can be further diminished by the installation of a thermally insulating materials in the upper section of the borehole heat exchangers. Based on a numerical simulation study, the advantageous effects of medium deep borehole thermal energy storage are demonstrated and quantified. A finite element software is used to model the heat transport in the subsurface in 3D, while the heat transport in the borehole heat exchangers is solved analytically in 1D. For this purpose, an extended analytical solution is implemented, which also allows for the consideration of a thermally insulating borehole section.

Adult root structure of Mediterranean shrubs: relationship with post-fire regenerative syndrome.

PubMed

Saura-Mas, S; Lloret, F

2014-01-01

Life-history attributes can impose differences on root system structures and properties related to nutrient and water uptake. Here, we assess whether plants with different post-fire regenerative strategies (resprouters, seeders and seeder-resprouters) differ in the topological and morphological properties of their root systems (external path, altitude, magnitude, topological index, specific root length, root length, root-to-shoot biomass ratio, length of the main axis of the root system and link length). To achieve these objectives, we sampled individuals from eight woody species in a shrubland located in the western Mediterranean Basin. We sampled the adult root systems using manual field excavation with the aid of an air compressor. The results indicate that resprouters have a higher root-to-shoot ratio, confirming their higher ability to store water, starch and nutrients and to invest in the belowground biomass. Moreover, this pattern would allow them to explore deeper parts of the soil layers. Seeder species would benefit from a higher specific root length, pointing to increased relative root growth and water uptake rates. This study confirms that seeders and resprouters may differ in nutrient and water uptake ability according to the characteristics of their root system. Species that can both resprout and establish seedlings after fire had different patterns of root system structure; in particular, root:shoot ratio was more similar to resprouters and specific root length was closer to seeders, supporting the distinct functional performance of this type of species. © 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.

A moist Boussinesq shallow water equations set for testing atmospheric models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zerroukat, M., E-mail: mohamed.zerroukat@metoffice.gov.uk; Allen, T.

The shallow water equations have long been used as an initial test for numerical methods applied to atmospheric models with the test suite of Williamson et al. being used extensively for validating new schemes and assessing their accuracy. However the lack of physics forcing within this simplified framework often requires numerical techniques to be reworked when applied to fully three dimensional models. In this paper a novel two-dimensional shallow water equations system that retains moist processes is derived. This system is derived from three-dimensional Boussinesq approximation of the hydrostatic Euler equations where, unlike the classical shallow water set, we allowmore » the density to vary slightly with temperature. This results in extra (or buoyancy) terms for the momentum equations, through which a two-way moist-physics dynamics feedback is achieved. The temperature and moisture variables are advected as separate tracers with sources that interact with the mean-flow through a simplified yet realistic bulk moist-thermodynamic phase-change model. This moist shallow water system provides a unique tool to assess the usually complex and highly non-linear dynamics–physics interactions in atmospheric models in a simple yet realistic way. The full non-linear shallow water equations are solved numerically on several case studies and the results suggest quite realistic interaction between the dynamics and physics and in particular the generation of cloud and rain. - Highlights: • Novel shallow water equations which retains moist processes are derived from the three-dimensional hydrostatic Boussinesq equations. • The new shallow water set can be seen as a more general one, where the classical equations are a special case of these equations. • This moist shallow water system naturally allows a feedback mechanism from the moist physics increments to the momentum via buoyancy. • Like full models, temperature and moistures are advected as tracers that interact through a simplified yet realistic phase-change model. • This model is a unique tool to test numerical methods for atmospheric models, and physics–dynamics coupling, in a very realistic and simple way.« less

Underground tuning: quantitative regulation of root growth.

PubMed

Satbhai, Santosh B; Ristova, Daniela; Busch, Wolfgang

2015-02-01

Plants display a high degree of phenotypic plasticity that allows them to tune their form and function to changing environments. The plant root system has evolved mechanisms to anchor the plant and to efficiently explore soils to forage for soil resources. Key to this is an enormous capacity for plasticity of multiple traits that shape the distribution of roots in the soil. Such root system architecture-related traits are determined by root growth rates, root growth direction, and root branching. In this review, we describe how the root system is constituted, and which mechanisms, pathways, and genes mainly regulate plasticity of the root system in response to environmental variation. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

HF Radar Sea-echo from Shallow Water.

PubMed

Lipa, Belinda; Nyden, Bruce; Barrick, Don; Kohut, Josh

2008-08-06

HF radar systems are widely and routinely used for the measurement of ocean surface currents and waves. Analysis methods presently in use are based on the assumption of infinite water depth, and may therefore be inadequate close to shore where the radar echo is strongest. In this paper, we treat the situation when the radar echo is returned from ocean waves that interact with the ocean floor. Simulations are described which demonstrate the effect of shallow water on radar sea-echo. These are used to investigate limits on the existing theory and to define water depths at which shallow-water effects become significant. The second-order spectral energy increases relative to the first-order as the water depth decreases, resulting in spectral saturation when the waveheight exceeds a limit defined by the radar transmit frequency. This effect is particularly marked for lower radar transmit frequencies. The saturation limit on waveheight is less for shallow water. Shallow water affects second-order spectra (which gives wave information) far more than first-order (which gives information on current velocities), the latter being significantly affected only for the lowest radar transmit frequencies for extremely shallow water. We describe analysis of radar echo from shallow water measured by a Rutgers University HF radar system to give ocean wave spectral estimates. Radar-derived wave height, period and direction are compared with simultaneous shallow-water in-situ measurements.

HF Radar Sea-echo from Shallow Water

PubMed Central

Lipa, Belinda; Nyden, Bruce; Barrick, Don; Kohut, Josh

2008-01-01

HF radar systems are widely and routinely used for the measurement of ocean surface currents and waves. Analysis methods presently in use are based on the assumption of infinite water depth, and may therefore be inadequate close to shore where the radar echo is strongest. In this paper, we treat the situation when the radar echo is returned from ocean waves that interact with the ocean floor. Simulations are described which demonstrate the effect of shallow water on radar sea-echo. These are used to investigate limits on the existing theory and to define water depths at which shallow-water effects become significant. The second-order spectral energy increases relative to the first-order as the water depth decreases, resulting in spectral saturation when the waveheight exceeds a limit defined by the radar transmit frequency. This effect is particularly marked for lower radar transmit frequencies. The saturation limit on waveheight is less for shallow water. Shallow water affects second-order spectra (which gives wave information) far more than first-order (which gives information on current velocities), the latter being significantly affected only for the lowest radar transmit frequencies for extremely shallow water. We describe analysis of radar echo from shallow water measured by a Rutgers University HF radar system to give ocean wave spectral estimates. Radar-derived wave height, period and direction are compared with simultaneous shallow-water in-situ measurements. PMID:27873776

Response of the Rio Grande and shallow ground water in the Mesilla Bolson to irrigation, climate stress, and pumping

USGS Publications Warehouse

Walton, J.; Ohlmacher, G.; Utz, D.; Kutianawala, M.

1999-01-01

The El Paso-Ciudad Juarez metropolitan area obtains its water from the Rio Grande and intermontane-basin aquifers. Shallow ground water in this region is in close communications with the surface water system. A major problem with both systems is salinity. Upstream usage of the water in the Rio Grande for irrigation and municipalities has led to concentration of soluble salts to the point where the surface water commonly exceeds drinking water standards. Shallow ground water is recharged by surface water (primarily irrigation canals and agricultural fields) and discharges to surface water (agricultural drains) and deeper ground water. The source of water entering the Rio Grande varies seasonally. During the irrigation season, water is released from reservoirs and mixes with the return flow from irrigation drains. During the non-irrigation season (winter), flow is from irrigation drains and river water quality is indicative of shallow ground water. The annual cycle can be ascertained from the inverse correlation between ion concentrations and discharge in the river. Water-quality data indicate that the salinity of shallow ground water increases each year during a drought. Water-management strategies in the region can affect water quality. Increasing the pumping rate of water-supply wells will cause shallow ground water to flow into the deeper aquifers and degrade the water quality. Lining the canals in the irrigation system to stop water leakage will lead to water quality degradation in shallow ground water and, eventually, deep ground water by removing a major source of high quality recharge that currently lowers the salinity of the shallow ground water.

Seasonal changes of whole root system conductance by a drought-tolerant grape root system.

PubMed

Alsina, Maria Mar; Smart, David R; Bauerle, Taryn; de Herralde, Felicidad; Biel, Carme; Stockert, Christine; Negron, Claudia; Save, Robert

2011-01-01

The role of root systems in drought tolerance is a subject of very limited information compared with above-ground responses. Adjustments to the ability of roots to supply water relative to shoot transpiration demand is proposed as a major means for woody perennial plants to tolerate drought, and is often expressed as changes in the ratios of leaf to root area (A(L):A(R)). Seasonal root proliferation in a directed manner could increase the water supply function of roots independent of total root area (A(R)) and represents a mechanism whereby water supply to demand could be increased. To address this issue, seasonal root proliferation, stomatal conductance (g(s)) and whole root system hydraulic conductance (k(r)) were investigated for a drought-tolerant grape root system (Vitis berlandieri×V. rupestris cv. 1103P) and a non-drought-tolerant root system (Vitis riparia×V. rupestris cv. 101-14Mgt), upon which had been grafted the same drought-sensitive clone of Vitis vinifera cv. Merlot. Leaf water potentials (ψ(L)) for Merlot grafted onto the 1103P root system (-0.91±0.02 MPa) were +0.15 MPa higher than Merlot on 101-14Mgt (-1.06±0.03 MPa) during spring, but dropped by approximately -0.4 MPa from spring to autumn, and were significantly lower by -0.15 MPa (-1.43±0.02 MPa) than for Merlot on 101-14Mgt (at -1.28±0.02 MPa). Surprisingly, g(s) of Merlot on the drought-tolerant root system (1103P) was less down-regulated and canopies maintained evaporative fluxes ranging from 35-20 mmol vine(-1) s(-1) during the diurnal peak from spring to autumn, respectively, three times greater than those measured for Merlot on the drought-sensitive rootstock 101-14Mgt. The drought-tolerant root system grew more roots at depth during the warm summer dry period, and the whole root system conductance (k(r)) increased from 0.004 to 0.009 kg MPa(-1) s(-1) during that same time period. The changes in k(r) could not be explained by xylem anatomy or conductivity changes of individual root segments. Thus, the manner in which drought tolerance was conveyed to the drought-sensitive clone appeared to arise from deep root proliferation during the hottest and driest part of the season, rather than through changes in xylem structure, xylem density or stomatal regulation. This information can be useful to growers on a site-specific basis in selecting rootstocks for grape clonal material (scions) grafted to them.

NEKTON HABITAT QUALITY AT SHALLOW-WATER SITES IN TWO RHODE ISLAND COASTAL SYSTEMS

EPA Science Inventory

We evaluated nekton habitat quality at five shallow-water sites in two Rhode Island systems by comparing nekton densities and biomass, number of species, prey availability and feeding, and abundance of winter flounder Pseudopleuronectes americanus. Nekton density and biomass wer...

[Root system distribution and biomechanical characteristics of Bambusa oldhami].

PubMed

Zhou, Ben-Zhi; Xu, Sheng-Hua; An, Yan-Fei; Xu, Sheng-Hua

2014-05-01

To determine the mechanism of soil stabilizing through Bambusa oldhami root system, the vertical distribution of B. oldhami root system in soil was investigated, and the tensile strength of individual root and soil shear strength were measured in B. oldhami forest. The dry mass, length, surface area and volume of the B. oldhami root system decreased with the increasing soil depth, with more than 90% of the root system occurring in the 0-40 cm soil layer. The root class with D 1 mm occupied the highest percentage of the total in terms of root length, accounting for 79.6%, but the lowest percentage of the total in terms of root volume, accounting for 8.2%. The root class with D >2 mm was the opposite, and the root class with D= 1-2 mm stayed in between. The maximum tensile resistance of B. oldhami root, either with 12% moisture content or a saturated moisture content, increased with the increasing root diameter, while the tensile strength decreased with the increasing root diameter in accordance with power function. Tensile strength of the root, with either of the two moisture contents, was significantly different among the diameter classes, with the highest tensile strength occurring in the root with D < or = 1 mm and the lowest in the root with D > or = 2 mm. The tensile strength of root with 12% moisture content was significantly higher than that with the saturated moisture content, and less effect of moisture content on root tensile strength would occur in thicker roots. The shear strengths of B. oldhami forest soil and of bare soil both increased with the increasing soil depth. The shear strength of B. oldhami forest soil had a linear positive correlation with the root content in soil, and was significantly higher than that of bare soil. The shear strength increment in B. oldhami forest was positively correlated with the root content in soil according to an exponential function, but not related significantly with soil depth.

Low phosphate alters lateral root setpoint angle and gravitropism.

PubMed

Bai, Hanwen; Murali, Bhavna; Barber, Kevin; Wolverton, Chris

2013-01-01

Lateral roots, responsible for water and nutrient uptake, maintain nonvertical angles throughout development. Soil phosphate is one limiting nutrient for plant growth that is known to induce changes to root system architecture, such as increased lateral root formation. This study seeks to determine whether phosphate concentration affects lateral root orientation in addition to its previously described influences on root architecture. Images of intact Arabidopsis root systems were recorded for 24 h, and lateral root tip angles were measured for wild-type and mutant pgm-1 and pin3-1 roots on a full or low phosphate medium. Setpoint angles of unstimulated root systems were determined, as were gravitropic responses of lateral roots over time. The root system setpoint angles of wild-type and mutant pin3-1 roots showed a shift toward a more vertical orientation on low orthophosphate (Pi) medium. The gravitropic responses of both pgm-1 and pin3-1 roots on low Pi medium was elevated relative to control Pi medium. Mutations in two phosphate transporters with high levels of expression in the root showed a gravitropic response similar to wild-type roots grown on low Pi, supporting a role for Pi status in regulating lateral root gravitropism. Lateral root orientation and gravitropism are affected by Pi status and may provide an important additional parameter for describing root responses to low Pi. The data also support the conclusion that gravitropic setpoint angle reacts to nutrient status and is under dynamic regulation.

To what extent may changes in the root system architecture of Arabidopsis thaliana grown under contrasted homogenous nitrogen regimes be explained by changes in carbon supply? A modelling approach.

PubMed

Brun, François; Richard-Molard, Céline; Pagès, Loïc; Chelle, Michaël; Ney, Bertrand

2010-05-01

Root system architecture adapts to low nitrogen (N) nutrition. Some adaptations may be mediated by modifications of carbon (C) fluxes. The objective of this study was to test the hypothesis that changes in root system architecture under different N regimes may be accounted for by using simple hypotheses of C allocation within the root system of Arabidopsis thaliana. With that purpose, a model during vegetative growth was developed that predicted the main traits of root system architecture (total root length, lateral root number, and specific root length). Different experimental data sets crossing three C levels and two N homogenous nutrition levels were generated. Parameters were estimated from an experiment carried out under medium C and high N conditions. They were then checked under other CxN conditions. It was found that the model was able to simulate correctly C effects on root architecture in both high and low N nutrition conditions, with the same parameter values. It was concluded that C flux modifications explained the major part of root system adaptation to N supply, even if they were not sufficient to simulate some changes, such as specific root length.

Next Generation Image-Based Phenotyping of Root System Architecture

NASA Astrophysics Data System (ADS)

Davis, T. W.; Shaw, N. M.; Cheng, H.; Larson, B. G.; Craft, E. J.; Shaff, J. E.; Schneider, D. J.; Piñeros, M. A.; Kochian, L. V.

2016-12-01

The development of the Plant Root Imaging and Data Acquisition (PRIDA) hardware/software system enables researchers to collect digital images, along with all the relevant experimental details, of a range of hydroponically grown agricultural crop roots for 2D and 3D trait analysis. Previous efforts of image-based root phenotyping focused on young cereals, such as rice; however, there is a growing need to measure both older and larger root systems, such as those of maize and sorghum, to improve our understanding of the underlying genetics that control favorable rooting traits for plant breeding programs to combat the agricultural risks presented by climate change. Therefore, a larger imaging apparatus has been prototyped for capturing 3D root architecture with an adaptive control system and innovative plant root growth media that retains three-dimensional root architectural features. New publicly available multi-platform software has been released with considerations for both high throughput (e.g., 3D imaging of a single root system in under ten minutes) and high portability (e.g., support for the Raspberry Pi computer). The software features unified data collection, management, exploration and preservation for continued trait and genetics analysis of root system architecture. The new system makes data acquisition efficient and includes features that address the needs of researchers and technicians, such as reduced imaging time, semi-automated camera calibration with uncertainty characterization, and safe storage of the critical experimental data.

Do root hydraulic properties change during the early vegetative stage of plant development in barley (Hordeum vulgare)?

PubMed Central

Suku, Shimi; Knipfer, Thorsten; Fricke, Wieland

2014-01-01

Background and Aims As annual crops develop, transpirational water loss increases substantially. This increase has to be matched by an increase in water uptake through the root system. The aim of this study was to assess the contributions of changes in intrinsic root hydraulic conductivity (Lp, water uptake per unit root surface area, driving force and time), driving force and root surface area to developmental increases in root water uptake. Methods Hydroponically grown barley plants were analysed during four windows of their vegetative stage of development, when they were 9–13, 14–18, 19–23 and 24–28 d old. Hydraulic conductivity was determined for individual roots (Lp) and for entire root systems (Lpr). Osmotic Lp of individual seminal and adventitious roots and osmotic Lpr of the root system were determined in exudation experiments. Hydrostatic Lp of individual roots was determined by root pressure probe analyses, and hydrostatic Lpr of the root system was derived from analyses of transpiring plants. Key Results Although osmotic and hydrostatic Lp and Lpr values increased initially during development and were correlated positively with plant transpiration rate, their overall developmental increases (about 2-fold) were small compared with increases in transpirational water loss and root surface area (about 10- to 40-fold). The water potential gradient driving water uptake in transpiring plants more than doubled during development, and potentially contributed to the increases in plant water flow. Osmotic Lpr of entire root systems and hydrostatic Lpr of transpiring plants were similar, suggesting that the main radial transport path in roots was the cell-to-cell path at all developmental stages. Conclusions Increase in the surface area of root system, and not changes in intrinsic root hydraulic properties, is the main means through which barley plants grown hydroponically sustain an increase in transpirational water loss during their vegetative development. PMID:24287810

Do root hydraulic properties change during the early vegetative stage of plant development in barley (Hordeum vulgare)?

PubMed

Suku, Shimi; Knipfer, Thorsten; Fricke, Wieland

2014-02-01

As annual crops develop, transpirational water loss increases substantially. This increase has to be matched by an increase in water uptake through the root system. The aim of this study was to assess the contributions of changes in intrinsic root hydraulic conductivity (Lp, water uptake per unit root surface area, driving force and time), driving force and root surface area to developmental increases in root water uptake. Hydroponically grown barley plants were analysed during four windows of their vegetative stage of development, when they were 9-13, 14-18, 19-23 and 24-28 d old. Hydraulic conductivity was determined for individual roots (Lp) and for entire root systems (Lp(r)). Osmotic Lp of individual seminal and adventitious roots and osmotic Lp(r) of the root system were determined in exudation experiments. Hydrostatic Lp of individual roots was determined by root pressure probe analyses, and hydrostatic Lp(r) of the root system was derived from analyses of transpiring plants. Although osmotic and hydrostatic Lp and Lp(r) values increased initially during development and were correlated positively with plant transpiration rate, their overall developmental increases (about 2-fold) were small compared with increases in transpirational water loss and root surface area (about 10- to 40-fold). The water potential gradient driving water uptake in transpiring plants more than doubled during development, and potentially contributed to the increases in plant water flow. Osmotic Lp(r) of entire root systems and hydrostatic Lp(r) of transpiring plants were similar, suggesting that the main radial transport path in roots was the cell-to-cell path at all developmental stages. Increase in the surface area of root system, and not changes in intrinsic root hydraulic properties, is the main means through which barley plants grown hydroponically sustain an increase in transpirational water loss during their vegetative development.

Nitrogen economics of root foraging: Transitive closure of the nitrate–cytokinin relay and distinct systemic signaling for N supply vs. demand

PubMed Central

Ruffel, Sandrine; Krouk, Gabriel; Ristova, Daniela; Shasha, Dennis; Birnbaum, Kenneth D.; Coruzzi, Gloria M.

2011-01-01

As sessile organisms, root plasticity enables plants to forage for and acquire nutrients in a fluctuating underground environment. Here, we use genetic and genomic approaches in a “split-root” framework—in which physically isolated root systems of the same plant are challenged with different nitrogen (N) environments—to investigate how systemic signaling affects genome-wide reprogramming and root development. The integration of transcriptome and root phenotypes enables us to identify distinct mechanisms underlying “N economy” (i.e., N supply and demand) of plants as a system. Under nitrate-limited conditions, plant roots adopt an “active-foraging strategy”, characterized by lateral root outgrowth and a shared pattern of transcriptome reprogramming, in response to either local or distal nitrate deprivation. By contrast, in nitrate-replete conditions, plant roots adopt a “dormant strategy”, characterized by a repression of lateral root outgrowth and a shared pattern of transcriptome reprogramming, in response to either local or distal nitrate supply. Sentinel genes responding to systemic N signaling identified by genome-wide comparisons of heterogeneous vs. homogeneous split-root N treatments were used to probe systemic N responses in Arabidopsis mutants impaired in nitrate reduction and hormone synthesis and also in decapitated plants. This combined analysis identified genetically distinct systemic signaling underlying plant N economy: (i) N supply, corresponding to a long-distance systemic signaling triggered by nitrate sensing; and (ii) N demand, experimental support for the transitive closure of a previously inferred nitrate–cytokinin shoot–root relay system that reports the nitrate demand of the whole plant, promoting a compensatory root growth in nitrate-rich patches of heterogeneous soil. PMID:22025711

A scanner system for high-resolution quantification of variation in root growth dynamics of Brassica rapa genotypes.

PubMed

Adu, Michael O; Chatot, Antoine; Wiesel, Lea; Bennett, Malcolm J; Broadley, Martin R; White, Philip J; Dupuy, Lionel X

2014-05-01

The potential exists to breed for root system architectures that optimize resource acquisition. However, this requires the ability to screen root system development quantitatively, with high resolution, in as natural an environment as possible, with high throughput. This paper describes the construction of a low-cost, high-resolution root phenotyping platform, requiring no sophisticated equipment and adaptable to most laboratory and glasshouse environments, and its application to quantify environmental and temporal variation in root traits between genotypes of Brassica rapa L. Plants were supplied with a complete nutrient solution through the wick of a germination paper. Images of root systems were acquired without manual intervention, over extended periods, using multiple scanners controlled by customized software. Mixed-effects models were used to describe the sources of variation in root traits contributing to root system architecture estimated from digital images. It was calculated that between one and 43 replicates would be required to detect a significant difference (95% CI 50% difference between traits). Broad-sense heritability was highest for shoot biomass traits (>0.60), intermediate (0.25-0.60) for the length and diameter of primary roots and lateral root branching density on the primary root, and lower (<0.25) for other root traits. Models demonstrate that root traits show temporal variations of various types. The phenotyping platform described here can be used to quantify environmental and temporal variation in traits contributing to root system architecture in B. rapa and can be extended to screen the large populations required for breeding for efficient resource acquisition.

Modelling of seasonal dynamics of Wetland-Groundwater flow interaction in the Canadian Prairies

NASA Astrophysics Data System (ADS)

Ali, Melkamu; Nussbaumer, Raphaël; Ireson, Andrew; Keim, Dawn

2015-04-01

Wetland-shallow groundwater interaction is studied at the St. Denis National Wildlife Area in Saskatchewan, Canada, located within the northern glaciated prairies of North America. Ponds in the Canadian Prairies are intermittently connected by fill-spill processes in the spring and growing season of some wetter years. The contribution of the ponds and wetlands to groundwater is still a significant research challenge. The objective of this study is to evaluate model's ability to reproduce observed effects of groundwater-wetland interactions including seasonal pattern of shallow groundwater table, intended flow direction and to quantify the depression induced infiltration from the wetland to the surrounding uplands. The integrated surface-wetland-shallow groundwater processes and the changes in land-energy and water balances caused by the flow interaction are simulated using ParFlow-CLM at a small watershed of 1km2 containing both permanent and seasonal wetland complexes. We compare simulated water table depth with piezometers reading monitored by level loggers at the watershed. We also present the strengths and limitations of the model in reproducing observed behaviour of the groundwater table response to the spring snowmelt and summer rainfall. Simulations indicate that the shallow water table at the uphill recovers quickly after major rainfall events in early summer that generates lateral flow to the pond. In late summer, the wetland supplies water to the surrounding upland when the evapotranspiration is higher than the precipitation in which more water from the root zone is up taken by plants. Results also show that Parflow-CLM is able to reasonably simulate the water table patterns response to summer rainfall, while it is insufficient to reproduce the spring snowmelt infiltration which is the most dominant hydrological process in the Prairies.

The Rhizobium sp. strain NGR234 systemically suppresses arbuscular mycorrhizal root colonization in a split-root system of barley (Hordeum vulgare).

PubMed

Khaosaad, Thanasan; Staehelin, Christian; Steinkellner, Siegrid; Hage-Ahmed, Karin; Ocampo, Juan Antonio; Garcia-Garrido, Jose Manuel; Vierheilig, Horst

2010-11-01

Nitrogen-fixing bacteria (rhizobia) form a nodule symbiosis with legumes, but also induce certain effects on non-host plants. Here, we used a split-root system of barley to examine whether inoculation with Rhizobium sp. strain NGR234 on one side of a split-root system systemically affects arbuscular mycorrhizal (AM) root colonization on the other side. Mutant strains of NGR234 deficient in Nod factor production (strain NGRΔnodABC), perception of flavonoids (strain NGRΔnodD1) and secretion of type 3 effector proteins (strain NGRΩrhcN) were included in this study. Inoculation resulted in a systemic reduction of AM root colonization with all tested strains. However, the suppressive effect of strain NGRΩrhcN was less pronounced. Moreover, levels of salicylic acid, an endogenous molecule related to plant defense, were increased in roots challenged with rhizobia. These data indicate that barley roots perceived NGR234 and that a systemic regulatory mechanism of AM root colonization was activated. The suppressive effect appears to be Nod factor independent, but enhanced by type 3 effector proteins of NGR234. Copyright © Physiologia Plantarum 2010.

C-shaped root canal in a maxillary first molar: a case report.

PubMed

Yilmaz, Z; Tuncel, B; Serper, A; Calt, S

2006-02-01

This case report presents an unusual C-shaped root canal system in a maxillary first molar tooth. Although C-shaped root canals are most frequently seen in the mandibular second molar, they may also appear in maxillary molars. A literature search revealed only a few case reports of C-shaped root canal systems in maxillary molars. The present case describes a C-shaped canal in the buccal root of a maxillary first molar. The endodontic access cavity displayed two canal orifices, one leading to the canal system in the buccal root, the other into the palatal root canal system. In the buccal root, what appeared to be the mesial and distal canals joined to form a single C-shaped canal. --Careful examination of radiographs and the internal anatomy of teeth is essential.-- The location and morphology of root canals should be identified at high magnification under the microscope.

A SHALLOW WATER ISOBARIC BUOY.

DTIC Science & Technology

The genesis, development, and testing of an instrument for following currents in shallow waters is described. The volume of the ’shallow water ...isobaric buoy’ (SWIB) varies in response to pressure signals derived from the depth of the water in which the instrument floats. Mechanisms for auto...indicate the feasibility of the system. The instrument can hover in a relatively restricted horizontal layer. The instrument may find application as a water stability indicator as well as a shallow water current tag. (Author)

Developing suitable methods for effective characterization of electrical properties of root segments

NASA Astrophysics Data System (ADS)

Ehosioke, Solomon; Phalempin, Maxime; Garré, Sarah; Kemna, Andreas; Huisman, Sander; Javaux, Mathieu; Nguyen, Frédéric

2017-04-01

The root system represents the hidden half of the plant which plays a key role in food production and therefore needs to be well understood. Root system characterization has been a great challenge because the roots are buried in the soil. This coupled with the subsurface heterogeneity and the transient nature of the biogeochemical processes that occur in the root zone makes it difficult to access and monitor the root system over time. The traditional method of point sampling (root excavation, monoliths, minirhizotron etc.) for root investigation does not account for the transient nature and spatial variability of the root zone, and it often disturbs the natural system under investigation. The quest to overcome these challenges has led to an increase in the application of geophysical methods. Recent studies have shown a correlation between bulk electrical resistivity and root mass density, but an understanding of the contribution of the individual segments of the root system to that bulk signal is still missing. This study is an attempt to understand the electrical properties of roots at the segment scale (1-5cm) for more effective characterization of electrical signal of the full root architecture. The target plants were grown in three different media (pot soil, hydroponics and a mixture of sand, perlite and vermiculite). Resistance measurements were carried out on a single segment of each study plant using a voltmeter while the diameter was measured using a digital calliper. The axial resistance was calculated using the measured resistance and the geometric parameters. This procedure was repeated for each plant replica over a period of 75 days which enabled us to study the effects of age, growth media, diameter and length on the electrical response of the root segments of the selected plants. The growth medium was found to have a significant effect on the root electrical response, while the effect of root diameter on their electrical response was found to vary among the plants. More work is still required to further validate these results and also to develop better systems to study the electrical behaviour of root segments. Findings from our review entitled "an overview of the geophysical approach to root investigation", suggest that SIP and EIT geophysical methods could be very useful for root investigations, thus more work is in progress to develop these systems for assessing the root electrical response at various scales.

Understanding the development of roots exposed to contaminants and the potential of plant-associated bacteria for optimization of growth

PubMed Central

Remans, Tony; Thijs, Sofie; Truyens, Sascha; Weyens, Nele; Schellingen, Kerim; Keunen, Els; Gielen, Heidi; Cuypers, Ann; Vangronsveld, Jaco

2012-01-01

Background and Scope Plant responses to the toxic effects of soil contaminants, such as excess metals or organic substances, have been studied mainly at physiological, biochemical and molecular levels, but the influence on root system architecture has received little attention. Nevertheless, the precise position, morphology and extent of roots can influence contaminant uptake. Here, data are discussed that aim to increase the molecular and ecological understanding of the influence of contaminants on root system architecture. Furthermore, the potential of plant-associated bacteria to influence root growth by their growth-promoting and stress-relieving capacities is explored. Methods Root growth parameters of Arabidopsis thaliana seedlings grown in vertical agar plates are quantified. Mutants are used in a reverse genetics approach to identify molecular components underlying quantitative changes in root architecture after exposure to excess cadmium, copper or zinc. Plant-associated bacteria are isolated from contaminated environments, genotypically and phenotypically characterized, and used to test plant root growth improvement in the presence of contaminants. Key Results The molecular determinants of primary root growth inhibition and effects on lateral root density by cadmium were identified. A vertical split-root system revealed local effects of cadmium and copper on root development. However, systemic effects of zinc exposure on root growth reduced both the avoidance of contaminated areas and colonization of non-contaminated areas. The potential for growth promotion and contaminant degradation of plant-associated bacteria was demonstrated by improved root growth of inoculated plants exposed to 2,4-di-nitro-toluene (DNT) or cadmium. Conclusions Knowledge concerning the specific influence of different contaminants on root system architecture and the molecular mechanisms by which this is achieved can be combined with the exploitation of plant-associated bacteria to influence root development and increase plant stress tolerance, which should lead to more optimal root systems for application in phytoremediation or safer biomass production. PMID:22634257

Understanding the development of roots exposed to contaminants and the potential of plant-associated bacteria for optimization of growth.

PubMed

Remans, Tony; Thijs, Sofie; Truyens, Sascha; Weyens, Nele; Schellingen, Kerim; Keunen, Els; Gielen, Heidi; Cuypers, Ann; Vangronsveld, Jaco

2012-07-01

Plant responses to the toxic effects of soil contaminants, such as excess metals or organic substances, have been studied mainly at physiological, biochemical and molecular levels, but the influence on root system architecture has received little attention. Nevertheless, the precise position, morphology and extent of roots can influence contaminant uptake. Here, data are discussed that aim to increase the molecular and ecological understanding of the influence of contaminants on root system architecture. Furthermore, the potential of plant-associated bacteria to influence root growth by their growth-promoting and stress-relieving capacities is explored. Root growth parameters of Arabidopsis thaliana seedlings grown in vertical agar plates are quantified. Mutants are used in a reverse genetics approach to identify molecular components underlying quantitative changes in root architecture after exposure to excess cadmium, copper or zinc. Plant-associated bacteria are isolated from contaminated environments, genotypically and phenotypically characterized, and used to test plant root growth improvement in the presence of contaminants. The molecular determinants of primary root growth inhibition and effects on lateral root density by cadmium were identified. A vertical split-root system revealed local effects of cadmium and copper on root development. However, systemic effects of zinc exposure on root growth reduced both the avoidance of contaminated areas and colonization of non-contaminated areas. The potential for growth promotion and contaminant degradation of plant-associated bacteria was demonstrated by improved root growth of inoculated plants exposed to 2,4-di-nitro-toluene (DNT) or cadmium. Knowledge concerning the specific influence of different contaminants on root system architecture and the molecular mechanisms by which this is achieved can be combined with the exploitation of plant-associated bacteria to influence root development and increase plant stress tolerance, which should lead to more optimal root systems for application in phytoremediation or safer biomass production.

The Influence of Plant Root Systems on Subsurface Flow: Implications for Slope Stability

EPA Science Inventory

Although research has explained how plant roots mechanically stabilize soils, in this article we explore how root systems create networks of preferential flow and thus influence water pressures in soils to trigger landslides. Root systems may alter subsurface flow: Hydrological m...

Longevity of shallow subsurface drip irrigation tubing under three tillage practices

USDA-ARS?s Scientific Manuscript database

Shallow Sub-Surface drip irrigation (S3DI) has drip tubing buried about 2-in below the soil surface. It is unknown how long drip tubing would be viable at this shallow soil depth using strip- or no-tillage systems. The objectives were to determine drip tube longevity, resultant crop yield, and parti...

Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply.

PubMed

Wang, Xiaohua; Chen, Yanling; Thomas, Catherine L; Ding, Guangda; Xu, Ping; Shi, Dexu; Grandke, Fabian; Jin, Kemo; Cai, Hongmei; Xu, Fangsen; Yi, Bin; Broadley, Martin R; Shi, Lei

2017-08-01

Breeding crops with ideal root system architecture for efficient absorption of phosphorus is an important strategy to reduce the use of phosphate fertilizers. To investigate genetic variants leading to changes in root system architecture, 405 oilseed rape cultivars were genotyped with a 60K Brassica Infinium SNP array in low and high P environments. A total of 285 single-nucleotide polymorphisms were associated with root system architecture traits at varying phosphorus levels. Nine single-nucleotide polymorphisms corroborate a previous linkage analysis of root system architecture quantitative trait loci in the BnaTNDH population. One peak single-nucleotide polymorphism region on A3 was associated with all root system architecture traits and co-localized with a quantitative trait locus for primary root length at low phosphorus. Two more single-nucleotide polymorphism peaks on A5 for root dry weight at low phosphorus were detected in both growth systems and co-localized with a quantitative trait locus for the same trait. The candidate genes identified on A3 form a haplotype 'BnA3Hap', that will be important for understanding the phosphorus/root system interaction and for the incorporation into Brassica napus breeding programs. © The Author 2017. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

Characterizing root system characteristics with Electrical resistivity Tomography: a virtual rhizotron simulation

NASA Astrophysics Data System (ADS)

Rao, Sathyanarayan; Ehosioke, Solomon; Lesparre, Nolwenn; Nguyen, Frédéric; Javaux, Mathieu

2017-04-01

Electrical Resistivity Tomography (ERT) is more and more used for monitoring soil water content in a cropped soil. Yet, the impact of roots on the signal is often neglected and a topic of controversy. In several studies related to soil-root system, it has been showed that the measured root mass density statistically correlates with the electrical conductivity (EC) data obtained from ERT. In addition, some studies suggest that some roots are more electrically conductive than soil for most water content. Thus, higher EC of roots suggest that it might have a measurable impact on ERT signals. In this work, virtual rhizotrons are simulated using the software package called R-SWMS that solves water and solute transport in plant root-soil system, including root growth. The distribution of water content obtained from R-SWMS simulation is converted into EC data using pedo-physical models. The electrical properties of roots and rhizosphere are explicitly included in the EC data to form a conductivity map (CM) with a very detailed spatial resolution. Forward ERT simulations is then carried out for CM generated for various root architectures and soil conditions to study the impact of roots on ERT forward (current and voltage patterns) and inverse solutions. It is demonstrated that under typical injection schemes with lateral electrodes, root system is hardly measurable. However, it is showed that adding electrodes and constraints on the ERT inversion based on root architecture help quantifying root system mass and extent.

Phosphate Availability Alters Architecture and Causes Changes in Hormone Sensitivity in the Arabidopsis Root System1

PubMed Central

López-Bucio, José; Hernández-Abreu, Esmeralda; Sánchez-Calderón, Lenin; Nieto-Jacobo, María Fernanda; Simpson, June; Herrera-Estrella, Luis

2002-01-01

The postembryonic developmental program of the plant root system is plastic and allows changes in root architecture to adapt to environmental conditions such as water and nutrient availability. Among essential nutrients, phosphorus (P) often limits plant productivity because of its low mobility in soil. Therefore, the architecture of the root system may determine the capacity of the plant to acquire this nutrient. We studied the effect of P availability on the development of the root system in Arabidopsis. We found that at P-limiting conditions (<50 μm), the Arabidopsis root system undergoes major architectural changes in terms of lateral root number, lateral root density, and primary root length. Treatment with auxins and auxin antagonists indicate that these changes are related to an increase in auxin sensitivity in the roots of P-deprived Arabidopsis seedlings. It was also found that the axr1-3, axr2-1, and axr4-1 Arabidopsis mutants have normal responses to low P availability conditions, whereas the iaa28-1 mutant shows resistance to the stimulatory effects of low P on root hair and lateral root formation. Analysis of ethylene signaling mutants and treatments with 1-aminocyclopropane-1-carboxylic acid showed that ethylene does not promote lateral root formation under P deprivation. These results suggest that in Arabidopsis, auxin sensitivity may play a fundamental role in the modifications of root architecture by P availability. PMID:12011355

Streaming potential method for characterizing interaction of electrical double layers between rice roots and Fe/Al oxide-coated quartz in situ.

PubMed

Liu, Zhao-Dong; Wang, Hai-Cui; Li, Jiu-Yu; Xu, Ren-Kou

2017-10-01

The interaction between rice roots and Fe/Al oxide-coated quartz was investigated through zeta potential measurements and column leaching experiments in present study. The zeta potentials of rice roots, Fe/Al oxide-coated quartz, and the binary systems containing rice roots and Fe/Al oxide-coated quartz were measured by a specially constructed streaming potential apparatus. The interactions between rice roots and Fe/Al oxide-coated quartz particles were evaluated/deduced based on the differences of zeta potentials between the binary systems and the single system of rice roots. The zeta potentials of the binary systems moved in positive directions compared with that of rice roots, suggesting that there were overlapping of diffuse layers of electric double layers on positively charged Fe/Al oxide-coated quartz and negatively charged rice roots and neutralization of positive charge on Fe/Al oxide-coated quartz with negative charge on rice roots. The greater amount of positive charges on Al oxide led to the stronger interaction of Al oxide-coated quartz with rice roots and the more shift of zeta potential compared with Fe oxide. The overlapping of diffuse layers on Fe/Al oxide-coated quartz and rice roots was confirmed by column leaching experiments. The greater overlapping of diffuse layers on Al oxide and rice roots led to more simultaneous adsorptions of K + and NO 3 - and greater reduction in leachate electric conductivity when the column containing Al oxide-coated quartz and rice roots was leached with KNO 3 solution, compared with the columns containing rice roots and Fe oxide-coated quartz or quartz. When the KNO 3 solution was replaced with deionized water to flush the columns, more K + and NO 3 - were desorbed from the binary system containing Al oxide-coated quartz and rice roots than from other two binary systems, suggesting that the stronger electrostatic interaction between Al oxide and rice roots promoted the desorption of K + and NO 3 - from the binary system and enhanced overlapping of diffuse layers on these oppositely charged surfaces compared with other two binary systems. In conclusion, the overlapping of diffuse layers occurred between positively charged Fe/Al oxides and rice roots, which led to neutralization of opposite charge and affected adsorption and desorption of ions onto and from the charged surfaces of Fe/Al oxides and rice roots.

Water resources of the Root River watershed, southeastern Minnesota

USGS Publications Warehouse

Broussard, W.L.; Farrell, D.F.; Anderson, H.W.; Felsheim, P.E.

1975-01-01

This Hydrologic Atlas is one of a series describing the 39 watersheds in Minnesota. The Root River watershed includes Houston, Winona, and parts of the surrounding counties. The 2 ,570 square miles in the watershed varies from gently rolling prairie in the west to an area of plateaus separated by valleys deeply incised into bedrock in the north and east. The average annual water budget for 30 years shows 29.5 inches of precipitation, 7.2 inches of surface runoff, and 22.3 inches of evapotranspiration. Water use in millions of gallons for 1970 was established at 7,310 of ground water and 6,700 of surface water. Domestic supplies accounted for less than one fourth and thermoelectric power for about one half of the total use. All 33 municipalities use ground water from bedrock aquifers, and 21 of those obtain at least part of their supply from the Prairie du Chien-Jordan aquifer. Many private domestic wells are completed in a shallow limestone aquifer. The ground-water system is recharged primarily by infiltrating precipitation in upland areas Ground-water movement is indicated by water-table and potentiometric maps and section diagrams. Water from bedrock and glacial aquifers generally is of acceptable quality for domestic use, dissolved solids generally less than 400 mg/liter very hard , and locally high iron content. The Mount Simon-Red clastics aquifer is locally saline. Runoff is greatest during the spring when snowmelt occurs and the soils are generally saturated.

Shallow Geothermal Admissibility Maps: a Methodology to Achieve a Sustainable Development of Shallow Geothermal Energy with Regards to Groundwater Resources

NASA Astrophysics Data System (ADS)

Bréthaut, D.; Parriaux, A.; Tacher, L.

2009-04-01

Implantation and use of shallow geothermal systems may have environmental impacts. Traditionally, risks are divided into 2 categories: direct and indirect. Direct risks are linked with the leakage of the circulating fluid (usually water with anti-freeze) of ground source heat pumps into the underground which may be a source of contamination. Indirect risks are linked with the borehole itself and the operation of the systems which can modify the groundwater flow, change groundwater temperature and chemistry, create bypasses from the surfaces to the aquifers or between two aquifers. Groundwater source heat pumps (GWSHP) may provoke indirect risks, while ground source heat pumps (GSHP) may provoke both direct and indirect risks. To minimize those environmental risks, the implantation of shallow geothermal systems must be regulated. In 2007, more than 7000 GSHP have been installed in Switzerland, which represents 1.5 Mio drilled meters. In the canton of Vaud, each shallow geothermal project has to be approved by the Department of the Environment. Approximately 1500 demands have been treated during 2007, about 15 times more than in 1990. Mapping shallow geothermal systems implantation restrictions due to environmental constrains permits: 1) to optimize the management and planning of the systems, 2) to minimize their impact on groundwater resources and 3) to facilitate administrative procedures for treating implantation demands. Such maps are called admissibility maps. Here, a methodology to elaborate them is presented and tested. Interactions between shallow geothermal energy and groundwater resources have been investigated. Admissibility criteria are proposed and structured into a flow chart which provides a decision making tool for shallow geothermal systems implantation. This approach has been applied to three areas of West Switzerland ranging from 2 to 6 km2. For each area, a geological investigation has been realized and complementary territorial information (e.g. map of contaminated areas) was gathered in order to produce the admissibility maps. For one area, a more detailed study has been performed and a complete 3D geological model has been constructed using an in-house modelling software called GeoShape. The model was then imported into a geographical information system which has been used to realize the admissibility map. Resulting maps were judged to be consistent and satisfying. In a second part of the project, this method will be applied at a larger scale. An admissibility map of the canton of Vaud (3200 km2) will be created. Considering the fast growth of the number of implanted GSHP and GWSHP throughout the world, it is clear that admissibility maps will play a major role in developing shallow geothermal energy as an environmentally friendly and sustainable resource.

Accounting for sap flow from different parts of the root system improves the prediction of xylem ABA concentration in plants grown with heterogeneous soil moisture.

PubMed

Dodd, Ian C; Egea, Gregorio; Davies, William J

2008-01-01

When soil moisture is heterogeneous, sap flow from, and ABA status of, different parts of the root system impact on leaf xylem ABA concentration ([X-ABA]leaf). The robustness of a model for predicting [X-ABA]leaf was assessed. 'Two root-one shoot' grafted sunflower (Helianthus annuus L.) plants received either deficit irrigation (DI, each root system received the same irrigation volumes) or partial rootzone drying (PRD, only one root system was watered and the other dried the soil). Irrespective of whether relative sap flow was assessed using sap flow sensors in vivo or by pressurization of de-topped roots, each root system contributed similarly to total sap flow during DI, while sap flow from roots in drying soil declined linearly with soil water potential (Psisoil) during PRD. Although Psisoil of the irrigated pot determined the threshold Psisoil at which sap flow from roots in drying soil decreased, the slope of this decrease was independent of the wet pot Psisoil. Irrespective of whether sap was collected from the wet or dry root system of PRD plants, or a DI plant, root xylem ABA concentration increased as Psisoil declined. The model, which weighted ABA contributions of each root system according to the sap flow from each, almost perfectly explained [X-ABA] immediately above the graft union. That the model overestimated measured [X-ABA]leaf may result from changes in [X-ABA] along the transport pathway or an artefact of collecting xylem sap from detached leaves. The implications of declining sap flow through partially dry roots during PRD for the control of stomatal behaviour and irrigation scheduling are discussed.

RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation.

PubMed

Jeudy, Christian; Adrian, Marielle; Baussard, Christophe; Bernard, Céline; Bernaud, Eric; Bourion, Virginie; Busset, Hughes; Cabrera-Bosquet, Llorenç; Cointault, Frédéric; Han, Simeng; Lamboeuf, Mickael; Moreau, Delphine; Pivato, Barbara; Prudent, Marion; Trouvelot, Sophie; Truong, Hoai Nam; Vernoud, Vanessa; Voisin, Anne-Sophie; Wipf, Daniel; Salon, Christophe

2016-01-01

In order to maintain high yields while saving water and preserving non-renewable resources and thus limiting the use of chemical fertilizer, it is crucial to select plants with more efficient root systems. This could be achieved through an optimization of both root architecture and root uptake ability and/or through the improvement of positive plant interactions with microorganisms in the rhizosphere. The development of devices suitable for high-throughput phenotyping of root structures remains a major bottleneck. Rhizotrons suitable for plant growth in controlled conditions and non-invasive image acquisition of plant shoot and root systems (RhizoTubes) are described. These RhizoTubes allow growing one to six plants simultaneously, having a maximum height of 1.1 m, up to 8 weeks, depending on plant species. Both shoot and root compartment can be imaged automatically and non-destructively throughout the experiment thanks to an imaging cabin (RhizoCab). RhizoCab contains robots and imaging equipment for obtaining high-resolution pictures of plant roots. Using this versatile experimental setup, we illustrate how some morphometric root traits can be determined for various species including model (Medicago truncatula), crops (Pisum sativum, Brassica napus, Vitis vinifera, Triticum aestivum) and weed (Vulpia myuros) species grown under non-limiting conditions or submitted to various abiotic and biotic constraints. The measurement of the root phenotypic traits using this system was compared to that obtained using "classic" growth conditions in pots. This integrated system, to include 1200 Rhizotubes, will allow high-throughput phenotyping of plant shoots and roots under various abiotic and biotic environmental conditions. Our system allows an easy visualization or extraction of roots and measurement of root traits for high-throughput or kinetic analyses. The utility of this system for studying root system architecture will greatly facilitate the identification of genetic and environmental determinants of key root traits involved in crop responses to stresses, including interactions with soil microorganisms.

Characterizing the Physics of Plant Root Gravitropism: A Systems Modeling Approach

DTIC Science & Technology

1999-01-01

with its root directly downward, the root and stem undergo a gravitropic response. Statoliths (gravity-sensing organelles) within the root cap respond...this study is to model the plant root gravitropic response using classical controls and system identification principles. Specific objectives of this

Characterizing a shallow groundwater system beneath irrigated sugarcane with electrical resistivity and radon (Rn-222), Puunene, Hawaii

USDA-ARS?s Scientific Manuscript database

In this study, we use a combination of electrical resistivity profiling and radon (222Rn) measurements to characterize a shallow groundwater system beneath the last remaining, large-scale sugarcane plantation on Maui, Hawaii. Hawaiian Commercial & Sugar Company has continuously operated a sugarcane...

Yield response and economics of shallow subsurface drip irrigation systems

USDA-ARS?s Scientific Manuscript database

Field tests were conducted using shallow subsurface drip irrigation (S3DI) on cotton (Gossypium hirsutum, L.), corn (Zea mays, L.), and peanut (Arachis hypogeae, L.) in rotation to investigate yield potential and economic sustainability of this irrigation system technique over a six year period. Dri...

In-Situ Hydraulic Conductivities of Soils and Anomalies at a Future Biofuel Production Site

NASA Astrophysics Data System (ADS)

Williamson, M. F.; Jackson, C. R.; Hale, J. C.; Sletten, H. R.

2010-12-01

Forested hillslopes of the Upper Coastal Plain at the Savannah River Site, SC, feature a shallow clay loam argillic layer with low median saturated hydraulic conductivity. Observations from a grid of shallow, maximum-rise piezometers indicate that perching on this clay layer is common. However, flow measurements from an interflow-interception trench indicate that lateral flow is rare and most soil water percolates through the clay layer. We hypothesize that the lack of frequent lateral flow is due to penetration of the clay layer by roots of pine trees. We used ground penetrating radar (GPR) to map the soil structure and potential anomalies, such as root holes, down to two meters depth at three 10×10-m plots. At each plot, a 1×10-m trench was later back-hoe excavated along a transect that showed the most anomalies on the GPR maps. Each trench was excavated at 0.5-m intervals until the clay layer was reached (two plots were excavated to a final depth of 0.875 m and the third plot was excavated to a final depth of 1.0 m). At each interval, compact constant-head permeameters (CCHPs) were used to measure in-situ hydraulic conductivities in the clay-loam matrix and in any visually apparent anomalies. Conductivity was also estimated using a second 1×10-m transect of CCHP measurements taken within randomly placed augur holes. Additional holes targeted GPR anomalies. The second transect was created in case the back-hoe impacted conductivity readings. High-conductivity anomalies were also visually investigated by excavating with a shovel. Photographs of soil wetness were taken at visually apparent anomalies with a multispectral camera. We discovered that all visually apparent anomalies found are represented on the GPR maps, but that not all of the predicted anomalies on the GPR maps are visually apparent. We discovered that tree root holes create anomalies, but that there were also many conductivity anomalies that could not be visually distinguished from low-conductivity soil.

On the Acquisition of Some Basic Word Spelling Mechanisms in a Deep (French) and a Shallow (Spanish) System

ERIC Educational Resources Information Center

Carrillo, Maria Soledad; Alegria, Jesus; Marin, Javier

2013-01-01

An experiment was carried out to compare the time course of the acquisition of two basic spelling mechanisms in Spanish, a shallow system, and French, a deep system. The first was lexical. It relies on the orthographic lexicon, a hypothetical structure containing the orthographic representations of words accessible for word spelling. To evaluate…

[Effects of arbuscular mycorrhizal fungi on root system morphology and sucrose and glucose contents of Poncirus trifoliata].

PubMed

Zou, Ying-Ning; Wu, Qiang-Sheng; Li, Yan; Huang, Yong-Ming

2014-04-01

The effects of inoculation with Glomus mosseae, G. versiforme, and their mixture on plant growth, root system morphology, and sucrose and glucose contents of trifoliate orange (Poncirus trifoliata L.) were studied by pot culture. The results showed that all the inoculated treatments significantly increased the plant height, stem diameter, leaf number, and shoot and root biomass. In addition, the mycorrhizal treatments significantly increased the number of 1st, 2nd, and 3rd lateral roots. Inoculation with arbuscular mycorrhizal fungi significantly increased the root projected area, surface area, volume, and total root length (mainly 0-1 cm root length), but decreased the root average diameter. Meanwhile, G. versiforme showed the best effects. Mycorrhizal inoculation significantly increased the leaf sucrose and root glucose contents, but decreased the leaf glucose and root sucrose contents. Owing to the 'mycorrhizal carbon pool' in roots, inoculation with arbuscular mycorrhizal fungi resulted in high glucose content and low sucrose content of roots, which would facilitate the root growth and development, thereby the establishment of better root system morphology of host plants.

Sedum-dominated green-roofs in a semi-arid region increase CO2 concentrations during the dry season.

PubMed

Agra, Har'el; Klein, Tamir; Vasl, Amiel; Shalom, Hadar; Kadas, Gyongyver; Blaustein, Leon

2017-04-15

Green roofs are expected to absorb and store carbon in plants and soils and thereby reduce the high CO 2 concentration levels in big cities. Sedum species, which are succulent perennials, are commonly used in extensive green roofs due to their shallow root system and ability to withstand long water deficiencies. Here we examined CO 2 fixation and emission rates for Mediterranean Sedum sediforme on green-roof experimental plots. During late winter to early spring, we monitored CO 2 concentrations inside transparent tents placed over 1m 2 plots and followed gas exchange at the leaf level using a portable gas-exchange system. We found high rates of CO 2 emission at daytime, which is when CO 2 concentration in the city is the highest. Both plot- and leaf-scale measurements showed that these CO 2 emissions were not fully compensated by the nighttime uptake. We conclude that although carbon sequestration may only be a secondary benefit of green roofs, for improving this ecosystem service, other plant species than Sedum should also be considered for use in green roofs, especially in Mediterranean and other semi-arid climates. Copyright © 2017 Elsevier B.V. All rights reserved.

Canal Transportation, Unprepared Areas, and Dentin Removal after Preparation with BT-RaCe and ProTaper Next Systems.

PubMed

Brasil, Sabrina C; Marceliano-Alves, Marília F; Marques, Márcia L; Grillo, João P; Lacerda, Mariane F L S; Alves, Flávio R F; Siqueira, José F; Provenzano, José C

2017-10-01

This study compared the shaping ability of ProTaper Next (Dentsply Sirona, Tulsa, OK) and BT-RaCe (FKG Dentaire, La Chaux-de-Fonds, Switzerland) instrument systems in the mesial canals of mandibular molars using micro-computed tomographic (micro-CT) imaging. A total of 17 type IV mesial roots of extracted first mandibular molars were scanned using micro-CT imaging before and after root canal preparation with the 2 instrument systems. Both systems were used in the same root but alternating the mesial canals from root to root. The following parameters were analyzed: root canal volume, surface area, unprepared surface areas, transportation, canal/root width ratio, and preparation time. There were no statistically significant differences between the 2 systems for all evaluated parameters (P > .05). The unprepared surface areas for the full canal length and the apical 5-mm segment were 33% and 14% for BT-RaCe and 31% and 14% for ProTaper Next, respectively. After preparation, all root canals had a diameter that was not larger than 35% of the root diameter at the coronal and middle segments. The 2 systems showed no differences in any of the evaluated shaping parameters. None of the tested systems put the roots at risk of fracture because of excessive dentin removal. Copyright © 2017 American Association of Endodontists. Published by Elsevier Inc. All rights reserved.

The Late Oligocene to Early Miocene early evolution of rifting in the southwestern part of the Roer Valley Graben

NASA Astrophysics Data System (ADS)

Deckers, Jef

2016-06-01

The Roer Valley Graben is a Mesozoic continental rift basin that was reactivated during the Late Oligocene. The study area is located in the graben area of the southwestern part of the Roer Valley Graben. Rifting initiated in the study area with the development of a large number of faults in the prerift strata. Some of these faults were rooted in preexisting zones of weakness in the Mesozoic strata. Early in the Late Oligocene, several faults died out in the study area as strain became focused upon others, some of which were able to link into several-kilometer-long systems. Within the Late Oligocene to Early Miocene northwestward prograding shallow marine syn-rift deposits, the number of active faults further decreased with time. A relatively strong decrease was observed around the Oligocene/Miocene boundary and represents a further focus of strain onto the long fault systems. Miocene extensional strain was not accommodated by further growth, but predominantly by displacements along the long fault systems. Since the Oligocene/Miocene boundary coincides with a radical change in the European intraplate stress field, the latter might have contributed significantly to the simultaneous change of fault kinematics in the study area.

Amniotic membrane - A Novel material for the root coverage: A case series

PubMed Central

Sharma, Anamika; Yadav, Komal

2015-01-01

Background: Periodontal plastic surgical procedures aimed at coverage of exposed root surface. Owing to the second surgical donor site and difficulty in procuring a sufficient graft for the treatment of root coverage procedures, various alternative additive membranes have been used. A recent resorbable amniotic membrane, not only maintains the structural and anatomical configuration of regenerated tissues, but also enhances gingival wound healing, provides a rich source of stem cells. Therefore, amniotic membrane is choice of material these days in augmenting the better results in various periodontal procedures. Aim: The aim of this observational case series was to evaluate the effectiveness, predictability and the use of a novel material, amniotic membrane in the treatment of shallow-to-moderate isolated recession defects. Materials and Methods: A total of three cases, showing Miller's Class I or Class II gingival recession, participated in this study. Recession depth, recession width, keratinized gingiva (KG) tissue width, clinical attachment level (CAL) were recorded at baseline, 3 and 6 months postoperatively. Results: Six months following root coverage procedures, the mean root coverage was found to be 70.2 ± 6.8%. CAL significantly decreased from 6.4 ± 0.54 mm preoperatively to 3.5 ± 0.9 mm postoperatively at 6 months while KG showed significant improvement from 3.2 ± 0.28 mm preoperatively to 5.9 ± 0.74 mm postoperatively at 6 months. Conclusion: Autogenous graft tissue procurement significantly increases patient morbidity while also lengthening the duration of surgery in placing the graft, while self-adherent nature of amniotic membrane significantly reduces surgical time and made the procedure easier to perform, making it membrane of choice. PMID:26392696

Controls on ecosystem and root respiration across a permafrost and wetland gradient in interior Alaska

USGS Publications Warehouse

McConnell, Nicole A.; Turetsky, Merritt R.; McGuire, A. David; Kane, Evan S.; Waldrop, Mark P.; Harden, Jennifer W.

2013-01-01

Permafrost is common to many northern wetlands given the insulation of thick organic soil layers, although soil saturation in wetlands can lead to warmer soils and increased thaw depth. We analyzed five years of soil CO2 fluxes along a wetland gradient that varied in permafrost and soil moisture conditions. We predicted that communities with permafrost would have reduced ecosystem respiration (ER) but greater temperature sensitivity than communities without permafrost. These predictions were partially supported. The colder communities underlain by shallow permafrost had lower ecosystem respiration (ER) than communities with greater active layer thickness. However, the apparent Q10 of monthly averaged ER was similar in most of the vegetation communities except the rich fen, which had smaller Q10 values. Across the gradient there was a negative relationship between water table position and apparent Q10, showing that ER was more temperature sensitive under drier soil conditions. We explored whether root respiration could account for differences in ER between two adjacent communities (sedge marsh and rich fen), which corresponded to the highest and lowest ER, respectively. Despite differences in root respiration rates, roots contributed equally (~40%) to ER in both communities. Also, despite similar plant biomass, ER in the rich fen was positively related to root biomass, while ER in the sedge marsh appeared to be related more to vascular green area. Our results suggest that ER across this wetland gradient was temperature-limited, until conditions became so wet that respiration became oxygen-limited and influenced less by temperature. But even in sites with similar hydrology and thaw depth, ER varied significantly likely based on factors such as soil redox status and vegetation composition.

Root architecture impacts on root decomposition rates in switchgrass

NASA Astrophysics Data System (ADS)

de Graaff, M.; Schadt, C.; Garten, C. T.; Jastrow, J. D.; Phillips, J.; Wullschleger, S. D.

2010-12-01

Roots strongly contribute to soil organic carbon accrual, but the rate of soil carbon input via root litter decomposition is still uncertain. Root systems are built up of roots with a variety of different diameter size classes, ranging from very fine to very coarse roots. Since fine roots have low C:N ratios and coarse roots have high C:N ratios, root systems are heterogeneous in quality, spanning a range of different C:N ratios. Litter decomposition rates are generally well predicted by litter C:N ratios, thus decomposition of roots may be controlled by the relative abundance of fine versus coarse roots. With this study we asked how root architecture (i.e. the relative abundance of fine versus coarse roots) affects the decomposition of roots systems in the biofuels crop switchgrass (Panicum virgatum L.). To understand how root architecture affects root decomposition rates, we collected roots from eight switchgrass cultivars (Alamo, Kanlow, Carthage, Cave-in-Rock, Forestburg, Southlow, Sunburst, Blackwell), grown at FermiLab (IL), by taking 4.8-cm diameter soil cores from on top of the crown and directly next to the crown of individual plants. Roots were carefully excised from the cores by washing and analyzed for root diameter size class distribution using WinRhizo. Subsequently, root systems of each of the plants (4 replicates per cultivar) were separated in 'fine' (0-0.5 mm), 'medium' (0.5-1 mm) and 'coarse' roots (1-2.5 mm), dried, cut into 0.5 cm (medium and coarse roots) and 2 mm pieces (fine roots), and incubated for 90 days. For each of the cultivars we established five root-treatments: 20g of soil was amended with 0.2g of (1) fine roots, (2) medium roots, (3) coarse roots, (4) a 1:1:1 mixture of fine, medium and coarse roots, and (5) a mixture combining fine, medium and coarse roots in realistic proportions. We measured CO2 respiration at days 1, 3, 7, 15, 30, 60 and 90 during the experiment. The 13C signature of the soil was -26‰, and the 13C signature of plants was -12‰, enabling us to differentiate between root-derived C and native SOM-C respiration. We found that the relative abundance of fine, medium and coarse roots were significantly different among cultivars. Root systems of Alamo, Kanlow and Cave-in-Rock were characterized by a large abundance of coarse-, relative to fine roots, whereas Carthage, Forestburg and Blackwell had a large abundance of fine, relative to coarse roots. Fine roots had a 28% lower C:N ratio than medium and coarse roots. These differences led to different root decomposition rates. We conclude that root architecture should be taken into account when predicting root decomposition rates; enhanced understanding of the mechanisms of root decomposition will improve model predictions of C input to soil organic matter.

DigR: a generic model and its open source simulation software to mimic three-dimensional root-system architecture diversity.

PubMed

Barczi, Jean-François; Rey, Hervé; Griffon, Sébastien; Jourdan, Christophe

2018-04-18

Many studies exist in the literature dealing with mathematical representations of root systems, categorized, for example, as pure structure description, partial derivative equations or functional-structural plant models. However, in these studies, root architecture modelling has seldom been carried out at the organ level with the inclusion of environmental influences that can be integrated into a whole plant characterization. We have conducted a multidisciplinary study on root systems including field observations, architectural analysis, and formal and mathematical modelling. This integrative and coherent approach leads to a generic model (DigR) and its software simulator. Architecture analysis applied to root systems helps at root type classification and architectural unit design for each species. Roots belonging to a particular type share dynamic and morphological characteristics which consist of topological and geometric features. The DigR simulator is integrated into the Xplo environment, with a user interface to input parameter values and make output ready for dynamic 3-D visualization, statistical analysis and saving to standard formats. DigR is simulated in a quasi-parallel computing algorithm and may be used either as a standalone tool or integrated into other simulation platforms. The software is open-source and free to download at http://amapstudio.cirad.fr/soft/xplo/download. DigR is based on three key points: (1) a root-system architectural analysis, (2) root type classification and modelling and (3) a restricted set of 23 root type parameters with flexible values indexed in terms of root position. Genericity and botanical accuracy of the model is demonstrated for growth, branching, mortality and reiteration processes, and for different root architectures. Plugin examples demonstrate the model's versatility at simulating plastic responses to environmental constraints. Outputs of the model include diverse root system structures such as tap-root, fasciculate, tuberous, nodulated and clustered root systems. DigR is based on plant architecture analysis which leads to specific root type classification and organization that are directly linked to field measurements. The open source simulator of the model has been included within a friendly user environment. DigR accuracy and versatility are demonstrated for growth simulations of complex root systems for both annual and perennial plants.

Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform1[C][W][OA

PubMed Central

Clark, Randy T.; MacCurdy, Robert B.; Jung, Janelle K.; Shaff, Jon E.; McCouch, Susan R.; Aneshansley, Daniel J.; Kochian, Leon V.

2011-01-01

A novel imaging and software platform was developed for the high-throughput phenotyping of three-dimensional root traits during seedling development. To demonstrate the platform’s capacity, plants of two rice (Oryza sativa) genotypes, Azucena and IR64, were grown in a transparent gellan gum system and imaged daily for 10 d. Rotational image sequences consisting of 40 two-dimensional images were captured using an optically corrected digital imaging system. Three-dimensional root reconstructions were generated and analyzed using a custom-designed software, RootReader3D. Using the automated and interactive capabilities of RootReader3D, five rice root types were classified and 27 phenotypic root traits were measured to characterize these two genotypes. Where possible, measurements from the three-dimensional platform were validated and were highly correlated with conventional two-dimensional measurements. When comparing gellan gum-grown plants with those grown under hydroponic and sand culture, significant differences were detected in morphological root traits (P < 0.05). This highly flexible platform provides the capacity to measure root traits with a high degree of spatial and temporal resolution and will facilitate novel investigations into the development of entire root systems or selected components of root systems. In combination with the extensive genetic resources that are now available, this platform will be a powerful resource to further explore the molecular and genetic determinants of root system architecture. PMID:21454799

Effects of using a posteriori methods for the conservation of integral invariants. [for weather forecasting

NASA Technical Reports Server (NTRS)

Takacs, Lawrence L.

1988-01-01

The nature and effect of using a posteriori adjustments to nonconservative finite-difference schemes to enforce integral invariants of the corresponding analytic system are examined. The method of a posteriori integral constraint restoration is analyzed for the case of linear advection, and the harmonic response associated with the a posteriori adjustments is examined in detail. The conservative properties of the shallow water system are reviewed, and the constraint restoration algorithm applied to the shallow water equations are described. A comparison is made between forecasts obtained using implicit and a posteriori methods for the conservation of mass, energy, and potential enstrophy in the complete nonlinear shallow-water system.

Nursery Cultural Practices and Morphological Arrtibutes of Longleaf Pine Bare-Root Stock as Indicators of Early Field Performance

Treesearch

Glyndon E. Hatchell; H. David Muse

1990-01-01

Longleaf pine seedlings performed satisfactorily after planting on deep sands in South Carolina in dry years when: (1) They were vertically root-pruned in the nursery. (2) They had 14 or more first-order lateral roots and nonfibrous root systems. (3) They had six or more first-order lateral roots and highly fibrous root systems.

In situ phytoremediation of arsenic- and metal-polluted pyrite waste with field crops: effects of soil management.

PubMed

Vamerali, Teofilo; Bandiera, Marianna; Mosca, Giuliano

2011-05-01

Sunflower, alfalfa, fodder radish and Italian ryegrass were cultivated in severely As-Cd-Co-Cu-Pb-Zn-contaminated pyrite waste discharged in the past and capped with 0.15m of unpolluted soil at Torviscosa (Italy). Plant growth and trace element uptake were compared under ploughing and subsoiling tillages (0.3m depth), the former yielding higher contamination (∼30%) in top soil. Tillage choice was not critical for phytoextraction, but subsoiling enhanced above-ground productivity, whereas ploughing increased trace element concentrations in plants. Fodder radish and sunflower had the greatest aerial biomass, and fodder radish the best trace element uptake, perhaps due to its lower root sensitivity to pollution. Above-ground removals were generally poor (maximum of 33mgm(-2) of various trace elements), with Zn (62%) and Cu (18%) as main harvested contaminants. The most significant finding was of fine roots proliferation in shallow layers that represented a huge sink for trace element phytostabilisation. It is concluded that phytoextraction is generally far from being an efficient management option in pyrite waste. Sustainable remediation requires significant improvements of the vegetation cover to stabilise the site mechanically and chemically, and provide precise quantification of root turnover. Copyright © 2011 Elsevier Ltd. All rights reserved.

Southern hemisphere craton modification by plume-lithosphere interaction

NASA Astrophysics Data System (ADS)

Hu, J.; Liu, L.; Faccenda, M.; Zhou, Q.; Fischer, K. M.; Marshak, S.; Lundstrom, C.

2017-12-01

The longevity of cratons is generally attributed to neutrally-to-positively buoyant and mechanically strong lithosphere that shields the cratonic crust from underlying mantle dynamics. Large portions of the cratonic lithospheres in South America and Africa, however, have experienced significant modification since the Mesozoic, as demonstrated by widespread Cretaceous uplift and volcanism, present-day high topography, thin crust, and the presence of seismically fast but neutrally buoyant upper-mantle anomalies. We show that these observations reflect a permanent increase in lithospheric buoyancy due to plume-triggered lithosphere deformation and deep lithospheric loss during Late Cretaceous to early Tertiary, as further evidenced by positive lithosphere residual topography, negative lithosphere residual gravity and the realignment of seismic anisotropy in the cratonic roots. Lithosphere in these regions has been thermally reestablished since then, as confirmed by its present-day low heat flow and high seismic velocities. We conclude that lowermost cratonic lithospheres is compositionally denser than the asthenospheric mantle and can be episodically removed when perturbed by underlying mantle dynamics, while the shallower buoyant lithosphere helps to stabilize cratonic crust over billions of years. We further propose that zones where lithosphere was lost would take tens of millions of years to recover thermally, but the density of the new thermal root would remain less than that of the intact root.

Vadose zone microbiology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kieft, Thomas L.; Brockman, Fred J.

2001-01-17

The vadose zone is defined as the portion of the terrestrial subsurface that extends from the land surface downward to the water table. As such, it comprises the surface soil (the rooting zone), the underlying subsoil, and the capillary fringe that directly overlies the water table. The unsaturated zone between the rooting zone and the capillary fringe is termed the "intermediate zone" (Chapelle, 1993). The vadose zone has also been defined as the unsaturated zone, since the sediment pores and/or rock fractures are generally not completely water filled, but instead contain both water and air. The latter characteristic results inmore » the term "zone of aeration" to describe the vadose zone. The terms "vadose zone," "unsaturated zone", and "zone of aeration" are nearly synonymous, except that the vadose zone may contain regions of perched water that are actually saturated. The term "subsoil" has also been used for studies of shallow areas of the subsurface immediately below the rooting zone. This review focuses almost exclusively on the unsaturated region beneath the soil layer since there is already an extensive body of literature on surface soil microbial communities and process, e.g., Paul and Clark (1989), Metting (1993), Richter and Markowitz, (1995), and Sylvia et al. (1998); whereas the deeper strata of the unsaturated zone have only recently come under scrutiny for their microbiological properties.« less

Comparison of the ultrastructure of conventionally fixed and high pressure frozen/freeze substituted root tips of Nicotiana and Arabidopsis

NASA Technical Reports Server (NTRS)

Kiss, J. Z.; Giddings, T. H. Jr; Staehelin, L. A.; Sack, F. D.

1990-01-01

To circumvent the limitations of chemical fixation (CF) and to gain more reliable structural information about higher plant tissues, we have cryofixed root tips of Nicotiana and Arabidopsis by high pressure freezing (HPF). Whereas other freezing techniques preserve tissue to a relatively shallow depth, HPF in conjunction with freeze substitution (FS) resulted in excellent preservation of entire root tips. Compared to CF, in tissue prepared by HPF/FS: (1) the plasmalemma and all internal membranes were much smoother and often coated on the cytoplasmic side by a thin layer of stained material, (2) the plasmalemma was appressed to the cell wall, (3) organelle profiles were rounder, (4) the cytoplasmic, mitochondrial, and amyloplast matrices were denser, (5) vacuoles contained electron dense material, (6) microtubules appeared to be more numerous and straighter, with crossbridges observed between them, (7) cisternae of endoplasmic reticulum (ER) were wider and filled with material, (8) Golgi intercisternal elements were more clearly resolved and were observed between both Golgi vesicles and cisternae, and (9) larger vesicles were associated with Golgi stacks. This study demonstrates that HPF/FS can be used to successfully preserve the ultrastructure of relatively large plant tissues without the use of intracellular cryoprotectants.

Hurricane-induced failure of low salinity wetlands

PubMed Central

Howes, Nick C.; FitzGerald, Duncan M.; Hughes, Zoe J.; Georgiou, Ioannis Y.; Kulp, Mark A.; Miner, Michael D.; Smith, Jane M.; Barras, John A.

2010-01-01

During the 2005 hurricane season, the storm surge and wave field associated with Hurricanes Katrina and Rita eroded 527 km2 of wetlands within the Louisiana coastal plain. Low salinity wetlands were preferentially eroded, while higher salinity wetlands remained robust and largely unchanged. Here we highlight geotechnical differences between the soil profiles of high and low salinity regimes, which are controlled by vegetation and result in differential erosion. In low salinity wetlands, a weak zone (shear strength 500–1450 Pa) was observed ∼30 cm below the marsh surface, coinciding with the base of rooting. High salinity wetlands had no such zone (shear strengths > 4500 Pa) and contained deeper rooting. Storm waves during Hurricane Katrina produced shear stresses between 425–3600 Pa, sufficient to cause widespread erosion of the low salinity wetlands. Vegetation in low salinity marshes is subject to shallower rooting and is susceptible to erosion during large magnitude storms; these conditions may be exacerbated by low inorganic sediment content and high nutrient inputs. The dramatic difference in resiliency of fresh versus more saline marshes suggests that the introduction of freshwater to marshes as part of restoration efforts may therefore weaken existing wetlands rendering them vulnerable to hurricanes. PMID:20660777

GiA Roots: software for the high throughput analysis of plant root system architecture.

PubMed

Galkovskyi, Taras; Mileyko, Yuriy; Bucksch, Alexander; Moore, Brad; Symonova, Olga; Price, Charles A; Topp, Christopher N; Iyer-Pascuzzi, Anjali S; Zurek, Paul R; Fang, Suqin; Harer, John; Benfey, Philip N; Weitz, Joshua S

2012-07-26

Characterizing root system architecture (RSA) is essential to understanding the development and function of vascular plants. Identifying RSA-associated genes also represents an underexplored opportunity for crop improvement. Software tools are needed to accelerate the pace at which quantitative traits of RSA are estimated from images of root networks. We have developed GiA Roots (General Image Analysis of Roots), a semi-automated software tool designed specifically for the high-throughput analysis of root system images. GiA Roots includes user-assisted algorithms to distinguish root from background and a fully automated pipeline that extracts dozens of root system phenotypes. Quantitative information on each phenotype, along with intermediate steps for full reproducibility, is returned to the end-user for downstream analysis. GiA Roots has a GUI front end and a command-line interface for interweaving the software into large-scale workflows. GiA Roots can also be extended to estimate novel phenotypes specified by the end-user. We demonstrate the use of GiA Roots on a set of 2393 images of rice roots representing 12 genotypes from the species Oryza sativa. We validate trait measurements against prior analyses of this image set that demonstrated that RSA traits are likely heritable and associated with genotypic differences. Moreover, we demonstrate that GiA Roots is extensible and an end-user can add functionality so that GiA Roots can estimate novel RSA traits. In summary, we show that the software can function as an efficient tool as part of a workflow to move from large numbers of root images to downstream analysis.

Technological advances in endodontics: treatment of a mandibular molar with internal root resorption using a reciprocating single-file system.

PubMed

de Souza, Samir Noronha; Marques, André Augusto Franco; Sponchiado-Júnior, EmÍlio Carlos; Roberti Garcia, Lucas da Fonseca; da Frota, Matheus Franco; de Carvalho, Fredson Márcio Acris

2017-01-01

The field of endodontics has become increasingly successful due to technological advances that allow clinicians to solve clinical cases that would have been problematic a few years ago. Despite such advances, endodontic treatment of teeth with internal root resorption remains challenging. This article presents a clinical case in which a reciprocating single-file system was used for endodontic treatment of a mandibular molar with internal root resorption. Radiographic examination revealed the presence of internal root resorption in the distobuccal root canal of the mandibular right first molar. A reciprocating single-file system was used for root canal instrumentation and final preparation, and filling was obtained through a thermal compaction technique. No painful symptoms or periapical lesions were observed in 12 months of follow-up. The results indicate that a reciprocating single-file system is an adequate alternative for root canal instrumentation, particularly in teeth with internal root resorption.

Morphological evaluation of maxillary second molars with fused roots: a micro-CT study.

PubMed

Ordinola-Zapata, R; Martins, J N R; Bramante, C M; Villas-Boas, M H; Duarte, M H; Versiani, M A

2017-12-01

To evaluate the internal and external morphologies of fused-rooted maxillary second molars by means of micro-computed tomography (micro-CT) analysis. A total of 100 fused-rooted maxillary second molars from a Brazilian subpopulation were divided into six groups according to the root morphology. The samples were scanned at a resolution of 19.6 μm and evaluated with regard to the external morphology of the roots, the root canal configuration, the percentage frequency of C-shaped canals and isthmuses, as well as the morphology of the root canal system at 1, 2 and 3 mm from the anatomical apex of the fused roots. The most prevalent root canal fusions were type 1, mesiobuccal root fused with distobuccal root (32%), followed by type 3, DB root fused with P root (27%), and type 4, MB root fused with DB root, and P root fused with MB or DB roots (21%). The prevalence of C-shaped root canal systems were 22%. Depending on the type of root fusion, the percentage frequency of isthmuses in the apical level varied from 9.3% to 42.8%, whilst the presence of apical deltas ranged from 18.5% to 57.1% of teeth. The root canal system of maxillary second molars with fused roots may have a high incidence of merging canals, isthmuses, apical deltas and C-shaped configurations. © 2017 International Endodontic Journal. Published by John Wiley & Sons Ltd.

Hydraulic responses to extreme drought conditions in three co-dominant tree species in shallow soil over bedrock.

PubMed

Kukowski, Kelly R; Schwinning, Susanne; Schwartz, Benjamin F

2013-04-01

An important component of the hydrological niche involves the partitioning of water sources, but in landscapes characterized by shallow soils over fractured bedrock, root growth is highly constrained. We conducted a study to determine how physical constraints in the root zone affected the water use of three tree species that commonly coexist on the Edwards Plateau of central Texas; cedar elm (Ulmus crassifolia), live oak (Quercus fusiformis), and Ashe juniper (Juniperus ashei). The year of the study was unusually dry; minimum predawn water potentials measured in August were -8 MPa in juniper, less than -8 MPa in elm, and -5 MPa in oak. All year long, species used nearly identical water sources, based on stable isotope analysis of stem water. Sap flow velocities began to decline simultaneously in May, but the rate of decline was fastest for oak and slowest for juniper. Thus, species partitioned water by time when they could not partition water by source. Juniper lost 15-30 % of its stem hydraulic conductivity, while percent loss for oak was 70-75 %, and 90 % for elm. There was no tree mortality in the year of the study, but 2 years later, after an even more severe drought in 2011, we recorded 34, 14, 6, and 1 % mortality among oak, elm, juniper, and Texas persimmon (Diospyros texana), respectively. Among the study species, mortality rates ranked in the same order as the rate of sap flow decline in 2009. Among the angiosperms, mortality rates correlated with wood density, lending further support to the hypothesis that species with more cavitation-resistant xylem are more susceptible to catastrophic hydraulic failure under acute drought.

Multi-Dimensional Shallow Landslide Stability Analysis Suitable for Application at the Watershed Scale

NASA Astrophysics Data System (ADS)

Milledge, David; Bellugi, Dino; McKean, Jim; Dietrich, William E.

2013-04-01

Current practice in regional-scale shallow landslide hazard assessment is to adopt a one-dimensional slope stability representation. Such a representation cannot produce discrete landslides and thus cannot make predictions on landslide size. Furthermore, one-dimensional approaches cannot include lateral effects, which are known to be important in defining instability. Here we derive an alternative model that accounts for lateral resistance by representing the forces acting on each margin of an unstable block of soil. We model boundary frictional resistances using 'at rest' earth pressure on the lateral sides, and 'active' and 'passive' pressure, using the log-spiral method, on the upslope and downslope margins. We represent root reinforcement on each margin assuming that root cohesion declines exponentially with soil depth. We test our model's ability to predict failure of an observed landslide where the relevant parameters are relatively well constrained and find that our model predicts failure at the observed location and predicts that larger or smaller failures conformal to the observed shape are indeed more stable. We use a sensitivity analysis of the model to show that lateral reinforcement sets a minimum landslide size, and that the additional strength at the downslope boundary results in optimal shapes that are longer in the downslope direction. However, reinforcement effects alone cannot fully explain the size or shape distributions of observed landslides, highlighting the importance of the spatial pattern of key parameters (e.g. pore water pressure and soil depth) at the watershed scale. The application of the model at this scale requires an efficient method to find unstable shapes among an exponential number of candidates. In this context, the model allows a more extensive examination of the controls on landslide size, shape and location.

Restoration and Purification of Dissolved Organic Nitrogen by Bacteria and Phytoremediation in Shallow Eutrophic Lakes Sediments

NASA Astrophysics Data System (ADS)

Li, Xin; Yue, Yi

2018-06-01

Endogenous organic nitrogen loadings in lake sediments have increased with human activity in recent decades. A 6-month field study from two disparate shallow eutrophic lakes could partly reveal these issues by analysing seasonal variations of biodegradation and phytoremediation in the sediment. This paper describes the relationship between oxidation reduction potential, temperature, microbial activity and phytoremediation in nitrogen cycling by calculation degradative index of dissolved organic nitrogen and amino acid decomposition. The index was being positive in winter and negative in summer while closely positive correlated with biodegradation. Our analysis revealed that rather than anoxic condition, biomass is the primary factor to dissolved organic nitrogen distribution and decomposition. Some major amino acids statistics also confirm the above view. The comparisons of organic nitrogen and amino acid in abundance and seasons in situ provides that demonstrated plants cue important for nitrogen removal by their roots adsorption and immobilization. In conclusion, enhanced microbial activity and phytoremediation with the seasons will reduce the endogenous nitrogen loadings by the coupled mineralization and diagenetic process.

Elucidating the role of vegetation in the initiation of rainfall-induced shallow landslides: Insights from an extreme rainfall event in the Colorado Front Range

USGS Publications Warehouse

McGuire, Luke; Rengers, Francis K.; Kean, Jason W.; Coe, Jeffrey A.; Mirus, Benjamin B.; Baum, Rex L.; Godt, Jonathan W.

2016-01-01

More than 1100 debris flows were mobilized from shallow landslides during a rainstorm from 9 to 13 September 2013 in the Colorado Front Range, with the vast majority initiating on sparsely vegetated, south facing terrain. To investigate the physical processes responsible for the observed aspect control, we made measurements of soil properties on a densely forested north facing hillslope and a grassland-dominated south facing hillslope in the Colorado Front Range and performed numerical modeling of transient changes in soil pore water pressure throughout the rainstorm. Using the numerical model, we quantitatively assessed interactions among vegetation, rainfall interception, subsurface hydrology, and slope stability. Results suggest that apparent cohesion supplied by roots was responsible for the observed connection between debris flow initiation and slope aspect. Results suggest that future climate-driven modifications to forest structure could substantially influence landslide hazards throughout the Front Range and similar water-limited environments where vegetation communities may be more susceptible to small variations in climate.

Cenozoic stratigraphy and structure of the Chesapeake Bay region

USGS Publications Warehouse

Powars, David S.; Edwards, Lucy E.; Kidwell, Susan M.; Schindler, J. Stephen

2015-01-01

The Salisbury embayment is a broad tectonic downwarp that is filled by generally seaward-thickening, wedge-shaped deposits of the central Atlantic Coastal Plain. Our two-day field trip will take us to the western side of this embayment from the Fall Zone in Washington, D.C., to some of the bluffs along Aquia Creek and the Potomac River in Virginia, and then to the Calvert Cliffs on the western shore of the Chesapeake Bay. We will see fluvial-deltaic Cretaceous deposits of the Potomac Formation. We will then focus on Cenozoic marine deposits. Transgressive and highstand deposits are stacked upon each other with unconformities separating them; rarely are regressive or lowstand deposits preserved. The Paleocene and Eocene shallow shelf deposits consist of glauconitic, silty sands that contain varying amounts of marine shells. The Miocene shallow shelf deposits consist of diatomaceous silts and silty and shelly sands. The lithology, thickness, dip, preservation, and distribution of the succession of coastal plain sediments that were deposited in our field-trip area are, to a great extent, structurally controlled. Surficial and subsurface mapping using numerous continuous cores, auger holes, water-well data, and seismic surveys has documented some folds and numerous high-angle reverse and normal faults that offset Cretaceous and Cenozoic deposits. Many of these structures are rooted in early Mesozoic and/or Paleozoic NE-trending regional tectonic fault systems that underlie the Atlantic Coastal Plain. On Day 1, we will focus on two fault systems (stops 1–2; Stafford fault system and the Skinkers Neck–Brandywine fault system and their constituent fault zones and faults). We will then see (stops 3–5) a few of the remaining exposures of largely unlithified marine Paleocene and Eocene strata along the Virginia side of the Potomac River including the Paleocene-Eocene Thermal Maximum boundary clay. These exposures are capped by fluvial-estuarine Pleistocene terrace deposits. On Day 2, we will see (stops 6–9) the classic Miocene section along the ~25 miles (~40 km) of Calvert Cliffs in Maryland, including a possible fault and structural warping. Cores from nearby test holes will also be shown to supplement outcrops.

Thermally stable, low resistance contact systems for use with shallow junction p(+) nn(+) and n(+)pp(+) InP solar cells

NASA Technical Reports Server (NTRS)

Weizer, V. G.; Fatemi, N. S.; Hoffman, R. W.

1995-01-01

Two contact systems for use on shallow junction InP solar cells are described. The feature shared by these two contact systems is the absence of the metallurgical intermixing that normally takes place between the semiconductor and the contact metallization during the sintering process. The n(+)pp(+) cell contact system, consisting of a combination of Au and Ge, not only exhibits very low resistance in the as-fabricated state, but also yields post-sinter resistivity values of 1(exp -7) ohms-sq cm, with effectively no metal-InP interdiffusion. The n(+)pp(+)cell contact system, consisting of a combination of Ag and Zn, permits low resistance ohmic contact to be made directly to a shallow junction p/n InP device without harming the device itself during the contacting process.

Estimation of tree root distribution using electrical resistivity tomography

NASA Astrophysics Data System (ADS)

Schmaltz, Elmar; Uhlemann, Sebastian

2016-04-01

Trees influence soil-mantled slopes mechanically by anchoring in the soil with coarse roots. Forest-stands play an important role in mechanical reinforcement to reduce the susceptibility to slope failures. However, the effect of stabilisation of roots is connected with the distribution of roots in the ground. The architecture and distribution of tree roots is diverse and strongly dependent on species, plant age, stand density, relief, nutrient supply as well as climatic and pedologic conditions. Particularly trees growing on inclined slopes show shape-shifting root systems. Geophysical techniques are commonly used to non-invasively study hydrological and geomorphological subsurface properties, by imaging contrasting physical properties of the ground. This also poses the challenge for geophysical imaging of root systems, as properties, such as electrical resistivity, of dry and wet roots fall within the range of soils. The objective of this study is whether electrical resistivity tomography (ERT) allows a reliable reproduction of root systems of alone-standing trees on diverse inclined slopes. In this regard, we set the focus on the branching of secondary roots of two common walnut trees (Juglans regia L.) that were not disturbed in the adjacencies and thus expected to develop their root systems unhindered. Walnuts show a taproot-cordate root system with a strong tap-root in juvenile age and a rising cordate rooting with increasing age. Hence, mature walnuts can exhibit a root system that appears to be deformed or shifted respectively when growing at hillslope locations. We employed 3D ERT centred on the tree stem, comprising dipole-dipole measurements on a 12-by-41 electrode grid with 0.5 m and 1.0m electrode spacing in x- and y-direction respectively. Data were inverted using a 3D smoothness constrained non-linear least-squares algorithm. First results show that the general root distribution can be estimated from the resistivity models and that shape-shifting effects of secondary roots of the two Juglans regia in differently inclined ambiences can be imaged using 3D ERT. The results of this study can yield a grasp about the dimension of root architecture of single trees by using non-invasive geophysical techniques and give evidence about how roots influence the soil mantle mechanically and hydrologically according to the spatial distribution of their coarse roots.

Water Deficit Enhances C Export to the Roots in Arabidopsis thaliana Plants with Contribution of Sucrose Transporters in Both Shoot and Roots1[OPEN

PubMed Central

Durand, Mickaël; Porcheron, Benoît; Maurousset, Laurence; Lemoine, Rémi; Pourtau, Nathalie

2016-01-01

Root high plasticity is an adaptation to its changing environment. Water deficit impairs growth, leading to sugar accumulation in leaves, part of which could be available to roots via sucrose (Suc) phloem transport. Phloem loading is widely described in Arabidopsis (Arabidopsis thaliana), while unloading in roots is less understood. To gain information on leaf-to-root transport, a soil-based culture system was developed to monitor root system architecture in two dimensions. Under water deficit (50% of soil water-holding capacity), total root length was strongly reduced but the depth of root foraging and the shape of the root system were less affected, likely to improve water uptake. 14CO2 pulse-chase experiments confirmed that water deficit enhanced carbon (C) export to the roots, as suggested by the increased root-to-shoot ratio. The transcript levels of AtSWEET11 (for sugar will eventually be exported transporter), AtSWEET12, and AtSUC2 (for Suc carrier) genes, all three involved in Suc phloem loading, were significantly up-regulated in leaves of water deficit plants, in accordance with the increase in C export from the leaves to the roots. Interestingly, the transcript levels of AtSUC2 and AtSWEET11 to AtSWEET15 were also significantly higher in stressed roots, underlying the importance of Suc apoplastic unloading in Arabidopsis roots and a putative role for these Suc transporters in Suc unloading. These data demonstrate that, during water deficit, plants respond to growth limitation by allocating relatively more C to the roots to maintain an efficient root system and that a subset of Suc transporters is potentially involved in the flux of C to and in the roots. PMID:26802041

Influence of arbuscular mycorrhizae on the root system of maize plants under salt stress.

PubMed

Sheng, Min; Tang, Ming; Chen, Hui; Yang, Baowei; Zhang, Fengfeng; Huang, Yanhui

2009-07-01

Salt stress has become a severe global problem, and salinity is one of the most important abiotic factors limiting plant growth and yield. It is known that arbuscular mycorrhizal (AM) fungi decrease plant yield losses under salinity. With the aim of determining whether AM inoculation would give an advantage to root development under salt stress, a greenhouse experiment was carried out with AM or without AM fungi. Maize plants were grown in a sand and soil mixture with 5 NaCl levels (0, 0.5, 1.0, 1.5, and 2.0 g/kg dry substrate) for 55 days, following 15 days of nonsaline pretreatment. At all salt levels, mycorrhizal plants had higher dry shoot and root mass, higher root activity, and lower root to shoot ratios than non-mycorrhizal plants. In salt-free soil, root length, root surface area, root volume, and number of root tips and forks were significantly larger in mycorrhizal plants than in non-mycorrhizal plants, whereas, under salt stress, average root diameter and root volume of mycorrhizal plants were larger than those of non-mycorrhizal plants. Regardless of the NaCl level, mycorrhizal plants had lower specific root length, lower percentage of root length in the 0-0.2 mm diameter class, and higher percentage of root length in both the 0.2-0.4 mm and 0.4-0.6 mm diameter classes, which suggests that the root system shows a significant shift towards a thicker root system when maize plants were inoculated with Glomus mosseae (Nicolson & Gerdemann). The results presented here indicate that the improvements in root activity and the coarse root system of mycorrhizal maize may help in alleviating salt stress on the plant.

Fate of methane in aquatic systems dominated by free-floating plants.

PubMed

Kosten, Sarian; Piñeiro, Marcia; de Goede, Eefje; de Klein, Jeroen; Lamers, Leon P M; Ettwig, Katharina

2016-11-01

Worldwide the area of free-floating plants is increasing, which can be expected to alter methane (CH 4 ) emissions from aquatic systems in several ways. A large proportion of the CH 4 produced may become oxidized below the plants due to the accumulation of CH 4 as a result of a decrease in the diffusive water-atmosphere flux and the entrapment of part of the ebullitive CH 4 , in combination with suitable conditions for methane oxidizing (MOX) bacteria in the aerobic rhizosphere. We used a set of essays to test this hypothesis and to explore the effect of different densities for three widespread free-floating species: Azolla filiculoides, Salvinia natans, and Eichhornia crassipes. The gas exchange velocity, proportion of CH 4 bubbles trapped by the plants, occurrence of radial oxygen loss from roots, and MOX rates on the roots were assessed. We subsequently used the outcome of these experiments to parameterize a simple model. With this model we estimated the proportion of the produced CH 4 that is oxidized, for different plant species and different densities. We found that in a shallow (1 m) system up to 70% of the CH 4 produced may become oxidized as a result of a strong decrease in gas exchange combined with high MOX activity of the rhizosphere microbiome. As floating plants also are likely to increase CH 4 production by organic matter production, especially when their presence induces anaerobic conditions, the overall effect on CH 4 emission will strongly depend on local conditions. This explains the contrasting effects of floating plants on CH 4 emissions in literature as reviewed here. As the effect of floating plants on CH 4 emissions, including the high MOX rates we show here, can be substantial, there is an urgent need to consider this impact when assessing greenhouse gas budgets. Copyright © 2016 Elsevier Ltd. All rights reserved.

Cavity size and copper root pruning affect production and establishment of container-grown longleaf pine seedlings

Treesearch

Marry Anne Sword Sayer; James D. Haywood; Shi-Jean Susana Sung

2009-01-01

With six container types, we tested the effects of cavity size (i.e., 60, 93, and 170 ml) and copper root pruning on the root system development of longleaf pine (Pinus palustris Mill.) seedlings grown in a greenhouse. We then evaluated root egress during a root growth potential test and assessed seedling morphology and root system development 1 year after planting in...

Plant roots: understanding structure and function in an ocean of complexity

PubMed Central

Ryan, Peter R.; Delhaize, Emmanuel; Watt, Michelle; Richardson, Alan E.

2016-01-01

Background The structure and function of plant roots and their interactions with soil are exciting scientific frontiers that will ultimately reveal much about our natural systems, global water and mineral and carbon cycles, and help secure food supplies into the future. This Special Issue presents a collection of papers that address topics at the forefront of our understanding of root biology. Scope These papers investigate how roots cope with drought, nutrient deficiencies, toxicities and soil compaction as well as the interactions that roots have with soil microorganisms. Roots of model plant species, annual crops and perennial species are studied in short-term experiments through to multi-year trials. Spatial scales range from the gene up to farming systems and nutrient cycling. The diverse, integrated approaches described by these studies encompass root genetics as applied to soil management, as well as documenting the signalling processes occurring between roots and shoots and between roots and soil. Conclusions This Special Issue on roots presents invited reviews and research papers covering a span of topics ranging from fundamental aspects of anatomy, growth and water uptake to roots in crop and pasture systems. Understanding root structure and function and adaptation to the abiotic and biotic stresses encountered in field conditions is important for sustainable agricultural production and better management of natural systems.

Shallow system rejuvenation and magma discharge trends at Piton de la Fournaise volcano (La Réunion Island)

NASA Astrophysics Data System (ADS)

Coppola, Diego; Di Muro, Andrea; Peltier, Aline; Villeneuve, Nicolas; Ferrazzini, Valerie; Favalli, Massimiliano; Bachèlery, Patrick; Gurioli, Lucia; Harris, Andrew; Moune, Séverine; Vlastélic, Ivan; Galle, Bo; Arellano, Santiago; Aiuppa, Alessandro

2017-04-01

During April 2007, the largest historical eruption of Piton de la Fournaise (Île de La Réunion, France) drained the shallow plumbing system and resulted in collapse of the summit crater. Following the 2007 eruption, Piton de la Fournaise entered a seven-year long period of near-continuous deflation interrupted, in June 2014, by a new phase of significant inflation. By integrating multiple datasets (lava discharge rates, deformation, seismicity, gas flux, gas composition, and lava chemistry), we here show that the progressive migration of magma from a deeper (below sea level) storage zone gradually rejuvenated and pressurized the above-sea-level portion of the magmatic system to provoke four small (<5 × 10 6 m3) eruptions from vents located close to the summit cone. Progressive increase in output rate between each eruption culminated, with the fifth, longest-lasting (August-October 2015) and largest-volume (45 ± 15 × 10 6 m3) eruption of the cycle. Activity observed in 2014 and 2015 points to a phase of shallow system rejuvenation and discharge, whereby continuous magma supply provoked eruptions from increasingly deeper and larger magma storage zones. Downward depressurization continued until unloading of the deepest, least differentiated magma triggered an "effusive paroxysm" that emptied the main shallow reservoir and terminated the cycle. Such an unloading process may characterize the evolution of shallow magmatic systems at other persistently active effusive centers.

Root-Contact/Pressure-Plate Assembly For Hydroponic System

NASA Technical Reports Server (NTRS)

Morris, Carlton E.; Loretan, Philip A.; Bonsi, Conrad K.; Hill, Walter A.

1994-01-01

Hydroponic system includes growth channels equipped with rootcontact/pressure-plate assemblies. Pump and associated plumbing circulate nutrient liquid from reservoir, along bottom of growth channels, and back to reservoir. Root-contact/pressure-plate assembly in each growth channel stimulates growth of roots by applying mild contact pressure. Flat plate and plate connectors, together constitute pressure plate, free to move upward to accommodate growth of roots. System used for growing sweetpotatoes and possibly other tuber and root crops.

Application of near real-time radial semblance to locate the shallow magmatic conduit at Kilauea Volcano, Hawaii

USGS Publications Warehouse

Dawson, P.; Whilldin, D.; Chouet, B.

2004-01-01

Radial Semblance is applied to broadband seismic network data to provide source locations of Very-Long-Period (VLP) seismic energy in near real time. With an efficient algorithm and adequate network coverage, accurate source locations of VLP energy are derived to quickly locate the shallow magmatic conduit system at Kilauea Volcano, Hawaii. During a restart in magma flow following a brief pause in the current eruption, the shallow magmatic conduit is pressurized, resulting in elastic radiation from various parts of the conduit system. A steeply dipping distribution of VLP hypocenters outlines a region extending from sea level to about 550 m elevation below and just east of the Halemaumau Pit Crater. The distinct hypocenters suggest the shallow plumbing system beneath Halemaumau consists of a complex plexus of sills and dikes. An unconstrained location for a section of the conduit is also observed beneath the region between Kilauea Caldera and Kilauea Iki Crater.

Toward the Application of the Implicit Particle Filter to Real Data in a Shallow Water Model of the Nearshore Ocean

NASA Astrophysics Data System (ADS)

Miller, R.

2015-12-01

Following the success of the implicit particle filter in twin experiments with a shallow water model of the nearshore environment, the planned next step is application to the intensive Sandy Duck data set, gathered at Duck, NC. Adaptation of the present system to the Sandy Duck data set will require construction and evaluation of error models for both the model and the data, as well as significant modification of the system to allow for the properties of the data set. Successful implementation of the particle filter promises to shed light on the details of the capabilities and limitations of shallow water models of the nearshore ocean relative to more detailed models. Since the shallow water model admits distinct dynamical regimes, reliable parameter estimation will be important. Previous work by other groups give cause for optimism. In this talk I will describe my progress toward implementation of the new system, including problems solved, pitfalls remaining and preliminary results

Monsoon dependent ecosystems: Implications of the vertical distribution of soil moisture on land surface-atmosphere interactions

NASA Astrophysics Data System (ADS)

Sanchez-Mejia, Zulia M.

Uncertainty of predicted change in precipitation frequency and intensity motivates the scientific community to better understand, quantify, and model the possible outcome of dryland ecosystems. In pulse dependent ecosystems (i.e. monsoon driven) soil moisture is tightly linked to atmospheric processes. Here, I analyze three overarching questions; Q1) How does soil moisture presence or absence in a shallow or deep layer influence the surface energy budget and planetary boundary layer characteristics?, Q2) What is the role of vegetation on ecosystem albedo in the presence or absence of deep soil moisture?, Q3) Can we develop empirical relationships between soil moisture and the planetary boundary layer height to help evaluate the role of future precipitation changes in land surface atmosphere interactions? . To address these questions I use a conceptual framework based on the presence or absence of soil moisture in a shallow or deep layer. I define these layers by using root profiles and establish soil moisture thresholds for each layer using four years of observations from the Santa Rita Creosote Ameriflux site. Soil moisture drydown curves were used to establish the shallow layer threshold in the shallow layer, while NEE (Net Ecosystem Exchange of carbon dioxide) was used to define the deep soil moisture threshold. Four cases were generated using these thresholds: Case 1, dry shallow layer and dry deep layer; Case 2, wet shallow layer and dry deep layer; Case 3, wet shallow layer and wet deep layer, and Case 4 dry shallow and wet deep layer. Using this framework, I related data from the Ameriflux site SRC (Santa Rita Creosote) from 2008 to 2012 and from atmospheric soundings from the nearby Tucson Airport; conducted field campaigns during 2011 and 2012 to measure albedo from individual bare and canopy patches that were then evaluated in a grid to estimate the influence of deep moisture on albedo via vegetation cover change; and evaluated the potential of using a two-layer bucket model and empirical relationships to evaluate the link between deep soil moisture and the planetary boundary layer height under changing precipitation regime. My results indicate that (1) the presence or absence of water in two layers plays a role in surface energy dynamics, (2) soil moisture presence in the deep layer is linked with decreased ecosystem albedo and planetary boundary layer height, (3) deep moisture sustains vegetation greenness and decreases albedo, and (4) empirical relationships are useful in modeling planetary boundary layer height from dryland ecosystems. Based on these results we argue that deep soil moisture plays an important role in land surface-atmosphere interactions.

Nitrate in groundwater and water sources used by riparian trees in an agricultural watershed: A chemical and isotopic investigation in southern Minnesota

USGS Publications Warehouse

Komor, Stephen C.; Magner, Joseph A.

1996-01-01

This study evaluates processes that affect nitrate concentrations in groundwater beneath riparian zones in an agricultural watershed. Nitrate pathways in the upper 2 m of groundwater were investigated beneath wooded and grass-shrub riparian zones next to cultivated fields. Because trees can be important components of the overall nitrate pathway in wooded riparian zones, water sources used by riparian trees and possible effects of trees on nitrate concentrations in groundwater were also investigated. Average nitrate concentrations in shallow groundwater beneath the cultivated fields were 5.5 mg/L upgradient of the wooded riparian zone and 3.5 mg/L upgradient of the grass-shrub zone. Shallow groundwater beneath the fields passed through the riparian zones and discharged into streams that had average nitrate concentrations of 8.5 mg/L (as N). Lateral variations of δD values in groundwater showed that mixing among different water sources occurred beneath the riparian zones. In the wooded riparian zone, nitrate concentrations in shallow groundwater were diluted by upwelling, nitrate-poor, deep groundwater. Upwelling deep groundwater contained ammonium with a δ15N of 5‰ that upon nitrification and mixing with nitrate in shallow groundwater caused nitrate δ15N values in shallow groundwater to decrease by as much as 19.5‰. Stream water penetrated laterally beneath the wooded riparian zone as far as 19 m from the stream's edge and beneath the grass-shrub zone as far as 27 m from the stream's edge. Nitrate concentrations in shallow groundwater immediately upgradient of where it mixed with stream water averaged 0.4 mg/L in the wooded riparian zone and 0.8 mg/L near the grass-shrub riparian zone. Nitrate concentrations increased toward the streams because of mixing with nitrate-rich stream water. Because nitrate concentrations were larger in stream water than shallow groundwater, concentrated nitrate in the streams cannot have come from shallow groundwater at these sites. Water sources of riparian trees were identified by comparing δD values of sap water, soil water, groundwater, and stream water. Soil water was the main water source for trees in the outer 4 to 6 m of one part of the wooded riparian zone and outer 10 m of another part. Groundwater was a significant water source for trees closer to the streams where the water table was less than about 2.1 to 2.7 m below the surface. No evidence was found in the nitrate concentration profiles that trees close to the streams that took up groundwater through their roots also took up nitrate from groundwater. The lack of such evidence is attributed to the nitrate concentration profiles being insufficiently sensitive indicators of nitrate removal by trees.

Formation Conditions and Sedimentary Characteristics of a Triassic Shallow Water Braided Delta in the Yanchang Formation, Southwest Ordos Basin, China.

PubMed

Liu, Ziliang; Shen, Fang; Zhu, Xiaomin; Li, Fengjie; Tan, Mengqi

2015-01-01

A large, shallow braided river delta sedimentary system developed in the Yanchang Formation during the Triassic in the southwest of the Ordos basin. In this braided delta system, abundant oil and gas resources have been observed, and the area is a hotspot for oil and gas resource exploration. Through extensive field work on outcrops and cores and analyses of geophysical data, it was determined that developments in the Late Triassic produced favorable geological conditions for the development of shallow water braided river deltas. Such conditions included a large basin, flat terrain, and wide and shallow water areas; wet and dry cyclical climate changes; ancient water turbulence; dramatic depth cycle changes; ancient uplift development; strong weathering of parent rock; and abundant supply. The shallow water braided river delta showed grain sediment granularity, plastic debris, and sediment with mature composition and structure that reflected the strong hydrodynamic environment of large tabular cross-bedding, wedge cross-bedding, and multiple positive rhythms superimposed to form a thick sand body layer. The branch river bifurcation developed underwater, and the thickness of the sand body increased further, indicating that the slope was slow and located in shallow water. The seismic responses of the braided river delta reflected strong shallow water performance, indicated by a progradation seismic reflection phase axis that was relatively flat; in addition, the seismic reflection amplitude was strong and continuous with a low angle and extended over considerable distances (up to 50 km). The sedimentary center was close to the provenance, the width of the river was large, and a shallow sedimentary structure and a sedimentary rhythm were developed. The development of the delta was primarily controlled by tectonic activity and changes in the lake level; as a result, the river delta sedimentary system eventually presented a "small plain, big front" character.

Formation Conditions and Sedimentary Characteristics of a Triassic Shallow Water Braided Delta in the Yanchang Formation, Southwest Ordos Basin, China

PubMed Central

Liu, Ziliang; Shen, Fang; Zhu, Xiaomin; Li, Fengjie; Tan, Mengqi

2015-01-01

A large, shallow braided river delta sedimentary system developed in the Yanchang Formation during the Triassic in the southwest of the Ordos basin. In this braided delta system, abundant oil and gas resources have been observed, and the area is a hotspot for oil and gas resource exploration. Through extensive field work on outcrops and cores and analyses of geophysical data, it was determined that developments in the Late Triassic produced favorable geological conditions for the development of shallow water braided river deltas. Such conditions included a large basin, flat terrain, and wide and shallow water areas; wet and dry cyclical climate changes; ancient water turbulence; dramatic depth cycle changes; ancient uplift development; strong weathering of parent rock; and abundant supply. The shallow water braided river delta showed grain sediment granularity, plastic debris, and sediment with mature composition and structure that reflected the strong hydrodynamic environment of large tabular cross-bedding, wedge cross-bedding, and multiple positive rhythms superimposed to form a thick sand body layer. The branch river bifurcation developed underwater, and the thickness of the sand body increased further, indicating that the slope was slow and located in shallow water. The seismic responses of the braided river delta reflected strong shallow water performance, indicated by a progradation seismic reflection phase axis that was relatively flat; in addition, the seismic reflection amplitude was strong and continuous with a low angle and extended over considerable distances (up to 50 km). The sedimentary center was close to the provenance, the width of the river was large, and a shallow sedimentary structure and a sedimentary rhythm were developed. The development of the delta was primarily controlled by tectonic activity and changes in the lake level; as a result, the river delta sedimentary system eventually presented a “small plain, big front” character. PMID:26075611

Jatropha curcas L. Root Structure and Growth in Diverse Soils

PubMed Central

Valdés-Rodríguez, Ofelia Andrea; Sánchez-Sánchez, Odilón; Pérez-Vázquez, Arturo; Caplan, Joshua S.; Danjon, Frédéric

2013-01-01

Unlike most biofuel species, Jatropha curcas has promise for use in marginal lands, but it may serve an additional role by stabilizing soils. We evaluated the growth and structural responsiveness of young J. curcas plants to diverse soil conditions. Soils included a sand, a sandy-loam, and a clay-loam from eastern Mexico. Growth and structural parameters were analyzed for shoots and roots, although the focus was the plasticity of the primary root system architecture (the taproot and four lateral roots). The sandy soil reduced the growth of both shoot and root systems significantly more than sandy-loam or clay-loam soils; there was particularly high plasticity in root and shoot thickness, as well as shoot length. However, the architecture of the primary root system did not vary with soil type; the departure of the primary root system from an index of perfect symmetry was 14 ± 5% (mean ± standard deviation). Although J. curcas developed more extensively in the sandy-loam and clay-loam soils than in sandy soil, it maintained a consistent root to shoot ratio and root system architecture across all types of soil. This strong genetic determination would make the species useful for soil stabilization purposes, even while being cultivated primarily for seed oil. PMID:23844412

Jatropha curcas L. root structure and growth in diverse soils.

PubMed

Valdés-Rodríguez, Ofelia Andrea; Sánchez-Sánchez, Odilón; Pérez-Vázquez, Arturo; Caplan, Joshua S; Danjon, Frédéric

2013-01-01

Unlike most biofuel species, Jatropha curcas has promise for use in marginal lands, but it may serve an additional role by stabilizing soils. We evaluated the growth and structural responsiveness of young J. curcas plants to diverse soil conditions. Soils included a sand, a sandy-loam, and a clay-loam from eastern Mexico. Growth and structural parameters were analyzed for shoots and roots, although the focus was the plasticity of the primary root system architecture (the taproot and four lateral roots). The sandy soil reduced the growth of both shoot and root systems significantly more than sandy-loam or clay-loam soils; there was particularly high plasticity in root and shoot thickness, as well as shoot length. However, the architecture of the primary root system did not vary with soil type; the departure of the primary root system from an index of perfect symmetry was 14 ± 5% (mean ± standard deviation). Although J. curcas developed more extensively in the sandy-loam and clay-loam soils than in sandy soil, it maintained a consistent root to shoot ratio and root system architecture across all types of soil. This strong genetic determination would make the species useful for soil stabilization purposes, even while being cultivated primarily for seed oil.

Quality aspects of ex vivo root canal treatments done by undergraduate dental students using four different endodontic treatment systems.

PubMed

Jungnickel, Luise; Kruse, Casper; Vaeth, Michael; Kirkevang, Lise-Lotte

2018-04-01

To evaluate factors associated with treatment quality of ex vivo root canal treatments performed by undergraduate dental students using different endodontic treatment systems. Four students performed root canal treatment on 80 extracted human teeth using four endodontic treatment systems in designated treatment order following a Latin square design. Lateral seal and length of root canal fillings was radiographically assessed; for lateral seal, a graded visual scale was used. Treatment time was measured separately for access preparation, biomechanical root canal preparation, obturation and for the total procedure. Mishaps were registered. An ANOVA mirroring the Latin square design was performed. Use of machine-driven nickel-titanium systems resulted in overall better quality scores for lateral seal than use of the manual stainless-steel system. Among systems with machine-driven files, scores did not significantly differ. Use of machine-driven instruments resulted in shorter treatment time than manual instrumentation. Machine-driven systems with few files achieved shorter treatment times. With increasing number of treatments, root canal-filling quality increased, treatment time decreased; a learning curve was plotted. No root canal shaping file separated. The use of endodontic treatment systems with machine-driven files led to higher quality lateral seal compared to the manual system. The three contemporary machine-driven systems delivered comparable results regarding quality of root canal fillings; they were safe to use and provided a more efficient workflow than the manual technique. Increasing experience had a positive impact on the quality of root canal fillings while treatment time decreased.

Cytokinin-induced promotion of root meristem size in the fern Azolla supports a shoot-like origin of euphyllophyte roots.

PubMed

de Vries, Jan; Fischer, Angela Melanie; Roettger, Mayo; Rommel, Sophie; Schluepmann, Henriette; Bräutigam, Andrea; Carlsbecker, Annelie; Gould, Sven Bernhard

2016-01-01

The phytohormones cytokinin and auxin orchestrate the root meristem development in angiosperms by determining embryonic bipolarity. Ferns, having the most basal euphyllophyte root, form neither bipolar embryos nor permanent embryonic primary roots but rather an adventitious root system. This raises the questions of how auxin and cytokinin govern fern root system architecture and whether this can tell us something about the origin of that root. Using Azolla filiculoides, we characterized the influence of IAA and zeatin on adventitious fern root meristems and vasculature by Nomarski microscopy. Simultaneously, RNAseq analyses, yielding 36,091 contigs, were used to uncover how the phytohormones affect root tip gene expression. We show that auxin restricts Azolla root meristem development, while cytokinin promotes it; it is the opposite effect of what is observed in Arabidopsis. Global gene expression profiling uncovered 145 genes significantly regulated by cytokinin or auxin, including cell wall modulators, cell division regulators and lateral root formation coordinators. Our data illuminate both evolution and development of fern roots. Promotion of meristem size through cytokinin supports the idea that root meristems of euphyllophytes evolved from shoot meristems. The foundation of these roots was laid in a postembryonically branching shoot system. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Strategies towards an optimized use of the shallow geothermal potential

NASA Astrophysics Data System (ADS)

Schelenz, S.; Firmbach, L.; Kalbacher, T.; Goerke, U.; Kolditz, O.; Dietrich, P.; Vienken, T.

2013-12-01

Thermal use of the shallow subsurface for heat generation, cooling and thermal energy storage is increasingly gaining importance in reconsideration of future energy supplies, e.g. in the course of German energy transition, with application shifting from isolated to intensive use. The planning and dimensioning of (geo-)thermal applications is strongly influenced by the availability of exploration data. Hence, reliable site-specific dimensioning of systems for the thermal use of the shallow subsurface will contribute to an increase in resource efficiency, cost reduction during installation and operation, as well as reduction of environmental impacts and prevention of resource over-exploitation. Despite large cumulative investments that are being made for the utilization of the shallow thermal potential, thermal energy is in many cases exploited without prior on-site exploration and investigation of the local geothermal potential, due to the lack of adequate and cost-efficient exploration techniques. We will present new strategies for an optimized utilization of urban thermal potential, showcased at a currently developed residential neighborhood with high demand for shallow geothermal applications, based on a) enhanced site characterization and b) simulation of different site specific application scenarios. For enhanced site characterization, surface geophysics and vertical high resolution direct push-profiling were combined for reliable determination of aquifer structure and aquifer parameterization. Based on the site characterization, different site specific geothermal application scenarios, including different system types and system configurations, were simulated using OpenGeoSys to guarantee an environmental and economic sustainable thermal use of the shallow subsurface.

Chaparral Shrub Hydraulic Traits, Size, and Life History Types Relate to Species Mortality during California’s Historic Drought of 2014

PubMed Central

MacKinnon, Evan D.; Dario, Hannah L.; Jacobsen, Anna L.; Pratt, R. Brandon; Davis, Stephen D.

2016-01-01

Chaparral is the most abundant vegetation type in California and current climate change models predict more frequent and severe droughts that could impact plant community structure. Understanding the factors related to species-specific drought mortality is essential to predict such changes. We predicted that life history type, hydraulic traits, and plant size would be related to the ability of species to survive drought. We evaluated the impact of these factors in a mature chaparral stand during the drought of 2014, which has been reported as the most severe in California in the last 1,200 years. We measured tissue water potential, native xylem specific conductivity, leaf specific conductivity, percentage loss in conductivity, and chlorophyll fluorescence for 11 species in February 2014, which was exceptionally dry following protracted drought. Mortality among the 11 dominant species ranged from 0 to 93%. Total stand density was reduced 63.4% and relative dominance of species shifted after the drought. Mortality was negatively correlated with water potential, native xylem specific conductivity, and chlorophyll fluorescence, but not with percent loss in hydraulic conductivity and leaf specific conductivity. The model that best explained mortality included species and plant size as main factors and indicated that larger plants had greater survival for 2 of the species. In general, species with greater resistance to water-stress induced cavitation showed greater mortality levels. Despite adult resprouters typically being more vulnerable to cavitation, results suggest that their more extensive root systems enable them to better access soil moisture and avoid harmful levels of dehydration. These results are consistent with the hypothesis that short-term high intensity droughts have the strongest effect on mature plants of shallow-rooted dehydration tolerant species, whereas deep-rooted dehydration avoiding species fare better in the short-term. Severe droughts can drive changes in chaparral structure as a result of the differential mortality among species. PMID:27391489

Summer dormancy, drought survival and functional resource acquisition strategies in California perennial grasses.

PubMed

Balachowski, Jennifer A; Bristiel, Pauline M; Volaire, Florence A

2016-08-01

Evidence suggests drought severity is increasing due to climate change, but strategies promoting severe drought survival in perennial grasses have been seldom explored. This is particularly true of summer dormancy, an adaptation common in summer-dry Mediterranean-type climates. In addition, though theory predicts superior drought survival results in lower potential productivity, studies rarely measure both drought survival and growth under optimal conditions. Physiological and functional ecological approaches were integrated to quantify interspecific variation in foliar and root traits in a suite of eight California perennial grass species. In a glasshouse experiment, summer dormancy, foliar functional trait variation, and seasonal growth and phenology under non-limiting water conditions and dehydration tolerance under progressive drought were quantified. In a second glasshouse study, root functional traits were quantified under non-limiting water conditions in rhizotrons. Summer dormancy was associated with higher dehydration tolerance, and negatively associated with traits conferring dehydration avoidance. Species with greater summer dormancy were characterized by greater springtime productivity, earlier reproduction, and a shallow and fine root system, which are indicative of dehydration escape. Summer dormancy was associated with an acquisitive, competitive functional strategy in spring, and a conservative strategy in summer. Both the escape and acquisitive springtime strategies observed in summer dormant perennial taxa are typically associated with annual grasses. California grasslands were once dominated by perennial species, but have been overtaken by non-native Mediterranean annual grasses, which are expected to be further favoured by climate change. Owing to functional similarity with these exotic annuals, it is suggested that native summer dormant taxa may play an important ecological role in the future of both natural and restored California grasslands. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Soil-plant interaction monitoring: Small scale example of an apple orchard in Trentino, North-Eastern Italy.

PubMed

Cassiani, Giorgio; Boaga, Jacopo; Rossi, Matteo; Putti, Mario; Fadda, Giuseppe; Majone, Bruno; Bellin, Alberto

2016-02-01

Accurate monitoring and modeling of soil-plant systems are a key unresolved issue that currently limits the development of a comprehensive view of the interactions between soil and atmosphere, with a number of practical consequences including the difficulties in predicting climatic change patterns. This paper presents a case study where time-lapse minimal-invasive 3D micro-electrical tomography (ERT) is used to monitor rhizosphere eco-hydrological processes in an apple orchard in the Trentino region, Northern Italy. In particular we aimed at gaining a better understanding of the soil-vegetation water exchanges in the shallow critical zone, as part of a coordinated effort towards predicting climate-induced changes on the hydrology of Mediterranean basins (EU FP7 CLIMB project). The adopted strategy relied upon the installation of a 3D electrical tomography apparatus consisting of four mini-boreholes carrying 12 electrodes each plus 24 mini-electrodes on the ground surface, arranged in order to image roughly a cubic meter of soil surrounding a single apple tree. The monitoring program was initially tested with repeated measurements over about one year. Subsequently, we performed three controlled irrigation tests under different conditions, in order to evaluate the water redistribution under variable root activities and climatic conditions. Laboratory calibration on soil samples allowed us to translate electrical resistivity variations into moisture content changes, supported also by in-situ TDR measurements. Richards equation modeling was used also to explain the monitoring evidence. The results clearly identified the effect of root water uptake and the corresponding subsoil region where active roots are present, but also marked the need to consider the effects of different water salinity in the water infiltration process. We also gained significant insight about the need to measure quantitatively the plant evapotranspiration in order to close the water balance and separate soil structure effects (primarily, hydraulic conductivity) from water dynamics induced by living plants. Copyright © 2015 Elsevier B.V. All rights reserved.

Groundwater controls on vegetation composition and patterning in mountain meadows

NASA Astrophysics Data System (ADS)

Lowry, Christopher S.; Loheide, Steven P., II; Moore, Courtney E.; Lundquist, Jessica D.

2011-10-01

Mountain meadows are groundwater-dependent ecosystems that are hot spots of biodiversity and productivity. In the Sierra Nevada mountains of California, these ecosystems rely on shallow groundwater to support their vegetation communities during the dry summer growing season in the region's Mediterranean montane climate. Vegetation composition in this environment is influenced by both (1) oxygen stress that occurs when portions of the root zone are saturated and anaerobic conditions limit root respiration and (2) water stress that occurs when the water table drops and the root zone becomes water limited. A spatially distributed watershed model that explicitly accounts for snowmelt processes was linked to a fine-resolution groundwater flow model of Tuolumne Meadows in Yosemite National Park, California, to simulate water table dynamics. This linked hydrologic model was calibrated to observations from a well observation network for 2006-2009. A vegetation survey was also conducted at the site in which the three dominant species were identified at more than 200 plots distributed across the meadow. Nonparametric multiplicative regression was performed to create and select the best models for predicting vegetation dominance on the basis of the simulated hydrologic regime. The hydrologic niches of three vegetation types representing wet, moist, and dry meadow vegetation communities were found to be best described using both (1) a sum exceedance value calculated as the integral of water table position above a depth threshold of oxygen stress and (2) a sum exceedance value calculated as the integral of water table position below a depth threshold of water stress. This linked hydrologic and vegetative modeling framework advances our ability to predict the propagation of human-induced climatic and land use or land cover changes through the hydrologic system to the ecosystem. The hydroecologic functioning of meadows provides an example of the extent to which cascading hydrologic processes at watershed, hillslope, and riparian zones and within channels are reflected in the composition and distribution of riparian vegetation.

Chaparral Shrub Hydraulic Traits, Size, and Life History Types Relate to Species Mortality during California's Historic Drought of 2014.

PubMed

Venturas, Martin D; MacKinnon, Evan D; Dario, Hannah L; Jacobsen, Anna L; Pratt, R Brandon; Davis, Stephen D

2016-01-01

Chaparral is the most abundant vegetation type in California and current climate change models predict more frequent and severe droughts that could impact plant community structure. Understanding the factors related to species-specific drought mortality is essential to predict such changes. We predicted that life history type, hydraulic traits, and plant size would be related to the ability of species to survive drought. We evaluated the impact of these factors in a mature chaparral stand during the drought of 2014, which has been reported as the most severe in California in the last 1,200 years. We measured tissue water potential, native xylem specific conductivity, leaf specific conductivity, percentage loss in conductivity, and chlorophyll fluorescence for 11 species in February 2014, which was exceptionally dry following protracted drought. Mortality among the 11 dominant species ranged from 0 to 93%. Total stand density was reduced 63.4% and relative dominance of species shifted after the drought. Mortality was negatively correlated with water potential, native xylem specific conductivity, and chlorophyll fluorescence, but not with percent loss in hydraulic conductivity and leaf specific conductivity. The model that best explained mortality included species and plant size as main factors and indicated that larger plants had greater survival for 2 of the species. In general, species with greater resistance to water-stress induced cavitation showed greater mortality levels. Despite adult resprouters typically being more vulnerable to cavitation, results suggest that their more extensive root systems enable them to better access soil moisture and avoid harmful levels of dehydration. These results are consistent with the hypothesis that short-term high intensity droughts have the strongest effect on mature plants of shallow-rooted dehydration tolerant species, whereas deep-rooted dehydration avoiding species fare better in the short-term. Severe droughts can drive changes in chaparral structure as a result of the differential mortality among species.

The SACLANTCEN Shallow-Water Transmission-Loss Data-Filing System.

DTIC Science & Technology

1980-10-01

HASTRUP , T AKAL, A PARISOTTO JNCLASSIFIED SACLANTCEN-SM-141 NL SEMEN SACLANTCEN Memorandum U RESEARCH CENTRE- MEMORANDUM THE SACLANTCEN SHALLOW-WATER...TRAN SMISSION-LOSS DATA-FILING SYSTEM by OLE F. HASTRUP , TUNCAY AKAL, ARTURO PARISOTTO I OCTOBER 1980 . ATLANTIC TREATY LA SPEZIA, ITALY ORGANIZATION...WATER TRANSMISSION-LOSS DATA-FILING SYSTEM, Ol1e F./ Hastrup Y/Akal Arturo/Parisotto/ This memorandum has been prepared within the SACLANTCEN

Assessment of a vertical high-resolution distributed-temperature-sensing system in a shallow thermohaline environment

NASA Astrophysics Data System (ADS)

Suárez, F.; Aravena, J. E.; Hausner, M. B.; Childress, A. E.; Tyler, S. W.

2011-03-01

In shallow thermohaline-driven lakes it is important to measure temperature on fine spatial and temporal scales to detect stratification or different hydrodynamic regimes. Raman spectra distributed temperature sensing (DTS) is an approach available to provide high spatial and temporal temperature resolution. A vertical high-resolution DTS system was constructed to overcome the problems of typical methods used in the past, i.e., without disturbing the water column, and with resistance to corrosive environments. This paper describes a method to quantitatively assess accuracy, precision and other limitations of DTS systems to fully utilize the capacity of this technology, with a focus on vertical high-resolution to measure temperatures in shallow thermohaline environments. It also presents a new method to manually calibrate temperatures along the optical fiber achieving significant improved resolution. The vertical high-resolution DTS system is used to monitor the thermal behavior of a salt-gradient solar pond, which is an engineered shallow thermohaline system that allows collection and storage of solar energy for a long period of time. The vertical high-resolution DTS system monitors the temperature profile each 1.1 cm vertically and in time averages as small as 10 s. Temperature resolution as low as 0.035 °C is obtained when the data are collected at 5-min intervals.

Maximizing root/rhizosphere efficiency to improve crop productivity and nutrient use efficiency in intensive agriculture of China.

PubMed

Shen, Jianbo; Li, Chunjian; Mi, Guohua; Li, Long; Yuan, Lixing; Jiang, Rongfeng; Zhang, Fusuo

2013-03-01

Root and rhizosphere research has been conducted for many decades, but the underlying strategy of root/rhizosphere processes and management in intensive cropping systems remain largely to be determined. Improved grain production to meet the food demand of an increasing population has been highly dependent on chemical fertilizer input based on the traditionally assumed notion of 'high input, high output', which results in overuse of fertilizers but ignores the biological potential of roots or rhizosphere for efficient mobilization and acquisition of soil nutrients. Root exploration in soil nutrient resources and root-induced rhizosphere processes plays an important role in controlling nutrient transformation, efficient nutrient acquisition and use, and thus crop productivity. The efficiency of root/rhizosphere in terms of improved nutrient mobilization, acquisition, and use can be fully exploited by: (1) manipulating root growth (i.e. root development and size, root system architecture, and distribution); (2) regulating rhizosphere processes (i.e. rhizosphere acidification, organic anion and acid phosphatase exudation, localized application of nutrients, rhizosphere interactions, and use of efficient crop genotypes); and (3) optimizing root zone management to synchronize root growth and soil nutrient supply with demand of nutrients in cropping systems. Experiments have shown that root/rhizosphere management is an effective approach to increase both nutrient use efficiency and crop productivity for sustainable crop production. The objectives of this paper are to summarize the principles of root/rhizosphere management and provide an overview of some successful case studies on how to exploit the biological potential of root system and rhizosphere processes to improve crop productivity and nutrient use efficiency.

Evaluation of instrumentation systems in reducing E. faecalis from root canals: TF adaptive and ProTaper next versus single file systems.

PubMed

Karataş, Ertuğrul; Gültekin, Esra; Arslan, Hakan; Kirici, Damla Özsu; Alsancak, Meltem; Topçu, Meltem Çolak

2015-03-01

To compare the effect of the TF Adaptive, ProTaper Next, OneShape, WaveOne, Reciproc, (SAF) on the reduction of E. faecalis in experimentally infected root canals. 70 human mandibular incisor teeth with straight roots and single root canals were selected for this experiment and the root canals of the selected teeth were infected with E. faecalis. After contamination, all the root canals were randomly divided into 7 groups: control, ProTaper Next, TF Adaptive, SAF, WaveOne, Reciproc, and OneShape. After the irrigation procedures, samples were taken from root canals with paper points and incubated in blood agar plates. The colonies grown on the blood agar were counted and interpreted as colony forming units per milliliter. Analysis of results showed that all instrumentation systems were more effective in reducing the number of bacteria than the control (P<.001). The ProTaper Next, TF Adaptive, WaveOne, Reciproc, and OneShape systems were significantly more effective than the SAF system in reducing E. faecalis within the root canals (P<.001). All instrumentation systems used in this study provided a significant reduction in bacterial populations.

Endodontic implications of the variability of the root canal systems of posterior teeth.

PubMed

Biggs, J T; Benenati, F W

1995-01-01

Variations in the morphology of roots and root canal systems create challenges which the dental practitioner must be able to recognize. Endodontic therapy is predictable and successful only to the extent that the root canal system can be debrided, disinfected and sealed against future contamination. In order to accomplish these goals it is necessary to become familiar with the variability of the system we seek to treat.

Nitrate foraging by Arabidopsis roots is mediated by the transcription factor TCP20 through the systemic signaling pathway

PubMed Central

Guan, Peizhu; Wang, Rongchen; Nacry, Philippe; Breton, Ghislain; Kay, Steve A.; Pruneda-Paz, Jose L.; Davani, Ariea; Crawford, Nigel M.

2014-01-01

To compete for nutrients in diverse soil microenvironments, plants proliferate lateral roots preferentially in nutrient-rich zones. For nitrate, root foraging involves local and systemic signaling; however, little is known about the genes that function in the systemic signaling pathway. By using nitrate enhancer DNA to screen a library of Arabidopsis transcription factors in the yeast one-hybrid system, the transcription factor gene TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR1-20 (TCP20) was identified. TCP20, which belongs to an ancient, plant-specific gene family that regulates shoot, flower, and embryo development, was implicated in nitrate signaling by its ability to bind DNA in more than 100 nitrate-regulated genes. Analysis of insertion mutants of TCP20 showed that they had normal primary and lateral root growth on homogenous nitrate media but were impaired in preferential lateral root growth (root foraging) on heterogeneous media in split-root plates. Inhibition of preferential lateral root growth was still evident in the mutants even when ammonium was uniformly present in the media, indicating that the TCP20 response was to nitrate. Comparison of tcp20 mutants with those of nlp7 mutants, which are defective in local control of root growth but not in the root-foraging response, indicated that TCP20 function is independent of and distinct from NLP7 function. Further analysis showed that tcp20 mutants lack systemic control of root growth regardless of the local nitrate concentrations. These results indicate that TCP20 plays a key role in the systemic signaling pathway that directs nitrate foraging by Arabidopsis roots. PMID:25288754

Extension of the root-locus method to a certain class of fractional-order systems.

PubMed

Merrikh-Bayat, Farshad; Afshar, Mahdi; Karimi-Ghartemani, Masoud

2009-01-01

In this paper, the well-known root-locus method is developed for the special subset of linear time-invariant systems commonly known as fractional-order systems. Transfer functions of these systems are rational functions with polynomials of rational powers of the Laplace variable s. Such systems are defined on a Riemann surface because of their multi-valued nature. A set of rules for plotting the root loci on the first Riemann sheet is presented. The important features of the classical root-locus method such as asymptotes, roots condition on the real axis and breakaway points are extended to the fractional case. It is also shown that the proposed method can assess the closed-loop stability of fractional-order systems in the presence of a varying gain in the loop. Moreover, the effect of perturbation on the root loci is discussed. Three illustrative examples are presented to confirm the effectiveness of the proposed algorithm.

Integration of root phenes revealed by intensive phenotyping of root system architecture, anatomy, and physiology in cereals

NASA Astrophysics Data System (ADS)

York, Larry

2015-04-01

Food insecurity is among the greatest challenges humanity will face in the 21st century. Agricultural production in much of the world is constrained by the natural infertility of soil which restrains crops from reaching their yield potential. In developed nations, fertilizer inputs pollute air and water and contribute to climate change and environmental degradation. In poor nations low soil fertility is a primary constraint to food security and economic development. Water is almost always limiting crop growth in any system. Increasing the acquisition efficiency of soil resources is one method by which crop yields could be increased without the use of more fertilizers or irrigation. Cereals are the most widely grown crops, both in terms of land area and in yield, so optimizing uptake efficiency of cereals is an important goal. Roots are the primary interface between plant and soil and are responsible for the uptake of soil resources. The deployment of roots in space and time comprises root system architecture (RSA). Cereal RSA is a complex phenotype that aggregates many elemental phenes (elemental units of phenotype). Integration of root phenes will be determined by interactions through their effects on soil foraging and plant metabolism. Many architectural, metabolic, and physiological root phenes have been identified in maize, including: nodal root number, nodal root growth angle, lateral root density, lateral root length, aerenchyma, cortical cell size and number, and nitrate uptake kinetics. The utility of these phenes needs confirmation in maize and in other cereals. The maize root system is composed of an embryonic root system and nodal roots that emerge in successive whorls as the plant develops, and is similar to other cereals. Current phenotyping platforms often ignore the inner whorls and instead focus on the most visible outer whorls after excavating a maize root crown from soil. Here, an intensive phenotyping platform evaluating phenes of all nodal root whorls in maize is introduced, and field work demonstrated how the variation within the root crown has functional significance for nitrogen acquisition. Nodal root number was decomposed to more elemental phenes including the number of nodes and the occupancies of each node. Simulations demonstrated that root systems forming fewer nodal roots and with delayed emergence perform well in low nitrogen soils. Nitrate uptake kinetics (NUK) also varied within the maize root system, and simulations showing a lack of interaction between NUK and RSA reflects a knowledge gap in the costs of NUK at the molecular level. Finally, maize RSA among hybrids from different era periods over the past 100 years suggests evolution towards more nitrogen efficient root phene states. This work will be discussed within the context of next-generation root phenotyping of cereals, the dilemma between extensive and intensive phenotyping, and the need for linking across scales and methods.

Effects of a constructed wetland and pond system upon shallow groundwater quality

Treesearch

Ying Ouyang

2013-01-01

Constructed wetland (CW) and constructed pond (CP) are commonly utilized for removal of excess nutrients and certain pollutants from stormwater. This study characterized shallow groundwater quality for pre- and post-CW and CP system conditions using data from monitoring wells. Results showed that the average concentrations of groundwater phosphorus (P) decreased from...

Air lateral root pruning affects longleaf pine seedling root system morphology

Treesearch

Shi-Jean Susana Sung; Dave Haywood

2016-01-01

Longleaf pine (Pinus palustris) seedlings were cultured with air lateral root pruning (side-vented containers, VT) or without (solid-walled containers, SW). Seedling root system morphology and growth were assessed before planting and 8 and 14 months after planting. Although VT seedlings had greater root collar diameter than the SW before planting,...

Root growth and physiology of potted and field-grown trembling aspen exposed to tropospheric ozone

Treesearch

M.D. Coleman; R.E. Dickson; J.G. Isebrands; D.F. Karnosky

1996-01-01

We studied root growth and respiration of potted plants and field-grown aspen trees (Populus tremuloides Michx.) exposed to ambient or twice-ambient ozone. Root dry weight of potted plants decreased up to 45% after 12 weeks of ozone treatment, and root system respiration decreased by 27%. The ozone-induced decrease in root system respiration of...

Proliferation and ajmalicine biosynthesis of Catharanthus roseus (L). G. Don adventitious roots in self-built temporary immersion system

NASA Astrophysics Data System (ADS)

Phuc, Vo Thanh; Trung, Nguyen Minh; Thien, Huynh Tri; Tien, Le Thi Thuy

2017-09-01

Periwinkle (Catharanthus roseus (L.) G. Don) is a medicinal plant containing about 130 types of alkaloids that have important pharmacological effects. Ajmalicine in periwinkle root is an antihypertensive drug used in treatment of high blood pressure. Adventitious roots obtained from periwinkle leaves of in vitro shoots grew well in quarter-strength MS medium supplemented with 0.3 mg/l IBA and 20 g/l sucrose. Dark condition was more suitable for root growth than light. However, callus formation also took place in addition to the growth of adventitious roots. Temporary immersion system was applied in the culture of adventitious roots in order to reduce the callus growth rate formed in shake flask cultures. The highest growth index of roots was achieved using the system with 5-min immersion every 45 min (1.676 ± 0.041). The roots cultured in this system grew well without callus formation. Ajmalicine content was highest in the roots cultured with 5-min immersion every 180 min (950 μg/g dry weight).

Competitive relations between Douglas-fir and Pacific madrone on shallow soils in a Mediterranean climate

USGS Publications Warehouse

Wang, Zheng Q.; Newton, M.; Tappeiner, J. C.

1995-01-01

A large area of Pacific Coast forests is characterized by shallow soil, with negligible rainfall in the growing season. This study explores water-seeking strategy on such a site. We studied availability of bedrock water and its effects on growth and ecophysiology of 11-yr-old planted Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco) and sprouting Pacific madrone (Arbutus menziesii Pursh). The study was carried out at three regulated densities of madrone sprouts on shallow ( 0.05) among three densities of madrone. However, cover in plots with the highest density of madrone (1322 sprout clumps/ha) depleted 50 mm of water from the 1.5 m layer by June, whereas vegetation on lower density treatments withdrew 15-28 mm by June, with later withdrawal distributed more uniformly through the growing season. Madrone density significantly affected basal diameter (P a?? 0.0001) and height growth (P a?? 0.002) of Douglas-fir. Madrone was consistently taller than Douglas-fir in all plots. The height of 11-yr-old madrone sprout clumps (424-465 cm) did not differ significantly among densities. Madrone leaf area index and biomass were higher at the high density of madrone than at medium density (P a?? 0.045, LAI; P a?? 0.001, biomass). Physiological advantages and rooting habits of madrone give it a competitive advantage over Douglas-fir in this area that it might not have if bedrock did not provide the principal water reservoir for summer growth.

Multiscale geophysical imaging of the critical zone

USGS Publications Warehouse

Parsekian, Andy; Singha, Kamini; Minsley, Burke J.; Holbrook, W. Steven; Slater, Lee

2015-01-01

Details of Earth's shallow subsurface—a key component of the critical zone (CZ)—are largely obscured because making direct observations with sufficient density to capture natural characteristic spatial variability in physical properties is difficult. Yet this inaccessible region of the CZ is fundamental to processes that support ecosystems, society, and the environment. Geophysical methods provide a means for remotely examining CZ form and function over length scales that span centimeters to kilometers. Here we present a review highlighting the application of geophysical methods to CZ science research questions. In particular, we consider the application of geophysical methods to map the geometry of structural features such as regolith thickness, lithological boundaries, permafrost extent, snow thickness, or shallow root zones. Combined with knowledge of structure, we discuss how geophysical observations are used to understand CZ processes. Fluxes between snow, surface water, and groundwater affect weathering, groundwater resources, and chemical and nutrient exports to rivers. The exchange of gas between soil and the atmosphere have been studied using geophysical methods in wetland areas. Indirect geophysical methods are a natural and necessary complement to direct observations obtained by drilling or field mapping. Direct measurements should be used to calibrate geophysical estimates, which can then be used to extrapolate interpretations over larger areas or to monitor changing processes over time. Advances in geophysical instrumentation and computational approaches for integrating different types of data have great potential to fill gaps in our understanding of the shallow subsurface portion of the CZ and should be integrated where possible in future CZ research.

Influence of defect dimensions on periodontal wound healing/regeneration in intrabony defects following implantation of a bovine bone biomaterial and provisions for guided tissue regeneration: an experimental study in the dog.

PubMed

Stavropoulos, Andreas; Wikesjö, Ulf M E

2010-06-01

To evaluate the influence of defect dimensions on periodontal wound healing/regeneration in intrabony defects following implantation of a deproteinized bovine bone/collagen matrix under provisions for guided tissue regeneration. Contra-lateral one-wall intrabony [6 x 6 mm (wide/deep) versus 4 x 4 mm (narrow/shallow)] periodontal defects were surgically created at the edentulated mesial aspect of the mandibular first molars in three Labradors, i.e., three defects in each category. The defects were implanted with the bovine bone/collagen matrix and covered with a collagen membrane. Histologic/histometric analysis followed an 18-month healing interval. New cementum encompassed the entire intrabony component in both wide/deep (5.6 +/- 0.5 mm) and narrow/shallow (4.2 +/- 0.1 mm) defects; bone formation amounted to 5.6 +/- 0.6 and 4.0 +/- 0.8 mm, respectively. Mineralized bone encompassed 57.5%versus 65% and the bone biomaterial 11.6%versus 13.1% of the defect space. A periodontal ligament with a width and composition similar to that of the resident periodontal ligament encompassing the entire aspect of the defects was observed. Root resorption/ankylosis was rare. Both wide/deep and narrow/shallow intrabony defects showed a substantial potential for periodontal regeneration in this pre-clinical model. The contribution of the bovine bone/collagen matrix and guided tissue regeneration to this regenerative potential is not clear.

Modelling the root system architecture of Poaceae. Can we simulate integrated traits from morphological parameters of growth and branching?

PubMed

Pagès, Loïc; Picon-Cochard, Catherine

2014-10-01

Our objective was to calibrate a model of the root system architecture on several Poaceae species and to assess its value to simulate several 'integrated' traits measured at the root system level: specific root length (SRL), maximum root depth and root mass. We used the model ArchiSimple, made up of sub-models that represent and combine the basic developmental processes, and an experiment on 13 perennial grassland Poaceae species grown in 1.5-m-deep containers and sampled at two different dates after planting (80 and 120 d). Model parameters were estimated almost independently using small samples of the root systems taken at both dates. The relationships obtained for calibration validated the sub-models, and showed species effects on the parameter values. The simulations of integrated traits were relatively correct for SRL and were good for root depth and root mass at the two dates. We obtained some systematic discrepancies that were related to the slight decline of root growth in the last period of the experiment. Because the model allowed correct predictions on a large set of Poaceae species without global fitting, we consider that it is a suitable tool for linking root traits at different organisation levels. © 2014 INRA. New Phytologist © 2014 New Phytologist Trust.

A complete system for 3D reconstruction of roots for phenotypic analysis.

PubMed

Kumar, Pankaj; Cai, Jinhai; Miklavcic, Stanley J

2015-01-01

Here we present a complete system for 3D reconstruction of roots grown in a transparent gel medium or washed and suspended in water. The system is capable of being fully automated as it is self calibrating. The system starts with detection of root tips in root images from an image sequence generated by a turntable motion. Root tips are detected using the statistics of Zernike moments on image patches centred on high curvature points on root boundary and Bayes classification rule. The detected root tips are tracked in the image sequence using a multi-target tracking algorithm. Conics are fitted to the root tip trajectories using a novel ellipse fitting algorithm which weighs the data points by its eccentricity. The conics projected from the circular trajectory have a complex conjugate intersection which are image of the circular points. Circular points constraint the image of the absolute conics which are directly related to the internal parameters of the camera. The pose of the camera is computed from the image of the rotation axis and the horizon. The silhouettes of the roots and camera parameters are used to reconstruction the 3D voxel model of the roots. We show the results of real 3D reconstruction of roots which are detailed and realistic for phenotypic analysis.

7 CFR 201.56-11 - Knotweed family, Polygonaceae.

Code of Federal Regulations, 2010 CFR

2010-01-01

...) Germination habit: Epigeal dicot. (2) Food reserves: Cotyledons, starchy endosperm. (3) Shoot system: The... development within the test period. (4) Root system: A primary root, with secondary roots developing within... conducting tissue. (ii) Malformed, such as markedly shortened, curled, or thickened. (iii) Watery. (4) Root...

7 CFR 201.56-11 - Knotweed family, Polygonaceae.

Code of Federal Regulations, 2011 CFR

2011-01-01

...) Germination habit: Epigeal dicot. (2) Food reserves: Cotyledons, starchy endosperm. (3) Shoot system: The... development within the test period. (4) Root system: A primary root, with secondary roots developing within... conducting tissue. (ii) Malformed, such as markedly shortened, curled, or thickened. (iii) Watery. (4) Root...